WorldWideScience

Sample records for alfalfa western metadata

  1. Alfalfa

    Science.gov (United States)

    Alfalfa is an herb. People use the leaves, sprouts, and seeds to make medicine. Alfalfa is used for kidney conditions, bladder and prostate ... bleeding disorder called thrombocytopenic purpura. People also take alfalfa as a source of vitamins A, C, E, ...

  2. Metadata

    CERN Document Server

    Zeng, Marcia Lei

    2016-01-01

    Metadata remains the solution for describing the explosively growing, complex world of digital information, and continues to be of paramount importance for information professionals. Providing a solid grounding in the variety and interrelationships among different metadata types, Zeng and Qin's thorough revision of their benchmark text offers a comprehensive look at the metadata schemas that exist in the world of library and information science and beyond, as well as the contexts in which they operate. Cementing its value as both an LIS text and a handy reference for professionals already in the field, this book: * Lays out the fundamentals of metadata, including principles of metadata, structures of metadata vocabularies, and metadata descriptions * Surveys metadata standards and their applications in distinct domains and for various communities of metadata practice * Examines metadata building blocks, from modelling to defining properties, and from designing application profiles to implementing value vocabu...

  3. Metadata

    CERN Document Server

    Pomerantz, Jeffrey

    2015-01-01

    When "metadata" became breaking news, appearing in stories about surveillance by the National Security Agency, many members of the public encountered this once-obscure term from information science for the first time. Should people be reassured that the NSA was "only" collecting metadata about phone calls -- information about the caller, the recipient, the time, the duration, the location -- and not recordings of the conversations themselves? Or does phone call metadata reveal more than it seems? In this book, Jeffrey Pomerantz offers an accessible and concise introduction to metadata. In the era of ubiquitous computing, metadata has become infrastructural, like the electrical grid or the highway system. We interact with it or generate it every day. It is not, Pomerantz tell us, just "data about data." It is a means by which the complexity of an object is represented in a simpler form. For example, the title, the author, and the cover art are metadata about a book. When metadata does its job well, it fades i...

  4. Genetically engineered alfalfa and feral alfalfa plants: What should growers know?

    Science.gov (United States)

    Alfalfa (Medicago sativa subsp. sativa L) is the world’s most important forage crop. The western United States is the most important production area for both alfalfa forage and alfalfa seed. Alfalfa was the first major perennial genetically-engineered (GE)crop and a GE trait for resistance to glypho...

  5. Metadata Guidelines

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document provides guidelines on metadata and metadata requirements for ServCat documents. Information on metadata is followed by an instructional flowchart and...

  6. Pollen and seed mediated gene flow in commercial alfalfa seed production fields

    Science.gov (United States)

    The potential for gene flow has been widely recognized since alfalfa is pollinated by bees. The Western US is a major exporter of alfalfa seed and hay and the organic dairy industry is one of the fastest growing agricultural sectors. Because of this, many alfalfa producers are impacted by market sen...

  7. Alfalfa: bioenergy and more

    Science.gov (United States)

    Alfalfa (Medicago sativa) has the potential to be a significant contributor to America's renewable energy future. In an alfalfa biomass energy production system, alfalfa forage would be separated into stem and leave fractions. The stems would be processed to produce energy, and the leaves would be s...

  8. Moving towards shareable metadata

    OpenAIRE

    Shreeves, Sarah L.; Riley, Jenn; Milewicz, Liz

    2006-01-01

    A focus of digital libraries, particularly since the advent of the Open Archives Initiative Protocol for Metadata Harvesting, is aggregating from multiple collections metadata describing digital content. However, the quality and interoperability of the metadata often prevents such aggregations from offering much more than very simple search and discovery services. Shareable metadata is metadata which can be understood and used outside of its local environment by aggregators to provide more ad...

  9. Active Marine Station Metadata

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Active Marine Station Metadata is a daily metadata report for active marine bouy and C-MAN (Coastal Marine Automated Network) platforms from the National Data...

  10. Alfalfa non-feed uses

    Science.gov (United States)

    Non-feed uses for alfalfa such as biomass energy and phytoremediation could increase alfalfa acreage and improve farm profitability. The new bio-energy alfalfa and production system increased forage yield and ethanol production. New alfalfas with enhanced nitrogen cycling capacities would protect wa...

  11. Alfalfa (Medicago sativa L.).

    Science.gov (United States)

    Fu, Chunxiang; Hernandez, Timothy; Zhou, Chuanen; Wang, Zeng-Yu

    2015-01-01

    Alfalfa (Medicago sativa L.) is a high-quality forage crop widely grown throughout the world. This chapter describes an efficient protocol that allows for the generation of large number of transgenic alfalfa plants by sonication-assisted Agrobacterium-mediated transformation. Binary vectors carrying different selectable marker genes that confer resistance to phosphinothricin (bar), kanamycin (npt II), or hygromycin (hph) were used to generate transgenic alfalfa plants. Intact trifoliates collected from clonally propagated plants in the greenhouse were sterilized with bleach and then inoculated with Agrobacterium strain EHA105. More than 80 % of infected leaf pieces could produce rooted transgenic plants in 4-5 months after Agrobacterium-mediated transformation.

  12. Economic Comparison of Selected Processing Alternatives for Alfalfa

    OpenAIRE

    Bates, Dan J.

    1992-01-01

    Processing alfalfa for export is of significant interest to areas like Millard County, the largest hay-producing county in Utah. In the past year there have ix been significant reductions in the price of hay as a result of increased supplies in the central and western United States. This thesis analyzes the benefits and costs of processing alfalfa into cubes and recompressed bales in order to enter the export market. Costs of production were estimated through the use of enterprise budgets ...

  13. Learning resource metadata

    Directory of Open Access Journals (Sweden)

    Silvana Temesio

    2015-10-01

    Full Text Available Metadata of educational resources are subject of analysis including LOM, OBAA and in a particular way LOM-ES Profile and accesibility VII annex. Conclusions are the importance of getting quality descriptions of resources to fulfill discovery, localization and reuse operations. The information professionals have a principal importance in the metadata registration.

  14. Visualization of JPEG Metadata

    Science.gov (United States)

    Malik Mohamad, Kamaruddin; Deris, Mustafa Mat

    There are a lot of information embedded in JPEG image than just graphics. Visualization of its metadata would benefit digital forensic investigator to view embedded data including corrupted image where no graphics can be displayed in order to assist in evidence collection for cases such as child pornography or steganography. There are already available tools such as metadata readers, editors and extraction tools but mostly focusing on visualizing attribute information of JPEG Exif. However, none have been done to visualize metadata by consolidating markers summary, header structure, Huffman table and quantization table in a single program. In this paper, metadata visualization is done by developing a program that able to summarize all existing markers, header structure, Huffman table and quantization table in JPEG. The result shows that visualization of metadata helps viewing the hidden information within JPEG more easily.

  15. Metadata in CHAOS

    DEFF Research Database (Denmark)

    Lykke, Marianne; Skov, Mette; Lund, Haakon

    is to provide access to broadcasts and provide tools to segment and manage concrete segments of radio broadcasts. Although the assigned metadata are project-specific, they serve as invaluable access points for fellow researchers due to their factual and neutral nature. The researchers particularly stress LARM.fm...... researchers apply the metadata scheme in their research work. The study consists of two studies, a) a qualitative study of subjects and vo-cabulary of the applied metadata and annotations, and 5 semi-structured interviews about goals for tagging. The findings clearly show that the primary role of LARM.fm...

  16. GSN Photo Metadata

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — GSN Photo Metadata contains photographs of Global Climate Observing System (GCOS) Surface Network (GSN) stations that have been submitted to the National Climatic...

  17. NAIP National Metadata

    Data.gov (United States)

    Farm Service Agency, Department of Agriculture — The NAIP National Metadata Map contains USGS Quarter Quad and NAIP Seamline boundaries for every year NAIP imagery has been collected. Clicking on the map also makes...

  18. Data, Metadata - Who Cares?

    Science.gov (United States)

    Baumann, Peter

    2013-04-01

    There is a traditional saying that metadata are understandable, semantic-rich, and searchable. Data, on the other hand, are big, with no accessible semantics, and just downloadable. Not only has this led to an imbalance of search support form a user perspective, but also underneath to a deep technology divide often using relational databases for metadata and bespoke archive solutions for data. Our vision is that this barrier will be overcome, and data and metadata become searchable likewise, leveraging the potential of semantic technologies in combination with scalability technologies. Ultimately, in this vision ad-hoc processing and filtering will not distinguish any longer, forming a uniformly accessible data universe. In the European EarthServer initiative, we work towards this vision by federating database-style raster query languages with metadata search and geo broker technology. We present our approach taken, how it can leverage OGC standards, the benefits envisaged, and first results.

  19. The RBV metadata catalog

    Science.gov (United States)

    Andre, Francois; Fleury, Laurence; Gaillardet, Jerome; Nord, Guillaume

    2015-04-01

    RBV (Réseau des Bassins Versants) is a French initiative to consolidate the national efforts made by more than 15 elementary observatories funded by various research institutions (CNRS, INRA, IRD, IRSTEA, Universities) that study river and drainage basins. The RBV Metadata Catalogue aims at giving an unified vision of the work produced by every observatory to both the members of the RBV network and any external person interested by this domain of research. Another goal is to share this information with other existing metadata portals. Metadata management is heterogeneous among observatories ranging from absence to mature harvestable catalogues. Here, we would like to explain the strategy used to design a state of the art catalogue facing this situation. Main features are as follows : - Multiple input methods: Metadata records in the catalog can either be entered with the graphical user interface, harvested from an existing catalogue or imported from information system through simplified web services. - Hierarchical levels: Metadata records may describe either an observatory, one of its experimental site or a single dataset produced by one instrument. - Multilingualism: Metadata can be easily entered in several configurable languages. - Compliance to standards : the backoffice part of the catalogue is based on a CSW metadata server (Geosource) which ensures ISO19115 compatibility and the ability of being harvested (globally or partially). On going tasks focus on the use of SKOS thesaurus and SensorML description of the sensors. - Ergonomy : The user interface is built with the GWT Framework to offer a rich client application with a fully ajaxified navigation. - Source code sharing : The work has led to the development of reusable components which can be used to quickly create new metadata forms in other GWT applications You can visit the catalogue (http://portailrbv.sedoo.fr/) or contact us by email rbv@sedoo.fr.

  20. Occurrence of alfalfa (Medicago sativa L.) populations along roadsides in southern Manitoba, Canada and their potential role in intraspecific gene flow.

    Science.gov (United States)

    Bagavathiannan, Muthukumar V; Gulden, Robert H; Van Acker, Rene C

    2011-04-01

    Alfalfa is a highly outcrossing perennial species that can be noticed in roadsides as feral populations. There remains little information available on the extent of feral alfalfa populations in western Canadian prairies and their role in gene flow. The main objectives of this study were (a) to document the occurrence of feral alfalfa populations, and (b) to estimate the levels of outcrossing facilitated by feral populations. A roadside survey confirmed widespread occurrence of feral alfalfa populations, particularly in alfalfa growing regions. The feral populations were dynamic and their frequency ranged from 0.2 to 1.7 populations km(-1). In many cases, the nearest feral alfalfa population from alfalfa production field was located within a distance sufficient for outcrossing in alfalfa. The gene flow study confirmed that genes can move back and forth between feral and cultivated alfalfa populations. In this study, the estimated outcrossing levels were 62% (seed fields to feral), 78% (feral to seed fields), 82% (hay fields to feral) and 85% (feral to feral). Overall, the results show that feral alfalfa plants are prevalent in alfalfa producing regions in western Canada and they can serve as bridges for gene flow at landscape level. Management of feral populations should be considered, if gene flow is a concern. Emphasis on preventing seed spill/escapes and intentional roadside planting of alfalfa cultivars will be particularly helpful. Further, realistic and pragmatic threshold levels should be established for markets sensitive to the presence of GE traits.

  1. Screening for Salnity Tolerance Among Falcata Alfalfa PI's

    Science.gov (United States)

    Many western US rangelands high in salinity could benefit from a salt tolerant falcata type alfalfa. Our objective was to use a previously developed greenhouse screening protocol to characterize 32 PI's from the NPGS system for their relative ability to survive increasing levels of NaC1 relative to...

  2. NUTRITIONAL ENHANCEMENT OF ALFALFA THROUGH GENETIC ENGINEERING

    Directory of Open Access Journals (Sweden)

    J. Faragó

    2008-09-01

    , paromomycin leaf bleach assay and molecular (PCR, Western blotting analyses were performed to confirm the transgenic nature of regenerants. Of the selected lines 96.3% showed the presence of 496 bp fragment of Ov gene. Accumulation of ≈43 kDa Ov protein was detected by Western blot analysis in leaf samples of 8 of 27 analysed transgenic lines. HPLC analysis was performed to analyse the amino acid composition of bulked leaf+stem samples of 32 transgenic and 3 non-transgenic control lines of alfalfa. Of these, three lines, SE/22-14-9-1, SE/22-16-1-3 and SE/22-16-2-2, were found to contain 1.9- to 2,2-fold higher concentration of Me+Cys, in comparison with 0.23 %DW of the non-transformed control.

  3. Metadata and the Web

    Directory of Open Access Journals (Sweden)

    Mehdi Safari

    2004-12-01

    Full Text Available The rapid increase in the number and variety of resources on the World Wide Web has made the problem of resource description and discovery central to discussions about the efficiency and evolution of this medium. The inappropriateness of traditional schemas of resource description for web resources has encouraged significant activities recently on defining web-compatible schemas named "metadata". While conceptually old for library and information professionals, metadata has taken more significant and paramount role than ever before and is considered as the golden key for the next evolution of the web in the form of semantic web. This article is intended to be a brief introduction to metadata and tries to present its overview in the web.

  4. Simplified Metadata Curation via the Metadata Management Tool

    Science.gov (United States)

    Shum, D.; Pilone, D.

    2015-12-01

    The Metadata Management Tool (MMT) is the newest capability developed as part of NASA Earth Observing System Data and Information System's (EOSDIS) efforts to simplify metadata creation and improve metadata quality. The MMT was developed via an agile methodology, taking into account inputs from GCMD's science coordinators and other end-users. In its initial release, the MMT uses the Unified Metadata Model for Collections (UMM-C) to allow metadata providers to easily create and update collection records in the ISO-19115 format. Through a simplified UI experience, metadata curators can create and edit collections without full knowledge of the NASA Best Practices implementation of ISO-19115 format, while still generating compliant metadata. More experienced users are also able to access raw metadata to build more complex records as needed. In future releases, the MMT will build upon recent work done in the community to assess metadata quality and compliance with a variety of standards through application of metadata rubrics. The tool will provide users with clear guidance as to how to easily change their metadata in order to improve their quality and compliance. Through these features, the MMT allows data providers to create and maintain compliant and high quality metadata in a short amount of time.

  5. The Metadata Anonymization Toolkit

    OpenAIRE

    2012-01-01

    This document summarizes the experience of Julien Voisin during the 2011 edition of the well-known \\emph{Google Summer of Code}. This project is a first step in the domain of metadata anonymization in Free Software. This article is articulated in three parts. First, a state of the art and a categorization of usual metadata, then the privacy policy is exposed/discussed in order to find the right balance between information lost and privacy enhancement. Finally, the specification of the Metadat...

  6. Establishing alfalfa in silage corn

    Science.gov (United States)

    According to recent agricultural statistics, alfalfa was planted on 0.44 million acres and harvested from 2.2 million acres and silage corn was planted and harvested from 1.0 million acres per year in Wisconsin. Because both crops are often grown in rotation, alfalfa could be interseeded at corn pla...

  7. A programmatic view of metadata, metadata services, and metadata flow in ATLAS

    CERN Document Server

    Malon, D; The ATLAS collaboration; Gallas, E; Stewart, G

    2012-01-01

    The volume and diversity of metadata in an experiment of the size and scope of ATLAS are considerable. Even the definition of metadata may seem context-dependent: data that are primary for one purpose may be metadata for another. Trigger information and data from the Large Hadron Collider itself provide cases in point, but examples abound. Metadata about logical or physics constructs, such as data-taking periods and runs and luminosity blocks and events and algorithms, often need to be mapped to deployment and production constructs, such as datasets and jobs and files and software versions, and vice versa. Metadata at one level of granularity may have implications at another. ATLAS metadata services must integrate and federate information from inhomogeneous sources and repositories, map metadata about logical or physics constructs to deployment and production constructs, provide a means to associate metadata at one level of granularity with processing or decision-making at another, offer a coherent and integr...

  8. A Programmatic View of Metadata, Metadata Services, and Metadata Flow in ATLAS

    CERN Document Server

    CERN. Geneva

    2012-01-01

    The volume and diversity of metadata in an experiment of the size and scope of ATLAS is considerable. Even the definition of metadata may seem context-dependent: data that are primary for one purpose may be metadata for another. Trigger information and data from the Large Hadron Collider itself provide cases in point, but examples abound. Metadata about logical or physics constructs, such as data-taking periods and runs and luminosity blocks and events and algorithms, often need to be mapped to deployment and production constructs, such as datasets and jobs and files and software versions, and vice versa. Metadata at one level of granularity may have implications at another. ATLAS metadata services must integrate and federate information from inhomogeneous sources and repositories, map metadata about logical or physics constructs to deployment and production constructs, provide a means to associate metadata at one level of granularity with processing or decision-making at another, offer a coherent and ...

  9. A Programmatic View of Metadata, Metadata Services, and Metadata Flow in ATLAS

    CERN Document Server

    Malon, D; The ATLAS collaboration; Gallas, E; Stewart, G

    2012-01-01

    The volume and diversity of metadata in an experiment of the size and scope of ATLAS are considerable. Even the definition of metadata may seem context-dependent: data that are primary for one purpose may be metadata for another. Trigger information and data from the Large Hadron Collider itself provide cases in point, but examples abound. Metadata about logical or physics constructs, such as data-taking periods and runs and luminosity blocks and events and algorithms, often need to be mapped to deployment and production constructs, such as datasets and jobs and files and software versions, and vice versa. Metadata at one level of granularity may have implications at another. ATLAS metadata services must integrate and federate information from inhomogeneous sources and repositories, map metadata about logical or physics constructs to deployment and production constructs, provide a means to associate metadata at one level of granularity with processing or decision-making at another, offer a coherent and integr...

  10. [Alfalfa Planting as weed control

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document is a letter to farming cooperators regarding the stipulations surrounding alfalfa plantings in lieu of small grain plantings to provide weed control,...

  11. Occurrence of Transgenic Feral Alfalfa (Medicago sativa subsp. sativa L.) in Alfalfa Seed Production Areas in the United States.

    Science.gov (United States)

    Greene, Stephanie L; Kesoju, Sandya R; Martin, Ruth C; Kramer, Matthew

    2015-01-01

    The potential environmental risks of transgene exposure are not clear for alfalfa (Medicago sativa subsp. sativa), a perennial crop that is cross-pollinated by insects. We gathered data on feral alfalfa in major alfalfa seed-production areas in the western United States to (1) evaluate evidence that feral transgenic plants spread transgenes and (2) determine environmental and agricultural production factors influencing the location of feral alfalfa, especially transgenic plants. Road verges in Fresno, California; Canyon, Idaho; and Walla Walla, Washington were surveyed in 2011 and 2012 for feral plants, and samples were tested for the CP4 EPSPS protein that conveys resistance to glyphosate. Of 4580 sites surveyed, feral plants were observed at 404 sites. Twenty-seven percent of these sites had transgenic plants. The frequency of sites having transgenic feral plants varied among our study areas. Transgenic plants were found in 32.7%, 21.4.7% and 8.3% of feral plant sites in Fresno, Canyon and Walla Walla, respectively. Spatial analysis suggested that feral populations started independently and tended to cluster in seed and hay production areas, places where seed tended to drop. Significant but low spatial auto correlation suggested that in some instances, plants colonized nearby locations. Neighboring feral plants were frequently within pollinator foraging range; however, further research is needed to confirm transgene flow. Locations of feral plant clusters were not well predicted by environmental and production variables. However, the likelihood of seed spillage during production and transport had predictive value in explaining the occurrence of transgenic feral populations. Our study confirms that genetically engineered alfalfa has dispersed into the environment, and suggests that minimizing seed spillage and eradicating feral alfalfa along road sides would be effective strategies to minimize transgene dispersal.

  12. Occurrence of Transgenic Feral Alfalfa (Medicago sativa subsp. sativa L. in Alfalfa Seed Production Areas in the United States.

    Directory of Open Access Journals (Sweden)

    Stephanie L Greene

    Full Text Available The potential environmental risks of transgene exposure are not clear for alfalfa (Medicago sativa subsp. sativa, a perennial crop that is cross-pollinated by insects. We gathered data on feral alfalfa in major alfalfa seed-production areas in the western United States to (1 evaluate evidence that feral transgenic plants spread transgenes and (2 determine environmental and agricultural production factors influencing the location of feral alfalfa, especially transgenic plants. Road verges in Fresno, California; Canyon, Idaho; and Walla Walla, Washington were surveyed in 2011 and 2012 for feral plants, and samples were tested for the CP4 EPSPS protein that conveys resistance to glyphosate. Of 4580 sites surveyed, feral plants were observed at 404 sites. Twenty-seven percent of these sites had transgenic plants. The frequency of sites having transgenic feral plants varied among our study areas. Transgenic plants were found in 32.7%, 21.4.7% and 8.3% of feral plant sites in Fresno, Canyon and Walla Walla, respectively. Spatial analysis suggested that feral populations started independently and tended to cluster in seed and hay production areas, places where seed tended to drop. Significant but low spatial auto correlation suggested that in some instances, plants colonized nearby locations. Neighboring feral plants were frequently within pollinator foraging range; however, further research is needed to confirm transgene flow. Locations of feral plant clusters were not well predicted by environmental and production variables. However, the likelihood of seed spillage during production and transport had predictive value in explaining the occurrence of transgenic feral populations. Our study confirms that genetically engineered alfalfa has dispersed into the environment, and suggests that minimizing seed spillage and eradicating feral alfalfa along road sides would be effective strategies to minimize transgene dispersal.

  13. Cytometry metadata in XML

    Science.gov (United States)

    Leif, Robert C.; Leif, Stephanie H.

    2016-04-01

    Introduction: The International Society for Advancement of Cytometry (ISAC) has created a standard for the Minimum Information about a Flow Cytometry Experiment (MIFlowCyt 1.0). CytometryML will serve as a common metadata standard for flow and image cytometry (digital microscopy). Methods: The MIFlowCyt data-types were created, as is the rest of CytometryML, in the XML Schema Definition Language (XSD1.1). The datatypes are primarily based on the Flow Cytometry and the Digital Imaging and Communication (DICOM) standards. A small section of the code was formatted with standard HTML formatting elements (p, h1, h2, etc.). Results:1) The part of MIFlowCyt that describes the Experimental Overview including the specimen and substantial parts of several other major elements has been implemented as CytometryML XML schemas (www.cytometryml.org). 2) The feasibility of using MIFlowCyt to provide the combination of an overview, table of contents, and/or an index of a scientific paper or a report has been demonstrated. Previously, a sample electronic publication, EPUB, was created that could contain both MIFlowCyt metadata as well as the binary data. Conclusions: The use of CytometryML technology together with XHTML5 and CSS permits the metadata to be directly formatted and together with the binary data to be stored in an EPUB container. This will facilitate: formatting, data- mining, presentation, data verification, and inclusion in structured research, clinical, and regulatory documents, as well as demonstrate a publication's adherence to the MIFlowCyt standard, promote interoperability and should also result in the textual and numeric data being published using web technology without any change in composition.

  14. Creating preservation metadata from XML-metadata profiles

    Science.gov (United States)

    Ulbricht, Damian; Bertelmann, Roland; Gebauer, Petra; Hasler, Tim; Klump, Jens; Kirchner, Ingo; Peters-Kottig, Wolfgang; Mettig, Nora; Rusch, Beate

    2014-05-01

    Registration of dataset DOIs at DataCite makes research data citable and comes with the obligation to keep data accessible in the future. In addition, many universities and research institutions measure data that is unique and not repeatable like the data produced by an observational network and they want to keep these data for future generations. In consequence, such data should be ingested in preservation systems, that automatically care for file format changes. Open source preservation software that is developed along the definitions of the ISO OAIS reference model is available but during ingest of data and metadata there are still problems to be solved. File format validation is difficult, because format validators are not only remarkably slow - due to variety in file formats different validators return conflicting identification profiles for identical data. These conflicts are hard to resolve. Preservation systems have a deficit in the support of custom metadata. Furthermore, data producers are sometimes not aware that quality metadata is a key issue for the re-use of data. In the project EWIG an university institute and a research institute work together with Zuse-Institute Berlin, that is acting as an infrastructure facility, to generate exemplary workflows for research data into OAIS compliant archives with emphasis on the geosciences. The Institute for Meteorology provides timeseries data from an urban monitoring network whereas GFZ Potsdam delivers file based data from research projects. To identify problems in existing preservation workflows the technical work is complemented by interviews with data practitioners. Policies for handling data and metadata are developed. Furthermore, university teaching material is created to raise the future scientists awareness of research data management. As a testbed for ingest workflows the digital preservation system Archivematica [1] is used. During the ingest process metadata is generated that is compliant to the

  15. Mercury Toolset for Spatiotemporal Metadata

    Science.gov (United States)

    Devarakonda, Ranjeet; Palanisamy, Giri; Green, James; Wilson, Bruce; Rhyne, B. Timothy; Lindsley, Chris

    2010-06-01

    Mercury (http://mercury.ornl.gov) is a set of tools for federated harvesting, searching, and retrieving metadata, particularly spatiotemporal metadata. Version 3.0 of the Mercury toolset provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, facetted type search, support for RSS (Really Simple Syndication) delivery of search results, and enhanced customization to meet the needs of the multiple projects that use Mercury. It provides a single portal to very quickly search for data and information contained in disparate data management systems, each of which may use different metadata formats. Mercury harvests metadata and key data from contributing project servers distributed around the world and builds a centralized index. The search interfaces then allow the users to perform a variety of fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury periodically (typically daily)harvests metadata sources through a collection of interfaces and re-indexes these metadata to provide extremely rapid search capabilities, even over collections with tens of millions of metadata records. A number of both graphical and application interfaces have been constructed within Mercury, to enable both human users and other computer programs to perform queries. Mercury was also designed to support multiple different projects, so that the particular fields that can be queried and used with search filters are easy to configure for each different project.

  16. Mercury Toolset for Spatiotemporal Metadata

    Science.gov (United States)

    Wilson, Bruce E.; Palanisamy, Giri; Devarakonda, Ranjeet; Rhyne, B. Timothy; Lindsley, Chris; Green, James

    2010-01-01

    Mercury (http://mercury.ornl.gov) is a set of tools for federated harvesting, searching, and retrieving metadata, particularly spatiotemporal metadata. Version 3.0 of the Mercury toolset provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, facetted type search, support for RSS (Really Simple Syndication) delivery of search results, and enhanced customization to meet the needs of the multiple projects that use Mercury. It provides a single portal to very quickly search for data and information contained in disparate data management systems, each of which may use different metadata formats. Mercury harvests metadata and key data from contributing project servers distributed around the world and builds a centralized index. The search interfaces then allow the users to perform a variety of fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury periodically (typically daily) harvests metadata sources through a collection of interfaces and re-indexes these metadata to provide extremely rapid search capabilities, even over collections with tens of millions of metadata records. A number of both graphical and application interfaces have been constructed within Mercury, to enable both human users and other computer programs to perform queries. Mercury was also designed to support multiple different projects, so that the particular fields that can be queried and used with search filters are easy to configure for each different project.

  17. AGROCHEMICALS GROWTH REGULATORS ON ALFALFA

    Directory of Open Access Journals (Sweden)

    Buldykova I. A.

    2015-04-01

    Full Text Available One of the methods of increasing the productivity of alfalfa is the use of growth regulators, and the use of polymeric compositions of growth regulators, binders with synthesized growth regulators of sim-triazine series is promising with the possibility of creating environmentally friendly technologies for growing alfalfa. Studies have shown that the application of the test on alfalfa growth regulators has a positive effect on growth, physiological and morphogenetic processes, plant resistance to adverse environmental conditions. Intensity impact on plant growth regulators depends on the type of plant growth regulators, concentration and method of application. Processing alfalfa seed growth regulators on germination increases energy 3,0-14,0 % germination on 8,0-17,0 %. Processing plant growth regulators to enhance the growth of plants in height (on the 7th day – 2,6-11,9 % , on the 14th 41,9-48,0 % , the growth of aboveground biomass , expands on the number of productive branches of the 1st ( 24,1-41,3 % and 2nd order (21,7-55,0 %. Pre-sowing seed treatment and plant growth regulators alfalfa sim- triazine series contributed to the increase in seed yield of 15,5 %. On average, the yield of green mass increased by 0,8-2,4 t /ha or 5,2-15,5 % and seed yield at 0,19-0,42 h/ha or 8,7-19, 3 %. Growth regulators of sim-triazine series increase the protein content of the vegetative mass of alfalfa at 3,2-4,6 %

  18. ATLAS Metadata Interface (AMI), a generic metadata framework

    CERN Document Server

    Fulachier, Jerome; The ATLAS collaboration

    2017-01-01

    The ATLAS Metadata Interface (AMI) is a mature application of more than 15 years of existence. Mainly used by the ATLAS experiment at CERN, it consists of a very generic tool ecosystem for metadata aggregation and cataloguing. We briefly describe the architecture, the main services and the benefits of using AMI in big collaborations, especially for high energy physics. We focus on the recent improvements, for instance: the lightweight clients (Python, JavaScript, C++), the new smart task server system and the Web 2.0 AMI framework for simplifying the development of metadata-oriented web interfaces.

  19. ATLAS Metadata Interface (AMI), a generic metadata framework

    CERN Document Server

    Fulachier, Jerome; The ATLAS collaboration

    2016-01-01

    The ATLAS Metadata Interface (AMI) is a mature application of more than 15 years of existence. Mainly used by the ATLAS experiment at CERN, it consists of a very generic tool ecosystem for metadata aggregation and cataloguing. We briefly describe the architecture, the main services and the benefits of using AMI in big collaborations, especially for high energy physics. We focus on the recent improvements, for instance: the lightweight clients (Python, Javascript, C++), the new smart task server system and the Web 2.0 AMI framework for simplifying the development of metadata-oriented web interfaces.

  20. Assessing Field Spectroscopy Metadata Quality

    Directory of Open Access Journals (Sweden)

    Barbara A. Rasaiah

    2015-04-01

    Full Text Available This paper presents the proposed criteria for measuring the quality and completeness of field spectroscopy metadata in a spectral archive. Definitions for metadata quality and completeness for field spectroscopy datasets are introduced. Unique methods for measuring quality and completeness of metadata to meet the requirements of field spectroscopy datasets are presented. Field spectroscopy metadata quality can be defined in terms of (but is not limited to logical consistency, lineage, semantic and syntactic error rates, compliance with a quality standard, quality assurance by a recognized authority, and reputational authority of the data owners/data creators. Two spectral libraries are examined as case studies of operationalized metadata policies, and the degree to which they are aligned with the needs of field spectroscopy scientists. The case studies reveal that the metadata in publicly available spectral datasets are underperforming on the quality and completeness measures. This paper is part two in a series examining the issues central to a metadata standard for field spectroscopy datasets.

  1. Developing the CUAHSI Metadata Profile

    Science.gov (United States)

    Piasecki, M.; Bermudez, L.; Islam, S.; Beran, B.

    2004-12-01

    The Hydrologic Information System (HIS), of the Consortium of Universities for the Advancement of Hydrologic Science Inc., (CUAHSI), has as one of its goals to improve access to large volume, high quality, and heterogeneous hydrologic data sets. This will be attained in part by adopting a community metadata profile to achieve consistent descriptions that will facilitate data discovery. However, common standards are quite general in nature and typically lack domain specific vocabularies, complicating the adoption of standards for specific communities. We will show and demonstrate the problems encountered in the process of adopting ISO standards to create a CUAHSI metadata profile. The final schema is expressed in a simple metadata format, Metadata Template File (MTF), to leverage metadata annotations/viewer tools already developed by the San Diego Super Computer Center. The steps performed to create an MTF starting from ISO 19115:2003 are the following: 1) creation of ontologies using the Web Ontology Language (OWL) for ISO:19115 2003 and related ISO/TC 211 documents; 2) conceptualization in OWL of related hydrologic vocabularies such as NASA's Global Change Master Directory and units from the Hydrologic Handbook; 3) definition of CUAHSI profile by importing and extending the previous ontologies; 4) explicit creation of CUAHSI core set 5) export of the core set to MTF); 6) definition of metadata blocks for arbitrary digital objects (e.g. time series vs static-spatial data) using ISO's methodology for feature cataloguing; and 7) export of metadata blocks to MTF.

  2. Metadata Dictionary Database: A Proposed Tool for Academic Library Metadata Management

    Science.gov (United States)

    Southwick, Silvia B.; Lampert, Cory

    2011-01-01

    This article proposes a metadata dictionary (MDD) be used as a tool for metadata management. The MDD is a repository of critical data necessary for managing metadata to create "shareable" digital collections. An operational definition of metadata management is provided. The authors explore activities involved in metadata management in…

  3. The metadata manual a practical workbook

    CERN Document Server

    Lubas, Rebecca; Schneider, Ingrid

    2013-01-01

    Cultural heritage professionals have high levels of training in metadata. However, the institutions in which they practice often depend on support staff, volunteers, and students in order to function. With limited time and funding for training in metadata creation for digital collections, there are often many questions about metadata without a reliable, direct source for answers. The Metadata Manual provides such a resource, answering basic metadata questions that may appear, and exploring metadata from a beginner's perspective. This title covers metadata basics, XML basics, Dublin Core, VRA C

  4. Evaluating the privacy properties of telephone metadata

    OpenAIRE

    2016-01-01

    Privacy protections against government surveillance are often scoped to communications content and exclude communications metadata. In the United States, the National Security Agency operated a particularly controversial program, collecting bulk telephone metadata nationwide. We investigate the privacy properties of telephone metadata to assess the impact of policies that distinguish between content and metadata. We find that telephone metadata is densely interconnected, can trivially be reid...

  5. FSA 2002 Digital Orthophoto Metadata

    Data.gov (United States)

    Minnesota Department of Natural Resources — Metadata for the 2002 FSA Color Orthophotos Layer. Each orthophoto is represented by a Quarter 24k Quad tile polygon. The polygon attributes contain the quarter-quad...

  6. phosphorus retention data and metadata

    Data.gov (United States)

    U.S. Environmental Protection Agency — phosphorus retention in wetlands data and metadata. This dataset is associated with the following publication: Lane , C., and B. Autrey. Phosphorus retention of...

  7. Metadata based mediator generation

    Energy Technology Data Exchange (ETDEWEB)

    Critchlow, T

    1998-03-01

    Mediators are a critical component of any data warehouse, particularly one utilizing partially materialized views; they transform data from its source format to the warehouse representation while resolving semantic and syntactic conflicts. The close relationship between mediators and databases, requires a mediator to be updated whenever an associated schema is modified. This maintenance may be a significant undertaking if a warehouse integrates several dynamic data sources. However, failure to quickly perform these updates significantly reduces the reliability of the warehouse because queries do not have access to the m current data. This may result in incorrect or misleading responses, and reduce user confidence in the warehouse. This paper describes a metadata framework, and associated software designed to automate a significant portion of the mediator generation task and thereby reduce the effort involved in adapting the schema changes. By allowing the DBA to concentrate on identifying the modifications at a high level, instead of reprogramming the mediator, turnaround time is reduced and warehouse reliability is improved.

  8. Alfalfa stem tissues: Cell wall deposition, composition, and degradability

    NARCIS (Netherlands)

    Jung, H.G.; Engels, F.M.

    2002-01-01

    Declining cell wall degradability of alfalfa (Medicago sativa L.) stems with maturation limits the nutritional value of alfalfa for ruminants. This study characterized changes in cell wall concentration, composition, and degradability by rumen microbes resulting from alfalfa stem tissue proliferatio

  9. Genetic Engineering of Alfalfa (Medicago sativa L.).

    Science.gov (United States)

    Wang, Dan; Khurshid, Muhammad; Sun, Zhan Min; Tang, Yi Xiong; Zhou, Mei Liang; Wu, Yan Min

    2016-01-01

    Alfalfa is excellent perennial legume forage for its extensive ecological adaptability, high nutrition value, palatability and biological nitrogen fixation. It plays a very important role in the agriculture, animal husbandry and ecological construction. It is cultivated in all continents. With the development of modern plant breeding and genetic engineering techniques, a large amount of work has been carried out on alfalfa. Here we summarize the recent research advances in genetic engineering of alfalfa breeding, including transformation, quality improvement, stress resistance and as a bioreactor. The review article can enables us to understand the research method, direction and achievements of genetic engineering technology of Alfalfa.

  10. On the Origin of Metadata

    Directory of Open Access Journals (Sweden)

    Sam Coppens

    2012-12-01

    Full Text Available Metadata has been around and has evolved for centuries, albeit not recognized as such. Medieval manuscripts typically had illuminations at the start of each chapter, being both a kind of signature for the author writing the script and a pictorial chapter anchor for the illiterates at the time. Nowadays, there is so much fragmented information on the Internet that users sometimes fail to distinguish the real facts from some bended truth, let alone being able to interconnect different facts. Here, the metadata can both act as noise-reductors for detailed recommendations to the end-users, as it can be the catalyst to interconnect related information. Over time, metadata thus not only has had different modes of information, but furthermore, metadata’s relation of information to meaning, i.e., “semantics”, evolved. Darwin’s evolutionary propositions, from “species have an unlimited reproductive capacity”, over “natural selection”, to “the cooperation of mutations leads to adaptation to the environment” show remarkable parallels to both metadata’s different modes of information and to its relation of information to meaning over time. In this paper, we will show that the evolution of the use of (metadata can be mapped to Darwin’s nine evolutionary propositions. As mankind and its behavior are products of an evolutionary process, the evolutionary process of metadata with its different modes of information is on the verge of a new-semantic-era.

  11. Metadata-Centric Discovery Service

    Science.gov (United States)

    Huang, T.; Chung, N. T.; Gangl, M. E.; Armstrong, E. M.

    2011-12-01

    It is data about data. It is the information describing a picture without looking at the picture. Through the years, the Earth Science community seeks better methods to describe science artifacts to improve the quality and efficiency in information exchange. One the purposes are to provide information to the users to guide them into identifies the science artifacts of their interest. The NASA Distributed Active Archive Centers (DAACs) are the building blocks of a data centric federation, designed for processing and archiving from NASA's Earth Observation missions and their distribution as well as provision of specialized services to users. The Physical Oceanography Distributed Active Archive Center (PO.DAAC), at the Jet Propulsion Laboratory, archives and distributes science artifacts pertain to the physical state of the ocean. As part of its high-performance operational Data Management and Archive System (DMAS) is a fast data discovery RESTful web service called the Oceanographic Common Search Interface (OCSI). The web service searches and delivers metadata on all data holdings within PO.DAAC. Currently OCSI supports metadata standards such as ISO-19115, OpenSearch, GCMD, and FGDC, with new metadata standards still being added. While we continue to seek the silver bullet in metadata standard, the Earth Science community is in fact consists of various standards due to the specific needs of its users and systems. This presentation focuses on the architecture behind OCSI as a reference implementation on building a metadata-centric discovery service.

  12. THE NEW ONLINE METADATA EDITOR FOR GENERATING STRUCTURED METADATA

    Energy Technology Data Exchange (ETDEWEB)

    Devarakonda, Ranjeet [ORNL; Shrestha, Biva [ORNL; Palanisamy, Giri [ORNL; Hook, Leslie A [ORNL; Killeffer, Terri S [ORNL; Boden, Thomas A [ORNL; Cook, Robert B [ORNL; Zolly, Lisa [United States Geological Service (USGS); Hutchison, Viv [United States Geological Service (USGS); Frame, Mike [United States Geological Service (USGS); Cialella, Alice [Brookhaven National Laboratory (BNL); Lazer, Kathy [Brookhaven National Laboratory (BNL)

    2014-01-01

    Nobody is better suited to describe data than the scientist who created it. This description about a data is called Metadata. In general terms, Metadata represents the who, what, when, where, why and how of the dataset [1]. eXtensible Markup Language (XML) is the preferred output format for metadata, as it makes it portable and, more importantly, suitable for system discoverability. The newly developed ORNL Metadata Editor (OME) is a Web-based tool that allows users to create and maintain XML files containing key information, or metadata, about the research. Metadata include information about the specific projects, parameters, time periods, and locations associated with the data. Such information helps put the research findings in context. In addition, the metadata produced using OME will allow other researchers to find these data via Metadata clearinghouses like Mercury [2][4]. OME is part of ORNL s Mercury software fleet [2][3]. It was jointly developed to support projects funded by the United States Geological Survey (USGS), U.S. Department of Energy (DOE), National Aeronautics and Space Administration (NASA) and National Oceanic and Atmospheric Administration (NOAA). OME s architecture provides a customizable interface to support project-specific requirements. Using this new architecture, the ORNL team developed OME instances for USGS s Core Science Analytics, Synthesis, and Libraries (CSAS&L), DOE s Next Generation Ecosystem Experiments (NGEE) and Atmospheric Radiation Measurement (ARM) Program, and the international Surface Ocean Carbon Dioxide ATlas (SOCAT). Researchers simply use the ORNL Metadata Editor to enter relevant metadata into a Web-based form. From the information on the form, the Metadata Editor can create an XML file on the server that the editor is installed or to the user s personal computer. Researchers can also use the ORNL Metadata Editor to modify existing XML metadata files. As an example, an NGEE Arctic scientist use OME to register

  13. The Use of Metadata Visualisation Assist Information Retrieval

    Science.gov (United States)

    2007-10-01

    aspect of the popularity scale (Ahlberg & Shneirderman, 1994). The different genres (including drama, mystery, comedy, western, horror , action etc...organised with metadata for each item within the library, providing information describing the author, the genre , the title, the publisher, the year it...album title, the track length and the genre of music. Again, any of these pieces of information can be used to quickly search and locate specific

  14. Using of Automatic Metadata Providing

    Directory of Open Access Journals (Sweden)

    P. Šimek

    2013-12-01

    Full Text Available The paper deals with the necessity of systemic solution for metadata providing by local archives into central repositories and its subsequent implementatiton by the Department of Information Technologies, Faculty of Economics and Management, Czech University of Life Sciences in Prague, for the needs of the agrarian WWW AGRIS portal. The system supports the OAI-PMH (Open Archive Initiative – Protocol for Metadata Harvesting protocol, several metadata formats and thesauri and meets the quality requirements: functionality, high level of reliability, applicability, sustainability and transferability. The SW application for the OAI-PMH requests’ servicing is run in the setting of the WWW Apache server using an efficient PHP framework Nette and database dibi layer.

  15. U.S. EPA Metadata Editor (EME)

    Data.gov (United States)

    U.S. Environmental Protection Agency — The EPA Metadata Editor (EME) allows users to create geospatial metadata that meets EPA's requirements. The tool has been developed as a desktop application that...

  16. Metadata for semantic and social applications

    OpenAIRE

    2008-01-01

    Metadata is a key aspect of our evolving infrastructure for information management, social computing, and scientific collaboration. DC-2008 will focus on metadata challenges, solutions, and innovation in initiatives and activities underlying semantic and social applications. Metadata is part of the fabric of social computing, which includes the use of wikis, blogs, and tagging for collaboration and participation. Metadata also underlies the development of semantic applications, and the Semant...

  17. The Common Metadata Repository: A High Performance, High Quality Metadata Engine for Next Generation EOSDIS Applications

    Science.gov (United States)

    Pilone, D.; Baynes, K.; Farley, J. D.; Murphy, K. J.; Ritz, S.; Northcutt, R.; Cherry, T. A.; Gokey, C.; Wanchoo, L.

    2013-12-01

    As data archives grow and more data becomes accessible online, cataloging, searching, and extracting relevant data from these archives becomes a critical part of Earth Science research. Current metadata systems such as ECHO, EMS, and GCMD require metadata providers to maintain multiple, disparate systems utilizing different formats and different mechanisms for submitting and updating their entries. As an end user or application developer, this inconsistency reduces the value of the metadata and complicates finding and using earth science data. Building on the results of the ESDIS Metadata Harmony Study of 2012, we completed a Metadata Harmony Study 2 in 2013 to identify specific areas where metadata quality, consistency, and availability could be improved while reducing the burden on metadata providers. In this talk we discuss the results of the Metadata Harmony 2 study and the impacts on the EOSDIS community. Specifically, we'll discuss: - The Unified Metadata Model (UMM) that unifies the ECHO, GCMD, and EMS metadata models - The Common Metadata Repository (CMR) which will provide a high performance common repository for both EOSDIS and non-EOSDIS metadata unifying the ECHO, GCMD, and EMS metadata stores - The CMR's approach to automated metadata assessment and review combined with a dedicated a science support team to significantly improve quality and consistency across Earth Science metadata - Future expandability of the CMR beyond basic science metadata to incorporate multiple metadata concepts including visualization, data attributes, services, documentation, and tool metadata - The CMR's relationship with evolving metadata standards such as work from the MENDS group and ISO19115 NASA Best Practices This talk is targeted at metadata providers, consumers, and Earth Science Data end users to introduce components that will support next generation EOSDIS applications.

  18. The essential guide to metadata for books

    CERN Document Server

    Register, Renee

    2013-01-01

    In The Essential Guide to Metadata for Books, you will learn exactly what you need to know to effectively generate, handle and disseminate metadata for books and ebooks. This comprehensive but digestible document will explain the life-cycle of book metadata, industry standards, XML, ONIX and the essential elements of metadata. It will also show you how effective, well-organized metadata can improve your efforts to sell a book, especially when it comes to marketing, discoverability and converting at the point of sale. This information-packed document also includes a glossary of terms

  19. GEOSS Clearinghouse Quality Metadata Analysis

    Science.gov (United States)

    Masó, J.; Díaz, P.; Ninyerola, M.; Sevillano, E.; Pons, X.

    2012-04-01

    The proliferation of similar Earth observation digital data products increases the relevance of data quality information of those datasets. GEOSS is investing important efforts in promoting the acknowledgment of the data quality in Earth observation. Activities, such as the regular meeting of QA4EO and projects as GeoViQua have the aim to make the data quality available and visible in the GEOSS Common Infrastructure (GCI). The clearinghouse is one of the main components of the GCI, which catalogues all the known Earth observation resources and provide it via the GEO Portal. Actually, after several initiatives to stimulate that (such as AIP4) most of the relevant international data providers referenced their data in the GEOSS Component and Service Registry, therefore, the GEOSS clearinghouse can be considered a global catalogue of the main Earth observation products. However, there are some important catalogues still in the process of being integrated. We developed an exhaustive study of the data quality elements available on the metadata catalogue in the GEOSS clearinghouse, to elaborate a state-of-the-art report on data quality. The clearinghouse is harvested using the OGC CSW port. Metadata following the standard ISO 19115 is saved in XML-ISO 19139 files. The semi-automatic methodology, previously applied in regional SDIs studies, generates a big metadata database that can be further analyzed. The number of metadata records harvested was 97203 (October 2011). The two main metadata nodes studied are directly related with data quality information package (DQ_DataQuality) in ISO. These are the quality indicators (DQ_Element) and the lineage information (LI_Lineage). Moreover, we also considered the usage information (MD_Usage). The results reveal 19107 (19.66%) metadata records containing quality indicators; which include a total of 52187 quality indicators. The results show also a main representation of the positional accuracy, with 37.19% of the total

  20. Applied Genetics and Genomics in Alfalfa Breeding

    Directory of Open Access Journals (Sweden)

    E. Charles Brummer

    2012-03-01

    Full Text Available Alfalfa (Medicago sativa L., a perennial and outcrossing species, is a widely planted forage legume for hay, pasture and silage throughout the world. Currently, alfalfa breeding relies on recurrent phenotypic selection, but alternatives incorporating molecular marker assisted breeding could enhance genetic gain per unit time and per unit cost, and accelerate alfalfa improvement. Many major quantitative trait loci (QTL related to agronomic traits have been identified by family-based QTL mapping, but in relatively large genomic regions. Candidate genes elucidated from model species have helped to identify some potential causal loci in alfalfa mapping and breeding population for specific traits. Recently, high throughput sequencing technologies, coupled with advanced bioinformatics tools, have been used to identify large numbers of single nucleotide polymorphisms (SNP in alfalfa, which are being developed into markers. These markers will facilitate fine mapping of quantitative traits and genome wide association mapping of agronomic traits and further advanced breeding strategies for alfalfa, such as marker-assisted selection and genomic selection. Based on ideas from the literature, we suggest several ways to improve selection in alfalfa including (1 diversity selection and paternity testing, (2 introgression of QTL and (3 genomic selection.

  1. Log-less metadata management on metadata server for parallel file systems.

    Science.gov (United States)

    Liao, Jianwei; Xiao, Guoqiang; Peng, Xiaoning

    2014-01-01

    This paper presents a novel metadata management mechanism on the metadata server (MDS) for parallel and distributed file systems. In this technique, the client file system backs up the sent metadata requests, which have been handled by the metadata server, so that the MDS does not need to log metadata changes to nonvolatile storage for achieving highly available metadata service, as well as better performance improvement in metadata processing. As the client file system backs up certain sent metadata requests in its memory, the overhead for handling these backup requests is much smaller than that brought by the metadata server, while it adopts logging or journaling to yield highly available metadata service. The experimental results show that this newly proposed mechanism can significantly improve the speed of metadata processing and render a better I/O data throughput, in contrast to conventional metadata management schemes, that is, logging or journaling on MDS. Besides, a complete metadata recovery can be achieved by replaying the backup logs cached by all involved clients, when the metadata server has crashed or gone into nonoperational state exceptionally.

  2. Log-Less Metadata Management on Metadata Server for Parallel File Systems

    Directory of Open Access Journals (Sweden)

    Jianwei Liao

    2014-01-01

    Full Text Available This paper presents a novel metadata management mechanism on the metadata server (MDS for parallel and distributed file systems. In this technique, the client file system backs up the sent metadata requests, which have been handled by the metadata server, so that the MDS does not need to log metadata changes to nonvolatile storage for achieving highly available metadata service, as well as better performance improvement in metadata processing. As the client file system backs up certain sent metadata requests in its memory, the overhead for handling these backup requests is much smaller than that brought by the metadata server, while it adopts logging or journaling to yield highly available metadata service. The experimental results show that this newly proposed mechanism can significantly improve the speed of metadata processing and render a better I/O data throughput, in contrast to conventional metadata management schemes, that is, logging or journaling on MDS. Besides, a complete metadata recovery can be achieved by replaying the backup logs cached by all involved clients, when the metadata server has crashed or gone into nonoperational state exceptionally.

  3. Evolution in Metadata Quality: Common Metadata Repository's Role in NASA Curation Efforts

    Science.gov (United States)

    Gilman, Jason; Shum, Dana; Baynes, Katie

    2016-01-01

    Metadata Quality is one of the chief drivers of discovery and use of NASA EOSDIS (Earth Observing System Data and Information System) data. Issues with metadata such as lack of completeness, inconsistency, and use of legacy terms directly hinder data use. As the central metadata repository for NASA Earth Science data, the Common Metadata Repository (CMR) has a responsibility to its users to ensure the quality of CMR search results. This poster covers how we use humanizers, a technique for dealing with the symptoms of metadata issues, as well as our plans for future metadata validation enhancements. The CMR currently indexes 35K collections and 300M granules.

  4. Ontology Based Metadata Management for National Healthcare Data Dictionary

    Directory of Open Access Journals (Sweden)

    Yasemin Yüksek

    2012-02-01

    Full Text Available Ontology based metadata is based on ontologies that give formal semantics to information for content level. In this study, ontology based metadata management that intended the metadata modeling developed for National Health Data Dictionary (NHDD was proposed. NHDD is used as a reference to all health institutions in Turkey and it provides great contribution in terms of the terminology. The approach of the proposed ontology based metadata management was achieved by using modeling methodology of metadata requirements. This methodology includes determination of metadata beneficiaries, listing of metadata requirements for each beneficiary, identification of the source of metadata, categorizing of metadata and a metamodel building.

  5. XML for catalogers and metadata librarians

    CERN Document Server

    Cole, Timothy W

    2013-01-01

    How are today's librarians to manage and describe the everexpanding volumes of resources, in both digital and print formats? The use of XML in cataloging and metadata workflows can improve metadata quality, the consistency of cataloging workflows, and adherence to standards. This book is intended to enable current and future catalogers and metadata librarians to progress beyond a bare surfacelevel acquaintance with XML, thereby enabling them to integrate XML technologies more fully into their cataloging workflows. Building on the wealth of work on library descriptive practices, cataloging, and metadata, XML for Catalogers and Metadata Librarians explores the use of XML to serialize, process, share, and manage library catalog and metadata records. The authors' expert treatment of the topic is written to be accessible to those with little or no prior practical knowledge of or experience with how XML is used. Readers will gain an educated appreciation of the nuances of XML and grasp the benefit of more advanced ...

  6. Security in a Replicated Metadata Catalogue

    CERN Document Server

    Koblitz, B

    2007-01-01

    The gLite-AMGA metadata has been developed by NA4 to provide simple relational metadata access for the EGEE user community. As advanced features, which will be the focus of this presentation, AMGA provides very fine-grained security also in connection with the built-in support for replication and federation of metadata. AMGA is extensively used by the biomedical community to store medical images metadata, digital libraries, in HEP for logging and bookkeeping data and in the climate community. The biomedical community intends to deploy a distributed metadata system for medical images consisting of various sites, which range from hospitals to computing centres. Only safe sharing of the highly sensitive metadata as provided in AMGA makes such a scenario possible. Other scenarios are digital libraries, which federate copyright protected (meta-) data into a common catalogue. The biomedical and digital libraries have been deployed using a centralized structure already for some time. They now intend to decentralize ...

  7. A Distributed Infrastructure for Metadata about Metadata: The HDMM Architectural Style and PORTAL-DOORS System

    Directory of Open Access Journals (Sweden)

    Carl Taswell

    2010-06-01

    Full Text Available Both the IRIS-DNS System and the PORTAL-DOORS System share a common architectural style for pervasive metadata networks that operate as distributed metadata management systems with hierarchical authorities for entity registering and attribute publishing. Hierarchical control of metadata redistribution throughout the registry-directory networks constitutes an essential characteristic of this architectural style called Hierarchically Distributed Mobile Metadata (HDMM with its focus on moving the metadata for who what where as fast as possible from servers in response to requests from clients. The novel concept of multilevel metadata about metadata has also been defined for the PORTAL-DOORS System with the use of entity, record, infoset, representation and message metadata. Other new features implemented include the use of aliases, priorities and metaresources.

  8. Critical Metadata for Spectroscopy Field Campaigns

    Directory of Open Access Journals (Sweden)

    Barbara A. Rasaiah

    2014-04-01

    Full Text Available A field spectroscopy metadata standard is defined as those data elements that explicitly document the spectroscopy dataset and field protocols, sampling strategies, instrument properties and environmental and logistical variables. Standards for field spectroscopy metadata affect the quality, completeness, reliability, and usability of datasets created in situ. Currently there is no standardized methodology for documentation of in situ spectroscopy data or metadata. This paper presents results of an international experiment comprising a web-based survey and expert panel evaluation that investigated critical metadata in field spectroscopy. The survey participants were a diverse group of scientists experienced in gathering spectroscopy data across a wide range of disciplines. Overall, respondents were in agreement about a core metadataset for generic campaign metadata, allowing for a prioritization of critical metadata elements to be proposed including those relating to viewing geometry, location, general target and sampling properties, illumination, instrument properties, reference standards, calibration, hyperspectral signal properties, atmospheric conditions, and general project details. Consensus was greatest among individual expert groups in specific application domains. The results allow the identification of a core set of metadata fields that enforce long term data storage and serve as a foundation for a metadata standard. This paper is part one in a series about the core elements of a robust and flexible field spectroscopy metadata standard.

  9. Evaluating the privacy properties of telephone metadata.

    Science.gov (United States)

    Mayer, Jonathan; Mutchler, Patrick; Mitchell, John C

    2016-05-17

    Since 2013, a stream of disclosures has prompted reconsideration of surveillance law and policy. One of the most controversial principles, both in the United States and abroad, is that communications metadata receives substantially less protection than communications content. Several nations currently collect telephone metadata in bulk, including on their own citizens. In this paper, we attempt to shed light on the privacy properties of telephone metadata. Using a crowdsourcing methodology, we demonstrate that telephone metadata is densely interconnected, can trivially be reidentified, and can be used to draw sensitive inferences.

  10. Prohexadione-calcium responsive alfalfa varieties ensure success of corn-interseeded alfalfa production systems

    Science.gov (United States)

    Recent USDA-NASS data indicate alfalfa and corn were planted on about 0.8 and 1.9 million hectares per year, respectively, in the Northeast, Great Lakes, Upper Midwest, and Northern Mountain regions the USA. Because both crops are often grown in rotation, alfalfa could be interseeded at corn plantin...

  11. Metadata for Content-Based Image Retrieval

    Directory of Open Access Journals (Sweden)

    Adrian Sterca

    2010-12-01

    Full Text Available This paper presents an image retrieval technique that combines content based image retrieval with pre-computed metadata-based image retrieval. The resulting system will have the advantages of both approaches: the speed/efficiency of metadata-based image retrieval and the accuracy/power of content-based image retrieval.

  12. A Metadata-Rich File System

    Energy Technology Data Exchange (ETDEWEB)

    Ames, S; Gokhale, M B; Maltzahn, C

    2009-01-07

    Despite continual improvements in the performance and reliability of large scale file systems, the management of file system metadata has changed little in the past decade. The mismatch between the size and complexity of large scale data stores and their ability to organize and query their metadata has led to a de facto standard in which raw data is stored in traditional file systems, while related, application-specific metadata is stored in relational databases. This separation of data and metadata requires considerable effort to maintain consistency and can result in complex, slow, and inflexible system operation. To address these problems, we have developed the Quasar File System (QFS), a metadata-rich file system in which files, metadata, and file relationships are all first class objects. In contrast to hierarchical file systems and relational databases, QFS defines a graph data model composed of files and their relationships. QFS includes Quasar, an XPATH-extended query language for searching the file system. Results from our QFS prototype show the effectiveness of this approach. Compared to the defacto standard, the QFS prototype shows superior ingest performance and comparable query performance on user metadata-intensive operations and superior performance on normal file metadata operations.

  13. GlamMap : Visualizing library metadata

    NARCIS (Netherlands)

    Betti, Arianna; Gerrits, Dirk; Speckmann, Bettina; van den Berg, Hein

    2014-01-01

    Libraries provide access to large amounts of library metadata. Unfortunately, many libraries only offer textual interfaces for searching and browsing their holdings. Visualisations provide simpler, faster, and more efficient ways to navigate, search and study large quantities of metadata. This paper

  14. Leveraging Metadata to Create Better Web Services

    Science.gov (United States)

    Mitchell, Erik

    2012-01-01

    Libraries have been increasingly concerned with data creation, management, and publication. This increase is partly driven by shifting metadata standards in libraries and partly by the growth of data and metadata repositories being managed by libraries. In order to manage these data sets, libraries are looking for new preservation and discovery…

  15. A Dynamic Metadata Community Profile for CUAHSI

    Science.gov (United States)

    Bermudez, L.; Piasecki, M.

    2004-12-01

    Common Metadata standards typically lack of domain specific elements, have limited extensibility and do not always resolve semantic heterogeneities that could occur in the annotations. To facilitate the use and extension of metadata specifications a methodology called Dynamic Community Profiles, DCP, is presented. The methodology allows to overwrite elements definitions and to specify core elements as metadata tree paths. DCP uses the Web Ontology Language (OWL), the Resource Description Framework (RDF) and XML syntax to formalize specifications and to create controlled vocabularies in ontologies, which enhances interoperability. This methodology was employed to create a metadata profile for the Consortium of Universities for the Advancement of Hydrologic Science Inc. (CUAHSI). The profile was created by extending ISO-19115:2003 geographic metadata standard and restricting the permissible values of some elements. The values used as controlled vocabularies were inferred from hydrologic keywords found in the Global Change Master Directory (GCMD) and from measurement units found in the Hydrologic Handbook. Also, a core metadata set for CUAHSI was formally expressed as tree paths, containing the ISO core set plus additional elements. Finally a tool was developed to test the extension and to allow creation of metadata instances in RDF/XML which conforms to the profile. Also this tool is able to export the core elements to other schema formats such as Metadata Template Files (MTF).

  16. Collection Metadata Solutions for Digital Library Applications

    Science.gov (United States)

    Hill, Linda L.; Janee, Greg; Dolin, Ron; Frew, James; Larsgaard, Mary

    1999-01-01

    Within a digital library, collections may range from an ad hoc set of objects that serve a temporary purpose to established library collections intended to persist through time. The objects in these collections vary widely, from library and data center holdings to pointers to real-world objects, such as geographic places, and the various metadata schemas that describe them. The key to integrated use of such a variety of collections in a digital library is collection metadata that represents the inherent and contextual characteristics of a collection. The Alexandria Digital Library (ADL) Project has designed and implemented collection metadata for several purposes: in XML form, the collection metadata "registers" the collection with the user interface client; in HTML form, it is used for user documentation; eventually, it will be used to describe the collection to network search agents; and it is used for internal collection management, including mapping the object metadata attributes to the common search parameters of the system.

  17. Incorporating ISO Metadata Using HDF Product Designer

    Science.gov (United States)

    Jelenak, Aleksandar; Kozimor, John; Habermann, Ted

    2016-01-01

    The need to store in HDF5 files increasing amounts of metadata of various complexity is greatly overcoming the capabilities of the Earth science metadata conventions currently in use. Data producers until now did not have much choice but to come up with ad hoc solutions to this challenge. Such solutions, in turn, pose a wide range of issues for data managers, distributors, and, ultimately, data users. The HDF Group is experimenting on a novel approach of using ISO 19115 metadata objects as a catch-all container for all the metadata that cannot be fitted into the current Earth science data conventions. This presentation will showcase how the HDF Product Designer software can be utilized to help data producers include various ISO metadata objects in their products.

  18. Comparative drought response in eleven diverse alfalfa accessions

    Science.gov (United States)

    Alfalfa (Medicago sativa L.) production is often negatively affected by drought stress. This is particularly true for alfalfa that is cultivated on rangeland. Thus, the development of drought-tolerant alfalfa cultivars is of great significance. A greenhouse study was conducted to evaluate 11 alfa...

  19. Alfalfa -- a sustainable crop for biomass energy production

    Science.gov (United States)

    Alfalfa (Medicago sativa) has the potential to be a significant contributor to America's renewable energy future. In an alfalfa biomass energy production system, alfalfa forage would be separated into stem and leave fractions. The stems would be processed to produce energy, and the leaves would be s...

  20. Virulence of Fusarium species to alfalfa seedlings

    Directory of Open Access Journals (Sweden)

    Krnjaja Vesna

    2005-01-01

    Full Text Available In in vitro conditions, virulence of 91 isolates of species Fusarium genus (F. oxysporum, F. solani, F. acuminatum, F. equiseti, F. arthrosporioides, F. proliferatum, F. avenaceum, F. semitectum, F. tricinctum, F. sporotrichioides and F. graminearum towards alfalfa seedlings was investigated. Isolates of investigated species originated from diseased alfalfa plants collected on four locations in Serbia based on symptoms of wilting caused by fusarium and root rotting. Pathogenicity and virulence of investigated isolates of Fusarium spp. were determined by visual evaluation of inoculated seedlings of cultivars K28 in laboratory conditions. All isolated of investigated species had pathogenic effect on alfalfa seedlings, which expressed symptoms such as necrosis of root, moist rotting and "melting of seedlings". Colour of necrotic root tissue varied from light brown, brown, lipstick red to explicit black, depending on the Fusarium species. Strong virulence was established in 48 isolates, medium virulence in 31 and weak virulence in 12 isolates.

  1. The Undergraduate ALFALFA Team: Collaborative Research Projects

    Science.gov (United States)

    Cannon, John M.; Koopmann, Rebecca A.; Haynes, Martha P.; Undergraduate ALFALFA Team, ALFALFA Team

    2016-01-01

    The NSF-sponsored Undergraduate ALFALFA (Arecibo Legacy Fast ALFA) Team (UAT) has allowed faculty and students from a wide range of public and private colleges and especially those with small astronomy programs to learn how science is accomplished in a large collaboration while contributing to the scientific goals of a legacy radio astronomy survey. The UAT has achieved this through close collaboration with ALFALFA PIs to identify research areas accessible to undergraduates. In this talk we will summarize the main research efforts of the UAT, including multiwavelength followup observations of ALFALFA sources, the UAT Collaborative Groups Project, the Survey of HI in Extremely Low-mass Dwarfs (SHIELD), and the Arecibo Pisces-Perseus Supercluster Survey. This work has been supported by NSF grants AST-0724918/0902211, AST-075267/0903394, AST-0725380, and AST-1211005.

  2. Virulence of Fusarium species to alfalfa seedlings

    Directory of Open Access Journals (Sweden)

    Krnjaja Vesna

    2005-01-01

    Full Text Available In in vitro conditions, virulence of 91 isolates of species Fusarium genus (F. oxysporum, F. solani, F. acuminatum, F. equiseti, F. arthrosporioides, F. prolifera- tum, F. avenaceum, F. semitectum, F. tricinctum, F. sporotrichioides and F. graminearum towards alfalfa seedlings was investigated. Isolates of investigated species originated from diseased alfalfa plants collected at four locations in Serbia based on symptoms of wilting caused by Fusarium and root rotting. Pathogenicity and virulence of investigated isolates of Fusarium spp. were determined by visual evaluation of inoculated seedlings of cultivar K28 in laboratory conditions. All isolated of investigated species had pathogenic effect on alfalfa seedlings which expressed symptoms such as necrosis of root, moist rotting and "melting of seedlings". Colour of necrotic root tissue varied from light brown, brown lipstick red to explicit black, depending on the Fusarium species. Strong virulence was established in 48 isolates, medium virulence in 31 and weak virulence in 12 isolates.

  3. Internet experiments: methods, guidelines, metadata

    Science.gov (United States)

    Reips, Ulf-Dietrich

    2009-02-01

    The Internet experiment is now a well-established and widely used method. The present paper describes guidelines for the proper conduct of Internet experiments, e.g. handling of dropout, unobtrusive naming of materials, and pre-testing. Several methods are presented that further increase the quality of Internet experiments and help to avoid frequent errors. These methods include the "seriousness check", "warm-up," "high hurdle," and "multiple site entry" techniques, control of multiple submissions, and control of motivational confounding. Finally, metadata from sites like WEXTOR (http://wextor.org) and the web experiment list (http://genpsylab-wexlist.uzh.ch/) are reported that show the current state of Internet-based research in terms of the distribution of fields, topics, and research designs used.

  4. Short communication. Nitrogen content of residual alfalfa taproots under irrigation

    Directory of Open Access Journals (Sweden)

    S. Cela

    2013-04-01

    Full Text Available The decomposition of alfalfa (Medicago sativa L. residues can provide significant amounts of N to subsequent crops, but most of the data on this subject has been obtained from 1-2 year old alfalfa stands. The objective of this study was to determine the biomass of alfalfa taproots and their N content in irrigated alfalfa stands that are more than 2 years old. Twenty-two commercial irrigated alfalfa fields were evaluated in the Ebro Valley (Northeast Spain from 2006 to 2010. The taproot biomass in the arable layer (0 to 30 cm depth ranged from 1.8 to 10.1 Mg ha-1 and averaged 4.8 Mg ha-1. In contrast, the N concentration in alfalfa taproots was constant among fields and averaged 24.6 g N kg-1. The total amount of N contained in alfalfa taproots (0-30 cm depth ranged from 47 to 96 kg N ha-1 in 55% of the fields, ranged from 97 to 200 kg N ha-1 in 22% of the fields, and exceeded 200 kg N ha-1 in 23% of the fields. The N content of the irrigated alfalfa taproots studied here is in the upper range previously reported in other areas, mainly with younger alfalfa stands. Based on the current finding, a classification of the quality of irrigated alfalfa stands is proposed to improve the estimates of the residual-N effects of alfalfa on subsequent crops.

  5. CanCore: Metadata for Learning Objects

    Directory of Open Access Journals (Sweden)

    Norm Friesen

    2002-10-01

    Full Text Available The vision of reusable digital learning resources or objects, made accessible through coordinated repository architectures and metadata technologies, has gained considerable attention within distance education and training communities. However, the pivotal role of metadata in this vision raises important and longstanding issues about classification, description and meaning. The purpose of this paper is to provide an overview of this vision, focusing specifically on issues of semantics. It will describe the CanCore Learning Object Metadata Application Profile as an important first step in addressing these issues in the context of the discovery, reuse and management of learning resources or objects.

  6. Handbook of metadata, semantics and ontologies

    CERN Document Server

    Sicilia, Miguel-Angel

    2013-01-01

    Metadata research has emerged as a discipline cross-cutting many domains, focused on the provision of distributed descriptions (often called annotations) to Web resources or applications. Such associated descriptions are supposed to serve as a foundation for advanced services in many application areas, including search and location, personalization, federation of repositories and automated delivery of information. Indeed, the Semantic Web is in itself a concrete technological framework for ontology-based metadata. For example, Web-based social networking requires metadata describing people and

  7. Glyphosate-tolerant alfalfa is compositionally equivalent to conventional alfalfa (Medicago sativa L.).

    Science.gov (United States)

    McCann, Melinda C; Rogan, Glennon J; Fitzpatrick, Sharie; Trujillo, William A; Sorbet, Roy; Hartnell, Gary F; Riodan, Susan G; Nemeth, Margaret A

    2006-09-20

    Glyphosate-tolerant alfalfa (GTA) was developed to withstand over-the-top applications of glyphosate, the active ingredient in Roundup agricultural herbicides. As a part of the safety assessment, GTA (designated J101 x J163) was grown under controlled field conditions at geographically diverse locations within the United States during the 2001 and 2003 field seasons along with control and other conventional alfalfa varieties for compositional assessment. Field trials were conducted using a randomized complete block design with four replication blocks at each site. Alfalfa forage was harvested at the late bud to early bloom stage from each plot at five field sites in 2001 (establishment year) and from four field sites in 2003 (third year of stand). The concentration of proximate constituents, fibers, amino acids, coumestrol, and minerals in the forage was measured. The results showed that the forage from GTA J101 x J163 is compositionally equivalent to forage from the control and conventional alfalfa varieties.

  8. ECONOMIC ANALYSIS OF ALFALFA INTEGRATED MANAGEMENT PRACTICES

    OpenAIRE

    Ward, Clement E.; Dowdy, Alan K.; Berberet, Richard C.; Stritzke, Jimmie F.

    1990-01-01

    Integrated pest management (IMP) initially focused on insect pest control. More recently, IPM encompasses a broader concept of management, one which crosses several disciplinary boundaries. This article reports results of research dealing with four integrated management decisions for alfalfa (cultivar selection, inset control, weed control, and end-of-season harvest options.

  9. Rapid phenotyping of alfalfa root system architecture

    Science.gov (United States)

    Root system architecture (RSA) influences the capacity of an alfalfa plant for symbiotic nitrogen fixation, nutrient uptake and water use efficiency, resistance to frost heaving, winterhardiness, and some pest and pathogen resistance. However, we currently lack a basic understanding of root system d...

  10. Mining Building Metadata by Data Stream Comparison

    DEFF Research Database (Denmark)

    Holmegaard, Emil; Kjærgaard, Mikkel Baun

    2017-01-01

    to handle data streams with only slightly similar patterns. We have evaluated Metafier with points and data from one building located in Denmark. We have evaluated Metafier with 903 points, and the overall accuracy, with only 3 known examples, was 94.71%. Furthermore we found that using DTW for mining...... ways to annotate sensor and actuation points. This makes it difficult to create intuitive queries for retrieving data streams from points. Another problem is the amount of insufficient or missing metadata. We introduce Metafier, a tool for extracting metadata from comparing data streams. Metafier...... enables a semi-automatic labeling of metadata to building instrumentation. Metafier annotates points with metadata by comparing the data from a set of validated points with unvalidated points. Metafier has three different algorithms to compare points with based on their data. The three algorithms...

  11. USGS Digital Orthophoto Quad (DOQ) Metadata

    Data.gov (United States)

    Minnesota Department of Natural Resources — Metadata for the USGS DOQ Orthophoto Layer. Each orthophoto is represented by a Quarter 24k Quad tile polygon. The polygon attributes contain the quarter-quad tile...

  12. FSA 2003-2004 Digital Orthophoto Metadata

    Data.gov (United States)

    Minnesota Department of Natural Resources — Metadata for the 2003-2004 FSA Color Orthophotos Layer. Each orthophoto is represented by a Quarter 24k Quad tile polygon. The polygon attributes contain the...

  13. Predicting Privacy Attitudes Using Phone Metadata

    OpenAIRE

    2016-01-01

    With the increasing usage of smartphones, there is a corresponding increase in the phone metadata generated by individuals using these devices. Managing the privacy of personal information on these devices can be a complex task. Recent research has suggested the use of social and behavioral data for automatically recommending privacy settings. This paper is the first effort to connect users' phone use metadata with their privacy attitudes. Based on a 10-week long field study involving phone m...

  14. Implementing Metadata that Guide Digital Preservation Services

    Directory of Open Access Journals (Sweden)

    Angela Dappert

    2011-03-01

    Full Text Available Effective digital preservation depends on a set of preservation services that work together to ensure that digital objects can be preserved for the long-term. These services need digital preservation metadata, in particular, descriptions of the properties that digital objects may have and descriptions of the requirements that guide digital preservation services. This paper analyzes how these services interact and use these metadata and develops a data dictionary to support them.

  15. What Metadata Principles Apply to Scientific Data?

    Science.gov (United States)

    Mayernik, M. S.

    2014-12-01

    Information researchers and professionals based in the library and information science fields often approach their work through developing and applying defined sets of principles. For example, for over 100 years, the evolution of library cataloging practice has largely been driven by debates (which are still ongoing) about the fundamental principles of cataloging and how those principles should manifest in rules for cataloging. Similarly, the development of archival research and practices over the past century has proceeded hand-in-hand with the emergence of principles of archival arrangement and description, such as maintaining the original order of records and documenting provenance. This project examines principles related to the creation of metadata for scientific data. The presentation will outline: 1) how understandings and implementations of metadata can range broadly depending on the institutional context, and 2) how metadata principles developed by the library and information science community might apply to metadata developments for scientific data. The development and formalization of such principles would contribute to the development of metadata practices and standards in a wide range of institutions, including data repositories, libraries, and research centers. Shared metadata principles would potentially be useful in streamlining data discovery and integration, and would also benefit the growing efforts to formalize data curation education.

  16. Science friction: data, metadata, and collaboration.

    Science.gov (United States)

    Edwards, Paul N; Mayernik, Matthew S; Batcheller, Archer L; Bowker, Geoffrey C; Borgman, Christine L

    2011-10-01

    When scientists from two or more disciplines work together on related problems, they often face what we call 'science friction'. As science becomes more data-driven, collaborative, and interdisciplinary, demand increases for interoperability among data, tools, and services. Metadata--usually viewed simply as 'data about data', describing objects such as books, journal articles, or datasets--serve key roles in interoperability. Yet we find that metadata may be a source of friction between scientific collaborators, impeding data sharing. We propose an alternative view of metadata, focusing on its role in an ephemeral process of scientific communication, rather than as an enduring outcome or product. We report examples of highly useful, yet ad hoc, incomplete, loosely structured, and mutable, descriptions of data found in our ethnographic studies of several large projects in the environmental sciences. Based on this evidence, we argue that while metadata products can be powerful resources, usually they must be supplemented with metadata processes. Metadata-as-process suggests the very large role of the ad hoc, the incomplete, and the unfinished in everyday scientific work.

  17. Metadata Management in Scientific Computing

    CERN Document Server

    Seidel, Eric L

    2012-01-01

    Complex scientific codes and the datasets they generate are in need of a sophisticated categorization environment that allows the community to store, search, and enhance metadata in an open, dynamic system. Currently, data is often presented in a read-only format, distilled and curated by a select group of researchers. We envision a more open and dynamic system, where authors can publish their data in a writeable format, allowing users to annotate the datasets with their own comments and data. This would enable the scientific community to collaborate on a higher level than before, where researchers could for example annotate a published dataset with their citations. Such a system would require a complete set of permissions to ensure that any individual's data cannot be altered by others unless they specifically allow it. For this reason datasets and codes are generally presented read-only, to protect the author's data; however, this also prevents the type of social revolutions that the private sector has seen...

  18. Exposing and harvesting metadata using the OAI metadata harvesting protocol: A tutorial

    CERN Document Server

    Warner, Simeon

    2001-01-01

    In this article I outline the ideas behind the Open Archives Initiative metadata harvesting protocol (OAIMH), and attempt to clarify some common misconceptions. I then consider how the OAIMH protocol can be used to expose and harvest metadata. Perl code examples are given as practical illustration.

  19. Exposing and Harvesting Metadata Using the OAI Metadata Harvesting Protocol A Tutorial

    CERN Document Server

    Warner, Simeon

    2001-01-01

    In this article I outline the ideas behind the Open Archives Initiative metadata harvesting protocol (OAIMH), and attempt to clarify some common misconceptions. I then consider how the OAIMH protocol can be used to expose and harvest metadata. Perl code examples are given as practical illustration.

  20. Mapping metadata for SWHi : Aligning schemas with library metadata for a historical ontology

    NARCIS (Netherlands)

    Zhang, Junte; Fahmi, Ismail; Ellermann, Henk; Bouma, Gosse; Weske, M; Hacid, MS; Godart, C

    2007-01-01

    What are the possibilities of Semantic Web technologies for organizations which traditionally have lots of structured data, such as metadata, available? A library is such a particular organization. We mapped a digital library's descriptive (bibliographic) metadata for a large historical document col

  1. Ontology-based geographic information semantic metadata integration

    Science.gov (United States)

    Zhan, Qin; Li, Deren; Zhang, Xia; Xia, Yu

    2009-10-01

    Metadata is important to facilitate data sharing among Geospatial Information Communities in distributed environment. For unanimous understanding and standard production of metadata annotations, metadata specifications are documented such as Geographic Information Metadata Standard (ISO19115-2003), the Content Standard for Digital Geospatial Metadata (CSDGM), and so on. Though these specifications provide frameworks for description of geographic data, there are two problems which embarrass sufficiently data sharing. One problem is that specifications are lack of domainspecific semantics. Another problem is that specifications can not always solve semantic heterogeneities. To solve the former problem, an ontology-based geographic information metadata extension framework is proposed which can incorporate domain-specific semantics. Besides, for solving the later problem, metadata integration mechanism based on the proposed extension is studied. In this paper, integration of metadata is realized through integration of ontologies. So integration of ontologies is also discussed. By ontology-based geographic information semantic metadata integration, sharing of geographic data is realized more efficiently.

  2. Streamlining geospatial metadata in the Semantic Web

    Science.gov (United States)

    Fugazza, Cristiano; Pepe, Monica; Oggioni, Alessandro; Tagliolato, Paolo; Carrara, Paola

    2016-04-01

    In the geospatial realm, data annotation and discovery rely on a number of ad-hoc formats and protocols. These have been created to enable domain-specific use cases generalized search is not feasible for. Metadata are at the heart of the discovery process and nevertheless they are often neglected or encoded in formats that either are not aimed at efficient retrieval of resources or are plainly outdated. Particularly, the quantum leap represented by the Linked Open Data (LOD) movement did not induce so far a consistent, interlinked baseline in the geospatial domain. In a nutshell, datasets, scientific literature related to them, and ultimately the researchers behind these products are only loosely connected; the corresponding metadata intelligible only to humans, duplicated on different systems, seldom consistently. Instead, our workflow for metadata management envisages i) editing via customizable web- based forms, ii) encoding of records in any XML application profile, iii) translation into RDF (involving the semantic lift of metadata records), and finally iv) storage of the metadata as RDF and back-translation into the original XML format with added semantics-aware features. Phase iii) hinges on relating resource metadata to RDF data structures that represent keywords from code lists and controlled vocabularies, toponyms, researchers, institutes, and virtually any description one can retrieve (or directly publish) in the LOD Cloud. In the context of a distributed Spatial Data Infrastructure (SDI) built on free and open-source software, we detail phases iii) and iv) of our workflow for the semantics-aware management of geospatial metadata.

  3. Metadata aided run selection at ATLAS

    Science.gov (United States)

    Buckingham, R. M.; Gallas, E. J.; C-L Tseng, J.; Viegas, F.; Vinek, E.; ATLAS Collaboration

    2011-12-01

    Management of the large volume of data collected by any large scale scientific experiment requires the collection of coherent metadata quantities, which can be used by reconstruction or analysis programs and/or user interfaces, to pinpoint collections of data needed for specific purposes. In the ATLAS experiment at the LHC, we have collected metadata from systems storing non-event-wise data (Conditions) into a relational database. The Conditions metadata (COMA) database tables not only contain conditions known at the time of event recording, but also allow for the addition of conditions data collected as a result of later analysis of the data (such as improved measurements of beam conditions or assessments of data quality). A new web based interface called "runBrowser" makes these Conditions Metadata available as a Run based selection service. runBrowser, based on PHP and JavaScript, uses jQuery to present selection criteria and report results. It not only facilitates data selection by conditions attributes, but also gives the user information at each stage about the relationship between the conditions chosen and the remaining conditions criteria available. When a set of COMA selections are complete, runBrowser produces a human readable report as well as an XML file in a standardized ATLAS format. This XML can be saved for later use or refinement in a future runBrowser session, shared with physics/detector groups, or used as input to ELSSI (event level Metadata browser) or other ATLAS run or event processing services.

  4. Transgenic alfalfa plants co-expressing glutathione S-transferase (GST) and human CYP2E1 show enhanced resistance to mixed contaminates of heavy metals and organic pollutants

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Yuanyuan [Department of Pharmaceutics, Qingdao University of Science and Technology, 53 Zhengzhou Road, P.O. Box 70, Qingdao 266042 (China); Liu, Junhong, E-mail: liujh@qust.edu.cn [Department of Pharmaceutics, Qingdao University of Science and Technology, 53 Zhengzhou Road, P.O. Box 70, Qingdao 266042 (China)

    2011-05-15

    Transgenic alfalfa plants simultaneously expressing human CYP2E1 and glutathione S-transferase (GST) were generated from hypocotyl segments by the use of an Agrobacterium transformation system for the phytoremediation of the mixed contaminated soil with heavy metals and organic pollutants. The transgenic alfalfa plants were screened by a combination of kanamycin resistance, PCR, GST and CYP2E1 activity and Western blot analysis. The capabilities of mixed contaminants (heavy metals-organic compounds) resistance of pKHCG transgenic alfalfa plants became markedly increased compared with the transgenic alfalfa plants expressing single gene (GST or CYP2E1) and the non-transgenic control plants. The pKHCG alfalfa plants exhibited strong resistance towards the mixtures of cadmium (Cd) and trichloroethylene (TCE) that were metabolized by the introduced GST and CYP2E1 in combination. Our results show that the pKHCG transgenic alfalfa plants have good potential for phytoremediation because they have cross-tolerance towards the complex contaminants of heavy metals and organic pollutants. Therefore, these transgenic alfalfa plants co-expressing GST and human P450 CDNAs may have a great potential for phytoremediation of mixed environmental contaminants.

  5. Building a Disciplinary Metadata Standards Directory

    Directory of Open Access Journals (Sweden)

    Alexander Ball

    2014-07-01

    Full Text Available The Research Data Alliance (RDA Metadata Standards Directory Working Group (MSDWG is building a directory of descriptive, discipline-specific metadata standards. The purpose of the directory is to promote the discovery, access and use of such standards, thereby improving the state of research data interoperability and reducing duplicative standards development work.This work builds upon the UK Digital Curation Centre's Disciplinary Metadata Catalogue, a resource created with much the same aim in mind. The first stage of the MSDWG's work was to update and extend the information contained in the catalogue. In the current, second stage, a new platform is being developed in order to extend the functionality of the directory beyond that of the catalogue, and to make it easier to maintain and sustain. Future work will include making the directory more amenable to use by automated tools.

  6. Omics Metadata Management Software v. 1 (OMMS)

    Energy Technology Data Exchange (ETDEWEB)

    2013-09-09

    Our application, the Omics Metadata Management Software (OMMS), answers both needs, empowering experimentalists to generate intuitive, consistent metadata, and to perform bioinformatics analyses and information management tasks via a simple and intuitive web-based interface. Several use cases with short-read sequence datasets are provided to showcase the full functionality of the OMMS, from metadata curation tasks, to bioinformatics analyses and results management and downloading. The OMMS can be implemented as a stand alone-package for individual laboratories, or can be configured for web-based deployment supporting geographically dispersed research teams. Our software was developed with open-source bundles, is flexible, extensible and easily installed and run by operators with general system administration and scripting language literacy.

  7. Transcript analysis in two alfalfa salt tolerance selected breeding populations relative to a non-tolerant population.

    Science.gov (United States)

    Gruber, M Y; Xia, J; Yu, M; Steppuhn, H; Wall, K; Messer, D; Sharpe, A G; Acharya, S N; Wishart, D S; Johnson, D; Miller, D R; Taheri, A

    2017-02-01

    With the growing limitations on arable land, alfalfa (a widely cultivated, low-input forage) is now being selected to extend cultivation into saline lands for low-cost biofeedstock purposes. Here, minerals and transcriptome profiles were compared between two new salinity-tolerant North American alfalfa breeding populations and a more salinity-sensitive western Canadian alfalfa population grown under hydroponic saline conditions. All three populations accumulated two-fold higher sodium in roots than shoots as a function of increased electrical conductivity. At least 50% of differentially expressed genes (p population growing under high salinity, while expression remained unchanged in the saline-tolerant populations. In particular, most reduction in transcript levels in the salt-sensitive population was observed in genes specifying cell wall structural components, lipids, secondary metabolism, auxin and ethylene hormones, development, transport, signalling, heat shock, proteolysis, pathogenesis-response, abiotic stress, RNA processing, and protein metabolism. Transcript diversity for transcription factors, protein modification, and protein degradation genes was also more strongly affected in salt-tolerant CW064027 than in salt-tolerant Bridgeview and salt-sensitive Rangelander, while both saline-tolerant populations showed more substantial up-regulation in redox-related genes and B-ZIP transcripts. The report highlights the first use of bulked genotypes as replicated samples to compare the transcriptomes of obligate out-cross breeding populations in alfalfa.

  8. Metadata Schema Used in OCLC Sampled Web Pages

    OpenAIRE

    Fei Yu

    2005-01-01

    The tremendous growth of Web resources has made information organization and retrieval more and more difficult. As one approach to this problem, metadata schemas have been developed to characterize Web resources. However, many questions have been raised about the use of metadata schemas such as which metadata schemas have been used on the Web? How did they describe Web accessible information? What is the distribution of these metadata schemas among Web pages? Do certain schemas dominate the o...

  9. From CLARIN Component Metadata to Linked Open Data

    NARCIS (Netherlands)

    Durco, M.; Windhouwer, Menzo

    2014-01-01

    In the European CLARIN infrastructure a growing number of resources are described with Component Metadata. In this paper we describe a transformation to make this metadata available as linked data. After this first step it becomes possible to connect the CLARIN Component Metadata with other valuable

  10. A quick scan on possibilities for automatic metadata generation

    NARCIS (Netherlands)

    Benneker, Frank

    2006-01-01

    The Quick Scan is a report on research into useable solutions for automatic generation of metadata or parts of metadata. The aim of this study is to explore possibilities for facilitating the process of attaching metadata to learning objects. This document is aimed at developers of digital learning

  11. Multimedia Learning Systems Based on IEEE Learning Object Metadata (LOM).

    Science.gov (United States)

    Holzinger, Andreas; Kleinberger, Thomas; Muller, Paul

    One of the "hottest" topics in recent information systems and computer science is metadata. Learning Object Metadata (LOM) appears to be a very powerful mechanism for representing metadata, because of the great variety of LOM Objects. This is on of the reasons why the LOM standard is repeatedly cited in projects in the field of eLearning…

  12. Persistence and diversity of rhizobial bacteria nodulating alfalfa

    Science.gov (United States)

    Most alfalfa seed is treated with an inoculant consisting of several strains of the nitrogen fixing bacterium Sinorhizobium meliloti to enhance nodulation of seedlings. One strategy for increasing alfalfa forage yields, particularly in less fertile sites, is selection and use of highly competitive a...

  13. Broadening the U.S. alfalfa germplasm base

    Science.gov (United States)

    Over 4000 alfalfa (Medicago sativa L.) plant introductions (PIs) exist in the USDA-ARS National Plant Germplasm System (NPGS). NAAIC has discussed/proposed pre-breeding efforts to utilize this germplasm for creating pre-commercial alfalfa germplasm. Funding constraints have been one impediment to th...

  14. Complete genome sequence of the alfalfa latent virus

    Science.gov (United States)

    Alfalfa latent virus (ALV) is a member of the carlavirus group and occurs symptomlessly in alfalfa (Medicago sativa). In the US it is prevalent in Nebraska and Wisconsin. The virus is recognized as a strain of Pea streak virus (PeSV) So far, no complete genomic sequence of PSV or ALV is availab...

  15. Digital Preservation and Metadata: History, Theory, Practice.

    Science.gov (United States)

    Lazinger, Susan S.

    This book addresses critical issues of digital preservation, providing guidelines for protecting resources from dealing with obsolescence, to responsibilities, methods of preservation, cost, and metadata formats. It also shows numerous national and international institutions that provide frameworks for digital libraries and archives. The first…

  16. The Metadata Approach to Accessing Government Information.

    Science.gov (United States)

    Moen, William E.

    2001-01-01

    Provides an overview of the articles in this issue, includes a history of the development of GILS (Government Information Locator Service), and offers perspectives on the importance of metadata for resource description and resource discovery. Presents interoperability as a challenge in integrating access to government information locator services.…

  17. Distributed Version Control and Library Metadata

    Directory of Open Access Journals (Sweden)

    Galen M. Charlton

    2008-06-01

    Full Text Available Distributed version control systems (DVCSs are effective tools for managing source code and other artifacts produced by software projects with multiple contributors. This article describes DVCSs and compares them with traditional centralized version control systems, then describes extending the DVCS model to improve the exchange of library metadata.

  18. Metadata Exporter for Scientific Photography Management

    Science.gov (United States)

    Staudigel, D.; English, B.; Delaney, R.; Staudigel, H.; Koppers, A.; Hart, S.

    2005-12-01

    Photographs have become an increasingly important medium, especially with the advent of digital cameras. It has become inexpensive to take photographs and quickly post them on a website. However informative photos may be, they still need to be displayed in a convenient way, and be cataloged in such a manner that makes them easily locatable. Managing the great number of photographs that digital cameras allow and creating a format for efficient dissemination of the information related to the photos is a tedious task. Products such as Apple's iPhoto have greatly eased the task of managing photographs, However, they often have limitations. Un-customizable metadata fields and poor metadata extraction tools limit their scientific usefulness. A solution to this persistent problem is a customizable metadata exporter. On the ALIA expedition, we successfully managed the thousands of digital photos we took. We did this with iPhoto and a version of the exporter that is now available to the public under the name "CustomHTMLExport" (http://www.versiontracker.com/dyn/moreinfo/macosx/27777), currently undergoing formal beta testing This software allows the use of customized metadata fields (including description, time, date, GPS data, etc.), which is exported along with the photo. It can also produce webpages with this data straight from iPhoto, in a much more flexible way than is already allowed. With this tool it becomes very easy to manage and distribute scientific photos.

  19. Alfalfa (Medicago Sativa L As A Promising Forage In Indonesia

    Directory of Open Access Journals (Sweden)

    Sajimin

    2011-06-01

    Full Text Available Alfalfa (Medicago sativa L or Lucerne is a perennial herbaceous legume with superior forage quality. It is the most important forage crop in the world and it was the first domesticated forage crop. Alfalfa is able to fix nitrogen from the air through a symbiotic relationship with Rhizobium bacteria with N production 7.85 – 10.37 g/m2. Its rooting system can reach 4.5 m that allows it to escape drought. Forage production can reach 15.48 tons of dry matter per ha/year and containing 18.0 – 29.1 % crude protein. Plants can live 3 to 12 years depending on climatic conditions and crop varieties. However, alfalfa is not a tropical plant, thus it has not been widely cultivated in Indonesia. The problem of alfalfa cultivation are high pest attacks and competition with weeds. Therefore, alfalfa cultivation requires attention and good management to obtain optimum yield.

  20. Effects of diets containing alfalfa hay or barley flour mixed alfalfa silage on feeding behavior, productivity, rumen fermentation and blood metabolites in lactating cows.

    Science.gov (United States)

    Khadem, Ali-Akbar; Sharifi, Majid; Afzalzadeh, Ahmad; Rezaeian, Mohammad

    2009-08-01

    The effects of barley flour on the fermentation parameters of alfalfa silage and on the productivity of dairy cows were investigated. Alfalfa forage was ensiled either with or without barley flour. Barley flour was soaked in water for 24 h before being mixed with alfalfa (12 kg: 100 kg dry matter bases) at ensiling. Eighteen multi-parous cows were assigned to three equal treatment groups using a completely randomized design. Three isocaloric and isonitrogenous total mixed rations containing alfalfa hay, ordinary alfalfa silage or barley flour mixed alfalfa silage were then prepared. The concentrations of ammonia nitrogen, acetic acid and butyric acid were lower in barley flour mixed alfalfa silage compared to that in ordinary alfalfa silage but the concentration of lactic acid was lower in the ordinary alfalfa silage. Feeding behavior, milk yield and composition, ruminal fermentation and blood metabolites were measured. Although dry matter intake and milk production were not affected, the effect of preparation of alfalfa influenced feeding behavior and rumen fermentation parameters. Cows on alfalfa silage diets spent longer ruminating compared to those fed alfalfa hay. The ruminal ammonia nitrogen and blood urea were affected by ensiling (alfalfa hay versus alfalfa silages) while both parameters were lower in cows fed on barley flour mixed alfalfa silage than those fed on ordinary silage. Although similar blood glucose was recorded for cows fed on alfalfa silages, it was higher in cows fed on alfalfa hay. It is concluded that the addition of barely flour when making alfalfa silage may improve both the fermentation process during ensilage and the ruminal ammonia nitrogen utilization with no significant effects on productivity.

  1. Metadata Effectiveness in Internet Discovery: An Analysis of Digital Collection Metadata Elements and Internet Search Engine Keywords

    Science.gov (United States)

    Yang, Le

    2016-01-01

    This study analyzed digital item metadata and keywords from Internet search engines to learn what metadata elements actually facilitate discovery of digital collections through Internet keyword searching and how significantly each metadata element affects the discovery of items in a digital repository. The study found that keywords from Internet…

  2. Intended release and actual retention of alfalfa leafcutting bees (hymenoptera: megachilidae) for pollination in commercial alfalfa seed fields

    Science.gov (United States)

    Low, medium, and high stocking densities of Megachile rotundata, the alfalfa leafcutting bee, were released over four years in three research plots of Utah alfalfa planted at seed-production rates. A low number of bees (46-79% of released) survived the incubation and field emergence processes, and ...

  3. Making Interoperability Easier with NASA's Metadata Management Tool (MMT)

    Science.gov (United States)

    Shum, Dana; Reese, Mark; Pilone, Dan; Baynes, Katie

    2016-01-01

    While the ISO-19115 collection level metadata format meets many users' needs for interoperable metadata, it can be cumbersome to create it correctly. Through the MMT's simple UI experience, metadata curators can create and edit collections which are compliant with ISO-19115 without full knowledge of the NASA Best Practices implementation of ISO-19115 format. Users are guided through the metadata creation process through a forms-based editor, complete with field information, validation hints and picklists. Once a record is completed, users can download the metadata in any of the supported formats with just 2 clicks.

  4. Efficient processing of MPEG-21 metadata in the binary domain

    Science.gov (United States)

    Timmerer, Christian; Frank, Thomas; Hellwagner, Hermann; Heuer, Jörg; Hutter, Andreas

    2005-10-01

    XML-based metadata is widely adopted across the different communities and plenty of commercial and open source tools for processing and transforming are available on the market. However, all of these tools have one thing in common: they operate on plain text encoded metadata which may become a burden in constrained and streaming environments, i.e., when metadata needs to be processed together with multimedia content on the fly. In this paper we present an efficient approach for transforming such kind of metadata which are encoded using MPEG's Binary Format for Metadata (BiM) without additional en-/decoding overheads, i.e., within the binary domain. Therefore, we have developed an event-based push parser for BiM encoded metadata which transforms the metadata by a limited set of processing instructions - based on traditional XML transformation techniques - operating on bit patterns instead of cost-intensive string comparisons.

  5. Towards Data Value-Level Metadata for Clinical Studies.

    Science.gov (United States)

    Zozus, Meredith Nahm; Bonner, Joseph

    2017-01-01

    While several standards for metadata describing clinical studies exist, comprehensive metadata to support traceability of data from clinical studies has not been articulated. We examine uses of metadata in clinical studies. We examine and enumerate seven sources of data value-level metadata in clinical studies inclusive of research designs across the spectrum of the National Institutes of Health definition of clinical research. The sources of metadata inform categorization in terms of metadata describing the origin of a data value, the definition of a data value, and operations to which the data value was subjected. The latter is further categorized into information about changes to a data value, movement of a data value, retrieval of a data value, and data quality checks, constraints or assessments to which the data value was subjected. The implications of tracking and managing data value-level metadata are explored.

  6. Floristic composition and weed biomass in organic alfalfa crop

    Directory of Open Access Journals (Sweden)

    Ilić Olivera M.

    2016-01-01

    Full Text Available The paper presents the results of floristic composition and weed biomass in organic alfalfa crop in different years of alfalfa growing. The experiment was conducted in experimental plots in Futog, during the vegetation period of 2015. The presence of 60 weed species was noted, 49 of all weeds were noticed in the third, 48 in the fourth and 34 in the fifth year of organic alfalfa growing. Quantitative and qualitative structure of weed community depended on the age of alfalfa crop. By the analysis of cover values and the degree of the presence of weed species, it can be seen that species: Rumex obtusifolius L., Taraxacum officinale Web., Cynodon dactylon Pers. and Artemisia vulgaris L. had the greatest significance on weed infestation of alfalfa. The largest number of weed species belonged to the families Poaceae and Asteraceae. The biological spectrum of weeds species was defined by the terophyta dominance, whose number was reduced due to the age of the crop, while the share of hemicryptophytes and geophytes was more or less constant. Although we found a considerable level of infestation of alfalfa, alfalfa biomass reached acceptable values that were significantly higher than the weed biomass, which was statistically highly significant.

  7. Clustering of HI galaxies in HIPASS and ALFALFA

    CERN Document Server

    Passmoor, S S; Faltenbacher, A

    2011-01-01

    We investigate the clustering of HI-selected galaxies in the ALFALFA survey and compare results with those obtained for HIPASS. Measurements of the angular correlation function and the inferred 3D-clustering are compared with results from direct spatial-correlation measurements. We are able to measure clustering on smaller angular scales and for galaxies with lower HI masses than was previously possible. We calculate the expected clustering of dark matter using the redshift distributions of HIPASS and ALFALFA and show that the ALFALFA sample is somewhat more anti-biased with respect to dark matter than the HIPASS sample.

  8. VARIABILIDAD DEL ECOTIPO DE ALFALFA 'TIERRA DE CAMPOS'

    OpenAIRE

    Fombellida Villafruela, A.

    2011-01-01

    La alfalfa es el cultivo forrajero más extendido en la comarca de Tierra de Campos. Se cultiva habitualmente en secano, con aprovechamiento mediante siega para heno y mediante pastoreo de los rebrotes, destinándose parte de superficie a la producción de semilla para uso propio. Esta forma de manejo, en este ambiente, a lo largo de los años, ha originado un tipo de alfalfa conocido con el nombre de 'Tierra de Campos'. La introducción en la comarca de alfalfas flamencas para su multiplicación, ...

  9. PIMMS tools for capturing metadata about simulations

    Science.gov (United States)

    Pascoe, Charlotte; Devine, Gerard; Tourte, Gregory; Pascoe, Stephen; Lawrence, Bryan; Barjat, Hannah

    2013-04-01

    PIMMS (Portable Infrastructure for the Metafor Metadata System) provides a method for consistent and comprehensive documentation of modelling activities that enables the sharing of simulation data and model configuration information. The aim of PIMMS is to package the metadata infrastructure developed by Metafor for CMIP5 so that it can be used by climate modelling groups in UK Universities. PIMMS tools capture information about simulations from the design of experiments to the implementation of experiments via simulations that run models. PIMMS uses the Metafor methodology which consists of a Common Information Model (CIM), Controlled Vocabularies (CV) and software tools. PIMMS software tools provide for the creation and consumption of CIM content via a web services infrastructure and portal developed by the ES-DOC community. PIMMS metadata integrates with the ESGF data infrastructure via the mapping of vocabularies onto ESGF facets. There are three paradigms of PIMMS metadata collection: Model Intercomparision Projects (MIPs) where a standard set of questions is asked of all models which perform standard sets of experiments. Disciplinary level metadata collection where a standard set of questions is asked of all models but experiments are specified by users. Bespoke metadata creation where the users define questions about both models and experiments. Examples will be shown of how PIMMS has been configured to suit each of these three paradigms. In each case PIMMS allows users to provide additional metadata beyond that which is asked for in an initial deployment. The primary target for PIMMS is the UK climate modelling community where it is common practice to reuse model configurations from other researchers. This culture of collaboration exists in part because climate models are very complex with many variables that can be modified. Therefore it has become common practice to begin a series of experiments by using another climate model configuration as a starting

  10. Metadata Analysis at the Command-Line

    Directory of Open Access Journals (Sweden)

    Mark Phillips

    2013-01-01

    Full Text Available Over the past few years the University of North Texas Libraries' Digital Projects Unit (DPU has developed a set of metadata analysis tools, processes, and methodologies aimed at helping to focus limited quality control resources on the areas of the collection where they might have the most benefit. The key to this work lies in its simplicity: records harvested from OAI-PMH-enabled digital repositories are transformed into a format that makes them easily parsable using traditional Unix/Linux-based command-line tools. This article describes the overall methodology, introduces two simple open-source tools developed to help with the aforementioned harvesting and breaking, and provides example commands to demonstrate some common metadata analysis requests. All software tools described in the article are available with an open-source license via the author's GitHub account.

  11. Testing Metadata Existence of Web Map Services

    Directory of Open Access Journals (Sweden)

    Jan Růžička

    2011-05-01

    Full Text Available For a general user is quite common to use data sources available on WWW. Almost all GIS software allow to use data sources available via Web Map Service (ISO/OGC standard interface. The opportunity to use different sources and combine them brings a lot of problems that were discussed many times on conferences or journal papers. One of the problem is based on non existence of metadata for published sources. The question was: were the discussions effective? The article is partly based on comparison of situation for metadata between years 2007 and 2010. Second part of the article is focused only on 2010 year situation. The paper is created in a context of research of intelligent map systems, that can be used for an automatic or a semi-automatic map creation or a map evaluation.

  12. GraphMeta: Managing HPC Rich Metadata in Graphs

    Energy Technology Data Exchange (ETDEWEB)

    Dai, Dong; Chen, Yong; Carns, Philip; Jenkins, John; Zhang, Wei; Ross, Robert

    2016-01-01

    High-performance computing (HPC) systems face increasingly critical metadata management challenges, especially in the approaching exascale era. These challenges arise not only from exploding metadata volumes, but also from increasingly diverse metadata, which contains data provenance and arbitrary user-defined attributes in addition to traditional POSIX metadata. This ‘rich’ metadata is becoming critical to supporting advanced data management functionality such as data auditing and validation. In our prior work, we identified a graph-based model as a promising solution to uniformly manage HPC rich metadata due to its flexibility and generality. However, at the same time, graph-based HPC rich metadata anagement also introduces significant challenges to the underlying infrastructure. In this study, we first identify the challenges on the underlying infrastructure to support scalable, high-performance rich metadata management. Based on that, we introduce GraphMeta, a graphbased engine designed for this use case. It achieves performance scalability by introducing a new graph partitioning algorithm and a write-optimal storage engine. We evaluate GraphMeta under both synthetic and real HPC metadata workloads, compare it with other approaches, and demonstrate its advantages in terms of efficiency and usability for rich metadata management in HPC systems.

  13. Evaluating non-relational storage technology for HEP metadata and meta-data catalog

    Science.gov (United States)

    Grigorieva, M. A.; Golosova, M. V.; Gubin, M. Y.; Klimentov, A. A.; Osipova, V. V.; Ryabinkin, E. A.

    2016-10-01

    Large-scale scientific experiments produce vast volumes of data. These data are stored, processed and analyzed in a distributed computing environment. The life cycle of experiment is managed by specialized software like Distributed Data Management and Workload Management Systems. In order to be interpreted and mined, experimental data must be accompanied by auxiliary metadata, which are recorded at each data processing step. Metadata describes scientific data and represent scientific objects or results of scientific experiments, allowing them to be shared by various applications, to be recorded in databases or published via Web. Processing and analysis of constantly growing volume of auxiliary metadata is a challenging task, not simpler than the management and processing of experimental data itself. Furthermore, metadata sources are often loosely coupled and potentially may lead to an end-user inconsistency in combined information queries. To aggregate and synthesize a range of primary metadata sources, and enhance them with flexible schema-less addition of aggregated data, we are developing the Data Knowledge Base architecture serving as the intelligence behind GUIs and APIs.

  14. Metadata Management System for Healthcare Information Systems

    OpenAIRE

    Patil, Ketan Shripat

    2011-01-01

    The Utah Department of Health (UDOH) uses multiple and diverse healthcare information systems for managing, maintaining, and sharing the health information. To keep track of the important details about these information systems such as the operational details, data semantics, data exchange standards, and personnel responsible for maintaining and managing it is a monumental task, with several limitations. This report describes the design and implementation of the Metadata Management System (MD...

  15. HIS Central and the Hydrologic Metadata Catalog

    Science.gov (United States)

    Whitenack, T.; Zaslavsky, I.; Valentine, D. W.

    2008-12-01

    The CUAHSI Hydrologic Information System project maintains a comprehensive workflow for publishing hydrologic observations data and registering them to the common Hydrologic Metadata Catalog. Once the data are loaded into a database instance conformant with the CUAHSI HIS Observations Data Model (ODM), the user configures ODM web service template to point to the new database. After this, the hydrologic data become available via the standard CUAHSI HIS web service interface, that includes both data discovery (GetSites, GetVariables, GetSiteInfo, GetVariableInfo) and data retrieval (GetValues) methods. The observations data then can be further exposed via the global semantics-based search engine called Hydroseek. To register the published observations networks to the global search engine, users can now use the HIS Central application (new in HIS 1.1). With this online application, the WaterML-compliant web services can be submitted to the online catalog of data services, along with network metadata and a desired network symbology. Registering services to the HIS Central application triggers a harvester which uses the services to retrieve additional network metadata from the underlying ODM (information about stations, variables, and periods of record). The next step in HIS Central application is mapping variable names from the newly registered network, to the terms used in the global search ontology. Once these steps are completed, the new observations network is added to the map and becomes available for searching and querying. The number of observations network registered to the Hydrologic Metadata Catalog at SDSC is constantly growing. At the time of submission, the catalog contains 51 registered networks, with estimated 1.7 million stations.

  16. Publishers and Libraries: Sharing Metadata Between Communities

    OpenAIRE

    2014-01-01

    A project team dubbed the Author Names Project has been working on an ambitious effort that aims to have a major impact on how libraries and publishers exchange data in support of discovery of new authors and their scholarly and creative content. The project team has been developing a proof-of-concept system to enable publishers to exchange Author Names/Identity metadata with libraries. This web application, which we are calling OAQ (Online Author Questionnaire), is open source and will utili...

  17. Ontology-Based Search of Genomic Metadata.

    Science.gov (United States)

    Fernandez, Javier D; Lenzerini, Maurizio; Masseroli, Marco; Venco, Francesco; Ceri, Stefano

    2016-01-01

    The Encyclopedia of DNA Elements (ENCODE) is a huge and still expanding public repository of more than 4,000 experiments and 25,000 data files, assembled by a large international consortium since 2007; unknown biological knowledge can be extracted from these huge and largely unexplored data, leading to data-driven genomic, transcriptomic, and epigenomic discoveries. Yet, search of relevant datasets for knowledge discovery is limitedly supported: metadata describing ENCODE datasets are quite simple and incomplete, and not described by a coherent underlying ontology. Here, we show how to overcome this limitation, by adopting an ENCODE metadata searching approach which uses high-quality ontological knowledge and state-of-the-art indexing technologies. Specifically, we developed S.O.S. GeM (http://www.bioinformatics.deib.polimi.it/SOSGeM/), a system supporting effective semantic search and retrieval of ENCODE datasets. First, we constructed a Semantic Knowledge Base by starting with concepts extracted from ENCODE metadata, matched to and expanded on biomedical ontologies integrated in the well-established Unified Medical Language System. We prove that this inference method is sound and complete. Then, we leveraged the Semantic Knowledge Base to semantically search ENCODE data from arbitrary biologists' queries. This allows correctly finding more datasets than those extracted by a purely syntactic search, as supported by the other available systems. We empirically show the relevance of found datasets to the biologists' queries.

  18. Biological and Molecular Variability of Alfalfa mosaic virus Affecting Alfalfa Crop in Riyadh Region

    Directory of Open Access Journals (Sweden)

    Mohammed A. AL-Saleh

    2013-12-01

    Full Text Available In 2011–2012, sixty nine samples were collected from alfalfa plants showing viral infection symptoms in Riyadh region. Mechanical inoculation with sap prepared from two collected samples out of twenty five possitive for Alfalfa mosaic virus (AMV by ELISA were produced systemic mosaic on Vigna unguiculata and Nicotiana tabacum, local lesion on Chenopodium amaranticolor and C. quinoa. Vicia faba indicator plants that induce mosaic and mottle with AMV-Sagir isolate and no infection with AMV-Wadi aldawasser isolate. Approximately 700-bp was formed by RT-PCR using AMV coat protein specific primer. Samples from infected alfalfa gave positive results, while healthy plant gave negative result using dot blot hybridization assay. The nucleotide sequences of the Saudi isolates were compared with corresponding viral nucleotide sequences reported in GenBank. The obtained results showed that the AMV from Australia, Brazil, Puglia and China had the highest similarity with AMV-Sajer isolate. While, the AMV from Spain and New Zealaland had the lowest similarity with AMV-Sajer and Wadi aldawasser isolates. The data obtained in this study has been deposited in the GenBank under the accession numbers KC434083 and KC434084 for AMV-Sajer and AMV- Wadialdawasser respectively. This is the first report regarding the gnetic make up of AMV in Saudi Arabia.

  19. The role of metadata in managing large environmental science datasets. Proceedings

    Energy Technology Data Exchange (ETDEWEB)

    Melton, R.B.; DeVaney, D.M. [eds.] [Pacific Northwest Lab., Richland, WA (United States); French, J. C. [Univ. of Virginia, (United States)

    1995-06-01

    The purpose of this workshop was to bring together computer science researchers and environmental sciences data management practitioners to consider the role of metadata in managing large environmental sciences datasets. The objectives included: establishing a common definition of metadata; identifying categories of metadata; defining problems in managing metadata; and defining problems related to linking metadata with primary data.

  20. An emergent theory of digital library metadata enrich then filter

    CERN Document Server

    Stevens, Brett

    2015-01-01

    An Emergent Theory of Digital Library Metadata is a reaction to the current digital library landscape that is being challenged with growing online collections and changing user expectations. The theory provides the conceptual underpinnings for a new approach which moves away from expert defined standardised metadata to a user driven approach with users as metadata co-creators. Moving away from definitive, authoritative, metadata to a system that reflects the diversity of users’ terminologies, it changes the current focus on metadata simplicity and efficiency to one of metadata enriching, which is a continuous and evolving process of data linking. From predefined description to information conceptualised, contextualised and filtered at the point of delivery. By presenting this shift, this book provides a coherent structure in which future technological developments can be considered.

  1. An Approach to Metadata Generation for Learning Objects

    Science.gov (United States)

    Menendez D., Victor; Zapata G., Alfredo; Vidal C., Christian; Segura N., Alejandra; Prieto M., Manuel

    Metadata describe instructional resources and define their nature and use. Metadata are required to guarantee reusability and interchange of instructional resources into e-Learning systems. However, fulfilment of large metadata attributes is a hard and complex task for almost all LO developers. As a consequence many mistakes are made. This can cause the impoverishment of data quality in indexing, searching and recovering process. We propose a methodology to build Learning Objects from digital resources. The first phase includes automatic preprocessing of resources using techniques from information retrieval. Initial metadata obtained in this first phase are then used to search similar LO to propose missed metadata. The second phase considers assisted activities that merge computer advice with human decisions. Suggestions are based on metadata of similar Learning Object using fuzzy logic theory.

  2. A CONCEPTUAL METADATA FRAMEWORK FOR SPATIAL DATA WAREHOUSE

    Directory of Open Access Journals (Sweden)

    M.Laxmaiah

    2013-05-01

    Full Text Available Metadata represents the information about data to be stored in Data Warehouses. It is a mandatory element of Data Warehouse to build an efficient Data Warehouse. Metadata helps in data integration, lineage, data quality and populating transformed data into data warehouse. Spatial data warehouses are based on spatial data mostly collected from Geographical Information Systems (GIS and the transactional systems that are specific to an application or enterprise. Metadata design and deployment is the most critical phase in building of data warehouse where it is mandatory to bring the spatial information and data modeling together. In this paper, we present a holistic metadata framework that drives metadata creation for spatial data warehouse. Theoretically, the proposed metadata framework improves the efficiency of accessing of data in response to frequent queries on SDWs. In other words, the proposed framework decreases the response time of the query and accurate information is fetched from Data Warehouse including the spatial information

  3. Observaciones sobre el Cultivo de la Alfalfa

    Directory of Open Access Journals (Sweden)

    Mejía. Pedro Nel

    1947-09-01

    Full Text Available En 1940, la Secretaría de Agricultura de Caldas estableció en la fracción de la Enea del Municipio de Manizales un pequeño predio experimental o campo de observación para forrajes, destinado al fomento y divulgación de los mismos. Los datos que consignamos en el presente estudio se refiere a los retados experimentales del lote de alfalfa N° 3 de la granja, que está compuesto por una área de 1947 metros cuadrados. Sirve esto para que las personas interesadas hagan la reducción a la plaza (6.400 metros cuadrados y a la hectárea (10.000 metros cuadrados.

  4. EFFECT OF STORAGE TIME ON ALFALFA SEED QUALITY

    Directory of Open Access Journals (Sweden)

    Tihomir ČUPIĆ

    2005-07-01

    Full Text Available Alfalfa (Medicago sativa L. is a crop characterised by presence of hard (dormant seed that are viable but do not germinate in seed quality testing. In Republic of Croatia seed are frequently stored for three to four years due to low needs for seed of alfalfa and considerable import. The share of hard seed is decreased by storage time, temperature and air moisture changes and therefore directly keeps the level of seed germination in a longer period of storage.

  5. Multiwalled carbon nanotubes in alfalfa and wheat: toxicology and uptake

    OpenAIRE

    Miralles, Pola; Johnson, Errin; Tamara L. Church; Harris, Andrew T.

    2012-01-01

    Data on the bioavailability and toxicity of carbon nanotubes (CNTs) in the environment, and, in particular, on their interactions with vascular plants, are limited. We investigated the effects of industrial-grade multiwalled CNTs (75 wt% CNTs) and their impurities on alfalfa and wheat. Phytotoxicity assays were performed during both seed germination and seedling growth. The germinations of both species were tolerant of up to 2560 mg l−1 CNTs, and root elongation was enhanced in alfalfa and wh...

  6. From Gutenberg to Berners-Lee: the Need for Metadata

    OpenAIRE

    Simons, Eduard

    2010-01-01

    Keynote at the 1st Workshop on CRIS, CERIF and Institutional Repositories.-- 23 slides Metadata allow us to describe and classify research information in a systematic way, and as such they are indispensable for searching and finding academic publications and other results of research. In order to make full use of the information discovery potential of the Internet, the 'formal' and 'content' metadata commonly used in repositories should be supplemented with the 'context' metadata as stored...

  7. Content Metadata Standards for Marine Science: A Case Study

    Science.gov (United States)

    Riall, Rebecca L.; Marincioni, Fausto; Lightsom, Frances L.

    2004-01-01

    The U.S. Geological Survey developed a content metadata standard to meet the demands of organizing electronic resources in the marine sciences for a broad, heterogeneous audience. These metadata standards are used by the Marine Realms Information Bank project, a Web-based public distributed library of marine science from academic institutions and government agencies. The development and deployment of this metadata standard serve as a model, complete with lessons about mistakes, for the creation of similarly specialized metadata standards for digital libraries.

  8. CMO: Cruise Metadata Organizer for JAMSTEC Research Cruises

    Science.gov (United States)

    Fukuda, K.; Saito, H.; Hanafusa, Y.; Vanroosebeke, A.; Kitayama, T.

    2011-12-01

    JAMSTEC's Data Research Center for Marine-Earth Sciences manages and distributes a wide variety of observational data and samples obtained from JAMSTEC research vessels and deep sea submersibles. Generally, metadata are essential to identify data and samples were obtained. In JAMSTEC, cruise metadata include cruise information such as cruise ID, name of vessel, research theme, and diving information such as dive number, name of submersible and position of diving point. They are submitted by chief scientists of research cruises in the Microsoft Excel° spreadsheet format, and registered into a data management database to confirm receipt of observational data files, cruise summaries, and cruise reports. The cruise metadata are also published via "JAMSTEC Data Site for Research Cruises" within two months after end of cruise. Furthermore, these metadata are distributed with observational data, images and samples via several data and sample distribution websites after a publication moratorium period. However, there are two operational issues in the metadata publishing process. One is that duplication efforts and asynchronous metadata across multiple distribution websites due to manual metadata entry into individual websites by administrators. The other is that differential data types or representation of metadata in each website. To solve those problems, we have developed a cruise metadata organizer (CMO) which allows cruise metadata to be connected from the data management database to several distribution websites. CMO is comprised of three components: an Extensible Markup Language (XML) database, an Enterprise Application Integration (EAI) software, and a web-based interface. The XML database is used because of its flexibility for any change of metadata. Daily differential uptake of metadata from the data management database to the XML database is automatically processed via the EAI software. Some metadata are entered into the XML database using the web

  9. Informing and Evaluating a Metadata Initiative: Usability and Metadata Studies in Minnesota's "Foundations" Project.

    Science.gov (United States)

    Quam, Eileen

    2001-01-01

    Explains Minnesota's Foundations Project, a multiagency collaboration to improve access to environmental and natural resources information. Discusses the use of the Dublin core metadata standard for Web resources and describes three studies that included needs assessment, Bridges Web site user interface, and usability of controlled vocabulary in…

  10. Information resource description creating and managing metadata

    CERN Document Server

    Hider, Philip

    2012-01-01

    An overview of the field of information organization that examines resource description as both a product and process of the contemporary digital environment.This timely book employs the unifying mechanism of the semantic web and the resource description framework to integrate the various traditions and practices of information and knowledge organization. Uniquely, it covers both the domain-specific traditions and practices and the practices of the ?metadata movement' through a single lens ? that of resource description in the broadest, semantic web sense.This approach more readily accommodate

  11. Metadata For Identity Management of Population Registers

    Directory of Open Access Journals (Sweden)

    Olivier Glassey

    2011-04-01

    Full Text Available A population register is an inventory of residents within a country, with their characteristics (date of birth, sex, marital status, etc. and other socio-economic data, such as occupation or education. However, data on population are also stored in numerous other public registers such as tax, land, building and housing, military, foreigners, vehicles, etc. Altogether they contain vast amounts of personal and sensitive information. Access to public information is granted by law in many countries, but this transparency is generally subject to tensions with data protection laws. This paper proposes a framework to analyze data access (or protection requirements, as well as a model of metadata for data exchange.

  12. A standard for measuring metadata quality in spectral libraries

    Science.gov (United States)

    Rasaiah, B.; Jones, S. D.; Bellman, C.

    2013-12-01

    A standard for measuring metadata quality in spectral libraries Barbara Rasaiah, Simon Jones, Chris Bellman RMIT University Melbourne, Australia barbara.rasaiah@rmit.edu.au, simon.jones@rmit.edu.au, chris.bellman@rmit.edu.au ABSTRACT There is an urgent need within the international remote sensing community to establish a metadata standard for field spectroscopy that ensures high quality, interoperable metadata sets that can be archived and shared efficiently within Earth observation data sharing systems. Metadata are an important component in the cataloguing and analysis of in situ spectroscopy datasets because of their central role in identifying and quantifying the quality and reliability of spectral data and the products derived from them. This paper presents approaches to measuring metadata completeness and quality in spectral libraries to determine reliability, interoperability, and re-useability of a dataset. Explored are quality parameters that meet the unique requirements of in situ spectroscopy datasets, across many campaigns. Examined are the challenges presented by ensuring that data creators, owners, and data users ensure a high level of data integrity throughout the lifecycle of a dataset. Issues such as field measurement methods, instrument calibration, and data representativeness are investigated. The proposed metadata standard incorporates expert recommendations that include metadata protocols critical to all campaigns, and those that are restricted to campaigns for specific target measurements. The implication of semantics and syntax for a robust and flexible metadata standard are also considered. Approaches towards an operational and logistically viable implementation of a quality standard are discussed. This paper also proposes a way forward for adapting and enhancing current geospatial metadata standards to the unique requirements of field spectroscopy metadata quality. [0430] BIOGEOSCIENCES / Computational methods and data processing [0480

  13. User's Guide and Metadata to Coastal Biodiversity Risk Analysis Tool (CBRAT): Framework for the Systemization of Life History and Biogeographic Information

    Science.gov (United States)

    ABSTRACTUser’s Guide & Metadata to Coastal Biodiversity Risk Analysis Tool (CBRAT): Framework for the Systemization of Life History and Biogeographic Information(EPA/601/B-15/001, 2015, 123 pages)Henry Lee II, U.S. EPA, Western Ecology DivisionKatharine Marko, U.S. EPA,...

  14. Complete nucleotide sequence of Alfalfa mosaic virus isolated from alfalfa (Medicago sativa L.) in Argentina.

    Science.gov (United States)

    Trucco, Verónica; de Breuil, Soledad; Bejerman, Nicolás; Lenardon, Sergio; Giolitti, Fabián

    2014-06-01

    The complete nucleotide sequence of an Alfalfa mosaic virus (AMV) isolate infecting alfalfa (Medicago sativa L.) in Argentina, AMV-Arg, was determined. The virus genome has the typical organization described for AMV, and comprises 3,643, 2,593, and 2,038 nucleotides for RNA1, 2 and 3, respectively. The whole genome sequence and each encoding region were compared with those of other four isolates that have been completely sequenced from China, Italy, Spain and USA. The nucleotide identity percentages ranged from 95.9 to 99.1 % for the three RNAs and from 93.7 to 99 % for the protein 1 (P1), protein 2 (P2), movement protein and coat protein (CP) encoding regions, whereas the amino acid identity percentages of these proteins ranged from 93.4 to 99.5 %, the lowest value corresponding to P2. CP sequences of AMV-Arg were compared with those of other 25 available isolates, and the phylogenetic analysis based on the CP gene was carried out. The highest percentage of nucleotide sequence identity of the CP gene was 98.3 % with a Chinese isolate and 98.6 % at the amino acid level with four isolates, two from Italy, one from Brazil and the remaining one from China. The phylogenetic analysis showed that AMV-Arg is closely related to subgroup I of AMV isolates. To our knowledge, this is the first report of a complete nucleotide sequence of AMV from South America and the first worldwide report of complete nucleotide sequence of AMV isolated from alfalfa as natural host.

  15. Learning Object Metadata in a Web-Based Learning Environment

    NARCIS (Netherlands)

    Avgeriou, Paris; Koutoumanos, Anastasios; Retalis, Symeon; Papaspyrou, Nikolaos

    2000-01-01

    The plethora and variance of learning resources embedded in modern web-based learning environments require a mechanism to enable their structured administration. This goal can be achieved by defining metadata on them and constructing a system that manages the metadata in the context of the learning

  16. Metadata in the Collaboratory for Multi-Scale Chemical Science

    Energy Technology Data Exchange (ETDEWEB)

    Pancerella, Carmen M.; Hewson, John; Koegler, Wendy S.; Leahy, David; Lee, Michael; Rahn, Larry; Yang, Christine; Myers, James D.; Didier, Brett T.; McCoy, Renata; Schuchardt, Karen L.; Stephan, Eric G.; Windus, Theresa L.; Amin, Kaizer; Bittner, Sandra; Lansing, Carina S.; Minkoff, Michael; Nijsure, Sandeep; von Laszewski, Gregor; Pinzon, Reinhardt; Ruscic, Branko; Wagner, Albert F.; Wang, Baoshan; Pitz, William; Ho, Yen-Ling; Montoya, David W.; Xu, Lili; Allison, Thomas C.; Green, William H.; Frenklach, Michael

    2003-10-02

    The goal of the Collaboratory for the Multi-scale Chemical Sciences (CMCS) [1] is to develop an informatics-based approach to synthesizing multi-scale chemistry information to create knowledge in the chemical sciences. CMCS is using a portal and metadata-aware content store as a base for building a system to support inter-domain knowledge exchange in chemical science. Key aspects of the system include configurable metadata extraction and translation, a core schema for scientific pedigree, and a suite of tools for managing data and metadata and visualizing pedigree relationships between data entries. CMCS metadata is represented using Dublin Core with metadata extensions that are useful to both the chemical science community and the science community in general. CMCS is working with several chemistry groups who are using the system to collaboratively assemble and analyze existing data to derive new chemical knowledge. In this paper we discuss the project’s metadata-related requirements, the relevant software infrastructure, core metadata schema, and tools that use the metadata to enhance science

  17. Forensic devices for activism: Metadata tracking and public proof

    NARCIS (Netherlands)

    van der Velden, L.

    2015-01-01

    The central topic of this paper is a mobile phone application, ‘InformaCam’, which turns metadata from a surveillance risk into a method for the production of public proof. InformaCam allows one to manage and delete metadata from images and videos in order to diminish surveillance risks related to o

  18. Shared Geospatial Metadata Repository for Ontario University Libraries: Collaborative Approaches

    Science.gov (United States)

    Forward, Erin; Leahey, Amber; Trimble, Leanne

    2015-01-01

    Successfully providing access to special collections of digital geospatial data in academic libraries relies upon complete and accurate metadata. Creating and maintaining metadata using specialized standards is a formidable challenge for libraries. The Ontario Council of University Libraries' Scholars GeoPortal project, which created a shared…

  19. Metadata as a means for correspondence on digital media

    NARCIS (Netherlands)

    Stouffs, R.; Kooistra, J.; Tuncer, B.

    2004-01-01

    Metadata derive their action from their association to data and from the relationship they maintain with this data. An interpretation of this action is that the metadata lays claim to the data collection to which it is associated, where the claim is successful if the data collection gains quality as

  20. Metadata Access Tool for Climate and Health

    Science.gov (United States)

    Trtanji, J.

    2012-12-01

    The need for health information resources to support climate change adaptation and mitigation decisions is growing, both in the United States and around the world, as the manifestations of climate change become more evident and widespread. In many instances, these information resources are not specific to a changing climate, but have either been developed or are highly relevant for addressing health issues related to existing climate variability and weather extremes. To help address the need for more integrated data, the Interagency Cross-Cutting Group on Climate Change and Human Health, a working group of the U.S. Global Change Research Program, has developed the Metadata Access Tool for Climate and Health (MATCH). MATCH is a gateway to relevant information that can be used to solve problems at the nexus of climate science and public health by facilitating research, enabling scientific collaborations in a One Health approach, and promoting data stewardship that will enhance the quality and application of climate and health research. MATCH is a searchable clearinghouse of publicly available Federal metadata including monitoring and surveillance data sets, early warning systems, and tools for characterizing the health impacts of global climate change. Examples of relevant databases include the Centers for Disease Control and Prevention's Environmental Public Health Tracking System and NOAA's National Climate Data Center's national and state temperature and precipitation data. This presentation will introduce the audience to this new web-based geoportal and demonstrate its features and potential applications.

  1. A Distributed Metadata Management, Data Discovery and Access System

    CERN Document Server

    Palanisamy, Giriprakash; Green, Jim; Wilson, Bruce

    2010-01-01

    Mercury is a federated metadata harvesting, search and retrieval tool based on both open source and software developed at Oak Ridge National Laboratory. It was originally developed for NASA, and the Mercury development consortium now includes funding from NASA, USGS, and DOE. A major new version of Mercury was developed during 2007. This new version provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, support for RSS delivery of search results, among other features. Mercury provides a single portal to information contained in disparate data management systems. It collects metadata and key data from contributing project servers distributed around the world and builds a centralized index. The Mercury search interfaces then allow the users to perform simple, fielded, spatial and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fa...

  2. A Spatialization-based Method for Checking and Updating Metadata

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    In this paper the application of spatialization technology on metadata quality check and updating was discussed. A new method based on spatialization was proposed for checking and updating metadata to overcome the deficiency of text based methods with the powerful functions of spatial query and analysis provided by GIS software. This method employs the technology of spatialization to transform metadata into a coordinate space and the functions of spatial analysis in GIS to check and update spatial metadata in a visual environment. The basic principle and technical flow of this method were explained in detail, and an example of implementation using ArcMap of GIS software was illustrated with a metadata set of digital raster maps. The result shows the new method with the support of interaction of graph and text is much more intuitive and convenient than the ordinary text based method, and can fully utilize the functions of GIS spatial query and analysis with more accuracy and efficiency.

  3. Managing ebook metadata in academic libraries taming the tiger

    CERN Document Server

    Frederick, Donna E

    2016-01-01

    Managing ebook Metadata in Academic Libraries: Taming the Tiger tackles the topic of ebooks in academic libraries, a trend that has been welcomed by students, faculty, researchers, and library staff. However, at the same time, the reality of acquiring ebooks, making them discoverable, and managing them presents library staff with many new challenges. Traditional methods of cataloging and managing library resources are no longer relevant where the purchasing of ebooks in packages and demand driven acquisitions are the predominant models for acquiring new content. Most academic libraries have a complex metadata environment wherein multiple systems draw upon the same metadata for different purposes. This complexity makes the need for standards-based interoperable metadata more important than ever. In addition to complexity, the nature of the metadata environment itself typically varies slightly from library to library making it difficult to recommend a single set of practices and procedures which would be releva...

  4. METADATA EXPANDED SEMANTICALLY BASED RESOURCE SEARCH IN EDUCATION GRID

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    With the rapid increase of educational resources, how to search for necessary educational resource quickly is one of most important issues. Educational resources have the characters of distribution and heterogeneity, which are the same as the characters of Grid resources. Therefore, the technology of Grid resources search was adopted to implement the educational resources search. Motivated by the insufficiency of currently resources search methods based on metadata, a method of extracting semantic relations between words constituting metadata is proposed. We mainly focus on acquiring synonymy, hyponymy, hypernymy and parataxis relations. In our schema, we extract texts related to metadata that will be expanded from text spatial through text extraction templates. Next, metadata will be obtained through metadata extraction templates. Finally, we compute semantic similarity to eliminate false relations and construct a semantic expansion knowledge base. The proposed method in this paper has been applied on the education grid.

  5. EXIF Custom: Automatic image metadata extraction for Scratchpads and Drupal

    Directory of Open Access Journals (Sweden)

    Ed Baker

    2013-09-01

    Full Text Available Many institutions and individuals use embedded metadata to aid in the management of their image collections. Many deskop image management solutions such as Adobe Bridge and online tools such as Flickr also make use of embedded metadata to describe, categorise and license images. Until now Scratchpads (a data management system and virtual research environment for biodiversity  have not made use of these metadata, and users have had to manually re-enter this information if they have wanted to display it on their Scratchpad site. The Drupal described here allows users to map metadata embedded in their images to the associated field in the Scratchpads image form using one or more customised mappings. The module works seamlessly with the bulk image uploader used on Scratchpads and it is therefore possible to upload hundreds of images easily with automatic metadata (EXIF, XMP and IPTC extraction and mapping.

  6. Interpreting the ASTM 'content standard for digital geospatial metadata'

    Science.gov (United States)

    Nebert, Douglas D.

    1996-01-01

    ASTM and the Federal Geographic Data Committee have developed a content standard for spatial metadata to facilitate documentation, discovery, and retrieval of digital spatial data using vendor-independent terminology. Spatial metadata elements are identifiable quality and content characteristics of a data set that can be tied to a geographic location or area. Several Office of Management and Budget Circulars and initiatives have been issued that specify improved cataloguing of and accessibility to federal data holdings. An Executive Order further requires the use of the metadata content standard to document digital spatial data sets. Collection and reporting of spatial metadata for field investigations performed for the federal government is an anticipated requirement. This paper provides an overview of the draft spatial metadata content standard and a description of how the standard could be applied to investigations collecting spatially-referenced field data.

  7. Making the Case for Embedded Metadata in Digital Images

    DEFF Research Database (Denmark)

    Smith, Kari R.; Saunders, Sarah; Kejser, U.B.

    2014-01-01

    This paper discusses the standards, methods, use cases, and opportunities for using embedded metadata in digital images. In this paper we explain the past and current work engaged with developing specifications, standards for embedding metadata of different types, and the practicalities of data...... exchange in heritage institutions and the culture sector. Our examples and findings support the case for embedded metadata in digital images and the opportunities for such use more broadly in non-heritage sectors as well. We encourage the adoption of embedded metadata by digital image content creators...... and curators as well as those developing software and hardware that support the creation or re-use of digital images. We conclude that the usability of born digital images as well as physical objects that are digitized can be extended and the files preserved more readily with embedded metadata....

  8. Genomic Analysis of Verticillium Wilt Resistance and Drought Tolerance in Alfalfa

    Science.gov (United States)

    Alfalfa (Medicago sativa L.) is the fourth largest crop in the United States. Changing trends to multipurpose uses increases demand for alfalfa. However, the production of alfalfa is challenged by endemic and emerging diseases and adverse environmental factors. Identification of genes/loci controlli...

  9. Stand age affects fertilizer nitrogen response in first-year corn following alfalfa

    Science.gov (United States)

    The amount of N that alfalfa (Medicago sativa L.) provides to subsequent first-year corn (Zea mays L.) depends, in part, on the age of alfalfa at termination. Our objective was to determine how alfalfa stand age affects N availability and fertilizer N requirements for first-year corn. Fertilizer N w...

  10. Modeling feral alfalfa (Medicago sativa subsp. sativa L.) occurrence using topographical and environmental variables

    Science.gov (United States)

    Because alfalfa is a perennial species cross pollinated by bees and can establish along roadsides and ruderal areas, there is concern that feral plants can serve as reservoirs and conduits for transgenic genes. The objective of this study was to survey feral alfalfa in alfalfa seed production areas ...

  11. Enhancing pollination by attracting & retaining leaf cutting bees (Megachile rotundata) in alfalfa seed production fields

    Science.gov (United States)

    The alfalfa leafcutting bee, Megachile rotundata (F.), has become an important managed pollinator of alfalfa, Medicago sativa L. One problem when using alfalfa leafcutting bees as managed pollinator, is the dispersal of many females upon release, even when adequate nesting sites are present. While d...

  12. 75 FR 8299 - Draft Environmental Impact Statement; Determination of Regulated Status of Alfalfa Genetically...

    Science.gov (United States)

    2010-02-24

    ... Regulated Status of Alfalfa Genetically Engineered for Tolerance to the Herbicide Glyphosate AGENCY: Animal... and Forage Genetics International alfalfa lines designated as events J101 and J163 as regulated... determination on the status of the Monsanto Company and Forage Genetics International alfalfa lines...

  13. Pythium species causing damping-off of alfalfa in Minnesota: Identification, pathogenicity and fungicide sensitivity

    Science.gov (United States)

    Damping-off and seed rot is an important disease of alfalfa, severely affecting stand establishment when conditions favor the disease. Globally, 15 Pythium species are reported to cause damping-off and seed rot of alfalfa, although surveys of species causing disease on alfalfa in Minnesota are lacki...

  14. Do glyphosate resistant feral plants and hay fields spread the transgene to conventional alfalfa seed fields?

    Science.gov (United States)

    In addition to meeting domestic needs, large amounts of alfalfa seed and hay produced in the US are being exported overseas. Because alfalfa is an insect pollinated crop, gene flow is a concern. Adding to this alfalfa readily naturalizes along roadsides, irrigation ditches, and unmanaged habitats; a...

  15. Transgene movement in commercial alfalfa seed production: Implications for seed purity

    Science.gov (United States)

    The United States is a major exporter of alfalfa seed and hay and the organic dairy industry is one of the fastest growing agricultural sectors. With the advent of genetically-engineered (GE) alfalfa concerns have risen regarding the coexistence of GE and non GE alfalfa since the crop is largely ou...

  16. 76 FR 5780 - Determination of Regulated Status of Alfalfa Genetically Engineered for Tolerance to the...

    Science.gov (United States)

    2011-02-02

    ... Animal and Plant Health Inspection Service Determination of Regulated Status of Alfalfa Genetically... regulated status of alfalfa genetically engineered for tolerance to the herbicide glyphosate based on APHIS... decision and determination on the petition regarding the regulated status of alfalfa genetically...

  17. 75 FR 1585 - Draft Environmental Impact Statement; Determination of Regulated Status of Alfalfa Genetically...

    Science.gov (United States)

    2010-01-12

    ... Regulated Status of Alfalfa Genetically Engineered for Tolerance to the Herbicide Glyphosate AGENCY: Animal... determination on the status of the Monsanto Company and Forage Genetics International alfalfa lines designated... Monsanto/Forage Genetics International (FGI) alfalfa events J101 and J163 were no longer...

  18. Gas, Stars, and Star Formation in Alfalfa Dwarf Galaxies

    Science.gov (United States)

    Huang, Shan; Haynes, Martha P.; Giovanelli, Riccardo; Brinchmann, Jarle; Stierwalt, Sabrina; Neff, Susan G.

    2012-01-01

    We examine the global properties of the stellar and Hi components of 229 low H i mass dwarf galaxies extracted from the ALFALFA survey, including a complete sample of 176 galaxies with H i masses ALFALFA dwarfs are faint and of low surface brightness; only 56% of those within the SDSS footprint have a counterpart in the SDSS spectroscopic survey. A large fraction of the dwarfs have high specific star formation rates (SSFRs), and estimates of their SFRs and M* obtained by SED fitting are systematically smaller than ones derived via standard formulae assuming a constant SFR. The increased dispersion of the SSFR distribution at M* approximately less than10(exp 8)M(sub 0) is driven by a set of dwarf galaxies that have low gas fractions and SSFRs; some of these are dE/dSphs in the Virgo Cluster. The imposition of an upper Hi mass limit yields the selection of a sample with lower gas fractions for their M* than found for the overall ALFALFA population. Many of the ALFALFA dwarfs, particularly the Virgo members, have H i depletion timescales shorter than a Hubble time. An examination of the dwarf galaxies within the full ALFALFA population in the context of global star formation (SF) laws is consistent with the general assumptions that gas-rich galaxies have lower SF efficiencies than do optically selected populations and that Hi disks are more extended than stellar ones.

  19. Multiwalled carbon nanotubes in alfalfa and wheat: toxicology and uptake.

    Science.gov (United States)

    Miralles, Pola; Johnson, Errin; Church, Tamara L; Harris, Andrew T

    2012-12-07

    Data on the bioavailability and toxicity of carbon nanotubes (CNTs) in the environment, and, in particular, on their interactions with vascular plants, are limited. We investigated the effects of industrial-grade multiwalled CNTs (75 wt% CNTs) and their impurities on alfalfa and wheat. Phytotoxicity assays were performed during both seed germination and seedling growth. The germinations of both species were tolerant of up to 2560 mg l(-1) CNTs, and root elongation was enhanced in alfalfa and wheat seedlings exposed to CNTs. Remarkably, catalyst impurities also enhanced root elongation in alfalfa seedlings as well as wheat germination. Thus the impurities, not solely the CNTs, impacted the plants. CNT internalization by plants was investigated using electron microscopy and two-dimensional Raman mapping. The latter showed that CNTs were adsorbed onto the root surfaces of alfalfa and wheat without significant uptake or translocation. Electron microscopy investigations of internalization were inconclusive owing to poor contrast, so Fe(3)O(4)-functionalized CNTs were prepared and studied using energy-filter mapping of Fe(3)O(4). CNTs bearing Fe(3)O(4) nanoparticles were detected in the epidermis of one wheat root tip only, suggesting that internalization was possible but unusual. Thus, alfalfa and wheat tolerated high concentrations of industrial-grade multiwalled CNTs, which adsorbed onto their roots but were rarely taken up.

  20. INFLUENCES OF LIMING ON YIELDS OF ALFALFA HAY

    Directory of Open Access Journals (Sweden)

    Svetislav Popović

    2009-06-01

    Full Text Available Alfalfa is the most important forage legume on cultivated fields in Croatia (about 45000 ha of growing area – status 2003. The field experiment with application of four dolomite (Agrovapno MgO: 56% CaO and 40% MgO rates (0, 10, 20, 30 and 40 tha-1 were conducted in autumn of 2004. The experiment was conducted by randomized block design in four replicates. Alfalfa (cultivar Osječanka 88 of the Agricultural Institute Osijek, Croatia was sown on March 25, 2005. Four cuttings / year were made. Fresh mass of alfalfa (cutting area 0.25 m2 was oven-dried at 65 oC. Year was the most influencing factor of alfalfa hay yields (13.03, 28.63, 29.43 and 32.77 tha-1, for 2005, 2006, 2007 and 2008, respectively. Liming resulted in low increases of yields up to 5% only. We presume that possible high tolerance of Osječanka 88 cultivar to soil acidity could be the main reason of low effects of liming on alfalfa yields.

  1. Multiple centroid method to evaluate the adaptability of alfalfa genotypes

    Directory of Open Access Journals (Sweden)

    Moysés Nascimento

    2015-02-01

    Full Text Available This study aimed to evaluate the efficiency of multiple centroids to study the adaptability of alfalfa genotypes (Medicago sativa L.. In this method, the genotypes are compared with ideotypes defined by the bissegmented regression model, according to the researcher's interest. Thus, genotype classification is carried out as determined by the objective of the researcher and the proposed recommendation strategy. Despite the great potential of the method, it needs to be evaluated under the biological context (with real data. In this context, we used data on the evaluation of dry matter production of 92 alfalfa cultivars, with 20 cuttings, from an experiment in randomized blocks with two repetitions carried out from November 2004 to June 2006. The multiple centroid method proved efficient for classifying alfalfa genotypes. Moreover, it showed no unambiguous indications and provided that ideotypes were defined according to the researcher's interest, facilitating data interpretation.

  2. Adaptability of Alfalfa and Ryegrass to New Reclamation Materials

    Institute of Scientific and Technical Information of China (English)

    WANG ZHAO-FENG; ZHANG Lei-na; FENG Yong-jun; KANG Jing-tao

    2006-01-01

    This paper discussed the adaptability of the alfalfa and ryegrass to the new artificial soil that was composed of fly ash and furfural residue. The potted experiments were taken to compare the growth conditions, yields, and qualities of both grasses. Some pots were covered with wheat stalks and others without. The medium Fluvo-aquic soil was taken as control. The results indicated that the growth of two grasses in the mixture were inferior to their growth in the control in initial period. With the leaching of rain and irrigation, the two grasses improved gradually. The alfalfa and ryegrass both could grow in the new mixture, and the ryegrass would be better to plant in no covered material and the alfalfa in covered. This will be a new way to reclaim subsided land and to improve the environment in mining area.

  3. Evolution of the ATLAS Metadata Interface (AMI)

    CERN Document Server

    Odier, Jerome; The ATLAS collaboration; Fulachier, Jerome; Lambert, Fabian

    2015-01-01

    The ATLAS Metadata Interface (AMI) can be considered to be a mature application because it has existed for at least 10 years. Over the years, the number of users and the number of functions provided for these users has increased. It has been necessary to adapt the hardware infrastructure in a seamless way so that the Quality of Service remains high. We will describe the evolution of the application from the initial one, using single server with a MySQL backend database, to the current state, where we use a cluster of Virtual Machines on the French Tier 1 Cloud at Lyon, an ORACLE database backend also at Lyon, with replication to CERN using ORACLE streams behind a back-up server.

  4. Meta-data based mediator generation

    Energy Technology Data Exchange (ETDEWEB)

    Critchlaw, T

    1998-06-28

    Mediators are a critical component of any data warehouse; they transform data from source formats to the warehouse representation while resolving semantic and syntactic conflicts. The close relationship between mediators and databases requires a mediator to be updated whenever an associated schema is modified. Failure to quickly perform these updates significantly reduces the reliability of the warehouse because queries do not have access to the most current data. This may result in incorrect or misleading responses, and reduce user confidence in the warehouse. Unfortunately, this maintenance may be a significant undertaking if a warehouse integrates several dynamic data sources. This paper describes a meta-data framework, and associated software, designed to automate a significant portion of the mediator generation task and thereby reduce the effort involved in adapting to schema changes. By allowing the DBA to concentrate on identifying the modifications at a high level, instead of reprogramming the mediator, turnaround time is reduced and warehouse reliability is improved.

  5. Metadata salad at the Cordoba Observatory

    CERN Document Server

    Lencinas, Verónica

    2016-01-01

    The Plate Archive of the Cordoba Observatory includes 20.000 photographs and spectra on glass plates dating from 1893 to 1983. This contribution describes the work performed since the plate archive was transferred to the Observatory Library in 2011. In 2014 an interdisciplinary team was assembled and a research grant from the National University of Cordoba was obtained with the objectives of preserving the glass plates and generate public access for astronomers and other audiences. The preservation work not only includes practical intervention to improve conservation conditions for the whole archive, but also a diagnose of the preservation conditions for the plates and identification of best practices for cleaning the plates. The access envisioned through digitization requires not only the scanning of all the plates, but also careful definition and provision of metadata. In this regard, each institutional level involved -in this case: archive, library, astronomical observatory and public university - demands ...

  6. A Highly Available Grid Metadata Catalog

    DEFF Research Database (Denmark)

    Jensen, Henrik Thostrup; Kleist, Joshva

    2009-01-01

    This article presents a metadata catalog, intended foruse in grids. The catalog provides high availability, by replication across several hosts. The replicas are kept consistent using a replication protocol based on the Paxos algorithm. A majority of the replicas must be available in order...... for the system to function. The data model used in the catalog is RDF, which allows users to create theirown name spaces and schemas. Querying is performed using SPARQL. Additionally the catalog can be used as a synchronization mechanism, by utilizing a compare and swap operation. The catalog is accessed using...... HTTP with proxy certificates, and uses GACL for flexible access control.The performance of the catalog is tested in several ways, including a distributed setup between geographically separated sites....

  7. SEMANTIC METADATA FOR HETEROGENEOUS SPATIAL PLANNING DOCUMENTS

    Directory of Open Access Journals (Sweden)

    A. Iwaniak

    2016-09-01

    Full Text Available Spatial planning documents contain information about the principles and rights of land use in different zones of a local authority. They are the basis for administrative decision making in support of sustainable development. In Poland these documents are published on the Web according to a prescribed non-extendable XML schema, designed for optimum presentation to humans in HTML web pages. There is no document standard, and limited functionality exists for adding references to external resources. The text in these documents is discoverable and searchable by general-purpose web search engines, but the semantics of the content cannot be discovered or queried. The spatial information in these documents is geographically referenced but not machine-readable. Major manual efforts are required to integrate such heterogeneous spatial planning documents from various local authorities for analysis, scenario planning and decision support. This article presents results of an implementation using machine-readable semantic metadata to identify relationships among regulations in the text, spatial objects in the drawings and links to external resources. A spatial planning ontology was used to annotate different sections of spatial planning documents with semantic metadata in the Resource Description Framework in Attributes (RDFa. The semantic interpretation of the content, links between document elements and links to external resources were embedded in XHTML pages. An example and use case from the spatial planning domain in Poland is presented to evaluate its efficiency and applicability. The solution enables the automated integration of spatial planning documents from multiple local authorities to assist decision makers with understanding and interpreting spatial planning information. The approach is equally applicable to legal documents from other countries and domains, such as cultural heritage and environmental management.

  8. Semantic Metadata for Heterogeneous Spatial Planning Documents

    Science.gov (United States)

    Iwaniak, A.; Kaczmarek, I.; Łukowicz, J.; Strzelecki, M.; Coetzee, S.; Paluszyński, W.

    2016-09-01

    Spatial planning documents contain information about the principles and rights of land use in different zones of a local authority. They are the basis for administrative decision making in support of sustainable development. In Poland these documents are published on the Web according to a prescribed non-extendable XML schema, designed for optimum presentation to humans in HTML web pages. There is no document standard, and limited functionality exists for adding references to external resources. The text in these documents is discoverable and searchable by general-purpose web search engines, but the semantics of the content cannot be discovered or queried. The spatial information in these documents is geographically referenced but not machine-readable. Major manual efforts are required to integrate such heterogeneous spatial planning documents from various local authorities for analysis, scenario planning and decision support. This article presents results of an implementation using machine-readable semantic metadata to identify relationships among regulations in the text, spatial objects in the drawings and links to external resources. A spatial planning ontology was used to annotate different sections of spatial planning documents with semantic metadata in the Resource Description Framework in Attributes (RDFa). The semantic interpretation of the content, links between document elements and links to external resources were embedded in XHTML pages. An example and use case from the spatial planning domain in Poland is presented to evaluate its efficiency and applicability. The solution enables the automated integration of spatial planning documents from multiple local authorities to assist decision makers with understanding and interpreting spatial planning information. The approach is equally applicable to legal documents from other countries and domains, such as cultural heritage and environmental management.

  9. DEAM:Decoupled, Expressive, Area-Efficient Metadata Cache

    Institute of Scientific and Technical Information of China (English)

    ‘刘鹏; 方磊; 黄巍

    2014-01-01

    Chip multiprocessor presents brand new opportunities for holistic on-chip data and coherence management solutions. An intelligent protocol should be adaptive to the fine-grain accessing behavior. And in terms of storage of metadata, the size of conventional directory grows as the square of the number of processors, making it very expensive in large-scale systems. In this paper, we propose a metadata cache framework to achieve three goals: 1) reducing the latency of data access and coherence activities, 2) saving the storage of metadata, and 3) providing support for other optimization techniques. The metadata is implemented with compact structures and tracks the dynamically changing access pattern. The pattern information is used to guide the delegation and replication of decoupled data and metadata to allow fast access. We also use our metadata cache as a building block to enhance stream prefetching. Using detailed execution-driven simulation, we demonstrate that our protocol achieves an average speedup of 1.12X compared with a shared cache protocol with 1/5 of the storage of metadata.

  10. Design and Implementation of a Metadata-rich File System

    Energy Technology Data Exchange (ETDEWEB)

    Ames, S; Gokhale, M B; Maltzahn, C

    2010-01-19

    Despite continual improvements in the performance and reliability of large scale file systems, the management of user-defined file system metadata has changed little in the past decade. The mismatch between the size and complexity of large scale data stores and their ability to organize and query their metadata has led to a de facto standard in which raw data is stored in traditional file systems, while related, application-specific metadata is stored in relational databases. This separation of data and semantic metadata requires considerable effort to maintain consistency and can result in complex, slow, and inflexible system operation. To address these problems, we have developed the Quasar File System (QFS), a metadata-rich file system in which files, user-defined attributes, and file relationships are all first class objects. In contrast to hierarchical file systems and relational databases, QFS defines a graph data model composed of files and their relationships. QFS incorporates Quasar, an XPATH-extended query language for searching the file system. Results from our QFS prototype show the effectiveness of this approach. Compared to the de facto standard, the QFS prototype shows superior ingest performance and comparable query performance on user metadata-intensive operations and superior performance on normal file metadata operations.

  11. A Pan-European and Cross-Discipline Metadata Portal

    Science.gov (United States)

    Widmann, Heinrich; Thiemann, Hannes; Lautenschlager, Michael

    2014-05-01

    In recent years, significant investments have been made to create a pan-European e-infrastructure supporting multiple and diverse research communities. This led to the establishment of the community-driven European Data Infrastructure (EUDAT) project that implements services to tackle the specific challenges of international and interdisciplinary research data management. The EUDAT metadata service B2FIND plays a central role in this context as a repository and a search portal for the diverse metadata collected from heterogeneous sources. For this we built up a comprehensive joint metadata catalogue and an open data portal and offer support for new communities interested in publishing their data within EUDAT. The implemented metadata ingestion workflow consists in three steps. First the metadata records - provided either by various research communities or via other EUDAT services - are harvested. Afterwards the raw metadata records are converted and mapped to unified key-value dictionaries. The semantic mapping of the non-uniform community specific metadata to homogenous structured datasets is hereby the most subtle and challenging task. Finally the mapped records are uploaded as datasets to the catalogue and displayed in the portal. The homogenisation of the different community specific data models and vocabularies enables not only the unique presentation of these datasets as tables of field-value pairs but also the faceted, spatial and temporal search in the B2FIND metadata portal. Furthermore the service provides transparent access to the scientific data objects through the given references in the metadata. We present here the functionality and the features of the B2FIND service and give an outlook of further developments.

  12. Evaluation of ensilage potential of alfalfa cultivars (Medicago sativa L.)

    OpenAIRE

    Monteiro, ALG; Costa,Ciniro; Arrigoni, M. D.

    1998-01-01

    The objective of this trial was to study the ensilage potential of alfalfa (Medicago sativa L,.). The material used in the evaluation was harvested from an experiment in a complete randomized blocks design with three replicates, with seventeen alfalfa cultivars, Criouil, Florida 77, P555, P581, Moapa, Gilboa, 34 Linea, C/W 8754, C/W 4468, C/W 86, C/W 8746, Hunter Field, Trifecta, Sequel, CUF 101, Aurora e Siriver, during three years. The harvest used for the determinations was collected at 30...

  13. Differential Pathogenicity of Four Pratylenchus neglectus Populations on Alfalfa

    OpenAIRE

    1991-01-01

    A Pratylenchus neglectus population from lltah (UT3) was more virulent to Lahontan alfalfa than other P. neglectus populations from Utah (UT1, UT2) and Wyoming (WY). All alfalfa plants survived at 24 ± 3 C when inoculated with WY, UT1, or UT2 at initial populations (Pi) of 500, 1,000, and 5,000 nematodes per plant. At Pi 10,000 with WY, UT1, or UT2, plant mortality was 15, 15, and 20%, respectively; at Pi 5,000 and 10,000 with UT3, plant mortality was 10 and 40%. The WY, UT1, and UT2 populati...

  14. Metadata Evaluation and Improvement: Evolving Analysis and Reporting

    Science.gov (United States)

    Habermann, Ted; Kozimor, John; Gordon, Sean

    2017-01-01

    ESIP Community members create and manage a large collection of environmental datasets that span multiple decades, the entire globe, and many parts of the solar system. Metadata are critical for discovering, accessing, using and understanding these data effectively and ESIP community members have successfully created large collections of metadata describing these data. As part of the White House Big Earth Data Initiative (BEDI), ESDIS has developed a suite of tools for evaluating these metadata in native dialects with respect to recommendations from many organizations. We will describe those tools and demonstrate evolving techniques for sharing results with data providers.

  15. Metadata in Chaos: how researchers tag radio broadcasts

    DEFF Research Database (Denmark)

    Lykke, Marianne; Lund, Haakon; Skov, Mette

    2015-01-01

    is to provide access to broadcasts and provide tools to segment and manage concrete segments of radio broadcasts. Although the assigned metadata are project-specific, they serve as invaluable access points for fellow researchers due to their factual and neutral nature. The researchers particularly stress LARM.fm...... apply the metadata scheme in their research work. The study consists of two studies, a) a qualitative study of subjects and vocabulary of the applied metadata and annotations, and 5 semi-structured interviews about goals for tagging. The findings clearly show that the primary role of LARM.fm...

  16. Publishing NASA Metadata as Linked Open Data for Semantic Mashups

    Science.gov (United States)

    Wilson, Brian; Manipon, Gerald; Hua, Hook

    2014-05-01

    Data providers are now publishing more metadata in more interoperable forms, e.g. Atom or RSS 'casts', as Linked Open Data (LOD), or as ISO Metadata records. A major effort on the part of the NASA's Earth Science Data and Information System (ESDIS) project is the aggregation of metadata that enables greater data interoperability among scientific data sets regardless of source or application. Both the Earth Observing System (EOS) ClearingHOuse (ECHO) and the Global Change Master Directory (GCMD) repositories contain metadata records for NASA (and other) datasets and provided services. These records contain typical fields for each dataset (or software service) such as the source, creation date, cognizant institution, related access URL's, and domain and variable keywords to enable discovery. Under a NASA ACCESS grant, we demonstrated how to publish the ECHO and GCMD dataset and services metadata as LOD in the RDF format. Both sets of metadata are now queryable at SPARQL endpoints and available for integration into "semantic mashups" in the browser. It is straightforward to reformat sets of XML metadata, including ISO, into simple RDF and then later refine and improve the RDF predicates by reusing known namespaces such as Dublin core, georss, etc. All scientific metadata should be part of the LOD world. In addition, we developed an "instant" drill-down and browse interface that provides faceted navigation so that the user can discover and explore the 25,000 datasets and 3000 services. The available facets and the free-text search box appear in the left panel, and the instantly updated results for the dataset search appear in the right panel. The user can constrain the value of a metadata facet simply by clicking on a word (or phrase) in the "word cloud" of values for each facet. The display section for each dataset includes the important metadata fields, a full description of the dataset, potentially some related URL's, and a "search" button that points to an Open

  17. Knowledge and Metadata Integration for Warehousing Complex Data

    CERN Document Server

    Ralaivao, Jean-Christian

    2008-01-01

    With the ever-growing availability of so-called complex data, especially on the Web, decision-support systems such as data warehouses must store and process data that are not only numerical or symbolic. Warehousing and analyzing such data requires the joint exploitation of metadata and domain-related knowledge, which must thereby be integrated. In this paper, we survey the types of knowledge and metadata that are needed for managing complex data, discuss the issue of knowledge and metadata integration, and propose a CWM-compliant integration solution that we incorporate into an XML complex data warehousing framework we previously designed.

  18. Effects of alfalfa meal on carcase quality and fat metabolism of Muscovy ducks.

    Science.gov (United States)

    Jiang, J F; Song, X M; Huang, X; Wu, J L; Zhou, W D; Zheng, H C; Jiang, Y Q

    2012-01-01

    1. The effects of alfalfa meal on carcase quality and fat metabolism of Muscovy duck were evaluated. The objective of this research was to establish whether alfalfa meal can reduce fat content and improve carcase quality of Muscovy duck. Animal products with a high fat content present a risk factor for many diseases. Reducing fat content in poultry products is an important goal for the poultry industry. 2. A total of 240 14-d-old white Muscovy ducks were selected and randomly allocated to 1 of 4 dietary treatments containing 0, 3, 6, and 9% of alfalfa meal for 5 weeks. Growth performances were recorded and carcase characteristics and lipid parameters were analysed. 3. Results showed that 3, 6, and 9% alfalfa meal in diet had no significant effects on growth performance of Muscovy ducks from 14 to 49 d of age. Ducks given 3, 6, and 9% alfalfa meal had significantly higher dressing percentage and lower abdominal fat percentage compared with those given no alfalfa meal. Ducks given 9% alfalfa meal had higher breast meat percentage compared with those given no alfalfa meal. The concentrations of triglyceride, total cholesterol, low density lipoprotein (LDL), very low density lipoprotein (VLDL) and free fatty acid in serum of ducks fed on alfalfa meal decreased. Alfalfa meal in the diet decreased abdominal fat percentage and improved carcase traits of Muscovy duck. 4. The study showed that dietary alfalfa meal decreased abdominal fat percentage and improved carcase traits, without an adverse effect on performance.

  19. Design and Implementation of Two-Level Metadata Server in Small-Scale Cluster File System

    Institute of Scientific and Technical Information of China (English)

    LIU Yuling; YU Hongfen; SONG Weiwei

    2006-01-01

    The reliability and high performance of metadata service is crucial to the store architecture. A novel design of a two-level metadata server file system (TTMFS) is presented, which behaves high reliability and performance. The merits both centralized management and distributed management are considered simultaneously in our design. In this file system, the advanced-metadata server is responsible for manage directory metadata and the whole namespace. The double-metadata server is responsible for maintaining file metadata. And this paper uses the Markov return model to analyze the reliability of the two-level metadata server. The experiment data indicates that the design can provide high throughput.

  20. A framework for basic administrative metadata in digital libraries

    Institute of Scientific and Technical Information of China (English)

    ZHENG; Qiaoying; WANG; Shaoping

    2008-01-01

    Administrative metadata means the expansion of the metadata research to the administrative level of resource development.Based on the basic administrative sections in the information resource lifecycle(IRL),the framework for basic administrative metadata(FBAM)is helpful in constructing open interoperable platforms for acquisition,processing and services of information resources in digital libraries.It facilitates the seamless communication,the cooperative construction and management,and the sharing of digital resources.The formulation of FBAM follows the principles of modularity and openness that promote interoperability in resource management.It also adopts the structured methodology of information system design,with which the FBAM data model is developed in conformity withand PREMIS.The capabilities of FBAM are driven by a metadata repository with administrative information that is contained in FBAM records.

  1. Toward element-level interoperability in bibliographic metadata

    Directory of Open Access Journals (Sweden)

    Eric Childress

    2008-03-01

    Full Text Available This paper discusses an approach and set of tools for translating bibliographic metadata from one format to another. A computational model is proposed to formalize the notion of a 'crosswalk'. The translation process separates semantics from syntax, and specifies a crosswalk as machine executable translation files which are focused on assertions of element equivalence and are closely associated with the underlying intellectual analysis of metadata translation. A data model developed by the authors called Morfrom serves as an internal generic metadata format. Translation logic is written in an XML scripting language designed by the authors called the Semantic Equivalence Expression Language (Seel. These techniques have been built into an OCLC software toolkit to manage large and diverse collections of metadata records, called the Crosswalk Web Service.

  2. Metadata and Metacognition: How can we stimulate reflection for learning?

    NARCIS (Netherlands)

    Specht, Marcus

    2012-01-01

    Specht, M. (2012, 12 September). Metadata and Metacognition: How can we stimulate reflection for learning? Invited presentation given at the seminar on awareness and reflection in learning at the University of Leuven, Leuven, Belgium.

  3. Requirements for multimedia metadata schemes in surveillance applications for security

    NARCIS (Netherlands)

    Rest, J.; Grootjen, F.A.; Grootjen, M.; Wijn, R.; Aarts, O.; Roelofs, M.L.; Burghouts, G.J.; Bouma, H.; Alic, L.; Kraaij, W.

    2014-01-01

    Surveillance for security requires communication between systems and humans, involves behavioural and multimedia research, and demands an objective benchmarking for the performance of system components. Metadata representation schemes are extremely important to facilitate (system) interoperability a

  4. Large geospatial images discovery: metadata model and technological framework

    Directory of Open Access Journals (Sweden)

    Lukáš Brůha

    2015-12-01

    Full Text Available The advancements in geospatial web technology triggered efforts for disclosure of valuable resources of historical collections. This paper focuses on the role of spatial data infrastructures (SDI in such efforts. The work describes the interplay between SDI technologies and potential use cases in libraries such as cartographic heritage. The metadata model is introduced to link up the sources from these two distinct fields. To enhance the data search capabilities, the work focuses on the representation of the content-based metadata of raster images, which is the crucial prerequisite to target the search in a more effective way. The architecture of the prototype system for automatic raster data processing, storage, analysis and distribution is introduced. The architecture responds to the characteristics of input datasets, namely to the continuous flow of very large raster data and related metadata. Proposed solutions are illustrated on the case study of cartometric analysis of digitised early maps and related metadata encoding.

  5. Diversity of field isolates of sinorhizobium meliloti nodulating alfalfa

    Science.gov (United States)

    Most alfalfa seed is treated with a rhizobial inoculant consisting of one or more strains of Sinorhizobium meliloti before planting to enhance nodulation of seedlings. However, little is known about the persistence of inoculated strains later in the season. There is also a paucity of information on ...

  6. Oxidative burst in alfalfa-Sinorhizobium meliloti symbiotic interaction.

    Science.gov (United States)

    Santos, R; Hérouart, D; Sigaud, S; Touati, D; Puppo, A

    2001-01-01

    Reactive oxygen species are produced as an early event in plant defense response against avirulent pathogens. We show here that alfalfa responds to infection with Sinorhizobium meliloti by production of superoxide and hydrogen peroxide. This similarity in the early response to infection by pathogenic and symbiotic bacteria addresses the question of which mechanism rhizobia use to counteract the plant defense response.

  7. Impacts on potential ethanol and crude protein yield in alfalfa

    Science.gov (United States)

    An alfalfa (Medicago sativa L.) biomass energy production system would produce two products. Leaves would be separated from stems to produce a high protein feed for livestock while stems would be processed to produce ethanol. Therefore, maximum yields of both leaves and stems are essential for profi...

  8. Modeling of desorption of Alfalfa (Medicago sativa) stems and leaves.

    NARCIS (Netherlands)

    ArabHosseini, A.; Huisman, W.; Müller, J.

    2011-01-01

    The equilibrium moisture content of agricultural products is necessary to optimize drying process and helps to keep the quality of the product during the period of storage. The main aim of this research was to find the best model which could define well, the exchange of moisture between alfalfa (Med

  9. PHENOTYPIC DIVERSITY OF ALFALFA (MEDICAGO SATIVA L. GERMPLASM

    Directory of Open Access Journals (Sweden)

    Marijana Tucak

    2011-06-01

    Full Text Available The objective of this study was to evaluate phenotypic diversity in the alfalfa germplasm collections using multivariate analysis to examine the extent of genetic diversity and contribution of selected characters to the total diversity and finally to select the most promising clusters/populations for further breeding work. Forty alfalfa populations/cultivars of different geographical origin were evaluated for 12 agro-morphological characters during two consecutive years. The populations/ cultivars were grouped into six clusters. In most cases populations/cultivars within clusters were not associated with their geographical origin. Intercluster distances were larger than the intracluster ones. This research revealed a broad phenotypic diversity within and between the alfalfa germplasm collections. The following characters contributed most to the total phenotypic diversity: dry matter yield in the first production year, plant height and length of central leaflet. Based on the mean value of the evaluated characters and determined distances between clusters, the most promising populations/cultivars belong to the clusters IV and V. Selected populations/cultivars could be considered as a valuable genetic material for the yield and quality improvement of alfalfa in our breeding programme.

  10. Evaluation of alfalfa-tall fescue mixtures across multiple environments

    Science.gov (United States)

    Binary grass-legume mixtures can benefit forage production systems in different ways helping growers cope both with increasing input costs (e.g., N fertilizer, herbicides) and potentially more variable weather. The main objective of this study was to evaluate alfalfa (Medicago sativa L.) and tall f...

  11. Lignin modification leads to increased nodule numbers in alfalfa.

    Science.gov (United States)

    Gallego-Giraldo, Lina; Bhattarai, Kishor; Pislariu, Catalina I; Nakashima, Jin; Jikumaru, Yusuke; Kamiya, Yuji; Udvardi, Michael K; Monteros, Maria J; Dixon, Richard A

    2014-03-01

    Reduction of lignin levels in the forage legume alfalfa (Medicago sativa) by down-regulation of the monolignol biosynthetic enzyme hydroxycinnamoyl coenzyme A:shikimate hydroxycinnamoyl transferase (HCT) results in strongly increased digestibility and processing ability of lignocellulose. However, these modifications are often also associated with dwarfing and other changes in plant growth. Given the importance of nitrogen fixation for legume growth, we evaluated the impact of constitutively targeted lignin modification on the belowground organs (roots and nodules) of alfalfa plants. HCT down-regulated alfalfa plants exhibit a striking reduction in root growth accompanied by an unexpected increase in nodule numbers when grown in the greenhouse or in the field. This phenotype is associated with increased levels of gibberellins and certain flavonoid compounds in roots. Although HCT down-regulation reduced biomass yields in both the greenhouse and field experiments, the impact on the allocation of nitrogen to shoots or roots was minimal. It is unlikely, therefore, that the altered growth phenotype of reduced-lignin alfalfa is a direct result of changes in nodulation or nitrogen fixation efficiency. Furthermore, HCT down-regulation has no measurable effect on carbon allocation to roots in either greenhouse or 3-year field trials.

  12. Strategies for managing foliar and root rot diseases of alfalfa

    Science.gov (United States)

    Diseases can be a major source of yield loss and stand decline in alfalfa. Surveys were conducted to determine the distribution of pathogens for which there is limited resistance in commercial varieties and tests were done with new crop chemicals to determine their effectiveness in controlling sever...

  13. Impact of preceding crop on alfalfa competitiveness with weeds

    Science.gov (United States)

    Organic producers would like to include no-till practices in their farming systems. We are seeking to develop a continuous no-till system for organic farming, based on a complex rotation that includes a 3-year sequence of alfalfa. In this study, we evaluated impact of preceding crop on weed infest...

  14. Paternity testing in an autotetraploid alfalfa breeding polycross

    Science.gov (United States)

    Determining unknown parentage in autotetraploid alfalfa (Medicago sativa L.) (2n = 4x = 32) can improve breeding gains. Exclusion analysis based paternity testing SAS code is presented, amenable to genotyping errors, for autotetraploid species utilizing co-dominant molecular markers with ambiguous d...

  15. Managing puncturevine in alfalfa hay and along field edges

    Science.gov (United States)

    Puncturevine (Tribulus terrestris) is a nuisance and difficult to control weed in alfalfa hay field edges and borders. Puncturevine contaminated hay can contain high levels of nitrates and burs can injure mouths of livestock, lowering the value and quality of the hay. Puncturevine is a summer annual...

  16. PERACETIC ACID PRETREATMENT OF ALFALFA STEM AND ASPEN BIOMASS

    Directory of Open Access Journals (Sweden)

    Lei Xu,

    2011-11-01

    Full Text Available Alfalfa stems and ground aspen were exposed to peracetic acid (0.5 to 9% on biomass at temperatures ranging from 40 to 100° C and reaction times from 1 to 5 hours. Glucose release as a percentage of total cellulose content was determined using subsequent standard enzymatic hydrolysis. Statistical analysis confirmed that aspen showed a strong response to peracetic acid addition rate. 9% peracetic acid removed 14% of the original lignin and increased the rate of glucose release from 23% to 44%. Temperature and reaction time played a less significant role. For alfalfa stems, low levels of peractic acid (0.5% increased glucose release from 30 to 47%. The addition of larger doses of peracetic acid did not show any significant improvement; this effect appears to be closely related to rate of lignin removal. While peracetic acid effectively removed lignin from aspen, 98% of the original lignin was still present in alfalfa after higher level peracetic acid treatments; the yield loss observed during pretreatment of alfalfa stems originates from other biomass components.

  17. Characterization of alfalfa populations contrasting for root system architecture (RSA)

    Science.gov (United States)

    The root system architecture affects the capacity for nutrient and water uptake thus impacting biomass yield production and may contribute to the persistence of perennial plants. The objectives of this study were to phenotype the roots of three alfalfa populations and identify differences between di...

  18. Using Metadata Description for Agriculture and Aquaculture Papers

    Directory of Open Access Journals (Sweden)

    P. Šimek, J. Vaněk, V. Očenášek, M. Stočes, T. Vogeltanzova

    2012-12-01

    Full Text Available The paper deals with the most used metadata formats and thesauri suitable for describing scientific and research papers in the domains agriculture, food industry, aquaculture, environment and rural areas. These include the Dublin Core (DC, Metadata Object Description Schema (MODS, Virtual Open Access Agriculture and Aquaculture Repository Metadata Application Profile (VOA3R AP and the AGROVOC thesaurus. Having analyzed the metadata formats and research paper lifecycle, the authors would recommend that each paper should entail metadata description as soon as it is published. The metadata are to describe the content and properties of the paper. One of the most suitable metadata formats is the VOA3R AP that is partially patterned on the DC and combined with the AGROVOC thesaurus. As a result, an effective description, availability and automatic data exchange between and among local and central repositories should be attained.The knowledge and data presented in the present paper were obtained as a result of the following research programs and grant schemes: the Grant No. 20121044 of the Internal Grant Agency titled „Using Automatic Metadata Generation for Research Papers“, the Grant agreement No. 250525 funded by the European Commission corresponding to the VOA3R Project (Virtual Open Access Agriculture & Aquaculture Repository: Sharing Scientific and Scholarly Research related to Agriculture, Food, and Environment, http://voa3r.eu and the Research Program titled „Economy of the Czech Agriculture Resources and their Efficient Use within the Framework of the Multifunctional Agrifood Systems“ of the Czech Ministry of Education, Youth and Sport number VZ MSM 6046070906.

  19. Massive Meta-Data: A New Data Mining Resource

    Science.gov (United States)

    Hugo, W.

    2012-04-01

    Worldwide standardisation, and interoperability initiatives such as GBIF, Open Access and GEOSS (to name but three of many) have led to the emergence of interlinked and overlapping meta-data repositories containing, potentially, tens of millions of entries collectively. This forms the backbone of an emerging global scientific data infrastructure that is both driven by changes in the way we work, and opens up new possibilities in management, research, and collaboration. Several initiatives are concentrated on building a generalised, shared, easily available, scalable, and indefinitely preserved scientific data infrastructure to aid future scientific work. This paper deals with the parallel aspect of the meta-data that will be used to support the global scientific data infrastructure. There are obvious practical issues (semantic interoperability and speed of discovery being the most important), but we are here more concerned with some of the less obvious conceptual questions and opportunities: 1. Can we use meta-data to assess, pinpoint, and reduce duplication of meta-data? 2. Can we use it to reduce overlaps of mandates in data portals, research collaborations, and research networks? 3. What possibilities exist for mining the relationships that exist implicitly in very large meta-data collections? 4. Is it possible to define an explicit 'scientific data infrastructure' as a complex, multi-relational network database, that can become self-maintaining and self-organising in true Web 2.0 and 'social networking' fashion? The paper provides a blueprint for a new approach to massive meta-data collections, and how this can be processed using established analysis techniques to answer the questions posed. It assesses the practical implications of working with standard meta-data definitions (such as ISO 19115, Dublin Core, and EML) in a meta-data mining context, and makes recommendations in respect of extension to support self-organising, semantically oriented 'networks of

  20. Metadata and Data Quality Problems in the Digital Library

    OpenAIRE

    Beall, Jeffrey

    2006-01-01

    This paper describes the main types of data quality errors that occur in digital libraries, both in full-text objects and in metadata. Studying these errors is important because they can block access to online documents and because digital libraries should eliminate errors where possible. Some types of common errors include typographical errors, scanning and data conversion errors, and find and replace errors. Errors in metadata can also hinder access in digital libraries. The paper also disc...

  1. A Metadata Schema for Geospatial Resource Discovery Use Cases

    Directory of Open Access Journals (Sweden)

    Darren Hardy

    2014-07-01

    Full Text Available We introduce a metadata schema that focuses on GIS discovery use cases for patrons in a research library setting. Text search, faceted refinement, and spatial search and relevancy are among GeoBlacklight's primary use cases for federated geospatial holdings. The schema supports a variety of GIS data types and enables contextual, collection-oriented discovery applications as well as traditional portal applications. One key limitation of GIS resource discovery is the general lack of normative metadata practices, which has led to a proliferation of metadata schemas and duplicate records. The ISO 19115/19139 and FGDC standards specify metadata formats, but are intricate, lengthy, and not focused on discovery. Moreover, they require sophisticated authoring environments and cataloging expertise. Geographic metadata standards target preservation and quality measure use cases, but they do not provide for simple inter-institutional sharing of metadata for discovery use cases. To this end, our schema reuses elements from Dublin Core and GeoRSS to leverage their normative semantics, community best practices, open-source software implementations, and extensive examples already deployed in discovery contexts such as web search and mapping. Finally, we discuss a Solr implementation of the schema using a "geo" extension to MODS.

  2. Surviving the Transition from FGDC to ISO Metadata Standards

    Science.gov (United States)

    Fox, C. G.; Milan, A.; Sylvester, D.; Habermann, T.; Kozimor, J.; Froehlich, D.

    2008-12-01

    The NOAA Metadata Manager and Repository (NMMR) has served a well established group of data managers at NOAA's National Data Centers for over a decade. It provides a web interface for managing FGDC compliant metadata and publishing that metadata to several large data discovery systems (GeoSpatial One-Stop, NASA's Global Change Master Directory, the Comprehensive Large-Array data Stewardship System, and FirstGov). The Data Center's are now faced with migration of these metadata to new International Metadata Standards (ISO 19115, 19115-2, "). We would like to accomplish this migration while minimizing disruption to the current users and supporting significant new capabilities of the ISO standards. Our current approach involves relational ISO views on top of the existing XML database to convert FGDC content into ISO without changing the data manager interface. These views are the foundation for ISO- compliant XML metadata access via REST-like web services. Additionally, new database tables provide information required by ISO that is not included in the FGDC standard. This approach allows us to support the new standard without disrupting the current system.

  3. Forensic devices for activism: Metadata tracking and public proof

    Directory of Open Access Journals (Sweden)

    Lonneke van der Velden

    2015-10-01

    Full Text Available The central topic of this paper is a mobile phone application, ‘InformaCam’, which turns metadata from a surveillance risk into a method for the production of public proof. InformaCam allows one to manage and delete metadata from images and videos in order to diminish surveillance risks related to online tracking. Furthermore, it structures and stores the metadata in such a way that the documentary material becomes better accommodated to evidentiary settings, if needed. In this paper I propose InformaCam should be interpreted as a ‘forensic device’. By using the conceptualization of forensics and work on socio-technical devices the paper discusses how InformaCam, through a range of interventions, rearranges metadata into a technology of evidence. InformaCam explicitly recognizes mobile phones as context aware, uses their sensors, and structures metadata in order to facilitate data analysis after images are captured. Through these modifications it invents a form of ‘sensory data forensics'. By treating data in this particular way, surveillance resistance does more than seeking awareness. It becomes engaged with investigatory practices. Considering the extent by which states conduct metadata surveillance, the project can be seen as a timely response to the unequal distribution of power over data.

  4. Organizing Internet Resources and the Development of Metadata

    Directory of Open Access Journals (Sweden)

    Hsueh-Hua Chen

    1997-12-01

    Full Text Available There exist lots of differences between information resources on the Internet and those in the traditional libraries. In order to retrieve and utilize digital information effectively in the coming era of information network, libraries have to explore how Internet resources are organized. Using search engines and subject gateway services are two common ways to retrieve and utilize Internet resources. Search engines are based on robot to extract metadata, which are automatic and are cheap to create. Subject gateway services add value through intellectual effort, and are correspondingly expensive. But neither approach is complete as users are interested in resources at various levels of granularity and aggregation which may not be satisfied by either of these two simplified approaches. In order to use the Internet resources effectively, the establishment of metadata is very important.This article describes the definitions and functions of metadata, a variety of metadata creators and sources, the different formats of metadata, the level of structure and fullness of metadata, and finally the responses and reactions from people in library field.[Article content in Chinese

  5. Using Metadata to Build Geographic Information Sharing Environment on Internet

    Directory of Open Access Journals (Sweden)

    Chih-hong Sun

    1999-12-01

    Full Text Available Internet provides a convenient environment to share geographic information. Web GIS (Geographic Information System even provides users a direct access environment to geographic databases through Internet. However, the complexity of geographic data makes it difficult for users to understand the real content and the limitation of geographic information. In some cases, users may misuse the geographic data and make wrong decisions. Meanwhile, geographic data are distributed across various government agencies, academic institutes, and private organizations, which make it even more difficult for users to fully understand the content of these complex data. To overcome these difficulties, this research uses metadata as a guiding mechanism for users to fully understand the content and the limitation of geographic data. We introduce three metadata standards commonly used for geographic data and metadata authoring tools available in the US. We also review the current development of geographic metadata standard in Taiwan. Two metadata authoring tools are developed in this research, which will enable users to build their own geographic metadata easily.[Article content in Chinese

  6. Evolving Metadata in NASA Earth Science Data Systems

    Science.gov (United States)

    Mitchell, A.; Cechini, M. F.; Walter, J.

    2011-12-01

    NASA's Earth Observing System (EOS) is a coordinated series of satellites for long term global observations. NASA's Earth Observing System Data and Information System (EOSDIS) is a petabyte-scale archive of environmental data that supports global climate change research by providing end-to-end services from EOS instrument data collection to science data processing to full access to EOS and other earth science data. On a daily basis, the EOSDIS ingests, processes, archives and distributes over 3 terabytes of data from NASA's Earth Science missions representing over 3500 data products ranging from various types of science disciplines. EOSDIS is currently comprised of 12 discipline specific data centers that are collocated with centers of science discipline expertise. Metadata is used in all aspects of NASA's Earth Science data lifecycle from the initial measurement gathering to the accessing of data products. Missions use metadata in their science data products when describing information such as the instrument/sensor, operational plan, and geographically region. Acting as the curator of the data products, data centers employ metadata for preservation, access and manipulation of data. EOSDIS provides a centralized metadata repository called the Earth Observing System (EOS) ClearingHouse (ECHO) for data discovery and access via a service-oriented-architecture (SOA) between data centers and science data users. ECHO receives inventory metadata from data centers who generate metadata files that complies with the ECHO Metadata Model. NASA's Earth Science Data and Information System (ESDIS) Project established a Tiger Team to study and make recommendations regarding the adoption of the international metadata standard ISO 19115 in EOSDIS. The result was a technical report recommending an evolution of NASA data systems towards a consistent application of ISO 19115 and related standards including the creation of a NASA-specific convention for core ISO 19115 elements. Part of

  7. Better Living Through Metadata: Examining Archive Usage

    Science.gov (United States)

    Becker, G.; Winkelman, S.; Rots, A.

    2013-10-01

    The primary purpose of an observatory's archive is to provide access to the data through various interfaces. User interactions with the archive are recorded in server logs, which can be used to answer basic questions like: Who has downloaded dataset X? When did she do this? Which tools did she use? The answers to questions like these fill in patterns of data access (e.g., how many times dataset X has been downloaded in the past three years). Analysis of server logs provides metrics of archive usage and provides feedback on interface use which can be used to guide future interface development. The Chandra X-ray Observatory is fortunate in that a database to track data access and downloads has been continuously recording such transactions for years; however, it is overdue for an update. We will detail changes we hope to effect and the differences the changes may make to our usage metadata picture. We plan to gather more information about the geographic location of users without compromising privacy; create improved archive statistics; and track and assess the impact of web “crawlers” and other scripted access methods on the archive. With the improvements to our download tracking we hope to gain a better understanding of the dissemination of Chandra's data; how effectively it is being done; and perhaps discover ideas for new services.

  8. Educational Rationale Metadata for Learning Objects

    Directory of Open Access Journals (Sweden)

    Tom Carey

    2002-10-01

    Full Text Available Instructors searching for learning objects in online repositories will be guided in their choices by the content of the object, the characteristics of the learners addressed, and the learning process embodied in the object. We report here on a feasibility study for metadata to record process-oriented information about instructional approaches for learning objects, though a set of Educational Rationale [ER] tags which would allow authors to describe the critical elements in their design intent. The prototype ER tags describe activities which have been demonstrated to be of value in learning, and authors select the activities whose support was critical in their design decisions. The prototype ER tag set consists descriptors of the instructional approach used in the design, plus optional sub-elements for Comments, Importance and Features which implement the design intent. The tag set was tested by creators of four learning object modules, three intended for post-secondary learners and one for K-12 students and their families. In each case the creators reported that the ER tag set allowed them to express succinctly the key instructional approaches embedded in their designs. These results confirmed the overall feasibility of the ER tag approach as a means of capturing design intent from creators of learning objects. Much work remains to be done before a usable ER tag set could be specified, including evaluating the impact of ER tags during design to improve instructional quality of learning objects.

  9. Automated metadata-final project report

    Energy Technology Data Exchange (ETDEWEB)

    Schissel, David [General Atomics, San Diego, CA (United States)

    2016-04-01

    This report summarizes the work of the Automated Metadata, Provenance Cataloging, and Navigable Interfaces: Ensuring the Usefulness of Extreme-Scale Data Project (MPO Project) funded by the United States Department of Energy (DOE), Offices of Advanced Scientific Computing Research and Fusion Energy Sciences. Initially funded for three years starting in 2012, it was extended for 6 months with additional funding. The project was a collaboration between scientists at General Atomics, Lawrence Berkley National Laboratory (LBNL), and Massachusetts Institute of Technology (MIT). The group leveraged existing computer science technology where possible and extended or created new capabilities where required. The MPO project was able to successfully create a suite of software tools that can be used by a scientific community to automatically document their scientific workflows. These tools were integrated into workflows for fusion energy and climate research illustrating the general applicability of the project’s toolkit. Feedback was very positive on the project’s toolkit and the value of such automatic workflow documentation to the scientific endeavor.

  10. Automated metadata--final project report

    Energy Technology Data Exchange (ETDEWEB)

    Schissel, David [General Atomics, San Diego, CA (United States)

    2016-04-01

    This report summarizes the work of the Automated Metadata, Provenance Cataloging, and Navigable Interfaces: Ensuring the Usefulness of Extreme-Scale Data Project (MPO Project) funded by the United States Department of Energy (DOE), Offices of Advanced Scientific Computing Research and Fusion Energy Sciences. Initially funded for three years starting in 2012, it was extended for 6 months with additional funding. The project was a collaboration between scientists at General Atomics, Lawrence Berkley National Laboratory (LBNL), and Massachusetts Institute of Technology (MIT). The group leveraged existing computer science technology where possible, and extended or created new capabilities where required. The MPO project was able to successfully create a suite of software tools that can be used by a scientific community to automatically document their scientific workflows. These tools were integrated into workflows for fusion energy and climate research illustrating the general applicability of the project’s toolkit. Feedback was very positive on the project’s toolkit and the value of such automatic workflow documentation to the scientific endeavor.

  11. Transcriptome Analyses Reveal Candidate Genes Potentially Involved in Al Stress Response in Alfalfa

    Science.gov (United States)

    Liu, Wenxian; Xiong, Conghui; Yan, Longfeng; Zhang, Zhengshe; Ma, Lichao; Wang, Yanrong; Liu, Yajie; Liu, Zhipeng

    2017-01-01

    Alfalfa is the most extensively cultivated forage legume, yet most alfalfa cultivars are not aluminum tolerant, and the molecular mechanisms underlying alfalfa responses to Al stress are largely unknown. In this study, we aimed to understand how alfalfa responds to Al stress by identifying and analyzing Al-stress-responsive genes in alfalfa roots at the whole-genome scale. The transcriptome changes in alfalfa roots under Al stress for 4, 8, or 24 h were analyzed using Illumina high-throughput sequencing platforms. A total of 2464 differentially expressed genes (DEGs) were identified, and most were up-regulated at early (4 h) and/or late (24 h) Al exposure time points rather than at the middle exposure time point (8 h). Metabolic pathway enrichment analysis demonstrated that the DEGs involved in ribosome, protein biosynthesis, and process, the citrate cycle, membrane transport, and hormonal regulation were preferentially enriched and regulated. Biosynthesis inhibition and signal transduction downstream of auxin- and ethylene-mediated signals occur during alfalfa responses to root growth inhibition. The internal Al detoxification mechanisms play important roles in alfalfa roots under Al stress. These findings provide valuable information for identifying and characterizing important components in the Al signaling network in alfalfa and enhance understanding of the molecular mechanisms underlying alfalfa responses to Al stress. PMID:28217130

  12. Linking ESMF Applications With Data Portals Using Standard Metadata

    Science.gov (United States)

    Dunlap, R.; Chastang, J.; Cinquini, L.; Deluca, C.; Middleton, D.; Murphy, S.; O'Kuinghttons, R.

    2008-12-01

    This talk describes the development of a prototype data portal to support a NCAR Advanced Study Program colloquium entitled Numerical Techniques for Global Atmospheric Models, held in Boulder during July, 2008. The colloquium focused on the comparison of thirteen atmospheric dynamical cores, a key element of next- generation models. Dynamical cores solve the governing equations that describe the properties of the atmosphere over time, including its motion. An efficient, accurate dynamical core is needed to achieve the high spatial resolutions that can improve model fidelity and enable the model to span predictive scales. In support of this event, ESMF, the Earth System Curator project, and the Earth System Grid (ESG) collaborated on the creation of a prototype portal that relies on standardized metadata to directly link datasets generated at the colloquium with information about the model components that generated them. The system offers tools such as dynamically generated comparison tables, faceted search, and trackback pages that link datasets to model configurations. During the colloquium, the metadata describing the dynamical cores was provided by the participants and manually added to the portal. Since then two developments have occurred to facilitate two important steps in the metadata lifecycle: creation of the metadata and ingestion into data archives. First, ESMF has been modified to enable users to output metadata in XML format. Because ESMF data structures already contain information about grids, fields, timestepping, and components, it is natural for ESMF to write out internal information in a standardized way for use by external systems. Second, modifications to the prototype portal were completed this summer to enable XML files output by ESMF to be ingested automatically into the portal. Taken together with the prototype web portal, the new metadata-writing capabilities of ESMF form part of an emerging infrastructure in support of the full modeling

  13. Dr. Hadoop: an infinite scalable metadata management for Hadoop How the baby elephant becomes immortal

    Institute of Scientific and Technical Information of China (English)

    Dipayan DEV; Ripon PATGIRI

    2016-01-01

    In this Exa byte scale era, data increases at an exponential rate. This is in turn generating a massive amount of metadata in the file system. Hadoop is the most widely used framework to deal with big data. Due to this growth of huge amount of metadata, however, the efficiency of Hadoop is questioned numerous times by many researchers. Therefore, it is essential to create an efficient and scalable metadata management for Hadoop. Hash-based mapping and subtree partitioning are suitable in distributed metadata management schemes. Subtrce partitioning does not uniformly distribute workload among the metadata servers, and metadata needs to be migrated to keep the load roughly balanced. Hash-based mapping suffers from a constraint on the locality of metadata, though it uniformly distributes the load among NameNodes, which are the metadata servers of Hadoop. In this paper, we present a circular metadata management mechanism named dynamic circular metadata splitting (DCMS). DCMS preserves metadata locality using consistent hashing and locality-preserving hashing, keeps replicated metadata for excellent reliability, and dynamically distributes metadata among the NameNodes to keep load balancing. NameNode is a centralized heart of the Hadoop. Keeping the directory tree of all files, failure of which causes the single point of failure (SPOF). DCMS removes Hadoop's SPOF and provides an efficient and scalable metadata management. The new framework is named 'Dr. Hadoop' after the name of the authors.

  14. Identification of Alfalfa Leaf Diseases Using Image Recognition Technology

    Science.gov (United States)

    Qin, Feng; Liu, Dongxia; Sun, Bingda; Ruan, Liu; Ma, Zhanhong; Wang, Haiguang

    2016-01-01

    Common leaf spot (caused by Pseudopeziza medicaginis), rust (caused by Uromyces striatus), Leptosphaerulina leaf spot (caused by Leptosphaerulina briosiana) and Cercospora leaf spot (caused by Cercospora medicaginis) are the four common types of alfalfa leaf diseases. Timely and accurate diagnoses of these diseases are critical for disease management, alfalfa quality control and the healthy development of the alfalfa industry. In this study, the identification and diagnosis of the four types of alfalfa leaf diseases were investigated using pattern recognition algorithms based on image-processing technology. A sub-image with one or multiple typical lesions was obtained by artificial cutting from each acquired digital disease image. Then the sub-images were segmented using twelve lesion segmentation methods integrated with clustering algorithms (including K_means clustering, fuzzy C-means clustering and K_median clustering) and supervised classification algorithms (including logistic regression analysis, Naive Bayes algorithm, classification and regression tree, and linear discriminant analysis). After a comprehensive comparison, the segmentation method integrating the K_median clustering algorithm and linear discriminant analysis was chosen to obtain lesion images. After the lesion segmentation using this method, a total of 129 texture, color and shape features were extracted from the lesion images. Based on the features selected using three methods (ReliefF, 1R and correlation-based feature selection), disease recognition models were built using three supervised learning methods, including the random forest, support vector machine (SVM) and K-nearest neighbor methods. A comparison of the recognition results of the models was conducted. The results showed that when the ReliefF method was used for feature selection, the SVM model built with the most important 45 features (selected from a total of 129 features) was the optimal model. For this SVM model, the

  15. Revisiting the Economic Injury Level and Economic Threshold Model for Potato Leafhopper (Hemiptera: Cicadellidae) in Alfalfa.

    Science.gov (United States)

    Chasen, Elissa M; Undersander, Dan J; Cullen, Eileen M

    2015-08-01

    The economic injury level for potato leafhopper, Empoasca fabae (Harris), in alfalfa (Medicago sativa L.) was developed over 30 yr ago. In response to increasing market value of alfalfa, farmers and consultants are interested in reducing the economic threshold for potato leafhopper in alfalfa. To address this question, caged field trials were established on two consecutive potato leafhopper susceptible crops in 2013. Field cages were infested with a range of potato leafhopper densities to create a linear regression of alfalfa yield response. The slopes, or yield loss per insect, for the linear regressions of both trials were used to calculate an economic injury level for a range of current alfalfa market values and control costs. This yield-loss relationship is the first quantification that could be used to help assess whether the economic threshold should be lowered, given the increased market value of alfalfa.

  16. Growth With of Alfalfa Mutant in Different Nitrogen Fertilizer and Defoliation Intensity

    Directory of Open Access Journals (Sweden)

    Widyati Slamet

    2012-10-01

    Full Text Available The research was conducted to evaluate growth  of alfalfa mutan (plant height increment, number of leaves and dry matter production in different  Nitrogen Fertilizer and defoliation intensity. The design used was randomized block design 4x2 factorial with 3 replications. The first was dosage of Nitrogen fertilizerNitrogen   (0, 30, 60 and 90 kg N / ha,  the second factor was defoliation intensity (5 and 10 cm. Variables observed alfalfa growth (plant height increment, number of leaves, the production of dry matter (DM forage. The results showed that different N fertilization did not affect the growth of alfalfa mutants. Defoliation intensity  affectedmnumber of leaves and   DM  production of alfalfa mutant. Fertilization to 90 kg N / ha has not affected the growth and   defoliation  intensity 10 cm gave better growth on alfalfa mutant.   [Keywords: alfalfa mutant; Nitrogen fertilizer; defoliation; growth

  17. Using XML to encode TMA DES metadata

    Directory of Open Access Journals (Sweden)

    Oliver Lyttleton

    2011-01-01

    Full Text Available Background: The Tissue Microarray Data Exchange Specification (TMA DES is an XML specification for encoding TMA experiment data. While TMA DES data is encoded in XML, the files that describe its syntax, structure, and semantics are not. The DTD format is used to describe the syntax and structure of TMA DES, and the ISO 11179 format is used to define the semantics of TMA DES. However, XML Schema can be used in place of DTDs, and another XML encoded format, RDF, can be used in place of ISO 11179. Encoding all TMA DES data and metadata in XML would simplify the development and usage of programs which validate and parse TMA DES data. XML Schema has advantages over DTDs such as support for data types, and a more powerful means of specifying constraints on data values. An advantage of RDF encoded in XML over ISO 11179 is that XML defines rules for encoding data, whereas ISO 11179 does not. Materials and Methods: We created an XML Schema version of the TMA DES DTD. We wrote a program that converted ISO 11179 definitions to RDF encoded in XML, and used it to convert the TMA DES ISO 11179 definitions to RDF. Results: We validated a sample TMA DES XML file that was supplied with the publication that originally specified TMA DES using our XML Schema. We successfully validated the RDF produced by our ISO 11179 converter with the W3C RDF validation service. Conclusions: All TMA DES data could be encoded using XML, which simplifies its processing. XML Schema allows datatypes and valid value ranges to be specified for CDEs, which enables a wider range of error checking to be performed using XML Schemas than could be performed using DTDs.

  18. Plant regeneration from proroplasts of alfalfa (Medicago sativa) via somatic embryogenesis

    OpenAIRE

    Monteiro, Mariza; Appezzato-da-Glória, Beatriz; Valarini,Maria José; Oliveira, Carlos Alberto; Vieira, Maria Lucia Carneiro

    2003-01-01

    Alfalfa is one of the most frequently studied species from the production of tissue culture-derived embryos point of view. In this study, five alfalfa cultivars were analyzed with reference to their ability to regenerate plants from protoplast cultures via somatic embryogenesis. Plant regeneration from leaf-derived protoplasts isolated from the cultivar Rangelander was achieved using a protocol defined for alfalfa cell suspension-derived embryogenesis. Because of its high efficiency, this pro...

  19. Transcriptome Analysis of Resistant and Susceptible Alfalfa Cultivars Infected With Root-Knot Nematode Meloidogyne incognita

    OpenAIRE

    Postnikova, Olga A.; Maria Hult; Jonathan Shao; Andrea Skantar; Nemchinov, Lev G.

    2015-01-01

    Nematodes are one of the major limiting factors in alfalfa production. Root-knot nematodes (RKN, Meloidogyne spp.) are widely distributed and economically important sedentary endoparasites of agricultural crops and they may inflict significant damage to alfalfa fields. As of today, no studies have been published on global gene expression profiling in alfalfa infected with RKN or any other plant parasitic nematode. Very little information is available about molecular mechanisms that contribute...

  20. Animal feed compositions containing phytase derived from transgenic alfalfa and methods of use thereof

    Science.gov (United States)

    Austin-Phillips, Sandra; Koegel, Richard G.; Straub, Richard J.; Cook, Mark

    1999-01-01

    A value-added composition of matter containing plant matter from transgenic alfalfa which expresses exogenous phytase activity is disclosed. The phytase activity is a gene product of an exogenous gene encoding for phytase which has been stably incorporated into the genome of alfalfa plants. The transgenic alfalfa expresses phytase activity in nutritionally-significant amounts, thereby enabling its use in animal feeds to eliminate the need for phosphorous supplementation of livestock, poultry, and fish feed rations.

  1. Animal feed compositions containing phytase derived from transgenic alfalfa and methods of use thereof

    Energy Technology Data Exchange (ETDEWEB)

    Austin-Phillips, Sandra (Madison, WI); Koegel, Richard G. (Madison, WI); Straub, Richard J. (Brooklyn, WI); Cook, Mark (Madison, WI)

    2001-01-01

    A value-added composition of matter containing plant matter from transgenic alfalfa which expresses exogenous phytase activity is disclosed. The phytase activity is a gene product of an exogenous gene encoding for phytase which has been stably incorporated into the genome of alfalfa plants. The transgenic alfalfa expresses phytase activity in nutritionally-significant amounts, thereby enabling its use in animal feeds to eliminate the need for phosphorous supplementation of livestock, poultry, and fish feed rations.

  2. Semantic Representation of Temporal Metadata in a Virtual Observatory

    Science.gov (United States)

    Wang, H.; Rozell, E. A.; West, P.; Zednik, S.; Fox, P. A.

    2011-12-01

    The Virtual Solar-Terrestrial Observatory (VSTO) Portal at vsto.org provides a set of guided workflows to implement use cases designed solar-terrestrial physics and upper atmospheric science. Semantics are used in VSTO to model abstract instrument and parameter classifications, providing data access to users without extended domain specific vocabularies. The temporal restrictions used in the workflows are currently possible via RESTful services made to a remote system with access to a SQL-based metadata catalog. In order to provide a greater range of temporal reasoning and search capabilities for the user, we propose an alternative architecture design for the VSTO Portal, where the temporal metadata is integrated in the domain ontology. We achieve this integration by converting temporal metadata from the headers of raw data files into RDF using the OWL-Time vocabulary. This presentation covers our work with semantic temporal metadata, including: our representation using OWL-Time, issues that we have faced in persistent storage, and performance and scalability of semantic query. We conclude with discussions of the significance semantic temporal metadata has in virtual observatories.

  3. Interoperable Solar Data and Metadata via LISIRD 3

    Science.gov (United States)

    Wilson, A.; Lindholm, D. M.; Pankratz, C. K.; Snow, M. A.; Woods, T. N.

    2015-12-01

    LISIRD 3 is a major upgrade of the LASP Interactive Solar Irradiance Data Center (LISIRD), which serves several dozen space based solar irradiance and related data products to the public. Through interactive plots, LISIRD 3 provides data browsing supported by data subsetting and aggregation. Incorporating a semantically enabled metadata repository, LISIRD 3 users see current, vetted, consistent information about the datasets offered. Users can now also search for datasets based on metadata fields such as dataset type and/or spectral or temporal range. This semantic database enables metadata browsing, so users can discover the relationships between datasets, instruments, spacecraft, mission and PI. The database also enables creation and publication of metadata records in a variety of formats, such as SPASE or ISO, making these datasets more discoverable. The database also enables the possibility of a public SPARQL endpoint, making the metadata browsable in an automated fashion. LISIRD 3's data access middleware, LaTiS, provides dynamic, on demand reformatting of data and timestamps, subsetting and aggregation, and other server side functionality via a RESTful OPeNDAP compliant API, enabling interoperability between LASP datasets and many common tools. LISIRD 3's templated front end design, coupled with the uniform data interface offered by LaTiS, allows easy integration of new datasets. Consequently the number and variety of datasets offered by LISIRD has grown to encompass several dozen, with many more to come. This poster will discuss design and implementation of LISIRD 3, including tools used, capabilities enabled, and issues encountered.

  4. Effects of alfalfa meal on growth performance and gastrointestinal tract development of growing ducks.

    Science.gov (United States)

    Jiang, J F; Song, X M; Huang, X; Zhou, W D; Wu, J L; Zhu, Z G; Zheng, H C; Jiang, Y Q

    2012-10-01

    A study was conducted to evaluate effects of alfalfa meal on growth performance and gastrointestinal tract development of growing layer ducks to provide evidence for application of alfalfa meal in the duck industry. Two hundred and fifty-six healthy Shaoxing 7-wk old growing layer ducks were selected and randomly allocated to 1 of 4 dietary treatments based on corn and soybean meal and containing 0, 3, 6, and 9% of alfalfa meal for 8 wks. Each treatment consisted of 4 replicates of 16 ducks each. Briefly, birds were raised in separate compartments, and each compartment consisted of three parts: indoor floor house, adjacent open area and a connecting water area. The results showed: i) Growing ducks fed alfalfa meal diet were not significantly different in average daily gain, feed intake and gain-to-feed ratio from those fed no alfalfa diet (p>0.05). ii) Alfalfa meal increased the ratio crop, gizzard to live weight, caecum to live weight, the caecum index of growing ducks (pducks increased significantly with the increase of alfalfa meal levels (pducks decreased significantly with the increase of alfalfa meal levels (pducks could improve gastrointestinal tract growth and small intestinal morphology without effect on performance. This experiment provides evidence that alfalfa meal is a very valuable feedstuff for growing layer ducks.

  5. Bioinformatics Analysis of Zinc Transporter from Baoding Alfalfa

    Institute of Scientific and Technical Information of China (English)

    Haibo WANG; Junyun GUO

    2012-01-01

    [Objective] This study aimed to perform the bioinformatics analysis of Zinc transporter (ZnT) from Baoding Alfalfa. [Method] Based on the amino acid sequence, the physical and chemical properties, hydrophilicity/hydrophobicity, secondary structure of ZnT from Baoding alfalfa were predicted by a series of bioinformatics software. And the transmembrane domains were predicted by using different online tools. [Result] ZnT is a hydrophobic protein containing 408 amino acids with the theoretical pl of 5.94, and it has 7 potential transmembrane hydrophobic regions. In the sec- ondary structure, co-helix (Hh) accounted for 48.04%, extended strand (Ee) for 9.56%, random coil (Cc) for 42.40%, which was accored with the characteristic of transmembrane protein. [Conclusion] mZnT is a member of CDF family, responsible for transporting Zn^2+ out of the cell membrane to reduce the concentration and toxicity of Zn^2+.

  6. Proteomics analysis of alfalfa response to heat stress.

    Directory of Open Access Journals (Sweden)

    Weimin Li

    Full Text Available The proteome responses to heat stress have not been well understood. In this study, alfalfa (Medicago sativa L. cv. Huaiyin seedlings were exposed to 25 °C (control and 40 °C (heat stress in growth chambers, and leaves were collected at 24, 48 and 72 h after treatment, respectively. The morphological, physiological and proteomic processes were negatively affected under heat stress. Proteins were extracted and separated by two-dimensional polyacrylamide gel electrophoresis (2-DE, and differentially expressed protein spots were identified by mass spectrometry (MS. Totally, 81 differentially expressed proteins were identified successfully by MALDI-TOF/TOF. These proteins were categorized into nine classes: including metabolism, energy, protein synthesis, protein destination/storage, transporters, intracellular traffic, cell structure, signal transduction and disease/defence. Five proteins were further analyzed for mRNA levels. The results of the proteomics analyses provide a better understanding of the molecular basis of heat-stress responses in alfalfa.

  7. Developing PYTHON Codes for the Undergraduate ALFALFA Team

    Science.gov (United States)

    Troischt, Parker; Ryan, Nicholas; Alfalfa Team

    2016-03-01

    We describe here progress toward developing a number of new PYTHON routines to be used by members of the Undergraduate ALFALFA Team. The codes are designed to analyze HI spectra and assist in identifying and categorizing some of the intriguing sources found in the initial blind ALFALFA survey. Numerical integration is performed on extragalactic sources using 21cm line spectra produced with the L-Band Wide receiver at the National Astronomy and Ionosphere Center. Prior to the integration, polynomial fits are employed to obtain an appropriate baseline for each source. The codes developed here are part of a larger team effort to use new PYTHON routines in order to replace, upgrade, or supplement a wealth of existing IDL codes within the collaboration. This work has been supported by NSF Grant AST-1211005.

  8. Metadata for fine-grained processing at ATLAS

    CERN Document Server

    Cranshaw, Jack; The ATLAS collaboration

    2016-01-01

    High energy physics experiments are implementing highly parallel solutions for event processing on resources that support concurrency at multiple levels. These range from the inherent large-scale parallelism of HPC resources to the multiprocessing and multithreading needed for effective use of multi-core and GPU-augmented nodes. Such modes of processing, and the efficient opportunistic use of transiently-available resources, lead to finer-grained processing of event data. Previously metadata systems were tailored to jobs that were atomic and processed large, well-defined units of data. The new environment requires a more fine-grained approach to metadata handling, especially with regard to bookkeeping. For opportunistic resources metadata propagation needs to work even if individual jobs are not finalized. This contribution describes ATLAS solutions to this problem in the context of the multiprocessing framework currently in use for LHC Run 2, development underway for the ATLAS multithreaded framework (Athena...

  9. A Generic Metadata Editor Supporting System Using Drupal CMS

    Science.gov (United States)

    Pan, J.; Banks, N. G.; Leggott, M.

    2011-12-01

    Metadata handling is a key factor in preserving and reusing scientific data. In recent years, standardized structural metadata has become widely used in Geoscience communities. However, there exist many different standards in Geosciences, such as the current version of the Federal Geographic Data Committee's Content Standard for Digital Geospatial Metadata (FGDC CSDGM), the Ecological Markup Language (EML), the Geography Markup Language (GML), and the emerging ISO 19115 and related standards. In addition, there are many different subsets within the Geoscience subdomain such as the Biological Profile of the FGDC (CSDGM), or for geopolitical regions, such as the European Profile or the North American Profile in the ISO standards. It is therefore desirable to have a software foundation to support metadata creation and editing for multiple standards and profiles, without re-inventing the wheels. We have developed a software module as a generic, flexible software system to do just that: to facilitate the support for multiple metadata standards and profiles. The software consists of a set of modules for the Drupal Content Management System (CMS), with minimal inter-dependencies to other Drupal modules. There are two steps in using the system's metadata functions. First, an administrator can use the system to design a user form, based on an XML schema and its instances. The form definition is named and stored in the Drupal database as a XML blob content. Second, users in an editor role can then use the persisted XML definition to render an actual metadata entry form, for creating or editing a metadata record. Behind the scenes, the form definition XML is transformed into a PHP array, which is then rendered via Drupal Form API. When the form is submitted the posted values are used to modify a metadata record. Drupal hooks can be used to perform custom processing on metadata record before and after submission. It is trivial to store the metadata record as an actual XML file

  10. Research on metadata in manufacturing-oriented EAI

    Institute of Scientific and Technical Information of China (English)

    Wang Rui; Li Congxin

    2007-01-01

    Enterprise application integration (EAI) focuses on the collaboration and interconnection of various information systems, so the basic problem to be solved is how EAI guarantees that the applications will produce consistent presentation of data, message and transaction.The metadata methodology may give us certain good ideas.First, the metadata description method of manufacturing information resource, transaction process and message delivery is put forward on the basis of operation analysis of manufacturing-oriented EAI, and then the tree-structured XML schema of corresponding object is built and a framework of metadata application in the discrete Manufacturing-Oriented EAI is established.Finally, a practical enterprise information integration system in Shanghai Tobacco Machine Co., Ltd.is presented as an example to show how it functions.

  11. Meta-Data Objects as the Basis for System Evolution

    CERN Document Server

    Estrella, Florida; Tóth, N; Kovács, Z; Le Goff, J M; Clatchey, Richard Mc; Toth, Norbert; Kovacs, Zsolt; Goff, Jean-Marie Le

    2001-01-01

    One of the main factors driving object-oriented software development in the Web- age is the need for systems to evolve as user requirements change. A crucial factor in the creation of adaptable systems dealing with changing requirements is the suitability of the underlying technology in allowing the evolution of the system. A reflective system utilizes an open architecture where implicit system aspects are reified to become explicit first-class (meta-data) objects. These implicit system aspects are often fundamental structures which are inaccessible and immutable, and their reification as meta-data objects can serve as the basis for changes and extensions to the system, making it self- describing. To address the evolvability issue, this paper proposes a reflective architecture based on two orthogonal abstractions - model abstraction and information abstraction. In this architecture the modeling abstractions allow for the separation of the description meta-data from the system aspects they represent so that th...

  12. Identifying OH Imposters in the ALFALFA Neutral Hydrogen Survey

    CERN Document Server

    Suess, Katherine A; Haynes, Martha P; Giovanelli, Riccardo

    2016-01-01

    OH megamasers (OHMs) are rare, luminous molecular masers that are typically observed in (ultra) luminous infrared galaxies and serve as markers of major galaxy mergers. In blind emission line surveys such as the Arecibo Legacy Fast Arecibo L-Band Feed Array (ALFALFA) survey for neutral hydrogen (HI), OHMs at z~0.2 can mimic z~0.05 HI lines. We present the results of optical spectroscopy of ambiguous HI detections in the ALFALFA 40% data release detected by the Wide Field Infrared Survey Explorer (WISE) but with uncertain optical counterparts. The optical redshifts, obtained from observations at the Apache Point Observatory, revealed five new OHMs and identified 129 HI optical counterparts. Sixty candidates remain ambiguous. The new OHMs are the first detected in a blind spectral line survey. The number of OHMs in ALFALFA is consistent with predictions from the OH luminosity function. Additionally, the mid-infrared magnitudes and colors of the OHM host galaxies found in a blind survey do not seem to differ fro...

  13. Linked data for libraries, archives and museums how to clean, link and publish your metadata

    CERN Document Server

    Hooland, Seth van

    2014-01-01

    This highly practical handbook teaches you how to unlock the value of your existing metadata through cleaning, reconciliation, enrichment and linking and how to streamline the process of new metadata creation. Libraries, archives and museums are facing up to the challenge of providing access to fast growing collections whilst managing cuts to budgets. Key to this is the creation, linking and publishing of good quality metadata as Linked Data that will allow their collections to be discovered, accessed and disseminated in a sustainable manner. This highly practical handbook teaches you how to unlock the value of your existing metadata through cleaning, reconciliation, enrichment and linking and how to streamline the process of new metadata creation. Metadata experts Seth van Hooland and Ruben Verborgh introduce the key concepts of metadata standards and Linked Data and how they can be practically applied to existing metadata, giving readers the tools and understanding to achieve maximum results with limited re...

  14. Research and establishment of enterprise quality metadata standard

    Institute of Scientific and Technical Information of China (English)

    Jie LI; Genbao ZHANG; Han SONG

    2008-01-01

    Enabling quality managers to utilize and manage quality data efficiently under modern quality management circumstances is a primary issue for improving enterprise quality management. A concept of quality metadata is proposed in this paper, which can help quality managers gain a deeper understanding of various features of quality data and establish a more stable foundation for further use and management of such data. The procedure of establishing quality meta-data standards is emphasized in the paper, and the content structure and description scheme are given. Finally, a summary is made and future work is prospected.

  15. SM4AM: A Semantic Metamodel for Analytical Metadata

    DEFF Research Database (Denmark)

    Varga, Jovan; Romero, Oscar; Pedersen, Torben Bach

    2014-01-01

    Next generation BI systems emerge as platforms where traditional BI tools meet semi-structured and unstructured data coming from the Web. In these settings, the user-centric orientation represents a key characteristic for the acceptance and wide usage by numerous and diverse end users in their data....... We present SM4AM, a Semantic Metamodel for Analytical Metadata created as an RDF formalization of the Analytical Metadata artifacts needed for user assistance exploitation purposes in next generation BI systems. We consider the Linked Data initiative and its relevance for user assistance...

  16. openPDS: Protecting the Privacy of Metadata through SafeAnswers

    OpenAIRE

    2014-01-01

    The rise of smartphones and web services made possible the large-scale collection of personal metadata. Information about individuals' location, phone call logs, or web-searches, is collected and used intensively by organizations and big data researchers. Metadata has however yet to realize its full potential. Privacy and legal concerns, as well as the lack of technical solutions for personal metadata management is preventing metadata from being shared and reconciled under the control of the ...

  17. BrainBank Metadata Specification for the Human Brain Project and Neuroinformatics

    OpenAIRE

    Lianglin, Hu; Yufang, Hou; Jianhui, Li; Ling, Yin; Wenwen, Shi

    2007-01-01

    Many databases and platforms for human brain data have been established in China over the years, and metadata plays an important role in understanding and using them. The BrainBank Metadata Specification for the Human Brain Project and Neuroinformatics provides a structure for describing the context and content information of BrainBank databases and services. It includes six parts: identification, method, data schema, distribution of the database, metadata extension, and metadata reference Th...

  18. Metadata squared: enhancing its usability for volunteered geographic information and the GeoWeb

    Science.gov (United States)

    Poore, Barbara S.; Wolf, Eric B.; Sui, Daniel Z.; Elwood, Sarah; Goodchild, Michael F.

    2013-01-01

    The Internet has brought many changes to the way geographic information is created and shared. One aspect that has not changed is metadata. Static spatial data quality descriptions were standardized in the mid-1990s and cannot accommodate the current climate of data creation where nonexperts are using mobile phones and other location-based devices on a continuous basis to contribute data to Internet mapping platforms. The usability of standard geospatial metadata is being questioned by academics and neogeographers alike. This chapter analyzes current discussions of metadata to demonstrate how the media shift that is occurring has affected requirements for metadata. Two case studies of metadata use are presented—online sharing of environmental information through a regional spatial data infrastructure in the early 2000s, and new types of metadata that are being used today in OpenStreetMap, a map of the world created entirely by volunteers. Changes in metadata requirements are examined for usability, the ease with which metadata supports coproduction of data by communities of users, how metadata enhances findability, and how the relationship between metadata and data has changed. We argue that traditional metadata associated with spatial data infrastructures is inadequate and suggest several research avenues to make this type of metadata more interactive and effective in the GeoWeb.

  19. Understanding the Protocol for Metadata Harvesting of the Open Archives Initiative.

    Science.gov (United States)

    Breeding, Marshall

    2002-01-01

    Explains the Open Archives Initiative (OAI) Protocol for Metadata Harvesting and its impact on digital libraries and information retrieval by transferring metadata from one server to another in a network of information systems. Highlights include data providers; service providers; value-added services; Dublin Core metadata; data transfer;…

  20. Alfalfa interseeded into silage corn can serve as a cover crop and subsequent forage crop

    Science.gov (United States)

    Alfalfa (Medicago sativa) and corn (Zea mays) silage are commonly grown in rotation in dairy forage production systems throughout the northern regions of the USA. Alfalfa interseeded into silage corn could potentially serve two purposes: as a cover crop during the silage corn production year, and as...

  1. Selfing rate in an alfalfa seed production field pollinated with leafcutter bees

    Science.gov (United States)

    Self-pollination or “selfing” in autotetraploid alfalfa (Medicago sativa L.) (2n = 4x = 32) leads to severe inbreeding depression. Investigating selfing in alfalfa seed production may allow mitigation strategy development against potential negative impacts of selfing on varietal performance. Using m...

  2. Mechanisms of qualitative and quantitative resistance to Aphanomyces root rot in alfalfa

    Science.gov (United States)

    Aphanomyces root rot (ARR), caused by Aphanomyces euteiches, is one of the most important diseases of alfalfa (Medicago sativa) in the United States. Two races of the pathogen are currently recognized. Most modern alfalfa cultivars have high levels of resistance to race 1 but few cultivars have resi...

  3. Mapping fall dormancy and winter injury in tetraploid alfalfa (Medicago sativa L.)

    Science.gov (United States)

    Alfalfa is a widely planted perennial forage crop. Dormancy in autumn (fall dormancy) is generally negatively correlated with winter injury in alfalfa. To understand the genetic basis of the two traits, we identified quantitative trait loci (QTL) controlling autumn growth and winter injury using a...

  4. Extraction, composition, and functional properties of dried alfalfa (Medicago sativa L.) leaf protein

    Science.gov (United States)

    Alfalfa, traditionally used for animal feed, has attracted attention as a potential feedstock for biofuels and the viability of the process would be enhanced by co-products with value-added uses. This study describes extraction of protein from dried alfalfa leaves and the functional properties of th...

  5. Prohexadione-calcium improves stand density and yield of alfalfa interseeded into silage corn

    Science.gov (United States)

    Interseeded alfalfa (Medicago sativa L.) could serve as a dual-purpose crop to provide groundcover for silage corn (Zea mays L.) and forage during subsequent years of production, but interspecific competition often leads to poor stands of alfalfa and unsatisfactory yields of corn. Four experiments e...

  6. Roadside alfalfa: Innocent bystanders or conveyers of genetically-engineered traits?

    Science.gov (United States)

    Clumps of alfalfa are a common sight along roads and vacant lots in areas that grow alfalfa for hay or seed. So what role do feral roadside plants play in dispersing transgenes? Is there a risk that transgenic feral plants serve as reservoirs or conduits that might facilitate the movement of transg...

  7. Alfalfa transgene dispersal and adventitious presence: understanding grower perception of risk

    Science.gov (United States)

    Recognizing the importance of coexistence, the alfalfa industry has developed a set of Best Management Practices (BMP) to maintain separation of GE and conventional production. But the success of BMP depends upon the degree that growers comply. Therefore we surveyed 530 alfalfa hay and seed producer...

  8. Interaction of bale size and preservative rate for large-round bales of alfalfa hay

    Science.gov (United States)

    Recently, two studies conducted at the US Dairy Forage Research Center have reported inconsistent storage responses following the application of propionic-acid-based preservatives to alfalfa or alfalfa-orchardgrass hays. One of these studies utilized 5-foot-diameter round bales, and produced disappo...

  9. A mineral seed coating for control of seedling diseases of alfalfa suitable for organic production systems

    Science.gov (United States)

    Most alfalfa seed is treated with the systemic fungicide mefenoxam (Apron XL) for control of soilborne seedling diseases. However, Apron XL does not have activity against Aphanomyces euteiches, the causal agent of Aphanomyces root rot (ARR), which is an important component of the alfalfa root rot co...

  10. Effects of dairy slurry on the nutritive value and fermentation characteristics of alfalfa silages

    Science.gov (United States)

    Dairy producers frequently ask questions about the risks associated with applying dairy slurry onto growing alfalfa. Our objectives were to determine the effects of dairy-slurry application on the subsequent nutritive value and fermentation characteristics of alfalfa silages. Dairy slurry was applie...

  11. Effects of alfalfa meal on the intestinal microbial diversity and immunity of growing ducks.

    Science.gov (United States)

    Jiang, J F; Song, X M; Wu, J L; Jiang, Y Q

    2014-12-01

    This study was conducted to investigate the effects of alfalfa meal diets on the intestinal microbial diversity and immunity of growing egg-type ducks. A total of 128 healthy 7-week-old female egg-type Shaoxing ducks were selected and randomly assigned into four dietary treatments: 0%, 3%, 6% and 9% alfalfa meal for 8 weeks. Each treatment consisted of four replicates of eight ducks each. Polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE) was used to characterize the microbiota. The results showed that the DGGE fingerprints of the V6-V8 fragments of the 16S rRNA from the caeca and faeces of ducks fed 3%, 6% and 9% alfalfa meal had significantly higher microbiota species richness than those fed 0% alfalfa meal (p ducks fed 3%, 6% and 9% alfalfa meal was significantly higher than those fed 0% alfalfa meal (p 0.05), and the 3-9% alfalfa meal did not affect the growth performance of the growing egg-type ducks. The proliferation of T and B lymphocytes was significantly greater (p ducks. Dietary alfalfa meal supplementation increases intestinal microbial community diversity and improves of the immune response growing egg-type ducks.

  12. The Productivity and Quality of Alfalfa (Medicago sativa L. in Romanian Forest Steppe

    Directory of Open Access Journals (Sweden)

    Mihai STAVARACHE

    2015-04-01

    Full Text Available Alternative use of alfalfa, for various purposes, including the production of biofuels or food supplement for human alimentation, is a study topic still in its early stages of research. Studying and understanding the biology of alfalfa and the factors with a major influence on it are very important activities. The productivity and quality of alfalfa are two indicators that help determine, in addition to economic value, the way in which alfalfa can be used. Evolution of alfalfa yield and quality depends on many factors, such as the growth stage of alfalfa plants at harvesting. It was observed over three years of vegetation the influence of alfalfa plant growth stage at harvest on plant height, leaves/stems ratio, production of leaves, stems and whole plant (DM - dry matter per hectare and on quality indicators (CP - crude protein, NDF - neutral detergent fiber and ADF - acid detergent fiber. The results showed that, with the advancement of phenological phases, from early bud stage to complete flowering, the total biomass output raised from 2.79 Mg·ha-1 to 4.60 Mg·ha-1, the neutral detergent fiber raised from 48.4-50.6% to 62.0-67.7%, while crude protein content decreased from 21.2-24.0% to 13.3-16.5%. The parameter values were correlated with alfalfa growth stage during the harvesting (significant at the 0.05 and 0.01 probability levels.

  13. Economics of growth regulator treatment of alfalfa seed for interseeding into silage corn

    Science.gov (United States)

    Previous studies have focused on interseeding of alfalfa into corn for use as a temporary cover crop rather than as a means of jump-starting alfalfa production after corn. In ongoing field studies, we are evaluating whether plant growth regulators (PGR) may be used to aid the establishment of inters...

  14. Big Earth Data Initiative: Metadata Improvement: Case Studies

    Science.gov (United States)

    Kozimor, John; Habermann, Ted; Farley, John

    2016-01-01

    Big Earth Data Initiative (BEDI) The Big Earth Data Initiative (BEDI) invests in standardizing and optimizing the collection, management and delivery of U.S. Government's civil Earth observation data to improve discovery, access use, and understanding of Earth observations by the broader user community. Complete and consistent standard metadata helps address all three goals.

  15. Automatic Extraction of Metadata from Scientific Publications for CRIS Systems

    Science.gov (United States)

    Kovacevic, Aleksandar; Ivanovic, Dragan; Milosavljevic, Branko; Konjovic, Zora; Surla, Dusan

    2011-01-01

    Purpose: The aim of this paper is to develop a system for automatic extraction of metadata from scientific papers in PDF format for the information system for monitoring the scientific research activity of the University of Novi Sad (CRIS UNS). Design/methodology/approach: The system is based on machine learning and performs automatic extraction…

  16. Training and Best Practice Guidelines: Implications for Metadata Creation

    Science.gov (United States)

    Chuttur, Mohammad Y.

    2012-01-01

    In response to the rapid development of digital libraries over the past decade, researchers have focused on the use of metadata as an effective means to support resource discovery within online repositories. With the increasing involvement of libraries in digitization projects and the growing number of institutional repositories, it is anticipated…

  17. Genomic standards consortium workshop: metagenomics, metadata and metaanalysis (M3).

    Science.gov (United States)

    Sterk, Peter; Hirschman, Lynette; Field, Dawn; Wooley, John

    2010-01-01

    The M3 workshop has, as its primary focus, the rapidly growing area of metagenomics, including the metadata standards and the meta-analysis approaches needed to organize, process and interpret metagenomics data. The PSB Workshop builds on the first M3 meeting, a Special Interest Group (SIG) meeting at ISMB 2009, organized by the Genomics Standards Consortium.

  18. Web Video Mining: Metadata Predictive Analysis using Classification Techniques

    Directory of Open Access Journals (Sweden)

    Siddu P. Algur

    2016-02-01

    Full Text Available Now a days, the Data Engineering becoming emerging trend to discover knowledge from web audiovisual data such as- YouTube videos, Yahoo Screen, Face Book videos etc. Different categories of web video are being shared on such social websites and are being used by the billions of users all over the world. The uploaded web videos will have different kind of metadata as attribute information of the video data. The metadata attributes defines the contents and features/characteristics of the web videos conceptually. Hence, accomplishing web video mining by extracting features of web videos in terms of metadata is a challenging task. In this work, effective attempts are made to classify and predict the metadata features of web videos such as length of the web videos, number of comments of the web videos, ratings information and view counts of the web videos using data mining algorithms such as Decision tree J48 and navie Bayesian algorithms as a part of web video mining. The results of Decision tree J48 and navie Bayesian classification models are analyzed and compared as a step in the process of knowledge discovery from web videos.

  19. Competence Based Educational Metadata for Supporting Lifelong Competence Development Programmes

    NARCIS (Netherlands)

    Sampson, Demetrios; Fytros, Demetrios

    2008-01-01

    Sampson, D., & Fytros, D. (2008). Competence Based Educational Metadata for Supporting Lifelong Competence Development Programmes. In P. Diaz, Kinshuk, I. Aedo & E. Mora (Eds.), Proceedings of the 8th IEEE International Conference on Advanced Learning Technologies (ICALT 2008), pp. 288-292. July, 1-

  20. Metadata Schema Used in OCLC Sampled Web Pages

    Directory of Open Access Journals (Sweden)

    Fei Yu

    2005-12-01

    Full Text Available The tremendous growth of Web resources has made information organization and retrieval more and more difficult. As one approach to this problem, metadata schemas have been developed to characterize Web resources. However, many questions have been raised about the use of metadata schemas such as which metadata schemas have been used on the Web? How did they describe Web accessible information? What is the distribution of these metadata schemas among Web pages? Do certain schemas dominate the others? To address these issues, this study analyzed 16,383 Web pages with meta tags extracted from 200,000 OCLC sampled Web pages in 2000. It found that only 8.19% Web pages used meta tags; description tags, keyword tags, and Dublin Core tags were the only three schemas used in the Web pages. This article revealed the use of meta tags in terms of their function distribution, syntax characteristics, granularity of the Web pages, and the length distribution and word number distribution of both description and keywords tags.

  1. Discovering Physical Samples Through Identifiers, Metadata, and Brokering

    Science.gov (United States)

    Arctur, D. K.; Hills, D. J.; Jenkyns, R.

    2015-12-01

    Physical samples, particularly in the geosciences, are key to understanding the Earth system, its history, and its evolution. Our record of the Earth as captured by physical samples is difficult to explain and mine for understanding, due to incomplete, disconnected, and evolving metadata content. This is further complicated by differing ways of classifying, cataloguing, publishing, and searching the metadata, especially when specimens do not fit neatly into a single domain—for example, fossils cross disciplinary boundaries (mineral and biological). Sometimes even the fundamental classification systems evolve, such as the geological time scale, triggering daunting processes to update existing specimen databases. Increasingly, we need to consider ways of leveraging permanent, unique identifiers, as well as advancements in metadata publishing that link digital records with physical samples in a robust, adaptive way. An NSF EarthCube Research Coordination Network (RCN) called the Internet of Samples (iSamples) is now working to bridge the metadata schemas for biological and geological domains. We are leveraging the International Geo Sample Number (IGSN) that provides a versatile system of registering physical samples, and working to harmonize this with the DataCite schema for Digital Object Identifiers (DOI). A brokering approach for linking disparate catalogues and classification systems could help scale discovery and access to the many large collections now being managed (sometimes millions of specimens per collection). This presentation is about our community building efforts, research directions, and insights to date.

  2. Metadata Harvesting in Regional Digital Libraries in the PIONIER Network

    Science.gov (United States)

    Mazurek, Cezary; Stroinski, Maciej; Werla, Marcin; Weglarz, Jan

    2006-01-01

    Purpose: The paper aims to present the concept of the functionality of metadata harvesting for regional digital libraries, based on the OAI-PMH protocol. This functionality is a part of regional digital libraries platform created in Poland. The platform was required to reach one of main objectives of the Polish PIONIER Programme--to enrich the…

  3. Metadata Standards in Theory and Practice: The Human in the Loop

    Science.gov (United States)

    Yarmey, L.; Starkweather, S.

    2013-12-01

    Metadata standards are meant to enable interoperability through common, well-defined structures and are a foundation for broader cyberinfrastructure efforts. Standards are central to emerging technologies such as metadata brokering tools supporting distributed data search. However, metadata standards in practice are often poor indicators of standardized, readily interoperable metadata. The International Arctic Systems for Observing the Atmosphere (IASOA) data portal provides discovery and access tools for aggregated datasets from ten long-term international Arctic atmospheric observing stations. The Advanced Cooperative Arctic Data and Information Service (ACADIS) Arctic Data Explorer brokers metadata to provide distributed data search across Arctic repositories. Both the IASOA data portal and the Arctic Data Explorer rely on metadata and metadata standards to support value-add services. Challenges have included: translating between different standards despite existing crosswalks, diverging implementation practices of the same standard across communities, changing metadata practices over time and associated backwards compatibility, reconciling metadata created by data providers with standards, lack of community-accepted definitions for key terms (e.g. ';project'), integrating controlled vocabularies, and others. Metadata record ';validity' or compliance with a standard has been insufficient for interoperability. To overcome these challenges, both projects committed significant work to integrate and offer services over already 'standards compliant' metadata. Both efforts have shown that the 'human-in-the-loop' is still required to fulfill the lofty theoretical promises of metadata standards. In this talk, we 1) summarize the real-world experiences of two data discovery portals working with metadata in standard form, and 2) offer lessons learned for others who work with and rely on metadata and metadata standards.

  4. Serving Fisheries and Ocean Metadata to Communities Around the World

    Science.gov (United States)

    Meaux, Melanie F.

    2007-01-01

    NASA's Global Change Master Directory (GCMD) assists the oceanographic community in the discovery, access, and sharing of scientific data by serving on-line fisheries and ocean metadata to users around the globe. As of January 2006, the directory holds more than 16,300 Earth Science data descriptions and over 1,300 services descriptions. Of these, nearly 4,000 unique ocean-related metadata records are available to the public, with many having direct links to the data. In 2005, the GCMD averaged over 5 million hits a month, with nearly a half million unique hosts for the year. Through the GCMD portal (http://gcmd.nasa.gov/), users can search vast and growing quantities of data and services using controlled keywords, free-text searches, or a combination of both. Users may now refine a search based on topic, location, instrument, platform, project, data center, spatial and temporal coverage, and data resolution for selected datasets. The directory also offers data holders a means to advertise and search their data through customized portals, which are subset views of the directory. The discovery metadata standard used is the Directory Interchange Format (DIF), adopted in 1988. This format has evolved to accommodate other national and international standards such as FGDC and IS019115. Users can submit metadata through easy-to-use online and offline authoring tools. The directory, which also serves as the International Directory Network (IDN), has been providing its services and sharing its experience and knowledge of metadata at the international, national, regional, and local level for many years. Active partners include the Committee on Earth Observation Satellites (CEOS), federal agencies (such as NASA, NOAA, and USGS), international agencies (such as IOC/IODE, UN, and JAXA) and organizations (such as ESIP, IOOS/DMAC, GOSIC, GLOBEC, OBIS, and GoMODP).

  5. A Solr Powered Architecture for Scientific Metadata Search Applications

    Science.gov (United States)

    Reed, S. A.; Billingsley, B. W.; Harper, D.; Kovarik, J.; Brandt, M.

    2014-12-01

    Discovering and obtaining resources for scientific research is increasingly difficult but Open Source tools have been implemented to provide inexpensive solutions for scientific metadata search applications. Common practices used in modern web applications can improve the quality of scientific data as well as increase availability to a wider audience while reducing costs of maintenance. Motivated to improve discovery and access of scientific metadata hosted at NSIDC and the need to aggregate many areas of arctic research, the National Snow and Ice Data Center (NSIDC) and Advanced Cooperative Arctic Data and Information Service (ACADIS) contributed to a shared codebase used by the NSIDC Search and Arctic Data Explorer (ADE) portals. We implemented the NSIDC Search and ADE to improve search and discovery of scientific metadata in many areas of cryospheric research. All parts of the applications are available free and open for reuse in other applications and portals. We have applied common techniques that are widely used by search applications around the web and with the goal of providing quick and easy access to scientific metadata. We adopted keyword search auto-suggest which provides a dynamic list of terms and phrases that closely match characters as the user types. Facet queries are another technique we have implemented to filter results based on aspects of the data like the instrument used or temporal duration of the data set. Service APIs provide a layer between the interface and the database and are shared between the NSIDC Search and ACADIS ADE interfaces. We also implemented a shared data store between both portals using Apache Solr (an Open Source search engine platform that stores and indexes XML documents) and leverage many powerful features including geospatial search and faceting. This presentation will discuss the application architecture as well as tools and techniques used to enhance search and discovery of scientific metadata.

  6. METADATA DRIVEN EFFICIENT KEY GENERATION AND DISTRIBUTION IN CLOUD SECURITY

    Directory of Open Access Journals (Sweden)

    R. Anitha

    2014-01-01

    Full Text Available With rapid development of cloud computing to a greater extent IT industries outsource their sensitive data at cloud data storage location. To keep the stored data confidential against untrusted cloud service providers, a natural way is to store only encrypted data in the cloud severs and providing an efficient access control mechanism using a competent cipher key-Cmxn, which is becoming a promising cryptographic solution. In this proposed model the cipher key is generated based on attributes of metadata. The key problems of this approach includes, the generation of cipher key-Cmxn and establishing an access control mechanism for the encrypted data using cipher key, where keys cannot be revoked without the involvement of data owner and the Metadata Data Server (MDS, hence makes data owner feels comfortable about the data stored. From this study, we propose a novel Metadata driven efficient key generation and distribution policies for cloud data security system by exploiting the characteristic of the metadata stored. Our design enforces security by providing two novel features. 1. Generation of Cipher key-Cmxn using modified feistel network, which holds good for the avalanche effect as each round of the feistel function, depends on the previous round. 2. A novel key distribution policy is designed where the encryption and decryption keys cannot be compromised without the involvement of data owner and the Metadata Data Server (MDS, hence makes data owner comfortable about the data stored. We have implemented a security model that incorporates our ideas and evaluated the performance and scalability of the secured model.

  7. RESTful Access to NOAA's Space Weather Data and Metadata

    Science.gov (United States)

    Kihn, E. A.; Elespuru, P. R.; Zhizhin, M.

    2010-12-01

    The Space Physics Interactive Data Resource (SPIDR) (http://spidr.ngdc.noaa.gov) is a web based application for searching, accessing and interacting with NOAA’s space related data holdings. SPIDR serves as one of several interfaces to the National Geophysical Data Center's archived digital holdings. The SPIDR system while successful in delivering data and visualization to clients was also found to be limited in its ability to interact with other programs, its ability to integrate with alternate work-flows and its support for multiple user interfaces (UI). As such in 2006 the SPIDR development team implemented a SOAP based interface to SPIDR through which outside developers could make use of the resource. It was our finding however that despite our best efforts at documentation, the interface remained elusive to many users. That is to say a few strong programmers were able to format and use the XML messaging but in general it did not make the data more accessible. In response SPIDR has been extended to include a REST style web services API for all time series data. This provides direct, synchronous, simple programmatic access to over 200 individual parameters representing space weather data directly from the NGDC archive. In addition to the data service SPIDR has implemented a metadata service which allows users to get Federal Geographic Data Committee (FGDC )style metadata records describing all available data and stations. This metadata will migrate to the NASA Space Physics Archive Search and Extract ( SPASE) style in future versions in order to provide further detail. The combination of data, metadata and visualization tools available through SPIDR combine to make it a powerful virtual observatory (VO). When this is combined with a content rich metadata system we have experience vastly greater user response and usage This talk will present details of the development as well as lessons learned from 10 years of SPIDR development.

  8. The National Digital Information Infrastructure Preservation Program; Metadata Principles and Practicalities; Challenges for Service Providers when Importing Metadata in Digital Libraries; Integrated and Aggregated Reference Services.

    Science.gov (United States)

    Friedlander, Amy; Duval, Erik; Hodgins, Wayne; Sutton, Stuart; Weibel, Stuart L.; McClelland, Marilyn; McArthur, David; Giersch, Sarah; Geisler, Gary; Hodgkin, Adam

    2002-01-01

    Includes 6 articles that discuss the National Digital Information Infrastructure Preservation Program at the Library of Congress; metadata in digital libraries; integrated reference services on the Web. (LRW)

  9. The Ontological Perspectives of the Semantic Web and the Metadata Harvesting Protocol: Applications of Metadata for Improving Web Search.

    Science.gov (United States)

    Fast, Karl V.; Campbell, D. Grant

    2001-01-01

    Compares the implied ontological frameworks of the Open Archives Initiative Protocol for Metadata Harvesting and the World Wide Web Consortium's Semantic Web. Discusses current search engine technology, semantic markup, indexing principles of special libraries and online databases, and componentization and the distinction between data and…

  10. [Population dynamics of ground carabid beetles and spiders in a wheat field along the wheat-alfalfa interface and their response to alfalfa mowing].

    Science.gov (United States)

    Liu, Wen-Hui; Hu, Yi-Jun; Hu, Wen-Chao; Hong, Bo; Guan, Xiao-Qing; Ma, Shi-Yu; He, Da-Han

    2014-09-01

    Taking the wheat-alfalfa and wheat-wheat interfaces as model systems, sampling points were set by the method of pitfall trapping in the wheat field at the distances of 3 m, 6 m, 9 m, 12 m, 15 m, 18 m, 21 m, 24 m, and 27 m from the interface. The species composition and abundance of ground carabid beetles and spiders captured in pitfalls were investigated. The results showed that, to some extent there was an edge effect on species diversity and abundance of ground carabid beetles and spiders along the two interfaces. A marked edge effect was observed between 15 m and 18 m along the alfalfa-wheat interface, while no edge effect was found at a distance over 20 m. The edge effect along the wheat-wheat interface was weaker in comparison to the alfalfa-wheat interface. Alfalfa mowing resulted in the migration of a large number of ground carabid beetles and spiders to the adjacent wheat filed. During ten days since mowing, both species and abundance of ground carabid beetles and spiders increased in wheat filed within the distance of 20 m along the alfalfa-wheat interface. The spatial distribution of species diversity of ground beetles and spiders, together with the population abundance of the dominant Chlaenius pallipes and Pardosa astrigera, were depicted, which could directly indicate the migrating process of natural enemy from alfalfa to wheat field.

  11. Beta-Amylases from Alfalfa (Medicago sativa L.) Roots.

    Science.gov (United States)

    Doehlert, D C; Duke, S H; Anderson, L

    1982-05-01

    Amylase was found in high activity (193 international units per milligram protein) in the tap root of alfalfa (Medicago sativa L. cv. Sonora). The activity was separated by gel filtration chromatography into two fractions with molecular weights of 65,700 (heavy amylase) and 41,700 (light amylase). Activity staining of electrophoretic gels indicated the presence of one isozyme in the heavy amylase fraction and two in the light amylase fraction. Three amylase isozymes with electrophoretic mobilities identical to those in the heavy and the light amylase fractions were the only amylases identified in crude root preparations. Both heavy and light amylases hydrolyzed amylopectin, soluble starch, and amylose but did not hydrolyze pullulan or beta-limit dextrin. The ratio of viscosity change to reducing power production during starch hydrolysis was identical for both alfalfa amylase fractions and sweet potato beta-amylase, while that of bacterial alpha-amylase was considerably higher. The identification of maltose and beta-limit dextrin as hydrolytic end-products confirmed that these alfalfa root amylases are all beta-amylases.The pH optimum for both beta-amylase fractions was 6.0. Both light and heavy beta-amylases showed normal Michaelis-Menten kinetics, with soluble starch as substrate, and had respectively K(m) values of 5.9 and 6.8 milligrams starch per milliliter and V(max) of 640 and 130 international units per milligram protein. Arrhenius plots indicated that the energy of activation for the heavy beta-amylase remained relatively unchanged (12.7 to 13.0 kilocalories per mole) from 0 to 30 degrees C, whereas the energy of activation for the light amylase increased from 12.0 to about 28.0 kilocalories per mole at 8.7 degrees C as temperature was lowered. The light amylase was shown to be inhibited by maltose.

  12. Identifying OH Imposters in the ALFALFA Neutral Hydrogen Survey

    Science.gov (United States)

    Suess, Katherine A.; Darling, Jeremy; Haynes, Martha P.; Giovanelli, Riccardo

    2016-06-01

    OH megamasers (OHMs) are rare, luminous molecular masers that are typically observed in (ultra) luminous infrared galaxies and serve as markers of major galaxy mergers. In blind emission line surveys such as the Arecibo Legacy Fast Arecibo L-Band Feed Array (ALFALFA) survey for neutral hydrogen (H I), OHMs at z ˜ 0.2 can mimic z ˜ 0.05 H I lines. We present the results of optical spectroscopy of ambiguous H I detections in the ALFALFA 40 per cent data release detected by the Wide Field Infrared Survey Explorer (WISE) but with uncertain optical counterparts. The optical redshifts, obtained from observations at the Apache Point Observatory, revealed five new OHMs and identified 129 H I optical counterparts. 60 candidates remain ambiguous. The new OHMs are the first detected in a blind spectral line survey. The number of OHMs in ALFALFA is consistent with predictions from the OH luminosity function. Additionally, the mid-infrared magnitudes and colours of the OHM host galaxies found in a blind survey do not seem to differ from those found in previous targeted surveys. This validates the methods used in previous IR-selected OHM surveys and indicates there is no previously unknown OHM-producing population at z ˜ 0.2. We also provide a method for future surveys to separate OH megamasers from 99 per cent of H I line emitters without optical spectroscopy by using WISE infrared colours and magnitudes. Since the fraction of OHMs found in flux-limited H I surveys is expected to increase with the survey's redshift, this selection method can be applied to future flux-limited high-redshift hydrogen surveys.

  13. Extending attributes page: a scheme for enhancing the reliability of storage system metadata*

    Institute of Scientific and Technical Information of China (English)

    Juan WANG; Dan FENG; Fang WANG; Cheng-tao LU

    2009-01-01

    In an object-based storage system, a novel scheme named EAP (extending attributes page) is presented to enhance the metadata reliability of the system by adding the user object file information attributes page for each user object and storing the file-related attributes of each user object in object-based storage devices. The EAP scheme requires no additional hardware equipments compared to a general method which uses backup metadata servers to improve the metadata reliability. Leveraging a Markov chain, this paper compares the metadata reliability of the system using the EAP scheme with that using only metadata servers to offer the file metadata service. Our results demonstrate that the EAP scheme can dramatically enhance the reliability of storage system metadata.

  14. Inferring Metadata for a Semantic Web Peer-to-Peer Environment

    Directory of Open Access Journals (Sweden)

    Mark Painter

    2004-04-01

    Full Text Available Learning Objects Metadata (LOM aims at describing educational resources in order to allow better reusability and retrieval. In this article we show how additional inference rules allows us to derive additional metadata from existing ones. Additionally, using these rules as integrity constraints helps us to define the constraints on LOM elements, thus taking an important step toward a complete axiomatization of LOM metadata (with the goal of transforming the LOM definitions from a simple syntactical description into a complete ontology. We will use RDF metadata descriptions and Prolog as an inference language. We show how these rules can be applied for the extensions of course metadata using an existing test bed with several courses. Based on the Edutella peer-to-peer architecture we can easily make RDF metadata accessible to a whole community using Edutella peers that manage RDF metadata. By processing inference rules we can achieve better search results.

  15. Treating metadata as annotations: separating the content markup from the content

    Directory of Open Access Journals (Sweden)

    Fredrik Paulsson

    2007-11-01

    Full Text Available The use of digital learning resources creates an increasing need for semantic metadata, describing the whole resource, as well as parts of resources. Traditionally, schemas such as Text Encoding Initiative (TEI have been used to add semantic markup for parts of resources. This is not sufficient for use in a ”metadata ecology”, where metadata is distributed, coherent to different Application Profiles, and added by different actors. A new methodology, where metadata is “pointed in” as annotations, using XPointers, and RDF is proposed. A suggestion for how such infrastructure can be implemented, using existing open standards for metadata, and for the web is presented. We argue that such methodology and infrastructure is necessary to realize the decentralized metadata infrastructure needed for a “metadata ecology".

  16. Star Formation in Undergraduate ALFALFA Team Galaxy Groups and Clusters

    Science.gov (United States)

    Koopmann, Rebecca A.; Durbala, Adriana; Finn, Rose; Haynes, Martha P.; Coble, Kimberly A.; Craig, David W.; Hoffman, G. Lyle; Miller, Brendan P.; Crone-Odekon, Mary; O'Donoghue, Aileen A.; Troischt, Parker; Undergraduate ALFALFA Team; ALFALFA Team

    2017-01-01

    The Undergraduate ALFALFA Team (UAT) Groups project is a coordinated study of gas and star formation properties of galaxies in and around 36 nearby (zwork undertaken by faculty and students at different institutions within the UAT. Here we present results from our wide area Hα and broadband R imaging project carried out with the WIYN 0.9m+MOSAIC/HDI at KPNO, including an analysis of radial star formation rates and extents of galaxies in the NGC 5846, Abell 779, NRGb331, and HCG 69 groups/clusters. This work has been supported by NSF grant AST-1211005 and AST-1637339.

  17. PERACETIC ACID PRETREATMENT OF ALFALFA STEM AND ASPEN BIOMASS

    OpenAIRE

    Lei Xu; Ulrike W. Tschirner

    2011-01-01

    Alfalfa stems and ground aspen were exposed to peracetic acid (0.5 to 9% on biomass) at temperatures ranging from 40 to 100° C and reaction times from 1 to 5 hours. Glucose release as a percentage of total cellulose content was determined using subsequent standard enzymatic hydrolysis. Statistical analysis confirmed that aspen showed a strong response to peracetic acid addition rate. 9% peracetic acid removed 14% of the original lignin and increased the rate of glucose release from 23% to 44%...

  18. IDENTIFICATION OF SOIL FUNGI ISOLATED FROM ALFALFA (Medicago sativa L TO FIND SPECIFIC FUNGI WHICH IMPROVED THE GROWTH OF ALFALFA

    Directory of Open Access Journals (Sweden)

    T. Yudiarti

    2014-10-01

    Full Text Available Objective of the study was to identify all kinds of fungi which can life in the alfalfa plantation inBaturaden Purwokerto-Central Java. Fungi used in this study was 38 isolates. All fungi have been takenfrom the isolation of soil and root of diseased plant. Macroscopic and microscopic methods were usedfor identification. Potato Dextrose Agar (PDA medium was used to grow the fungi. All fungi wereidentified using book identification of fungi. The results showed that from 38 isolates, six species wasdetermined and one was unidentifed. Those species identified were Cuninghammela sp, Trichoderma sp,Vertilicium sp, Eupenicillium sp, Pythium sp, Aspergillus sp.

  19. The Undergraduate ALFALFA Team: Outcomes for Over 250 Undergraduate Participants

    Science.gov (United States)

    Troischt, Parker; Koopmann, Rebecca A.; Haynes, Martha P.; ALFALFA Team

    2016-01-01

    The NSF-sponsored Undergraduate ALFALFA (Arecibo Legacy Fast ALFA) Team (UAT) is a consortium of 19 institutions founded to promote undergraduate research and faculty development within the extragalactic ALFALFA HI blind survey project and follow-up programs. In this talk we present outcomes for the more than 250 undergraduate students who have who have participated in the program during the 8 years of funding. 40% of these students have been women and members of underrepresented groups. To date 148 undergraduate students have attended annual workshops at Arecibo Observatory, interacting with faculty, graduate students, their peers, and Arecibo staff in lectures, group activities, tours, and observing runs. Team faculty have supervised 159 summer research projects and 120 academic year (e.g., senior thesis) projects. 68 students have traveled to Arecibo Observatory for observing runs and 55 have presented their results at national meetings such as the AAS. Through participation in the UAT, students are made aware of career paths they may not have previously considered. More than 90% of alumni are attending graduate school and/or pursuing a career in STEM. 42% of those pursuing graduate degrees in Physics or Astronomy are women. This work has been supported by NSF grants AST-0724918/0902211, AST-075267/0903394, AST-0725380, and AST-1211005

  20. Gas, Stars and Star Formation in ALFALFA Dwarf Galaxies

    CERN Document Server

    Huang, S; Giovanelli, R; Brinchmann, J; Stierwalt, S; Neff, S G

    2012-01-01

    We examine the global properties of the stellar and HI components of 229 low HI mass dwarf galaxies extracted from the ALFALFA survey, including a complete sample of 176 galaxies with HI masses < 10^{7.7} M_sun and HI line widths < 80 km s^{-1}. SDSS data are combined with photometric properties derived from GALEX to derive stellar masses (M_*) and star formation rates (SFRs) by fitting their UV-optical spectral energy distributions (SEDs). In optical images, many of the ALFALFA dwarfs are faint and of low surface brightness; only 56% of those within the SDSS footprint have a counterpart in the SDSS spectroscopic survey. A large fraction of the dwarfs have high specific star formation rates (SSFRs) and estimates of their SFRs and M_* obtained by SED fitting are systematically smaller than ones derived via standard formulae assuming a constant SFR. The increased dispersion of the SSFR distribution at M_* < 10^8 M_sun is driven by a set of dwarf galaxies that have low gas fractions and SSFRs; some of t...

  1. Modelling the dynamics of feral alfalfa populations and its management implications.

    Directory of Open Access Journals (Sweden)

    Muthukumar V Bagavathiannan

    Full Text Available BACKGROUND: Feral populations of cultivated crops can pose challenges to novel trait confinement within agricultural landscapes. Simulation models can be helpful in investigating the underlying dynamics of feral populations and determining suitable management options. METHODOLOGY/PRINCIPAL FINDINGS: We developed a stage-structured matrix population model for roadside feral alfalfa populations occurring in southern Manitoba, Canada. The model accounted for the existence of density-dependence and recruitment subsidy in feral populations. We used the model to investigate the long-term dynamics of feral alfalfa populations, and to evaluate the effectiveness of simulated management strategies such as herbicide application and mowing in controlling feral alfalfa. Results suggest that alfalfa populations occurring in roadside habitats can be persistent and less likely to go extinct under current roadverge management scenarios. Management attempts focused on controlling adult plants alone can be counterproductive due to the presence of density-dependent effects. Targeted herbicide application, which can achieve complete control of seedlings, rosettes and established plants, will be an effective strategy, but the seedbank population may contribute to new recruits. In regions where roadside mowing is regularly practiced, devising a timely mowing strategy (early- to mid-August for southern Manitoba, one that can totally prevent seed production, will be a feasible option for managing feral alfalfa populations. CONCLUSIONS/SIGNIFICANCE: Feral alfalfa populations can be persistent in roadside habitats. Timely mowing or regular targeted herbicide application will be effective in managing feral alfalfa populations and limit feral-population-mediated gene flow in alfalfa. However, in the context of novel trait confinement, the extent to which feral alfalfa populations need to be managed will be dictated by the tolerance levels established by specific production

  2. The ground truth about metadata and community detection in networks

    CERN Document Server

    Peel, Leto; Clauset, Aaron

    2016-01-01

    Across many scientific domains, there is common need to automatically extract a simplified view or a coarse-graining of how a complex system's components interact. This general task is called community detection in networks and is analogous to searching for clusters in independent vector data. It is common to evaluate the performance of community detection algorithms by their ability to find so-called \\textit{ground truth} communities. This works well in synthetic networks with planted communities because such networks' links are formed explicitly based on the planted communities. However, there are no planted communities in real world networks. Instead, it is standard practice to treat some observed discrete-valued node attributes, or metadata, as ground truth. Here, we show that metadata are not the same as ground truth, and that treating them as such induces severe theoretical and practical problems. We prove that no algorithm can uniquely solve community detection, and we prove a general No Free Lunch the...

  3. CAMELOT: Cloud Archive for MEtadata, Library and Online Toolkit

    Science.gov (United States)

    Ginsburg, Adam; Kruijssen, J. M. Diederik; Longmore, Steven N.; Koch, Eric; Glover, Simon C. O.; Dale, James E.; Commerçon, Benoît; Giannetti, Andrea; McLeod, Anna F.; Testi, Leonardo; Zahorecz, Sarolta; Rathborne, Jill M.; Zhang, Qizhou; Fontani, Francesco; Beltrán, Maite T.; Rivilla, Victor M.

    2016-05-01

    CAMELOT facilitates the comparison of observational data and simulations of molecular clouds and/or star-forming regions. The central component of CAMELOT is a database summarizing the properties of observational data and simulations in the literature through pertinent metadata. The core functionality allows users to upload metadata, search and visualize the contents of the database to find and match observations/simulations over any range of parameter space. To bridge the fundamental disconnect between inherently 2D observational data and 3D simulations, the code uses key physical properties that, in principle, are straightforward for both observers and simulators to measure — the surface density (Sigma), velocity dispersion (sigma) and radius (R). By determining these in a self-consistent way for all entries in the database, it should be possible to make robust comparisons.

  4. Data Bookkeeping Service 3 - Providing event metadata in CMS

    CERN Document Server

    Giffels, Manuel; Riley, Daniel

    2014-01-01

    The Data Bookkeeping Service 3 provides a catalog of event metadata for Monte Carlo and recorded data of the Compact Muon Solenoid (CMS) experiment at the Large Hadron Collider (LHC) at CERN, Geneva. It comprises all necessary information for tracking datasets, their processing history and associations between runs, files and datasets, on a large scale of about $200,000$ datasets and more than $40$ million files, which adds up in around $700$ GB of metadata. The DBS is an essential part of the CMS Data Management and Workload Management (DMWM) systems, all kind of data-processing like Monte Carlo production, processing of recorded event data as well as physics analysis done by the users are heavily relying on the information stored in DBS.

  5. A case for user-generated sensor metadata

    Science.gov (United States)

    Nüst, Daniel

    2015-04-01

    Cheap and easy to use sensing technology and new developments in ICT towards a global network of sensors and actuators promise previously unthought of changes for our understanding of the environment. Large professional as well as amateur sensor networks exist, and they are used for specific yet diverse applications across domains such as hydrology, meteorology or early warning systems. However the impact this "abundance of sensors" had so far is somewhat disappointing. There is a gap between (community-driven) sensor networks that could provide very useful data and the users of the data. In our presentation, we argue this is due to a lack of metadata which allows determining the fitness of use of a dataset. Syntactic or semantic interoperability for sensor webs have made great progress and continue to be an active field of research, yet they often are quite complex, which is of course due to the complexity of the problem at hand. But still, we see the most generic information to determine fitness for use is a dataset's provenance, because it allows users to make up their own minds independently from existing classification schemes for data quality. In this work we will make the case how curated user-contributed metadata has the potential to improve this situation. This especially applies for scenarios in which an observed property is applicable in different domains, and for set-ups where the understanding about metadata concepts and (meta-)data quality differs between data provider and user. On the one hand a citizen does not understand the ISO provenance metadata. On the other hand a researcher might find issues in publicly accessible time series published by citizens, which the latter might not be aware of or care about. Because users will have to determine fitness for use for each application on their own anyway, we suggest an online collaboration platform for user-generated metadata based on an extremely simplified data model. In the most basic fashion

  6. ATLAS Metadata Infrastructure Evolution for Run 2 and Beyond

    CERN Document Server

    van Gemmeren, Peter; The ATLAS collaboration; Malon, David; Vaniachine, Alexandre

    2015-01-01

    ATLAS developed and employed for Run 1 of the Large Hadron Collider a sophisticated infrastructure for metadata handling in event processing jobs. This infrastructure profits from a rich feature set provided by the ATLAS execution control framework, including standardized interfaces and invocation mechanisms for tools and services, segregation of transient data stores with concomitant object lifetime management, and mechanisms for handling occurrences asynchronous to the control framework’s state machine transitions. This metadata infrastructure is evolving and being extended for Run 2 to allow its use and reuse in downstream physics analyses, analyses that may or may not utilize the ATLAS control framework. At the same time, multiprocessing versions of the control framework and the requirements of future multithreaded frameworks are leading to redesign of components that use an incident-handling approach to asynchrony. The increased use of scatter-gather architectures, both local and distributed, requires ...

  7. Network structure, metadata and the prediction of missing nodes

    CERN Document Server

    Hric, Darko; Fortunato, Santo

    2016-01-01

    The empirical validation of community detection methods is often based on available annotations on the nodes that serve as putative indicators of the large-scale network structure. Most often, the suitability of the annotations as topological descriptors itself is not assessed, and without this it is not possible to ultimately distinguish between actual shortcomings of the community detection algorithms on one hand, and the incompleteness, inaccuracy or structured nature of the data annotations themselves on the other. In this work we present a principled method to access both aspects simultaneously. We construct a joint generative model for the data and metadata, and a non-parametric Bayesian framework to infer its parameters from annotated datasets. We assess the quality of the metadata not according to its direct alignment with the network communities, but rather in its capacity to predict the placement of edges in the network. We also show how this feature can be used to predict the connections to missing...

  8. Automatic Metadata Extraction - The High Energy Physics Use Case

    CERN Document Server

    Boyd, Joseph; Rajman, Martin

    Automatic metadata extraction (AME) of scientific papers has been described as one of the hardest problems in document engineering. Heterogeneous content, varying style, and unpredictable placement of article components render the problem inherently indeterministic. Conditional random fields (CRF), a machine learning technique, can be used to classify document metadata amidst this uncertainty, annotating document contents with semantic labels. High energy physics (HEP) papers, such as those written at CERN, have unique content and structural characteristics, with scientific collaborations of thousands of authors altering article layouts dramatically. The distinctive qualities of these papers necessitate the creation of specialised datasets and model features. In this work we build an unprecedented training set of HEP papers and propose and evaluate a set of innovative features for CRF models. We build upon state-of-the-art AME software, GROBID, a tool coordinating a hierarchy of CRF models in a full document ...

  9. Metadata and Data Management for the Keck Observatory Archive

    CERN Document Server

    Tran, H D; Goodrich, R W; Mader, J A; Swain, M; Laity, A C; Kong, M; Gelino, C R; Berriman, G B

    2014-01-01

    A collaboration between the W. M. Keck Observatory (WMKO) in Hawaii and the NASA Exoplanet Science Institute (NExScI) in California, the Keck Observatory Archive (KOA) was commissioned in 2004 to archive observing data from WMKO, which operates two classically scheduled 10 m ground-based telescopes. The observing data from Keck is not suitable for direct ingestion into the archive since the metadata contained in the original FITS headers lack the information necessary for proper archiving. Coupled with different standards among instrument builders and the heterogeneous nature of the data inherent in classical observing, in which observers have complete control of the instruments and their observations, the data pose a number of technical challenges for KOA. We describe the methodologies and tools that we have developed to successfully address these difficulties, adding content to the FITS headers and "retrofitting" the metadata in order to support archiving Keck data, especially those obtained before the arch...

  10. ISO, FGDC, DIF and Dublin Core - Making Sense of Metadata Standards for Earth Science Data

    Science.gov (United States)

    Jones, P. R.; Ritchey, N. A.; Peng, G.; Toner, V. A.; Brown, H.

    2014-12-01

    Metadata standards provide common definitions of metadata fields for information exchange across user communities. Despite the broad adoption of metadata standards for Earth science data, there are still heterogeneous and incompatible representations of information due to differences between the many standards in use and how each standard is applied. Federal agencies are required to manage and publish metadata in different metadata standards and formats for various data catalogs. In 2014, the NOAA National Climatic data Center (NCDC) managed metadata for its scientific datasets in ISO 19115-2 in XML, GCMD Directory Interchange Format (DIF) in XML, DataCite Schema in XML, Dublin Core in XML, and Data Catalog Vocabulary (DCAT) in JSON, with more standards and profiles of standards planned. Of these standards, the ISO 19115-series metadata is the most complete and feature-rich, and for this reason it is used by NCDC as the source for the other metadata standards. We will discuss the capabilities of metadata standards and how these standards are being implemented to document datasets. Successful implementations include developing translations and displays using XSLTs, creating links to related data and resources, documenting dataset lineage, and establishing best practices. Benefits, gaps, and challenges will be highlighted with suggestions for improved approaches to metadata storage and maintenance.

  11. Metadata Embeddings for User and Item Cold-start Recommendations

    OpenAIRE

    Kula, Maciej

    2015-01-01

    I present a hybrid matrix factorisation model representing users and items as linear combinations of their content features' latent factors. The model outperforms both collaborative and content-based models in cold-start or sparse interaction data scenarios (using both user and item metadata), and performs at least as well as a pure collaborative matrix factorisation model where interaction data is abundant. Additionally, feature embeddings produced by the model encode semantic information in...

  12. Home | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us ...s even true for databases with high-quality datasets. The Life Science Database Archiv...te as national public goods. The Archive makes it easier for many people to search datasets by metadata (des...s with clear terms of use (see here for detailed descriptions). In addition, the Archive provides datasets i...r contribution of each research to life science. Lifescience Database Archive Archiv

  13. Metadata and API Based Environment Aware Content Delivery Architecture

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    One of the limitations of current content delivery networks is lack of support for environment aware content delivery. This paper first discusses the requirements of such support, and proposes a new metadata gateway based environment aware content delivery architecture. The paper discusses in some details key functions and technologies of environment aware content delivery architecture, including its APIs and control policies. Finally the paper presents an application to illustrate advantages of environment aware content delivery architecture in the context of next generation network.

  14. Automated Atmospheric Composition Dataset Level Metadata Discovery. Difficulties and Surprises

    Science.gov (United States)

    Strub, R. F.; Falke, S. R.; Kempler, S.; Fialkowski, E.; Goussev, O.; Lynnes, C.

    2015-12-01

    The Atmospheric Composition Portal (ACP) is an aggregator and curator of information related to remotely sensed atmospheric composition data and analysis. It uses existing tools and technologies and, where needed, enhances those capabilities to provide interoperable access, tools, and contextual guidance for scientists and value-adding organizations using remotely sensed atmospheric composition data. The initial focus is on Essential Climate Variables identified by the Global Climate Observing System - CH4, CO, CO2, NO2, O3, SO2 and aerosols. This poster addresses our efforts in building the ACP Data Table, an interface to help discover and understand remotely sensed data that are related to atmospheric composition science and applications. We harvested GCMD, CWIC, GEOSS metadata catalogs using machine to machine technologies - OpenSearch, Web Services. We also manually investigated the plethora of CEOS data providers portals and other catalogs where that data might be aggregated. This poster is our experience of the excellence, variety, and challenges we encountered.Conclusions:1.The significant benefits that the major catalogs provide are their machine to machine tools like OpenSearch and Web Services rather than any GUI usability improvements due to the large amount of data in their catalog.2.There is a trend at the large catalogs towards simulating small data provider portals through advanced services. 3.Populating metadata catalogs using ISO19115 is too complex for users to do in a consistent way, difficult to parse visually or with XML libraries, and too complex for Java XML binders like CASTOR.4.The ability to search for Ids first and then for data (GCMD and ECHO) is better for machine to machine operations rather than the timeouts experienced when returning the entire metadata entry at once. 5.Metadata harvest and export activities between the major catalogs has led to a significant amount of duplication. (This is currently being addressed) 6.Most (if not

  15. Cultivation and identification of the transgenic alfalfa containing Echinococcus granulosus Eg95 gene%细粒棘球绦虫转Eg95基因苜蓿疫苗的培育及鉴定

    Institute of Scientific and Technical Information of China (English)

    叶艳菊; 李文桂; 周辉

    2009-01-01

    Objective To cultivate and identify the transgenic affalfa containing Echinococcus granulosus Eg95 gene. Methods The alfalfa plants were transformed by co-cultivating alfalfa cotyledons via recombinant Agrobacterium tumefaciens LBA4404 harboring pBI-Eg95. The transgenic alfalfa explants were selected by kanamyein after calli formation, shoots and roots regeneration in the selective medium, the seedlings of transgenic plants were obtained which were finally transplanted into pots containing nutrient soil. After 2-3 months growth, the complete transgenic alfalfa plants containing Echinococcus granulosus Eg95 gene were obtained. To identify the transgenic alfalfa plants, the total DNA, RNA and leaf protein were extracted from fresh leaf tissue of the transgenic alfalfa plants and confirmed by PCR, RT-PCR, SDS-PAGE and Western blot assay. Results A specific band around 471 bp was amplified by PCR with total DNA, and the same band was obtained by RT-PCR with total RNA, which confirmed that the Eg95 gene was stably integrated into the transformed alfalfa genome. SDS-PAGE analysis showed that the relative molecular mass(Mr) of the expressed protein was about 16.5×103, consistent with the Eg95 protein, and the level of Eg95 expression was up to 0.06% of total soluble leaf protein by Bio-Rad Quantity one assay. Western blot verified the expressed protein was reactive with the sera of mice infected with Echinococcus granulosus. Conclusion The transgenic alfalfa plants containing Echinococcus granulosus Eg95 gene are successfully cultivated.%目的 培育并鉴定细粒棘球绦虫转Eg95基因苜蓿疫苗.方法 利用转pBI-Eg95质粒的根癌农杆菌LBA4404株介导的苜蓿子叶浸染法,将Eg95基因导人紫花苜蓿基因组,转Eg95基因苜蓿外植体在含有卡那霉素的选择培养基上经愈伤、出芽和生根阶段生长出小苗,最后移栽到装有营养土的花盆中,生长2~3个月,获得完整的转Eg95基因苜蓿疫苗.提取转Eg95基因苜

  16. Relationship of Resistance to Meloidogyne chitwoodi (race 2) and M. hapla in Alfalfa

    OpenAIRE

    Per H McCord

    2012-01-01

    In the Pacific Northwest, alfalfa (Medicago sativa) is host to two species of root-knot nematodes, including race 2 of the Columbia root-knot nematode (Meloidogyne chitwoodi) and the northern root-knot nematode (Meloidogyne hapla). In addition to the damage caused to alfalfa itself by M. hapla, alfalfa’s host status to both species leaves large numbers of nematodes available to damage rotation crops, of which potato is the most important. A nematode-resistant alfalfa germplasm release, W12SR2...

  17. Evaluación cuantitativa de diez variedades de alfalfa (Medicago sativa L.).

    OpenAIRE

    Álvarez Vázquez, Perpetuo

    2013-01-01

    En México, la alfalfa es la leguminosa más utilizada en la alimentación del ganado lechero, debido a su alto rendimiento y valor nutritivo. El objetivo del presente estudio fue evaluar las variables que determinan el crecimiento y rendimiento de diez variedades de alfalfa a intervalos de corte definidos estacionalmente. El estudio se realizó de septiembre de 2011 a septiembre de 2012 en el Colegio de Postgraduados, Campus Montecillo, Texcoco, México. Las variedades de alfalfa estudiadas fuero...

  18. Embedding Metadata and Other Semantics in Word Processing Documents

    Directory of Open Access Journals (Sweden)

    Peter Sefton

    2009-10-01

    Full Text Available This paper describes a technique for embedding document metadata, and potentially other semantic references inline in word processing documents, which the authors have implemented with the help of a software development team. Several assumptions underly the approach; It must be available across computing platforms and work with both Microsoft Word (because of its user base and OpenOffice.org (because of its free availability. Further the application needs to be acceptable to and usable by users, so the initial implementation covers only small number of features, which will only be extended after user-testing. Within these constraints the system provides a mechanism for encoding not only simple metadata, but for inferring hierarchical relationships between metadata elements from a ‘flat’ word processing file.The paper includes links to open source code implementing the techniques as part of a broader suite of tools for academic writing. This addresses tools and software, semantic web and data curation, integrating curation into research workflows and will provide a platform for integrating work on ontologies, vocabularies and folksonomies into word processing tools.

  19. The ATLAS Eventlndex: data flow and inclusion of other metadata

    Science.gov (United States)

    Barberis, D.; Cárdenas Zárate, S. E.; Favareto, A.; Fernandez Casani, A.; Gallas, E. J.; Garcia Montoro, C.; Gonzalez de la Hoz, S.; Hrivnac, J.; Malon, D.; Prokoshin, F.; Salt, J.; Sanchez, J.; Toebbicke, R.; Yuan, R.; ATLAS Collaboration

    2016-10-01

    The ATLAS EventIndex is the catalogue of the event-related metadata for the information collected from the ATLAS detector. The basic unit of this information is the event record, containing the event identification parameters, pointers to the files containing this event as well as trigger decision information. The main use case for the EventIndex is event picking, as well as data consistency checks for large production campaigns. The EventIndex employs the Hadoop platform for data storage and handling, as well as a messaging system for the collection of information. The information for the EventIndex is collected both at Tier-0, when the data are first produced, and from the Grid, when various types of derived data are produced. The EventIndex uses various types of auxiliary information from other ATLAS sources for data collection and processing: trigger tables from the condition metadata database (COMA), dataset information from the data catalogue AMI and the Rucio data management system and information on production jobs from the ATLAS production system. The ATLAS production system is also used for the collection of event information from the Grid jobs. EventIndex developments started in 2012 and in the middle of 2015 the system was commissioned and started collecting event metadata, as a part of ATLAS Distributed Computing operations.

  20. Metadata Wizard: an easy-to-use tool for creating FGDC-CSDGM metadata for geospatial datasets in ESRI ArcGIS Desktop

    Science.gov (United States)

    Ignizio, Drew A.; O'Donnell, Michael S.; Talbert, Colin B.

    2014-01-01

    Creating compliant metadata for scientific data products is mandated for all federal Geographic Information Systems professionals and is a best practice for members of the geospatial data community. However, the complexity of the The Federal Geographic Data Committee’s Content Standards for Digital Geospatial Metadata, the limited availability of easy-to-use tools, and recent changes in the ESRI software environment continue to make metadata creation a challenge. Staff at the U.S. Geological Survey Fort Collins Science Center have developed a Python toolbox for ESRI ArcDesktop to facilitate a semi-automated workflow to create and update metadata records in ESRI’s 10.x software. The U.S. Geological Survey Metadata Wizard tool automatically populates several metadata elements: the spatial reference, spatial extent, geospatial presentation format, vector feature count or raster column/row count, native system/processing environment, and the metadata creation date. Once the software auto-populates these elements, users can easily add attribute definitions and other relevant information in a simple Graphical User Interface. The tool, which offers a simple design free of esoteric metadata language, has the potential to save many government and non-government organizations a significant amount of time and costs by facilitating the development of The Federal Geographic Data Committee’s Content Standards for Digital Geospatial Metadata compliant metadata for ESRI software users. A working version of the tool is now available for ESRI ArcDesktop, version 10.0, 10.1, and 10.2 (downloadable at http:/www.sciencebase.gov/metadatawizard).

  1. Alfalfa (Medicago sativa L.) shoot saponins: identification and bio-activity by the assessment of aphid feeding.

    Science.gov (United States)

    Mazahery-Laghab, H; Yazdi-Samadi, B; Bagheri, M; Bagheri, A R

    2011-01-01

    Biochemical components in alfalfa (Medicago sativa L.), such as saponins, can act as protecting factors against bio-stresses. Saponins are also antifeedants and show oral toxicity towards higher and lower animals. Changes in saponins, such as variation in the carbon skeleton, or hydrolysis of saponin glycosides and other conjugates, may change their biological effects. The aims of this research were to study saponin variation in different growth stages of alfalfa and to investigate the biological role of saponins in the spotted alfalfa aphid, Therioaphis maculata. Saponins from alfalfa shoots in different growth stages were extracted, chemically purified and analysed by TLC. Specific saponins such as soyasaponin1 from root and shoot and two bisdesmosides of medicagenic acid, one from shoot and another from root tissues, were identified using reference compounds allowing changes in saponin composition during plant development in different shoot tissues of alfalfa to be assessed. The response of the alfalfa aphid to feeding on alfalfa in different growth stages was studied. No significant difference in the survival of aphids, from neonate to adult, was observed, but due to the antibiotic effects of saponins, two differences were found in the onset of nymph production and cumulative nymph production. The results show that the saponin composition in alfalfa changes with plant development and this, in turn, can often negatively affect the development of specific insect pests such as the spotted alfalfa aphid, suggesting a possible biological role of alfalfa saponins.

  2. Pragmatic Metadata Management for Integration into Multiple Spatial Data Infrastructure Systems and Platforms

    Science.gov (United States)

    Benedict, K. K.; Scott, S.

    2013-12-01

    While there has been a convergence towards a limited number of standards for representing knowledge (metadata) about geospatial (and other) data objects and collections, there exist a variety of community conventions around the specific use of those standards and within specific data discovery and access systems. This combination of limited (but multiple) standards and conventions creates a challenge for system developers that aspire to participate in multiple data infrastrucutres, each of which may use a different combination of standards and conventions. While Extensible Markup Language (XML) is a shared standard for encoding most metadata, traditional direct XML transformations (XSLT) from one standard to another often result in an imperfect transfer of information due to incomplete mapping from one standard's content model to another. This paper presents the work at the University of New Mexico's Earth Data Analysis Center (EDAC) in which a unified data and metadata management system has been developed in support of the storage, discovery and access of heterogeneous data products. This system, the Geographic Storage, Transformation and Retrieval Engine (GSTORE) platform has adopted a polyglot database model in which a combination of relational and document-based databases are used to store both data and metadata, with some metadata stored in a custom XML schema designed as a superset of the requirements for multiple target metadata standards: ISO 19115-2/19139/19110/19119, FGCD CSDGM (both with and without remote sensing extensions) and Dublin Core. Metadata stored within this schema is complemented by additional service, format and publisher information that is dynamically "injected" into produced metadata documents when they are requested from the system. While mapping from the underlying common metadata schema is relatively straightforward, the generation of valid metadata within each target standard is necessary but not sufficient for integration into

  3. ncISO Facilitating Metadata and Scientific Data Discovery

    Science.gov (United States)

    Neufeld, D.; Habermann, T.

    2011-12-01

    Increasing the usability and availability climate and oceanographic datasets for environmental research requires improved metadata and tools to rapidly locate and access relevant information for an area of interest. Because of the distributed nature of most environmental geospatial data, a common approach is to use catalog services that support queries on metadata harvested from remote map and data services. A key component to effectively using these catalog services is the availability of high quality metadata associated with the underlying data sets. In this presentation, we examine the use of ncISO, and Geoportal as open source tools that can be used to document and facilitate access to ocean and climate data available from Thematic Realtime Environmental Distributed Data Services (THREDDS) data services. Many atmospheric and oceanographic spatial data sets are stored in the Network Common Data Format (netCDF) and served through the Unidata THREDDS Data Server (TDS). NetCDF and THREDDS are becoming increasingly accepted in both the scientific and geographic research communities as demonstrated by the recent adoption of netCDF as an Open Geospatial Consortium (OGC) standard. One important source for ocean and atmospheric based data sets is NOAA's Unified Access Framework (UAF) which serves over 3000 gridded data sets from across NOAA and NOAA-affiliated partners. Due to the large number of datasets, browsing the data holdings to locate data is impractical. Working with Unidata, we have created a new service for the TDS called "ncISO", which allows automatic generation of ISO 19115-2 metadata from attributes and variables in TDS datasets. The ncISO metadata records can be harvested by catalog services such as ESSI-labs GI-Cat catalog service, and ESRI's Geoportal which supports query through a number of services, including OpenSearch and Catalog Services for the Web (CSW). ESRI's Geoportal Server provides a number of user friendly search capabilities for end users

  4. Alfalfa microsymbionts from different ITS and nodC lineages of Ensifer meliloti and Ensifer medicae symbiovar meliloti establish efficient symbiosis with alfalfa in Spanish acid soils.

    Science.gov (United States)

    Ramírez-Bahena, Martha-Helena; Vargas, Margarita; Martín, María; Tejedor, Carmen; Velázquez, Encarna; Peix, Álvaro

    2015-06-01

    Alfalfa (Medicago sativa L.) is an important crop worldwide whose cropping in acid soils is hampered by the poor nodulation and yield commonly attributed to the sensitivity of its endosymbionts to acid pH. In this work, we isolated several acid-tolerant strains from alfalfa nodules in three acid soils in northwestern Spain. After grouping by RAPD fingerprinting, most strains were identified as Ensifer meliloti and only two strains as Ensifer medicae according to their 16S-23S intergenic spacer (ITS) sequences that allowed the differentiation of two groups within each one of these species. The two ITS groups of E. meliloti and the ITS group I of E. medicae have been previously found in Medicago nodules; however, the group II of E. medicae has been only found to date in Prosopis alba nodules. The analysis of the nodC gene showed that all strains isolated in this study belong to the symbiovar meliloti, grouping with the type strains of E. meliloti or E. medicae, but some harboured nodC gene alleles different from those found to date in alfalfa nodules. The strains of E. medicae belong to the symbiovar meliloti which should be also recognised in this species, although they harboured a nodC allele phylogenetically divergent to those from E. meliloti strains. Microcosm experiments showed that inoculation of alfalfa with selected acid-tolerant strains significantly increased yields in acid soils representing a suitable agricultural practice for alfalfa cropping in these soils.

  5. Studies on the Alfalfa Growing Effects of Alfalfa Rhizobium%苜蓿根瘤菌剂对紫花苜蓿生长影响研究

    Institute of Scientific and Technical Information of China (English)

    樊川; 杨旭升; 曹亚斌

    2015-01-01

    通过不同剂量苜蓿根瘤菌接种两种紫花苜蓿试验,比较了接种根瘤菌剂对紫花苜蓿生长的影响。试验结果表明:接种苜蓿根瘤菌剂能够提高紫花苜蓿结瘤数量和根瘤重,促进紫花苜蓿的生长发育,增加苜蓿草的产草量。在所试验的接种剂量中,以每 kg 苜蓿种子接种12mL 根瘤菌剂为最佳接种量。%This paper studied the alfalfa growing effects of alfalfa rhizobium by inoculated different amounts.The experimental results showed that inoculating rhizobium can raise the nodulating amount of alfalfa and the weight of nodulations,promoting the growth of alfalfas and augment the productions of alfalfas.Among the different inoculated amounts,the amount of 12ml is the best inoculated amount.

  6. PENINGKATAN PRODUKSI DAN KECERNAAN BAHAN KERING ALFALFA DENGAN PEMUPUKAN FOSFAT

    Directory of Open Access Journals (Sweden)

    - Sunarni

    2014-06-01

    Full Text Available Alfalfa (Medicago    sativa    L. as one of legume forage crops for ruminant livestock is very sensitive to the phosphorus deficiency. Phosphorus fertilizers have been used widely to overcome those problem. However, the high cost of superphosphate (SP is now focusing attention on cheaper rock phosphate (RP fertilizer. A field experiment was conducted on a latosolic soil (low pH, and low available Bray II extractable P. The objective of the research is to evaluate the effect of phosphorus fertilizer from difference sources on dry matter production, and in    vitro dry matter digestibility of alfalfa. Completely randomized block design with 7 treatments in 3 replicates was used in this field experiment. The treatments were T0 (control, T1 (SP, 100 kg P2O5/ha, T2 (SP, 200 kg P2O5/ha, T3 (SP, 300 kg P2O5/ha, T4 (RP, 100 kg P2O5/ha, T5 (RP, 200 kg P2O5/ha, T6 (RP, 300 kg P2O5/ha. Size of each plot was 2 m x 2 m, and fertilized with P fertilizer (SP, RP according to the assigned treatment. All plot received basal fertilizer of urea (50 kg N/ha, KCl (100 kg K2O/ha and poultry manure (2 ton/ha. Medicago    sativa was defoliated on 12 weeks after planting and analyzed for dry matter (DM production and in    vitro DM digestibility. Result showed that DM production significantly influenced by the treatments. Superphosphate fertilization resulted DM production significantly higher compared to control and RP, except on RP 300 kg P2O5/ha was non-significant difference. In    vitro dry matter digestibility (IVDMD of alfalfa was not affected by the treatment. There was non-significant difference in IVDMD between the treatments. Therefore, RP (300 kg P2O5/ha could replace SP to increased DM production and not affected for IVDMD of Medicago    sativa in acid latosolic soil.

  7. Effects of chlorpyrifos and chlorantraniliprole on fermentation quality of alfalfa (Medicago sativa L.) silage inoculated with or without Lactobacillus plantarum LP.

    Science.gov (United States)

    Zhang, Qing; Yu, Zhu; Wang, Xianguo; Na, Risu

    2017-03-01

    The effects of pesticides and Lactobacillus plantarum (LP) on fermentation quality of alfalfa (Medicago sativa L.) silage were investigated. Chlorpyrifos and chlorantraniliprole were sprayed on the surface of alfalfa plants at 658.6 and 45.0 g active ingredient/ha, respectively. Alfalfa plants were harvested on day 5 post-application and ensiled with or without LP. Chlorpyrifos and chlorantraniliprole decreased the yeast count of alfalfa material (P alfalfa silage (P alfalfa silage treated with pesticides (P alfalfa silage (P alfalfa silage and affected the fermentation process, whereas LP improved the fermentation quality of pesticides-contaminated alfalfa silage and slowed down the dissipation of chlorpyrifos.

  8. Automatic meta-data collection of STP observation data

    Science.gov (United States)

    Ishikura, S.; Kimura, E.; Murata, K.; Kubo, T.; Shinohara, I.

    2006-12-01

    For the geo-science and the STP (Solar-Terrestrial Physics) studies, various observations have been done by satellites and ground-based observatories up to now. These data are saved and managed at many organizations, but no common procedure and rule to provide and/or share these data files. Researchers have felt difficulty in searching and analyzing such different types of data distributed over the Internet. To support such cross-over analyses of observation data, we have developed the STARS (Solar-Terrestrial data Analysis and Reference System). The STARS consists of client application (STARS-app), the meta-database (STARS- DB), the portal Web service (STARS-WS) and the download agent Web service (STARS DLAgent-WS). The STARS-DB includes directory information, access permission, protocol information to retrieve data files, hierarchy information of mission/team/data and user information. Users of the STARS are able to download observation data files without knowing locations of the files by using the STARS-DB. We have implemented the Portal-WS to retrieve meta-data from the meta-database. One reason we use the Web service is to overcome a variety of firewall restrictions which is getting stricter in recent years. Now it is difficult for the STARS client application to access to the STARS-DB by sending SQL query to obtain meta- data from the STARS-DB. Using the Web service, we succeeded in placing the STARS-DB behind the Portal- WS and prevent from exposing it on the Internet. The STARS accesses to the Portal-WS by sending the SOAP (Simple Object Access Protocol) request over HTTP. Meta-data is received as a SOAP Response. The STARS DLAgent-WS provides clients with data files downloaded from data sites. The data files are provided with a variety of protocols (e.g., FTP, HTTP, FTPS and SFTP). These protocols are individually selected at each site. The clients send a SOAP request with download request messages and receive observation data files as a SOAP Response with

  9. Metadata distribution algorithm based on directory hash in mass storage system

    Science.gov (United States)

    Wu, Wei; Luo, Dong-jian; Pei, Can-hao

    2008-12-01

    The distribution of metadata is very important in mass storage system. Many storage systems use subtree partition or hash algorithm to distribute the metadata among metadata server cluster. Although the system access performance is improved, the scalability problem is remarkable in most of these algorithms. This paper proposes a new directory hash (DH) algorithm. It treats directory as hash key value, implements a concentrated storage of metadata, and take a dynamic load balance strategy. It improves the efficiency of metadata distribution and access in mass storage system by hashing to directory and placing metadata together with directory granularity. DH algorithm has solved the scalable problems existing in file hash algorithm such as changing directory name or permission, adding or removing MDS from the cluster, and so on. DH algorithm reduces the additional request amount and the scale of each data migration in scalable operations. It enhances the scalability of mass storage system remarkably.

  10. Mezclas de Alfalfa y Gramíneas en la Serie Sabana de Bogotá Tipo Franco Arcilloso.

    Directory of Open Access Journals (Sweden)

    Chaverra Gil. Hernán

    1960-06-01

    Full Text Available En el Centro Nacional de Investigaciones Agrícolas, Tibaitatá, y en la serie de suelos Sabana de Bogotá, tipo frnaco arcilloso, se llevaron a cabo dos experimentos con mezclas de alfalfa y gramíneas. En el primer ensayo, se sembraron simultáneamente con la alfalfa, ryegrass inglés, rygrass anual y orchoso. Los métodos de siembra utilizados fueron: a alfalfa y gramíneas sembradas al voleo, b alfalfa y gramíneas en el mismo surco, c alfalfa y gramíneas en surcos alternos, d alfalfa en surcos y gramíneas al voleo y e alfalfa en surcos y trébol blanco al voleo. En el segundo experimento se sembró la alfalfa en surcos separados 25 cm. Después de establecida la alfalfa e inmediatamente después del 4° corte se sembraron al voleo las siguientes gramíneas: ryegrass inglés, rygrass anual, orchoro, festuca media, pasto cinta y pasto rescate. Las finalidades del estudio fueron las de valorar el comportamiento de las gramíneas en mezcla con la alfalfa, mediante la determinación progresiva de la composición botánica y el rendimiento de forraje seco de las mezclas. La siembra simultánea de ryegrass inglés y ryegrass anual con la alfalfa dio como resultado una mala población de la leguminosa, especialmente en los dos primeros cortes. La competencia ejercida por estas dos gramíneas a la alfalfa, se redujo casi completamente, cuando se sembraron en surcos alternos o en la alfalfa establecida. Sea cual fuere el pasto sembrado, la siembra de gramíneas en alfalfa establecida, redujo la competencia entre los pastos asociados. En este ensayo el factor más importante en el establecimiento de las gramíneas, fue el agua disponible en el suelo. Bajo las condiciones del primer experimento el orchoro fue la gramínea que mejor creció en asocio de la alfalfa en todos los métodos de siembra estudiado. La producción promedia de la mezcla varió entre 2600 y 3145 Kg/hect. De forreje seco por corte y la proporción de orchoro entre

  11. Phosphate Rock Application on Alfalfa (Medicago sativa L. Production and Macronutrients in Latosol Soil

    Directory of Open Access Journals (Sweden)

    Y. Liani

    2011-12-01

    Full Text Available The objective of this study was to evaluate the effectiveness of phosphate rocks (PRs fertilizer compared to chemical P fertilizer for the best crop production and macronutrients of alfalfa. A completely randomized design under 3x3 factorial patterns was used in this research. The first factor was different sources of P fertilizer: Guizhou Phosphate Rock (GPR, Jingxiang Phosphate Rock (JPR, and Single Super Phosphate (SSP. The second factor was level of P fertilizer: 75, 100, and 125 mg P2O5/kg soil. A control treatment (without addition of P fertilizer, CK was added as a comparison with the treatments. The results showed that JPR was the best for alfalfa production, whereas GPR and SSP were better for nutrient content in the alfalfa tissue than JPR. On the whole, phosphate rocks had similar effect on alfalfa growth compared to SSP at the experimental conditions.

  12. Dr. Hadoop:an infinite scalable metadata management for Hadoop-How the baby elephant becomes immortal

    Institute of Scientific and Technical Information of China (English)

    Dipayan DEV‡; Ripon PATGIRI

    2016-01-01

    In this Exa byte scale era, data increases at an exponential rate. This is in turn generating a massive amount of metadata in the fi le system. Hadoop is the most widely used framework to deal with big data. Due to this growth of huge amount of metadata, however, the efficiency of Hadoop is questioned numerous times by many researchers. Therefore, it is essential to create an efficient and scalable metadata management for Hadoop. Hash-based mapping and subtree partitioning are suitable in distributed metadata management schemes. Subtree partitioning does not uniformly distribute workload among the metadata servers, and metadata needs to be migrated to keep the load roughly balanced. Hash-based mapping suffers from a constraint on the locality of metadata, though it uniformly distributes the load among NameNodes, which are the metadata servers of Hadoop. In this paper, we present a circular metadata management mechanism named dynamic circular metadata splitting (DCMS). DCMS preserves metadata locality using consistent hashing and locality-preserving hashing, keeps replicated metadata for excellent reliability, and dynamically distributes metadata among the NameNodes to keep load balancing. NameNode is a centralized heart of the Hadoop. Keeping the directory tree of all fi les, failure of which causes the single point of failure (SPOF). DCMS removes Hadoop’s SPOF and provides an efficient and scalable metadata management. The new framework is named‘Dr. Hadoop’ after the name of the authors.

  13. A Common Data Model for Meta-Data in Interoperable Environments

    OpenAIRE

    Macfarlane, A; McCann, J. A.; Liddell, H

    1996-01-01

    A Common Data Model is a unifying structure used to allow heterogeneous environments to interoperate. An Object Oriented common model is presented in this paper, which provides this unifying structure for a Meta-Data Repository Visualisation Tool. The creation of this common model from the Meta-Data held in component databases is described. The role this common model has in interoperable environments is discussed, and the physical architecture created from the examination of the Meta-Data in ...

  14. HI Gas in Early Type Galaxies as Measured by ALFALFA

    Science.gov (United States)

    Collins, Wendy; Morrison, Ryan; Green, Jarred; Raskin, Mark; Crawford, Connor; Bomer-Lawson, August; Hannan, Joshua; Crone-Odekon, Mary; ALFALFA Team

    2016-01-01

    We present the HI content of 1580 early type galaxies (ETGs) in a total sample of 7747 galaxies that have HI measurements or upper limits from the ALFALFA survey. We find a significant correlation between HI content and local density, with HI detections almost exclusively in low-density environments. Using optical line ratios, we split the population into galaxies with spectral lines dominated by active galactic nuclei (AGN) and dominated by star forming regions. Compared with HI-rich star forming ETGs, HI-rich ETGs with AGN tend to be brighter and redder and to exhibit a stronger correlation between stellar mass and HI mass. This work is supported by NSF grant AST-1211005.

  15. Role of Silicon Counteracting Cadmium Toxicity in Alfalfa (Medicago sativa L.).

    Science.gov (United States)

    Kabir, Ahmad H; Hossain, Mohammad M; Khatun, Most A; Mandal, Abul; Haider, Syed A

    2016-01-01

    Cadmium (Cd) is one of the most phytotoxic elements causing an agricultural problem and human health hazards. This work investigates whether and how silicon (Si) ameliorates Cd toxicity in Alfalfa. The addition of Si in Cd-stressed plants caused significant improvement in morpho-physiological features as well as total protein and membrane stability, indicating that Si does have critical roles in Cd detoxification in Alfalfa. Furthermore, Si supplementation in Cd-stressed plants showed a significant decrease in Cd and Fe concentrations in both roots and shoots compared with Cd-stressed plants, revealing that Si-mediated tolerance to Cd stress is associated with Cd inhibition in Alfalfa. Results also showed no significant changes in the expression of two metal chelators [MsPCS1 (phytochelatin synthase) and MsMT2 (metallothionein)] and PC (phytochelatin) accumulation, indicating that there may be no metal sequestration or change in metal sequestration following Si application under Cd stress in Alfalfa. We further performed a targeted study on the effect of Si on Fe uptake mechanisms. We observed the consistent reduction in Fe reductase activity, expression of Fe-related genes [MsIRT1 (Fe transporter), MsNramp1 (metal transporter) and OsFRO1 (ferric chelate reductase] and Fe chelators (citrate and malate) by Si application to Cd stress in roots of Alfalfa. These results support that limiting Fe uptake through the down-regulation of Fe acquisition mechanisms confers Si-mediated alleviation of Cd toxicity in Alfalfa. Finally, an increase of catalase, ascorbate peroxidase, and superoxide dismutase activities along with elevated methionine and proline subjected to Si application might play roles, at least in part, to reduce H2O2 and to provide antioxidant defense against Cd stress in Alfalfa. The study shows evidence of the effect of Si on alleviating Cd toxicity in Alfalfa and can be further extended for phytoremediation of Cd toxicity in plants.

  16. HI Gas in Large-Scale Filaments as Measured by ALFALFA

    Science.gov (United States)

    Elliott, Skye; Phi, An; Shah, Ebrahim; Livecchi, Jack; Yu, Yang; Gengras, Graeme; Wolfe, Pierre-Francois; Crone-Odekon, Mary; Hyman, Mario; ALFALFA Team

    2016-01-01

    We assess the relationship between galaxy environment and HI content as measured by ALFALFA. In particular, we consider membership in large-scale filaments in order to provide clues to how star formation in galaxies is quenched in different environments. We use data from the Sloan Digital Sky Survey to define galaxy environments in terms of clusters, filaments, and voids for a sample of galaxies with z ALFALFA. This work is supported by NSF grant AST-1211005.

  17. Proteomic Identification of Differentially Expressed Proteins during Alfalfa (Medicago sativa L.) Flower Development.

    Science.gov (United States)

    Chen, Lingling; Chen, Quanzhu; Zhu, Yanqiao; Hou, Longyu; Mao, Peisheng

    2016-01-01

    Flower development, pollination, and fertilization are important stages in the sexual reproduction process of plants; they are also critical steps in the control of seed formation and development. During alfalfa (Medicago sativa L.) seed production, some distinct phenomena such as a low seed setting ratio, serious flower falling, and seed abortion commonly occur. However, the causes of these phenomena are complicated and largely unknown. An understanding of the mechanisms that regulate alfalfa flowering is important in order to increase seed yield. Hence, proteomic technology was used to analyze changes in protein expression during the stages of alfalfa flower development. Flower samples were collected at pre-pollination (S1), pollination (S2), and the post-pollination senescence period (S3). Twenty-four differentially expressed proteins were successfully identified, including 17 down-regulated in pollinated flowers, one up-regulated in pollinated and senesced flowers, and six up-regulated in senesced flowers. The largest proportions of the identified proteins were involved in metabolism, signal transduction, defense response, oxidation reduction, cell death, and programmed cell death (PCD). Their expression profiles demonstrated that energy metabolism, carbohydrate metabolism, and amino acid metabolism provided the nutrient foundation for pollination in alfalfa. Furthermore, there were three proteins involved in multiple metabolic pathways: dual specificity kinase splA-like protein (kinase splALs), carbonic anhydrase, and NADPH: quinone oxidoreductase-like protein. Expression patterns of these proteins indicated that MAPK cascades regulated multiple processes, such as signal transduction, stress response, and cell death. PCD also played an important role in the alfalfa flower developmental process, and regulated both pollination and flower senescence. The current study sheds some light on protein expression profiles during alfalfa flower development and

  18. Role of Silicon Counteracting Cadmium Toxicity in Alfalfa (Medicago sativa L.)

    Science.gov (United States)

    Kabir, Ahmad H.; Hossain, Mohammad M.; Khatun, Most A.; Mandal, Abul; Haider, Syed A.

    2016-01-01

    Cadmium (Cd) is one of the most phytotoxic elements causing an agricultural problem and human health hazards. This work investigates whether and how silicon (Si) ameliorates Cd toxicity in Alfalfa. The addition of Si in Cd-stressed plants caused significant improvement in morpho-physiological features as well as total protein and membrane stability, indicating that Si does have critical roles in Cd detoxification in Alfalfa. Furthermore, Si supplementation in Cd-stressed plants showed a significant decrease in Cd and Fe concentrations in both roots and shoots compared with Cd-stressed plants, revealing that Si-mediated tolerance to Cd stress is associated with Cd inhibition in Alfalfa. Results also showed no significant changes in the expression of two metal chelators [MsPCS1 (phytochelatin synthase) and MsMT2 (metallothionein)] and PC (phytochelatin) accumulation, indicating that there may be no metal sequestration or change in metal sequestration following Si application under Cd stress in Alfalfa. We further performed a targeted study on the effect of Si on Fe uptake mechanisms. We observed the consistent reduction in Fe reductase activity, expression of Fe-related genes [MsIRT1 (Fe transporter), MsNramp1 (metal transporter) and OsFRO1 (ferric chelate reductase] and Fe chelators (citrate and malate) by Si application to Cd stress in roots of Alfalfa. These results support that limiting Fe uptake through the down-regulation of Fe acquisition mechanisms confers Si-mediated alleviation of Cd toxicity in Alfalfa. Finally, an increase of catalase, ascorbate peroxidase, and superoxide dismutase activities along with elevated methionine and proline subjected to Si application might play roles, at least in part, to reduce H2O2 and to provide antioxidant defense against Cd stress in Alfalfa. The study shows evidence of the effect of Si on alleviating Cd toxicity in Alfalfa and can be further extended for phytoremediation of Cd toxicity in plants. PMID:27512401

  19. Role of silicon counteracting cadmium toxicity in Alfalfa (Medicago sativa L.

    Directory of Open Access Journals (Sweden)

    Ahmad H. Kabir

    2016-07-01

    Full Text Available Cadmium (Cd is one of the most phytotoxic elements causing an agricultural problem and human health hazards. This work investigates whether and how silicon (Si ameliorates Cd toxicity in Alfalfa. The addition of Si in Cd-stressed plants caused significant improvement in morpho-physiological features as well as total protein and membrane stability, indicating that Si does have critical roles in Cd detoxification in Alfalfa. Furthermore, Si supplementation in Cd-stressed plants showed a significant decrease in Cd and Fe concentrations in both roots and shoots compared with Cd-stressed plants, revealing that Si-mediated tolerance to Cd stress is associated with Cd inhibition in Alfalfa. Results also showed no significant changes in the expression of two metal chelators [MsPCS1 (phytochelatin synthase and MsMT2 (metallothionein] and PC (phytochelatin accumulation, indicating that there may be no metal sequestration or change in metal sequestration following Si application under Cd stress in Alfalfa. We further performed a targeted study on the effect of Si on Fe uptake mechanisms. We observed the consistent reduction in Fe reductase activity, expression of Fe-related genes [MsIRT1 (Fe transporter, MsNramp1 (metal transporter and OsFRO1 (ferric chelate reductase] and Fe chelators (citrate and malate by Si application to Cd stress in roots of Alfalfa. These results support that limiting Fe uptake through the down-regulation of Fe acquisition mechanisms confers Si-mediated alleviation of Cd toxicity in Alfalfa. Finally, an increase of catalase (CAT, ascorbate peroxidase (APX and superoxide dismutase (SOD activities along with elevated methionine and proline subjected to Si application might play roles, at least in part, to reduce H2O2 and to provide antioxidant defense against Cd stress in Alfalfa. The study shows evidence of the effect of Si on alleviating Cd toxicity in Alfalfa and can be further extended for phytoremediation of Cd toxicity in plants.

  20. Proteomic Identification of Differentially Expressed Proteins during Alfalfa (Medicago sativa L.) Flower Development

    Science.gov (United States)

    Chen, Lingling; Chen, Quanzhu; Zhu, Yanqiao; Hou, Longyu; Mao, Peisheng

    2016-01-01

    Flower development, pollination, and fertilization are important stages in the sexual reproduction process of plants; they are also critical steps in the control of seed formation and development. During alfalfa (Medicago sativa L.) seed production, some distinct phenomena such as a low seed setting ratio, serious flower falling, and seed abortion commonly occur. However, the causes of these phenomena are complicated and largely unknown. An understanding of the mechanisms that regulate alfalfa flowering is important in order to increase seed yield. Hence, proteomic technology was used to analyze changes in protein expression during the stages of alfalfa flower development. Flower samples were collected at pre-pollination (S1), pollination (S2), and the post-pollination senescence period (S3). Twenty-four differentially expressed proteins were successfully identified, including 17 down-regulated in pollinated flowers, one up-regulated in pollinated and senesced flowers, and six up-regulated in senesced flowers. The largest proportions of the identified proteins were involved in metabolism, signal transduction, defense response, oxidation reduction, cell death, and programmed cell death (PCD). Their expression profiles demonstrated that energy metabolism, carbohydrate metabolism, and amino acid metabolism provided the nutrient foundation for pollination in alfalfa. Furthermore, there were three proteins involved in multiple metabolic pathways: dual specificity kinase splA-like protein (kinase splALs), carbonic anhydrase, and NADPH: quinone oxidoreductase-like protein. Expression patterns of these proteins indicated that MAPK cascades regulated multiple processes, such as signal transduction, stress response, and cell death. PCD also played an important role in the alfalfa flower developmental process, and regulated both pollination and flower senescence. The current study sheds some light on protein expression profiles during alfalfa flower development and

  1. Proteomic identification of differentially expressed proteins during alfalfa (Medicago sativa L. flower development

    Directory of Open Access Journals (Sweden)

    Lingling Chen

    2016-10-01

    Full Text Available Flower development, pollination, and fertilization are important stages in the sexual reproduction process of plants; they are also critical steps in the control of seed formation and development. During alfalfa (Medicago sativa L. seed production, some distinct phenomena such as a low seed setting ratio, serious flower falling, and seed abortion commonly occur. However, the causes of these phenomena are complicated and largely unknown. An understanding of the mechanisms that regulate alfalfa flowering is important in order to increase seed yield. Hence, proteomic technology was used to analyze changes in protein expression during the stages of alfalfa flower development. Flower samples were collected at pre-pollination (S1, pollination (S2, and the post-pollination senescence period (S3. Twenty-four differentially expressed proteins were successfully identified, including 17 down-regulated in pollinated flowers, one up-regulated in pollinated and senesced flowers, and six up-regulated in senesced flowers. The largest proportions of the identified proteins were involved in metabolism, signal transduction, defense response, oxidation reduction, cell death, and programmed cell death (PCD. Their expression profiles demonstrated that energy metabolism, carbohydrate metabolism, and amino acid metabolism provided the nutrient foundation for pollination in alfalfa. Furthermore, there were three proteins involved in multiple metabolic pathways: dual specificity kinase splA-like protein (kinase splALs, carbonic anhydrase (CA, and NADPH: quinone oxidoreductase-like protein (NQOLs. Expression patterns of these proteins indicated that MAPK cascades regulated multiple processes, such as signal transduction, stress response, and cell death. PCD also played an important role in the alfalfa flower developmental process, and regulated both pollination and flower senescence. The current study sheds some light on protein expression profiles during alfalfa flower

  2. Metadata: Standards for Retrieving WWW Documents (and Other Digitized and Non-Digitized Resources)

    Science.gov (United States)

    Rusch-Feja, Diann

    The use of metadata for indexing digitized and non-digitized resources for resource discovery in a networked environment is being increasingly implemented all over the world. Greater precision is achieved using metadata than relying on universal search engines and furthermore, meta-data can be used as filtering mechanisms for search results. An overview of various metadata sets is given, followed by a more focussed presentation of Dublin Core Metadata including examples of sub-elements and qualifiers. Especially the use of the Dublin Core Relation element provides connections between the metadata of various related electronic resources, as well as the metadata for physical, non-digitized resources. This facilitates more comprehensive search results without losing precision and brings together different genres of information which would otherwise be only searchable in separate databases. Furthermore, the advantages of Dublin Core Metadata in comparison with library cataloging and the use of universal search engines are discussed briefly, followed by a listing of types of implementation of Dublin Core Metadata.

  3. A Shared Infrastructure for Federated Search Across Distributed Scientific Metadata Catalogs

    Science.gov (United States)

    Reed, S. A.; Truslove, I.; Billingsley, B. W.; Grauch, A.; Harper, D.; Kovarik, J.; Lopez, L.; Liu, M.; Brandt, M.

    2013-12-01

    The vast amount of science metadata can be overwhelming and highly complex. Comprehensive analysis and sharing of metadata is difficult since institutions often publish to their own repositories. There are many disjoint standards used for publishing scientific data, making it difficult to discover and share information from different sources. Services that publish metadata catalogs often have different protocols, formats, and semantics. The research community is limited by the exclusivity of separate metadata catalogs and thus it is desirable to have federated search interfaces capable of unified search queries across multiple sources. Aggregation of metadata catalogs also enables users to critique metadata more rigorously. With these motivations in mind, the National Snow and Ice Data Center (NSIDC) and Advanced Cooperative Arctic Data and Information Service (ACADIS) implemented two search interfaces for the community. Both the NSIDC Search and ACADIS Arctic Data Explorer (ADE) use a common infrastructure which keeps maintenance costs low. The search clients are designed to make OpenSearch requests against Solr, an Open Source search platform. Solr applies indexes to specific fields of the metadata which in this instance optimizes queries containing keywords, spatial bounds and temporal ranges. NSIDC metadata is reused by both search interfaces but the ADE also brokers additional sources. Users can quickly find relevant metadata with minimal effort and ultimately lowers costs for research. This presentation will highlight the reuse of data and code between NSIDC and ACADIS, discuss challenges and milestones for each project, and will identify creation and use of Open Source libraries.

  4. The Theory and Implementation for Metadata in Digital Library/Museum

    Directory of Open Access Journals (Sweden)

    Hsueh-hua Chen

    1998-12-01

    Full Text Available Digital Libraries and Museums (DL/M have become one of the important research issues of Library and Information Science as well as other related fields. This paper describes the basic concepts of DL/M and briefly introduces the development of Taiwan Digital Museum Project. Based on the features of various collections, wediscuss how to maintain, to manage and to exchange metadata, especially from the viewpoint of users. We propose the draft of metadata, MICI (Metadata Interchange for Chinese Information , developed by ROSS (Resources Organization and SearchingSpecification team. Finally, current problems and future development of metadata will be touched.[Article content in Chinese

  5. Studies of Big Data metadata segmentation between relational and non-relational databases

    CERN Document Server

    Golosova, M V; Klimentov, A A; Ryabinkin, E A; Dimitrov, G; Potekhin, M

    2015-01-01

    In recent years the concepts of Big Data became well established in IT. Systems managing large data volumes produce metadata that describe data and workflows. These metadata are used to obtain information about current system state and for statistical and trend analysis of the processes these systems drive. Over the time the amount of the stored metadata can grow dramatically. In this article we present our studies to demonstrate how metadata storage scalability and performance can be improved by using hybrid RDBMS/NoSQL architecture.

  6. Studies of Big Data metadata segmentation between relational and non-relational databases

    Science.gov (United States)

    Golosova, M. V.; Grigorieva, M. A.; Klimentov, A. A.; Ryabinkin, E. A.; Dimitrov, G.; Potekhin, M.

    2015-12-01

    In recent years the concepts of Big Data became well established in IT. Systems managing large data volumes produce metadata that describe data and workflows. These metadata are used to obtain information about current system state and for statistical and trend analysis of the processes these systems drive. Over the time the amount of the stored metadata can grow dramatically. In this article we present our studies to demonstrate how metadata storage scalability and performance can be improved by using hybrid RDBMS/NoSQL architecture.

  7. The HI Content of Groups as Measured by ALFALFA

    Science.gov (United States)

    Koopmann, Rebecca A.; Crone-Odekon, Mary; Haynes, Martha P.; Finn, Rose; Hallenbeck, Gregory L.; Giovanelli, Riccardo; ALFALFA Team

    2016-01-01

    We present the HI content of galaxies in nearby groups and clusters as measured by the 70% complete Arecibo Legacy Fast-ALFA (ALFALFA) survey, including constraints from ALFALFA detection limits. Our sample includes 22 groups at distances between 70-160 Mpc over the mass range 12.5 < log M/M⊙ < 15.0, for a total of 1986 late-type galaxies out to a projected group-centric distance of 4.0 Mpc. We find that late-type galaxies in the centers of groups lack HI at fixed stellar mass relative to the regions surrounding them. Larger groups show evidence of a stronger gradient in HI properties, despite a similar gradient in stellar mass, and in color at fixed stellar mass, over the same range in r/R200. We compare several environment variables to determine which is the best predictor of galaxy properties; group-centric distance r and r/R200 are similarly effective predictors, while local density is slightly more effective and group size and halo mass are slightly less effective. Finally, we see evidence that HI is deficient for blue cloud galaxies in denser environments even when both stellar mass and color are fixed. This is consistent with a picture where HI is removed or destroyed, followed by reddening within the blue cloud. Overall, our results support the existence of pre-processing in isolated groups, along with an additional rapid mechanism for gas removal within larger groups and clusters, perhaps by ram-pressure stripping. This work has been supported by NSF grants AST-0724918/0902211, AST-075267/0903394, AST-0725380, and AST-1211005.

  8. ALFALFA Hα Reveals How Galaxies Use Their Hi Fuel

    Science.gov (United States)

    Jaskot, Anne; Oey, Sally; Salzer, John; van Sistine, Angie; Bell, Eric; Haynes, Martha

    Atomic hydrogen traces the raw material from which molecular clouds and stars form. With 565 galaxies from the ALFALFA Hα survey, a statistically complete subset of the ALFALFA survey, we examine the processes that affect galaxies' abilities to access and consume their Hi gas. On galaxy-wide scales, Hi gas fractions correlate only weakly with instantaneous specific star formation rates (sSFRs) but tightly with galaxy color. We show that a connection between dust and Hi content, arising from the fundamental mass-metallicity-Hi relation, leads to this tight color correlation. We find that disk galaxies follow a relation between stellar surface density and Hi depletion time, consistent with a scenario in which higher mid-plane pressure leads to more efficient molecular cloud formation from Hi. In contrast, spheroids show no such trend. Starbursts, identified by Hα equivalent width, do not show enhanced Hi gas fractions relative to similar mass non-starburst galaxies. The starbursts' shorter Hi depletion times indicate more efficient consumption of Hi, and galaxy interactions drive this enhanced star formation efficiency in several starbursts. Interestingly, the most disturbed starbursts show greater enhancements in Hi gas fraction, which may indicate an excess of Hi at early merger stages. At low galaxy stellar masses, the triggering mechanism for starbursts is less clear; the high scatter in efficiency and sSFR among low-mass galaxies may result from periodic bursts. We find no evidence for depleted Hi reservoirs in starbursts, which suggests that galaxies may maintain sufficient Hi to fuel multiple starburst episodes.

  9. Alimentos funcionales, alfalfa y fitoestrógenos

    Directory of Open Access Journals (Sweden)

    Alejandro De Jesús

    2016-05-01

    Full Text Available El desarrollo de alimentos funcionales en los últimos años ha ido en aumento debido principalmente, al interés de la población por alimentos que no solo cumplan con la función nutricional sino también por que tengan un efecto benéfico en salud reduciendo así el riesgo a padecer diversas enfermedades. La alfalfa ha sido generalmente un alimento destinado para la alimentación del ganado, sin embargo, en diversas investigaciones alrededor del mundo se ha reportado que contiene compuestos bioactivos –fitoquímicos– y proteínas con efecto estrogénico, antimicrobiano y antioxidante, así como también protector contra enfermedades cardiovasculares, cáncer y diabetes, entre otras, clasificándola potencialmente como un alimento funcional. El presente documento tiene como objetivo dar un bosquejo general informativo a través de la búsqueda y revisión bibliográfica acerca de los alimentos funcionales y en especial de la alfalfa y constituyentes fitoquímicos (fitoestrógenos que la ubican dentro de este grupo de alimentos; así como los hallazgos que se han reportado como efectos adversos en animales experimentales específicamente en el aparato reproductivo debido al consumo de este tipo de fitocompuestos. Esta dicotomía entre los efectos adversos y benéficos no es más que la señalización de que aún falta mucha más información y estudios que realizar respecto al resultado que pueden tener los fitoestrógenos en el desarrollo y función reproductiva de animales, el agonismo y antagonismo de su efecto así como la concordancia en el riesgo-beneficio de su consumo.

  10. Salt stress alters DNA methylation levels in alfalfa (Medicago spp).

    Science.gov (United States)

    Al-Lawati, A; Al-Bahry, S; Victor, R; Al-Lawati, A H; Yaish, M W

    2016-02-26

    Modification of DNA methylation status is one of the mechanisms used by plants to adjust gene expression at both the transcriptional and posttranscriptional levels when plants are exposed to suboptimal conditions. Under abiotic stress, different cultivars often show heritable phenotypic variation accompanied by epigenetic polymorphisms at the DNA methylation level. This variation may provide the raw materials for plant breeding programs that aim to enhance abiotic stress tolerance, including salt tolerance. In this study, methylation-sensitive amplified polymorphism (MSAP) analysis was used to assess cytosine methylation levels in alfalfa (Medicago spp) roots exposed to increasing NaCl concentrations (0.0, 8.0, 12.0, and 20.0 dS/m). Eleven indigenous landraces were analyzed, in addition to a salt-tolerant cultivar that was used as a control. There was a slight increase in DNA methylation upon exposure to high levels of soil salinity. Phylogenetic analysis using MSAP showed epigenetic variation within and between the alfalfa landraces when exposed to saline conditions. Based on MSAP and enzyme-linked immunosorbent assay results, we found that salinity increased global DNA methylation status, particularly in plants exposed to the highest level of salinity (20 dS/m). Quantitative reverse transcription-polymerase chain reaction indicated that this might be mediated by the overexpression of methyltransferase homolog genes after exposure to saline conditions. DNA demethylation using 5-azacytidine reduced seedling lengths and dry and fresh weights, indicating a possible decrease in salinity tolerance. These results suggest that salinity affects DNA methylation flexibility.

  11. Western Sufism

    DEFF Research Database (Denmark)

    Sedgwick, Mark

    Western Sufism is sometimes dismissed as a relatively recent "new age" phenomenon, but in this book, Mark Sedgwick argues that it actually has very deep roots, both in the Muslim world and in the West. In fact, although the first significant Western Sufi organization was not established until 1915......, of thought both familiar and less familiar: Neoplatonic emanationism, perennialism, pantheism, universalism, and esotericism. Western Sufism, then, is the product not of the new age but of Islam, the ancient world, and centuries of Western religious and intellectual history. Drawing on sources from antiquity...... origins in repeated intercultural transfers from the Muslim world to the West, in the thought of the European Renaissance and Enlightenment, and in the intellectual and religious ferment of the nineteenth century. He then follows the development of organized Sufism in the West from 1915 until 1968...

  12. [Determination of Hard Rate of Alfalfa (Medicago sativa L.) Seeds with Near Infrared Spectroscopy].

    Science.gov (United States)

    Wang, Xin-xun; Chen, Ling-ling; Zhang, Yun-wei; Mao, Pei-sheng

    2016-03-01

    Alfalfa (Medicago sativa L.) is the most commonly grown forage crop due to its better quality characteristics and high adaptability in China. However, there was 20%-80% hard seeds in alfalfa which could not be identified easily from non hard seeds which would cause the loss of seed utilization value and plant production. This experiment was designed for 121 samples of alfalfa. Seeds were collected according to different regions, harvested year and varieties. 31 samples were artificial matched as hard rates ranging from 20% to 80% to establish a model for hard seed rate by near infrared spectroscopy (NIRS) with Partial Least Square (PLS). The objective of this study was to establish a model and to estimate the efficiency of NIRS for determining hard rate of alfalfa seeds. The results showed that the correlation coefficient (R2(cal)) of calibration model was 0.981 6, root mean square error of cross validation (RMSECV) was 5.32, and the ratio of prediction to deviation (RPD) was 3.58. The forecast model in this experiment presented the satisfied precision. The proposed method using NIRS technology is feasible for identification and classification of hard seed in alfalfa. A new method, as nondestructive testing of hard seed rate, was provided to theoretical basis for fast nondestructive detection of hard seed rates in alfalfa.

  13. The Current Status, Problems, and Prospects of Alfalfa (Medicago sativa L. Breeding in China

    Directory of Open Access Journals (Sweden)

    Shangli Shi

    2017-01-01

    Full Text Available This paper reviews the current status, methodology, achievements, and prospects of alfalfa (Medicago sativa L. breeding in China. There are 77 cultivars that have been registered in the country, these include 36 cultivars bred through breeding programs, 17 introduced from overseas, 5 domesticated from wild ecotypes, and 19 through regional collection/breeding programs. Cultivars have been selected for cold resistance, disease resistance, salt tolerance, grazing tolerance, high yield, and early maturity. Most of these cultivars have been developed through conventional breeding techniques, such as selective and cross breeding, and some are now being evaluated that have been developed through the application of transgenic technology. The major problems for alfalfa breeding in China include low success rate, slow progress to breed resistant varieties, lack of breeding materials and their systematic collection, storage and evaluation, lack of advanced breeding techniques, and low adoption rate of new cultivars. There are gaps in alfalfa breeding between China and the developed world. Improvement of alfalfa breeding techniques, development of cultivars with adaptations to different regions within China, and the protection and utilization of alfalfa germplasm resources have been identified as major strategies to improve the efficiency of alfalfa breeding in China.

  14. El cultivo de alfalfa utilizando agua de perforación, agua residual urbana y precipitaciones The cultivation of alfalfa using artesian well water, urban wastewater and rainfall

    Directory of Open Access Journals (Sweden)

    José O. Plevich

    2012-12-01

    Full Text Available El objetivo de este trabajo fue analizar la producción de biomasa aérea, la eficiencia del uso de agua y el valor nutritivo de alfalfa cultivada aplicando riego con agua residual urbana, agua de perforación y un testigo (precipitaciones, en el Campus de la Universidad Nacional de Rio Cuarto (Córdoba-Argentina. Los tratamientos de riego tuvieron un efecto positivo sobre la producción de biomasa aérea obteniéndose un 24% más de producción de biomasa que en la situación de secano (precipitaciones. Entre los tratamientos con riego también se manifestaron diferencias estadísticamente significativas. La alfalfa regada con aguas residuales urbana supero en un 19% a la cultivada con agua de perforación. La eficiencia del uso del agua por parte del cultivo se incrementó cuando el riego se realizó con aguas residuales urbanas. Además, se determinó que la alfalfa regada con agua residual, supera los valores nutritivos del cultivo que crece en condiciones sin riego; encontrándose 39% más de proteínas, 14% más de digestibilidad e igual porcentaje de energía metabólica. Se puede concluir que el agua residual urbana representa otra posible fuente de agua, factible de ingresar al suelo y estar a disposición para el cultivo de alfalfa.The objective of this study was to analyse the production of alfalfa biomass, the efficiency of water use and the nutritional value of forage, inside an irrigation structure of an experimental facility that uses treated urban wastewater, artesian well water and rainfall, at the campus of the Universidad National de Rio Cuarto (Córdoba-Argentina. The irrigation treatment had a positive effect on the production of biomass of alfalfa. On an average 24% increase in production was observed when compared to dry-land farming. Regarding the quality of the irrigation water, statistical differences in production were observed, the irrigation with urban wastewater produced 19% more than that of well water. The

  15. Germinación y crecimiento de alfalfa bajo condiciones salinas Germination and growth of alfalfa under saline conditions

    Directory of Open Access Journals (Sweden)

    Sara Lucía González-Romero

    2011-02-01

    Full Text Available En México, el cultivo de la alfalfa (Medicago sativa L. se emplea para la alimentación del ganado bovino, éste cuenta con investigaciones de respuestas a estrés salino en la etapa de germinación; sin embargo, sólo se han usado diferentes niveles de NaCl o de manitol y polietilenglicol; por lo anterior, los objetivos de esta investigación fue estudiar la respuesta a la salinidad, que se presenta en zonas áridas y semiáridas de México de la alfalfa en la etapa de germinación y evaluar su efecto sobre el crecimiento de la radícula y la parte aérea. Para cumplir lo anterior, en el laboratorio de salinidad del Colegio de Postgraduados en Ciencias Agrícolas durante el 2009, las semillas se sometieron a pruebas de germinación en un diseño factorial de 11 soluciones salinas a ocho dosis (0, 2, 4, 8, 11.7, 15, 19 y 28 dS m-1 y tres repeticiones. Se observó que las sales NaHCO3 y sulfático-sódica influyeron más sobre la germinación; y las sales CaCl2 2H2O y sulfática registraron el mayor porcentaje de germinación; para el crecimiento de radícula la sal que más afectó fue el NaHCO3 y la salinidad sulfática; las sales CaCl2 2H2O y sulfático-clorhídrica permitieron mayor desarrollo. El crecimiento de la parte aérea fue más afectado en comparación al desarrollo de la radícula. La mezcla de sales favoreció el porcentaje de germinación, el crecimiento de radícula y parte aérea.In Mexico, alfalfa (Medicago sativa L. is used for feeding cattle and has been studied for responses to salt stress in the germination phase; however, only NaCl or mannitol and polyethylene glycols have been used in different levels. Due to this, the aims of this research were to study the response of alfalfa in the germination stage to the salinity of the arid and semiarid areas in Mexico, and to evaluate its effect on the growth of the radicle and aerial section. In order to achieve this, in the salinity lab of the Colegio de Postgraduados en

  16. Standardized metadata for human pathogen/vector genomic sequences.

    Directory of Open Access Journals (Sweden)

    Vivien G Dugan

    Full Text Available High throughput sequencing has accelerated the determination of genome sequences for thousands of human infectious disease pathogens and dozens of their vectors. The scale and scope of these data are enabling genotype-phenotype association studies to identify genetic determinants of pathogen virulence and drug/insecticide resistance, and phylogenetic studies to track the origin and spread of disease outbreaks. To maximize the utility of genomic sequences for these purposes, it is essential that metadata about the pathogen/vector isolate characteristics be collected and made available in organized, clear, and consistent formats. Here we report the development of the GSCID/BRC Project and Sample Application Standard, developed by representatives of the Genome Sequencing Centers for Infectious Diseases (GSCIDs, the Bioinformatics Resource Centers (BRCs for Infectious Diseases, and the U.S. National Institute of Allergy and Infectious Diseases (NIAID, part of the National Institutes of Health (NIH, informed by interactions with numerous collaborating scientists. It includes mapping to terms from other data standards initiatives, including the Genomic Standards Consortium's minimal information (MIxS and NCBI's BioSample/BioProjects checklists and the Ontology for Biomedical Investigations (OBI. The standard includes data fields about characteristics of the organism or environmental source of the specimen, spatial-temporal information about the specimen isolation event, phenotypic characteristics of the pathogen/vector isolated, and project leadership and support. By modeling metadata fields into an ontology-based semantic framework and reusing existing ontologies and minimum information checklists, the application standard can be extended to support additional project-specific data fields and integrated with other data represented with comparable standards. The use of this metadata standard by all ongoing and future GSCID sequencing projects will

  17. Scientific Workflows + Provenance = Better (Meta-)Data Management

    Science.gov (United States)

    Ludaescher, B.; Cuevas-Vicenttín, V.; Missier, P.; Dey, S.; Kianmajd, P.; Wei, Y.; Koop, D.; Chirigati, F.; Altintas, I.; Belhajjame, K.; Bowers, S.

    2013-12-01

    The origin and processing history of an artifact is known as its provenance. Data provenance is an important form of metadata that explains how a particular data product came about, e.g., how and when it was derived in a computational process, which parameter settings and input data were used, etc. Provenance information provides transparency and helps to explain and interpret data products. Other common uses and applications of provenance include quality control, data curation, result debugging, and more generally, 'reproducible science'. Scientific workflow systems (e.g. Kepler, Taverna, VisTrails, and others) provide controlled environments for developing computational pipelines with built-in provenance support. Workflow results can then be explained in terms of workflow steps, parameter settings, input data, etc. using provenance that is automatically captured by the system. Scientific workflows themselves provide a user-friendly abstraction of the computational process and are thus a form of ('prospective') provenance in their own right. The full potential of provenance information is realized when combining workflow-level information (prospective provenance) with trace-level information (retrospective provenance). To this end, the DataONE Provenance Working Group (ProvWG) has developed an extension of the W3C PROV standard, called D-PROV. Whereas PROV provides a 'least common denominator' for exchanging and integrating provenance information, D-PROV adds new 'observables' that described workflow-level information (e.g., the functional steps in a pipeline), as well as workflow-specific trace-level information ( timestamps for each workflow step executed, the inputs and outputs used, etc.) Using examples, we will demonstrate how the combination of prospective and retrospective provenance provides added value in managing scientific data. The DataONE ProvWG is also developing tools based on D-PROV that allow scientists to get more mileage from provenance metadata

  18. Evolution of the Architecture of the ATLAS Metadata Interface (AMI)

    CERN Document Server

    Odier, Jerome; The ATLAS collaboration; Fulachier, Jerome; Lambert, Fabian

    2015-01-01

    The ATLAS Metadata Interface (AMI) is now a mature application. Over the years, the number of users and the number of provided functions has dramatically increased. It is necessary to adapt the hardware infrastructure in a seamless way so that the quality of service remains high. We describe the evolution from the beginning of the application life, using one server with a MySQL backend database, to the current state in which a cluster of virtual machines on the French Tier 1 cloud at Lyon, an Oracle database also at Lyon, with replication to Oracle at CERN and a back-up server are used.

  19. Twenty-first century metadata operations challenges, opportunities, directions

    CERN Document Server

    Lee Eden, Bradford

    2014-01-01

    It has long been apparent to academic library administrators that the current technical services operations within libraries need to be redirected and refocused in terms of both format priorities and human resources. A number of developments and directions have made this reorganization imperative, many of which have been accelerated by the current economic crisis. All of the chapters detail some aspect of technical services reorganization due to downsizing and/or reallocation of human resources, retooling professional and support staff in higher level duties and/or non-MARC metadata, ""value-a

  20. Technical Evaluation Report 40: The International Learning Object Metadata Survey

    Directory of Open Access Journals (Sweden)

    Norm Friesen

    2004-11-01

    Full Text Available A wide range of projects and organizations is currently making digital learning resources (learning objects available to instructors, students, and designers via systematic, standards-based infrastructures. One standard that is central to many of these efforts and infrastructures is known as Learning Object Metadata (IEEE 1484.12.1-2002, or LOM. This report builds on Report #11 in this series, and discusses the findings of the author's recent study of ways in which the LOM standard is being used internationally.

  1. A Metadata based Knowledge Discovery Methodology for Seeding Translational Research.

    Science.gov (United States)

    Kothari, Cartik R; Payne, Philip R O

    2015-01-01

    In this paper, we present a semantic, metadata based knowledge discovery methodology for identifying teams of researchers from diverse backgrounds who can collaborate on interdisciplinary research projects: projects in areas that have been identified as high-impact areas at The Ohio State University. This methodology involves the semantic annotation of keywords and the postulation of semantic metrics to improve the efficiency of the path exploration algorithm as well as to rank the results. Results indicate that our methodology can discover groups of experts from diverse areas who can collaborate on translational research projects.

  2. Generation of Multiple Metadata Formats from a Geospatial Data Repository

    Science.gov (United States)

    Hudspeth, W. B.; Benedict, K. K.; Scott, S.

    2012-12-01

    The Earth Data Analysis Center (EDAC) at the University of New Mexico is partnering with the CYBERShARE and Environmental Health Group from the Center for Environmental Resource Management (CERM), located at the University of Texas, El Paso (UTEP), the Biodiversity Institute at the University of Kansas (KU), and the New Mexico Geo- Epidemiology Research Network (GERN) to provide a technical infrastructure that enables investigation of a variety of climate-driven human/environmental systems. Two significant goals of this NASA-funded project are: a) to increase the use of NASA Earth observational data at EDAC by various modeling communities through enabling better discovery, access, and use of relevant information, and b) to expose these communities to the benefits of provenance for improving understanding and usability of heterogeneous data sources and derived model products. To realize these goals, EDAC has leveraged the core capabilities of its Geographic Storage, Transformation, and Retrieval Engine (Gstore) platform, developed with support of the NSF EPSCoR Program. The Gstore geospatial services platform provides general purpose web services based upon the REST service model, and is capable of data discovery, access, and publication functions, metadata delivery functions, data transformation, and auto-generated OGC services for those data products that can support those services. Central to the NASA ACCESS project is the delivery of geospatial metadata in a variety of formats, including ISO 19115-2/19139, FGDC CSDGM, and the Proof Markup Language (PML). This presentation details the extraction and persistence of relevant metadata in the Gstore data store, and their transformation into multiple metadata formats that are increasingly utilized by the geospatial community to document not only core library catalog elements (e.g. title, abstract, publication data, geographic extent, projection information, and database elements), but also the processing steps used to

  3. openPDS: protecting the privacy of metadata through SafeAnswers.

    Science.gov (United States)

    de Montjoye, Yves-Alexandre; Shmueli, Erez; Wang, Samuel S; Pentland, Alex Sandy

    2014-01-01

    The rise of smartphones and web services made possible the large-scale collection of personal metadata. Information about individuals' location, phone call logs, or web-searches, is collected and used intensively by organizations and big data researchers. Metadata has however yet to realize its full potential. Privacy and legal concerns, as well as the lack of technical solutions for personal metadata management is preventing metadata from being shared and reconciled under the control of the individual. This lack of access and control is furthermore fueling growing concerns, as it prevents individuals from understanding and managing the risks associated with the collection and use of their data. Our contribution is two-fold: (1) we describe openPDS, a personal metadata management framework that allows individuals to collect, store, and give fine-grained access to their metadata to third parties. It has been implemented in two field studies; (2) we introduce and analyze SafeAnswers, a new and practical way of protecting the privacy of metadata at an individual level. SafeAnswers turns a hard anonymization problem into a more tractable security one. It allows services to ask questions whose answers are calculated against the metadata instead of trying to anonymize individuals' metadata. The dimensionality of the data shared with the services is reduced from high-dimensional metadata to low-dimensional answers that are less likely to be re-identifiable and to contain sensitive information. These answers can then be directly shared individually or in aggregate. openPDS and SafeAnswers provide a new way of dynamically protecting personal metadata, thereby supporting the creation of smart data-driven services and data science research.

  4. openPDS: protecting the privacy of metadata through SafeAnswers.

    Directory of Open Access Journals (Sweden)

    Yves-Alexandre de Montjoye

    Full Text Available The rise of smartphones and web services made possible the large-scale collection of personal metadata. Information about individuals' location, phone call logs, or web-searches, is collected and used intensively by organizations and big data researchers. Metadata has however yet to realize its full potential. Privacy and legal concerns, as well as the lack of technical solutions for personal metadata management is preventing metadata from being shared and reconciled under the control of the individual. This lack of access and control is furthermore fueling growing concerns, as it prevents individuals from understanding and managing the risks associated with the collection and use of their data. Our contribution is two-fold: (1 we describe openPDS, a personal metadata management framework that allows individuals to collect, store, and give fine-grained access to their metadata to third parties. It has been implemented in two field studies; (2 we introduce and analyze SafeAnswers, a new and practical way of protecting the privacy of metadata at an individual level. SafeAnswers turns a hard anonymization problem into a more tractable security one. It allows services to ask questions whose answers are calculated against the metadata instead of trying to anonymize individuals' metadata. The dimensionality of the data shared with the services is reduced from high-dimensional metadata to low-dimensional answers that are less likely to be re-identifiable and to contain sensitive information. These answers can then be directly shared individually or in aggregate. openPDS and SafeAnswers provide a new way of dynamically protecting personal metadata, thereby supporting the creation of smart data-driven services and data science research.

  5. Metadata Design in the New PDS4 Standards - Something for Everybody

    Science.gov (United States)

    Raugh, Anne C.; Hughes, John S.

    2015-11-01

    The Planetary Data System (PDS) archives, supports, and distributes data of diverse targets, from diverse sources, to diverse users. One of the core problems addressed by the PDS4 data standard redesign was that of metadata - how to accommodate the increasingly sophisticated demands of search interfaces, analytical software, and observational documentation into label standards without imposing limits and constraints that would impinge on the quality or quantity of metadata that any particular observer or team could supply. And yet, as an archive, PDS must have detailed documentation for the metadata in the labels it supports, or the institutional knowledge encoded into those attributes will be lost - putting the data at risk.The PDS4 metadata solution is based on a three-step approach. First, it is built on two key ISO standards: ISO 11179 "Information Technology - Metadata Registries", which provides a common framework and vocabulary for defining metadata attributes; and ISO 14721 "Space Data and Information Transfer Systems - Open Archival Information System (OAIS) Reference Model", which provides the framework for the information architecture that enforces the object-oriented paradigm for metadata modeling. Second, PDS has defined a hierarchical system that allows it to divide its metadata universe into namespaces ("data dictionaries", conceptually), and more importantly to delegate stewardship for a single namespace to a local authority. This means that a mission can develop its own data model with a high degree of autonomy and effectively extend the PDS model to accommodate its own metadata needs within the common ISO 11179 framework. Finally, within a single namespace - even the core PDS namespace - existing metadata structures can be extended and new structures added to the model as new needs are identifiedThis poster illustrates the PDS4 approach to metadata management and highlights the expected return on the development investment for PDS, users and data

  6. Molecular cloning, characterization, and expression of an alfalfa (Medicago sativa L.) heme oxygenase-1 gene, MsHO1, which is pro-oxidants-regulated.

    Science.gov (United States)

    Fu, Guang-Qing; Xu, Sheng; Xie, Yan-Jie; Han, Bin; Nie, Li; Shen, Wen-Biao; Wang, Ren

    2011-07-01

    It has been documented that plant heme oxygenase-1 (HO-1; EC 1.14.99.3) is both development- and stress-regulated, thus it plays a vital role in light signalling and stress responses. In this study, an alfalfa (Medica sativa L.) HO-1 gene MsHO1 was isolated and sequenced. It contains four exons and three introns within genomic DNA sequence and encodes a polypeptide with 283 amino acids. MsHO1 had a conserved HO signature sequence and showed high similarity to other HOs in plants, especially HO-1 isoform. The MsHO1:GFP fusion protein was localized in the chloroplast. Further biochemical activity analysis of mature MsHO1, which was expressed in Escherichia coli, showed that the Vmax was 48.78 nmol biliverdin-IXα (BV) h⁻¹ nmol⁻¹ protein with an apparent Km value for hemin of 2.33 μM, and the optimum Tm and pH were 37 °C and 7.2, respectively. Results of semi-quantitative RT-PCR and western blot showed that the expressions of MsHO1 were higher in alfalfa stems and leaves than those in germinating seeds and roots. Importantly, MsHO1 gene expression and protein level were induced significantly by some pro-oxidant compounds, including hemin and nitric oxide (NO) donor sodium nitroprusside (SNP). In conclusion, MsHO1 may play an important role in oxidative responses.

  7. The CMDI MI Search Engine: Access to Language Resources and Tools Using Heterogeneous Metadata Schemas

    NARCIS (Netherlands)

    Zhang, J.; Kemps-Snijders, M.; Bennis, H.J.; Zaphiris, P; Buchanan, G; Rasmussen, E; Loizides, F

    2012-01-01

    The CLARIN Metadata Infrastructure (CMDI) provides a solution for access to different types of language resources and tools across Europe. Researchers have different research data and tools, which are large-scale and described differently with domain-specific metadata. In the context of the Search &

  8. Characterization of Educational Resources in e-Learning Systems Using an Educational Metadata Profile

    Science.gov (United States)

    Solomou, Georgia; Pierrakeas, Christos; Kameas, Achilles

    2015-01-01

    The ability to effectively administrate educational resources in terms of accessibility, reusability and interoperability lies in the adoption of an appropriate metadata schema, able of adequately describing them. A considerable number of different educational metadata schemas can be found in literature, with the IEEE LOM being the most widely…

  9. Streamlining Metadata Ingest and Discovery Using ECHO's REST-based API

    Science.gov (United States)

    Ericson, R.; Baynes, K.; Pilone, D.

    2012-12-01

    Enabling user access to Earth science data is a primary goal of NASA's Earth Observing System Data and Information Systems (EOSDIS) programs. NASA's Earth Observing System ClearingHOuse (ECHO) acts as the core metadata repository for EOSDIS's data centers, providing a centralized mechanism for metadata and data discovery and retrieval. ECHO has recently made strides to restructure its API; allowing data partners to streamline and synchronize their metadata ingest using RESTful web services. ECHO's legacy ingest process involves data uploads via FTP with asynchronous result reporting. Data centers provide single xml files or compressed data (zip) files that are unpacked, indexed and stored in ECHO data tables for future search and retrieval. Any problems related to metadata validation and ingest are reported after batch processing of discrete jobs have been completed. With ECHO's new REST-based web services, data providers will receive immediate feedback about the status of their ingested data and can ensure that their data exports are successful as soon as the data is posted to our repository. This presentation will introduce ECHO's potential new and existing data partners to the process of implementing data ingest via its RESTful web services API, providing real-world examples of end-to-end metadata management. Examples of ECHO's support of multi-format metadata ingest using both ECHO10 and ISO 19115 metadata formats will be showcased. This presentation will also pay special attention to tuning a provider's metadata, making it more easily searched and accessed via ECHO's various interfaces.

  10. An Assistant for Loading Learning Object Metadata: An Ontology Based Approach

    Science.gov (United States)

    Casali, Ana; Deco, Claudia; Romano, Agustín; Tomé, Guillermo

    2013-01-01

    In the last years, the development of different Repositories of Learning Objects has been increased. Users can retrieve these resources for reuse and personalization through searches in web repositories. The importance of high quality metadata is key for a successful retrieval. Learning Objects are described with metadata usually in the standard…

  11. Batch Metadata Editing - Dspace 1.6: a workshop/tutorial to inform and build skills

    OpenAIRE

    Hayes, Leonie; Lewis, Stuart; Newton-Wade, Vanessa

    2010-01-01

    A new feature of the DSpace 1.6 Software is "Batch Metadata Editing". It gives Repository staff the ability to export metadata and change it easily for re-upload into the system. Once you try this "Data Entry" will never be the same.

  12. 76 FR 48769 - Metadata Standards To Support Nationwide Electronic Health Information Exchange

    Science.gov (United States)

    2011-08-09

    ... for HL7 2.5.1: Public Health Information Network HL7 Version 2.5 Message Structure Specification for... optional portion of the actor/affiliation metadata should point to the entity record in the Enterprise... provenance metadata from a specific security architecture, would its advantages outweigh those of...

  13. DataNet: A flexible metadata overlay over file resources

    CERN Document Server

    CERN. Geneva

    2014-01-01

    Managing and sharing data stored in files results in a challenge due to data amounts produced by various scientific experiments [1]. While solutions such as Globus Online [2] focus on file transfer and synchronization, in this work we propose an additional layer of metadata over file resources which helps to categorize and structure the data, as well as to make it efficient in integration with web-based research gateways. A basic concept of the proposed solution [3] is a data model consisting of entities built from primitive types such as numbers, texts and also from files and relationships among different entities. This allows for building complex data structure definitions and mix metadata and file data into a single model tailored for a given scientific field. A data model becomes actionable after being deployed as a data repository which is done automatically by the proposed framework by using one of the available PaaS (platform-as-a-service) platforms and is exposed to the world as a REST service, which...

  14. Metadata In, Library Out. A Simple, Robust Digital Library System

    Directory of Open Access Journals (Sweden)

    Tonio Loewald

    2010-06-01

    Full Text Available Tired of being held hostage to expensive systems that did not meet our needs, the University of Alabama Libraries developed an XML schema-agnostic, light-weight digital library delivery system based on the principles of "Keep It Simple, Stupid!" Metadata and derivatives reside in openly accessible web directories, which support the development of web agents and new usability software, as well as modification and complete retrieval at any time. The file name structure is echoed in the file system structure, enabling the delivery software to make inferences about relationships, sequencing, and complex object structure without having to encapsulate files in complex metadata schemas. The web delivery system, Acumen, is built of PHP, JSON, JavaScript and HTML5, using MySQL to support fielded searching. Recognizing that spreadsheets are more user-friendly than XML, an accompanying widget, Archivists Utility, transforms spreadsheets into MODS based on rules selected by the user. Acumen, Archivists Utility, and all supporting software scripts will be made available as open source.

  15. ARIADNE: a Tracking System for Relationships in LHCb Metadata

    Science.gov (United States)

    Shapoval, I.; Clemencic, M.; Cattaneo, M.

    2014-06-01

    The data processing model of the LHCb experiment implies handling of an evolving set of heterogeneous metadata entities and relationships between them. The entities range from software and databases states to architecture specificators and software/data deployment locations. For instance, there is an important relationship between the LHCb Conditions Database (CondDB), which provides versioned, time dependent geometry and conditions data, and the LHCb software, which is the data processing applications (used for simulation, high level triggering, reconstruction and analysis of physics data). The evolution of CondDB and of the LHCb applications is a weakly-homomorphic process. It means that relationships between a CondDB state and LHCb application state may not be preserved across different database and application generations. These issues may lead to various kinds of problems in the LHCb production, varying from unexpected application crashes to incorrect data processing results. In this paper we present Ariadne - a generic metadata relationships tracking system based on the novel NoSQL Neo4j graph database. Its aim is to track and analyze many thousands of evolving relationships for cases such as the one described above, and several others, which would otherwise remain unmanaged and potentially harmful. The highlights of the paper include the system's implementation and management details, infrastructure needed for running it, security issues, first experience of usage in the LHCb production and potential of the system to be applied to a wider set of LHCb tasks.

  16. Effectivenes of inoculation in alfalfa breeding in ecological conditions of the Bjelovar and Bilogora county

    Directory of Open Access Journals (Sweden)

    Darko Uher

    2012-09-01

    Full Text Available Development and basic existence of animal production as well as production of high quality milk depends upon possibility of sufficient production of quality and protein sufficient forage. Forage crop that satisfies these demands is alfalfa which is one of the most important perennial forage crop legumes. The aim of this study was to enhance alfalfa production on acid soil by liming and alfalfa seed inoculation with efficient Sinorhizobium meliloti strains in order to reduce the use of mineral nitrogen fertilization and enable qualitative and cost effective production of forage on the dairy farms. Field trial was established at family farm in the area of Bjelovar and Bilogora county. During two years experimental period statistically significant influence of inoculation and liming on forage and dry matteryield was determined. Significantly the lowest yields were determined on untreated plots without liming material. In all untreated plots, significantly lower yields were determined, but significant differences in yields were also obtained by inoculation with different S. meliloti strains, emphasizing the importance of strains selection used for alfalfa inoculation. In both experimental years total forage yield were ranging from 34 t/ha (untreated plots without liming up to 60 t/ha on plots inoculated with strain 2011 and without liming. Values of total dry matter yield for both experimental years ranged from 6.5 t/ha (untreated plots without liming up to 15,7 t/ha on plots inoculated with strain 2011 without liming. Results of this study showed that application of liming materials for acidity removal had positive effect on alfalfa yields in both experimental years and significantly improved alfalfa production on acid soils. The results of this study clearly showed that inoculation with selected S. meliloti strains may improve alfalfa production on acid soils and may contribute to more efficient forage production for dairy farms under particular

  17. Screening of Cd tolerant genotypes and isolation of metallothionein genes in alfalfa (Medicago sativa L.)

    Energy Technology Data Exchange (ETDEWEB)

    Wang Xiaojuan, E-mail: xiaojuanwang@lzu.edu.cn [School of Pastoral Agriculture Science and Technology, Lanzhou University, P.O. Box 61, Lanzhou 730020 (China); Song, Yu [School of Pastoral Agriculture Science and Technology, Lanzhou University, P.O. Box 61, Lanzhou 730020 (China); Environment Management College of China, Qinhuangdao 066004 (China); Ma Yanhua [Hebei Normal University of Science and Technology, Qinhuangdao 066004 (China); Zhuo Renying [Key Lab of Tree Genomics, Research Institute of Subtropical of Forest, Chinese Academy of Forest, Fuyang 311400 (China); Jin Liang [School of Pastoral Agriculture Science and Technology, Lanzhou University, P.O. Box 61, Lanzhou 730020 (China)

    2011-12-15

    In order to evaluate Cd tolerance in wide-ranging sources of alfalfa (Medicago sativa) and to identify Cd tolerant genotypes which may potentially be useful for restoring Cd-contaminated environments, thirty-six accessions of alfalfa were screened under hydroponic culture. Our results showed that the relative root growth rate varied from 0.48 to 1.0, which indicated that different alfalfa accessions had various responses to Cd stress. The candidate fragments derived from differentially expressed metallothionein (MT) genes were cloned from leaves of two Cd tolerant genotypes, YE and LZ. DNA sequence and the deduced protein sequence showed that MsMT2a and MsMT2b had high similarity to those in leguminous plants. DDRT-PCR analysis showed that MsMT2a expressed in both YE and LZ plants under control and Cd stress treatment, but MsMT2b only expressed under Cd stress treatment. This suggested that MsMT2a was universally expressed in leaves of alfalfa but expression of MsMT2b was Cadmium (Cd) inducible. - Highlights: > Evaluate Cd tolerance in wide sources of alfalfa accessions. > Identify Cd-hyperaccumulators potentially useful for restoring Cd-contaminated environments. > Cloned differentially expressed metallothionein (MT) genes. > Characteristics and deduced protein sequence of MsMT2a and MsMT2b were analyzed. > MsMT2a might be a universally gene of alfalfa but MsMT2b might be an inductive gene. - Two Cd tolerant alfalfa genotypes were screened and their metallothionein genes were cloned which showed that MsMT2a was universally expressed but MsMT2b was Cd inducible expression.

  18. Contribution of exopeptidases to formation of nonprotein nitrogen during ensiling of alfalfa.

    Science.gov (United States)

    Tao, L; Zhou, H; Guo, X S; Long, R J; Zhu, Y; Cheng, W

    2011-08-01

    The experiment was conducted to investigate the exopeptidase classes in alfalfa (Medicago sativa L.) leaves, and to determine their contribution to the formation of nonprotein nitrogen (NPN) components during ensiling. Six classes of inhibitors that included bestatin (aminopeptidase inhibitor), potato carboxypeptidase inhibitor (PCI, carboxypeptidase inhibitor), 1,10-phenanthroline (dipeptidase inhibitor), diprotin A (dipeptidyl-peptidase inhibitor), butabindide (tripeptidyl-peptidase inhibitor), and dipeptide Phe-Arg (peptidyl-dipeptidase inhibitor) were used. To determine the contribution of each exopeptidase to the formation of NPN products, aqueous extracts of fresh alfalfa were fermented to imitate the proteolytic process of ensiled alfalfa and to ensure that each class of exopeptidase inhibitor would have immediate contact with the proteases in the alfalfa extract. Five classes of exopeptidases; namely, aminopeptidase, carboxypeptidase, dipeptidase, dipeptidyl-peptidase, and tripeptidyl-peptidase, were shown to be present in alfalfa leaves, each playing a different role in alfalfa protein degradation. Aminopeptidase, carboxypeptidase, and dipeptidase were the main exopeptidases contributing to the formation of NH(3)-N. Among the 5 exopeptidases, tripeptidyl-peptidase appeared to be the principal exopeptidase in hydrolyzing forage protein into peptides, whereas carboxypeptidase and dipeptidase appeared to be more important in contributing to the formation of amino acid-N. Dipeptidyl-peptidase and tripeptidyl-peptidase did not play a role in the formation of NH(3)-N or amino acid-N. Dipeptidase, carboxypeptidase, and tripeptidyl-peptidase were the principal exopeptidases for hydrolyzing forage protein into NPN during ensilage, and treatment with a mixture of the 5 inhibitors reduced the total NPN concentration in the fermented alfalfa extract to about 45% of that in the control after 21 d of fermentation.

  19. Transcriptome analysis of resistant and susceptible alfalfa cultivars infected with root-knot nematode Meloidogyne incognita.

    Science.gov (United States)

    Postnikova, Olga A; Hult, Maria; Shao, Jonathan; Skantar, Andrea; Nemchinov, Lev G

    2015-01-01

    Nematodes are one of the major limiting factors in alfalfa production. Root-knot nematodes (RKN, Meloidogyne spp.) are widely distributed and economically important sedentary endoparasites of agricultural crops and they may inflict significant damage to alfalfa fields. As of today, no studies have been published on global gene expression profiling in alfalfa infected with RKN or any other plant parasitic nematode. Very little information is available about molecular mechanisms that contribute to pathogenesis and defense responses in alfalfa against these pests and specifically against RKN. In this work, we performed root transcriptome analysis of resistant (cv. Moapa 69) and susceptible (cv. Lahontan) alfalfa cultivars infected with RKN Meloidogyne incognita, widespread root-knot nematode species and a major pest worldwide. A total of 1,701,622,580 pair-end reads were generated on an Illumina Hi-Seq 2000 platform from the roots of both cultivars and assembled into 45,595 and 47,590 transcripts in cvs Moapa 69 and Lahontan, respectively. Bioinformatic analysis revealed a number of common and unique genes that were differentially expressed in susceptible and resistant lines as a result of nematode infection. Although the susceptible cultivar showed a more pronounced defense response to the infection, feeding sites were successfully established in its roots. Characteristically, basal gene expression levels under normal conditions differed between the two cultivars as well, which may confer advantage to one of the genotypes toward resistance to nematodes. Differentially expressed genes were subsequently assigned to known Gene Ontology categories to predict their functional roles and associated biological processes. Real-time PCR validated expression changes in genes arbitrarily selected for experimental confirmation. Candidate genes that contribute to protection against M. incognita in alfalfa were proposed and alfalfa-nematode interactions with respect to resistance

  20. Analysis of the alfalfa root transcriptome in response to salinity stress.

    Science.gov (United States)

    Postnikova, Olga A; Shao, Jonathan; Nemchinov, Lev G

    2013-07-01

    Salinity is one of the major abiotic factors affecting alfalfa productivity. Identifying genes that control this complex trait will provide critical insights for alfalfa breeding programs. To date, no studies have been published on a deep sequencing-based profiling of the alfalfa transcriptome in response to salinity stress. Observations gathered through research on reference genomes may not always be applicable to alfalfa. In this work, Illumina RNA-sequencing was performed in two alfalfa genotypes contrasting in salt tolerance, in order to estimate a broad spectrum of genes affected by salt stress. A total of 367,619,586 short reads were generated from cDNA libraries originated from roots of both lines. More than 60,000 tentative consensus sequences (TCs) were obtained and, among them, 74.5% had a significant similarity to proteins in the NCBI database. Mining of simple sequence repeats (SSRs) from all TCs revealed 6,496 SSRs belonging to 3,183 annotated unigenes. Bioinformatics analysis showed that the expression of 1,165 genes, including 86 transcription factors (TFs), was significantly altered under salt stress. About 40% of differentially expressed genes were assigned to known gene ontology (GO) categories using Arabidopsis GO. A random check of differentially expressed genes by quantitative real-time PCR confirmed the bioinformatic analysis of the RNA-seq data. A number of salt-responsive genes in both tested genotypes were identified and assigned to functional classes, and gene candidates with roles in the adaptation to salinity were proposed. Alfalfa-specific data on salt-responsive genes obtained in this work will be useful in understanding the molecular mechanisms of salinity tolerance in alfalfa.

  1. Transcriptome analysis of resistant and susceptible alfalfa cultivars infected with root-knot nematode Meloidogyne incognita.

    Directory of Open Access Journals (Sweden)

    Olga A Postnikova

    Full Text Available Nematodes are one of the major limiting factors in alfalfa production. Root-knot nematodes (RKN, Meloidogyne spp. are widely distributed and economically important sedentary endoparasites of agricultural crops and they may inflict significant damage to alfalfa fields. As of today, no studies have been published on global gene expression profiling in alfalfa infected with RKN or any other plant parasitic nematode. Very little information is available about molecular mechanisms that contribute to pathogenesis and defense responses in alfalfa against these pests and specifically against RKN. In this work, we performed root transcriptome analysis of resistant (cv. Moapa 69 and susceptible (cv. Lahontan alfalfa cultivars infected with RKN Meloidogyne incognita, widespread root-knot nematode species and a major pest worldwide. A total of 1,701,622,580 pair-end reads were generated on an Illumina Hi-Seq 2000 platform from the roots of both cultivars and assembled into 45,595 and 47,590 transcripts in cvs Moapa 69 and Lahontan, respectively. Bioinformatic analysis revealed a number of common and unique genes that were differentially expressed in susceptible and resistant lines as a result of nematode infection. Although the susceptible cultivar showed a more pronounced defense response to the infection, feeding sites were successfully established in its roots. Characteristically, basal gene expression levels under normal conditions differed between the two cultivars as well, which may confer advantage to one of the genotypes toward resistance to nematodes. Differentially expressed genes were subsequently assigned to known Gene Ontology categories to predict their functional roles and associated biological processes. Real-time PCR validated expression changes in genes arbitrarily selected for experimental confirmation. Candidate genes that contribute to protection against M. incognita in alfalfa were proposed and alfalfa-nematode interactions with

  2. SCEC Community Modeling Environment (SCEC/CME) - Data and Metadata Management Issues

    Science.gov (United States)

    Minster, J.; Faerman, M.; Ely, G.; Maechling, P.; Gupta, A.; Xin, Q.; Kremenek, G.; Shkoller, B.; Olsen, K.; Day, S.; Moore, R.

    2003-12-01

    One of the goals of the SCEC Community Modeling Environment is to facilitate the execution of substantial collections of large numerical simulations. Since such simulations are resource-intensive, and can generate extremely large outputs, implementing this concept raises a host of data and metadata management challenges. Due to the high computational cost involved in running these simulations, one must balance the cost of repeating such simulations against the burden of archiving the produced datasets making them accessible for future use such as post processing or visualization, without the need of re-computation. Further, a carefully selected collection of such data sets might be used as benchmarks for assessing accuracy and performance of future simulations, developing post-processing software such as visualization tools, and testing data and metadata management strategies. The problem is rapidly compounded if one contemplates the possibility of computing ensemble averages for simulations of complex nonlinear systems. The definition and organization of a complete set of metadata to describe fully any given simulation is a surprisingly complex task, which we approach from the point of view of developing a community digital library, which provides the means to organize the material, as well as standard metadata attributes. Web-based discovery mechanisms are then used to support browsing and retrieval of data. A key component is the selection of appropriate descriptive metadata. We compare existing metadata standards from the digital library community, federal standards, and discipline specific metadata attributes. The digital library community has developed a standard for organizing metadata, called the Metadata Encoding and Transmission Standard (METS). This schema supports descriptive (provenance), administrative (location), structural (component relationships), and behavioral (display and manipulation applications). The organization can be augmented with

  3. Review of Metadata Elements within the Web Pages Resulting from Searching in General Search Engines

    Directory of Open Access Journals (Sweden)

    Sima Shafi’ie Alavijeh

    2009-12-01

    Full Text Available The present investigation was aimed to study the scope of presence of Dublin Core metadata elements and HTML meta tags in web pages. Ninety web pages were chosen by searching general search engines (Google, Yahoo and MSN. The scope of metadata elements (Dublin Core and HTML Meta tags present in these pages as well as existence of a significant correlation between presence of meta elements and type of search engines were investigated. Findings indicated very low presence of both Dublin Core metadata elements and HTML meta tags in the pages retrieved which in turn illustrates the very low usage of meta data elements in web pages. Furthermore, findings indicated that there are no significant correlation between the type of search engine used and presence of metadata elements. From the standpoint of including metadata in retrieval of web sources, search engines do not significantly differ from one another.

  4. Growing a Tree in the Forest: Constructing Folksonomies by Integrating Structured Metadata

    CERN Document Server

    Plangprasopchok, Anon; Getoor, Lise

    2010-01-01

    Many social Web sites allow users to annotate the content with descriptive metadata, such as tags, and more recently to organize content hierarchically. These types of structured metadata provide valuable evidence for learning how a community organizes knowledge. For instance, we can aggregate many personal hierarchies into a common taxonomy, also known as a folksonomy, that will aid users in visualizing and browsing social content, and also to help them in organizing their own content. However, learning from social metadata presents several challenges, since it is sparse, shallow, ambiguous, noisy, and inconsistent. We describe an approach to folksonomy learning based on relational clustering, which exploits structured metadata contained in personal hierarchies. Our approach clusters similar hierarchies using their structure and tag statistics, then incrementally weaves them into a deeper, bushier tree. We study folksonomy learning using social metadata extracted from the photo-sharing site Flickr, and demon...

  5. OAI-PMH repositories : quality issues regarding metadata and protocol compliance, tutorial 1

    CERN Document Server

    CERN. Geneva; Cole, Tim

    2005-01-01

    This tutorial will provide an overview of emerging guidelines and best practices for OAI data providers and how they relate to expectations and needs of service providers. The audience should already be familiar with OAI protocol basics and have at least some experience with either data provider or service provider implementations. The speakers will present both protocol compliance best practices and general recommendations for creating and disseminating high-quality "shareable metadata". Protocol best practices discussion will include coverage of OAI identifiers, date-stamps, deleted records, sets, resumption tokens, about containers, branding, errors conditions, HTTP server issues, and repository lifecycle issues. Discussion of what makes for good, shareable metadata will cover topics including character encoding, namespace and XML schema issues, metadata crosswalk issues, support of multiple metadata formats, general metadata authoring recommendations, specific recommendations for use of Dublin Core elemen...

  6. DataStaR: Bridging XML and OWL in Science Metadata Management

    Science.gov (United States)

    Lowe, Brian

    DataStaR is a science data “staging repository” developed by Albert R. Mann Library at Cornell University that produces semantic metadata while enabling the publication of data sets and accompanying metadata to discipline-specific data centers or to Cornell’s institutional repository. DataStaR, which employs OWL and RDF in its metadata store, serves as a Web-based platform for production and management of metadata and aims to reduce redundant manual input by reusing named ontology individuals. A key requirement of DataStaR is the ability to produce metadata records conforming to existing XML schemas that have been adopted by scientific communities. To facilitate this, DataStaR integrates ontologies that directly reflect XML schemas, generates HTML editing forms, and “lowers” ontology axioms into XML documents compliant with existing schemas. This paper describes our approach and implementation, and discusses the challenges involved.

  7. An inconvenient truth : file-level metadata and in-file metadata caching in the (file-agnostic) ATLAS event store.

    Energy Technology Data Exchange (ETDEWEB)

    Malon, D.; van Gemmeren, P.; Hawkings, R.; Schaffer, A.; High Energy Physics; CERN; Univ. Paris-Sud

    2008-01-01

    In the ATLAS event store, files are sometimes 'an inconvenient truth.' From the point of view of the ATLAS distributed data management system, files are too small - datasets are the units of interest. From the point of view of the ATLAS event store architecture, files are simply a physical clustering optimization: the units of interest are event collections - sets of events that satisfy common conditions or selection predicates - and such collections may or may not have been accumulated into files that contain those events and no others. It is nonetheless important to maintain file-level metadata, and to cache metadata in event data files. When such metadata may or may not be present in files, or when values may have been updated after files are written and replicated, a clear and transparent model for metadata retrieval from the file itself or from remote databases is required. In this paper we describe how ATLAS reconciles its file and non-file paradigms, the machinery for associating metadata with files and event collections, and the infrastructure for metadata propagation from input to output for provenance record management and related purposes.

  8. An inconvenient truth: file-level metadata and in-file metadata caching in the (file-agnostic) ATLAS event store

    Energy Technology Data Exchange (ETDEWEB)

    Malon, D; Gemmeren, P van [Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439 (United States); Hawkings, R [European Organization for Nuclear Research, CERN CH-1211 Geneve 23 (Switzerland); Schaffer, A [LAL, Univ Paris-Sud, IN2P3/CNRS, Orsay (France)], E-mail: malon@anl.gov

    2008-07-15

    In the ATLAS event store, files are sometimes 'an inconvenient truth'. From the point of view of the ATLAS distributed data management system, files are too small-datasets are the units of interest. From the point of view of the ATLAS event store architecture, files are simply a physical clustering optimization: the units of interest are event collections-sets of events that satisfy common conditions or selection predicates-and such collections may or may not have been accumulated into files that contain those events and no others. It is nonetheless important to maintain file-level metadata, and to cache metadata in event data files. When such metadata may or may not be present in files, or when values may have been updated after files are written and replicated, a clear and transparent model for metadata retrieval from the file itself or from remote databases is required. In this paper we describe how ATLAS reconciles its file and non-file paradigms, the machinery for associating metadata with files and event collections, and the infrastructure for metadata propagation from input to output for provenance record management and related purposes.

  9. Effects of additive application upon ad libitum intake, in vivo digestibility and nitrogen balance of alfalfa haylage

    Directory of Open Access Journals (Sweden)

    Mladen Knežević

    2009-09-01

    Full Text Available The research objective was to determine the effect of the additive Sill-All application on ad libitum intake, in vivo digestibility and nitrogen balance of alfalfa haylage. About 40 % alfalfa plants was ensiled at the phonological flowering stage into plastic foil-wrapped bales without or with additive (2 L t-1 plant mass. No statistically significant differences were found between alfalfa ensiled without additive and alfalfa ensiled with additive for the content of dry matter (DM (632 g and 631 g DM kg-1 fresh sample, respectively. Alfalfa ensiled without additive contained 921 g organic matter (OM kg-1 DM, which was significantly higher (P<0.001 compared to alfalfa ensiled with additive (902 g OM kg-1 DM. Alfalfa ensiled without additive contained 141 g crude proteins (CP kg-1 DM, which was significantly higher (P<0.001 compared to alfalfa ensiled with additive (139 g CP kg-1 DM. Alfalfa ensiled with additive contained significantly less acid detergent fibers (ADF (P<0.001 compared to alfalfa ensiled without additive (445 g kg-1 DM and 456 g kg-1 DM, respectively and had a lower pH value (P<0.001 (5.29 and 5.56, respectively. No statistically significant differences were found between the studied feeding treatments for ad libitum intake of fresh ration and DM ration, for the measured parameters of digestibility and N balance. It was concluded that addition of the additive to alfalfa haylage led to significant changes in chemical composition; however, changes in chemical composition had no impact on measured biological parameters (ad libitum intake, in vivo digestibility and nitrogen balance.

  10. Relationship of red and photographic infrared spectral radiances to alfalfa biomass, forage water content, percentage canopy cover, and severity of drought stress

    Science.gov (United States)

    Tucker, C. J.; Elgin, J. H., Jr.; Mcmurtrey, J. E., III

    1979-01-01

    Red and photographic infrared spectral data were collected using a handheld radiometer for two cuttings of alfalfa. Significant linear and non-linear correlation coefficients were found between the spectral variables and plant height, biomass, forage water content, and estimated canopy cover for the earlier alfalfa cutting. The alfalfa of later cutting experienced a period of severe drought stress which limited growth. The spectral variables were found to be highly correlated with the estimated drought scores for this alfalfa cutting.

  11. 数据仓库中的元数据与CWM规范%Metadata in Data Warehouse and CWM Specification

    Institute of Scientific and Technical Information of China (English)

    张丽娟; 李舟军; 陈火旺

    2003-01-01

    Metadata plays a very important role in data warehouse. Metadata helps developers and administrators develop, maintain and manage data warehouse, it also helps end users understand, acquire and analyze data. In this paper contents and functions about metadata are introduced,and CWM specification advanced by OMG is discussed.

  12. Enteric methane emission, diet digestibility, and nitrogen excretion from beef heifers fed sainfoin or alfalfa.

    Science.gov (United States)

    Chung, Y-H; Mc Geough, E J; Acharya, S; McAllister, T A; McGinn, S M; Harstad, O M; Beauchemin, K A

    2013-10-01

    Effects of plant-bound condensed tannin (CT)-containing sainfoin vs. CT-free alfalfa (or low-CT alfalfa-sainfoin mixture), plant stage of maturity, and their interaction on enteric methane (CH4) emissions, diet digestibility, and N excretion were studied, using 8 ruminally cannulated beef heifers in 2 sequential short-term experiments (Exp. 1 and 2). In Exp. 1, first growth legumes were harvested daily and offered fresh to heifers. Heifers were assigned to 100% sainfoin or 80% alfalfa:20% sainfoin (as-fed basis). Responses were measured at early (late vegetative to early bud; stage 2 to 3) and late (early flower; stage 5) stage of maturity. In Exp. 2, the same legumes were harvested from second growth (late bud; stage 4) and offered to heifers as hay; 100% sainfoin or 100% alfalfa. In both experiments, heifers were fed once daily at 1× maintenance. When fed as fresh forage (Exp. 1), sainfoin, compared with the alfalfa-sainfoin blend, had greater digestibility of OM (74.7 vs. 70.9%; P = 0.02), yet tended to have lower CP digestibility (73.2 vs. 77.1%; P = 0.059). There was no difference between fresh legumes for CH4 emissions [25.9 g/kg DMI ± 4.02 SE; 8.5% of gross energy intake (GEI) ± 1.26 SE; or 36.8 g/kg digested OM ± 1.75 SE]. The fresh legumes were more digestible at early, rather than at late, maturity and, consequently, enteric CH4 (27.4 vs. 24.4 g/kg DMI; P emissions (22.4 g/kg DMI ± 1.29 SD and 7.1% GEI ± 0.40 SD). However, on the basis of OM digested, CH4 emissions were lower for sainfoin than alfalfa hay (44.3 vs. 59.0 g/kg; P = 0.008). Percentage of total N excretion in urine was less for sainfoin compared with alfalfa, both for fresh legumes in Exp. 1 (74 vs. 78%; P = 0.017) or hay in Exp. 2 (64 vs. 72%; P emissions from beef cattle fed at maintenance as compared with feeding either 80% alfalfa:20% sainfoin (fresh forages) or 100% alfalfa (hay). Feeding fresh legumes harvested between the late vegetative to early bud stage, compared with

  13. Effect of quantity, quality, and length of alfalfa hay on selective consumption by dairy cows.

    Science.gov (United States)

    Leonardi, C; Armentano, L E

    2003-02-01

    Twenty-four lactating Holstein cows were used in a replicated 6 x 6 Latin square design. Experimental periods were 6 or 7 d. Cows were housed in tie-stalls, and diets were fed ad libitum twice daily at 1100 and 1600 h. Diets contained 60% concentrate and either 40% alfalfa hay or 20% alfalfa hay and 20% alfalfa silage (dry matter basis). The effect of quantity, quality, and length of hay on sorting behavior was determined. Treatments consisted of 20% lower or higher quality long alfalfa hay, 20% lower or higher quality chopped alfalfa hay, and 40% lower or higher quality chopped alfalfa hay. Variation of sorting among cows was also determined. Particle size distribution of samples of as-fed total mixed rations and orts were determined using the Wisconsin particle size separator. Screens have square holes with diagonals of 26.9, 18, 8.98, 5.61, and 1.65 mm (screens Y1 to Y5, respectively). Sorting was calculated as the actual intake of each fraction expressed as a percentage ofthe predicted intake. Increasing the proportion of dry hay increased sorting. Quality of alfalfa hays that were offered did not affect sorting activity. Feeding long alfalfa hay increased selective consumption of fine particles. However, feeding long alfalfa hay also increased intake of longer particles because a higher percentage of long particles was offered. Across treatments, animals consistently sorted against longer particles in favor of finer particles. In particular, intake of Y1 as a percentage of the predicted intake was the most variable. Average Y1 intake, across the six treatments for each cow, was between 60 and 70% of predicted intake for four cows, 71 to 80% for 11 cows, 81 to 90% for five cows, 91 to 100% for two cows, and 101 to 110% for two cows. On one diet a cow failed to consume any of the Y1 portion of the total mixed ration. This variation among animals in sorting of very long feed particles may have practical significance.

  14. 7 CFR 202.44 - Proceedings under section 305(b) to determine whether foreign alfalfa or red clover seed is not...

    Science.gov (United States)

    2010-01-01

    ... foreign alfalfa or red clover seed is not adapted for general agricultural use in the United States. 202... Proceedings under section 305(b) to determine whether foreign alfalfa or red clover seed is not adapted for... for the purpose of determining whether seed of alfalfa or red clover from any foreign country...

  15. Implications of season and management protocol on the landscape of gene regulation during diapause development in the Alfalfa Leaf Cutting Bee

    Science.gov (United States)

    : The alfalfa leaf cutting bee, Megachile rotundata, is the world’s most intensively managed solitary bee for commercial pollination. It is the primary pollinator of seed alfalfa, a valuable crop for dairy cow feed. Overwintering bees emerge in the spring during alfalfa bloom to mate an...

  16. The Role of Proanthocyanidins Complex in Structure and Nutrition Interaction in Alfalfa Forage.

    Science.gov (United States)

    Jonker, Arjan; Yu, Peiqiang

    2016-05-23

    Alfalfa (Medicago sativa L.) is one of the main forages grown in the world. Alfalfa is a winter hardy, drought tolerant, N-fixing legume with a good longevity, high yield, high nutrient levels, high digestibility, unique structural to non-structural components ratio, high dry matter intake, and high animal productivity per hectare. However, its main limitation is its excessively rapid initial rate of protein degradation in the rumen, which results in pasture bloat and inefficient use of protein with consequent excessive excretions of nitrogen into the environment. Proanthocyanidins are secondary plant metabolites that can bind with protein and thereby reduce the rate and extent of ruminal protein degradation. However, these secondary metabolites do not accumulate in alfalfa. This review aims to firstly describe the events involved in the rapid release of protein from alfalfa and its effect on ruminant nutrition, environmental pollution, and pasture bloat; secondly, to describe occurrence, structure, functions and benefits of moderate amounts of proanthocyanidin; and finally, to describe the development of alfalfa which accumulates moderate amounts of proanthocyanidins. The emphasis of this review focuses on the role of proanthocyanidins compounds in structure and nutrition interaction in ruminant livestock systems.

  17. The Role of Proanthocyanidins Complex in Structure and Nutrition Interaction in Alfalfa Forage

    Directory of Open Access Journals (Sweden)

    Arjan Jonker

    2016-05-01

    Full Text Available Alfalfa (Medicago sativa L. is one of the main forages grown in the world. Alfalfa is a winter hardy, drought tolerant, N-fixing legume with a good longevity, high yield, high nutrient levels, high digestibility, unique structural to non-structural components ratio, high dry matter intake, and high animal productivity per hectare. However, its main limitation is its excessively rapid initial rate of protein degradation in the rumen, which results in pasture bloat and inefficient use of protein with consequent excessive excretions of nitrogen into the environment. Proanthocyanidins are secondary plant metabolites that can bind with protein and thereby reduce the rate and extent of ruminal protein degradation. However, these secondary metabolites do not accumulate in alfalfa. This review aims to firstly describe the events involved in the rapid release of protein from alfalfa and its effect on ruminant nutrition, environmental pollution, and pasture bloat; secondly, to describe occurrence, structure, functions and benefits of moderate amounts of proanthocyanidin; and finally, to describe the development of alfalfa which accumulates moderate amounts of proanthocyanidins. The emphasis of this review focuses on the role of proanthocyanidins compounds in structure and nutrition interaction in ruminant livestock systems.

  18. Transgenic alfalfa plants expressing the sweetpotato Orange gene exhibit enhanced abiotic stress tolerance.

    Directory of Open Access Journals (Sweden)

    Zhi Wang

    Full Text Available Alfalfa (Medicago sativa L., a perennial forage crop with high nutritional content, is widely distributed in various environments worldwide. We recently demonstrated that the sweetpotato Orange gene (IbOr is involved in increasing carotenoid accumulation and enhancing resistance to multiple abiotic stresses. In this study, in an effort to improve the nutritional quality and environmental stress tolerance of alfalfa, we transferred the IbOr gene into alfalfa (cv. Xinjiang Daye under the control of an oxidative stress-inducible peroxidase (SWPA2 promoter through Agrobacterium tumefaciens-mediated transformation. Among the 11 transgenic alfalfa lines (referred to as SOR plants, three lines (SOR2, SOR3, and SOR8 selected based on their IbOr transcript levels were examined for their tolerance to methyl viologen (MV-induced oxidative stress in a leaf disc assay. The SOR plants exhibited less damage in response to MV-mediated oxidative stress and salt stress than non-transgenic plants. The SOR plants also exhibited enhanced tolerance to drought stress, along with higher total carotenoid levels. The results suggest that SOR alfalfa plants would be useful as forage crops with improved nutritional value and increased tolerance to multiple abiotic stresses, which would enhance the development of sustainable agriculture on marginal lands.

  19. Accumulation and residue of napropamide in alfalfa (Medicago sativa) and soil involved in toxic response.

    Science.gov (United States)

    Cui, Li E; Yang, Hong

    2011-06-15

    Napropamide belongs to the amide herbicide family and widely used to control weeds in farmland. Intensive use of the herbicide has resulted in widespread contamination to ecosystems. The present study demonstrated an analysis on accumulation of the toxic pesticide napropamide in six genotypes of alfalfa (Medicago sativa), along with biological parameters and its residues in soils. Soil was treated with napropamide at 3 mg kg(-1) dry soil and alfalfa plants were cultured for 10 or 30 d, respectively. The maximum value for napropamide accumulation is 0.426 mg kg(-1) in shoots and 2.444 mg kg(-1) in roots. The napropamide-contaminated soil with alfalfa cultivation had much lower napropamide concentrations than the control (soil without alfalfa cultivation). Also, the content of napropamide residue in the rhizosphere was significantly lower than that in the non-rhizosphere soil. M. sativa exposed to 3 mg kg(-1) napropamide showed inhibited growth. Further analysis revealed that plants treated with napropamide accumulated more reactive oxygen species (O(2)(-) and H(2)O(2)) and less amounts of chlorophyll. However, not all cultivars showed oxidative injury, suggesting that the alfalfa cultivars display different tolerance to napropamide.

  20. Yield, chemical composition and persistence of alfalfa on moderately acidic mountain soil

    Directory of Open Access Journals (Sweden)

    Josip Leto

    2006-12-01

    Full Text Available Due to its excellent nutritional characteristics and high yields, alfalfa is the most important forage crop in roughage production. The main limiting factor in global food production is soil acidification. At the moment, about 40% of world agricultural soils are acidic. It is difficult to grow alfalfa on acid soils (pH 0.05. Average DM yield of all cultivars in the year 2000 was 7.07 t/ha, in the year 2001 it was 10.94 t/ha, and finally in the year 2002 it was 12.78 t/ha. Significant differences in DM yields were recorded between cuttings (P0.05. Mean crude protein content was 28.2%, while contents of crude fat, crude fibers and non nitrogen free extract (NFE were 3.73%, 16.15%, 29.19%, respectively. No significant differences in alfalfa ground cover were recorded between cultivars in autumn or in spring in all experimental years (P>0.05. Significant differences in alfalfa ground cover in autumn (P<0.05 and in spring (P<0.01 were recorded between years. The lowest average ground cover was recorded in last experimental year: in the autumn of the year 2001(72.81% and in the spring of the year 2002 (64.37%. All investigated alfalfa cultivars are suitable for growing in similar agroecological conditions.

  1. Proteome analysis of alfalfa roots in response to water deifcit stress

    Institute of Scientific and Technical Information of China (English)

    Rahman Md Atikur; Kim Yong-Goo; AlamIftekhar; LIU Gong-she; Lee Hyoshin; Lee Jeung Joo; Lee Byung-Hyun

    2016-01-01

    To evaluate the response of alfalfa to water deifcit (WD) stress, WD-induced candidates were investigated through a proteomic approach. Alfalfa seedlings were exposed to WD stress for 12 and 15 days respectively, folowed by 3 days re-watering. Water deifcit increased H2O2content, lipid peroxidation, DPPH (1,1-diphenyl-2-picrylhydrazyl)-radical scavenging activity, and the free proline level in alfalfa roots. Root proteins were extracted and separated by two-dimentional polyacrylamide gel electrophoresis (2-DE). A total of 49 WD-responsive proteins were identiifed in alfalfa roots; 25 proteins were reproducibly found to be up-regulated and 24 were down-regulated. Two proteins, namely cytosolic ascorbate peroxidase (APx2) and putative F-box protein were newly detected on 2-DE maps of WD-treated plants. We identiifed several proteins including agamous-like 65, albumin b-32, inward rectifying potassium channel, and auxin-independent growth promoter. The identiifed proteins are involved in a variety of celular functions including calcium signaling, abacisic acid (ABA) biosynthesis, reactive oxygen species (ROS) regulation, transcription/ translation, antioxidant/detoxiifcation/stress defense, energy metabolism, signal transduction, and storage. These results indicate the potential candidates were responsible for adaptive response in alfalfa roots.

  2. Optimization of enzyme-assisted extraction of polysaccharides from alfalfa and its antioxidant activity.

    Science.gov (United States)

    Wang, Shaopu; Dong, Xiaofang; Tong, Jianming

    2013-11-01

    In this present study, an efficient complex enzyme-assisted extraction technology was developed and optimized to extract polysaccharides from alfalfa using four factors at five levels central composite rotatable response surface design (CCRD). The experimental data was fitted to a second order polynomial equation with high coefficient of determination values (R(2)>0.95). The results of statistical analysis showed that the linear and quadratic terms of these four variables had significant effects (Penzyme concentration of 2.5%, 2.0%, 3.0% (weight of alfalfa) of cellulase, papain and pectase, extraction temperature 52.7 °C, extraction pH 3.87, ratio of water to raw material 78.92 mL/g and extraction time 2.73 h. Under the optimal conditions, the experimental extraction yield of alfalfa polysaccharides was 5.05 ± 0.02%, which was well matched with the value (5.09%) predicted by the CCRD model. Moreover, evaluation of the antioxidant activity of polysaccharides from alfalfa in vitro suggested that the polysaccharides had good antioxidant effect, especially scavenging activity for hydroxyl radical and DPPH radical, which indicated that the polysaccharides from alfalfa may be explored as a novel natural antioxidant.

  3. Research Progress of Alfalfa Silage%苜蓿青贮研究进展

    Institute of Scientific and Technical Information of China (English)

    刘振宇; 玉柱; 智建飞; 谢楠; 秦文利; 冯伟; 刘忠宽

    2013-01-01

    As an important protein feed resources, alfalfa silage is of great significance for alfalfa industry and the healthy development of animal husbandry in China.In this paper, the research progress of development history and present situation of alfalfa silage, fermentation promotation, fermentation inhibiting and mixed silage were summarized, and the current main problems in alfalfa silage industry development and future research directions were put forward, in order to provide theoretical and practical references for the alfalfa silage research.%苜蓿作为一种重要的蛋白饲料资源,苜蓿青贮对我国苜蓿产业和畜牧业的健康发展具有重要意义。对苜蓿青贮发展历史与现状以及发酵促进、发酵抑制及混合青贮等研究进行了概述,提出了当前苜蓿青贮产业发展中存在的主要问题和今后的研究方向,以期为苜蓿青贮研究提供理论依据与实践参考。

  4. NERIES: Seismic Data Gateways and User Composed Datasets Metadata Management

    Science.gov (United States)

    Spinuso, Alessandro; Trani, Luca; Kamb, Linus; Frobert, Laurent

    2010-05-01

    One of the NERIES EC project main objectives is to establish and improve the networking of seismic waveform data exchange and access among four main data centers in Europe: INGV, GFZ, ORFEUS and IPGP. Besides the implementation of the data backbone, several investigations and developments have been conducted in order to offer to the users the data available from this network, either programmatically or interactively. One of the challenges is to understand how to enable users` activities such as discovering, aggregating, describing and sharing datasets to obtain a decrease in the replication of similar data queries towards the network, exempting the data centers to guess and create useful pre-packed products. We`ve started to transfer this task more and more towards the users community, where the users` composed data products could be extensively re-used. The main link to the data is represented by a centralized webservice (SeismoLink) acting like a single access point to the whole data network. Users can download either waveform data or seismic station inventories directly from their own software routines by connecting to this webservice, which routes the request to the data centers. The provenance of the data is maintained and transferred to the users in the form of URIs, that identify the dataset and implicitly refer to the data provider. SeismoLink, combined with other webservices (eg EMSC-QuakeML earthquakes catalog service), is used from a community gateway such as the NERIES web portal (http://www.seismicportal.eu). Here the user interacts with a map based portlet which allows the dynamic composition of a data product, binding seismic event`s parameters with a set of seismic stations. The requested data is collected by the back-end processes of the portal, preserved and offered to the user in a personal data cart, where metadata can be generated interactively on-demand. The metadata, expressed in RDF, can also be remotely ingested. They offer rating

  5. A Semantically Enabled Metadata Repository for Solar Irradiance Data Products

    Science.gov (United States)

    Wilson, A.; Cox, M.; Lindholm, D. M.; Nadiadi, I.; Traver, T.

    2014-12-01

    The Laboratory for Atmospheric and Space Physics, LASP, has been conducting research in Atmospheric and Space science for over 60 years, and providing the associated data products to the public. LASP has a long history, in particular, of making space-based measurements of the solar irradiance, which serves as crucial input to several areas of scientific research, including solar-terrestrial interactions, atmospheric, and climate. LISIRD, the LASP Interactive Solar Irradiance Data Center, serves these datasets to the public, including solar spectral irradiance (SSI) and total solar irradiance (TSI) data. The LASP extended metadata repository, LEMR, is a database of information about the datasets served by LASP, such as parameters, uncertainties, temporal and spectral ranges, current version, alerts, etc. It serves as the definitive, single source of truth for that information. The database is populated with information garnered via web forms and automated processes. Dataset owners keep the information current and verified for datasets under their purview. This information can be pulled dynamically for many purposes. Web sites such as LISIRD can include this information in web page content as it is rendered, ensuring users get current, accurate information. It can also be pulled to create metadata records in various metadata formats, such as SPASE (for heliophysics) and ISO 19115. Once these records are be made available to the appropriate registries, our data will be discoverable by users coming in via those organizations. The database is implemented as a RDF triplestore, a collection of instances of subject-object-predicate data entities identifiable with a URI. This capability coupled with SPARQL over HTTP read access enables semantic queries over the repository contents. To create the repository we leveraged VIVO, an open source semantic web application, to manage and create new ontologies and populate repository content. A variety of ontologies were used in

  6. Effect of aflatoxin B1 on in vitro ruminal fermentation of rations high in alfalfa hay or ryegrass hay

    DEFF Research Database (Denmark)

    Jiang, Y H; Yang, H J; Lund, Peter

    2012-01-01

    A 2 × 4 factorial experiment was conducted to determine the effect of aflatoxin B1 (AFB1) at dose rates of 0, 320, 640, 960 ng/ml on ruminal fermentation of substrates high in alfalfa hay (HA, alfalfa hay: maize meal = 4:1) and ryegrass hay (HR, ryegrass hay: maize meal = 4:1). In vitro dry matter...

  7. Effects of supplementation level and particle size of alfalfa hay on growth characteristics and rumen development in dairy calves

    NARCIS (Netherlands)

    Mirzaei, M.; Khorvash, M.; Ghorbani, G.R.; Kazemi-Bonchenari, M.; Riasi, A.; Nabipour, A.; Borne, van den J.J.G.C.

    2015-01-01

    The aim of this study was to assess the effects of particle size (PS) of alfalfa hay on growth characteristics and rumen development in dairy calves at two levels of alfalfa supplementation. Fifty newborn dairy calves (42.7 ± 2.2 kg BW) were used in a 2 × 2 factorial arrangement with the factors sup

  8. Alfalfa varieties differ markedly in seedling survival when interseeded into corn and treated with prohexadione-calcium

    Science.gov (United States)

    Interseeded alfalfa could serve as a dual purpose crop for providing groundcover during silage corn production and forage during subsequent years of production, but this system has been unworkable because competition between the co-planted crops often leads to stand failure of interseeded alfalfa. R...

  9. Effect of synthetic auxin herbicides on seed development and viability in genetically-engineered glyphosate-resistant alfalfa

    Science.gov (United States)

    Feral populations of cultivated crops have the potential to function as bridges and reservoirs that contribute to the unwanted movement of novel genetically engineered (GE) traits. Recognizing that feral alfalfa has the potential to lower genetic purity in alfalfa seed production fields when it is g...

  10. In vitro ruminal fermentation of treated alfalfa silage using ruminal inocula from high and low feed-efficient lactating cows

    Science.gov (United States)

    The objective was to assess the effect of two additives on alfalfa silage and on in vitro ruminal fermentation when using ruminal inocula prepared from high feed-efficient (HE) and low feed-efficient (LE) lactating cows. Second and third cut alfalfa was harvested at 40% bloom stage, treated with con...

  11. The genetic components of extended life expectancy in chilled, post-diapause quiescent Alfalfa Leafcutting Bees, Megachile rotundata

    Science.gov (United States)

    The alfalfa leafcutting bee, Megachile rotundata, a solitary bee native to Eurasia, is the world’s most intensively managed solitary bee and has become the primary pollinator for alfalfa seed production. These bees, when commercially managed, are overwintered as diapausing prepupae under static ther...

  12. Screening of Highly Effective Sinorhizobium meliloti Strains for 'Vector' Alfalfa and Testing of Its Competitive Nodulation Ability in the Field

    Institute of Scientific and Technical Information of China (English)

    ZENG Zhao-Hai; CHEN Wen-Xin; HU Yue-Gao; SUI Xin-Hua; CHEN Dan-Ming

    2007-01-01

    Seventeen Sinorhizobium meliloti strains from seven provinces in China were used to screen highly effective strains for alfalfa cultivar in a greenhouse study and their symbiotic relationship and competitive ability were studied in the field.CCBAU30138 was the most effective strain,as evidenced by increase in dry weights.A field experiment showed that the inoculation of alfalfa with CCBAU30138 resulted in increases of 11.9%and 19.6%of dry matter production and crude protein production,respectively,in forage of monocultured plants.The total dry matter yields of alfalfa and tall fescue in binary culture were increased by 16.3%by inoculation of alfalfa with this strain.These results showed that S.Meliloti strain CCBAU30138 was an effective inoculant both in the greenhouse and in the field.The analysis of randomly amplified polymorphic DNA(RAPD)by polymerase chain reaction(PCR)from nodule extracts showed that the strain CCBAU30138 had high competitiveness in the field.It occupied 47.5%of nodules in alfalfa monoculture and 44.4% of nodules in alfalfa-tall fescue binary culture after 20 weeks of growth.In conclusion,a simple system to select highly effective and competitive symbiotic strains specific to alfalfa was established.Using this system.A strain suitable for the alfalfa cultivar'Vector’grown in Wuqiao County of Hebei Province was obtained.

  13. Overexpression of a Cytosolic Ascorbate Peroxidase Gene, OsAPX2, Increases Salt Tolerance in Transgenic Alfalfa

    Institute of Scientific and Technical Information of China (English)

    ZHANG Qian; MA Cui; XUE Xin; XU Ming; LI Jing; WU Jin-xia

    2014-01-01

    Alfalfa (Medicago sativa L.) is an important forage crop in the world and it is of great signiifcance for the improvement of its salt tolerance. To improve salt tolerance in alfalfa, a rice ascorbate peroxidase gene (OsAPX2) was introduced into alfalfa using Agrobacterium tumefaciens-mediated transformation with marker gene bar. The different T-DNA insertions in T1 transgenic alfalfa were identiifed by Southern hybridization. Three independent T2 transgenic lines were selected for stress analysis and the results showed that all of them were salt tolerant compared with wild-type plants. The transgenic plants had low levels of H2O2, malondialdehyde and relative electrical conductivity under salt and drought stresses. Moreover, the contents of chlorophyll and proline, and APX activity were high in transgenic plants under salt and drought stresses. Taken together, the overexpression of OsAPX2 enhances salt tolerance in alfalfa through scavenging reactive oxygen species.

  14. THE QUALITY OF DATA AND METADATA IN A DATAWAREHOUSE

    Directory of Open Access Journals (Sweden)

    Carmen Răduţ

    2013-01-01

    Full Text Available The data quality is an important concept for the economic applications used in the process of analysis. The databases were revolutionized when they first started being used with large amountsof data. From this point on, an important process is represented by storing multidimensional data in datawarehouses, in order to be processed and analyzed with the purpose of obtaining information which can be used for decision making in various activities. Specialty studies show that most data is not useful for the purpose it has been collected because of both the lack of quality and incorrect techniques of manipulating this data. This study will try to offer a process of obtaining quality data in data archives and how to avoid quality anomalies inside metadata.

  15. Metadata and their impact on processes in Building Information Modeling

    Directory of Open Access Journals (Sweden)

    Vladimir Nyvlt

    2014-04-01

    Full Text Available Building Information Modeling (BIM itself contains huge potential, how to increase effectiveness of every project in its all life cycle. It means from initial investment plan through project and building-up activities to long-term usage and property maintenance and finally demolition. Knowledge Management or better say Knowledge Sharing covers two sets of tools, managerial and technological. Manager`s needs are real expectations and desires of final users in terms of how could they benefit from managing long-term projects, covering whole life cycle in terms of sparing investment money and other resources. Technology employed can help BIM processes to support and deliver these benefits to users. How to use this technology for data and metadata collection, storage and sharing, which processes may these new technologies deploy. We will touch how to cover optimized processes proposal for better and smooth support of knowledge sharing within project time-scale, and covering all its life cycle.

  16. Aggregation and Linking of Observational Metadata in the ADS

    CERN Document Server

    Accomazzi, Alberto; Henneken, Edwin A; Grant, Carolyn S; Thompson, Donna M; Chyla, Roman; Holachek, Alexandra; Elliott, Jonathan

    2016-01-01

    We discuss current efforts behind the curation of observing proposals, archive bibliographies, and data links in the NASA Astrophysics Data System (ADS). The primary data in the ADS is the bibliographic content from scholarly articles in Astronomy and Physics, which ADS aggregates from publishers, arXiv and conference proceeding sites. This core bibliographic information is then further enriched by ADS via the generation of citations and usage data, and through the aggregation of external resources from astronomy data archives and libraries. Important sources of such additional information are the metadata describing observing proposals and high level data products, which, once ingested in ADS, become easily discoverable and citeable by the science community. Bibliographic studies have shown that the integration of links between data archives and the ADS provides greater visibility to data products and increased citations to the literature associated with them.

  17. ARIADNE: a Tracking System for Relationships in LHCb Metadata

    CERN Document Server

    Shapoval, I; Cattaneo, M

    2014-01-01

    The data processing model of the LHCb experiment implies handling of an evolving set of heterogeneous metadata entities and relationships between them. The entities range from software and databases states to architecture specificators and software/data deployment locations. For instance, there is an important relationship between the LHCb Conditions Database (CondDB), which provides versioned, time dependent geometry and conditions data, and the LHCb software, which is the data processing applications (used for simulation, high level triggering, reconstruction and analysis of physics data). The evolution of CondDB and of the LHCb applications is a weakly-homomorphic process. It means that relationships between a CondDB state and LHCb application state may not be preserved across different database and application generations. These issues may lead to various kinds of problems in the LHCb production, varying from unexpected application crashes to incorrect data processing results. In this paper we present Ari...

  18. Accountable Metadata-Hiding Escrow: A Group Signature Case Study

    Directory of Open Access Journals (Sweden)

    Kohlweiss Markulf

    2015-06-01

    Full Text Available A common approach to demands for lawful access to encrypted data is to allow a trusted third party (TTP to gain access to private data. However, there is no way to verify that this trust is well placed as the TTP may open all messages indiscriminately. Moreover, existing approaches do not scale well when, in addition to the content of the conversation, one wishes to hide one’s identity. Given the importance of metadata this is a major problem. We propose a new approach in which users can retroactively verify cryptographically whether they were wiretapped. As a case study, we propose a new signature scheme that can act as an accountable replacement for group signatures, accountable forward and backward tracing signatures.

  19. QIS-XML: A metadata specification for Quantum Information Science

    CERN Document Server

    Heus, Pascal

    2007-01-01

    While Quantum Information Science (QIS) is still in its infancy, the ability for quantum based hardware or computers to communicate and integrate with their classical counterparts will be a major requirement towards their success. Little attention however has been paid to this aspect of QIS. To manage and exchange information between systems, today's classic Information Technology (IT) commonly uses the eXtensible Markup Language (XML) and its related tools. XML is composed of numerous specifications related to various fields of expertise. No such global specification however has been defined for quantum computers. QIS-XML is a proposed XML metadata specification for the description of fundamental components of QIS (gates & circuits) and a platform for the development of a hardware independent low level pseudo-code for quantum algorithms. This paper lays out the general characteristics of the QIS-XML specification and outlines practical applications through prototype use cases.

  20. OMICS studies: How about metadata checklist and data publications?

    Science.gov (United States)

    Kolker, Eugene; Stewart, Elizabeth

    2014-03-07

    Data fully utilized by the community resources promote progress rather than repetition. Effective data sharing can accelerate the transition from data to actionable knowledge, yet barriers to data sharing remain, both technological and procedural. The DELSA community has tackled the sharing barrier by creating a multi-omics metadata checklist for the life sciences. The checklist and associated data publication examples are now jointly published in Big Data and OMICS: A Journal of Integrative Biology. The checklist will enable diverse datasets to be easily harmonized and reused for richer analyses. It will facilitate data deposits, stand alone as a data publication, and grant appropriate credit to researchers. We invite the broader life sciences community to test the checklist for feedback and improvements.

  1. PROGRAM SYSTEM AND INFORMATION METADATA BANK OF TERTIARY PROTEIN STRUCTURES

    Directory of Open Access Journals (Sweden)

    T. A. Nikitin

    2013-01-01

    Full Text Available The article deals with the architecture of metadata storage model for check results of three-dimensional protein structures. Concept database model was built. The service and procedure of database update as well as data transformation algorithms for protein structures and their quality were presented. Most important information about entries and their submission forms to store, access, and delivery to users were highlighted. Software suite was developed for the implementation of functional tasks using Java programming language in the NetBeans v.7.0 environment and JQL to query and interact with the database JavaDB. The service was tested and results have shown system effectiveness while protein structures filtration.

  2. Arctic Data Explorer: A Rich Solr Powered Metadata Search Portal

    Science.gov (United States)

    Liu, M.; Truslove, I.; Yarmey, L.; Lopez, L.; Reed, S. A.; Brandt, M.

    2013-12-01

    The Advanced Cooperative Arctic Data and Information Service (ACADIS) manages data and is the gateway for all relevant Arctic physical, life, and social science data for the Arctic Sciences (ARC) research community. Arctic Data Explorer (ADE), developed by the National Snow and Ice Data Center (NSIDC) under the ACADIS umbrella, is a data portal that provides users the ability to search across multiple Arctic data catalogs rapidly and precisely. In order to help the users quickly find the data they are interested in, we provided a simple search interface -- a search box with spatial and temporal options. The core of the interface is a ';google-like' single search box with logic to handle complex queries behind the scenes. ACADIS collects all metadata through the GI-Cat metadata broker service and indexes it in Solr. The single search box is implemented as a text based search utilizing the powerful tools provided by Solr. In this poster, we briefly explain Solr's indexing and searching capabilities. Several examples are presented to illustrate the rich search functionality the simple search box supports. Then we dive into the implementation details such as how phrase query, wildcard query, range query, fuzzy query and special query search term handling was integrated into ADE search. To provide our users the most relevant answers to their queries as quickly as possible, we worked with the Advisory Committee and the expanding Arctic User Community (scientists and data experts) to collect feedback to improve the search results and adjust the relevance/ranking logic to return more precise search results. The poster has specific examples on how we tuned the relevance ranking to achieve higher quality search results. A feature in the plan is to provide data sets recommendations based on user's current search history. Both collaborative filtering and content-based approaches were considered and researched. A feasible solution is proposed based on the content-based approach.

  3. Phonion: Practical Protection of Metadata in Telephony Networks

    Directory of Open Access Journals (Sweden)

    Heuser Stephan

    2017-01-01

    Full Text Available The majority of people across the globe rely on telephony networks as their primary means of communication. As such, many of the most sensitive personal, corporate and government related communications pass through these systems every day. Unsurprisingly, such connections are subject to a wide range of attacks. Of increasing concern is the use of metadata contained in Call Detail Records (CDRs, which contain source, destination, start time and duration of a call. This information is potentially dangerous as the very act of two parties communicating can reveal significant details about their relationship and put them in the focus of targeted observation or surveillance, which is highly critical especially for journalists and activists. To address this problem, we develop the Phonion architecture to frustrate such attacks by separating call setup functions from call delivery. Specifically, Phonion allows users to preemptively establish call circuits across multiple providers and technologies before dialing into the circuit and does not require constant Internet connectivity. Since no single carrier can determine the ultimate destination of the call, it provides unlinkability for its users and helps them to avoid passive surveillance. We define and discuss a range of adversary classes and analyze why current obfuscation technologies fail to protect users against such metadata attacks. In our extensive evaluation we further analyze advanced anonymity technologies (e.g., VoIP over Tor, which do not preserve our functional requirements for high voice quality in the absence of constant broadband Internet connectivity and compatibility with landline and feature phones. Phonion is the first practical system to provide guarantees of unlinkable communication against a range of practical adversaries in telephony systems.

  4. Describing Geospatial Assets in the Web of Data: A Metadata Management Scenario

    Directory of Open Access Journals (Sweden)

    Cristiano Fugazza

    2016-12-01

    Full Text Available Metadata management is an essential enabling factor for geospatial assets because discovery, retrieval, and actual usage of the latter are tightly bound to the quality of these descriptions. Unfortunately, the multi-faceted landscape of metadata formats, requirements, and conventions makes it difficult to identify editing tools that can be easily tailored to the specificities of a given project, workgroup, and Community of Practice. Our solution is a template-driven metadata editing tool that can be customised to any XML-based schema. Its output is constituted by standards-compliant metadata records that also have a semantics-aware counterpart eliciting novel exploitation techniques. Moreover, external data sources can easily be plugged in to provide autocompletion functionalities on the basis of the data structures made available on the Web of Data. Beside presenting the essentials on customisation of the editor by means of two use cases, we extend the methodology to the whole life cycle of geospatial metadata. We demonstrate the novel capabilities enabled by RDF-based metadata representation with respect to traditional metadata management in the geospatial domain.

  5. Network Structure, Metadata, and the Prediction of Missing Nodes and Annotations

    Science.gov (United States)

    Hric, Darko; Peixoto, Tiago P.; Fortunato, Santo

    2016-07-01

    The empirical validation of community detection methods is often based on available annotations on the nodes that serve as putative indicators of the large-scale network structure. Most often, the suitability of the annotations as topological descriptors itself is not assessed, and without this it is not possible to ultimately distinguish between actual shortcomings of the community detection algorithms, on one hand, and the incompleteness, inaccuracy, or structured nature of the data annotations themselves, on the other. In this work, we present a principled method to access both aspects simultaneously. We construct a joint generative model for the data and metadata, and a nonparametric Bayesian framework to infer its parameters from annotated data sets. We assess the quality of the metadata not according to their direct alignment with the network communities, but rather in their capacity to predict the placement of edges in the network. We also show how this feature can be used to predict the connections to missing nodes when only the metadata are available, as well as predicting missing metadata. By investigating a wide range of data sets, we show that while there are seldom exact agreements between metadata tokens and the inferred data groups, the metadata are often informative of the network structure nevertheless, and can improve the prediction of missing nodes. This shows that the method uncovers meaningful patterns in both the data and metadata, without requiring or expecting a perfect agreement between the two.

  6. Foundations of a metadata repository for databases of registers and trials.

    Science.gov (United States)

    Stausberg, Jürgen; Löbe, Matthias; Verplancke, Philippe; Drepper, Johannes; Herre, Heinrich; Löffler, Markus

    2009-01-01

    The planning of case report forms (CRFs) in clinical trials or databases in registers is mostly an informal process starting from scratch involving domain experts, biometricians, and documentation specialists. The Telematikplattform für Medizinische Forschungsnetze, an umbrella organization for medical research in Germany, aims at supporting and improving this process with a metadata repository, covering the variables and value lists used in databases of registers and trials. The use cases for the metadata repository range from a specification of case report forms to the harmonization of variable collections, variables, and value lists through a formal review. The warehouse used for the storage of the metadata should at least fulfill the definition of part 3 "Registry metamodel and basic attributes" of ISO/IEC 11179 Information technology - Metadata registries. An implementation of the metadata repository should offer an import and export of metadata in the Operational Data Model standard of the Clinical Data Interchange Standards Consortium. It will facilitate the creation of CRFs and data models, improve the quality of CRFs and data models, support the harmonization of variables and value lists, and support the mapping of metadata and data.

  7. The Undergraduate ALFALFA Team: A Model for Involving Undergraduates in Large Astronomy Collaborations

    Science.gov (United States)

    Craig, David W.; Koopmann, Rebecca A.; Haynes, Martha P.; Undergraduate ALFALFA Team, ALFALFA Team

    2016-01-01

    The NSF-sponsored Undergraduate ALFALFA (Arecibo Legacy Fast ALFA) Team (UAT) has allowed faculty and students from a wide range of public and private colleges and especially those with small astronomy programs to learn how science is accomplished in a large collaboration while contributing to the scientific goals of a legacy radio astronomy survey. This effort has been made possible through the collaboration of the ALFALFA PIs and graduate students, Arecibo Observatory staff, and the faculty at 19 undergraduate-focussed institutions. In this talk, we will discuss how the UAT model works for the ALFALFA project and lessons learned from our efforts over the 8 years of grant funding. We will provide suggestions on how the model could be applied to other legacy projects, particularly in such areas as online collaboration and software usage by undergraduates. This work has been supported by NSF grants AST-0724918/0902211, AST-075267/0903394, AST-0725380, and AST-1211005.

  8. The Properties of Galaxies in Low Density Regions from the ALFALFA Survey

    CERN Document Server

    Toribio, M C

    2009-01-01

    Galaxies detected in the 21-cm line of neutral hydrogen (HI) from the on-going Arecibo Legacy Fast ALFA (ALFALFA) blind extragalactic HI survey have been cross-correlated with Sloan Digital Sky Survey Data Release 7 (Abazajian et al. 2009) in order to define a reference sample of HI content in regions of low galactic density. This observational sample will be used in the future to derive new standards of normal atomic gas content that allow a statistical investigation of the HI properties of galaxies in differing environments of the local universe. As a previous step, we compare here morphological indicators, like color or light concentration index, of ALFALFA detections and non-detections in low density regions. Our examination is extended also to a small data set of isolated galaxies. This kind of analysis is necessary in order to characterize as accurately as possible the type of galaxies that ALFALFA is detecting.

  9. The Properties of Galaxies in Low Density Regions from the ALFALFA Survey

    Science.gov (United States)

    Toribio, M. C.; Solanes, J. M.; Alfalfa Collaboration

    2010-10-01

    Galaxies detected in the 21-cm line of neutral hydrogen (H I) from the on-going Arecibo Legacy Fast ALFA (ALFALFA) blind extragalactic H I survey have been cross-correlated with Sloan Digital Sky Survey (SDSS) Data Release 7 (Abazajian et al. 2009) in order to define a reference sample of H I content in regions of low galactic density. This observational sample will be used in the future to derive new standards of normal atomic gas content that allow a statistical investigation of the H I properties of galaxies in differing environments of the local universe. As a previous step, we compare here morphological indicators, like color or light concentration index, of ALFALFA detections and non-detections in low density regions. Our examination is extended also to a small data set of isolated galaxies. This kind of analysis is necessary in order to characterize as accurately as possible the type of galaxies that ALFALFA is detecting.

  10. DEVELOPMENT OF A METADATA MANAGEMENT SYSTEM FOR AN INTERDISCIPLINARY RESEARCH PROJECT

    Directory of Open Access Journals (Sweden)

    C. Curdt

    2012-07-01

    Full Text Available In every interdisciplinary, long-term research project it is essential to manage and archive all heterogeneous research data, produced by the project participants during the project funding. This has to include sustainable storage, description with metadata, easy and secure provision, back up, and visualisation of all data. To ensure the accurate description of all project data with corresponding metadata, the design and implementation of a metadata management system is a significant duty. Thus, the sustainable use and search of all research results during and after the end of the project is particularly dependent on the implementation of a metadata management system. Therefore, this paper will describe the practical experiences gained during the development of a scientific research data management system (called the TR32DB including the corresponding metadata management system for the multidisciplinary research project Transregional Collaborative Research Centre 32 (CRC/TR32 'Patterns in Soil-Vegetation-Atmosphere Systems'. The entire system was developed according to the requirements of the funding agency, the user and project requirements, as well as according to recent standards and principles. The TR32DB is basically a combination of data storage, database, and web-interface. The metadata management system was designed, realized, and implemented to describe and access all project data via accurate metadata. Since the quantity and sort of descriptive metadata depends on the kind of data, a user-friendly multi-level approach was chosen to cover these requirements. Thus, the self-developed CRC/TR32 metadata framework is designed. It is a combination of general, CRC/TR32 specific, as well as data type specific properties.

  11. Effects of plant enzyme inactivation or sterilization on lipolysis and proteolysis in alfalfa silage.

    Science.gov (United States)

    Ding, W R; Long, R J; Guo, X S

    2013-04-01

    This experiment studied the contribution of plant enzymes and microbial activity on lipolysis and proteolysis in ensiled alfalfa. Before ensiling, the wilted alfalfa was treated with plant enzyme inactivation by autoclaving or with sterilization by γ-ray irradiation. The treated alfalfa was then inoculated with commercial lactic acid bacteria inoculants and ensiled for 40 d. Alfalfa without treatment was ensiled as the control. The content of total fatty acid (FA) after ensiling decreased 43% in the control silage and 28% in the γ-ray-treated silage, but did not change in the autoclave-treated silage. Among the major FA (C16:0, C18:2n-6, C18:3n-3), a considerable increase was observed in proportion of C16:0 in the control silage as compared with fresh alfalfa; conversely, decreases in proportions of C18:2n-6 and C18:3n-3 occurred during ensilage. Silage treated with γ-ray radiation at ensiling had a smaller proportion of C16:0 and greater proportions of C18:2n-6 and C18:3n-3 than control silage. Autoclave treatment further decreased proportions of C16:0 and most of the other FA, and increased C18:2n-6 and C18:3n-3 proportions in comparison with γ-ray treatment. Proportions of C16:0, C18:2n-6, C18:3n-3 and other detected FA (except for the proportion of C15:0) did not differ between fresh forage and autoclave-treated silage. Remarkably, smaller nonprotein nitrogen content was observed in the autoclave-treated silage compared with the γ ray-treated silage or the control silage. These results indicated that an extensive lipolysis occurred during ensiling of alfalfa, and plant enzymes played a major role in lipolysis and proteolysis.

  12. Assessing the Spatial Variability of Alfalfa Yield Using Satellite Imagery and Ground-Based Data

    Science.gov (United States)

    Kayad, Ahmed G.; Al-Gaadi, Khalid A.; Tola, ElKamil; Madugundu, Rangaswamy; Zeyada, Ahmed M.; Kalaitzidis, Chariton

    2016-01-01

    Understanding the temporal and spatial variability in a crop yield is viewed as one of the key steps in the implementation of precision agriculture practices. Therefore, a study on a center pivot irrigated 23.5 ha field in Saudi Arabia was conducted to assess the variability in alfalfa yield using Landsat-8 imagery and a hay yield monitor data. In addition, the study was designed to also explore the potential of predicting the alfalfa yield using vegetation indices. A calibrated yield monitor mounted on a large rectangular hay baler was used to measure the actual alfalfa yield for four alfalfa harvests performed in the period from October 2013 to May 2014. A total of 18 Landsat-8 images, representing different crop growth stages, were used to derive different vegetation indices (VIs). Data from the yield monitor was used to generate yield maps, which illustrated a definite spatial variation in alfalfa yield across the experimental field for the four studied harvests as indicated by the high spatial correlation values (0.75 to 0.97) and the low P-values (4.7E-103 to 8.9E-27). The yield monitor-measured alfalfa actual yield was compared to the predicted yield form the Vis. Results of the study showed that there was a correlation between actual and predicted yield. The highest correlations were observed between actual yield and the predicted using NIR reflectance, SAVI and NDVI with maximum correlation coefficients of 0.69, 0.68 and 0.63, respectively. PMID:27281189

  13. Effects of Cutting Time, Ensiling Duration and Microbial Additives on Chemical Composition of Alfalfa Silage

    Directory of Open Access Journals (Sweden)

    M.H. Delavar

    2012-09-01

    Full Text Available This experiment was conducted to assess the effects of daytime cutting management (p.m. vs. a.m. cut, ensiling duration and adding microbial inoculants on chemical composition of alfalfa silage. For this, Second growth Alfalfa harvested at the early bud stage of development after a sunny day at sundown (about 1900 h; PM alfalfa, whereas the second half was cut next day at sunup (about 0800 h; AM alfalfa. After cutting, alfalfa Forage was chopped by using a chopper to a length of 8 to10 cm, and then ensiled without or with microbial additive as factorial experiment (2×2 with repeated measurement design. Silages were provided in laboratory silos (6 repeats in every treatment lined with two layers of plastic, after air exclusion. Silos were opened at 3, 10 and 30 day for determination of pH and other chemical analysis. The numerically lower pH of PM vs. AM silages indicates that the former forage was more extensively fermented possibly because of its increased total non structural carbohydrate (TNC concentration. Shifting alfalfa harvesting from sun up to sundown significantly decreased NDF% and ADF%, because of the dilution effect associated with increased concentrations of TNC in the former forage. The NPN content and N-NH3 concentration of the silages treated in the afternoon was lower compared with AM group. CP content decreased, but NDF, ADF, NPN and N-NH3 concentration increased during ensiling time. Silage pH decreased by using of microbial additive and ensiling time. Dry matter and nitrogen losses were lower in silages treated by microbial inoculants, and, increased with increasing fermentation time. It can be concluded that microbial additives and time of cutting can be used as proper way to improve fermentation situation and silage quality.

  14. On the communication of scientific data: The Full-Metadata Format

    DEFF Research Database (Denmark)

    Riede, Moritz; Schueppel, Rico; Sylvester-Hvid, Kristian O.;

    2010-01-01

    In this paper, we introduce a scientific format for text-based data files, which facilitates storing and communicating tabular data sets. The so-called Full-Metadata Format builds on the widely used INI-standard and is based on four principles: readable self-documentation, flexible structure, fail......-safe compatibility, and searchability. As a consequence, all metadata required to interpret the tabular data are stored in the same file, allowing for the automated generation of publication-ready tables and graphs and the semantic searchability of data file collections. The Full-Metadata Format is introduced...

  15. Metadata registry and management system based on ISO 11179 for Cancer Clinical Trials Information System.

    Science.gov (United States)

    Park, Yu Rang; Kim, Ju Han

    2006-01-01

    Standardized management of data elements (DEs) for Case Report Form (CRF) is crucial in Clinical Trials Information System (CTIS). Traditional CTISs utilize organization-specific definitions and storage methods for Des and CRFs. We developed metadata-based DE management system for clinical trials, Clinical and Histopathological Metadata Registry (CHMR), using international standard for metadata registry (ISO 11179) for the management of cancer clinical trials information. CHMR was evaluated in cancer clinical trials with 1625 DEs extracted from the College of American Pathologists Cancer Protocols for 20 major cancers.

  16. Black Leaf and Stem of Alfalfa Caused by Phoma medicaginis Malbr & Roum. var. medicaginis Boerema

    Directory of Open Access Journals (Sweden)

    Latif R. Susuri

    2003-03-01

    Full Text Available Phoma medicaginis has recently been spreading on alfalfa causing black leaf and stem in irrigation fields near Prizren. The average number of lesions is from 18 up to 30 on leaves with an average diameter of 1-10 mm. The average size of pycnidia from diseased alfalfa leaves, stems and PDA is 325 x 338 μm, whereas the average size of pycnidiospores is 7.3 x 3.6 μm. Maximum spore production in average was on PDA 140.9 x 104/ml.

  17. Evaluación de 14 variedades de alfalfa con fertirriego en la Mixteca de Oaxaca

    OpenAIRE

    Joel Morales Ayala; José Luis Jiménez Victoria; Vicente Arturo Velasco Velasco; Yuri Villegas Aparicio; José Raymundo Enríquez del Valle; Alfonso Hernández Garay

    2006-01-01

    Se evaluaron 14 variedades de alfalfa con el sistema de fertirriego por goteo, con la finalidad de determinar la variedad de mayor rendimiento en materia seca, relación hoja:tallo y altura de planta, y la comparación de dos variedades de alfalfa mediante el sistema de riego por gravedad para evaluar el consumo de agua y energía eléctrica. El estudio se estableció en el Campo Experimental Mixteca Oaxaqueña, perteneciente al INIFAP, Yanhuitlán, Nochixtlán, Oaxaca. La siembra se realizó con una ...

  18. Evolutionary relationship of alfalfa mosaic virus with cucumber mosaic virus and brome mosaic virus

    OpenAIRE

    Savithri, HS; Murthy, MRN

    1983-01-01

    The amino acid sequences of the non-structural protein (molecular weight 35,000; 3a protein) from three plant viruses - cucumber mosaic, brome mosaic and alfalfa mosaic have been systematically compared using the partial genomic sequences for these three viruses already available. The 3a protein of cucumber mosaic virus has an amino acid sequence homology of 33.7% with the corresponding protein of brome mosaic virus. A similar protein from alfalfa mosaic virus has a homology of 18.2% and 14.2...

  19. The ANSS Station Information System: A Centralized Station Metadata Repository for Populating, Managing and Distributing Seismic Station Metadata

    Science.gov (United States)

    Thomas, V. I.; Yu, E.; Acharya, P.; Jaramillo, J.; Chowdhury, F.

    2015-12-01

    Maintaining and archiving accurate site metadata is critical for seismic network operations. The Advanced National Seismic System (ANSS) Station Information System (SIS) is a repository of seismic network field equipment, equipment response, and other site information. Currently, there are 187 different sensor models and 114 data-logger models in SIS. SIS has a web-based user interface that allows network operators to enter information about seismic equipment and assign response parameters to it. It allows users to log entries for sites, equipment, and data streams. Users can also track when equipment is installed, updated, and/or removed from sites. When seismic equipment configurations change for a site, SIS computes the overall gain of a data channel by combining the response parameters of the underlying hardware components. Users can then distribute this metadata in standardized formats such as FDSN StationXML or dataless SEED. One powerful advantage of SIS is that existing data in the repository can be leveraged: e.g., new instruments can be assigned response parameters from the Incorporated Research Institutions for Seismology (IRIS) Nominal Response Library (NRL), or from a similar instrument already in the inventory, thereby reducing the amount of time needed to determine parameters when new equipment (or models) are introduced into a network. SIS is also useful for managing field equipment that does not produce seismic data (eg power systems, telemetry devices or GPS receivers) and gives the network operator a comprehensive view of site field work. SIS allows users to generate field logs to document activities and inventory at sites. Thus, operators can also use SIS reporting capabilities to improve planning and maintenance of the network. Queries such as how many sensors of a certain model are installed or what pieces of equipment have active problem reports are just a few examples of the type of information that is available to SIS users.

  20. Evaluation of Selection Indices for Alfalfa (Medicago sativa L.

    Directory of Open Access Journals (Sweden)

    Hassan MONIRIFAR

    2010-03-01

    Full Text Available In order to evaluate the efficiency of selection indices in alfalfa improvement, an experiment was conducted from 2000 to 2007 at East Azarbaijan Agricultural and Natural Resources Research Center, Iran. A set of 29 native ecotypes, which were collected in 2000 and 2001 from Azerbaijan (Iran, together with one improved variety were used to conduct a polycross nursery. For the purpose of random mating, a randomized complete block design was used with 12 replications arranged in this nursery. The resulting 30 half-sib families were planted individually in pots and the 30 days old seedlings were transplanted to the field in May, 2004. Each 3-row plot consisted of 45 HS plants. Several traits, such as individual plants� fresh weight and individual plants� dry weight (IPFW, IPDW, number of shoots per plant (NS and plant height (PH in each harvest and also, days until 10% flowering, the ratio of fresh and dry weight of leaves/plant and size of trifoliate leaves were measured for three cropping seasons. The results of analysis of variance showed large variation among polycross progenies. Six selection indices (Ii with different number of traits at adult plant stage were evaluated. Based on the result of this investigation, if number of shoots and height of adult plant, excluding yield, are recorded, I2 is suggested. If, in addition to fresh yield, height of adult plant is measured, I6 is recommended. I4 is useful when number of shoots and plant height with dry yield are included in the index. In conclusion, the importance of mature plant traits in selection indices was in the order of yield > plant height > number of shoots. The results provided more evidence that selection indices incorporating the component of dry yield are more advantageous. The most efficient selection index consisted of NS, IPDW and PH, having a relative efficiency of 280%.

  1. Minimizing the time and cost of production of transgenic alfalfa libraries using the highly efficient completely sequenced vector pPZP200BAR.

    Science.gov (United States)

    Jozefkowicz, Cintia; Bottero, Emilia; Pascuan, Cecilia; Pagano, Elba; Ayub, Nicolás Daniel; Soto, Gabriela

    2016-09-01

    Alfalfa is the most important forage legume worldwide. However, similar to other minor forage crops, it is usually harvested along with weeds, which decrease its nutrient quality and thus reduce its high value in the market. In addition, weeds reduce alfalfa yield by about 50 %. Although weeds are the limiting factor for alfalfa production, little progress has been made in the incorporation of herbicide-tolerant traits into commercial alfalfa. This is partially due to the high times and costs needed for the production of vast numbers of transgenic alfalfa events as an empirical approach to bypass the random transgenic silencing and for the identification of an event with optimal transgene expression. In this focus article, we report the complete sequence of pPZP200BAR and the extremely high efficiency of this binary vector in alfalfa transformation, opening the way for rapid and inexpensive production of transgenic events for alfalfa improvement public programs.

  2. Positioning of Learners in Learning Networks with Content, Metadata and Ontologies

    NARCIS (Netherlands)

    Kalz, Marco; Van Bruggen, Jan; Rusman, Ellen; Giesbers, Bas; Koper, Rob

    2006-01-01

    Kalz, M, Van Bruggen, J., Rusmann, E., Giesbers, B., & Koper, R. (2007). Positioning of Learners in Learning Networks with Content-Analysis, Metadata and Ontologies. Interactive Learning Environments, 15, 191-200.

  3. Studies on Agricultural Scientific and Technical Information Core Metadata Register System

    Institute of Scientific and Technical Information of China (English)

    CUI Yun-peng; QIAN Ping; SUN Su-fen; ZHANG Jun-feng; LUO Chang-shou

    2008-01-01

    To construct the Agricultural Scientific and Technical Information Core Metadata(ASTICM)standard and its expanding principles,and to develop a register system based on ASTICM,the policy and methods of DC(Dublin Core)and SDBCM (Scientific Database Core Metadata)were studied.The construction of ASTICM has started from the proposed elements of the DCMI(Dublin Core Metadata Initiative),and has expanded the DC and SDBCM with related expanding principles.ASTICM finally includes 75 metadata elements,five expanded principles,and seven application profile creation methods.According to the requirement analysis of a large number of users of agricultural information,a register system based on ASTICM was developed.The ASTICM standard framework and its register system supported the search,sharing,integration exchange and other applications,effectively.

  4. Lattice QCD Data and Metadata Archives at Fermilab and the International Lattice Data Grid

    CERN Document Server

    Neilsen, E H; Simone, James

    2005-01-01

    The lattice gauge theory community produces large volumes of data. Because the data produced by completed computations form the basis for future work, the maintenance of archives of existing data and metadata describing the provenance, generation parameters, and derived characteristics of that data is essential not only as a reference, but also as a basis for future work. Development of these archives according to uniform standards both in the data and metadata formats provided and in the software interfaces to the component services could greatly simplify collaborations between institutions and enable the dissemination of meaningful results. This paper describes the progress made in the development of a set of such archives at the Fermilab lattice QCD facility. We are coordinating the development of the interfaces to these facilities and the formats of the data and metadata they provide with the efforts of the international lattice data grid (ILDG) metadata and middleware working groups, whose goals are to d...

  5. Linked Metadata - lightweight semantics for data integration (Invited)

    Science.gov (United States)

    Hendler, J. A.

    2013-12-01

    The "Linked Open Data" cloud (http://linkeddata.org) is currently used to show how the linking of datasets, supported by SPARQL endpoints, is creating a growing set of linked data assets. This linked data space has been growing rapidly, and the last version collected is estimated to have had over 35 billion 'triples.' As impressive as this may sound, there is an inherent flaw in the way the linked data story is conceived. The idea is that all of the data is represented in a linked format (generally RDF) and applications will essentially query this cloud and provide mashup capabilities between the various kinds of data that are found. The view of linking in the cloud is fairly simple -links are provided by either shared URIs or by URIs that are asserted to be owl:sameAs. This view of the linking, which primarily focuses on shared objects and subjects in RDF's subject-predicate-object representation, misses a critical aspect of Semantic Web technology. Given triples such as * A:person1 foaf:knows A:person2 * B:person3 foaf:knows B:person4 * C:person5 foaf:name 'John Doe' this view would not consider them linked (barring other assertions) even though they share a common vocabulary. In fact, we get significant clues that there are commonalities in these data items from the shared namespaces and predicates, even if the traditional 'graph' view of RDF doesn't appear to join on these. Thus, it is the linking of the data descriptions, whether as metadata or other vocabularies, that provides the linking in these cases. This observation is crucial to scientific data integration where the size of the datasets, or even the individual relationships within them, can be quite large. (Note that this is not restricted to scientific data - search engines, social networks, and massive multiuser games also create huge amounts of data.) To convert all the triples into RDF and provide individual links is often unnecessary, and is both time and space intensive. Those looking to do on the

  6. Increase phosphorus availability from the use of alfalfa (Medicago sativa L) green manure in rice (Oryza sativa L.) agroecosystem.

    Science.gov (United States)

    Gao, Xiaoye; Shi, Dongyan; Lv, Aimin; Wang, Shengyin; Yuan, Shili; Zhou, Peng; An, Yuan

    2016-11-11

    Alfalfa is a good green manure source, but its effect on rice growth has not been fully elucidated. Two green manure species, alfalfa and broad bean (Vicia faba L.), and two N fertilizer levels, alone or combination, were applied to a rice field. The results indicated that alfalfa had more pronounced effects on increasing soil labile phosphorus (P) fractions (including NaHCO3-Pi, NaOH-Pi), P uptake and soil enzyme activities (dehydrogenase, urease, acid phosphatase and β-glucosidase) than broad bean and N fertilizer. The transformation of NaHCO3-Po to labile P regulated by alfalfa played a significant direct and indirect effect on grain yield. Although a much lower N input from alfalfa addition, a similar grain yield with N fertilizer treatment was achieved, and the integration of alfalfa with N fertilizer produced the highest grain yield and P availability, which was associated with the highest urease, acid phosphatase and β-glucosidase activity in soil. These results indicate that alfalfa green manure had a great ability of increasing grain yield through enhancing P availability in rice paddy, which could give us a way to reduce N fertilizer application by enhancing P availability.

  7. Processed Methods of Alfalfa in Rainy Season%雨季苜蓿草加工的几种途径

    Institute of Scientific and Technical Information of China (English)

    向金城; 曹致中; 仇亨

    2014-01-01

    针对苜蓿草在雨季容易发霉腐烂的问题,笔者提出了青贮、烘干、榨汁后烘干及汁液提取叶蛋白等可行的加工贮存途径。青贮中不论是否添加玉米粉、乳酸、乙酸及乳酸菌接种剂,只要晾晒至半干(含水量50%~60%)铡碎、压紧、隔绝空气,进行半干青贮,都能获得优质青贮苜蓿。%Feasible approaches to preventing alfalfa from decaying during wet seasons were proposed. These approaches include making alfalfa silage, making alfalfa hay and making hay after the juice in alfalfa is extracted. The extracted juice from alfalfa is used to make leaf proteins. When making the alfalfa silage, it is not important whether corn lfour, lactic acid, acetic acid or lactic acid bacteria inoculant are added in the raw materials, as long as alfalfa foliage is pre-dried ( 50%~60%water content), ifnely chopped and ifrmly pressed (to remove air), the high quality foliage/semi-foliage can always be achieved.

  8. Increase phosphorus availability from the use of alfalfa (Medicago sativa L) green manure in rice (Oryza sativa L.) agroecosystem

    Science.gov (United States)

    Gao, Xiaoye; Shi, Dongyan; Lv, Aimin; Wang, Shengyin; Yuan, Shili; Zhou, Peng; An, Yuan

    2016-01-01

    Alfalfa is a good green manure source, but its effect on rice growth has not been fully elucidated. Two green manure species, alfalfa and broad bean (Vicia faba L.), and two N fertilizer levels, alone or combination, were applied to a rice field. The results indicated that alfalfa had more pronounced effects on increasing soil labile phosphorus (P) fractions (including NaHCO3-Pi, NaOH-Pi), P uptake and soil enzyme activities (dehydrogenase, urease, acid phosphatase and β-glucosidase) than broad bean and N fertilizer. The transformation of NaHCO3-Po to labile P regulated by alfalfa played a significant direct and indirect effect on grain yield. Although a much lower N input from alfalfa addition, a similar grain yield with N fertilizer treatment was achieved, and the integration of alfalfa with N fertilizer produced the highest grain yield and P availability, which was associated with the highest urease, acid phosphatase and β-glucosidase activity in soil. These results indicate that alfalfa green manure had a great ability of increasing grain yield through enhancing P availability in rice paddy, which could give us a way to reduce N fertilizer application by enhancing P availability. PMID:27833163

  9. Fixed-precision sequential sampling plans for estimating alfalfa caterpillar, Colias lesbia, egg density in alfalfa, Medicago sativa, fields in Córdoba, Argentina.

    Science.gov (United States)

    Serra, Gerardo V; Porta, Norma C La; Avalos, Susana; Mazzuferi, Vilma

    2013-01-01

    The alfalfa caterpillar, Colias lesbia (Fabricius) (Lepidoptera: Pieridae), is a major pest of alfalfa, Medicago sativa L. (Fabales: Fabaceae), crops in Argentina. Its management is based mainly on chemical control of larvae whenever the larvae exceed the action threshold. To develop and validate fixed-precision sequential sampling plans, an intensive sampling programme for C. lesbia eggs was carried out in two alfalfa plots located in the Province of Córdoba, Argentina, from 1999 to 2002. Using Resampling for Validation of Sampling Plans software, 12 additional independent data sets were used to validate the sequential sampling plan with precision levels of 0.10 and 0.25 (SE/mean), respectively. For a range of mean densities of 0.10 to 8.35 eggs/sample, an average sample size of only 27 and 26 sample units was required to achieve a desired precision level of 0.25 for the sampling plans of Green and Kuno, respectively. As the precision level was increased to 0.10, average sample size increased to 161 and 157 sample units for the sampling plans of Green and Kuno, respectively. We recommend using Green's sequential sampling plan because it is less sensitive to changes in egg density. These sampling plans are a valuable tool for researchers to study population dynamics and to evaluate integrated pest management strategies.

  10. Structuring Business Metadata in Data Warehouse Systems for Effective Business Support

    OpenAIRE

    Sarda, N L

    2001-01-01

    Large organizations today are being served by different types of data processing and informations systems, ranging from the operational (OLTP) systems, data warehouse systems, to data mining and business intelligence applications. It is important to create an integrated repository of what these systems contain and do in order to use them collectively and effectively. The repository contains metadata of source systems, data warehouse, and also the business metadata. Decision support and busine...

  11. Automated Metadata in Multimedia Information Systems Creation, Refinement, Use in Surrogates, and Evaluation

    CERN Document Server

    Christel, Michael

    2009-01-01

    Improvements in network bandwidth along with dramatic drops in digital storage and processing costs have resulted in the explosive growth of multimedia (combinations of text, image, audio, and video) resources on the Internet and in digital repositories. A suite of computer technologies delivering speech, image, and natural language understanding can automatically derive descriptive metadata for such resources. Difficulties for end users ensue, however, with the tremendous volume and varying quality of automated metadata for multimedia information systems. This lecture surveys automatic metada

  12. Unique in the shopping mall: On the reidentifiability of credit card metadata

    DEFF Research Database (Denmark)

    de Montjoye, Yves-Alexandre; Radaelli, Laura; Singh, Vivek Kumar

    2015-01-01

    Large-scale data sets of human behavior have the potential to fundamentally transform the way we fight diseases, design cities, or perform research. Metadata, however, contain sensitive information. Understanding the privacy of these data sets is key to their broad use and, ultimately, their impa...... sets that provide coarse information at any or all of the dimensions provide little anonymity and that women are more reidentifiable than men in credit card metadata....

  13. Deploying the ATLAS Metadata Interface (AMI) on the cloud with Jenkins.

    CERN Document Server

    Lambert, Fabian; The ATLAS collaboration

    2016-01-01

    The ATLAS Metadata Interface (AMI) is a mature application of more than 15 years of existence. Mainly used by the ATLAS experiment at CERN, it consists of a very generic tool ecosystem for metadata aggregation and cataloguing. AMI is used by the ATLAS production system, therefore the service must guarantee a high level of availability. We describe our monitoring and administration systems and the Jenkins-based strategy used to dynamically test and deploy cloud OpenStack nodes on demand.

  14. Why can't I manage my digital images like MP3s? The evolution and intent of multimedia metadata

    Science.gov (United States)

    Goodrum, Abby; Howison, James

    2005-01-01

    This paper considers the deceptively simple question: Why can't digital images be managed in the simple and effective manner in which digital music files are managed? We make the case that the answer is different treatments of metadata in different domains with different goals. A central difference between the two formats stems from the fact that digital music metadata lookup services are collaborative and automate the movement from a digital file to the appropriate metadata, while image metadata services do not. To understand why this difference exists we examine the divergent evolution of metadata standards for digital music and digital images and observed that the processes differ in interesting ways according to their intent. Specifically music metadata was developed primarily for personal file management and community resource sharing, while the focus of image metadata has largely been on information retrieval. We argue that lessons from MP3 metadata can assist individuals facing their growing personal image management challenges. Our focus therefore is not on metadata for cultural heritage institutions or the publishing industry, it is limited to the personal libraries growing on our hard-drives. This bottom-up approach to file management combined with p2p distribution radically altered the music landscape. Might such an approach have a similar impact on image publishing? This paper outlines plans for improving the personal management of digital images-doing image metadata and file management the MP3 way-and considers the likelihood of success.

  15. Proteomic analysis of salt and osmotic-drought stress in alfalfa seedlings

    Institute of Scientific and Technical Information of China (English)

    MA Qiao-li; KANG Jun-mei; LONG Rui-cai; CUI Yan-jun; ZHANG Tie-jun; XIONG Jun-bo; YANG Qing-chuan; SUN Yan

    2016-01-01

    Alfalfa is widely grown and is one of the most important forage crops in the world, but its growth and biomass production are markedly reduced under salt and drought stress, particularly during the early seedling stage. To identify the mecha-nisms behind salt and drought responsiveness at the alfalfa seedling stage, the proteins expressed were analyzed under no-treatment, 200 mol L–1 NaCl and 180 g L–1 PEG treatment conditions during the seedling stage. Out of more than 800 protein spots detected on two-dimensional electrophoresis (2-DE) gels, 35 proteins showed statisticaly signiifcant responses (P<0.05) to NaCl and PEG stress, which were selected for tandem mass spectrometric identiifcation, owing to their good resolution and abundance levels, and 32 proteins were positively identiifed. The identiifed proteins were divided into seven functional categories: photosynthetic metabolism, protein biosynthesis, folding and assembly, carbohydrate metabolism-associated proteins, stress defense related protein, metabolism of nucleic acid, other function categories and unknown proteins. Our results suggested that these proteins may play roles in alfalfa adaptation to salt and drought stress. Further study of these proteins wil provide insights into the molecular mechanisms of abiotic stress and the discovery of new candidate markers in alfalfa.

  16. Potato leafhopper (Hemiptera: Cicadellidae) ecology and integrated pest management focused on alfalfa

    Science.gov (United States)

    Knowledge to date on biology of the potato leafhopper, Empoasca fabae (Harris), is summarized, including geographic distribution, development, migration, agricultural host plants, and the mechanism of injury to host plants. Damage to alfalfa, potato, soybean and snap bean, as well as treatment guide...

  17. Population Dynamics of Empoasca fabae (Hemiptera: Cicadellidae) in Central Iowa Alfalfa Fields.

    Science.gov (United States)

    Weiser Erlandson, L A; Obrycki, J J

    2015-01-01

    Adults and nymphs of Empoasca fabae Harris (Hemiptera: Cicadellidae) and adults of predatory species in the families Coccinellidae, Anthocoridae, Nabidae, Chrysopidae, and Hemerobiidae were sampled in Iowa alfalfa fields from June to September in 1999 and 2000. The relationship between each predatory taxa and E. fabae was examined using regression analysis. In 2000, all predators were found to be positively correlated with the presence of E. fabae during all periods sampled and most likely contributed to mortality. Orius insidiosus (Say) (Hemiptera: Anthoridae) was the most numerous insect predatory species; population numbers ranged from 0 to 1 and 0.1 to 3.7 adults per 0.25 m(2) in 1999 and 2000, respectively. Partial life tables were constructed for E. fabae nymphs for two alfalfa-growing periods. Nymphs were grouped into three age intervals: first and second, third and fourth, and fifth instars. For the first alfalfa growing period examined, E. fabae nymphal mortality was 70% in 1999 and 49% in 2000. During the last growing period of each season (August-September), total nymphal mortality was relatively low (<25%). Adult E. fabae density ranged from 5.4 to 25.6 and 1.4-9.2 per 0.25 m(2) in 1999 and 2000, respectively. E. fabae population peaks were similar for each age interval in all growing periods. This study provides further information on the population dynamics of E. fabae and its relationship with select predatory species in Iowa alfalfa fields.

  18. Growth environment, harvest management and germplasm impacts on potential ethanol and crude protein yield in alfalfa

    Science.gov (United States)

    An alfalfa (Medicago sativa L) biomass energy production system would produce two products. Leaves would be separated from stems to produce a high protein feed for livestock and stems would be processed to produce ethanol. Therefore, maximum yields of both leaves and stems are essential for profitab...

  19. Efficacy of a BVDV subunit vaccine produced in alfalfa transgenic plants.

    Science.gov (United States)

    Peréz Aguirreburualde, María Sol; Gómez, María Cristina; Ostachuk, Agustín; Wolman, Federico; Albanesi, Guillermo; Pecora, Andrea; Odeon, Anselmo; Ardila, Fernando; Escribano, José M; Dus Santos, María José; Wigdorovitz, Andrés

    2013-02-15

    Bovine viral diarrhea virus (BVDV) is considered an important cause of economic loss within bovine herds worldwide. In Argentina, only the use of inactivated vaccines is allowed, however, the efficacy of inactivated BVDV vaccines is variable due to its low immunogenicity. The use of recombinant subunit vaccines has been proposed as an alternative to overcome this difficulty. Different studies on protection against BVDV infection have focused the E2 protein, supporting its putative use in subunit vaccines. Utilization of transgenic plants expressing recombinant antigens for the formulation of experimental vaccines represents an innovative and cost effective alternative to the classical fermentation systems. The aim of this work was to develop transgenic alfalfa plants (Medicago sativa, L.) expressing a truncated version of the structural protein E2 from BVDV fused to a molecule named APCH, that target to antigen presenting cells (APCH-tE2). The concentration of recombinant APCH-tE2 in alfalfa leaves was 1 μg/g at fresh weight and its expression remained stable after vegetative propagation. A methodology based an aqueous two phases system was standardized for concentration and partial purification of APCH-tE2 from alfalfa. Guinea pigs parentally immunized with leaf extracts developed high titers of neutralizing antibodies. In bovine, the APCH-tE2 subunit vaccine was able to induce BVDV-specific neutralizing antibodies. After challenge, bovines inoculated with 3 μg of APCH-tE2 produced in alfalfa transgenic plants showed complete virological protection.

  20. Crop mergers: Management of soil contamination and leaf loss in alfalfa

    Science.gov (United States)

    Maximizing the capacity and subsequent efficiency of the forage harvester necessitates consolidation (raking or merging) of alfalfa cuttings. Although rotary rakes are in wide use, the use of continuous pickup belt mergers is increasing in the Midwestern U.S. Previous work on crop consolidation is l...

  1. Draft Genome Sequence of Pseudomonas syringae pv. syringae ALF3 Isolated from Alfalfa.

    Science.gov (United States)

    Harrison, James; Dornbusch, Melinda R; Samac, Deborah; Studholme, David J

    2016-02-11

    We report here the annotated draft genome sequence of Pseudomonas syringae pv. syringae strain ALF3, isolated in Wyoming. A comparison of this genome sequence with those of closely related strains of P. syringae adapted to other hosts will facilitate research into interactions between this pathogen and alfalfa.

  2. USDA-ARS Plant Science Research Unit, St. Paul Alfalfa/Forage Research Program

    Science.gov (United States)

    The Plant Science Research Unit (PSRU) located at the University of Minnesota in St. Paul receives approximately $1.5 million to fund the research of six scientists who direct their research efforts toward developing new uses and improved traits for alfalfa. Our overarching goal is to develop alfalf...

  3. Uptake of oxytetracycline and its phytotoxicity to alfalfa (Medicago sativa L.)

    Energy Technology Data Exchange (ETDEWEB)

    Kong, W.D. [Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085 (China); Zhu, Y.G. [Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085 (China)]. E-mail: ygzhu@rcees.ac.cn; Liang, Y.C. [Ministry of Agriculture Key Laboratory of Plant Nutrition and Nutrient Cycling, Institute of Soils and Fertilizers, Chinese Academy of Agricultural Sciences, Beijing 100081 (China); Zhang, J. [Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085 (China); Smith, F.A. [Soil and Land Systems, School of Earth and Environmental Sciences, University of Adelaide, DP 636, Adelaide, SA 5005 (Australia); Yang, M. [Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085 (China)

    2007-05-15

    A series of experiments were conducted in a hydroponic system to investigate the uptake of oxytetracycline (OTC) and its toxicity to alfalfa (Medicago sativa L.). OTC inhibited alfalfa shoot and root growth by up to 61% and 85%, respectively. The kinetics of OTC uptake could be well described by Michaelis-Menten equation with V {sub max} of 2.25 {mu}mol g{sup -1} fresh weight h{sup -1}, and K {sub m} of 0.036 mM. The uptake of OTC by alfalfa was strongly inhibited by the metabolic inhibitor, 2,4-DNP (2,4-dinitrophenol), at pH 3.5 and 6.0, but not by the aquaporin competitors, glycerol and Ag{sup +}. OTC uptake, however, was significantly inhibited by Hg{sup 2+}, suggesting that the inhibition of influx was due to general cellular stress rather than the specific action of Hg{sup 2+} on aquaporins. Results from the present study suggested that OTC uptake into alfalfa is an energy-dependent process. - Plant uptake of antibiotic oxytetracycline is energy-dependent.

  4. Selective lignin downregulation leads to constitutive defense response expression in alfalfa (Medicago sativa L.).

    Science.gov (United States)

    Gallego-Giraldo, Lina; Jikumaru, Yusuke; Kamiya, Yuji; Tang, Yuhong; Dixon, Richard A

    2011-05-01

    • Downregulation of hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase (HCT) in alfalfa (Medicago sativa) reduces lignin levels and improves forage quality and saccharification efficiency for bioethanol production. However, the plants have reduced stature. It was previously reported that HCT-down-regulated Arabidopsis have impaired auxin transport, but this has recently been disproved. • To address the basis for the phenotypes of lignin-modified alfalfa, we measured auxin transport, profiled a range of metabolites including flavonoids and hormones, and performed in depth transcriptome analyses. • Auxin transport is unaffected in HCT antisense alfalfa despite increased flavonoid biosynthesis. The plants show increased cytokinin and reduced auxin levels, and gibberellin levels and sensitivity are both reduced. Levels of salicylic, jasmonic and abscisic acids are elevated, associated with massive upregulation of pathogenesis and abiotic stress-related genes and enhanced tolerance to fungal infection and drought. • We suggest that HCT downregulated alfalfa plants exhibit constitutive activation of defense responses, triggered by release of bioactive cell wall fragments and production of hydrogen peroxide as a result of impaired secondary cell wall integrity.

  5. Incorporation of p-coumarates into the cell walls of alfalfa changes the lignin composition

    Science.gov (United States)

    In general, monocots can contain a significant amount of an ester-linked p-coumarate (pCA) in their cell walls, but its function is unclear. One hypothesis is that pCA aids in the formation of syringyl-rich regions during lignification. Alfalfa (Medicago sativa), a dicot, is a cultivated perennial f...

  6. Canopy visible and near-infrared reflectance data to estimate alfalfa nutritive attributes before harvest

    Science.gov (United States)

    Proximal sensing could help improve profit margins by timing the cutting or harvesting of alfalfa (Medicago sativa L.), in rapid assessment of nutritive values, such as total nitrogen (N), neutral detergent fiber (NDF), and acid detergent fiber (ADF) as well as nutritive quality indicators such as r...

  7. Best Phd thesis Prize: Statistical analysis of ALFALFA galaxies: insights in galaxy

    NARCIS (Netherlands)

    Papastergis, E.

    2013-01-01

    We use the rich dataset of local universe galaxies detected by the ALFALFA 21cm survey to study the statistical properties of gas-bearing galaxies. In particular, we measure the number density of galaxies as a function of their baryonic mass ("baryonic mass function") and rotational velocity ("veloc

  8. Development of simple sequence repeat markers and diversity analysis in alfalfa (Medicago sativa L.).

    Science.gov (United States)

    Wang, Zan; Yan, Hongwei; Fu, Xinnian; Li, Xuehui; Gao, Hongwen

    2013-04-01

    Efficient and robust molecular markers are essential for molecular breeding in plant. Compared to dominant and bi-allelic markers, multiple alleles of simple sequence repeat (SSR) markers are particularly informative and superior in genetic linkage map and QTL mapping in autotetraploid species like alfalfa. The objective of this study was to enrich SSR markers directly from alfalfa expressed sequence tags (ESTs). A total of 12,371 alfalfa ESTs were retrieved from the National Center for Biotechnology Information. Total 774 SSR-containing ESTs were identified from 716 ESTs. On average, one SSR was found per 7.7 kb of EST sequences. Tri-nucleotide repeats (48.8 %) was the most abundant motif type, followed by di-(26.1 %), tetra-(11.5 %), penta-(9.7 %), and hexanucleotide (3.9 %). One hundred EST-SSR primer pairs were successfully designed and 29 exhibited polymorphism among 28 alfalfa accessions. The allele number per marker ranged from two to 21 with an average of 6.8. The PIC values ranged from 0.195 to 0.896 with an average of 0.608, indicating a high level of polymorphism of the EST-SSR markers. Based on the 29 EST-SSR markers, assessment of genetic diversity was conducted and found that Medicago sativa ssp. sativa was clearly different from the other subspecies. The high transferability of those EST-SSR markers was also found for relative species.

  9. Enhancing forage yields and soil conservation by interseeding alfalfa into silage corn

    Science.gov (United States)

    Recent field studies have identified prohexadione-calcium (PHD) as an effective plant growth regulator for enhancing the establishment of alfalfa interseeded into corn as a dual-purpose cover and forage crop. Foliar applications of PHD on seedlings doubled or tripled stand survival of interseeded al...

  10. Pythium and Fusarium species causing seed rot and damping-off of alfalfa

    Science.gov (United States)

    Seed rot and damping-off is an important disease of alfalfa, severely affecting stand establishment when conditions favor the disease. This disease may have been overlooked as a cause of poor stand establishment and reduced vigor of adult plants. Globally, 15 Pythium species have been found to cause...

  11. Alfalfa contains substantial 9-hydroperoxide lyase activity and a 3Z:2E-enal isomerase

    NARCIS (Netherlands)

    Vliegenthart, J.F.G.; Noordermeer, M.A.; Veldink, G.A.

    1999-01-01

    Fatty acid hydroperoxides formed by lipoxygenase can be cleaved by hydroperoxide lyase resulting in the formation of short-chain aldehydes and omega-oxo acids. Plant hydroperoxide lyases use 13- or 9-hydroperoxy linoleic and linolenic acid as substrates. Alfalfa (Medicago sativa L.) has been reporte

  12. The qualitative identification of different alfalfa breed in same forage series by the terahertz spectroscopy

    Science.gov (United States)

    Wang, Fang; Guo, Shuai

    2016-01-01

    In order to enriching the means of discriminating alfalfa and achieving the goal of nondestructive testing, terahertz time-domain spectroscopy (THz-TDS) was applied to explore and reveal the property characteristic of different alfalfa varieties in the same series. Six kinds of alfalfa were prepared for experiment and analysis, and these samples are classed as two series, namely caoyuan series and gannong series. In the result, the time-domain spectra were tested, and then the refractive indices and absorption coefficients was calculated, respectively. These spectrums showed an apparent difference between these two series, and to verify this classification, two statistical methods, partial least squares (PLS) and cluster analysis (CA), were performed to investigate. Finally, these methods yielded a classification result, and we found it classified gannong series and caoyuan series. All these result showed THz technology combined with statistical method can be an effective method for nondestructive identification of alfalfa breed with tiny different properties, and lay a foundation for establishing a forage database.

  13. (Almost) Dark Galaxies in the ALFALFA Survey: HI-bearing Ultra-Diffuse Galaxies, and Beyond

    Science.gov (United States)

    Leisman, Luke; Haynes, Martha P.; Giovanelli, Riccardo; ALFALFA Almost Darks Team

    2017-01-01

    Scaling relations between HI and stars in galaxies suggest strong ties between their atomic gas content and star formation laws. The Arecibo Legacy Fast ALFA (ALFALFA) blind extragalactic HI survey is well positioned to locate very low surface brightness sources that lie off these relations, the most extreme of which may fall below optical detection limits. Thus, the ALFALFA (Almost) Darks Project has been investigating extreme outliers from these relations by studying the ~1% of ALFALFA sources without apparent stellar counterparts in major optical surveys. We have obtained deep HI and optical imaging of 25 of these candidate "dark" sources. We find that most "dark" sources are not extreme "(almost) dark" galaxies. A few are rare OH Megamasers, redshifted into the ALFALFA bandpass, and many are part of large galactic plumes, stretching as far as 600 kpc from their host galaxy. However, a small handful of sources appear to be galaxies with extreme stellar systems. We find multiple systems with HI mass to stellar mass ratios an order of magnitude larger than typical gas rich dwarfs. Further, we find an isolated population of HI-bearing "ultra diffuse" galaxies (UDGs), with stellar masses of dwarfs, but HI and optical radii of L* galaxies. We suggest that these sources may be related to recently reported gas poor, quiescent UDGs.

  14. Screening of Cd tolerant genotypes and isolation of metallothionein genes in alfalfa (Medicago sativa L.).

    Science.gov (United States)

    Wang, Xiaojuan; Song, Yu; Ma, Yanhua; Zhuo, Renying; Jin, Liang

    2011-12-01

    In order to evaluate Cd tolerance in wide-ranging sources of alfalfa (Medicago sativa) and to identify Cd tolerant genotypes which may potentially be useful for restoring Cd-contaminated environments, thirty-six accessions of alfalfa were screened under hydroponic culture. Our results showed that the relative root growth rate varied from 0.48 to 1.0, which indicated that different alfalfa accessions had various responses to Cd stress. The candidate fragments derived from differentially expressed metallothionein (MT) genes were cloned from leaves of two Cd tolerant genotypes, YE and LZ. DNA sequence and the deduced protein sequence showed that MsMT2a and MsMT2b had high similarity to those in leguminous plants. DDRT-PCR analysis showed that MsMT2a expressed in both YE and LZ plants under control and Cd stress treatment, but MsMT2b only expressed under Cd stress treatment. This suggested that MsMT2a was universally expressed in leaves of alfalfa but expression of MsMT2b was Cadmium (Cd) inducible.

  15. Molybdate in Rhizobial Seed-Coat Formulations Improves the Production and Nodulation of Alfalfa.

    Science.gov (United States)

    Zhou, Jiqiong; Deng, Bo; Zhang, Yingjun; Cobb, Adam B; Zhang, Zhao

    2017-01-01

    Rhizobia-legume symbiosis is the most well researched biological nitrogen fixation system. Coating legume seeds with rhizobia is now a recognized practical measure for improving the production of legume corp. However, the efficacy of some commercial rhizobia inoculants cannot be guaranteed in China due to the low rate of live rhizobia in these products. A greenhouse experiment was conducted to assess the effects of different rhizobial inoculant formulations on alfalfa productivity and nitrogen fixation. Two rhizobia strains, (ACCC17631 and ACCC17676), that are effective partners with alfalfa variety Zhongmu No. 1 were assessed with different concentrations of ammonium molybdate in seed-coat formulations with two different coating adhesives. Our study showed that the growth, nodulation, and nitrogen fixation ability of the plants inoculated with the ACCC17631 rhizobial strain were greatest when the ammonium molybdate application was0.2% of the formulation. An ammonium molybdate concentration of 0.1% was most beneficial to the growth of the plants inoculated with the ACCC17676 rhizobial strain. The sodium carboxymethyl cellulose and sodium alginate, used as coating adhesives, did not have a significant effect on alfalfa biomass and nitrogen fixation. However, the addition of skimmed milk to the adhesive improved nitrogenase activity. These results demonstrate that a new rhizobial seed-coat formulation benefitted alfalfa nodulation and yield.

  16. Soil factors exhibit greater influence than bacterial inoculation on alfalfa growth and nitrogen fixation.

    Science.gov (United States)

    Neumann, Ute; Kosier, Bob; Jahnke, Joachim; Priefer, Ursula B; Al-Halbouni, Djamila

    2011-09-01

    In order to study the effects of soil factors and bacterial inoculation on alfalfa (Medicago sativa), plants were inoculated with Ensifer meliloti L33 and Azospirillum brasilense Sp7 in pot experiments using two different soils separately as well as in a mixture. One soil was contaminated with chemical waste products; the other was an arable soil. Soil factors, including the availability of macro- and micronutrients as well as carbon and nitrogen contents, were found to exhibit a much greater influence on the growth of alfalfa than any of the inoculations. In contaminated soil, the shoot and root growth of alfalfa was decreased and nodules were diminished and ineffective. Bacterial inoculations did not significantly improve this hostile growth environment. However, in a mixture (44% arable, 22% contaminated soil, 34% vermiculite), growth conditions for alfalfa were improved so that shoot dry weight and nodule numbers increased up to 100- and 20-fold, respectively, compared with the contaminated soil. For the strain L33, its persistence in the rhizosphere was correlated to the presence of its host plant, but its dynamics were influenced by competition with indigenous rhizobia. The strain Sp7, once provided with a suitable soil, was not dependent on the plant's rhizosphere, but it enhanced the performance of L33 and native rhizobia.

  17. Evaluation of subsurface drip irrigation design and management parameters for alfalfa

    NARCIS (Netherlands)

    Kandelous, M.M.; Kamai, T.; Vrugt, J.A.; Šimůnek, J.; Hanson, B.; Hopmans, J.W.

    2012-01-01

    Alfalfa is one of the most cultivated crops in the US, and is being used as livestock feed for the dairy, beef, and horse industries. About nine percent of that is grown in California, yet there is an increasing concern about the large amounts of irrigation water required to attain maximum yield. We

  18. Effects of wrapping time delays on the nutritive value of baled alfalfa silages

    Science.gov (United States)

    Baled silages are an attractive forage conservation option, especially for small and mid-sized beef and dairy producers. Our objectives were to test the effects of delayed wrapping on the nutritive value of baled alfalfa silages on a pre- and post-storage basis. A secondary objective was to evaluate...

  19. Milk production response to feeding alfalfa silage inoculated with Lactobacillus plantarum

    Science.gov (United States)

    In mini-silo trials, silages treated with a Lactobacillus plantarum silage inoculant (Ecosyl, Yorkshire, UK) had increased in vitro rumen microbial biomass production compared to untreated. Our objective was to determine if alfalfa silage treated with this inoculant could produce a milk production r...

  20. Managing foliar and root rot diseases of alfalfa for improving yield and persistance

    Science.gov (United States)

    Resistance to the six most common diseases across the United States is available in modern alfalfa cultivars. However, several diseases are becoming increasing problems in many parts of the country. Recognizing these problems is the first step in using crop management strategies to minimize diseases...

  1. Application of grain baits to control common vole Microtus arvalis (Pallas, 1778 in alfalfa crops, Serbia

    Directory of Open Access Journals (Sweden)

    Jokić G.

    2012-01-01

    Full Text Available In order to compare the efficacies of conventional (cholecalciferol and bromadiolone and new (sodium selenite rodenticides, applied in the grain bait formulation on the whole-grain of wheat (Triticum aestivum and triticale (Triticasecale in alfalfa crops, experiments were conducted at two sites near Belgrade, Serbia, in the spring of 2009, using a standard EPPO method. The presence of rodent populations, their spatial distribution and density indices were evaluated by pretreatment census and rodenticide efficacy by counting active holes, 14 and 28 days after treatment. The average Microtus arvalis numbers of 158/ha and 184/ha were found to cause 7.4% and 9.6% alfalfa green biomass yield decreases, respectively. Twenty-eight days after treatment, the average efficacy of grain bait formulation (on wheat and triticale grains of sodium selenite and cholecalciferol was 81%, while bromadiolone which had a higher efficiency, 85%, in the control of the common vole in alfalfa crops. The analysis of variance (ANOVA showed that the origin of active substances, bases and associated interactions a.s x based on the efficacy-investigated grain baits did not have a statistically significant impact on the expression efficiency of the tested baits. Triticale grains can be used as carriers of active substances, sodium selenite, cholecalciferol or bromadiolone in preparation baits. Control of M. arvalis with the new rodenticide, sodium selenite, gave efficacy results about equal to that of cholecalciferol and bromadiolone and, therefore, provided a possible alternative rodenticide for vole control in alfalfa.

  2. Emergence, forage production, and ion relations of alfalfa in response to saline waters

    Science.gov (United States)

    Alfalfa (Medicago sativa L) is an important crop utilized in regions under irrigation commonly impacted by salinity. In this study we evaluate the effect of salinity, as a continual process, from emergence to mature plant growth in successive harvests. We studied emergence, biomass production, salt ...

  3. Estimation of the genetic diversity in tetraploid alfalfa populations based on RAPD markers for breeding purposes.

    Science.gov (United States)

    Nagl, Nevena; Taski-Ajdukovic, Ksenija; Barac, Goran; Baburski, Aleksandar; Seccareccia, Ivana; Milic, Dragan; Katic, Slobodan

    2011-01-01

    Alfalfa is an autotetraploid, allogamous and heterozygous forage legume, whose varieties are synthetic populations. Due to the complex nature of the species, information about genetic diversity of germplasm used in any alfalfa breeding program is most beneficial. The genetic diversity of five alfalfa varieties, involved in progeny tests at Institute of Field and Vegetable Crops, was characterized based on RAPD markers. A total of 60 primers were screened, out of which 17 were selected for the analysis of genetic diversity. A total of 156 polymorphic bands were generated, with 10.6 bands per primer. Number and percentage of polymorphic loci, effective number of alleles, expected heterozygosity and Shannon's information index were used to estimate genetic variation. Variety Zuzana had the highest values for all tested parameters, exhibiting the highest level of variation, whereas variety RSI 20 exhibited the lowest. Analysis of molecular variance (AMOVA) showed that 88.39% of the total genetic variation was attributed to intra-varietal variance. The cluster analysis for individual samples and varieties revealed differences in their population structures: variety Zuzana showed a very high level of genetic variation, Banat and Ghareh were divided in subpopulations, while Pecy and RSI 20 were relatively uniform. Ways of exploiting the investigated germplasm in the breeding programs are suggested in this paper, depending on their population structure and diversity. The RAPD analysis shows potential to be applied in analysis of parental populations in semi-hybrid alfalfa breeding program in both, development of new homogenous germplasm, and identification of promising, complementary germplasm.

  4. Fungi isolated from the initial industrial soil planted with a mixture of alfalfa and grasses

    Directory of Open Access Journals (Sweden)

    Maria Kowalik

    2014-08-01

    Full Text Available Research were conducted during the years 1988-1990 on the "Machów" industrial waste dump. It was determined, that a mixture of alfalfa with grasses. introduced as first culture on the raw substrate of industrial wastes. was helpful for the development of soil fungi communities.

  5. First report of Alfalfa mosaic virus infecting basil (Ocimum basilicum L.) in California.

    Science.gov (United States)

    Basil (Ocimum basilicum L.) plants collected from a field in Imperial County, CA in May, 2011 were found to exhibit yellowing, chlorotic sectors and spots on leaves, resulting in plants being unmarketable. Total nucleic acid was extracted from plants and tested by RT-PCR for the presence of Alfalfa...

  6. Photosynthate partitioning and nitrogen fixation of alfalfa and birdsfoot trefoil. [Lotus corniculatus L. ; Medicago sativa L

    Energy Technology Data Exchange (ETDEWEB)

    Shieh, W.J.

    1985-01-01

    Nodule mass and number are usually correlated with rates of nitrogen fixation in legumes. Birdsfoot trefoil (Lotus corniculatus L.) with more than twice the nodule number and mass, however, fixes far less nitrogen than alfalfa (Medicago sativa L.) at the same age. In this research, photosynthesis and photosynthate partitioning and utilization in relation to nitrogen fixation of alfalfa and birdsfoot trefoil were examined in order to determine their relationship to nitrogen fixation potential. Photosynthate to nodules was studied using /sup 14/CO/sub 2/ labeling techniques. Partitioning patterns were altered by shading and dark depletion treatments. Efficiency of photosynthate utilization was examined by determining turnover of /sup 14/C photosynthate in nodule metabolites and by studying rates of cyanide-resistant and cyanide-sensitive O/sub 2/ uptake. Alfalfa nodule activity was greater than trefoil expressed on a hole pot or nodule dry weight basis. Both shading and dark treatments significantly reduced nodule activity as estimated by the acetylene reduction assay. Shoots of both species were found to be the dominant sinks for photosynthate. Percentage /sup 14/C recovered in alfalfa roots was more than twice that of trefoil at 1,2,3,4 and 24 h after labeling. Greater relative specific radioactivity (RSA) in nodules of both species suggests that they were stronger sinks for current photosynthate than roots.

  7. Variable salinity responses of 12 alfalfa genotypes and comparative expression analyses of salt-response genes

    Science.gov (United States)

    Twelve alfalfa genotypes that were selected for biomass under salinity, differences in Na and Cl concentrations in shoots and K/Na ratio were evaluated in this long-term salinity experiment. The selected plants were cloned to reduce genetic variability within each genotype. Salt tolerance (ST) index...

  8. Evaluation of alfalfa (Medicago sativa L.) populations' response to salinity stress

    Science.gov (United States)

    Alfalfa is a moderately salt tolerant crop with high economic return, therefore more suitable for production with lower quality water than most high value crops. This study was conducted to examine the effects of the irrigation water salt type (ST=Cl- or SO4 2-) and five salinity levels (ECiw= 0.85,...

  9. Molybdate in Rhizobial Seed-Coat Formulations Improves the Production and Nodulation of Alfalfa

    Science.gov (United States)

    Zhou, Jiqiong; Deng, Bo; Zhang, Yingjun; Cobb, Adam B.; Zhang, Zhao

    2017-01-01

    Rhizobia-legume symbiosis is the most well researched biological nitrogen fixation system. Coating legume seeds with rhizobia is now a recognized practical measure for improving the production of legume corp. However, the efficacy of some commercial rhizobia inoculants cannot be guaranteed in China due to the low rate of live rhizobia in these products. A greenhouse experiment was conducted to assess the effects of different rhizobial inoculant formulations on alfalfa productivity and nitrogen fixation. Two rhizobia strains, (ACCC17631 and ACCC17676), that are effective partners with alfalfa variety Zhongmu No. 1 were assessed with different concentrations of ammonium molybdate in seed-coat formulations with two different coating adhesives. Our study showed that the growth, nodulation, and nitrogen fixation ability of the plants inoculated with the ACCC17631 rhizobial strain were greatest when the ammonium molybdate application was0.2% of the formulation. An ammonium molybdate concentration of 0.1% was most beneficial to the growth of the plants inoculated with the ACCC17676 rhizobial strain. The sodium carboxymethyl cellulose and sodium alginate, used as coating adhesives, did not have a significant effect on alfalfa biomass and nitrogen fixation. However, the addition of skimmed milk to the adhesive improved nitrogenase activity. These results demonstrate that a new rhizobial seed-coat formulation benefitted alfalfa nodulation and yield. PMID:28099471

  10. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa.

    Science.gov (United States)

    Wang, Zhi; Su, Guoxia; Li, Min; Ke, Qingbo; Kim, Soo Young; Li, Hongbing; Huang, Jin; Xu, Bingcheng; Deng, Xi-Ping; Kwak, Sang-Soo

    2016-12-01

    Arabidopsis ABSCISIC ACID-RESPONSIVE ELEMENT-BINDING FACTOR 3 (ABF3), a bZIP transcription factor, plays an important role in regulating multiple stress responses in plants. Overexpressing AtABF3 increases tolerance to various stresses in several plant species. Alfalfa (Medicago sativa L.), one of the most important perennial forage crops worldwide, has high yields, high nutritional value, and good palatability and is widely distributed in irrigated and semi-arid regions throughout the world. However, drought and salt stress pose major constraints to alfalfa production. In this study, we developed transgenic alfalfa plants (cv. Xinjiang Daye) expressing AtABF3 under the control of the sweetpotato oxidative stress-inducible SWPA2 promoter (referred to as SAF plants) via Agrobacterium tumefaciens-mediated transformation. After drought stress treatment, we selected two transgenic lines with high expression of AtABF3, SAF5 and SAF6, for further characterization. Under normal conditions, SAF plants showed smaller leaf size compared to non-transgenic (NT) plants, while no other morphological changes were observed. Moreover, SAF plants exhibited enhanced drought stress tolerance and better growth under drought stress treatment, which was accompanied by a reduced transpiration rate and lower reactive oxygen species contents. In addition, SAF plants showed an increased tolerance to salt and oxidative stress. Therefore, these transgenic AtABF3 alfalfa plants might be useful for breeding forage crops with enhanced tolerance to environmental stress for use in sustainable agriculture on marginal lands.

  11. Identification of Molecular Marker Linked to Salt Tolerance Gene in Alfalfa

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    The study has established the F2 offspring obtained by crossing salt-tolerant with salt-sensitive alfalfa, and appraised the salt-tolerant F2 offspring seedling was evaluated in pot culture. With the F2 segregated population, the research has obtained a molecular marker linked with salt-tolerant genes of alfalfa using the improved BSA combined with RAPD. The RAPD PCR products were excised from the agarose gel and purified using a kit, then were mixed with pMD-18T vector and sequenced. Sequencing result indicated the RAPD marker was 1 438 bp in length. Similarity researches using blast in Genbank indicated that the nucleotide sequence of the RAPD marker showed 93% and 91% similarity with mth2-6el8 gene fragment (347 bp) and mth2-33122 gene fragment (334 bp) of Medicago truncatula respectively. Medicago truncatula is a close relative of alfalfa and Mth2-6e18 is a molecular marker of the gene coding for a cysteine protease which was salt inducible in some plants. These results indicated the RAPD marker was possibly related to cysteine protease genes in alfalfa.

  12. Correlation of fermentation characteristics with intake and digestibility of alfalfa silage in gestating ewes

    Science.gov (United States)

    Baled silage production provides benefits to farmers because it reduces leaf losses, and requires a shorter wilting time, thereby limiting risks of exposure to rain compared with making hay. Our objective was to investigate the correlation of alfalfa silage fermentation parameters with intake and di...

  13. Induction of peroxidases and superoxide dismutases in transformed embryogenic calli of alfalfa (Medicago sativa L.)

    Science.gov (United States)

    Activities of peroxidase (POD) and superoxide dismutase (SOD) enzymes were analyzed in non-regenerative transformed embryogenic lines of alfalfa (Medicago sativa L.) carrying wound-inducible oryzacystatin I (OC-I), wound-inducible oryzacystatin I antisense (OC-Ias) or hygromycin phosphotransferase (...

  14. EDI – A Template-Driven Metadata Editor for Research Data

    Directory of Open Access Journals (Sweden)

    Fabio Pavesi

    2016-10-01

    Full Text Available EDI is a general purpose, template-driven metadata editor for creating XML-based descriptions. Originally aimed at defining rich and standard metadata for geospatial resources, It can be easily customised in order to comply with a broad range of schemata and domains. EDI creates HTML5 [9] metadata forms with advanced assisted editing capabilities and compiles them into XML files. The examples included in the distribution implement profiles of the ISO 19139 standard for geographic information [14], such as core INSPIRE metadata [10], as well as the OGC [8] standard for sensor description, SensorML [11]. Templates (the blueprints for a specific metadata format drive form behaviour by element data types and provide advanced features like codelists1 underlying combo boxes or autocompletion functionalities. Virtually, the editing of any metadata format can be supported by creating a specific template. EDI is stored on GitHub at https://github.com/SP7-Ritmare/EDI-NG_client and https://github.com/SP7-Ritmare/EDI-NG_server.

  15. Automating the Extraction of Metadata from Archaeological Data Using iRods Rules

    Directory of Open Access Journals (Sweden)

    David Walling

    2011-10-01

    Full Text Available The Texas Advanced Computing Center and the Institute for Classical Archaeology at the University of Texas at Austin developed a method that uses iRods rules and a Jython script to automate the extraction of metadata from digital archaeological data. The first step was to create a record-keeping system to classify the data. The record-keeping system employs file and directory hierarchy naming conventions designed specifically to maintain the relationship between the data objects and map the archaeological documentation process. The metadata implicit in the record-keeping system is automatically extracted upon ingest, combined with additional sources of metadata, and stored alongside the data in the iRods preservation environment. This method enables a more organized workflow for the researchers, helps them archive their data close to the moment of data creation, and avoids error prone manual metadata input. We describe the types of metadata extracted and provide technical details of the extraction process and storage of the data and metadata.

  16. [Natural nucleotide polymorphism of the Srlk gene that determines salt stress tolerance in alfalfa (Medicago sativa L)].

    Science.gov (United States)

    Vishnevskaia, M S; Pavlov, A V; Dziubenko, E A; Dziubenko, N I; Potokina, E K

    2014-04-01

    Based on legume genome syntheny, the nucleotide sequence of Srlk gene, key role of which in response to salt stress was demonstrated for the model species Medicago truncatula, was identified in the major forage and siderate crop alfalfa (Medicago sativa). In twelve alfalfa samples originating from regions with contrasting growing conditions, 19 SNPs were revealed in the Srlk gene. For two nonsynonymous SNPs, molecular markers were designed that could be further used to analyze the association between Srlk gene nucleotide polymorphism and the variability in salt stress tolerance among alfalfa cultivars.

  17. Teknik Migrasi Data Lintas DBMS dengan Menggunakan Metadata

    Directory of Open Access Journals (Sweden)

    Wahyu Hidayat

    2015-11-01

    Full Text Available Proses migrasi data biasanya dibutuhkan saat adanya perubahan sistem, format, atau tipe storage. Saat ini telah dikenal beberapa teknik dan kakas untuk melakukan migrasi data, misalnya CSV file, ODBC, SQLDump dan sebagainya. Sayangnya tidak semua teknik tersebut dapat diimplementasikan untuk migrasi data antara dua DBMS yang berbeda. Dalam penelitian ini dipaparkan sebuah teknik migrasi data yang dapat digunakan untuk migrasi data lintas DBMS. Teknik migrasi data yang dipaparkan memanfaatkan metadata yang ada di masing-masing DBMS. Proses migrasi data yang dipaparkan di sini melalui tiga tahap yaitu capture, convert dan construct. Sebuah prototype dibangun untuk menguji teknik migrasi data ini. Dengan menggunakan schema HR dilakukan uji coba migrasi data lintas DBMS antara Oracle dan MySQL. Dengan menggunakan teknik ini, migrasi data full-schema membutuhkan waktu rata-rata 20,43 detik dari DBMS Oracle ke MySQL dan 12,96 detik untuk skenario sebaliknya. Adapun untuk migrasi data parsial dibutuhkan waktu rata-rata 5,95 detik dari DBMS Oracle ke MySQL dan 2,19 detik untuk skenario sebaliknya.

  18. Metadata Technique with E-government for Malaysian Universities

    Directory of Open Access Journals (Sweden)

    Mohammed Abdulameer Mohammed

    2012-07-01

    Full Text Available The universities in Malaysia have made a good plan in their education layout to achieve the top educational rank. The goal is to make the Malaysian education in centre of the global map by enhancing the academic excellence; its one of 2020 plan in Malaysia that has been made by Mahathir Mohammad in 1991. That plan focuses on finance and banking, biotechnology, information and communication technology, information technology, multimedia content development, advanced and manufacturing. Recently in Malaysia there are more than 50 universities. All the public university has its own e-government application to give the staff online connection and to provide best service to people. But there is no sharing with other public universities. Therefore if there is plan will attain success in only one university, it wont be shared with others. In Universiti Sains Malaysia (USM they use APEX (Accelerated Program for Excellence that has been used in 2008. This idea was focused only on USM in Malaysia, because there is no sharing for knowledge between Malaysian universities. This paper creates a framework that uses data warehouse techniques such as metadata common warehouse to support the universities e-government. As such it increases sharing information among the universitys department itself and with other universities departments and gives better understanding which can reduce delay and strengthen the efficiency of sharing the information for government.

  19. Establishment of Kawasaki disease database based on metadata standard.

    Science.gov (United States)

    Park, Yu Rang; Kim, Jae-Jung; Yoon, Young Jo; Yoon, Young-Kwang; Koo, Ha Yeong; Hong, Young Mi; Jang, Gi Young; Shin, Soo-Yong; Lee, Jong-Keuk

    2016-07-01

    Kawasaki disease (KD) is a rare disease that occurs predominantly in infants and young children. To identify KD susceptibility genes and to develop a diagnostic test, a specific therapy, or prevention method, collecting KD patients' clinical and genomic data is one of the major issues. For this purpose, Kawasaki Disease Database (KDD) was developed based on the efforts of Korean Kawasaki Disease Genetics Consortium (KKDGC). KDD is a collection of 1292 clinical data and genomic samples of 1283 patients from 13 KKDGC-participating hospitals. Each sample contains the relevant clinical data, genomic DNA and plasma samples isolated from patients' blood, omics data and KD-associated genotype data. Clinical data was collected and saved using the common data elements based on the ISO/IEC 11179 metadata standard. Two genome-wide association study data of total 482 samples and whole exome sequencing data of 12 samples were also collected. In addition, KDD includes the rare cases of KD (16 cases with family history, 46 cases with recurrence, 119 cases with intravenous immunoglobulin non-responsiveness, and 52 cases with coronary artery aneurysm). As the first public database for KD, KDD can significantly facilitate KD studies. All data in KDD can be searchable and downloadable. KDD was implemented in PHP, MySQL and Apache, with all major browsers supported.Database URL: http://www.kawasakidisease.kr.

  20. Weed control in dormant alfalfa (Medicago sativa L. with active ingredients’ metribuzin, imazetapyr and pronamide

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    Zvonko Pacanoski

    2017-03-01

    Full Text Available Field trials were conducted during 2008 – 2010 to evaluate weed control in dormant alfalfa (Medicago sativa L. with metribuzin, imazetapyr and pronamide. The weed population in all experimental years was consisted mainly of annual winter and spring grass and broadleaf weeds, and some perennial weeds. The number of weed species and weed density increased with the years of alfalfa growing, from second to the fourth year. Weed density in the untreated control plots was 201.0, 217.2 and 240.5 plants per m2 in 2008, 2009 and 2010, respectively. The most dominant weeds were Anthemis cotula, Capsell bursa-pastoris and Taraxacum officinale in 2008, Alopecurus myosuroides and Poa pratensis in 2009 and Millium vernale and Arabidopsis thaliana in 2010. Efficacy of herbicides in control of weeds was ranged of 91.8% (pronamide to 98.4% (metribuzin 1.0 kg*ha-1 in 2008, 93.1% (imazetapyr to 97.3% (metribuzin 1.0 kg*ha-1 in 2009 and 92.1% (imazetapyr to 97.3% (metribuzin 1.0 kg*ha-1 in 2010, respectively. Efficacy of herbicides in control of prevailing weeds during the 3 years field trial period was ranged of 48.5% to 100.0%. No visual alfalfa injured was determined by any rates during the experimental period, and consequently, none of the applied herbicides reduced first-harvest alfalfa yields. Alfalfa yield was markedly affected by herbicide efficacy in all experimental years, particularly in the second year, where yields of herbicide treatments were similar to that of the weed free control.