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Sample records for alcaligenes

  1. Scleral buckle infection with Alcaligenes xylosoxidans

    Directory of Open Access Journals (Sweden)

    Chih-Kang Hsu

    2014-01-01

    Full Text Available We describe a rare case of extraocular inflammation secondary to scleral buckle infection with Alcaligenes xylosoxidans. A 60-year-old female with a history of retinal detachment repair with open-book technique of scleral buckling presented with purulent discharge and irritation in the right eye that had begun 4 weeks earlier and had been treated ineffectively at another hospital. Conjunctival erosion with exposure of the scleral buckle was noted. The scleral buckle was removed and cultured. The explanted material grew gram-negative rod later identified as A. xylosoxidans. On the basis of the susceptibility test results, the patient was treated by subconjunctival injection and fortified topical ceftazidime. After 4 weeks of treatment, the infection resolved.

  2. Proton NMR spectroscopy of cytochrome c-554 from Alcaligenes faecalis.

    Science.gov (United States)

    Timkovich, R; Cork, M S

    1984-02-28

    Cytochrome c-554 from the bacterium Alcaligenes faecalis (ATCC 8750) is a respiratory electron-transport protein homologous to other members of the cytochrome c family. Its structure has been studied by 1H NMR spectroscopy in both the ferric and ferrous states. The ferric spectrum is characterized by downfield hyperfine-shifted heme methyl resonances at 46.25, 43.60, 38.40, and 36.73 ppm (25 degrees C, pH 7.1). Chemical shifts of these resonances change with temperature opposite to expectations derived from Curie's law. The pH behavior of the hyperfine-shifted resonances titrates with a pK of 6.3 that has been interpreted as due to ionization of a heme propionate. In the ferrous state, heme methyl, meso, and thioether bridge resonances have been observed and assigned. All aromatic proteins have been assigned according to the side chain of origin, and the structural environment about the sole tryptophan residue has been examined. The electron-transfer rate between ferric and ferrous forms has been estimated to be on the order of 3 X 10(8) M-1 s-1, which is the largest such self-exchange rate yet observed for a cytochrome. PMID:6324856

  3. Purification and characterization of beta-glucosidase of Alcaligenes faecalis.

    Science.gov (United States)

    Han, Y W; Srinivasan, V R

    1969-12-01

    A cellobiose-utilizing bacterium isolated from sugar cane bagasse and identified as a strain of Alcaligenes faecalis (ATCC 21400) produced an inducible beta-glucoside-splitting enzyme. The enzyme was purified by a series of streptomycin and ammonium sulfate fractionations and by Sephadex and diethylaminoethyl column chromatography. The final preparation was purified 130-fold, with a recovery of about 10% of the initial enzyme activity. The enzyme had a wide pH range, with optimal activity at pH 6.0 to 7.0. The enzyme was stable in solution at pH 6.5 to 7.8 when kept at 30 C for 2 hr, but it was destroyed by temperatures above 55 C. At 58 and 60 C, the time required to inactivate 90% of the initial activity was 16 and 6.5 min, respectively. An activation energy of 9,500 cal/mole and a K(m) of 1.25 x 10(-4)m were obtained by using p-nitrophenyl beta-glucoside as a substrate. The K(i) value and hydrolysis of cellobiose by the enzyme indicated a high affinity of the enzyme for the cellobiose. The enzyme had its specificity on beta-glucosidic linkage and the rate of hydrolisis of glucosides depended upon the nature of the aglycon moiety. The inactivation studies showed the presence of sulfhydryl groups in the enzyme. The activity of the enzyme was easily destroyed by the Cu(++) and Hg(++) ions. The Michaelis-Menton relationship and the rate of heat inactivation indicated the presence of one type of noninteracting active site in the bacterial beta-glucosidase. Molecular weight of the enzyme was estimated by gel filtration (Sephadex G-200) and sucrose density gradient, and a value of 120,000 to 160,000 was obtained.

  4. Cloning and expression of plasmid genes encoding resistances to chromate and cobalt in Alcaligenes eutrophus.

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    Nies, A; Nies, D H; Silver, S

    1989-01-01

    Resistances to chromate and cobalt were cloned on a 30-kilobase-pair (kb) DNA region from the large Alcaligenes eutrophus plasmid pMOL28 into the broad-host-range mobilizable cosmid vector pVK102. A restriction nuclease map of the 30-kb region was generated. The resistances expressed from the hybrid plasmids after transfer back into A. eutrophus were inducible and conferred the same degree of resistance as the parent plasmid pMOL28. Resistances were expressed in metal-sensitive Alcaligenes st...

  5. Lipase expression in Pseudomonas alcaligenes is under the control of a two-component regulatory system

    NARCIS (Netherlands)

    Krzeslak, Joanna; Gerritse, Gijs; van Merkerk, Ronald; Cool, Robbert H.; Quax, Wim J.

    2008-01-01

    Preliminary observations in a large-scale fermentation process suggested that the lipase expression of Pseudomonas alcaligenes can be switched on by the addition of certain medium components, such as soybean oil. In an attempt to elucidate the mechanism of induction of lipase expression, we have set

  6. Extracellular polymerization of 3-hydroxyalkanoate monomers with the polymerase of Alcaligenes eutrophus

    NARCIS (Netherlands)

    Lenz, Robert W.; Farcet, Celine; Dijkstra, Pieter J.; Goodwin, Steve; Zhang, Shiming

    1999-01-01

    Previous investigations on the role of the polymerase in the synthesis of poly-3-hydroxybutyrate (PHB) are reviewed, and the results from earlier in vitro studies on the activity and selectivity of the polymerase of Alcaligenes eutrophus are discussed. In the present study the effect of glycerol on

  7. The secretion of lecithinase of Pseudomonas alcaligenes S2 was via type II secretion pathway

    Institute of Scientific and Technical Information of China (English)

    L(U) Jing; LI Fan; CHEN Sanfeng; LI Jilun

    2005-01-01

    Strain S2 is a lecithin (or phosphatidylcholine)- solubilizing bacterium, which was isolated from the rice rhizosphere in rural areas of Beijing, China. On the basis of a polyphasic study involving phenotypic tests, physiological and biochemical tests, 16S rDNA sequence analysis, G+C content determination and DNA-DNA hybridizations analysis, strain S2 was identified as Pseudomonas alcaligenes. P. alcaligenes S2 was mutagenized with Tn5 and four mutants showing decreased or increased solubilizing ability of lecithin were isolated based on the halo size around colonies on the solid plate supplemented with egg yolk. To characterize the genes of P. alcaligenes S2 involved in solubilization of lecithin, the EcoR I fragments of the chromosomes from the four mutant strains carrying a single transposon were cloned, and the DNA sequences flanking the Tn5 were determined. The Tn5 insertion sites in the mutants M808, M1329 and M1400, showing decreased solubilizing ability of lecithin, were found to be located in the xcpS, xcpX and xcpW , respectively, whose products XcpS, XcpX and XcpW were the components of type II secretion pathway. Complementation of xcpS, xcpX and xcpW could restore the corresponding mutants M808, M1329 and M1400 to solubilize lecithin. The data suggested that mutation in one of these xcp genes would lead to the absence of mature lecithinase secretion into the extracellular medium. The data also indicated that the secretion of lecithin-hydrolyzing enzyme of P. alcaligenes was via type II secretion pathway. In the mutant M20 showing increasing lecithin-hydrolyzing activity, the interrupted gene showed 86% identity with chpA of Pseudomonas aeruginosa PAO1, whose product plays an important role in controlling twitching motility of the bacterial cells.

  8. MICROBIAL LIPASES: PRODUCTION OF EXTRACELLULAR LIPASE ENZYME BY ALCALIGENES VISCOSUS (DOGE-1) STRAIN

    OpenAIRE

    P.Sekhar

    2012-01-01

    Industrially important extracellular lipase enzyme production was explored by utilizingmicrobial strain isolated from dairy effluents. Alcaligenes viscosus DOGE-1 strain isolated from dairywaste waters proved to produce extracellular lipase. Various growth factors were attempted to maximizethe lipase production by this strain. Growth factors like NH4PO4, Peptone, Urea coupled with peptone,KH2PO4, Olive oil and pH were found to be favored the maximum lipase production. This microbialstrain was...

  9. Influence of Ammonium Salts and Cane Molasses on Growth of Alcaligenes eutrophus and Production of Polyhydroxybutyrate

    OpenAIRE

    Beaulieu, M.; Beaulieu, Y.; Melinard, J.; Pandian, S.; GOULET, J.

    1995-01-01

    The production of polyhydroxybutyrate (PHB) by Alcaligenes eutrophus DSM 545 was studied in a synthetic medium with 3% glucose at pH 7.0 supplemented with several ammonium substrates and cane molasses. Growth was measured by dry cell weight, and the PHB content was measured by gas chromatography. The effects of ammonium sources such as sulfate, nitrate, phosphate, and chloride salts and those of different ammonium sulfate concentrations were evaluated. The best growth and PHB production were ...

  10. Sulphoacetaldehyde acetyltransferase yields acetyl phosphate : purification from Alcaligenes defragrans and gene clusters in taurine degradation

    OpenAIRE

    Ruff, Jürgen; Denger, Karin; Cook, Alasdair M.

    2003-01-01

    The facultatively anaerobic bacterium Alcaligenes defragrans NKNTAU was found to oxidize taurine (2-aminoethanesulphonate) with nitrate as the terminal electron acceptor. Taurine was transaminated to 2-sulphoacetaldehyde. This was not converted into sulphite and acetate by a "sulphoacetaldehyde sulpho-lyase" (EC 4.4.1.12), but into sulphite and acetyl phosphate, which was identified by three methods. The enzyme, which required the addition of phosphate, thiamin diphosphate and Mg(2+) ions for...

  11. Isolation of Indole Utilizing Bacteria Arthrobacter sp. and Alcaligenes sp. From Livestock Waste.

    Science.gov (United States)

    Kim, Minsu; Lee, Jin-Hyung; Kim, Eonmi; Choi, Hyukjae; Kim, Younghoon; Lee, Jintae

    2016-06-01

    Indole is an interspecies and interkingdom signaling molecule widespread in different environmental compartment. Although multifaceted roles of indole in different biological systems have been established, little information is available on the microbial utilization of indole in the context of combating odor emissions from different types of waste. The present study was aimed at identifying novel bacteria capable of utilizing indole as the sole carbon and energy source. From the selective enrichment of swine waste and cattle feces, we identified Gram-positive and Gram-negative bacteria belonging to the genera Arthrobacter and Alcaligenes. Bacteria belonging to the genus Alcaligenes showed higher rates of indole utilization than Arthrobacter. Indole at 1.0 mM for growth was completely utilized by Alcaligenes sp. in 16 h. Both strains produced two intermediates, anthranilic acid and isatin, during aerobic indole metabolism. These isolates were also able to grow on several indole derivatives. Interestingly, an adaptive response in terms of a decrease in cell size was observed in both strains in the presence of indole. The present study will help to explain the degradation of indole by different bacteria and also the pathways through which it is catabolized. Furthermore, these novel bacterial isolates could be potentially useful for the in situ attenuation of odorant indole and its derivatives emitted from different types of livestock waste. PMID:27570307

  12. Trichloroethylene degradation by two independent aromatic-degrading pathways in Alcaligenes eutrophus JMP134.

    OpenAIRE

    Harker, A R; Kim, Y.

    1990-01-01

    The bacterium Alcaligenes eutrophus JMP134(pJP4) degrades trichloroethylene (TCE) by a chromosomal phenol-dependent pathway and by the plasmid-encoded 2,4-dichlorophenoxyacetic acid pathway. The two pathways were independent and exhibited different rates of removal and capacities for quantity of TCE removed. The phenol-dependent pathway was more rapid (0.2 versus 0.06 nmol of TCE removed per min per mg of protein) and consumed all detectable TCE. The 2,4-dichlorophenoxyacetic acid-dependent p...

  13. Conversion of celluloses to proteins. [Use of Cellulomonas and Alcaligenes faecalis

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    De Leon, C.A.; Joson, L.M.

    1980-01-01

    Cellulosic wastes in the form of sugar cane bagasse was converted to single-cell protein by the action of Cellulomonas species subsequent to hydrolysis by NaOH and(or) autoclaving. As an aid to the process, in order to decompose the inhibitory cellobiose, Alcaligenes faecalis was introduced along with the Cellulomonas. Fungal enzyme production was greatest at the onset of fermentation, while the bacterial cellulases were produced over a more prolonged period, after an initial lag period. Biomass yield showed no correlation with enzyme production. The single-cell protein obtained comprised mainly lysine, methionine, cysteine, glycine, and valine.

  14. Alcaligenes eutrophus JMP134 "2,4-dichlorophenoxyacetate monooxygenase" is an alpha-ketoglutarate-dependent dioxygenase.

    OpenAIRE

    Fukumori, F; Hausinger, R P

    1993-01-01

    The Alcaligenes eutrophus JMP134 tfdA gene, encoding the enzyme responsible for the first step in 2,4-dichlorophenoxyacetic acid (2,4-D) biodegradation, was overexpressed in Escherichia coli, and several enzymatic properties of the partially purified gene product were examined. Although the tfdA-encoded enzyme is typically referred to as 2,4-D monooxygenase, we were unable to observe any reductant-dependent activity. Rather, we demonstrate that this enzyme is a ferrous ion-dependent dioxygena...

  15. Characterization of the Endogenous Plasmid from Pseudomonas alcaligenes NCIB 9867: DNA Sequence and Mechanism of Transfer

    OpenAIRE

    Kwong, Stephen M.; Yeo, Chew Chieng; Suwanto, Antonius; Poh, Chit Laa

    2000-01-01

    The endogenous plasmid pRA2 from Pseudomonas alcaligenes NCIB 9867 was determined to have 32,743 bp with a G+C content of 59.8%. Sequence analysis predicted a total of 29 open reading frames, with approximately half of them contributing towards the functions of plasmid replication, mobilization, and stability. The Pac25I restriction-modification system and two mobile elements, Tn5563 and IS1633, were physically localized. An additional eight open reading frames with unknown functions were als...

  16. MICROBIAL LIPASES: PRODUCTION OF EXTRACELLULAR LIPASE ENZYME BY ALCALIGENES VISCOSUS (DOGE-1 STRAIN

    Directory of Open Access Journals (Sweden)

    P.Sekhar

    2012-05-01

    Full Text Available Industrially important extracellular lipase enzyme production was explored by utilizingmicrobial strain isolated from dairy effluents. Alcaligenes viscosus DOGE-1 strain isolated from dairywaste waters proved to produce extracellular lipase. Various growth factors were attempted to maximizethe lipase production by this strain. Growth factors like NH4PO4, Peptone, Urea coupled with peptone,KH2PO4, Olive oil and pH were found to be favored the maximum lipase production. This microbialstrain was found to have a high lipolytic activity.

  17. Evidence for 4-chlorobenzoic acid dehalogenation mediated by plasmids related to pSS50. [Alcaligenes

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    Layton, A.C.; Sanseverino, J.; Wallace, W.; Corcoran, C.; Sayler, G.S. (Univ. of Tennessee, Knoxville (United States))

    1992-01-01

    The potential for polychlorinated biphenyl biodegradation is of environmental interest because of the toxicity and bioaccumulation of these compounds. Biodegradation studies on 4-chlorobiphenyl (4CB), a model for polychlorinated biphenyl degradation, have focused mainly on the genes and enzymes that permit the degradation of 4CB to 4-chlorobenzoate (4CBA). Most biphenyl- and polychlorinated biphenyl-degrading strains accumulate the corresponding chlorobenzoic acids without degrading the chlorobenzoate to CO{sub 2}. The study demonstrated that the 4-chlorobiphenyl-degrading Alcaligenes sp. strain ALP83 can degrade 4-chlorobenzoate to 4-hydroxybenzoate. The dehalogenase activity is correlated with a 10-kb fragment carried on plasmid pSS70.

  18. Cloning and expression of the transposable chlorobenzoate-3,4-dioxygenase genes of Alcaligenes sp. strain BR60.

    OpenAIRE

    Nakatsu, C. H.; Wyndham, R. C.

    1993-01-01

    Growth on 3-chlorobenzoate was found to induce the enzymes of the protocatechuate meta ring fission pathway in Alcaligenes sp. strain BR60. The chlorobenzoate catabolic genes, designated cba, were localized to a 3.7-kb NotI-EcoRI fragment within the nonrepeated region of the composite transposon Tn5271. The cba genes were cloned onto two broad-host-range vectors and expressed in Escherichia coli and Alcaligenes sp. strain BR6024. In E. coli, expression of the cba genes with the IPTG (isopropy...

  19. [Extraction, Purification and Identification of a Dexamethasone-degrading Enzymes Generated by Pseudomonas Alcaligenes].

    Science.gov (United States)

    Zhu, Lili; Yang, Zhibang; Yang, Qian; Shi, Zhongquan; Deng, Xichuan

    2015-10-01

    In this research a strain of isolated Pseudomonas alcaligenes which causes degradation of dexamethasone was acclimated further and its proteins of every position in the bacterium were separated by the osmotic shock method. The separated intracellular proteins which had the highest enzyme activity were extracted by the salting out with ammonium sulfate and were purified with the cation exchange chromatography and gel chromatography. The purified proteins which was active to cause degradation of dexamethasone had been detected were cut with enzyme and were analyzed with mass spectrometry. The results showed that the degradation rate to dexamethasone by acclimated Pseudomonas alcaligenes were increased from 23.63% to 52.84%. The degrading enzymes were located mainly in the intracellular of the bacteria and its molecular weight was about 41 kD. The specific activity of the purified degrading enzymes were achieved to 1.02 U x mg(-1). Its 5-peptide amino acid sequences were consistent with some sequences of the isovaleryl-CoA dehydrogenase. The protein enzyme may be a new kind degrading enzyme of steroidal compounds. Our experimental results provided new strategies for cleanup of dexamethasone in water environment with microbial bioremediation technique.

  20. Proton translocation during denitrification by a nitrifying--denitrifying Alcaligenes sp.

    Science.gov (United States)

    Castignetti, D; Hollocher, T C

    1983-04-01

    A heterotrophic nitrifying Alcaligenes sp. from soil was grown as a denitrifier on nitrate and subjected to oxidant pulse experiments to ascertain the apparent efficiencies of proton translocations during O2 and nitrogen-oxide respirations. With endogenous substrate as the reducing agent the leads to H+/2e- ratios, extrapolated to zero amount of oxidant per pulse, were 9.4, 3.7, 4.3 and 3.5 for O2, nitrate, nitrite and N2O, respectively. The value for O2 and those for the N-oxides are, respectively, somewhat larger and smaller than corresponding values for Paracoccus denitrificans. None of the three permeant ions employed with the Alcaligenes sp. (valinomycin-K+, thiocyanate and triphenylmethylphosphonium) was ideal for all purposes. Thiocyanate provided highest ratios for O2 but abolished the oxidant pulse response for nitrate and N2O. Valinomycin was slow to penetrate to the cytoplasmic membrane and relatively high concentrations were required for optimal performance. Triphenylmethylphosphonium enhanced passive proton permeability and diminished proton translocation at concentrations required to realize the maximal oxidant pulse response. PMID:6311094

  1. Character of ammonia removal by heterotrophic nitrifying bacteria Alcaligenes sp.S3 and its kinetics%异养硝化细菌Alcaligenes sp.S3除氮特性及动力学

    Institute of Scientific and Technical Information of China (English)

    余润兰; 苗雷

    2012-01-01

    从湘江生活污水排污口分离纯化的一株菌Alcaligenes sp.S3,在氨氮浓度为400 mg/L时,经过192 h的降解,氨氮的去除率达到88%,并且NH2OH和NO2--N并没出现积累。在对不同浓度的氨氮进行一级动力学拟合时发现,只有氨氮浓度较高时才很好地符合,浓度为500 mg/L时R2达到0.9923。酸性环境对Alcaligenes sp.S3生长有抑制作用,在pH7.5~10生长较好。摇床转速对Alcaligenes sp.S3除氮影响不大,C/N过低或过高对Alcaligenes sp.S3除氮都有影响。%A stain heterotropic nitrifier Alcaligenes sp.S3 was isolated from drain outlet of domestic sewage of Xiangjiang River.After 192 hours incubation,the removal rate of ammonia nitrogen by Alcaligenes sp.S3 was 88%,with the initial concentration of 400 mg/L,and the NH2OH and NO-2-N were not accumulated.When fitting with fist-order kinetics at diffrent concentrations of ammonia nitrogen,the removal rate of ammonia nitrogen was fitted better only at higer concentration,such as 500 mg/L,with the R2 of 0.9923.Alcaligenes sp.S3 grew badly in acidic environment,and grew well at pH of 7.5~10.The shaker speed had little effect on the removal efficiency of ammonia nitrogen,but the C/N ratio had great influence on the removal efficiency.

  2. The Genome Sequence of Alcaligenes faecalis NBIB-017 Contains Genes with Potentially High Activities against Erwinia carotovora

    Science.gov (United States)

    Liu, Xiaoyan; Huang, Daye; Wu, Jinping; Yu, Cui; Zhou, Ronghua; Liu, Cuijun; Zhang, Wei; Yao, Jingwu; Cheng, Meng

    2016-01-01

    Alcaligenes faecalis NBIB-017, a Gram-negative bacterium, was isolated from soil in China. Here, we provide the complete genome sequence of this bacterium, which possesses a high number of genes encoding antibacterial factors, including proteins and small molecular peptides. PMID:27056227

  3. Anaerobic taurine oxidation: a novel reaction by a nitrate-reducing Alcaligenes sp.

    Science.gov (United States)

    Denger, K; Laue, H; Cook, A M

    1997-06-01

    Enrichment cultures were prepared under strictly anoxic conditions in medium representing fresh water and containing an organosulfonate as electron donor and carbon source, and nitrate as electron acceptor. The inoculum was from the anaerobic digestor of two communal sewage works. The natural organosulfonates 2-aminoethanesulfonate (taurine), DL-2-amino-3-sulfopropionate (cysteate) and 2-hydroxyethanesulfonate (isethionate) all gave positive enrichments, whereas unsubstituted alkanesulfonates, such as methanesulfonate and arenesulfonates, gave no enrichment. Two representative enrichments were used to obtain pure cultures, and strains NKNTAU (utilizing taurine) and NKNIS (utilizing isethionate) were isolated. Strain NKNTAU was examined in detail. Out of 18 tested organosulfonates, it utilized only one, taurine, and was identified as a novel Alcaligenes sp., a facultatively anaerobic bacterium. Carbon from taurine was converted to cell material and carbon dioxide. The amino group was released as ammonium ion and the sulfonate moiety was recovered as sulfate. Nitrate was reduced to nitrogen gas.

  4. Potential application of Alcaligenes faecalis strain No. 4 in mitigating ammonia emissions from dairy wastewater.

    Science.gov (United States)

    Neerackal, George M; Ndegwa, Pius M; Joo, Hung-Soo; Wang, Xiang; Frear, Craig S; Harrison, Joseph H; Beutel, Marc W

    2016-04-01

    This research examined the potential mitigation of NH3 emissions from dairy manure via an enhanced aerobic bio-treatment with bacterium Alcaligenes faecalis strain No. 4. The studies were conducted in aerated batch reactors using air and pure oxygen. Aeration with air and oxygen removed approximately 40% and 100% total ammoniacal nitrogen (TAN), respectively. Intermittent oxygenation (every 2 or 4 h) reduced oxygen consumption by 95%, while attaining nearly identical TAN removal to continuous aeration. The results revealed that adequate oxygen supply and supplementing dairy wastewater with carbon are essential for this bioprocess. Based on the nitrogen mass balance, only 4% of TAN was released as NH3 gas, while the majority was retained in either the microbial biomass (58%) or converted to nitrogen gas (36%). The mass balance results reveal high potential for environmentally friendly bio-treatment of dairy wastewater using A. faecalis strain No. 4 with respect to NH3 emissions. PMID:26845217

  5. Structure of a new azurin from the denitrifying bacterium Alcaligenes xylosoxidans at high resolution.

    Science.gov (United States)

    Dodd, F E; Hasnain, S S; Abraham, Z H; Eady, R R; Smith, B E

    1995-11-01

    It has been reported previously that Alcaligenes xylosoxidans (NC1MB 11015) grown under denitrifying conditions produces two azurins instead of the single previously identified azurin [Dodd, Hasnain, Hunter, Abraham, Debenham, Kanzler, Eldridge, Eady, Ambler & Smith (1995). Biochemistry. In the press]. The new azurin, called azurin II, has been crystallized as blue elongated rectangular prisms with the tetragonal space group P4(1)22 and unit-cell parameters a = b = 52.65, c = 100.63 A. X-ray crystallographic data extending to 1.9 A resolution were collected by the Weissenberg method using 200 x 400 mm image plates and synchrotron X-rays of wavelength 0.97 A. The three-dimensional structure of azurin II has been solved by the molecular-replacement method using the structure of azurin from Alcaligenes denitrificans NCTC 8582 with which this new azurin shows a close homology. The quality of the initial map was sufficient to predict a number of sequence differences. The model is currently refined to an R-factor of 18.8% with X-ray data between 8.5 and 1.9 A. The final model of 961 protein atoms, one Cu atom and 50 water molecules has r.m.s. deviations from ideality of 0.009 A for bond lengths and 1.7 degrees for bond angles. The overall structure is similar to that of the azurin from A. denitrificans NCTC 8582. It has a beta-barrel structure with the Cu atom located near the top end of the molecule. The Cu atom is coordinated to Ndelta of His46 and His117 at 2.02 A and to Sgamma of Cys112 at 2.12 A, while the carbonyl O atom of Gly45 and Sdelta atom of Met121 provide the additional interactions at 2.75 and 3.26 A, respectively.

  6. Identification of a New Alcaligenes faecalis Strain MOR02 and Assessment of Its Toxicity and Pathogenicity to Insects

    OpenAIRE

    Rosa Estela Quiroz-Castañeda; Ared Mendoza-Mejía; Verónica Obregón-Barboza; Fernando Martínez-Ocampo; Armando Hernández-Mendoza; Felipe Martínez-Garduño; Gabriel Guillén-Solís; Federico Sánchez-Rodríguez; Guadalupe Peña-Chora; Laura Ortíz-Hernández; Paul Gaytán-Colín; Edgar Dantán-González

    2015-01-01

    We report the isolation of a bacterium from Galleria mellonella larva and its identification using genome sequencing and phylogenomic analysis. This bacterium was named Alcaligenes faecalis strain MOR02. Microscopic analyses revealed that the bacteria are located in the esophagus and intestine of the nematodes Steinernema feltiae, S. carpocapsae, and H. bacteriophora. Using G. mellonella larvae as a model, when the larvae were injected with 24,000 CFU in their hemocoel, more than 96% mortalit...

  7. Characterization of the novel dimethyl sulfide-degrading bacterium Alcaligenes sp. SY1 and its biochemical degradation pathway.

    Science.gov (United States)

    Sun, Yiming; Qiu, Jiguo; Chen, Dongzhi; Ye, Jiexu; Chen, Jianmeng

    2016-03-01

    Recently, the biodegradation of volatile organic sulfur compounds (VOSCs) has become a burgeoning field, with a growing focus on the reduction of VOSCs. The reduction of VOSCs encompasses both organic emission control and odor control. Herein, Alcaligenes sp. SY1 was isolated from active sludge and found to utilize dimethyl sulfide (DMS) as a growth substrate in a mineral salt medium. Response surface methodology (RSM) analysis was applied to optimize the incubation conditions. The following conditions for optimal degradation were identified: temperature 27.03°C; pH 7.80; inoculum salinity 0.84%; and initial DMS concentration 1585.39 μM. Under these conditions, approximately 99% of the DMS was degraded within 30 h of incubation. Two metabolic compounds were detected and identified by gas chromatography-mass spectrometry (GC-MS): dimethyl disulfide (DMDS) and dimethyl trisulfide (DMTS). The DMS degradation kinetics for different concentrations were evaluated using the Haldane-Andrews model and the pseudo first-order model. The maximum specific growth rate and degradation rate of Alcaligenes sp. SY1 were 0.17 h(-1) and 0.63 gs gx(-1)h(-1). A possible degradation pathway is proposed, and the results suggest that Alcaligenes sp. SY1 has the potential to control odor emissions under aerobic conditions. PMID:26623933

  8. Structure of the 2, 4′-dihydroxyacetophenone dioxygenase from Alcaligenes sp. 4HAP

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    Keegan, R.; Lebedev, A. [RAL, Harwell Oxford, Didcot OX11 0FA (United Kingdom); Erskine, P.; Guo, J.; Wood, S. P. [UCL Division of Medicine (Royal Free Campus), Rowland Hill Street, London NW3 2PF (United Kingdom); Hopper, D. J. [Aberystwyth University, Penglais, Aberystwyth SY23 3DA Wales (United Kingdom); Rigby, S. E. J. [University of Manchester, 131 Princess Street, Manchester M1 7DN (United Kingdom); Cooper, J. B., E-mail: jon.cooper@ucl.ac.uk [UCL Division of Medicine (Royal Free Campus), Rowland Hill Street, London NW3 2PF (United Kingdom); RAL, Harwell Oxford, Didcot OX11 0FA (United Kingdom)

    2014-09-01

    The first X-ray structure of a 2, 4′-dihydroxyacetophenone dioxygenase from Alcaligenes sp. 4HAP at a resolution of 2.2 Å is reported. This structure establishes that the enzyme adopts the cupin-fold, forming compact dimers with a pronounced hydrophobic interface between the monomers. Each monomer possesses a catalytic ferrous iron that is coordinated by three histidines (76, 78 and 114) and an additional ligand which has been putatively assigned as a carbonate, although formate and acetate are possibilities. The enzyme 2, 4′-dihydroxyacetophenone dioxygenase (DAD) catalyses the conversion of 2, 4′-dihydroxyacetophenone to 4-hydroxybenzoic acid and formic acid with the incorporation of molecular oxygen. Whilst the vast majority of dioxygenases cleave within the aromatic ring of the substrate, DAD is very unusual in that it is involved in C—C bond cleavage in a substituent of the aromatic ring. There is evidence that the enzyme is a homotetramer of 20.3 kDa subunits, each containing nonhaem iron, and its sequence suggests that it belongs to the cupin family of dioxygenases. In this paper, the first X-ray structure of a DAD enzyme from the Gram-negative bacterium Alcaligenes sp. 4HAP is reported, at a resolution of 2.2 Å. The structure establishes that the enzyme adopts a cupin fold, forming dimers with a pronounced hydrophobic interface between the monomers. The catalytic iron is coordinated by three histidine residues (76, 78 and 114) within a buried active-site cavity. The iron also appears to be tightly coordinated by an additional ligand which was putatively assigned as a carbonate dianion since this fits the electron density optimally, although it might also be the product formate. The modelled carbonate is located in a position which is highly likely to be occupied by the α-hydroxyketone group of the bound substrate during catalysis. Modelling of a substrate molecule in this position indicates that it will interact with many conserved amino acids in

  9. Nitrogen removal characteristics of heterotrophic nitrification-aerobic denitrification by Alcaligenes faecalis C16

    Institute of Scientific and Technical Information of China (English)

    Yuxiang Liu; Yao Wang; Yi Li; Hua An; Yongkang Lv

    2015-01-01

    Alcaligenes faecalis C16 was found to have the ability to heterotrophically nitrify and aerobical y denitrify. In order to further understand its nitrogen removal ability and mechanism, the growth and ammonium removal response were investigated at different C/N ratios and ammonium concentrations in the medium with citrate and acetate as carbon source separately. Furthermore, experiments of nitrogen sources, production of nitrogen gas and enzyme assay were conducted. Results show that the bacterium converts NH4+-N and produces NH2OH during the growing phase and nitrite accumulation is its distinct metabolic feature. A. faecalis C16 is able to tolerate not only high ammonium concentration but also high C/N ratio, and the ammonium tolerance is associated with carbon source and C/N ratio. The nitrogen balance under different conditions shows that approximately 28%–45%of the initial ammonium is assimilated into the cells, 44%–60%is denitrified and several percent is converted to nitrification products. A. faecalis C16 cannot utilize hydroxylamine, nitrite or nitrate as the sole nitrogen source for growth. However, nitrate can be used when ammonium is simultaneously present in the medium. A possible pathway for nitrogen removal by C16 is suggested. The preliminary enzyme assay provides more evidence for this nitrogen removal pathway.

  10. Thermodynamics of ligand binding to histone deacetylase like amidohydrolase from Bordetella/Alcaligenes.

    Science.gov (United States)

    Meyners, Christian; Baud, Matthias G J; Fuchter, Matthew J; Meyer-Almes, Franz-Josef

    2014-03-01

    Thermodynamic studies on ligand-protein binding have become increasingly important in the process of drug design. In combination with structural data and molecular dynamics simulations, thermodynamic studies provide relevant information about the mode of interaction between compounds and their target proteins and therefore build a sound basis for further drug optimization. Using the example of histone deacetylases (HDACs), particularly the histone deacetylase like amidohydrolase (HDAH) from Bordetella/Alcaligenes, a novel sensitive competitive fluorescence resonance energy transfer-based binding assay was developed and the thermodynamics of interaction of both fluorescent ligands and inhibitors to histone deacetylase like amidohydrolase were investigated. The assay consumes only small amounts of valuable target proteins and is suitable for fast kinetic and mechanistic studies as well as high throughput screening applications. Binding affinity increased with increasing length of aliphatic spacers (n = 4-7) between the hydroxamate moiety and the dansyl head group of ligand probes. Van't Hoff plots revealed an optimum in enthalpy contribution to the free energy of binding for the dansyl-ligand with hexyl spacer. The selectivity in the series of dansyl-ligands against human class I HDAC1 but not class II HDACs 4 and 6 increased with the ratio of ΔH(0)/ΔG(0). The data clearly emphasize the importance of thermodynamic signatures as useful general guidance for the optimization of ligands or rational drug design.

  11. The crystal structure of cobalt-substituted pseudoazurin from Alcaligenes faecalis.

    Science.gov (United States)

    Gessmann, Renate; Kyvelidou, Christiana; Papadovasilaki, Maria; Petratos, Kyriacos

    2011-03-01

    The Cu(II) center at the active site of the blue copper protein pseudoazurin from Alcaligenes faecalis has been substituted by Co(II) via denaturing of the protein, chelation and removal of copper by EDTA and refolding of the apo-protein, followed by addition of an aqueous solution of CoCl(2). Sitting drop vapour diffusion experiments produced green hexagonal crystals, which belong to space group P6(5), with unit cell dimensions a = b = 50.03, c = 98.80 Å. Diffraction data, collected at 291 K on a copper rotating anode X-ray source, were phased by the anomalous signal of the cobalt atom. The structure was built automatically, fitted manually and subsequently refined to 1.86 Å resolution. The Co-substituted protein exhibits similar overall geometry to the native structure with copper. Cobalt binds more strongly to the axial Met86-Sδ and retains the tetrahedral arrangement with the four ligand atoms, His40-Nδ(1), Cys78-Sγ, His81-Nδ(1), and 86Met-Sδ, although the structure is less distorted than the native copper protein. The structure reported herein, is the first crystallographic structure of a Co(II)-substituted pseudoazurin.

  12. Inhibition of Serratia marcescens Smj-11 biofilm formation by Alcaligenes faecalis STN17 crude extract

    Energy Technology Data Exchange (ETDEWEB)

    Lutfi, Zainal; Ahmad, Asmat [School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), 43600 Bangi, Selangor (Malaysia); Usup, Gires [School of Environmental and Natural Resources Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), 43600 Bangi, Selangor (Malaysia)

    2014-09-03

    Serratia marcescens biofilms are formed when they are bound to surfaces in aqueous environments. S. marcescens utilizes N-acylhomoserine lactone (AHL) as its quorum sensing signal molecule. The accumulation of AHL indicates the bacteria to produce matrices to form biofilms. Prodigiosin (2-methyl-3-pentyl-6-methoxyprodigiosin), which causes red pigmentation in the colonies, are also produced when the AHL reaches a certain threshold. The Alcaligenes faecalis STN17 crude extract is believed to inhibit quorum sensing in the S. marcescens Smj-11 and, thus, impedes its biofilm formation ability. A. faecalis STN17 was grown in marine broth, and ethyl acetate extraction was carried out. The crude compound of A. faecalis STN17 was diluted at high concentration (0.2-6.4 mg/mL) and was taken to confirm anti-biofilm activity through the crystal violet method in 96-wells plate. Then, the crude extract underwent purification using simple solvents partitioning test to discern the respective compounds that had the anti-biofilm activity under the crystal violet method. The crystal violet test showed that the crude did have anti-biofilm activity on S. marcescens Smj-11, but did not kill the cells. This finding signifies that the suppression of biofilm formation in S. marcescens by A. faecalis STN17 has a strong correlation. The partitioning test showed that A. faecalis STN17 crude extract has several compounds and only the compound(s) in chloroform showed activities. In conclusion, the crude extract of A. faecalis STN17 has the ability to inhibit S. marcescens Smj-11 biofilm formation.

  13. Sulphoacetaldehyde acetyltransferase yields acetyl phosphate: purification from Alcaligenes defragrans and gene clusters in taurine degradation.

    Science.gov (United States)

    Ruff, Jürgen; Denger, Karin; Cook, Alasdair M

    2003-01-15

    The facultatively anaerobic bacterium Alcaligenes defragrans NKNTAU was found to oxidize taurine (2-aminoethanesulphonate) with nitrate as the terminal electron acceptor. Taurine was transaminated to 2-sulphoacetaldehyde. This was not converted into sulphite and acetate by a "sulphoacetaldehyde sulpho-lyase" (EC 4.4.1.12), but into sulphite and acetyl phosphate, which was identified by three methods. The enzyme, which required the addition of phosphate, thiamin diphosphate and Mg(2+) ions for activity, was renamed sulphoacetaldehyde acetyltransferase (Xsc; EC 2.3.1.-). Inducible Xsc was expressed at high levels, and a three-step 11-fold purification yielded an essentially homogeneous soluble protein, which was a homotetramer in its native form; the molecular mass of the subunit was found to be between about 63 kDa (SDS/PAGE) and 65.3 kDa (matrix-assisted laser-desorption ionization-time-of-flight MS). The N-terminal and two internal amino acid sequences were determined, and PCR primers were generated. The xsc gene was amplified and sequenced; the derived molecular mass of the processed protein was 65.0 kDa. The downstream gene presumably encoded the inducible phosphate acetyltransferase (Pta) found in crude extracts. The desulphonative enzymes ("EC 4.4.1.12") from Achromobacter xylosoxidans NCIMB 10751 and Desulfonispora thiosulfatigenes GKNTAU were shown to be Xscs. We detected at least three subclasses of xsc in Proteobacteria and in Gram-positive bacteria, and they comprised a distinct group within the acetohydroxyacid synthase supergene family. Genome sequencing data revealed xsc genes in Burkholderia fungorum (80% sequence identity) and Sinorhizobium meliloti (61%) with closely linked pta genes. Different patterns of regulation for the transport and dissimilation of taurine were hypothesized for S. meliloti and B. fungorum. PMID:12358600

  14. Inhibition of Serratia marcescens Smj-11 biofilm formation by Alcaligenes faecalis STN17 crude extract

    Science.gov (United States)

    Lutfi, Zainal; Usup, Gires; Ahmad, Asmat

    2014-09-01

    Serratia marcescens biofilms are formed when they are bound to surfaces in aqueous environments. S. marcescens utilizes N-acylhomoserine lactone (AHL) as its quorum sensing signal molecule. The accumulation of AHL indicates the bacteria to produce matrices to form biofilms. Prodigiosin (2-methyl-3-pentyl-6-methoxyprodigiosin), which causes red pigmentation in the colonies, are also produced when the AHL reaches a certain threshold. The Alcaligenes faecalis STN17 crude extract is believed to inhibit quorum sensing in the S. marcescens Smj-11 and, thus, impedes its biofilm formation ability. A. faecalis STN17 was grown in marine broth, and ethyl acetate extraction was carried out. The crude compound of A. faecalis STN17 was diluted at high concentration (0.2-6.4 mg/mL) and was taken to confirm anti-biofilm activity through the crystal violet method in 96-wells plate. Then, the crude extract underwent purification using simple solvents partitioning test to discern the respective compounds that had the anti-biofilm activity under the crystal violet method. The crystal violet test showed that the crude did have anti-biofilm activity on S. marcescens Smj-11, but did not kill the cells. This finding signifies that the suppression of biofilm formation in S. marcescens by A. faecalis STN17 has a strong correlation. The partitioning test showed that A. faecalis STN17 crude extract has several compounds and only the compound(s) in chloroform showed activities. In conclusion, the crude extract of A. faecalis STN17 has the ability to inhibit S. marcescens Smj-11 biofilm formation.

  15. Enhanced Alcaligenes faecalis Denitrification Rate with Electrodes as the Electron Donor.

    Science.gov (United States)

    Wang, Xin; Yu, Ping; Zeng, Cuiping; Ding, Hongrui; Li, Yan; Wang, Changqiu; Lu, Anhuai

    2015-08-15

    The utilization by Alcaligenes faecalis of electrodes as the electron donor for denitrification was investigated in this study. The denitrification rate of A. faecalis with a poised potential was greatly enhanced compared with that of the controls without poised potentials. For nitrate reduction, although A. faecalis could not reduce nitrate, at three poised potentials of +0.06, -0.06, and -0.15 V (versus normal hydrogen electrode [NHE]), the nitrate was partially reduced with -0.15- and -0.06-V potentials at rates of 17.3 and 28.5 mg/liter/day, respectively. The percentages of reduction for -0.15 and -0.06 V were 52.4 and 30.4%, respectively. Meanwhile, for nitrite reduction, the poised potentials greatly enhanced the nitrite reduction. The nitrite reduction rates for three poised potentials (-0.06, -0.15, and -0.30 V) were 1.98, 4.37, and 3.91 mg/liter/h, respectively. When the potentials were cut off, the nitrite reduction rate was maintained for 1.5 h (from 2.3 to 2.25 mg/liter/h) and then greatly decreased, and the reduction rate (0.38 mg/liter/h) was about 1/6 compared with the rate (2.3 mg/liter/h) when potential was on. Then the potentials resumed, but the reduction rate did not resume and was only 2 times higher than the rate when the potential was off. PMID:26048940

  16. Degradation of Chlorophenols by Alcaligenes eutrophus JMP134(pJP4) in Bleached Kraft Mill Effluent

    OpenAIRE

    Valenzuela, J.; Bumann, U.; Cespedes, R.; Padilla, L.; Gonzalez, B

    1997-01-01

    The ability of Alcaligenes eutrophus JMP134(pJP4) to degrade 2,4-dichlorophenoxyacetic acid, 2,4,6-trichlorophenol, and other chlorophenols in a bleached kraft mill effluent was studied. The efficiency of degradation and the survival of strain JMP134 and indigenous microorganisms in short-term batch or long-term semicontinuous incubations performed in microcosms were assessed. After 6 days of incubation, 2,4-dichlorophenoxyacetate (400 ppm) or 2,4,6-trichlorophenol (40 to 100 ppm) were extens...

  17. Purification and characterization of chitinase from Alcaligenes faecalis AU02 by utilizing marine wastes and its antioxidant activity

    OpenAIRE

    Annamalai, Neelamegam; Veeramuthu Rajeswari, Mayavan; Vijayalakshmi, Shanmugam; Balasubramanian, Thangavel

    2011-01-01

    Marine waste is an abundant renewable source for the recovery of several value added metabolites with potential industrial applications. This study describes the production of chitinase on marine waste, with the subsequent use of the same marine waste for the extraction of antioxidants. A chitinase-producing bacterium isolated from seafood effluent was identified as Alcaligenes faecalis AU02. Optimal chitinase production was obtained in culture conditions of 37°C for 72 h in 100 ml medium con...

  18. Analysis of duplicated gene sequences associated with tfdR and tfdS in Alcaligenes eutrophus JMP134.

    OpenAIRE

    Matrubutham, U; Harker, A R

    1994-01-01

    Plasmid pJP4 of Alcaligenes eutrophus JMP134 encodes the degradation of 2,4-dichlorophenoxyacetic acid. A 1.2-kb BamHI-XhoI region of the restriction fragment BamHI-E has been proposed to contain the regulatory gene tfdR (A. R. Harker, R. H. Olsen, and R. J. Seidler, J. Bacteriol. 171:314-320, 1989; B. Kaphammer, J. J. Kukor, and R. H. Olsen, J. Bacteriol. 172:2280-2286, 1990). When sequenced and analyzed, the region is shown to contain two incomplete open reading frames (ORFs) positioned div...

  19. Duplication of a 2,4-dichlorophenoxyacetic acid monooxygenase gene in Alcaligenes eutrophus JMP134(pJP4).

    OpenAIRE

    Perkins, E J; Lurquin, P F

    1988-01-01

    The Alcaligenes eutrophus JMP134 plasmid pJP4 contains genes necessary for the complete degradation of 2,4-dichlorophenoxyacetic acid (2,4-D) and 3-chlorobenzoic acid. tfdA encodes 2,4-D monooxygenase, the initial enzyme in the 2,4-D catabolic pathway. The tfdA locus has recently been localized to a region on pJP4 13 kilobases away from a cluster of five genes, tfdB to tfdF, which encode the enzymes responsible for the further degradation of 2,4-D to chloromaleylacetic acid (W.R. Streber, K. ...

  20. Optimization of biodemulsifier production from Alcaligenes sp. S-XJ-1 and its application in breaking crude oil emulsion.

    Science.gov (United States)

    Liu, Jia; Huang, Xiang-Feng; Lu, Li-Jun; Xu, Jing-Cheng; Wen, Yue; Yang, Dian-Hai; Zhou, Qi

    2010-11-15

    A biodemulsifier-producing strain of Alcaligenes sp. S-XJ-1, isolated from petroleum-contaminated soil of the Karamay Oilfield, exhibited excellent demulsifying ability. The application of this biodemulsifier significantly improved the quality of separated water compared with the chemical demulsifier, polyether, which clearly indicates that it has potential applications in the crude oil extraction industry. To optimize its biosynthesis, the impacts of carbon sources, nitrogen sources and pH were studied in detail. Paraffin, a hydrophobic carbon source, favored the synthesis of this cell wall associated biodemulsifier. The nitrogen source ammonium citrate stimulated the production and demulsifying performance of the biodemulsifier. An alkaline environment (pH 9.5) of the initial culture medium favored the strain's growth and improved its demulsifying ability. The results showed paraffin, ammonium citrate and pH had significant effects on the production of the biodemulsifier. These three variables were further investigated using a response surface methodology based on a central composite design to optimize the biodemulsifier yield. The optimal yield conditions were found at a paraffin concentration of 4.01%, an ammonium citrate concentration of 8.08 g/L and a pH of 9.35. Under optimal conditions, the biodemulsifier yield from Alcaligenes sp. S-XJ-1 was increased to 3.42 g/L. PMID:20702035

  1. Structure of apo-azurin from Alcaligenes denitrificans at 1.8 A resolution.

    Science.gov (United States)

    Shepard, W E; Kingston, R L; Anderson, B F; Baker, E N

    1993-05-01

    The structure of apo-azurin from Alcaligenes denitrificans has been determined at high resolution by X-ray crystallography. Two separate structure analyses have been carried out, (i) on crystals obtained from solutions of apo-azurin and (ii) on crystals obtained by removal of copper from previously formed crystals of holo-azurin. Data to 1.8 A resolution were collected from the apo-azurin crystals, by Weissenberg photography (with image plates) using synchrotron radiation and by diffractometry, and the structure was refined by restrained least-squares methods to a final R value of 0.160 for all data in the range 10.0-1.8 A. The final model of 1954 protein atoms, 246 water molecules (66 half-weighted), four SO(4)(2-) ions, and two low-occupancy (0.13 and 0.15) Cu atoms has r.m.s. deviations of 0.012, 0.045 and 0.013 A from standard bond lengths, angle distances and planar groups. For copper-removed azurin, data to 2.2 A were collected by diffractometry and the structure refined by restrained least squares to a final R value of 0.158 for all data in the range 10.0-2.2 A. The final model of 1954 protein atoms, 264 water molecules, two SO(4)(2-) ions, two low occupancy (0.18 and 0.22) metal atoms and one unidentified atom (modelled as S) has r.m.s. deviations of 0.013, 0.047 and 0.012 A from standard bond lengths, angle distances and planar groups. The two structures are essentially identical to each other and show no significant differences from the oxidized and reduced holo-azurin structures. The ligand side chains move slightly closer together following the removal of copper, with the radius of the cavity between the three strongly binding ligands, His 46, His 117 and Cys 112, shrinking from 1.31 A in reduced azurin to 1.24 A in oxidized azurin and 1.16 A in apo-azurin. There is a suggestion of increased flexibility in one of the copper-binding loops but the structure supports the view that the copper site found in holo-azurin is a stable structure, defined by the

  2. Exogenous cofactors for the improvement of bioremoval and biotransformation of sulfamethoxazole by Alcaligenes faecalis.

    Science.gov (United States)

    Zhang, Yi-Bi; Zhou, Jiao; Xu, Qiu-Man; Cheng, Jing-Sheng; Luo, Yu-Lu; Yuan, Ying-Jin

    2016-09-15

    Sulfamethoxazole (SMX), an extensively prescribed or administered antibiotic pharmaceutical product, is usually detected in aquatic environments, because of its incomplete metabolism and elimination. This study investigated the effects of exogenous cofactors on the bioremoval and biotransformation of SMX by Alcaligenes faecalis. High concentration (100mg·L(-1)) of exogenous vitamin C (VC), vitamin B6 (VB6) and oxidized glutathione (GSSG) enhanced SMX bioremoval, while the additions of vitamin B2 (VB2) and vitamin B12 (VB12) did not significantly alter the SMX removal efficiency. Globally, cellular growth of A. faecalis and SMX removal both initially increased and then gradually decreased, indicating that SMX bioremoval is likely dependent on the primary biomass activity of A. faecalis. The decreases in the SMX removal efficiency indicated that some metabolites of SMX might be transformed into parent compound at the last stage of incubation. Two transformation products of SMX, N-hydroxy sulfamethoxazole (HO-SMX) and N4-acetyl sulfamethoxazole (Ac-SMX), were identified by a high-performance liquid chromatograph coupled with mass spectrometer. High concentrations of VC, nicotinamide adenine dinucleotide hydrogen (NADH, 7.1mg·L(-1)), and nicotinamide adenine dinucleotide (NAD(+), 6.6mg·L(-1)), and low concentrations of reduced glutathione (GSH, 0.1 and 10mg·L(-1)) and VB2 (1mg·L(-1)) remarkably increased the formation of HO-SMX, while VB12 showed opposite effects on HO-SMX formation. In addition, low concentrations of GSH and NADH enhanced Ac-SMX formation by the addition of A. faecalis, whereas cofactors (VC, VB2, VB12, NAD(+), and GSSG) had no obvious impact on the formation of Ac-SMX compared with the controls. The levels of Ac-SMX were stable when biomass of A. faecalis gradually decreased, indicating the direct effect of biomass on the formation of Ac-SMX by A. faecalis. In sum, these results help us understand the roles played by exogenous cofactors in

  3. Biocatalytic synthesis of (R)-(-)-mandelic acid from racemic mandelonitrile by a newly isolated nitrilase-producer Alcaligenes sp. ECU0401

    Institute of Scientific and Technical Information of China (English)

    Yu Cai He; Jian He Xu; Yi Xu; Li Ming Ouyang; Jiang Pan

    2007-01-01

    By using acetonitrile as the sole nitrogen source, a microbial strain with high nitrilase activity, named as Alcaligenes sp.ECU0401, was newly isolated from soil, which could enantioselectively transform racemic mandelonitrile into (R)-(-)-mandelic acid, with an enantiomeric excess of>99.9%.

  4. Production and characterization of poly(3-hydroxybutyrate) generated by Alcaligenes latus using lactose and whey after acid protein precipitation process.

    Science.gov (United States)

    Berwig, Karina Hammel; Baldasso, Camila; Dettmer, Aline

    2016-10-01

    Whey after acid protein precipitation was used as substrate for PHB production in orbital shaker using Alcaligenes latus. Statistical analysis determined the most appropriate hydroxide for pH neutralization of whey after protein precipitation among NH4OH, KOH and NaOH 10%w/v. The results were compared to those of commercial lactose. A scale-up test in a 4L bioreactor was done at 35°C, 750rpm, 7L/min air flow, and 6.5 pH. The PHB was characterized through Fourier Transform Infrared Spectroscopy, thermogravimetry and differential scanning calorimetry. NH4OH provided the best results for productivity (p), 0.11g/L.h, and for polymer yield, (YP/S), 1.08g/g. The bioreactor experiment resulted in lower p and YP/S. PHB showed maximum degradation temperature (291°C), melting temperature (169°C), and chemical properties similar to those of standard PHB. The use of whey as a substrate for PHB production did not affect significantly the final product quality. PMID:27347795

  5. Biodegradation and detoxification of melanoidin from distillery effluent using an aerobic bacterial strain SAG{sub 5} of Alcaligenes faecalis

    Energy Technology Data Exchange (ETDEWEB)

    Santal, Anita Rani, E-mail: anita.gangotra@gmail.com [Department of Microbiology, Maharshi Dayanand University, Rohtak-124001, Haryana (India); Singh, N.P. [Centre for Biotechnology, Maharshi Dayanand University, Rohtak-124001, Haryana (India); Saharan, Baljeet Singh [Department of Microbiology, Kurukshetra University, Kurukshetra-136119, Haryana (India)

    2011-10-15

    Highlights: {yields} The Alcaligenes faecalis strain SAG{sub 5} decolorizes 72.6 {+-} 0.56% of melanoidins. {yields} The decolorization was achieved at pH 7.5 and temperature 37 {sup o}C on 5th day. {yields} The distillery effluent after biological treatment is environmentally safe. - Abstract: Distillery effluent retains very dark brown color even after anaerobic treatment due to presence of various water soluble, recalcitrant and coloring compounds mainly melanoidins. In laboratory conditions, melanoidin decolorizing bacteria was isolated and optimized the cultural conditions at various incubation temperatures, pH, carbon sources, nitrogen sources and combined effect of both carbon and nitrogen sources. The optimum decolorization (72.6 {+-} 0.56%) of melanoidins was achieved at pH 7.5 and temperature 37 {sup o}C on 5th day of cultivation. The toxicity evaluation with mung bean (Vigna radiata) revealed that the raw distillery effluent was environmentally highly toxic as compared to biologically treated distillery effluent, which indicated that the effluent after bacterial treatment is environmentally safe. This proves to be novel biological treatment technique for biodegradation and detoxification of melanoidin from distillery effluent using the bacterial strain SAG{sub 5}.

  6. Evidence for isofunctional enzymes in the degradation of phenol, m- and p-toluate, and p-cresol via catechol meta-cleavage pathways in Alcaligenes eutrophus.

    OpenAIRE

    Hughes, E J; Bayly, R C; Skurray, R A

    1984-01-01

    A study of the degradation of phenol, p-cresol, and m- and p-toluate by Alcaligenes eutrophus 345 has provided evidence that these compounds are metabolized via separate catechol meta-cleavage pathways. Analysis of the enzymes synthesized by wild-type and mutant strains and by strains cured of the plasmid pRA1000, which encodes m- and p-toluate degradation, indicated that two or more isofunctional enzymes mediated several steps in the pathway. The formation of three catechol 2,3-oxygenases an...

  7. Inducible and constitutive expression of pMOL28-encoded nickel resistance in Alcaligenes eutrophus N9A

    International Nuclear Information System (INIS)

    The nickel and cobalt resistance plasmid pMOL28 was transferred by conjugation from its natural host Alcaligenes eutrophus CH34 to the susceptible A. eutrophus N9A. Strain N9A and its pMOL28-containing transconjugant M220 were studied in detail. At a concentration of 3.0 mM NiCl2, the wild-type N9A did not grow, while M220 started to grow at its maximum exponential growth rate a lag of 12 to 24 h. When grown in the presence of subinhibitory concentrations of nickel salt, M220 grew actively at 3 mM NiCl2 without a lag, indicating that nickel resistance is an inducible property. Expression of nickel resistance required active growth in the presence of nickel salts at a concentration higher than 0.05 mM. Two mutants of M220 were isolated which expressed nickel resistance constitutively. When the plasmids, pMOL28.1 and pMOL28.2, carried by the mutants were transferred to strains H16 and CH34, the transconjugants expressed constitutive nickel resistance. This indicates that the mutation is plasmid located. Both mutants expressed constitutive resistance to nickel and cobalt. Physiological studies revealed the following difference between strain N9A and its pMOL28.1-harboring mutant derivatives. (i) The uptake of 63NiCl2 occurred more rapidly in the susceptible strain and reached a 30- to 60-fold-higher amount than that in the pMOL28.1-harboring mutant; (ii) in intact cells of the susceptible strain N9A, the cytoplasmic hydrogenase was inhibited by 1 to 5 mM NiCl2, whereas 10 mM Ni2+ was needed to inhibit the hydrogenase of mutant cells; (iii) the minimal concentration of nickel chloride for the derepressed synthesis of cytoplasmic hydrogenase was lower in strain N9A than in the constitutive mutant

  8. Analysis, cloning, and high-level expression of 2,4-dichlorophenoxyacetate monooxygenase gene tfdA of Alcaligenes eutrophus JMP134.

    OpenAIRE

    Streber, W R; Timmis, K N; Zenk, M H

    1987-01-01

    Plasmid pJP4 of Alcaligenes eutrophus JMP134 contains all genes for the degradation of 2,4-dichlorophenoxyacetic acid (2,4-D). Five of these genes, tfdB, tfdC, tfdD, tfdE, and tfdF, have recently been localized and cloned (R. H. Don, A. J. Weightman, H.-J. Knackmuss, and K. N. Timmis, J. Bacteriol. 161:85-90, 1985). Gene tfdA, which codes for the 2,4-D monooxygenase, has now been found by mutagenesis with transposon Tn5. A 3-kilobase fragment of pJP4 cloned in a broad-host-range vector could ...

  9. Keratinase production and biodegradation of polluted secondary chicken feather wastes by a newly isolated multi heavy metal tolerant bacterium-Alcaligenes sp. AQ05-001.

    Science.gov (United States)

    Yusuf, Ibrahim; Ahmad, Siti Aqlima; Phang, Lai Yee; Syed, Mohd Arif; Shamaan, Nor Aripin; Abdul Khalil, Khalilah; Dahalan, Farrah Aini; Shukor, Mohd Yunus

    2016-12-01

    Biodegradation of agricultural wastes, generated annually from poultry farms and slaughterhouses, can solve the pollution problem and at the same time yield valuable degradation products. But these wastes also constitute environmental nuisance, especially in Malaysia where their illegal disposal on heavy metal contaminated soils poses a serious biodegradation issue as feather tends to accumulate heavy metals from the surrounding environment. Further, continuous use of feather wastes as cheap biosorbent material for the removal of heavy metals from effluents has contributed to the rising amount of polluted feathers, which has necessitated the search for heavy metal-tolerant feather degrading strains. Isolation, characterization and application of a novel heavy metal-tolerant feather-degrading bacterium, identified by 16S RNA sequencing as Alcaligenes sp. AQ05-001 in degradation of heavy metal polluted recalcitrant agricultural wastes, have been reported. Physico-cultural conditions influencing its activities were studied using one-factor-at-a-time and a statistical optimisation approach. Complete degradation of 5 g/L feather was achieved with pH 8, 2% inoculum at 27 °C and incubation period of 36 h. The medium optimisation after the response surface methodology (RSM) resulted in a 10-fold increase in keratinase production (88.4 U/mL) over the initial 8.85 U/mL when supplemented with 0.5% (w/v) sucrose, 0.15% (w/v) ammonium bicarbonate, 0.3% (w/v) skim milk, and 0.01% (w/v) urea. Under optimum conditions, the bacterium was able to degrade heavy metal polluted feathers completely and produced valuable keratinase and protein-rich hydrolysates. About 83% of the feathers polluted with a mixture of highly toxic metals were degraded with high keratinase activities. The heavy metal tolerance ability of this bacterium can be harnessed not only in keratinase production but also in the bioremediation of heavy metal-polluted feather wastes. PMID:27591845

  10. Keratinase production and biodegradation of polluted secondary chicken feather wastes by a newly isolated multi heavy metal tolerant bacterium-Alcaligenes sp. AQ05-001.

    Science.gov (United States)

    Yusuf, Ibrahim; Ahmad, Siti Aqlima; Phang, Lai Yee; Syed, Mohd Arif; Shamaan, Nor Aripin; Abdul Khalil, Khalilah; Dahalan, Farrah Aini; Shukor, Mohd Yunus

    2016-12-01

    Biodegradation of agricultural wastes, generated annually from poultry farms and slaughterhouses, can solve the pollution problem and at the same time yield valuable degradation products. But these wastes also constitute environmental nuisance, especially in Malaysia where their illegal disposal on heavy metal contaminated soils poses a serious biodegradation issue as feather tends to accumulate heavy metals from the surrounding environment. Further, continuous use of feather wastes as cheap biosorbent material for the removal of heavy metals from effluents has contributed to the rising amount of polluted feathers, which has necessitated the search for heavy metal-tolerant feather degrading strains. Isolation, characterization and application of a novel heavy metal-tolerant feather-degrading bacterium, identified by 16S RNA sequencing as Alcaligenes sp. AQ05-001 in degradation of heavy metal polluted recalcitrant agricultural wastes, have been reported. Physico-cultural conditions influencing its activities were studied using one-factor-at-a-time and a statistical optimisation approach. Complete degradation of 5 g/L feather was achieved with pH 8, 2% inoculum at 27 °C and incubation period of 36 h. The medium optimisation after the response surface methodology (RSM) resulted in a 10-fold increase in keratinase production (88.4 U/mL) over the initial 8.85 U/mL when supplemented with 0.5% (w/v) sucrose, 0.15% (w/v) ammonium bicarbonate, 0.3% (w/v) skim milk, and 0.01% (w/v) urea. Under optimum conditions, the bacterium was able to degrade heavy metal polluted feathers completely and produced valuable keratinase and protein-rich hydrolysates. About 83% of the feathers polluted with a mixture of highly toxic metals were degraded with high keratinase activities. The heavy metal tolerance ability of this bacterium can be harnessed not only in keratinase production but also in the bioremediation of heavy metal-polluted feather wastes.

  11. The crystal structure of D-threonine aldolase from Alcaligenes xylosoxidans provides insight into a metal ion assisted PLP-dependent mechanism.

    Directory of Open Access Journals (Sweden)

    Michael K Uhl

    Full Text Available Threonine aldolases catalyze the pyridoxal phosphate (PLP dependent cleavage of threonine into glycine and acetaldehyde and play a major role in the degradation of this amino acid. In nature, L- as well as D-specific enzymes have been identified, but the exact physiological function of D-threonine aldolases (DTAs is still largely unknown. Both types of enantio-complementary enzymes have a considerable potential in biocatalysis for the stereospecific synthesis of various β-hydroxy amino acids, which are valuable building blocks for the production of pharmaceuticals. While several structures of L-threonine aldolases (LTAs have already been determined, no structure of a DTA is available to date. Here, we report on the determination of the crystal structure of the DTA from Alcaligenes xylosoxidans (AxDTA at 1.5 Å resolution. Our results underline the close relationship of DTAs and alanine racemases and allow the identification of a metal binding site close to the PLP-cofactor in the active site of the enzyme which is consistent with the previous observation that divalent cations are essential for DTA activity. Modeling of AxDTA substrate complexes provides a rationale for this metal dependence and indicates that binding of the β-hydroxy group of the substrate to the metal ion very likely activates this group and facilitates its deprotonation by His193. An equivalent involvement of a metal ion has been implicated in the mechanism of a serine dehydratase, which harbors a metal ion binding site in the vicinity of the PLP cofactor at the same position as in DTA. The structure of AxDTA is completely different to available structures of LTAs. The enantio-complementarity of DTAs and LTAs can be explained by an approximate mirror symmetry of crucial active site residues relative to the PLP-cofactor.

  12. Antibacterial and toxicological evaluation of beta-lactams synthesized by immobilized beta-lactamase-free penicillin amidase produced by Alcaligenes sp.

    Science.gov (United States)

    Gayen, Jiaur R; Majee, Sutapa B; Das, Shuvendu; Samanta, Timir B

    2007-12-01

    Search for anti-beta-lactamase and synthesis of newer penicillin were suggested to overcome resistance to penicillin in chemotherapy. It was found that clavulanic acid, an ant-beta-lactamase was ineffective due to its structural modification by bacteria. Thus, there is a need for the synthesis of newer pencillins. Retro-synthesis was inspired by the success of forward reaction i.e.conversion of penicillin G to 6-aminopenicillanic acid (6-APA) by biological process. In the present study a better enzymatic method of synthesis of newer pencillin by a beta-lactamase-free penicillin amidase produced by Alcaligenes sp. is attempted. Antibacterial and toxicological evaluation of the enzymatically synthesized beta-lactams are reported. Condensation of 6-APA with acyl donor was found to be effective when the reaction is run in dimethyl formamide (DMF 50% v/v) in acetate buffer (25 mM pH 5.0) at 37 degrees C. Periplasm entrapped in calcium alginate exihibited the highest yield (approximately 34%) in synthesis. The minimum inhibitory concentration of the synthetic products against Staphylococcus aureus and Salmonella typhi varied between 20-80 microg/ml. Some of the products exhibited antibacterial activity against enteric pathogens. It was interesting to note that product A was potent like penicillin G. LD50 value of three products (product A, B and C) was more than 12 mg/kg. Furthermore, these synthetic beta-lactams did not exihibit any adverse effect on house keeping enzymes viz., serum glutamate oxalacetate-trans-aminase, serum glutamate pyruvate -trans-aminase, acid phosphatase, alkaline phosphatase of the test animals. The hematological profile (RBC and WBC) of the test animals also remained unaffected. PMID:18254214

  13. Influence of Yeast Extract on the Fermentation of Glucose by the Demulsifying Strain Alcaligenes sp.S-XJ-1%酵母提取物对葡萄糖发酵生产生物破乳菌Alcaligenes sp.S-XJ-1的影响

    Institute of Scientific and Technical Information of China (English)

    黄翔峰; 王凯; 黎明霞; 王彩林; 陆丽君; 刘佳

    2013-01-01

    以从石油污染的土壤中筛选出1株生物破乳菌Alcaligenes sp.S-XJ-1为对象,考察了以葡萄糖为碳源时添加酵母提取物对生物破乳菌菌体性质、破乳性能以及菌体元素组成的影响.结果表明,酵母提取物的投加能够有效提高生物破乳菌产量,在酵母提取物浓度为5g·L-1时,生物破乳菌产量达到3.0g·L-1,此时葡萄糖利用率亦达到最大的58%.随着酵母提取物的投加浓度的增大,培养得到的菌体破乳性能提高,在投加浓度为10 g·L-1时,破乳率达到76%;而培养得到的菌体C/N有所降低,对其菌体表面蛋白进行提取测定发现菌体总蛋白含量升高,这与FTIR分析破乳菌菌体表面蛋白质类物质提高的结论一致.推测该生物破乳菌菌体蛋白含量的提高增强了菌体的破乳性能,菌体蛋白类物质是影响其破乳性能的关键组分之一.%The demulsifying strain Alcaligenes sp. S-XJ-1, isolated from oil contaminated soil, was cultivated with glucose as the carbon source. The influences of yeast extract on the growth, demulsifying ability and the element composition of the strain were investigated. The results showed that the yeast extract could increase the biomass and enhance the glucose utilization of Alcaligenes sp. S-XJ-1. When the concentration of the yeast extract was 5 g·L-1 , the biomass was increased up to 3.0 g·L-1, and the glucose utilization achieved 58% . The demulsifying ability of the strain was improved with increasing yeast extract concentration. When the concentration of the yeast extract was 10 g·L-1 , the demulsification ratio of the obtained cell was 76% . While the C/N ratio of the cells decreased with the increasing concentration of yeast extract. The proteins of cells were extracted and measured. The results showed that the proteins of the obtained cell increased with the increasing concentration of yeast extract, in accordance with the increased concentrations of proteins on the

  14. Characterization of an Indole-3-Acetamide Hydrolase from Alcaligenes faecalis subsp. parafaecalis and Its Application in Efficient Preparation of Both Enantiomers of Chiral Building Block 2,3-Dihydro-1,4-Benzodioxin-2-Carboxylic Acid.

    Directory of Open Access Journals (Sweden)

    Pradeep Mishra

    Full Text Available Both the enantiomers of 2,3-dihydro-1,4-benzodioxin-2-carboxylic acid are valuable chiral synthons for enantiospecific synthesis of therapeutic agents such as (S-doxazosin mesylate, WB 4101, MKC 242, 2,3-dihydro-2-hydroxymethyl-1,4-benzodioxin, and N-[2,4-oxo-1,3-thiazolidin-3-yl]-2,3-dihydro-1,4-benzodioxin-2-carboxamide. Pharmaceutical applications require these enantiomers in optically pure form. However, currently available methods suffer from one drawback or other, such as low efficiency, uncommon and not so easily accessible chiral resolving agent and less than optimal enantiomeric purity. Our interest in finding a biocatalyst for efficient production of enantiomerically pure 2,3-dihydro-1,4-benzodioxin-2-carboxylic acid lead us to discover an amidase activity from Alcaligenes faecalis subsp. parafaecalis, which was able to kinetically resolve 2,3-dihydro-1,4-benzodioxin-2-carboxyamide with E value of >200. Thus, at about 50% conversion, (R-2,3-dihydro-1,4-benzodioxin-2-carboxylic acid was produced in >99% e.e. The remaining amide had (S-configuration and 99% e.e. The amide and acid were easily separated by aqueous (alkaline-organic two phase extraction method. The same amidase was able to catalyse, albeit at much lower rate the hydrolysis of (S-amide to (S-acid without loss of e.e. The amidase activity was identified as indole-3-acetamide hydrolase (IaaH. IaaH is known to catalyse conversion of indole-3-acetamide (IAM to indole-3-acetic acid (IAA, which is phytohormone of auxin class and is widespread among plants and bacteria that inhabit plant rhizosphere. IaaH exhibited high activity for 2,3-dihydro-1,4-benzodioxin-2-carboxamide, which was about 65% compared to its natural substrate, indole-3-acetamide. The natural substrate for IaaH indole-3-acetamide shared, at least in part a similar bicyclic structure with 2,3-dihydro-1,4-benzodioxin-2-carboxamide, which may account for high activity of enzyme towards this un-natural substrate. To

  15. Characterization of an Indole-3-Acetamide Hydrolase from Alcaligenes faecalis subsp. parafaecalis and Its Application in Efficient Preparation of Both Enantiomers of Chiral Building Block 2,3-Dihydro-1,4-Benzodioxin-2-Carboxylic Acid.

    Science.gov (United States)

    Mishra, Pradeep; Kaur, Suneet; Sharma, Amar Nath; Jolly, Ravinder S

    2016-01-01

    Both the enantiomers of 2,3-dihydro-1,4-benzodioxin-2-carboxylic acid are valuable chiral synthons for enantiospecific synthesis of therapeutic agents such as (S)-doxazosin mesylate, WB 4101, MKC 242, 2,3-dihydro-2-hydroxymethyl-1,4-benzodioxin, and N-[2,4-oxo-1,3-thiazolidin-3-yl]-2,3-dihydro-1,4-benzodioxin-2-carboxamide. Pharmaceutical applications require these enantiomers in optically pure form. However, currently available methods suffer from one drawback or other, such as low efficiency, uncommon and not so easily accessible chiral resolving agent and less than optimal enantiomeric purity. Our interest in finding a biocatalyst for efficient production of enantiomerically pure 2,3-dihydro-1,4-benzodioxin-2-carboxylic acid lead us to discover an amidase activity from Alcaligenes faecalis subsp. parafaecalis, which was able to kinetically resolve 2,3-dihydro-1,4-benzodioxin-2-carboxyamide with E value of >200. Thus, at about 50% conversion, (R)-2,3-dihydro-1,4-benzodioxin-2-carboxylic acid was produced in >99% e.e. The remaining amide had (S)-configuration and 99% e.e. The amide and acid were easily separated by aqueous (alkaline)-organic two phase extraction method. The same amidase was able to catalyse, albeit at much lower rate the hydrolysis of (S)-amide to (S)-acid without loss of e.e. The amidase activity was identified as indole-3-acetamide hydrolase (IaaH). IaaH is known to catalyse conversion of indole-3-acetamide (IAM) to indole-3-acetic acid (IAA), which is phytohormone of auxin class and is widespread among plants and bacteria that inhabit plant rhizosphere. IaaH exhibited high activity for 2,3-dihydro-1,4-benzodioxin-2-carboxamide, which was about 65% compared to its natural substrate, indole-3-acetamide. The natural substrate for IaaH indole-3-acetamide shared, at least in part a similar bicyclic structure with 2,3-dihydro-1,4-benzodioxin-2-carboxamide, which may account for high activity of enzyme towards this un-natural substrate. To the best of

  16. Purification and Biochemical Characteristics of Cyanide-degrading Enzyme from Alcaligenes sp.DN25%产碱杆菌DN25中降氰酶的分离纯化及生化特性

    Institute of Scientific and Technical Information of China (English)

    汪艳华; 刘幽燕; 唐爱星; 李青云; 王顺成

    2012-01-01

    The cyanide-degrading enzyme from Alcaligenes sp. DN25 was purified through ultrafiltration, precipitation with 30 mg/mL protamine sulfate, 30%~70% fractional ammonium sulphate precipitation and hydrophobic chromatography on Phenyl-Toyopearl 650M, and the pure enzyme with the specific activity of 44 U/mg was obtained. After the proper reaction conditions including enzyme concentration and reaction time were determined for the cyanide-degrading activity assay, the purified enzyme properties were then studied in order to provide a theoretical basis for the future researches on cyanide-degradation mechanism and genetic engineering of strain DN2S. The results showed that the optimal pH and temperature were 8.0 and 30℃, respectively. Good stability of the enzyme was observed at pH 7.6-8.0 and its activity decreased quickly when pH reached up to 9.0. The activity of the purified enzyme could keep stable when preserved at 30 t for 10 h while fast deactivation happened at 60 CC. However, with glycine added, the enzyme activity still remained 19.6% after incubated at 60 ℃ for 20 min. The degradation of cyanide by the purified enzyme followed a typical Michaelis-Menten kinetics, with Km of 3.11 mmol/L and Vmax of 0.23 mmol L-1 min-1. Fig 11, Tab 1, Ref 23%以一株可降氰的产碱杆菌DN25为酶来源,通过超滤、30 mg/mL硫酸鱼精蛋白沉淀、30%~70%硫酸铵盐析和Phenyl-Toyopearl 650M疏水层析等步骤,获得比活力为44 U/mg的纯化酶制剂.在确定酶浓度、反应时间等氰降解活力测定条件后开展酶学性质研究,试图为将来氰降解代谢机理的深入研究和菌株的基因工程改造提供理论基础.研究结果表明,此纯化酶催化氰化物水解的最适pH值为8.0,最适温度为30℃.该酶在pH 7.0~8.0区域稳定,而在pH>9时会很快失活;在30℃保存10 h,酶活力保持稳定,高于60℃,酶快速失活.加入甘氨酸稳定剂,在60℃下保存20 min酶活仍可保留19.6%.酶促反应动

  17. Biodegradation of organochlorine pesticide endosulfan by bacterial strain Alcaligenes faecalis JBW4.

    Science.gov (United States)

    Kong, Lingfen; Zhu, Shaoyuan; Zhu, Lusheng; Xie, Hui; Su, Kunchang; Yan, Tongxiang; Wang, Jun; Wang, Jinhua; Wang, Fenghua; Sun, Fengxia

    2013-11-01

    The recently discovered endosulfan-degrading bacterial strain Alcaligenesfaecalis JBW4 was isolated from activated sludge. This strain is able to use endosulfan as a carbon and energy source. The optimal conditions for the growth of strain JBW4 and for biodegradation by this strain were identified, and the metabolic products of endosulfan degradation were studied in detail. The maximum level of endosulfan biodegradation by strain JBW4 was obtained using broth at an initial pH of 7.0, an incubation temperature of 40 degreeC and an endosulfan concentration of 100 mg/L. The concentration of endosulfan was determined by gas chromatography. Strain JBW4 was able to degrade 87.5% of alpha-endosulfan and 83.9% of beta-endosulfan within 5 days. These degradation rates are much higher than the previously reported bacterial strains. Endosulfan diol and endosulfan lactone were the major metabolites detected by gas chromatography-mass spectrometry; endosulfan sulfate, which is a persistent and toxic metabolite, was not detected. These results suggested that A. faecalis JBW4 degrades endosulfan via a non-oxidative pathway. The biodegradation of endosulfan by A. faecalis is reported for the first time. Additionally, the present study indicates that strain JBW4 may have potential for the biodegradation of endosulfan residues.

  18. Class 1 integrons and tetracycline resistance genes in Alcaligenes, Arthrobacter, and Pseudomonas spp. isolated from pigsties and manured soil

    DEFF Research Database (Denmark)

    Agersø, Yvonne; Sandvang, Dorthe

    2005-01-01

    The presence of tetracycline resistance (Tc-r) genes and class I integrons (in-1), and their ability to cotransfer were investigated in Tc-r gram-negative (185 strains) and gram-positive (72 strains) bacteria from Danish farmland and pigsties. The isolates belonged to the groups or species...... tet(33). No isolates contained more than one tet gene. The in-l-positive isolates were tested for resistance to selected antimicrobial agents and showed resistance to three to nine drugs. Filter-mating experiments showed cotransfer of Tc-r and class I integrons from soil isolates to Escherichia coli...... and/or Pseudomonas putida. We conclude that soil bacteria in close contact to manure or pigsty environment may thus have an important role in horizontal spread of resistance. Use of tetracyclines in food animal production may increase not only Tc-r but also multidrug resistance (caused by the presence...

  19. Biodegradation and detoxification of melanoidin from distillery effluent using an aerobic bacterial strain SAG5 of Alcaligenes faecalis.

    Science.gov (United States)

    Santal, Anita Rani; Singh, N P; Saharan, Baljeet Singh

    2011-10-15

    Distillery effluent retains very dark brown color even after anaerobic treatment due to presence of various water soluble, recalcitrant and coloring compounds mainly melanoidins. In laboratory conditions, melanoidin decolorizing bacteria was isolated and optimized the cultural conditions at various incubation temperatures, pH, carbon sources, nitrogen sources and combined effect of both carbon and nitrogen sources. The optimum decolorization (72.6 ± 0.56%) of melanoidins was achieved at pH 7.5 and temperature 37 °C on 5th day of cultivation. The toxicity evaluation with mung bean (Vigna radiata) revealed that the raw distillery effluent was environmentally highly toxic as compared to biologically treated distillery effluent, which indicated that the effluent after bacterial treatment is environmentally safe. This proves to be novel biological treatment technique for biodegradation and detoxification of melanoidin from distillery effluent using the bacterial strain SAG(5). PMID:21880418

  20. Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134(pJP4).

    OpenAIRE

    Don, R H; Weightman, A J; Knackmuss, H J; Timmis, K N

    1985-01-01

    Plasmid pJP4 permits its host bacterium, strain JMP134, to degrade and utilize as sole sources of carbon and energy 3-chlorobenzoate and 2,4-dichlorophenoxyacetic acid (R. H. Don and J. M. Pemberton, J. Bacteriol. 145:681-686, 1981). Mutagenesis of pJP4 by transposons Tn5 and Tn1771 enabled localization of five genes for enzymes involved in these catabolic pathways. Four of the genes, tfdB, tfdC, tfdD, and tfdE, encoded 2,4-dichlorophenol hydroxylase, dichlorocatechol 1,2-dioxygenase, chlorom...

  1. Isolation of Alcaligenes sp strain L6 at low oxygen concentrations and degradation of 3-chlorobenzoate via a pathway not involving (chloro)catechols

    NARCIS (Netherlands)

    Krooneman, J; Wieringa, EBA; Moore, ERB; Gerritse, J; Prins, RA; Gottschal, JC

    1996-01-01

    Isolations of 3-chlorobenzoate (3CBA)-degrading aerobic bacteria under reduced O-2, partial pressures yielded organisms which metabolized 3CBA via the gentisate or the protocatechuate pathway rather than via the catechol route. The 3CBA metabolism of one of these isolates, L6, which,vas identified a

  2. Remediation of Degrading Bacterium Alcaligenes sp. J3 on Phytotoxicity Caused by Quinclorac%降解菌J3对茄科作物二氯喹啉酸药害的修复作用

    Institute of Scientific and Technical Information of China (English)

    黄翅; 罗坤

    2015-01-01

    为了明确二氯喹啉酸降解菌J3对茄科作物二氯喹啉酸药害的修复作用,在湖南农业大学教学实习基地进行了田间试验。结果表明:经降解菌J3处理后,茄子的叶长、叶宽、株高分别恢复到了空白对照的93.98%、91.88%、95.55%,而药害对照组茄子的叶长、叶宽、株高仅为空白对照的55.23%、49.71%、75.76%;降解菌处理后,烟草的叶长、叶宽及株高分别恢复到了空白对照组的90.95%、92.37%、91.91%,而药害对照组烟草的叶长、叶宽及株高仅为空白对照组72.81%、37.55%、68.45%。由此表明,二氯喹啉酸降解菌J3对茄科作物茄子、烟草的药害可以起到良好的修复效果,可以广泛用于田间作物二氯喹啉酸药害的生物修复。%Field experiment was conducted in order to test remediation effect of quinclorac degrading bacteria J3 on quinclorac phytotoxicity to Solanaceae crops.The results showed that with application of strain J3,leaf length,leaf width and plant height of eggplant were recovered to 93.98%,91.88%,95.55%of CK,while that of control were only 55.23%,49.71%,75.76%of CK;with application of strain J3,leaf length,leaf width and plant height of tobacco were recovered to 90.95%,92.37% and 91.91% of healthy tobacco,while that of control were only 72.81%,37.55%,68.45% of healthy tobacco.It’s indicated that J3 could effectively alleviate quinclorac phytotoxicity of Solanaceae crops,and it could be widely used for bioremediation of quinclorac phytotoxicity.

  3. 海洋低温蛋白酶菌株发酵条件的研究(Ⅱ)%Study on Fermentation conditions of a Marine Low Temperature Acid Protease High-production Strain from Pseudomonas alcaligenes

    Institute of Scientific and Technical Information of China (English)

    迟乃玉; 张庆芳; 王晓辉; 窦少华; 郑学仿

    2006-01-01

    建立了海洋低温蛋白酶菌株(Pseudomonas alcdigenes简写为Pa040523)发酵最适pH值、温度、时间、接种量、通气量分别为5.5、12℃、72 h、7%、170 mL;在最适发酵条件下,Pa040523菌株50L发酵罐中低温蛋白酶活性为1,976.2 U/mg.

  4. Transformation of the insecticide teflubenzuron by microorganisms

    NARCIS (Netherlands)

    Finkelstein, Z.I.; Baskunov, B.P.; Rietjens, I.M.C.M.; Boersma, M.G.; Vervoort, J.; Golovleva, L.A.

    2001-01-01

    Transformation of teflubenzuron, the active component in the insecticide commercialized as Nomolt, by soil microorganisms was studied. It was shown that microorganisms, belonging to Bacillus, Alcaligenes, Pseudomonas and Acinetobacter genera are capable to perform the hydrolytic cleavage of the phen

  5. Uniform designation for genes of the Calvin-Benson-Bassham reductive pentose phosphate pathway of bacteria

    NARCIS (Netherlands)

    Tabita, F. Robert; Gibson, Janet L.; Bowien, Botho; Dijkhuizen, Lubbert; Meijer, Wilhelmus

    1992-01-01

    Structural and regulatory genes encoding enzymes and proteins of the reductive pentose phosphate pathway have been isolated from a number of bacteria recently. In the phototroph Rhodobacter sphaeroides, and in two chemoautotrophic bacteria, Alcaligenes eutrophus and Xanthobacter flavus, these genes

  6. Improved Degradation of Monochlorophenols by a Constructed Strain

    OpenAIRE

    Schwien, Uwe; Schmidt, Eberhard

    1982-01-01

    Pseudomonas sp. strain B13, a strain able to degrade 3-chlorobenzoate and, after prolonged adaptation (40 days), 4-chlorophenol, could transfer the ability to degrade chlorocatechols to a recipient, Alcaligenes sp. strain A7, which is able to grow with benzoate and phenol. Representative transconjugants, such as Alcaligenes sp. strain A7-2, were able to utilize all three isomeric chlorophenols; this property was not possessed by the donor or the recipient. The ability to grow readily with 4-c...

  7. Kinetic Resolution of 2-Chloro-1-(3,4-dichlorophenyl)ethanol by Lipase-Catalyzed Transesterification

    Institute of Scientific and Technical Information of China (English)

    WANG Ming-Hui; LI Ya-Feng; LIU Yong-Jun; ZHANG Shu-Sheng

    2007-01-01

    Kinetic resolution of racemic 2-chloro-l-(3,4-dichlorophenyl)ethanol was performed by free Alcaligene sp. lipase-catalyzed irreversible transesterification affording the (R)-isomer with≥95% ee and the (S)-isomer with ≥90% ee. The activity of lipase Alcaligene sp. strongly depends on the basicity of the reaction system, and an organic base such as triethylamine can enhance the activity of the lipase and enantioselectivity markedly.

  8. Results of the Study of Mutagenic Effects of Microbial Polysaccharides

    Directory of Open Access Journals (Sweden)

    Natalya A. Sidorova

    2016-06-01

    Full Text Available The article presents the results of a study of mutagenic effects of Pseudomonas alcaligenеs polysaccharides. Pseudomonas genus – non-fermentative ubiquitous bacteria, having specific metabolic cycles and unique physical, chemical and biological properties was used as a producer of natural exopolysaccharides. In an experiment using the Ames test, three variants of test compounds were studied: 1. a compound of the Pseudomonas alcaligenes biofilm, 2. exopolysaccharide matrix and the microorganism cell wall compound, and 3. actually the microbial exopolysaccharide. In all cases the lack of mutagen action of polysaccharides of Pseudomonas alcaligenes is proved that make them perspective for use as nanomaterials of new generation – alternative wound coverings.

  9. Antibacterial activity of Pterocarpus santalinus

    Directory of Open Access Journals (Sweden)

    Manjunatha B

    2006-01-01

    Full Text Available Antibacterial activity of leaf and stem bark of Pterocarpus santalinus (Fabaceae was investigated. The antibacterial activity was tested against both Gram-positive and Gram-negative organisms. Among the two extracts tested, stem bark extract exhibited broad-spectrum antibacterial activity against the tested organisms. The stem bark extract showed maximum activity against Enterobacter aerogenes, Alcaligenes faecalis, Escherichia coli, Pseudomonas aeruginosa, Proteus vulgaris, Bacillus cereus, Bacillus subtilis, Staphylococcus aureus . The leaf extract showed maximum activity against Escherichia coli, Alcaligenes faecalis, Enterobacter aerogenes and Pseudomonas aeruginosa . Both extracts exhibited concentration dependent activity.

  10. Reconstitution of the type-1 active site of the H145G/A variants of nitrite reductase by ligand insertion

    NARCIS (Netherlands)

    Wijma, HJ; Boulanger, MJ; Molon, A; Fittipaldi, M; Huber, M; Murphy, MEP; Verbeet, MP; Canters, GW

    2003-01-01

    Variants of the copper-containing nitrite reductase (NiR) of Alcaligenes faecalis S6 were constructed by site-directed mutagenesis, by which the C-terminal histidine ligand (His145) of the Cu in the type-1 site was replaced by an alanine or a glycine. The type-1 sites in the NiR variants as isolated

  11. Chemical resistance of the gram-negative bacteria to different sanitizers in a water purification system

    OpenAIRE

    Penna Thereza CV; Martins Alzira MS; Mazzola Priscila G

    2006-01-01

    Abstract Background Purified water for pharmaceutical purposes must be free of microbial contamination and pyrogens. Even with the additional sanitary and disinfecting treatments applied to the system (sequential operational stages), Pseudomonas aeruginosa, Pseudomonas fluorescens, Pseudomonas alcaligenes, Pseudomonas picketti, Flavobacterium aureum, Acinetobacter lowffi and Pseudomonas diminuta were isolated and identified from a thirteen-stage purification system. To evaluate the efficacy o...

  12. Bidirectional catalysis by copper-containing nitrite reductase

    NARCIS (Netherlands)

    Wijma, HJ; Canters, GW; de Vries, S; Verbeet, MP

    2004-01-01

    The copper-containing nitrite reductase from Alcaligenes faecalis S-6 was found to catalyze the oxidation of nitric oxide to nitrite, the reverse of its physiological reaction. Thermodynamic and kinetic constants with the physiological electron donor pseudoazurin were determined for both directions

  13. Sensing nitrite through a pseudoazurin-nitrite reductase electron transfer relay

    NARCIS (Netherlands)

    Astier, Y; Canters, GW; Davis, JJ; Hill, HAO; Verbeet, MP; Wijma, HJ

    2005-01-01

    Nitrite is converted to nitric oxide by haem or copper-containing enzymes in denitrifying bacteria during the process of denitrification. In designing an efficient biosensor, this enzymic turnover must be quantitatively assessed. The enzyme nitrite reductase from Alcaligenes faecalis contains a redo

  14. Enzymatic process for acylation of resveratrol at position 3

    OpenAIRE

    Torres, Pamela; Plou Gasca, Francisco José; Ballesteros Olmo, Antonio

    2008-01-01

    [EN] Enzymatic procedure for the regioselective acylation at position 3 of resveratrol utilising a vinyl ester and specific fungal and bacterial lipases, immobilised, as biocatalyst. The lipases utilised in said procedure come from bacteria or fungi selected from among Alcaligenes, Pseudomonas or Thermomyces.

  15. Method for preventing and/or treating insulin resistance

    NARCIS (Netherlands)

    Nieuwdorp, M.; Vos, de W.M.

    2013-01-01

    The present invention describes use of Eubacterium hallii et rel. and/or Alcaligenes faecalis et rel., as well as pharmaceutical, food, or feed compositions comprising these bacteria, as a medicament, in particular for preventing and/or treating insulin resistance and/or insulin resistance-related c

  16. In Vitro Pharmacodynamics of Levofloxacin and Other Aerosolized Antibiotics under Multiple Conditions Relevant to Chronic Pulmonary Infection in Cystic Fibrosis ▿

    OpenAIRE

    King, Paula; Lomovskaya, Olga; Griffith, David C.; Burns, Jane L.; Dudley, Michael N.

    2009-01-01

    The inhalational administration of antibiotics can provide high concentrations locally in the lungs of cystic fibrosis patients and, thus, can be useful for the treatment of chronic bacterial infections. The present study evaluated the in vitro activities of levofloxacin, ciprofloxacin, tobramycin, amikacin, and aztreonam against clinical isolates of Pseudomonas aeruginosa, Burkholderia cepacia complex, Stenotrophomonas maltophilia, Alcaligenes xylosoxidans, and Staphylococcus aureus from cys...

  17. Isolation and characterization of bacteria from Waste Sugar Mill Arasoe-Kab.Bone As Raw Material Producing Bioplastics Degraded (Poly-??-hydroxybutyrate)

    OpenAIRE

    Haedar, Nur; Gobel, Risco B.; Umar, Muhammad Ruslan; Ambeng, Ambeng

    2014-01-01

    Beberapa genera bakteri seperti Alcaligenes, Pseudomonas, Azotobacter, Rhizobium, Azospirilum, dan Micrococcus dari beberapa spesies algae mampu mengakumulasi granula PHB yang diakumulasi oleh sel bakteri yang ditumbuhkan dalam medium yang mengandung konsentrasi karbon tinggi tetapi nitrogen dan fosfatnya terbatas, Salah satu upaya untuk menekan biaya produksi perlu dilakukan penelitian dari sudut pandang mikrobiologi, diantaranya ialah menemukan mikroba unggul baru penghasil PHB atau menemuk...

  18. GenBank blastx search result: AK060606 [KOME

    Lifescience Database Archive (English)

    Full Text Available AK060606 001-025-B10 U09865.1 Alcaligenes eutrophus pyruvate dehydrogenase (pdhA), ...dihydrolipoamide acetyltransferase (pdhB), dihydrolipoamide dehydrogenase (pdhL), and ORF3 genes, complete cds.|BCT BCT 6e-14 +2 ...

  19. GenBank blastx search result: AK104832 [KOME

    Lifescience Database Archive (English)

    Full Text Available AK104832 001-042-A09 U09865.1 Alcaligenes eutrophus pyruvate dehydrogenase (pdhA), ...dihydrolipoamide acetyltransferase (pdhB), dihydrolipoamide dehydrogenase (pdhL), and ORF3 genes, complete cds.|BCT BCT 2e-31 +1 ...

  20. GenBank blastx search result: AK242902 [KOME

    Lifescience Database Archive (English)

    Full Text Available AK242902 J090081N15 U09865.1 AEU09865 Alcaligenes eutrophus pyruvate dehydrogenase (pdh...A), dihydrolipoamide acetyltransferase (pdhB), dihydrolipoamide dehydrogenase (pdhL), and ORF3 genes, complete cds. BCT 4e-26 1 ...

  1. Calorimetric and spectroscopic investigations of the thermal denaturation of wild type nitrite reductase

    NARCIS (Netherlands)

    Stirpe, A; Guzzi, R; Wijma, H; Verbeet, MP; Canters, GW; Sportelli, L

    2005-01-01

    Nitrite reductase (NiR) is a multicopper protein, with a trimeric structure containing two types of copper site: type I is present in each subunit whereas type 2 is localized at the subunits interface. The paper reports on the thermal behaviour of wild type NiR from Alcaligenes faecalis S-6. The tem

  2. HYDROCARBON-DEGRADING BACTERIA AND SURFACTANT ACTIVITY

    Energy Technology Data Exchange (ETDEWEB)

    Brigmon, R; Topher Berry, T; Grazyna A. Plaza, G; jacek Wypych, j

    2006-08-15

    Fate of benzene ethylbenzene toluene xylenes (BTEX) compounds through biodegradation was investigated using two different bacteria, Ralstonia picketti (BP-20) and Alcaligenes piechaudii (CZOR L-1B). These bacteria were isolated from extremely polluted petroleum hydrocarbon contaminated soils. PCR and Fatty Acid Methyl Ester (FAME) were used to identify the isolates. Biodegradation was measured using each organism individually and in combination. Both bacteria were shown to degrade each of the BTEX compounds. Alcaligenes piechaudii biodegraded BTEXs more efficiently while mixed with BP-20 and individually. Biosurfactant production was observed by culture techniques. In addition 3-hydroxy fatty acids, important in biosurfactant production, was observed by FAME analysis. In the all experiments toluene and m+p- xylenes were better growth substrates for both bacteria than the other BTEX compounds. In addition, the test results indicate that the bacteria could contribute to bioremediation of aromatic hydrocarbons (BTEX) pollution increase biodegradation through the action by biosurfactants.

  3. Effect of saturated and unsaturated fatty acid supplementation on bio-plastic production under submerged fermentation

    OpenAIRE

    Srivastava, S. K.; Tripathi, Abhishek Dutt

    2013-01-01

    Polyhydroxyalkanoates (PHAs) are intracellular reserve material stored by gram-negative bacteria under nutrient-limited condition. PHAs are utilized in biodegradable plastics (bio-plastics) synthesis due to their similarity with conventional synthetic plastic. In the present study, the effect of addition of saturated and unsaturated fatty acids (palmitic acid, stearic acid, oleic acid and linoleic acid) on the production of PHAs by the soil bacterium Alcaligenes sp. NCIM 5085 was studied. Fat...

  4. Disease: H01081 [KEGG MEDICUS

    Lifescience Database Archive (English)

    Full Text Available gative bacteria that belongs to the genus Alicaligenes. It can rarely cause keratitis in patients who had worn contact...Keratitis after Contact Lens Usage. Korean J Ophthalmol 26:49-53 (2012) PMID:21993586 Ahmed AA, Pineda R Alcaligenes xylosoxidans con...tact lens-related keratitis--a case report and literature review. Eye Contact Lens 37:386-9 (2011) ...

  5. Determinants Encoding Resistance to Several Heavy Metals in Newly Isolated Copper-Resistant Bacteria

    OpenAIRE

    Dressler, Cathrin; Kües, Ursula; Nies, Dietrich H.; Friedrich, Bärbel

    1991-01-01

    Three copper-resistant, gram-negative bacteria were isolated and characterized. Of the three strains, Alcaligenes denitrificans AH tolerated the highest copper concentration (MIC = 4 mM CuSO4). All three strains showed various levels of resistance to other metal ions. A. denitrificans AH contains sequences which cross-hybridized with the mer (mercury resistance) determinant of Tn21 and the czc (cobalt, zinc, and cadmium resistance), cnr (cobalt and nickel resistance), and chr (chromate resist...

  6. Antibacterial activity of Pterocarpus santalinus

    OpenAIRE

    Manjunatha B

    2006-01-01

    Antibacterial activity of leaf and stem bark of Pterocarpus santalinus (Fabaceae) was investigated. The antibacterial activity was tested against both Gram-positive and Gram-negative organisms. Among the two extracts tested, stem bark extract exhibited broad-spectrum antibacterial activity against the tested organisms. The stem bark extract showed maximum activity against Enterobacter aerogenes, Alcaligenes faecalis, Escherichia coli, Pseudomonas aeruginosa, Proteus vulgaris, Bacillus cere...

  7. Biopolymers production with carbon source from the wastes of a beer brewery industry

    Science.gov (United States)

    Wong, Phoeby Ai Ling

    The main purpose of this study was to assess the potential and feasibility of malt wastes, and other food wastes, such as soy wastes, ice-cream wastes, confectionery wastes, vinegar wastes, milk waste and sesame oil, in the induction of biosynthesis of PHA, in the cellular assembly of novel PHA with improved physical and chemical properties, and in the reduction of the cost of PHA production. In the first part of the experiments, a specific culture of Alcaligenes latus DSM 1124 was selected to ferment several types of food wastes as carbon sources into biopolymers. In addition, the biopolymer production, by way of using malt waste, of microorganisms from municipal activated sludge was also investigated. In the second part, the experiments focused on the synthesis of biopolymer with a higher molecular mass via the bacterial strain, which was selected and isolated from sesame oil, identified as Staphylococcus epidermidis . Molecular weight and molecular weight distribution of PHB were studied by GPC. Molecular weight of PHB produced from various types of food wastes by Alcaligenes latus was higher than using synthetic sucrose medium as nutrient, however, it resulted in the reverse by Staphylococcus epidermidis. Thermal properties of biopolymers were studied by DSC and TG. Using malt wastes as nutrients by Alcaligenes latus gave a higher melting temperature. Using sucrose, confectionery and sesame oil as nutrients by Staphylococcus epidermidis gave higher melting temperature. Optimization was carried out for the recovery of microbial PHB from Alcaligenes latus. Results showed that molecular weight can be controlled by changing the hypochlorite concentration, the ratio of chloroform to hypochlorite solution and the extraction time. In addition, the determination of PHB content by thermogravimetric analysis method with wet cell was the first report in our study. (Abstract shortened by UMI.)

  8. Biodegradation of Asphalt Cement-20 by Aerobic Bacteria

    OpenAIRE

    Pendrys, John P.

    1989-01-01

    Seven gram-negative, aerobic bacteria were isolated from a mixed culture enriched for asphalt-degrading bacteria. The predominant genera of these isolates were Pseudomonas, Acinetobacter, Alcaligenes, Flavimonas, and Flavobacterium. The mixed culture preferentially degraded the saturate and naphthene aromatic fractions of asphalt cement-20. A residue remained on the surface which was resistant to biodegradation and protected the underlying asphalt from biodegradation. The most potent asphalt-...

  9. Characterization of Pseudomonas Species Isolated from the Rhizosphere of Plants Grown in Serozem Soil, Semi-Arid Region of Uzbekistan

    OpenAIRE

    Dilfuza Egamberdiyeva

    2005-01-01

    Collections of native Pseudomonas spp. are kept at the NCAM of Uzbekistan. Some of those organisms were isolated from the rhizosphere of cotton, wheat, corn, melon, alfalfa, and tomato grown in field locations within a semi-arid region of Uzbekistan. Strains used for this study were Pseudomonas alcaligenes, P. aurantiaca, P. aureofaciens, P. denitrificans, P. mendocina, P. rathonis, and P. stutzeri. Some of the pseudomonads have been characterized in this report. These strains produced enzyme...

  10. 脱窒菌のコロイド化学的性質

    OpenAIRE

    鷲谷, 亜希子; 平井, 俊朗; 林, 剛; Akiko , Washiya; Toshiaki , Hirai; Tsuyoshi, Hayashi; 帝京科学大学大学院理工学研究科; 帝京科学大学生命環境学部生命科学科; 帝京科学大学生命環境学部環境科学科

    2009-01-01

    In order to elucidate the effects of the solutes contained in waste waters; inorganic electrolytes and organic compounds, on the flocculation behavior and the denitrifying function of the denitrifiers that are employed in the biological denitrifying processes at the water purification plants. In the study, three kinds of denitrifiers which were gathered and cultured in Uenohara City, Yamanashi Prefecture; Pseudomonas aeruginosa(a bacillus with flugela), Alcaligenes sp(a bacillus with flugela)...

  11. Characterization of the first enzyme in 2,4-dichlorophenoxyacetic acid metabolism.

    OpenAIRE

    Hausinger, R P; Fukumori, F

    1995-01-01

    This paper reviews the properties of the Alcaligenes eutrophus JMP134 tfdA gene product, the enzyme responsible for the first step in 2,4-dichlorophenoxyacetic acid (2,4-D) biodegradation. The gene was overexpressed in Escherichia coli and several of its enzymatic properties were characterized. Although this enzyme catalyzes a hydroxylation reaction, it is not a monooxygenase. Rather, TfdA is an Fe(II) and alpha-ketoglutarate-dependent dioxygenase that metabolizes the latter cosubstrate to su...

  12. Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation.

    OpenAIRE

    Top, E. M.; Holben, W E; Forney, L J

    1995-01-01

    The diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degradative plasmids in the microbial community of an agricultural soil was examined by complementation. This technique involved mixing a suitable Alcaligenes eutrophus (Rifr) recipient strain with the indigenous microbial populations extracted from soil. After incubation of this mixture, Rifr recipient strains which grow with 2,4-D as the only C source were selected. Two A. eutrophus strains were used as recipients: JMP228 (2,4-D-), whi...

  13. Evidence for 4-chlorobenzoic acid dehalogenation mediated by plasmids related to pSS50.

    OpenAIRE

    Layton, A C; Sanseverino, J; Wallace, W; Corcoran, C; Sayler, G. S.

    1992-01-01

    The biodegradation of 4-chlorobiphenyl usually proceeds through the intermediate 4-chlorobenzoate. Few bacterial strains can degrade 4-chlorobiphenyl to 4-chlorobenzoate and 4-chlorobenzoate to CO2. This study demonstrates that the 4-chlorobiphenyl-degrading Alcaligenes sp. strain ALP83 can degrade 4-chlorobenzoate to 4-hydroxybenzoate. The dehalogenase activity is correlated with a 10-kb fragment carried on plasmid pSS70.

  14. Antibacterial properties of Alkaloid rich fractions obtained from various parts of Prosopis juliflora

    Directory of Open Access Journals (Sweden)

    Shachi Singh,

    2011-03-01

    Full Text Available The alkaloid rich fraction obtained from various parts of Prosopis juliflora were assessed for their antibacterial property using disc diffusion method on several Gram-negative and Gram-positive bacterial strains like E.coli, Staphylococcus aureus, Bacillus cereus, Psuedomonas putida, Klebsiella, Salmonella, Acinetobacter andAlcaligen. Strong antibacterial effect was shown by leaf, pod and flower extract, with MIC value ranging between 25μg/ml-100μg/ml. The extracts of leaves showed highest activity among all the plant parts. Klebsiella was found to be the most susceptible bacteria, whereas Acinetobacter and Alcaligen were the least susceptible. A comparison of zone of inhibition created by alkaloid rich fractions with that of standard antibiotics, ampicillin, tetracycline, chloramphenicol, oflaxacin, refampin, streptomycin and sulfa drug showed a comparable zone of inhibition. Growth of Acinetobacter and Alcaligen which were not inhibited by antibiotics, showed inhibition by the alkaloidal extracts, similarly a known ampicillin resistant E.coli strain was found to be inhibited by the plant extracts. Alkaloids present in the extracts were analysed by DART-MS. DART-MS analysis of the alkaloid rich fractions showed the presence of piperidine alkaloids.

  15. Novel approach for the ammonium removal by simultaneous heterotrophic nitrification and denitrification using a novel bacterial species co-culture.

    Science.gov (United States)

    Angar, Yassmina; Kebbouche-Gana, Salima; Djelali, Nacer-Eddine; Khemili-Talbi, Souad

    2016-03-01

    Agricultural activities lead excessive emission of ammonia nitrogen in the environment and can profoundly interfere the equilibrium of the natural ecosystems leading to their contamination. Actually, the biological purification of wastewaters is the most adopted technique thanks to its several advantages such as high performance and low energy consumption. For this reason, two novel strains of Alcaligenes sp. S84S3 and Proteus sp. S19 genus were isolated from an activated sludge and applied in the treatment of ammonium and nitrite in aqueous solution. Under the optimum operating conditions of temperature (30 °C), pH (7), carbon substrate (2 g/L of glucose) and duration of incubation time (69 h), the strain Alcaligenes sp. S84S3 could oxidize 65% of the ammonium as high as 272.72 mg-NH4(+)/L. Moreover, during 48 h, the nitrate reduction rate performed by the strain Proteus S19 was about 99 % without production of nitrite intermediate (negligible concentration). Moreover, the coculture of the strains Alcaligenes sp. S84S3 and Proteus sp. S19 could eliminate 65.83% of the ammonium ions without production of toxic forms of nitrogen oxides during a short time of incubation (118 h) at the same operational conditions with providing the aeration in the first treatment phase. The coculture of our isolated strains is assumed to have a good potential for nitrification and denitrification reactions applied in the treatment of wastewater containing ammonium, nitrite and nitrate. As a result, we can consider that the mixed culture is a practical method in the treatment of high-strength ammonium wastewater with reducing of sludge production.

  16. Screening and identification of polyhydroxyalkanoates producing bacteria and biochemical characterization of their possible application.

    Science.gov (United States)

    Sangkharak, Kanokphorn; Prasertsan, Poonsuk

    2012-01-01

    Polyhydroxyalkanoates (PHAs) accumulating bacteria were isolated under various selective conditions such as pH, salt concentrations and types of heavy metal. Fifty strains of bacterial isolates were found to belong to Bacillus, Proteus, Pseudomonas, Aeromonas, Alcaligenes and Chromobacterium, based on phenotypical features and genotypic investigation. Only twenty five bacterial isolates were selected and observed for the production of PHAs. Interestingly, bacteria belonging to Firmucutes Bacillus sp. produced a high amount of PHAs. The maximum PHAs were accumulated by B. licheniformis PHA 007 at 68.80% of dry cell weight (DCW). Pseudomonas sp., Aeromonas sp., Alcaligenes sp. and Chromobacterium sp. were recorded to produce a moderate amount of PHAs, varying from 10.00-44.32% of DCW. The enzymatic activity was preliminarily analyzed by the ratio of the clear zone diameter to colony diameter. Bacillus gave the highest ratio of hydrolysis zone which corresponds to the highest hydrolytic enzyme activities. Bacillus licheniformis PHA 007 had the highest lipase and protease activity at 2.1 and 5.1, respectively. However, the highest amylase activity was observed in Bacillus sp. PHA 023 at 1.4. Determination of metabolic characteristics was also investigated to check for their ability to consume a wide range of substrates. Bacillus, Aeromonas sp. and Alcaligenes sp. had great ability to utilize a variety of substrates. To decrease high PHA cost, different sources of cheap substrates were tested for the production of PHAs. Bacillus cereus PHA 008 gave the maximal yield of PHA production (64.09% of DCW) when cultivated in anaerobically treated POME. In addition, the accumulation of PHA copolymers such as 3-hydroxyvalerate and 3-hydroxyhexanoate was also observed in Bacillus and Pseudomomas sp. strain 012 and 045, respectively. Eight of the nine isolates accumulated a significant amount of PHAs when inexpensive carbon sources were used as substrates. Here it varied from 1

  17. Microbiological studies on petroleum and natural gas. I. Determination of hydrocarbon-utilizing bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Iizuka, H.; Komagata, K.

    1964-01-01

    Hydrocarbon-utilizing bacteria were isolated from oil-brine, soils etc. sampled in oil fields in Japan during 1956, and the following species were identified: Corynebacterium hydrocarboclastus nov. sp., 11 strains; Pseudomonas nitroreducens nov. sp., 1 strain; Pseudomonas maltophila Hugh and Ryschenkow, 5 strains: Brevibacterium lipolyticum (Huss) Breed, 2 strains; Pseudomonas desmolytica Gray and Thornton, 5 strains; Flavobacterium ferrugineum Sickles and Shaw, 1 strain; and Alcaligenes faecalis Chastellani and Chalmers, 1 strain. One difference between Gram-negative bacteria and Gram-positive bacteria was described on the basis of the ability of assimilating hydrocarbons.

  18. Market fish hygiene in Kenya.

    OpenAIRE

    Binta, G. M.; Tjaberg, T. B.; Nyaga, P. N.; Valland, M.

    1982-01-01

    Vibrio parahaemolyticus was isolated from 53 out of 584 samples (9.1%) of market fish. All strains were Kanagawa negative and were distributed as follows: sea fish 5 out of 370 samples (1.4%), shellfish 48 out of 214 samles (22.4%). Other fish spoilage microflora recovered were: Alcaligenes faecalis, Pseudomonas aeruginosa, Proteus vulgaris, Aeromonas spp. and Vibrio alginolyticus. Total aerobic counts and coliform counts per gram for the lake fish ranged from 2.6 X 10(2) to 6.6 X 10(7) and 1...

  19. BIODEGRADATION OF PETROLEUM-WASTE BY BIOSURFACTANT-PRODUCING BACTERIA

    Energy Technology Data Exchange (ETDEWEB)

    Brigmon, R; Grazyna A. Plaza, G; Kamlesh Jangid, K; Krystyna Lukasik, K; Grzegorz Nalecz-Jawecki, G; Topher Berry, T

    2007-05-16

    The degradation of petroleum waste by mixed bacterial cultures which produce biosurfactants: Ralstonia pickettii SRS (BP-20), Alcaligenes piechaudii SRS (CZOR L-1B), Bacillus subtilis (1'- 1a), Bacillus sp. (T-1) and Bacillus sp. (T'-1) was investigated. The total petroleum hydrocarbons were degraded substantially (91 %) by the mixed bacterial culture in 30 days (reaching up to 29 % in the first 72 h). Similarly, the toxicity of the biodegraded petroleum waste decreased 3 times after 30 days as compared to raw petroleum waste. Thus, the mixed bacterial strains effectively clean-up the petroleum waste and they can be used in other bioremediation processes.

  20. The intramolecular electron transfer between copper sites of nitrite reductase

    DEFF Research Database (Denmark)

    Farver, O; Eady, R R; Abraham, Z H;

    1998-01-01

    The intramolecular electron transfer (ET) between the type 1 Cu(I) and the type 2 Cu(II) sites of Alcaligenes xylosoxidans dissimilatory nitrite reductase (AxNiR) has been studied in order to compare it with the analogous process taking place in ascorbate oxidase (AO). This internal process is......(I) and the trinuclear copper centre in ascorbate oxidase, and the characteristics of the internal ET processes of these enzymes are compared. The data are consistent with the faster ET observed in nitrite reductase arising from a more advantageous entropy of activation when compared with ascorbate...

  1. Phenoxyacetic acid degradation by the 2,4-dichlorophenoxyacetic acid (TFD) pathway of plasmid pJP4: mapping and characterization of the TFD regulatory gene, tfdR.

    OpenAIRE

    Harker, A R; Olsen, R H; Seidler, R J

    1989-01-01

    Plasmid pJP4 enables Alcaligenes eutrophus JMP134 to degrade 3-chlorobenzoate and 2,4-dichlorophenoxyacetic acid (TFD). Plasmid pRO101 is a derivative of pJP4 obtained by insertion of Tn1721 into a nonessential region of pJP4. Plasmid pRO101 was transferred by conjugation to several Pseudomonas strains and to A. eutrophus AEO106, a cured isolate of JMP134. AEO106(pRO101) and some Pseudomonas transconjugants grew on TFD. Transconjugants with a chromosomally encoded phenol hydroxylase also degr...

  2. 2,4-Dichlorophenoxyacetic acid-degrading bacteria contain mosaics of catabolic genes.

    OpenAIRE

    Fulthorpe, R R; McGowan, C; Maltseva, O V; Holben, W E; Tiedje, J M

    1995-01-01

    DNA from 32 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria from diverse locations was probed with the first three genes of the well-known 2,4-D degradation pathway found in Alcaligenes eutrophus JMP134(pJP4). The majority of strains did not show high levels of homology to the first three genes of the 2,4-D degradation pathway, tfdA, -B, and -C. Most strains showed combinations of tfdA-, B-, and C-like elements that exhibited various degrees of homology to the gene probes. Strains h...

  3. Capture of a catabolic plasmid that encodes only 2,4-dichlorophenoxyacetic acid:alpha-ketoglutaric acid dioxygenase (TfdA) by genetic complementation.

    OpenAIRE

    Top, E. M.; Maltseva, O V; Forney, L J

    1996-01-01

    The modular pathway for the metabolism of 2,4-dichlorophenoxyacetic acid (2,4-D) encoded on plasmid pJP4 of Alcaligenes eutrophus JMP134 appears to be an example in which two genes, tfdA and tfdB, have been recruited during the evolution of a catabolic pathway. The products of these genes act to convert 2,4-D to a chloro-substituted catechol that can be further metabolized by enzymes of a modified ortho-cleavage pathway encoded by tfdCDEF. Given that modified ortho-cleavage pathways are compa...

  4. Organization and sequence analysis of the 2,4-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4.

    OpenAIRE

    Perkins, E J; Gordon, M P; Caceres, O.; Lurquin, P F

    1990-01-01

    Growth of Alcaligenes eutrophus JMP134 on 2,4-dichlorophenoxyacetate requires a 2,4-dichlorphenol hydroxylase encoded by gene tfdB. Catabolism of either 2,4-dichlorophenoxyacetate or 3-chlorobenzoate involves enzymes encoded by the chlorocatechol oxidative operon consisting of tfdCDEF, which converts 3-chloro- and 3,5-dichlorocatechol to maleylacetate and chloromaleylacetate, respectively. Transposon mutagenesis has localized tfdB and tfdCDEF to EcoRI fragment B of plasmid pJP4 (R. H. Don, A....

  5. The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4)

    OpenAIRE

    Leveau, J H; van der Meer, J.R.

    1996-01-01

    The tfdT gene is located upstream of and transcribed divergently from the tfdCDEF chlorocatechol-degradative operon on plasmid pJP4 of Ralstonia eutropha (formerly Alcaligenes eutrophus) JMP134. It is 684 bp long and encodes a 25-kDa protein. On the basis of its predicted amino acid sequence, the TfdT protein could be classified as a LysR-type transcriptional regulator. It has the highest degree of similarity with the proteins TcbR, ClcR, and TfdR, which are involved in the regulation of chlo...

  6. Respiratory disease (rhinotracheitis) in turkeys in Brittany, France, 1981-1982. I. Field observations and serology.

    Science.gov (United States)

    Andral, B; Louzis, C; Trap, D; Newman, J A; Bennejean, G; Gaumont, R

    1985-01-01

    During the summer of 1981, a respiratory disease epidemic occurred in turkeys in Brittany, France. Since this initial epizootic, which lasted through fall, epizootic waves similar to the initial one have occurred at approximately 6-month intervals, with smaller peaks at 2-month intervals. The epidemiology, clinical signs, and postmortem findings were highly suggestive of an epizootic of chlamydiosis. Serological tests for chlamydia, paramyxoviruses, avian influenza, adenovirus 127, mycoplasma, and Alcaligenes faecalis were conducted. The chlamydia tests were the only ones consistently positive. PMID:3985881

  7. Rhizosphere bacterial diversity and heavy metal accumulation in Nymphaea pubescens in aid of phytoremediation potential

    Directory of Open Access Journals (Sweden)

    RAISA KABEER

    2014-04-01

    Full Text Available The present work aims to characterize the bacterial diversity of the rhizosphere system of Nymphaea pubescens and the sediment system where it grows naturally. Heavy metal content in the sediment and Nymphea plant from the selected wetland system were also studied. Results of the current study showed that the concentration of copper, zinc and lead in the sediment ranged from 43 to 182 mg/Kg, from 331 to 1382 mg/Kg and from 121 to 1253 mg/Kg, respectively. Cadmium concentration in sediment samples was found to be zero and the order of abundance of heavy metals in the sediment samples was Zn>Pb>Cu>Cd. The abundance patterns of heavy metals in leaf, petiole and root were Cd>Cu>Pb>Zn. Microbial load in rhizosphere of Nymphea pubescens ranged from 93×102 to 69×103 and that of sediment was 62×102 to 125×103. Bacterial load in rhizosphere was higher than that of growing sediment. Four bacterial genera were identified from the rhizosphere of Nymphaea pubescens which include Acinetobacter, Alcaligens, Listeria and Staphylococcus. Acinetobacter, Alcaligens and Listeria are the three bacterial genera isolated from sediment samples. Copper resistance studies of the 14 bacterial isolates from rhizosphere and 7 strains from sediment samples revealed that most of them showed low resistance (<100 μg/ml and very few isolates showed high resistance of 400-500 μg/ml.

  8. Chemical resistance of the gram-negative bacteria to different sanitizers in a water purification system

    Directory of Open Access Journals (Sweden)

    Penna Thereza CV

    2006-08-01

    Full Text Available Abstract Background Purified water for pharmaceutical purposes must be free of microbial contamination and pyrogens. Even with the additional sanitary and disinfecting treatments applied to the system (sequential operational stages, Pseudomonas aeruginosa, Pseudomonas fluorescens, Pseudomonas alcaligenes, Pseudomonas picketti, Flavobacterium aureum, Acinetobacter lowffi and Pseudomonas diminuta were isolated and identified from a thirteen-stage purification system. To evaluate the efficacy of the chemical agents used in the disinfecting process along with those used to adjust chemical characteristics of the system, over the identified bacteria, the kinetic parameter of killing time (D-value necessary to inactivate 90% of the initial bioburden (decimal reduction time was experimentally determined. Methods Pseudomonas aeruginosa, Pseudomonas fluorescens, Pseudomonas alcaligenes, Pseudomonas picketti, Flavobacterium aureum, Acinetobacter lowffi and Pseudomonas diminuta were called in house (wild bacteria. Pseudomonas diminuta ATCC 11568, Pseudomonas alcaligenes INCQS , Pseudomonas aeruginosa ATCC 15442, Pseudomonas fluorescens ATCC 3178, Pseudomonas picketti ATCC 5031, Bacillus subtilis ATCC 937 and Escherichia coli ATCC 25922 were used as 'standard' bacteria to evaluate resistance at 25°C against either 0.5% citric acid, 0.5% hydrochloric acid, 70% ethanol, 0.5% sodium bisulfite, 0.4% sodium hydroxide, 0.5% sodium hypochlorite, or a mixture of 2.2% hydrogen peroxide (H2O2 and 0.45% peracetic acid. Results The efficacy of the sanitizers varied with concentration and contact time to reduce decimal logarithmic (log10 population (n cycles. To kill 90% of the initial population (or one log10 cycle, the necessary time (D-value was for P. aeruginosa into: (i 0.5% citric acid, D = 3.8 min; (ii 0.5% hydrochloric acid, D = 6.9 min; (iii 70% ethanol, D = 9.7 min; (iv 0.5% sodium bisulfite, D = 5.3 min; (v 0.4% sodium hydroxide, D = 14.2 min; (vi 0.5% sodium

  9. Identification of pectin-degrading strains isolated from tobacco strips and evaluation of its pectinase activity%片烟产果胶酶细菌的鉴定及酶活测定

    Institute of Scientific and Technical Information of China (English)

    代同成; 范坚强; 郑湖南; 包可翔; 王永泽; 王金华

    2011-01-01

    以果胶为碳源,对津巴布韦片烟烟叶表面产果胶酶细菌进行分离,采用16S rDNA限制性酶切片段长度多态性分析(ARDRA)和测序方法,结合形态学、生理生化实验,对所分离产果胶酶菌株进行鉴定,同时研究培养时间、温度、起始pH、接种量对菌株产酶的影响。结果表明,从津巴布韦片烟烟叶表面分离得到的产果胶酶菌株主要为芽孢杆菌属的枯草芽孢杆菌Bacillus subtilis和产碱菌属的粪产碱菌Alcaligenes faecalis。在所分离的菌株中,枯草芽孢杆菌T10酶活力最高,以6%的接种量,在温度为35℃、起始pH为7.5条件下培养48-56 h,其果胶酶酶活为571 U/mg,聚半乳糖醛酸裂解酶酶活为297 U/mg。%Bacterial strains with pectinase enzyme activity were isolated from Zimbabwe tobacco strips using pectin as carbon source. ARDRA patterns of 16S rDNA combined with 16S rDNA sequence analysis, physiological and biochemical experiments were used to identify the isolated strains. Different conditions including incubating time, growth temperature, initial pH and inoculation quantity for the enzyme production were also studied. The results indicated that bacteria isolated from Zimbabwe tobacco strips with high pectin-degrading ability mainly belong to Bacillus subtilis (genus Bacillus) and Alcaligenes faecalis (genus Alcaligenes). Among these strains, Bacillus subtilis strain T10 possessed the highest pectinase activity (571 U/mg) and polygalacturonate lyase activity (297 U/mg) under its opti-mum enzyme fermantation conditions, which use 6% (V/V) culture fluid as the inoculum for enyme production in the pH 7.5 fermentation medium at 35 ℃ for 48?56 h.

  10. Factors influencing the biosorption of gadolinium by micro-organisms and its mobilisation from sand

    International Nuclear Information System (INIS)

    The present work was devoted to the study of the biosorption capacities of various microbial species (Bacillus subtilis, Pseudomonas aeruginosa, Ralstonia metallidurans CH34 previously Alcaligenes eutrophus CH34, Mycobacterium smegmatis, Saccharomyces cerevisiae) for ions of the lanthanide gadolinium (Gd3+). The uptake by sand of this element was also measured. Saturation curves and Scatchard models were established for all biosorbants used in this work. The results enabled us to determine the binding affinities and the maximum capacities for biosorption of Gd3+, which ranged from 350 μmol g-1 for B. subtilis to 5.1 μmol g-1 for S. cerevisiae. This study demonstrated the usefulness of optimisation of experimental conditions in biosorption investigations. Experimental results showed that bisorption could be influenced by the growth stage and by the composition of the growth medium of microbial cells. Finally, particular attention was given to the transfer of gadolinium ions from a loaded sand to a bacterial suspension. (orig.)

  11. Effect of various sources of organic carbon and high nitrite and nitrate concentrations on the selection of denitrifying bacteria. II. Continuous cultures in packed bed reactors.

    Science.gov (United States)

    Błaszczyk, M

    1983-01-01

    The effect of different organic compounds, nitrites and nitrates at the concentration of 1,000 mg N/l on the quantitative and strain-specific selection of denitrifying bacteria was determined in anaerobic packed bed reactors. Both the source of carbon and nitrogen form influenced strain specificity and the frequency of occurrence of denitrifying bacteria. The frequency of denitrifying bacteria within packed bed reactor ranged in different media from 11% (glucose and nitrates) to 100% (methanol and ethanol with nitrates). A single species selection was observed in the presence of nitrites within packed bed reactor: Pseudomonas aeruginosa in medium with acetate. Pseudomonas stutzeri in medium with ethanol, Pseudomonas mendocina in medium with methanol and Pseudomonas fluorescens in medium with glucose. When nitrates were present in packed bed reactor, the dominating bacteria were: P. stutzeri in medium with acetate, P. fluorescens in medium with ethanol, Paracoccus denitrificans in medium with methanol and Alcaligenes faecalis in medium with glucose. PMID:6194668

  12. Microbial desulfurization of dibenzothiophene

    Energy Technology Data Exchange (ETDEWEB)

    van Afferden, M.; Schacht, S.; Beyer, M.; Klein, J.

    1988-01-01

    Concerning the sulfur removal from coal before combustion there is considerable interest in microbial methods as pyrite oxidation and elimination of organically bound sulfur from coal. Using organic sulfur compounds relevant for coal the mechanism of desulfurization was investigated. The authors isolated a defined mixed culture (FODO) able to utilize dibenzothiophene as sole sulfur source for growth, while benzoate was used as carbon source. The mixed culture FODO consists of an Alcaligenes denitrificans subspecies and a Brevibacterium species. Two metabolites of the degradation and dibenzothiophene-5-dioxide. The subsequent degradation of dibenzothiophene-5-dioxide used as sole sulfur source results in a release of sulfate ions into the medium. The results suggest a sulfur specific oxidative mechanism for removal of sulfur from dibenzothiophene.

  13. Identification and analysis of polyaromatic hydrocarbons (PAHs)--biodegrading bacterial strains from refinery soil of India.

    Science.gov (United States)

    Chaudhary, Priyanka; Sahay, Harmesh; Sharma, Richa; Pandey, Alok Kumar; Singh, Shashi Bala; Saxena, A K; Nain, Lata

    2015-06-01

    Polyaromatic hydrocarbons (PAHs) utilizing bacteria were isolated from soils of seven sites of Mathura refinery, India. Twenty-six bacterial strains with different morphotypes were isolated. These strains were acclimatized to utilize a mixture of four polycyclic aromatic hydrocarbons, i.e., anthracene, fluorene, phenanthrene, and pyrene, each at 50 mg/L concentration as sole carbon source. Out of total isolates, 15 potent isolates were subjected to 16S rDNA sequencing and identified as a member of diverse genera, i.e., Bacillus, Acinetobacter, Stenotrophomonas, Alcaligenes, Lysinibacillus, Brevibacterium, Serratia, and Streptomyces. Consortium of four promising isolates (Acinetobacter, Brevibacterium, Serratia, and Streptomyces) were also investigated for bioremediation of PAH mixture. This consortium was proved to be efficient PAH degrader resulting in 40-70 % degradation of PAH within 7 days. Results of this study indicated that these genera may play an active role in bioremediation of PAHs. PMID:26026847

  14. The influence of bioaugmentation and biosurfactant addition on bioremediation efficiency of diesel-oil contaminated soil: feasibility during field studies.

    Science.gov (United States)

    Szulc, Alicja; Ambrożewicz, Damian; Sydow, Mateusz; Ławniczak, Łukasz; Piotrowska-Cyplik, Agnieszka; Marecik, Roman; Chrzanowski, Łukasz

    2014-01-01

    The study focused on assessing the influence of bioaugmentation and addition of rhamnolipids on diesel oil biodegradation efficiency during field studies. Initial laboratory studies (measurement of emitted CO2 and dehydrogenase activity) were carried out in order to select the consortium for bioaugmentation as well as to evaluate the most appropriate concentration of rhamnolipids. The selected consortium consisted of following bacterial taxa: Aeromonas hydrophila, Alcaligenes xylosoxidans, Gordonia sp., Pseudomonas fluorescens, Pseudomonas putida, Rhodococcus equi, Stenotrophomonas maltophilia, Xanthomonas sp. It was established that the application of rhamnolipids at 150 mg/kg of soil was most appropriate in terms of dehydrogenase activity. Based on the obtained results, four treatment methods were designed and tested during 365 days of field studies: I) natural attenuation; II) addition of rhamnolipids; III) bioaugmentation; IV) bioaugmentation and addition of rhamnolipids. It was observed that bioaugmentation contributed to the highest diesel oil biodegradation efficiency, whereas the addition of rhamnolipids did not notably influence the treatment process. PMID:24291585

  15. [Computational fluid dynamics simulation of different impeller combinations in high viscosity fermentation and its application].

    Science.gov (United States)

    Dong, Shuhao; Zhu, Ping; Xu, Xiaoying; Li, Sha; Jiang, Yongxiang; Xu, Hong

    2015-07-01

    Agitator is one of the essential factors to realize high efficient fermentation for high aerobic and viscous microorganisms, and the influence of different impeller combination on the fermentation process is very important. Welan gum is a microbial exopolysaccharide produced by Alcaligenes sp. under high aerobic and high viscos conditions. Computational fluid dynamics (CFD) numerical simulation was used for analyzing the distribution of velocity, shear rate and gas holdup in the welan fermentation reactor under six different impeller combinations. The best three combinations of impellers were applied to the fermentation of welan. By analyzing the fermentation performance, the MB-4-6 combination had better effect on dissolved oxygen and velocity. The content of welan was increased by 13%. Furthermore, the viscosity of production were also increased. PMID:26647585

  16. Dynamism of PGPR in bioremediation and plant growth promotion in heavy metal contaminated soil.

    Science.gov (United States)

    Patel, P R; Shaikh, S S; Sayyed, R Z

    2016-04-01

    Heavy metal contamination, particularly of cultivable lands, is a matter of concern. Bioremediation helps in reversing such contamination to certain extent. Here, we report isolation, polyphasic identification and the role of siderophore producing rhizobacteria Alcaligenes feacalis RZS2 and Pseudomonas aeruginosa RZS3 in bioremediation of heavy metal contaminated soil and plant growth promotion activity in such contaminated soil. Siderophore produced by A. feacalis RZS2 and P. aeruginosa RZS3 strains chelated various heavy metal ions like MnCl₂.4H₂O, NiCl₂.6H₂O, ZnCl₂, CuCl₂ and CoCl₂ other than FeCl₃.6H2O at batch scale. Their bioremediation potential was superior over the chemical ion chelators like EDTA and citric acid. These isolates also promoted growth of wheat and peanut seeds sown in heavy metal contaminated soil. Effective root colonizing ability of these isolates was observed in wheat and peanut plants.

  17. Imipenem resistance in nonfermenters causing nosocomial urinary tract infections.

    Directory of Open Access Journals (Sweden)

    Taneja N

    2003-07-01

    Full Text Available Nonfermenting gram-negative bacilli (nonfermenters have emerged as important nosocomial pathogens causing opportunistic infections in immunocompromised hosts. These organisms show high level of resistance to b-lactam agents, fluoroquinolones and aminoglycosides. Imipenem is a carbapenem antibiotic, which can be very useful for treatment of infections caused by nonfermenters. Eighty-five nonfermenters causing nosocomial UTI were tested for MIC to imipenem by agar dilution method. Resistance to other antimicrobial agents was compared between imipenem sensitive (S and resistance (R groups. Overall 36.4% of nonfermenters were resistant to imipenem. Forty two percent of P. aeruginosa and 18.5% of Acinetobacter baumanii were imipenem resistant. Other nonfermenters showed variable resistance, resistance in Alcaligenes spp. being very high. More than 70% of the nonfermenters were resistant to ceftazidime, gentamicin and ciprofloxacin. Piperacillin and amikacin had the best in vitro susceptibility. No significant difference was found in the antibiotic susceptibility profile among imipenem sensitive (S or resistant (R strains.

  18. Polymicrobial Infection of the Cornea Due to Contact Lens Wear

    Science.gov (United States)

    Sızmaz, Selçuk; Bingöllü, Sibel; Erdem, Elif; Kibar, Filiz; Koltaş, Soner; Yağmur, Meltem; Ersöz, Reha

    2016-01-01

    A 38-year-old male presented with pain and redness in his left eye. He had a history of wearing contact lenses. His ophthalmic examination revealed a large corneal ulcer with surrounding infiltrate. Cultures were isolated from the contact lenses, lens solutions, storage cases, and conjunctivae of both eyes and also corneal scrapings of the left eye. Fortified vancomycin and amikacin drops were started hourly. Culture results of conjunctivae of each eye and left cornea were positive for Pseudomonas aeruginosa; cultures from the contact lenses, lens solution and storage case of both eyes revealed Pseudomonas aeruginosa and Alcaligenes xylosoxidans. Polymerase chain reaction of the corneal scraping was positive for Acanthameoba. The topical antibiotics were changed with ones that both bacteria were sensitive to and anti-amoebic therapy was added. The patient had two recurrences following initial presentation despite intensive therapy. Keratitis occurred due to multiple pathogens; the relapsing course despite adequate therapy is potentially associated with this polymicrobial etiology. PMID:27800266

  19. Identification and analysis of hydrogen uptake (HUP) genes of several associative nitrogen fixing bacteria with rice plant

    International Nuclear Information System (INIS)

    All of the tested species (strains) in this work can reduce TTC, suggesting that they contain hydrogen uptake hydrogenase. Hybridization with Rhizobium japonicum hup gene indicated that there was homology between restricted DNA and the probe for Alcaligenes faecalis A15, Enterobacter cloacae EnSs, Klebsiella planticola DWUL2 and Pseudomonas saccharophila. Negative results were obtained for E. cloacae E26 and K. oxytoca NG13. Hup genes of A. faecalis A15 were located on chromosomal DNA, however, it was located on the larger plasmid for E. cloacae EnSs. Nif gene and hup gene are located on the same replicon. Hup gene from different hup+ microorganisms was not homology inevitably

  20. Killer toxin from a novel killer yeast Pichia kudriavzevii RY55 with idiosyncratic antibacterial activity.

    Science.gov (United States)

    Bajaj, Bijender Kumar; Raina, Sandeepu; Singh, Satbir

    2013-08-01

    The killer phenomenon of yeast may have technological implications in many areas like beverage fermentation, food technology, biological control in agriculture, and in medicine. In the present study the killer phenomenon in Pichia kudriavzevii (P. kudriavzevii RY55) is being reported for the first time. The P. kudriavzevii RY55 toxin exhibited excellent antibacterial activity against several pathogens of human health significance such as Escherichia coli, Enterococcus faecalis, Klebsiella sp., Staphylococcus aureus, Pseudomonas aeruginosa and Pseudomonas alcaligenes. Killer toxin was purified to homogeneity by using ammonium sulphate precipitation and ion exchange chromatography and characterized for few properties. P. kudriavzevii RY55 killer toxin may be of vast significance in the development of novel antimicrobial chemotherapeutic agents, new bio-based safer candidates for food preservation and biocontrol, and starter cultures for fermentation industries. PMID:22961241

  1. Effect of PGR producing bacterial strains isolated from vermisources on germination and growth of Vigna unguiculata (L. Walp.

    Directory of Open Access Journals (Sweden)

    Anandharaj Marimuthu

    2014-12-01

    Full Text Available Nineteen bacterial strains were isolated from vermisources andscreened for Indole-3-acetic acid (IAA production among themonly nine strains produce IAA and they were identified asStreptococcus spp., Micrococcus spp., Klebsiella spp., Bacillus spp., Enterobacter spp., Escherichia spp., Alcaligenes spp., Erwinia spp., and Pseudomonas spp. Among all other strains Bacillus sp. showed the higher IAA production hence selected for further molecular analysis and confirmed as Bacillus cereus. The B. cereus was grown in nutrient broth supplemented with different concentrations (1, 2, 3, 4 and 5mg/ml of tryptophan for seven days at pH 7 and at 37ºC. Crude IAA was used for in vitro phytostimulatory studies using Vigna unguiculata (L. Walp. The plant growth parameters were analyzed at different day intervals (5, 10 and 15 days. Supplementation of 5 ml crude IAA (2mg/ml of tryptophan dynamically enhances the plant growth parameters after 15 days.

  2. Lipases microbianas na produção de ésteres formadores de aroma

    Directory of Open Access Journals (Sweden)

    Gabriela A. Macedo

    1997-08-01

    Full Text Available Foram testadas cinco lipases microbianas produzidas no Laboratório de Bioquímica de Alimentos-FEA-UNICAMP, quanto à capacidade de catalisar a síntese de ésteres formadores de aroma por esterificação em meio isento de solvente orgânico. A natureza da enzima assim como o tamanho da cadeia dos ácidos afetaram as taxas de conversão obtidas.Os melhores resultados obtidos foram 88 % de conversão na síntese de laurato de isoamila e 72% para propionato de isoamila pela lipase de Rhizopus sp após 24 horas de incubação, seguido de 82% de conversão na síntese de acetato de isopropila por Alcaligenes sp após 24 horas de incubação.

  3. Screening and identification of bacterial strain against Staphyloccocus aureus%金黄色葡萄球菌拮抗菌株的筛选及鉴定

    Institute of Scientific and Technical Information of China (English)

    李成海; 贠建民; 艾对元; 张紊玮; 颜东方

    2013-01-01

    An antagonistic bacterial strain against foodborne pathogen Staphyloccocus aureus was isolated and screened from the drought soil of Gansu central habitat.The minimum inhibitory concentration dilute gradient of the fermentation broth and antibacterial spectrum were determined. The species of the antagonistic bacteria was identified through morphological,physiological and biochemical characteristics and 16S rDNA method.The results showed that the antagonistic bacterial strain against Staphyloccocus aureus also had antagonism against Escherichia coli, Lactobacillus plantarum and Stapyloccocush epidermidis. Its minimum inhibitory concentration dilute gradient against Staphyloccocus aureus was 10-6 and the antagonistic bacteria was Alcaligenes sp.%从甘肃中部干旱生境土壤中分离筛选到一株对食源性致病菌金黄色葡萄球菌具有抑制作用的拮抗菌,对其发酵液抑菌最低浓度稀释梯度及抑菌谱进行了测定,并通过形态学、生理生化及16S rDNA分子生物学方法鉴定了其种属.结果表明,该金黄色葡萄球菌拮抗菌株还对大肠杆菌、植物酸杆菌和表皮葡萄球菌具有抑制作用,其发酵液对金黄色葡萄球菌抑菌最低浓度稀释梯度为10-6,经鉴定,该拮抗菌为产碱杆菌属菌株Alcaligenes sp..

  4. Numerically dominant denitrifying bacteria from world soils.

    Science.gov (United States)

    Gamble, T N; Betlach, M R; Tiedje, J M

    1977-04-01

    Nineteen soils, three freshwater lake sediments, and oxidized poultry manure were examined to determine the dominant denitrifier populations. The samples, most shown or expected to support active denitrification, were from eight countries and included rice paddy, temperate agricultural, rain forest, organic, and waste-treated soils. Over 1,500 organisms that could grow anaerobically on nitrate agar were isolated. After purification, 146 denitrifiers were obtained, as verified by production of N(2) from NO(3) (-). These isolates were characterized by 52 properties appropriate for the Pseudomonas-Alcaligenes group. Numerical taxonomic procedures were used to group the isolates and compare them with nine known denitrifier species. The major group isolated was representative of Pseudonomas fluorescens biotype II. The second most prevalent group was representative of Alcaligenes. Other Pseudomonas species as well as members of the genus Flavobacterium, the latter previously not known to denitrify, also were identified. One-third of the isolates could not utilize glucose or other carbohydrates as sole carbon sources. Significantly, none of the numerically dominant denitrifiers we isolated resembled the most studied species: Pseudomonas denitrificans, Pseudomonas perfectomarinus, and Paracoccus denitrificans. Denitrification appears to be a property of a very diverse group of gram-negative, motile bacteria, as shown by the large number (22.6%) of ungrouped organisms. The diversity of denitrifiers from a given sample was usually high, with at least two groups present. Denitrifiers, nitrite accumulators, and organisms capable of anaerobic growth were present in the ratio of 0.20+/-0.23:0.81+/-0.23:1. There were few correlations between their numbers and the sample characteristics measured. However, the temperatures at which isolates could grow were significantly related to the temperatures of the environments from which they were isolated. Regression analysis revealed few

  5. Survey of Ability of Activated Sludge Isolated Bacteria in Removal of RB-B Dyestuff from Aqueous Medium

    Directory of Open Access Journals (Sweden)

    Z Javadi

    2011-01-01

    Full Text Available "n "n "nBackgrounds and Objectives: Reactive dyestuff has potential of toxicity, carcinogenesis and mutagenesis for mammals and aquatic organisms. The current physical and chemical methods such as adsorption, coagulation, precipitation, filtration and ... can been used for removing of dyestuff. Biological treatment which is effective and economic for decontamination of dyestuff wastewaters was preferred because of limitation and difficulty of physicochemical methods. In order to investigate the trend of pollution reduction of color compounds, ability of Remazol Black-B dyestuff removal from aqueous medium by bacterial consortium under anoxic conditions was studied."nMaterials and Methods: The mix culture of bacteria from textile industries activated sludge was enriched in luria broth medium containing RB-B dyestuff as a carbon source. Then biodegradation was assessed in 4 batch reactors. Microbial population of bacterial and decolorization quantities of samples were detected by MPN and UV-Vis spectrophotometer."nResults: Decolorization efficiency by the bacterial consortium was obtained more than 99% for 50 and 250 mg/L concentrations in 72 and 144 h (3 and 6 days respectively, while for the initial concentration of 500 mg/L was 98.1in 240 h (10 days of biodegradation period. Dyestuff reduction rate after completed removal was about 0.69, 1.74,2 mg/L/h for initial concentration of 50, 250, 500 mg/L respectively."nConclusion: Results showed that Alcaligenes denitrificans and Alcaligenes xylosoxidans bacteria"nwhich were isolated from activated sludge have good potential of RB-B dyestuff removal and this removal is depending on primary concentration of dye. Removal efficiency increased as primary concentration went up.

  6. Identification and characterization of a new gene from Variovorax paradoxus Iso1 encoding N-acyl-D-amino acid amidohydrolase responsible for D-amino acid production.

    Science.gov (United States)

    Lin, Pei-Hsun; Su, Shiun-Cheng; Tsai, Ying-Chieh; Lee, Chia-Yin

    2002-10-01

    An N-acyl-d-amino acid amidohydrolase (N-D-AAase) was identified in cell extracts of a strain, Iso1, isolated from an environment containing N-acetyl-d-methionine. The bacterium was classified as Variovorax paradoxus by phylogenetic analysis. The gene was cloned and sequenced. The gene consisted of a 1467-bp ORF encoding a polypeptide of 488 amino acids. The V. paradoxusN-D-AAase showed significant amino acid similarity to the N-acyl-d-amino acid amidohydrolases of the two eubacteria Alcaligenes xylosoxydans A-6 (44-56% identity), Alcaligenes facelis DA1 (54% identity) and the hyperthermophilic archaeon Pyrococcus abyssi (42% identity). After over-expression of the N-D-AAase protein in Escherichia coli, the enzyme was purified by multistep chromatography. The native molecular mass was 52.8 kDa, which agreed with the predicted molecular mass of 52 798 Da and the enzyme appeared to be a monomer protein by gel-filtration chromatography. A homogenous protein with a specific activity of 516 U.mg-1 was finally obtained. After peptide sequencing by LC/MS/MS, the results were in agreement with the deduced amino acid sequence of the N-D-AAase. The pI of the enzyme was 5.12 and it had an optimal pH and temperature of 7.5 and 50 degrees C, respectively. After 30 min heat treatment at 45 degrees C, between pH 6 and pH 8, 80% activity remained. The N-D-AAase had higher hydrolysing activity against N-acetyl-d-amino acid derivates containing d-methionine, d-leucine and d-alanine and against N-chloroacetyl-d-phenylalanine. Importantly, the enzyme does not act on the N-acetyl-l-amino acid derivatives. The enzyme was inhibited by chelating agents and certain metal ions, but was activated by 1 mm of Co2+ and Mg2+. Thus, the N-D-AAase from V. paradoxus can be considered a chiral specific and metal-dependent enzyme. PMID:12354118

  7. Analysis On Bacteria Biodiversity in Flax and Jute Retting Pond%亚麻与黄麻沤麻池的细菌生物多样性分析

    Institute of Scientific and Technical Information of China (English)

    张兴群; 原月梦; 孔德枝; 郁崇文; 金关荣; 傅佳佳; 丁若垚

    2015-01-01

    In this study, bacteria strains isolated from flax and jute retting pond were studied. Tra-ditional microbiology method and molecular biology method were used to analyze bacteria biodiversity. The results showed that 9 isolated strains of bacteria belong to members of 3 genuses that four strains are classified into Alcaligenes sp. , four strains are classified into Bacillus sp. and one strain are classified in-to Stenotrophomonas sp. . Phylogenetic analysis showed that all these strains are close to Stenotroph-omona s sp. , Pseudomonas sp. and Bacillus sp. which were recognized as degumming bacteria in genetic relationship.%本研究以亚麻与黄麻两用沤麻池中的沤麻液为研究对象,取样后富集培养分离得到9株脱胶细菌,通过传统微生物学研究手段与分子生物学系统发育分析相结合的方法进行生物多样性研究。研究结果表明:9种细菌分别聚类为产碱菌属( Alcaligenes sp.)4株,芽孢杆菌属( Bacillus sp.)4株,寡氧单胞菌属( Stenotrophomonas sp.)1株。系统发育分析发现9种细菌从亲缘关系上较为接近单胞菌属Stenotrophomonas sp.,假单胞菌属Pseudomonas sp.和芽孢杆菌属Bacillus sp.。这三类菌属也是目前已知细菌中较为常见的脱胶菌属。说明该9种细菌与脱胶菌属关系较近,具有进一步研究的可能。

  8. Microbiology of airway disease in a cohort of patients with Cystic Fibrosis

    Directory of Open Access Journals (Sweden)

    Carnovale Vincenzo

    2006-01-01

    Full Text Available Abstract Background Recent reports document an increasing incidence of new Gram-negative pathogens such as Stenotrophomonas maltophilia and Alcaligenes xylosoxidans isolated from patients with Cystic Fibrosis, along with an increase in common Gram-negative pathogens such as Pseudomonas aeruginosa and Burkholderia cepacia complex. Furthermore, the increase in multidrug-resistance of such organisms makes the therapeutic management of these patients more problematic. Therefore, careful isolation and identification, and accurate studies of susceptibility to antibiotics are critical for predicting the spread of strains, improving therapeutic measures and facilitating our understanding of the epidemiology of emerging pathogens. The first aim of this study was to determine the incidence and the prevalence of colonization by Gram-negative organisms isolated from respiratory samples of Cystic Fibrosis patients in the Regional Referral Cystic Fibrosis Centre of Naples; the second was to evaluate the spectrum of multidrug-resistance of these organisms. Methods Patients (n = 300 attending the Regional Cystic Fibrosis Unit were enrolled in this study over 3 years. Sputum was processed for microscopic tests and culture. An automated system, Phoenix (Becton Dickinson, Sparks, Maryland, USA, was used for phenotypic identification of all strains; the API 20 NE identification system (bioMérieux, Marcy l'Etoile, France was used when the identification with the Phoenix system was inaccurate. A PCR-RFLP method was used to characterize the organisms in the Burkholderia cepacia complex. A chemosusceptibility test on microbroth dilutions (Phoenix was used. Primary outcomes such as FEV1 were correlate with different pathogens. Results During the period of study, 40% of patients was infected by Pseudomonas aeruginosa, 7% by Burkholderia cepacia complex, 11% by Stenotrophomonas maltophilia and 7% by Alcaligenes xylosoxidans. Of the strains isolated, 460 were multidrug

  9. 污水处理活性污泥微生物群落多样性研究%Microbial Population Diversity of Activated Sludge for Wastewater Treatment

    Institute of Scientific and Technical Information of China (English)

    金浩; 李柏林; 欧杰; 陈兰明

    2012-01-01

    为研究污水处理活性污泥微生物多样性,提取了活性污泥宏基因组DNA,并采用细菌通用引物27F和1492R扩增了上海污泥厂活性污泥细菌16S rDNA片段,构建了细菌16S rDNA克隆文库,并对该文库中的微生物群落进行了分析.共获得200条高质量序列并建立系统发育树,结果显示活性污泥主要的细菌类群为变形菌门(Proteobacteria)(91.9%)、厚壁菌门(Firmicures)(4.6%)、拟杆菌门(Bacteroidetes)(2%)、绿弯菌门(Chloroflexi)(0.5%)、硝化螺菌门(Nitrospirae)(1%).其中,明显的优势菌群为Alcaligenes feacalis(55%)、Pseudomonas aeruginosa(12.8%)和Stenotrophomonas(12.8%),优势菌的产酶能力在活性污泥中显示生态修复功能菌的作用.%In order to study the microbial diversity of activated sludge (AS) for wastewater treatment, the macro-ge-nomic DNA of the AS was extracted from a wastewater factory in Shanghai. The 16S rDNA of the AS bacteria was amplified using bacteria general primers 27F and 1492R to construct the bacterial 16S rDNA clone library, and analyzed the microbial population of the library. All together 200 bands of high quality sequences were obtained and established a phylogenetic tree. The results showed that the main bacterial population of the AS was the phyla of Proteobacteria (91.9% ) , Firmicutes (4.6% ) , Bacteroidetes (2% ) , Chloroflexi (0.5% ) , Nitrospirae (1% ). Among them Al-caligenes feacalis (55% ) , Pseudomonas aeruginosa ( 12. 8% ) , and Stenolrophomonas ( 12. 8% ) were noticeably dominant bacterial population, enzyme production capacity of the dominant bacteria showed the ecological restoration function in the AS.

  10. Far from superficial: microbial diversity associated with the skin and mucus of fish

    Science.gov (United States)

    Cipriano, Rocco C.; Dove, Alistair; Cipriano, R.C.; Bruckner, A.W.; Shchelkunov, I.S.

    2011-01-01

    During horizontal or water-borne infection involving an obligate pathogen (e.g. – Aeromonas salmonicida, cause of furunculosis), the pathogen interacted with and influenced the microbial diversity of the dermal mucus of fish. Prior to infection, the prevalent bacterial flora cultured from juvenile Atlantic salmon (Salmo salar) included Pseudomonas fluorescens, Comomonas terrigenia, Acinetobacter sp., Moraxella sp., Pseudomonas dimunita, Alcaligenes denitrificans, Pseudomonas pseudoalcaligenes, and Pseudomonas alcaligenes, Serratia liquefaciens, Aeromonas hydrophila, other motile Aeromonas spp., and Corynebacterium aquaticum. After A. salmonicida was initially detected in this population as an external mucus infection, Acinetobacter sp., Moraxella sp., C. terrigenia, P. fluorescens, and P. dimunita, Staphylococcus sp., and A. hydrophila, were also present in appreciable numbers. Within several weeks, however, the A. salmonicida infection amplified and composed 78% of the total flora in the mucus. Only P. dimunita (4%). P. fluorescens (2%), and C. terrigenia (1%) were cultured at that time and more than a third of these fish showed evidence of a systemic A. salmonicida infection within their kidneys. Eight weeks after oral oxytetracycline treatments, A. salmonicida was no longer isolated from the mucus or kidneys of any fish and glucose inert or other oxidative microbes (e.g., P. fluorescens, C. terrigenia, Acinetobacter sp., Moraxella sp.) were beginning to repopulate the external surface of the salmon in increasing frequency. Still present and composing fairly large percentages of the total flora were A. hydrophila, as well as Enterobacter sp., and P. putrefaciens. A normal microbial diversity was re-established as the fish recovered. In another investigation, reduced biological diversity was noted in the dermal mucus among smallmouth bass that were sampled from the Jackson River (Covington, VA). In these fish, A. hydrophila and P. putrefaciens were the two

  11. phbA基因对拟南芥质体转化及花粉表型分析%Genetic Transformation of phbA Gene into Arabidopsis thaliana Plastid and Pollen Phenotype of Transgenic Plants

    Institute of Scientific and Technical Information of China (English)

    杨正安; 丁玉梅; 吴兴恩; 迟淑娟; 何雍琴; 张应华

    2011-01-01

    采用来源于产碱杆菌(Alcaligenes eutrophus)的PHB合成酶基因phbA,经PCR扩增后,将验证正确的phbA插入到烟草质体表达载体pBio3-GFP中,取代载体中的gfp,形成prrn-phbA-aadA-TpsbA-ter表达盒,得到质体表达载体pCTHBA,通过基因枪介导,用包裹有质粒pCTHBA的金粉子弹轰击拟南芥无菌苗叶片,经壮观霉素筛选后获得拟南芥抗性植株12株;PCR验证初步表明,phbA已整合进拟南芥的质体基因组中;对转基因拟南芥植株的花器官表型和花粉显微观察表明,phbA基因在拟南芥中得到表达,显现出雄性不育的性状.%The most effective method in hybrid breeding is that many male sterility lines have been exploited for the production of F1 hybrid seeds.Based on the previously reported sequences of phbA gene, cloned from (Alcaligenes eutrophus) coding β-ketothiolase, we amplified phbA gene from plastid pBHR68 by PCR.After sequencing, digesting and ligasing, we substituted phbA gene for gfp gene in plastid vector pBio3-GFP,thus constructed plastid transformation vector pCTHBA that carries the expression cassette of prrn-phbA-aadA-TpsbA-ter.Then the vector was transformed into plastid of Arabidopsis thaliana using PDS-1000/He biolistic particle delivering system.We totally obtained 12 transgenic plants.The further PCR analysis fundamentally indicated that the phbA gene was intergrated into the plastid genome of A.thaliana.All 12 transgenic plants performed the male-sterile phenotype with 11 plants were lacking stamens and 1 plant failed to produce viable pollen by phenotype examination and microscopy scanning.

  12. Humus bacteria of Norway spruce stands: plant growth promoting properties and birch, red fescue and alder colonizing capacity.

    Science.gov (United States)

    Elo; Maunuksela; Salkinoja-Salonen; Smolander; Haahtela

    2000-02-01

    We studied the potential of the humus layer of the Norway spruce stands to supply beneficial rhizobacteria to birch (Betula pendula), alder (Alnus incana) and fescue grass (Festuca rubra), representatives of pioneer vegetation after clear-cutting of the coniferous forest. Axenically grown seedlings of these species were inoculated with the acid spruce humus, pH 3.7-5.3. Actinorhizal propagules, capable of nodulating alder, were present in high density (10(3) g(-1)) in humus of long-term limed plots, whereas plots with nitrogen fertilization contained almost none (Alcaligenes and Comamonas. Enrichment cultures of the roots on nitrogen-free media yielded Paenibacillus and Rhodococcus species. Nitrogen-fixing R. erythropolis and a novel Paenibacillus, closest by full sequence of 16S rDNA to P. durus, represented new classes of nitrogen-fixing rhizosphere bacteria. In addition, nitrogen-fixing R. fascians was found in the humus. The rhizoflora and humus contained high proportions of bacteria antagonistic towards plant pathogenic Rhizoctonia sp., Botrytis cinerea and Fusarium culmorum. The antagonistic isolates also commonly produced siderophores and/or cell wall degrading enzymes. PMID:10640667

  13. Long-term Hg pollution-induced structural shifts of bacterial community in the terrestrial isopod (Porcellio scaber) gut

    Energy Technology Data Exchange (ETDEWEB)

    Lapanje, Ales, E-mail: ales@ifb.s [Institute of Physical Biology, Ljubljana (Slovenia); Zrimec, Alexis [Institute of Physical Biology, Ljubljana (Slovenia); Drobne, Damjana [Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana (Slovenia); Rupnik, Maja [Institute of Public Health Maribor, Maribor (Slovenia)

    2010-10-15

    In previous studies we detected lower species richness and lower Hg sensitivity of the bacteria present in egested guts of Porcellio scaber (Crustacea, Isopoda) from chronically Hg polluted than from unpolluted environment. Basis for such results were further investigated by sequencing of 16S rRNA genes of mercury-resistant (Hg{sup r}) isolates and clone libraries. We observed up to 385 times higher numbers of Hg{sup r} bacteria in guts of animals from polluted than from unpolluted environment. The majority of Hg{sup r} strains contained merA genes. Sequencing of 16S rRNA clones from egested guts of animals from Hg-polluted environments showed elevated number of bacteria from Pseudomonas, Listeria and Bacteroidetes relatives groups. In animals from pristine environment number of bacteria from Achromobacter relatives, Alcaligenes, Paracoccus, Ochrobactrum relatives, Rhizobium/Agrobacterium, Bacillus and Microbacterium groups were elevated. Such bacterial community shifts in guts of animals from Hg-polluted environment could significantly contribute to P. scaber Hg tolerance. - Chronic environmental mercury pollution induces bacterial community shifts and presence of elevated number as well as increased diversity of Hg-resistant bacteria in guts of isopods.

  14. Tyrosinase Inhibitory Effect and Antioxidative Activities of Fermented and Ethanol Extracts of Rhodiola rosea and Lonicera japonica

    Directory of Open Access Journals (Sweden)

    Yuh-Shuen Chen

    2013-01-01

    Full Text Available This is the first study to investigate the biological activities of fermented extracts of Rhodiola rosea L. (Crassulaceae and Lonicera japonica Thunb. (Caprifoliaceae. Alcaligenes piechaudii CC-ESB2 fermented and ethanol extracts of Rhodiola rosea and Lonicera japonica were prepared and the antioxidative activities of different concentrations of samples were evaluated using in vitro antioxidative assays. Tyrosinase inhibition was determined by using the dopachrome method with L-DOPA as substrate. The results demonstrated that inhibitory effects (ED50 values on mushroom tyrosinase of fermented Rhodiola rosea, fermented Lonicera japonica, ethanol extract of Lonicera japonica, and ethanol extract of Rhodiola rosea were 0.78, 4.07, 6.93, and >10 mg/ml, respectively. The DPPH scavenging effects of fermented Rhodiola rosea (ED50 = 0.073 mg/ml and fermented Lonicera japonica (ED50 = 0.207 mg/ml were stronger than effects of their respective ethanol extracts. Furthermore, the scavenging effect increases with the presence of high content of total phenol. However, the superoxide scavenging effects of fermented Rhodiola rosea was less than effects of fermented Lonicera japonica. The results indicated that fermentation of Rhodiola rosea and Lonicera japonica can be considered as an effective biochemical process for application in food, drug, and cosmetics.

  15. Biodegradation of Complex Bacteria on Phenolic Derivatives in River Water

    Institute of Scientific and Technical Information of China (English)

    GUANG-HUA LU; CHAO WANG; ZHE SUN

    2009-01-01

    Objective To isolate, incubate, and identify 4-chlorophenol-degrading complex bacteria, determine the tolerance of these bacteria to phenolic derivatives and study their synergetic metabolism as well as the aboriginal microbes and co-metabolic degradation of mixed chlorophenols in river water. Methods Microbial community of complex bacteria was identified by plate culture observation techniques and Gram stain method. Bacterial growth inhibition test was used to determine the tolerance of complex bacteria to toxicants. Biodegradability of phenolic derivatives was determined by adding 4-chlorophenol-degrading bacteria in river water. Results The complex bacteria were identified as Mycopiana, Alcaligenes, Pseudvmonas, and Flavobacterium. The domesticated complex bacteria were more tolerant to phenolic derivatives than the aboriginal bacteria from Qinhuai River. The biodegradability of chlorophenols, dihydroxybenzenes and nitrophenols under various aquatic conditions was determined and compared. The complex bacteria exhibited a higher metabolic efficiency on chemicals than the aboriginal microbes, and the final removal rate of phenolic derivatives was increased at least by 55% when the complex bacteria were added into river water. The metabolic relationship between dominant mixed bacteria and river bacteria was studied. Conclusion The complex bacteria domesticated by 4-chlorophenol can grow and be metabolized to take other chlorophenols, dihydroxybenzenes and nitrophenols as the sole carbon and energy source. There is a synergetic metabolism of most compounds between the aboriginal microbes in river water and the domesticated complex bacteria. 4-chlorophenol-degrading bacteria can co-metabolize various chlorophenols in river water.

  16. Biodegradability of Chlorinated Anilines in Waters

    Institute of Scientific and Technical Information of China (English)

    CHAO WANG; GUAN-GHUA LU; YAN-JIE ZHOU

    2007-01-01

    Objective To identify the bacteria tolerating chlorinated anilines and to study the biodegradability of o-chloroaniline and its coexistent compounds. Methods Microbial community of complex bacteria was identified by plate culture observation techniques and Gram stain method. Bacterial growth inhibition test was used to determine the tolerance of complex bacteria to toxicant. Biodegradability of chlorinated anilines was determined using domesticated complex bacteria as an inoculum by shaking-flask test. Results The complex bacteria were identified, consisting of Xanthomonas, Bacillus alcaligenes,Acinetobacter, Pseudomonas, and Actinomycetaceae nocardia. The obtained complex bacteria were more tolerant to o-chloroaniline than mixture bacteria in natural river waters. The effects of exposure concentration and inoculum size on the biodegradability of o-chloroaniline were analyzed, and the biodegradation characteristics of single o-chloroaniline and 2,4-dichloroaniline were compared with the coexistent compounds. Conclusion The biodegradation rates can be improved by decreasing concentration of compounds and increasing inoculum size of complex bacteria. When o-chloroaniline coexists with aniline, the latter is biodegraded prior to the former, and as a consequence the metabolic efficiency of o-chloroaniline is improved with the increase of aniline concentration. Meanwhile, when o-chloroaniline coexists with 2,4-dichloroaniline, the metabolic efficiency of 2,4-dichloroaniline is markedly improved.

  17. A reactor system combining reductive dechloirnation with cometabolic oxidation for complete degradation of tetrachloroentylene

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    A laboratory sequential anaerobic-aerobic bioreactor system,which consisted of an anaerobic fixed film reactor and twoaerobic chemostats, was set up to degrade tetrachloroethylene (PCE)without accumulating highly toxic degradation intermediates. A soil(ca. 150 mg/liter) of PCE stoichiometrically intocis-1,2-dichloroethylene (cis-DCE), was attached to ceramic mediain the anaerobic fixed film reactor. A phenol degrading strain,Alcaligenes sp. R5, which can efficiently degrade cis-DCE byco-metabolic oxidation, was used as inoculum for the aerobicchemostats consisted of a transformation reactor and a growthreactor. The anaerobic fixed film bioreactor showed more than 99 %of PCE transformation into cis-DCE in the range of influent PCE48h. On the other hand, efficient degradation of the resultantcis-DCE by strain R5 in the following aerobic system could not beachieved due to oxygen limitation. However, 54% of the maximum(H2O2) was supplemented to the transformation reactor as anadditional oxygen source. Further studies are needed to achievemore efficient co-metabolic degradation of cis-DCE in the aerobic reactor.

  18. Bacterial community in deep subseafloor sediments from the western Pacific "warm pool"

    Institute of Scientific and Technical Information of China (English)

    ZHAO Jing; ZENG RunYing

    2008-01-01

    The bacterial community in deep subseafloor sediments at a depth of 230 cm from the western Pacific "warm pool" is studied by construction of 16S rDNA clone library and PCR-RFLP (Restriction Fragment Length Polymorphism) analysis. The results indicate that the bacterial community in these sediments is mainly composed of five groups: α-Proteobacteria, β-Proteobacteria, CFB group (Cytophaga / Flexibacteria / Bacteroides), Acidobacteria and gram positive bacteria, with a few genera detected in each group. The most abundant bacteria group is α-Proteobacteria, and the next is β-Proteobacteria. The dominant species in α-and β-Proteobacteria are Sphingomonas paucimobilis and Pseudomonas alcaligenes respectively. The CFB group is simply composed of members belonging to Flavobacterium. The gram positive bacteria are rich, and mainly consists of the genus Geobacillus. The analysis of bacterial community indicates that organic matter is still abundant in the subseafloor sediments at the depth of 230 cm in the western Pacific "warm pool". These bacteria in this deep biosphere may play an important role in the nitrogen cycle of deep sea sediments at "warm pool".

  19. Decreasing ammonium generation using hydrogenotrophic bacteria in the process of nitrate reduction by nanoscale zero-valent iron

    Energy Technology Data Exchange (ETDEWEB)

    An, Yi; Li, Tielong [College of Environmental Science and Engineering/Tianjin Key Laboratory of Environmental Remediation and Pollution Control/Ministry of Education Key Laboratory of Pollution Processed and Environmental Criteria, Nankai University, Tianjin 300071 (China); Jin, Zhaohui, E-mail: jinzh@nankai.edu.cn [College of Environmental Science and Engineering/Tianjin Key Laboratory of Environmental Remediation and Pollution Control/Ministry of Education Key Laboratory of Pollution Processed and Environmental Criteria, Nankai University, Tianjin 300071 (China); Dong, Meiying; Li, Qianqian; Wang, Shuaima [College of Environmental Science and Engineering/Tianjin Key Laboratory of Environmental Remediation and Pollution Control/Ministry of Education Key Laboratory of Pollution Processed and Environmental Criteria, Nankai University, Tianjin 300071 (China)

    2009-10-15

    An integrated nitrate treatment using nanoscale zero-valent iron (NZVI) and Alcaligenes eutrophus, which is a kind of hydrogenotrophic denitrifying bacteria, was conducted to remove nitrate and decrease ammonium generation. Within 8 days, nitrate was removed completely in the reactors containing NZVI particles plus bacteria while the proportion of ammonium generated was only 33%. That is a lower reduction rate but a smaller proportion of ammonium relative to that in abiotic reactors. It was also found that ammonium generation experienced a biphasic process, involving an increasing period and a stable period. After domestication of the bacteria, the combined NZVI-cell system could remove all nitrate without ammonium released when the refreshed nitrate was introduced. Nitrate reduction and the final product distribution were also studied in batch reactors amended with different initial NZVI contents and biomass concentrations, respectively. Both the nitrate removal rate and the ammonium yield decreased when the initial content of NZVI reduced and the initial biomass concentration increased. However, about 27% of the nitrate was converted to ammonium when excess bacteria (OD{sub 422} = 0.026) were used, which was higher than that with appropriate amount of bacteria.

  20. Pyruvic Oxime Nitrification and Copper and Nickel Resistance by a Cupriavidus pauculus, an Active Heterotrophic Nitrifier-Denitrifier

    Directory of Open Access Journals (Sweden)

    Miguel Ramirez

    2014-01-01

    Full Text Available Heterotrophic nitrifiers synthesize nitrogenous gasses when nitrifying ammonium ion. A Cupriavidus pauculus, previously thought an Alcaligenes sp. and noted as an active heterotrophic nitrifier-denitrifier, was examined for its ability to produce nitrogen gas (N2 and nitrous oxide (N2O while heterotrophically nitrifying the organic substrate pyruvic oxime [CH3–C(NOH–COOH]. Neither N2 nor N2O were produced. Nucleotide and phylogenetic analyses indicated that the organism is a member of a genus (Cupriavidus known for its resistance to metals and its metabolism of xenobiotics. The microbe (a Cupriavidus pauculus designated as C. pauculus strain UM1 was examined for its ability to perform heterotrophic nitrification in the presence of Cu2+ and Ni2+ and to metabolize the xenobiotic phenol. The bacterium heterotrophically nitrified well when either 1 mM Cu2+ or 0.5 mM Ni2+ was present in either enriched or minimal medium. The organism also used phenol as a sole carbon source in either the presence or absence of 1 mM Cu2+ or 0.5 mM Ni2+. The ability of this isolate to perform a number of different metabolisms, its noteworthy resistance to copper and nickel, and its potential use as a bioremediation agent are discussed.

  1. Microbial degradation of high impact polystyrene (HIPS), an e-plastic with decabromodiphenyl oxide and antimony trioxide.

    Science.gov (United States)

    Sekhar, Vini C; Nampoothiri, K Madhavan; Mohan, Arya J; Nair, Nimisha R; Bhaskar, Thallada; Pandey, Ashok

    2016-11-15

    Accumulation of electronic waste has increased catastrophically and out of that various plastic resins constitute one of the leading thrown out materials in the electronic machinery. Enrichment medium, containing high impact polystyrene (HIPS) with decabromodiphenyl oxide and antimony trioxide as sole carbon source, was used to isolate microbial cultures. The viability of these cultures in the e-plastic containing mineral medium was further confirmed by triphenyl tetrazolium chloride (TTC) reduction test. Four cultures were identified by 16S rRNA sequencing as Enterobacter sp., Citrobacter sedlakii, Alcaligenes sp. and Brevundimonas diminuta. Biodegradation experiments were carried out in flask level and gelatin supplementation (0.1% w/v) along with HIPS had increased the degradation rate to a maximum of 12.4% (w/w) within 30days. This is the first report for this kind of material. The comparison of FTIR, NMR, and TGA analysis of original and degraded e-plastic films revealed structural changes under microbial treatment. Polystyrene degradation intermediates in the culture supernatant were also detected using HPLC analysis. The gravity of biodegradation was validated by morphological changes under scanning electron microscope. All isolates displayed depolymerase activity to substantiate enzymatic degradation of e-plastic.

  2. The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

    Directory of Open Access Journals (Sweden)

    Schneiker-Bekel Susanne

    2008-09-01

    Full Text Available Abstract Background Bordetella petrii is the only environmental species hitherto found among the otherwise host-restricted and pathogenic members of the genus Bordetella. Phylogenetically, it connects the pathogenic Bordetellae and environmental bacteria of the genera Achromobacter and Alcaligenes, which are opportunistic pathogens. B. petrii strains have been isolated from very different environmental niches, including river sediment, polluted soil, marine sponges and a grass root. Recently, clinical isolates associated with bone degenerative disease or cystic fibrosis have also been described. Results In this manuscript we present the results of the analysis of the completely annotated genome sequence of the B. petrii strain DSMZ12804. B. petrii has a mosaic genome of 5,287,950 bp harboring numerous mobile genetic elements, including seven large genomic islands. Four of them are highly related to the clc element of Pseudomonas knackmussii B13, which encodes genes involved in the degradation of aromatics. Though being an environmental isolate, the sequenced B. petrii strain also encodes proteins related to virulence factors of the pathogenic Bordetellae, including the filamentous hemagglutinin, which is a major colonization factor of B. pertussis, and the master virulence regulator BvgAS. However, it lacks all known toxins of the pathogenic Bordetellae. Conclusion The genomic analysis suggests that B. petrii represents an evolutionary link between free-living environmental bacteria and the host-restricted obligate pathogenic Bordetellae. Its remarkable metabolic versatility may enable B. petrii to thrive in very different ecological niches.

  3. Proteasas extracelulares producidas por bacterias marinas aisladas de aguas contaminadas con efluentes pesqueros

    Directory of Open Access Journals (Sweden)

    Tito Sánchez

    2013-06-01

    Full Text Available Un total de 26 cepas de bacterias marinas con actividad proteolítica fueron aisladas de agua de mar contaminadas con efluentes pesqueros; las mismas que se evaluaron en base al crecimiento y formación de halos de actividad en Agar Marino suplementados con caseína al 1%, pH 8,0 e incubados a 25 ºC por 72 h. Cinco cepas, seleccionadas por presentar los mejores halos de actividad fueron evaluadas a su vez por su crecimiento y producción de proteasas a diferentes concentraciones de NaCl, rangos de temperatura y pH; siendo consideradas finalmente como bacterias halotolerantes, psicrotróficas y alcalófilas moderadas. Estas cepas también fueron evaluadas por su actividad proteolítica específica sobre la caseína, siendo la cepa CM48 (Pseudomonas sp. la que presentó la mejor actividad específica (17,38 U/mg a las 72 horas, y seguidas por las cepas CM45 (Alcaligenes sp. (12,09 U/mg y tres cepas de Aeromonas sp. (CM43, CM44 y CM46 con valores de 12,02; 10,07 y 10,10 U/mg respectivamente.

  4. Hydrogen bonding of the dissociated histidine ligand is not required for formation of a proximal NO adduct in cytochrome c'.

    Science.gov (United States)

    Ghafoor, Dlzar D; Kekilli, Demet; Abdullah, Gaylany H; Dworkowski, Florian S N; Hassan, Hamid G; Wilson, Michael T; Strange, Richard W; Hough, Michael A

    2015-09-01

    Cytochromes c', that occur in methanotrophic, denitrifying and photosynthetic bacteria, form unusual proximal penta-coordinate NO complexes via a hexa-coordinate distal NO intermediate. Their NO binding properties are similar to those of the eukaryotic NO sensor, soluble guanylate cyclase, for which they provide a valuable structural model. Previous studies suggested that hydrogen bonding between the displaced proximal histidine (His120) ligand (following its dissociation from heme due to trans effects from the distally bound NO) and a conserved aspartate residue (Asp121) could play a key role in allowing proximal NO binding to occur. We have characterized three variants of Alcaligenes xylosoxidans cytochrome c' (AXCP) where Asp121 has been replaced by Ala, Ile and Gln, respectively. In all variants, hydrogen bonding between residue 121 and His120 is abolished yet 5-coordinate proximal NO species are still formed. Our data therefore demonstrate that the His120-Asp121 bond is not essential for proximal NO binding although it likely provides an energy minimum for the displaced His ligand. All variants have altered proximal pocket structure relative to native AXCP. PMID:26100643

  5. Comparison of aerobic denitrifying activity among three cultural species with various carbon sources.

    Science.gov (United States)

    Otani, Y; Hasegawa, K; Hanaki, K

    2004-01-01

    Abilities of three aerobic denitrifiers such as Alcaligenes faecalis, Microvirgula aerodenitrificans and Paracoccus pantotrophus were compared from the viewpoints of nitrate removal efficiency and organic matter utilization. First, the effect of carbon source was investigated. Although nitrate reduction was observed in all strains under aerobic conditions, a change of carbon source considerably affected the denitrification ability. In the case of P. pantotrophus, nitrate and nitrite were completely removed in three days under sodium acetate or leucine as a carbon source. In the case of A. faecalis, sufficient nitrate removal was observed only when sodium acetate or ethanol was added. P. pantotrophus and A. faecalis showed a higher ability of nitrate removal than that of M. aerodenitrificans. Therefore, P. pantotrophus was selected in order to investigate the effects of concentration and repetitive addition of carbon. Sodium acetate was used as a sole carbon source. Nitrate was not reduced when the carbon concentration was below 500 mgC/L. However, when carbon source was added repeatedly, nitrate was reduced under 100 mgC/L after the optical density of the bacterium reached above 1.0. This result indicated that a high enough level of bacterial density was necessary to express aerobic denitrification activity. PMID:15566182

  6. Characterization of bacterial communities associated with Brassica napus L. growing on a Zn-contaminated soil and their effects on root growth.

    Science.gov (United States)

    Montalbán, Blanca; Croes, Sarah; Weyens, Nele; Lobo, M Carmen; Pérez-Sanz, Araceli; Vangronsveld, Jaco

    2016-10-01

    The interaction between plant growth-promoting bacteria (PGPB) and plants can enhance biomass production and metal tolerance of the host plants. This work aimed at isolating and characterizing the cultivable bacterial community associated with Brassica napus growing on a Zn-contaminated site, for selecting cultivable PGPB that might enhance biomass production and metal tolerance of energy crops. The effects of some of these bacterial strains on root growth of B. napus exposed to increasing Zn and Cd concentrations were assessed. A total of 426 morphologically different bacterial strains were isolated from the soil, the rhizosphere, and the roots and stems of B. napus. The diversity of the isolated bacterial populations was similar in rhizosphere and roots, but lower in soil and stem compartments. Burkoholderia, Alcaligenes, Agrococcus, Polaromonas, Stenotrophomonas, Serratia, Microbacterium, and Caulobacter were found as root endophytes exclusively. The inoculation of seeds with Pseudomonas sp. strains 228 and 256, and Serratia sp. strain 246 facilitated the root development of B. napus at 1,000 µM Zn. Arthrobacter sp. strain 222, Serratia sp. strain 246, and Pseudomonas sp. 228 and 262 increased the root length at 300 µM Cd. PMID:27159736

  7. Bacterial community in deep subseafloor sediments from the western Pacific "warm pool"

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The bacterial community in deep subseafloor sediments at a depth of 230 cm from the western Pacific "warm pool" is studied by construction of 16S rDNA clone library and PCR-RFLP (Restriction Fragment Length Polymorphism) analysis. The results indicate that the bacterial community in these sediments is mainly composed of five groups: α-Proteobacteria, β-Proteobacteria, CFB group (Cytophaga / Flexi-bacteria / Bacteroides), Acidobacteria and gram positive bacteria, with a few genera detected in each group. The most abundant bacteria group is α-Proteobacteria, and the next is β-Proteobacteria. The dominant species in α-and β-Proteobacteria are Sphingomonas paucimobilis and Pseudomonas alca-ligenes respectively. The CFB group is simply composed of members belonging to Flavobacterium. The gram positive bacteria are rich, and mainly consists of the genus Geobacillus. The analysis of bacterial community indicates that organic matter is still abundant in the subseafloor sediments at the depth of 230 cm in the western Pacific "warm pool" . These bacteria in this deep biosphere may play an impor-tant role in the nitrogen cycle of deep sea sediments at "warm pool" .

  8. Sapindus saponins' impact on hydrocarbon biodegradation by bacteria strains after short- and long-term contact with pollutant.

    Science.gov (United States)

    Smułek, Wojciech; Zdarta, Agata; Łuczak, Marta; Krawczyk, Piotr; Jesionowski, Teofil; Kaczorek, Ewa

    2016-06-01

    The introduction of high toxicity petroleum contaminants to the natural environment causes damage to ecosystems and the aesthetics of the surroundings. Therefore it is critical to enhance microbial community performance to manage the degradation process. This paper analyses the effect of natural surfactants from the tree Sapindus mukorossi on biodegradation of hydrocarbons. Analysis of cell surface hydrophobicity and zeta potential confirmed effective modifications of the cell surface parameters essential for the bioavailability of contaminants to microorganisms. Interestingly, favorable differences were observed only for microorganisms from non-contaminated soil. There was also recorded an increase in diesel oil biodegradation to 41% for Sphingomonas sp. and 56% for Pseudomonas alcaligenes on addition of 100mgL(-1) of Sapindus saponins. The addition of natural surfactants has no significant impact on bacterial strains isolated from long-term contaminated soil. This research demonstrates that the addition of Sapindus extract could be a useful tool to improve the effectiveness of microbial degradation of hydrocarbon pollutants by environmental strains in recently contaminated. PMID:26954087

  9. Multi-antibiotic resistant bacteria in frozen food (ready to cook food) of animal origin sold in Dhaka, Bangladesh

    Institute of Scientific and Technical Information of China (English)

    Fouzia Sultana; Kamrunnahar; Hafsa Afroz; Afroz Jahan; Md Fakruddin; Suvamoy Datta

    2014-01-01

    Objective: To investigate the bacterial load and antibiotic resistance pattern of bacterial isolates obtained from (ready to cook) frozen food samples of animal origin in Dhaka, Bangladesh. Methods: A total of 20 samples of frozen ready to cook food of animal origin were purchased from different separate grocery stores in Dhaka, Bangladesh. Bacteria were isolated and identified based on the basis of biochemical properties. Results: A total of 57 isolates has been isolated from 20 samples, of them 35.08% were Gram positive and 64.92% were Gram negative organisms. Highest percentages of isolated organisms were Staphylococcocus spp. (24.56%), Alcaligene spp. (17.54%), Klebshiella spp. (12.28%) and the lowest percentages of organisms were Enterococcus spp., Actinobacillus spp. and Proteus spp. Antibiogram results clearly showed that levofloxacin and imipenem were the most effective drug against the isolates. The less effective antibiotics were chloramphenicol and nalidixic acid and resistance was highest against ciprofloxacin. The most contaminated food was chicken nuggets. Conclusions: This type of frozen food contaminated with multi-antibiotic resistant microorganisms can be potential vehicles for transmitting food-borne diseases.

  10. Biotransformation of arsenite and bacterial aox activity in drinking water produced from surface water of floating houses: Arsenic contamination in Cambodia.

    Science.gov (United States)

    Chang, Jin-Soo

    2015-11-01

    The potential arsenite bioteansformation activity of arsenic was investigated by examining bacterial arsenic arsenite-oxidizing gene such as aoxS, aoxR, aoxA, aoxB, aoxC, and aoxD in high arsenic-contaminated drinking water produced from the surface water of floating houses. There is a biogeochemical cycle of activity involving arsenite oxidase aox system and the ars (arsenic resistance system) gene operon and aoxR leader gene activity in Alcaligenes faecalis SRR-11 and aoxS leader gene activity in Achromobacter xylosoxidans TSL-66. Batch experiments showed that SRR-11 and TSL-66 completely oxidized 1 mM of As (III) to As (V) within 35-40 h. The leaders of aoxS and aoxR are important for gene activity, and their effects in arsenic bioremediation and mobility in natural water has a significant ecological role because it allows arsenite oxidase in bacteria to control the biogeochemical cycle of arsenic-contaminated drinking water produced from surface water of floating houses.

  11. [Physicochemical and microbiological factors influencing the bioavailability of organic contaminants in subsoils]. Progress report, [July 1, 1992--June 30, 1993

    Energy Technology Data Exchange (ETDEWEB)

    1992-12-31

    We report progress in elucidating the microbiological variables important in determining the relative success of bacteria in utilizing soil-sorbed contaminants. Two bacterial species, Pseudomonas putida (ATCC 17484) and an Alcaligenes sp. isolated from petroleum contaminated soil are known to differ markedly in their ability to utilize soil-sorbed napthalene based on a kinetic comparison of their capability of naphthalene mineralization in soil-containing and soil-free systems. The kinetic analysis led us to conclude that strain 17484 had direct access to naphthalene present in a labile sorbed state which promoted the rapid desorption of naphthalene from the non-labile phase. Conversely, both the rate and extent of naphthalene mineralization by strain NP-Alk suggested that this organism had access only to naphthalene in solution. Desorption was thus limited and the efficiency of total naphthalene removal from these soil slurries was poor. These conclusions were based on the average activities of cells in soil slurries without regard for the disposition of the organisms with respect to the sorbent. Since both organisms degrade naphthalene by apparently identical biochemical pathways, have similar enzyme kinetic properties, and are both motile, gram negative organisms, we undertook a series of investigations to gain a better understanding of what microbiological properties were important in bioavailability.

  12. [Physicochemical and microbiological factors influencing the bioavailability of organic contaminants in subsoils

    Energy Technology Data Exchange (ETDEWEB)

    1992-12-31

    We report progress in elucidating the microbiological variables important in determining the relative success of bacteria in utilizing soil-sorbed contaminants. Two bacterial species, Pseudomonas putida (ATCC 17484) and an Alcaligenes sp. isolated from petroleum contaminated soil are known to differ markedly in their ability to utilize soil-sorbed napthalene based on a kinetic comparison of their capability of naphthalene mineralization in soil-containing and soil-free systems. The kinetic analysis led us to conclude that strain 17484 had direct access to naphthalene present in a labile sorbed state which promoted the rapid desorption of naphthalene from the non-labile phase. Conversely, both the rate and extent of naphthalene mineralization by strain NP-Alk suggested that this organism had access only to naphthalene in solution. Desorption was thus limited and the efficiency of total naphthalene removal from these soil slurries was poor. These conclusions were based on the average activities of cells in soil slurries without regard for the disposition of the organisms with respect to the sorbent. Since both organisms degrade naphthalene by apparently identical biochemical pathways, have similar enzyme kinetic properties, and are both motile, gram negative organisms, we undertook a series of investigations to gain a better understanding of what microbiological properties were important in bioavailability.

  13. Pathogens associated with bovine mastitis in dairy herds in the south region of Brazil

    Directory of Open Access Journals (Sweden)

    Marta Bañolas Jobim

    2010-02-01

    Full Text Available In this work, through microbiological examinations, the etiology of bovine mastitis in 628 milk samples coming from dairy farms from Paraná, Santa Catarina and Rio Grande do Sul along the year of 2007 were evaluated. Out of this total 1,382 microorganisms were isolated. By taking into account the total of isolations, the following microorganisms and their percentage, respectively were found: Staphylococcus spp. (30.53%, Escherichia coli (21.64%, Streptococcus bovis (17.08%, Streptococcus agalactiae (11.07%, Enterobacter spp. (7.53%, Pseudomonas spp. (4.12% and others (8.03%. The microorganisms grouped into the others are: Streptococcus spp., Proteus spp., gram negative rods, Shigella spp., Alcaligenes spp., Klebsiella spp., Edwarsiella spp., Citrobacter spp., Serratia spp., Salmonella spp. e Corynebacterium spp. The environmental pathogens predominated among the isolated microorganisms; 33.13% of the cultures presented more than three pathogens, suggesting contamination of the samples; in the mounts of November and December, there was an increase of the samples sent.

  14. Gas phase bio-filter for the removal of triethylamine (TEA) from air: microbial diversity analysis with reference to design parameters.

    Science.gov (United States)

    Gandu, Bharath; Sandhya, K; Gangagni Rao, A; Swamy, Y V

    2013-07-01

    Biotic (packed bio-filter; PBF) and abiotic (packed filter; PF) studies were carried out on two similar 2L gas phase filters for the removal of triethylamine (TEA) at inlet concentration in the range of 250-280 ppmV. Removal efficiency (RE) of PBF remained in the range of 90-99% during the stable period of operation (170 days) whereas RE of PF dropped gradually to 10% in a span of 90 days. Five different bacterial species viz; Aeromonas sp., Alcaligenes sp., Arthrobacter sp., Klebsiella sp., and Pseudomonas sp., were identified in PBF. It was observed that diethyl amine, ethylamine and nitrate were formed as metabolites during the degradation pathway. Empty bed residence time of 20s, mass loading rate of 202.26 g/m(3)/h, space velocity of 178.82 m(3)/m(3)/h and elimination capacity of 201.52 g/m(3)/h were found to be optimum design parameters for PBF to get RE in the range of 90-99%.

  15. 中华鳖几种常见疾病病原的分离鉴定及药敏试验%Isolation,Identification and Drug Sensitivity of the Pathogens of Common Bac teritic Disease in Soft-shelled Turtle(Trionyx sinensis)

    Institute of Scientific and Technical Information of China (English)

    孙红祥; 舒妙安

    2002-01-01

    从患"穿孔病"、"腐皮病"、"溶血性腹水病"等濒死鳖的肝、心血和腹水中分离到20株细菌,其中温和气单胞菌(Aeromonas sobria)5株、豚鼠气单胞菌(A.caviae)3株、凡隆气单胞菌(A.veronii)2株、奇异变形杆菌(Proteus mirabilis)2株、产碱假单胞菌(Pseudomonas alcaligene)2株、无色杆菌(Achro sp.)3株、不动杆菌(Acinetobactersp.)2株、黄杆菌(Flavobacterium sp.)1株.人工感染试验证实,运动型气单胞菌的温和气单胞菌和豚鼠气单胞菌是其主要病原菌.药敏试验结果表明,分离菌株对新霉素、菌必治、丁胺卡那、庆大霉素、环丙沙星高度敏感.

  16. Remediation of oil-based drill cuttings through a biosurfactant-based washing followed by a biodegradation treatment.

    Science.gov (United States)

    Yan, Ping; Lu, Mang; Guan, Yueming; Zhang, Weimu; Zhang, Zhongzhi

    2011-11-01

    In this study, oil-based drill cuttings were washed by a rhamnolipid solution and then subjected to bioremediation in stainless steel boxes using sawdust as bulking agent. A mixed bacterial culture, mainly containing Pseudomonas, Acinetobacter, Alcaligenes, Agrobacterium, and Comamonas, was used as inoculums. Approximately 83% of organics were removed after washing under optimal conditions (liquid/solid ratio, 3:1; washing time, 20 min; stirring speed, 200 rpm; rhamnolipid concentration, 360 mg/L; temperature, 60 °C), and the total petroleum hydrocarbon concentration of the cuttings dropped from 85,000 to 12,600 mg/kg. In the bioremediation stage, concentrations of saturated and aromatic hydrocarbons decreased to 2140 and 1290 mg/kg, respectively, after 120 days. Ultrahigh-resolution mass spectrometry demonstrated that oxygen- and nitrogen-containing compounds had undergone biodegradation. The results of this study indicate that this two-stage remedial system can reduce treatment time and increase treatment efficiency as compared with a single bioremediation or washing treatment.

  17. Polyphasic bacterial community analysis of an aerobic activated sludge removing phenols and thiocyanate from coke plant effluent

    Energy Technology Data Exchange (ETDEWEB)

    Felfoldi, T.; Szekely, A.J.; Goral, R.; Barkacs, K.; Scheirich, G.; Andras, J.; Racz, A.; Marialigeti, K. [Eotvos Lorand University, Budapest (Hungary). Dept. of Microbiology

    2010-05-15

    Biological purification processes are effective tools in the treatment of hazardous wastes such as toxic compounds produced in coal coking. In this study, the microbial community of a lab-scale activated sludge system treating coking effluent was assessed by cultivation-based (strain isolation and identification, biodegradation tests) and culture-independent techniques (sequence-aided T-RFLP, taxon-specific PCR). The results of the applied polyphasic approach showed a simple microbial community dominated by easily culturable heterotrophic bacteria. Comamonas badia was identified as the key microbe of the system, since it was the predominant member of the bacterial community, and its phenol degradation capacity was also proved. Metabolism of phenol, even at elevated concentrations (up to 1500 mg/L), was also presented for many other dominant (Pseudomonas, Rhodanobacter, Oligella) and minor (Alcaligenes, Castellaniella, Microbacterium) groups, while some activated sludge bacteria (Sphingomonas, Rhodopseudomonas) did not tolerate it even in lower concentrations (250 mg/L). In some cases, closely related strains showed different tolerance and degradation properties. Members of the genus Thiobacillus were detected in the activated sludge, and were supposedly responsible for the intensive thiocyanate biodegradation observed in the system. Additionally, some identified bacteria (e.g. C. badia and the Ottowia-related strains) might also have had a significant impact on the structure of the activated sludge due to their floc-forming abilities.

  18. Biodegradation of phenanthrene in bioaugmented microcosm by consortium ASP developed from coastal sediment of Alang-Sosiya ship breaking yard.

    Science.gov (United States)

    Patel, Vilas; Patel, Janki; Madamwar, Datta

    2013-09-15

    A phenanthrene-degrading bacterial consortium (ASP) was developed using sediment from the Alang-Sosiya shipbreaking yard at Gujarat, India. 16S rRNA gene-based molecular analyses revealed that the bacterial consortium consisted of six bacterial strains: Bacillus sp. ASP1, Pseudomonas sp. ASP2, Stenotrophomonas maltophilia strain ASP3, Staphylococcus sp. ASP4, Geobacillus sp. ASP5 and Alcaligenes sp. ASP6. The consortium was able to degrade 300 ppm of phenanthrene and 1000 ppm of naphthalene within 120 h and 48 h, respectively. Tween 80 showed a positive effect on phenanthrene degradation. The consortium was able to consume maximum phenanthrene at the rate of 46 mg/h/l and degrade phenanthrene in the presence of other petroleum hydrocarbons. A microcosm study was conducted to test the consortium's bioremediation potential. Phenanthrene degradation increased from 61% to 94% in sediment bioaugmented with the consortium. Simultaneously, bacterial counts and dehydrogenase activities also increased in the bioaugmented sediment. These results suggest that microbial consortium bioaugmentation may be a promising technology for bioremediation.

  19. IDENTIFICATION AND BIOLOGICAL ACTIVITY OF POTENTIAL PROBIOTIC BACTERIA ISOLATED FROM POECILIA RETICULATA (GUPPY

    Directory of Open Access Journals (Sweden)

    Aparna Balakrishna

    2014-08-01

    Full Text Available Antagonistic activities against candidate indicator strains, adhesion to mucus and biofilm formation of potential probiotic strains isolated from Poecilia reticulata were evaluated. Four isolated strains (MBTU_PB1, MBTU_PB2, MBTU_PB3 and MBTU_PB4 showed moderate to strong antagonistic activities against the tested five indicator strains (Aeromonas hydrophila1739, Vibrio cholera 3906, Flavobacterium 2495, Acinetobacter 1271 and Alcaligenes 1424 and these isolates were further identified using biochemical tests and 16S rDNA gene sequence analysis. Except the whole cell product, the other three cellular components, namely, heat-killed whole cell product, intracellular product and extracellular product of all the four selected isolates were equally effective, as revealed by the zone of inhibitions to the tested indicator strains. The in vitro adhesion property or the ability of colonization is often considered as a selection criteria for probiotics. All the selected four strains had higher adhesion abilities than the indicator strains. Further, these four strains had the ability to form biofilms on polystyrene surfaces. The in vitro characterization of these four strains suggests possibility of using the isolates, as individual strain or in combination, for probiotic therapy in aquaculture.

  20. Immobilization of cells for use as biocatalysts

    Energy Technology Data Exchange (ETDEWEB)

    Vojtisek, V.; Jirku, V.; Krumphanzl, V.; Culik, K.

    1983-07-21

    Bacterial cells and cells of higher organisms are immobilized on polymers, either as whole cells, cell fragments, or subcellular components. This immobilization is used for stabilization of their various enzymic activities, which are of commercial interest, e.g. for the enzymes themselves, for alkaloid production, for hormone transformations, or for various fermentations. Thus, Sedipur CL-930 was polymerized in the presence of glutaraldehyde and the polymer was incubated with Alcaligenes metalcaligenes cells for immobilization. The nonimmobilized cells contained an aspartate ammonia-lyase activity of 550 mumol L-aspartate converted/min/g, and the immobilized cells contained an activity of 420 or 500 mumol aspartate/min/g when the polymer used was made with 2 different ratios of Sedipur to glutaraldehyde. The immobilized cell product had the form of defined platelets (lamellae) with a diameter of 100-600 mum, depending on the Sedipur/glutaraldehyde ratio. In other procedures, cells were permeabilized with tensides and/or organic solvents after the immobilization. Other cells immobilized included yeast, fungi, and plant cells. The activities which were examined included glycolytic enzymes, penicillin acylase, L-asparagine amidohydrolase and production of alkaloids and phytosterols from Solanum aviculare.

  1. Zinc-substituted pseudoazurin solved by S/Zn-SAD phasing.

    Science.gov (United States)

    Gessmann, Renate; Papadovasilaki, Maria; Drougkas, Evangelos; Petratos, Kyriacos

    2015-01-01

    The copper(II) centre of the blue copper protein pseudoazurin from Alcaligenes faecalis has been substituted by zinc(II) via denaturing the protein, chelation and removal of copper and refolding the apoprotein, followed by the addition of an aqueous solution of ZnCl2. Vapour-diffusion experiments produced colourless hexagonal crystals (space group P65), which when cryocooled had unit-cell parameters a=b=49.01, c=98.08 Å. Diffraction data collected at 100 K using a copper sealed tube were phased by the weak anomalous signal of five S atoms and one Zn atom. The structure was fitted manually and refined to 1.6 Å resolution. The zinc-substituted protein exhibits similar overall geometry to the native structure with copper. Zn2+ binds more strongly to its four ligand atoms (His40 Nδ1, Cys78 Sγ, His81 Nδ1 and Met86 Sδ) and retains the tetrahedral arrangement, although the structure is less distorted than the native copper protein.

  2. Bioavailability of zinc in runoff water from roofing materials.

    Science.gov (United States)

    Heijerick, D G; Janssen, C R; Karlèn, C; Wallinder, I Odnevall; Leygraf, C

    2002-06-01

    Corrosion and runoff from zinc-coated materials and outdoor structures is an important source for the dispersion of zinc in the environment. Being part of a large inter-disciplinary research project, this study presents the bioavailability of zinc in runoff water immediately after release from the surface of 15 different commercially available zinc-based materials exposed to the urban environment of Stockholm, Sweden. Runoff water was analysed chemically and evaluated for its possible environmental impact, using both a biosensor test with the bacteria Alcaligenes eutrophus (Biomet) and the conventional 72 h growth inhibition test with the green alga Raphidocelis subcapitata. Chemical speciation modelling revealed that most zinc (94.3-99.9%) was present as the free Zn ion, the most bioavailable speciation form. These findings were confirmed by the results of the biosensor test (Biomet) which indicated that all zinc was indeed bioavailable. Analysis of the ecotoxicity data also suggested that the observed toxic effects were due to the presence of Zn2+ ions. Finally, regression analysis showed that, for this type of runoff samples, the rapid screening biosensor was capable of predicting (a) the total amount of zinc present in the runoff samples (R2 of 0.93-0.98; p < 0.05) and (b) the observed 72 h-EbC50s (R2 of 0.69-0.97; p < 0.05). PMID:12137040

  3. Impact of fertilizer plant effluent on water quality

    International Nuclear Information System (INIS)

    The impact of National Fertilizer Company of Nigeria out fall effluent on the physico chemistry and bacteriology of Okrika creek was investigated during the sampling period from May to December, 1998. The National Fertilizer Company of Nigeria out fall effluent, the Okrika creek water and the lkpukulubie creek (control) water samples were collected. The physico-chemical parameters analyzed for all the samples included temperature, p H, total chloride, total dissolved solids, dissolved oxygen, conductivity, free ammonia, total phosphate, urea, zinc and iron, while the bacteriological determinations were total culturable aerobic heterotrophic bacteria count and identification of representative isolates. The Okrika creek recorded higher concentrations for all the physicochemical parameters and bacteria load than the control creek. The higher values of p H, Free NH3, urea, TDS and the conductivity of the National Fertilizer Company of Nigeria out fall effluent above the FEPA standards reflect the poor effluent quality generated by National Fertilizer Company of Nigeria. The bacteria species isolated from the samples include Aerococcus viridans, Alcaligenes faecalis, Bacillus cereus, Citrobacter freundii, Escherichia coli, Klebsiella pneumoniae, Proteus vulgaris, Pseudomonas aeruginosa, Serratia marcescens and Staphylococcus aureus. In general, the investigation revealed that there was an extremely adverse impact on the physico-chemical and bacteriological water quality characteristics of the Okrika creek as a result of the discharge of poor quality effluent from National Fertilizer Company of Nigeria operations

  4. Isolation, molecular and biochemical characterization of oil degrading bacteria from contaminated soil at an oil refinery

    International Nuclear Information System (INIS)

    Biodegradation using microorganisms is considered to be cost-effective and environmentally friendly treatment of oil-contaminated sites. Oil-biodegrading bacterial strains were isolated, identified and characterized from oil contaminated soil samples at oil refinery in Zarqa (Jordan). Thirty four bacterial isolates were grown on mineral salt media supplemented with crude oil, but 16 showed positive biodegradation of diesel. All the 34 bacterial isolates were characterized at the molecular and bio-chemical levels, and showed positive polymerase chain reaction (PCR) amplification product size of 1500 bp when 16s rDNA bacterial universal primers were used. Eighteen bacterial isolates showed positive PCR amplification product size of 150 bp specific for the genus Pseudomonas and 3 bacterial isolates showed positive amplification product size of 1500 bp specific for the genus Acinetobacter. Biochemical and physiological characterization performed on the 34 bacterial isolates revealed the presence of oil biodegrading bacterial genera and species of Pseudomonas Acidovorans, P. aeruginosa, P. vesicularis, Acinetobacter calcoaceticus, Ac. lowffii, Micro-ococcus luteus, M. varians, M. lylae, M. roseus, Alcaligenes denitrificians, Bacillus megaterium, Comamonas sp., Moralxella sp., Bordetella sp., P. putida, P. stutzeri and P. mallei. (au)

  5. ε-Caprolactam Utilization by Proteus sp. and Bordetella sp. Isolated From Solid Waste Dumpsites in Lagos State, Nigeria, First Report.

    Science.gov (United States)

    Sanuth, Hassan Adeyemi; Yadav, Amit; Fagade, Obasola Ezekiel; Shouche, Yogesh

    2013-06-01

    The ε-caprolactam is the monomer of the synthetic non-degradable nylon-6 and often found as nonreactive component of nylon-6 manufacturing waste effluent. Environmental consequences of its toxicity to natural habitats and humans pose a global public concern. Soil samples were collected from three designated solid waste dumpsites, namely, Abule-Egba, Olusosun and Isheri-Igando in Lagos State, Nigeria. Sixteen bacteria isolated from these samples were found to utilize the ε-caprolactam as a sole source of carbon and nitrogen at concentration of ≤20 g l(-1). The isolates were characterized using their 16S rRNA gene sequence and showed similarity with Pseudomonas sp., Proteus sp., Providencia sp., Corynebacterium sp., Lysinibacillus sp., Leucobacter sp., Alcaligenes sp. and Bordetella sp. Their optimal growth conditions were found to be at temperature range of 30 to 35 °C and pH range of 7.0-7.5. High Performance liquid chromatography analysis of the ε-caprolactam from supernatant of growth medium revealed that these isolates have potential to remove 31.6-95.7 % of ε-caprolactam. To the best of our knowledge, this study is first to report the ability of Proteus sp. and Bordetella sp. for ε-caprolactam utilization. PMID:24426112

  6. Application of Bacteria Cellulose in Food Industry%细菌纤维素在食品工业中的应用

    Institute of Scientific and Technical Information of China (English)

    马霞; 王瑞明; 贾士儒; 关凤梅

    2002-01-01

    @@ 细菌纤维素(Bacterical cellulose,BC)是当今国内外生物材料研究的热点之一.一般认为合成纤维素是植物特有的功能,但是,有少数微生物也能合成纤维素.现已知道,在各种不同条件下能合成纤维素的微生物有醋酸菌属(Acetobacter)、土壤杆菌属(Agrobacterium)、假单胞杆菌属(Pseudomonas)、无色杆菌属(Achrombacter)、产碱杆菌属(Alcaligenes)、气杆菌属(Aerobacter)、固氮菌属(Azotobacter)、根瘤菌属(Rhizabium)和八叠球菌属(Sarcina)等的某些种,它们合成的纤维素统称为细菌纤维素.其中真正能够批量地工业化生产细菌纤维素且合成能力最强的是醋酸菌属(Acetobacter)中的木醋杆菌(Acetobacterxylnium).

  7. Polymicrobial Infection of the Cornea Due to Contact Lens Wear

    Directory of Open Access Journals (Sweden)

    Selçuk Sızmaz

    2016-04-01

    Full Text Available A 38-year-old male presented with pain and redness in his left eye. He had a history of wearing contact lenses. His ophthalmic examination revealed a large corneal ulcer with surrounding infiltrate. Cultures were isolated from the contact lenses, lens solutions, storage cases, and conjunctivae of both eyes and also corneal scrapings of the left eye. Fortified vancomycin and amikacin drops were started hourly. Culture results of conjunctivae of each eye and left cornea were positive for Pseudomonas aeruginosa; cultures from the contact lenses, lens solution and storage case of both eyes revealed Pseudomonas aeruginosa and Alcaligenes xylosoxidans. Polymerase chain reaction of the corneal scraping was positive for Acanthameoba. The topical antibiotics were changed with ones that both bacteria were sensitive to and anti-amoebic therapy was added. The patient had two recurrences following initial presentation despite intensive therapy. Keratitis occurred due to multiple pathogens; the relapsing course despite adequate therapy is potentially associated with this polymicrobial etiology.

  8. Nitrogen fixation genetics and regulation in a Pseudomonas stutzeri strain associated with rice.

    Science.gov (United States)

    Desnoues, Nicole; Lin, Min; Guo, Xianwu; Ma, Luyan; Carreño-Lopez, Ricardo; Elmerich, Claudine

    2003-08-01

    The Pseudomonas stutzeri strain A1501 (formerly known as Alcaligenes faecalis) fixes nitrogen under microaerobic conditions in the free-living state and colonizes rice endophytically. The authors characterized a region in strain A1501, corresponding to most of the nif genes and the rnf genes, involved in electron transport to nitrogenase in Rhodobacter capsulatus. The region contained three groups of genes arranged in the same order as in Azotobacter vinelandii: (1) nifB fdx ORF3 nifQ ORF5 ORF6; (2) nifLA-rnfABCDGEF-nifY2/nafY; (3) ORF13 ORF12-nifHDK-nifTY ORF1 ORF2-nifEN. Unlike in A. vinelandii, where these genes are not contiguous on the chromosome, but broken into two regions of the genome, the genes characterized here in P. stutzeri are contiguous and present on a 30 kb region in the genome of this organism. Insertion mutagenesis confirmed that most of the nif and the rnf genes in A1501 were essential for nitrogen fixation. Using lacZ fusions it was found that nif and rnf gene expression was under the control of ntrBC, nifLA and rpoN and that the rnf gene products were involved in the regulation of the nitrogen fixation process. PMID:12904565

  9. SHORT COMMUNICATION: Non-Fermenters in Human Infections with Special Reference to Acinetobacter Species in a Tertiary Care Hospital from North Karnataka, India

    Directory of Open Access Journals (Sweden)

    Prashant K. Parandekar

    2012-01-01

    Full Text Available Background: Non-fermenters are a group of aerobic non-spore forming gram negative bacilli that are either incapable of utilizingcarbohydrates as a source of energy or degrade them via oxidative rather than fermentative pathway. These are increasingly been reported from the cases of nosocomial infections. Aims and Objectives: This study was undertaken aiming to identify, characterize all nonfermenters and further study of Acinetobacterisolates. Materials and Methods: A total 116 non-fermenters isolated from various specimens obtained from the patients in tertiarycare hospital. Gram negative bacilli which failed to produce acid on Triple Sugar Iron Agar (TSI were identified by employing battery oftests. The Acinetobacter isolates were further speciated and antimicrobial susceptibility testing done by Kirby Bauer disc diffusion technique. Results: Non-fermenters isolated were Pseudomonas aerugionsa (69.8%, Acinetobacter species (18.9%,Stenotrophomonas maltophilia (4.3%, Burkholderia cepacia (3.4%, Alcaligenes fecalis (1.7% and Pseudomonas fluorescens (1.7%. Most of the isolates showed susceptibility to imipenem (86.3% whereasnone of the isolates were sensitive to cephalexin and co-trimoxazole. Conclusion: This study highlights that, after Pseudomonas aeruginosa, Acinetobacter species is the most common non-fermenter. Majority of the isolates of Acinetobacter Species were ofnosocomial origin and were multidrug resistant, which underlines the importance of proper vigilance of these infections in hospital setting.

  10. ANTIBACTERIAL ACTIVITY AND PHYTOCHEMICAL SCREENING OF LEAVES AND STEM EXTRACTS OF AVICENNIA ALBA BLUME

    Directory of Open Access Journals (Sweden)

    Nagababu, P

    2012-12-01

    Full Text Available The present work was attempted to study the Antibacterial activity and phytochemical analysis of Mangrove plant Avicennia alba. Leaf and stem extracts of A. alba were prepared in Hexane, Benzene, Chloroform, Ethyl acetate, Acetone and Methanol solvents. The resulted extracts of the plant were screened for antibacterial activity against Micrococcus luteus MTCC 106, Arthrobacter protophormiae MTCC 2682, Rhodococcus rhodochrous MTCC 265, Alcaligens faecalis MTCC 126, Proteus- mirabilis MTCC 425, Enterobacter aerogenes MTCC 10208, Proteus vulgaris MTCC 426, Bacillus megaterium MTCC 428, Enterococcus faecalis MTCC 439, Streptococcus mutans- MTCC 497, Salmonella enterica MTCC 3858, Staphylococcus aureus MTCC 737, Pseudomonas aeruginosa MTCC 1688 and Bacillus subtilis MTCC 441. The extracts were also screened for phytochemicals like Carbohydrates, Tannins, Steroids, Terpenoids, Saponins, Flavanoids, Alkaloids and Soluble starch. Of the six solvent extracts of A. alba, ethyl acetate and acetone extracts of leaf and stem, with few exceptions, showed relatively high antibacterial activity. Benzene and chloroform extracts of A. alba showed a larger zone of inhibition against Salmonella enterica than other bacteria. A. alba leaf and stem extracts of different solvents showed good antibacterial activity against Gram negative bacteria than the Gram positive bacteria tested. Most of the solvent extracts of leaf and stem are effective on many bacteria tested than the positive control. The acetone and methanol extracts of leaf and stem showed maximum positive results towards the phytochemical constituents.

  11. Utilization of microbial community potential for removal of chlorpyrifos: a review.

    Science.gov (United States)

    Yadav, Maya; Shukla, Awadhesh Kumar; Srivastva, Navnita; Upadhyay, Siddh Nath; Dubey, Suresh Kumar

    2016-08-01

    Chlorpyrifos (CP) is the most commonly used pesticide in agricultural fields worldwide. Exposure to CP and its metabolites creates severe neuron-disorders in human beings. Improper handling and uncontrolled application of CP by farmers have lead to the contamination of surface and ground water bodies. Biodegradation offers an efficient and cost effective method for the removal of CP and other toxic organophosphorus pesticides from the contaminated environment. The degradation of CP by various microorganisms has been investigated by several researchers over the past few years. This review presents a critical summary of the recent published results on the biodegradation of CP. A diverse range of bacterial species such as Agrobacterium sp., Alcaligenes faecalis, Enterobacter sp. Arthrobacter sp. Bacillus pumilus, Pseudomonas sp. etc., fungal species like Trichoderma viridae, Aspergillus niger, Verticillium sp., Acremonium sp. Cladosporium cladosporiodes, etc. and certain algal species viz. Chlorella vulgaris, Spirulina platensis, Synechocystis sp., etc., have been shown to degrade CP. The efficacy of these communities for CP degradation in batch and continuous modes has also been discussed but more studies are required on continuous reactors. Also, the available published information on kinetics of biodegradation of CP along with the available results on molecular biological approaches are discussed in this work. PMID:25782532

  12. Nitrilase-catalyzed conversion of (R,S)-mandelonitrile by immobilized recombinant Escherichia coli cells harboring nitrilase.

    Science.gov (United States)

    Zhang, Xin-Hong; Liu, Zhi-Qiang; Xue, Ya-Ping; Xu, Ming; Zheng, Yu-Guo

    2016-07-01

    (R)-(-)-Mandelic acid (R-MA) is widely used both as a versatile intermediate for pharmaceuticals and a resolving agent in chiral resolution processes. In the current study, to improve the stability of operation, recombinant Escherichia coli cells expressing nitrilase from Alcaligenes faecalis were immobilized for the enantioselective hydrolysis of (R,S)-mandelonitrile to R-MA. Different immobilization methods including entrapment matrices, entrapment matrices cross-linked by cross-linking and polymerization agents, and direct cross-linking cells using glutaraldehyde (GA) or bionic silicon were investigated. To facilitate industrial solid-liquid separation, the direct cross-linking recombinant E. coli cells using diatomite/GA/polyethyleneimine with 135.95% relative activity compared with free cells was chosen using water as the reaction medium. The operational stability of the immobilized cells was obviously superior to that of free cells, without significant activity loss after 28 cycles of batch reaction and the successive production of R-MA could reach 1.88 M. Moreover, the immobilized cells showed good storage stability with about 52% relative activity after storing for 30 days at 4 °C. Therefore, the immobilized biocatalyst is very promising for upscale production of optically pure R-MA with high performance and low cost.

  13. 固定化细胞生物反应器处理含氰废水%Treatment of Cyanide Containing Wastewater by Immobilized Cell Bioreactor

    Institute of Scientific and Technical Information of China (English)

    鄢恒宇; 李青云; 刘幽燕

    2007-01-01

    将产碱杆菌Alcaligenes sp.DN25固定在聚氨酯泡沫载体上构成固定化细胞反应器,进行连续处理含氰废水研究.实验结果表明,反应器能够高效且稳定地处理含氰废水,有很好的氰负荷适应性,水力停留时间HRT和pH值对反应器氰去除率有一定影响,反应器运行前40 d降解率维持在90%;运行的40~60 d,系统中加入氨氮离子后,反应器对氰化物的降解率明显下降,仅85%左右,我们认为是氨氮连续加入和产物HCOOH的生成引起系统缓冲能力下降,使得pH显著降低而造成.

  14. Survey of bacterial contamination of environment of swimming pools in Yazd city, in 2013

    Directory of Open Access Journals (Sweden)

    Hossein Jafari Mansoorian

    2015-09-01

    Full Text Available Background: Infections are readily transmitted as a result of bacterial contamination of swimming pools. Therefore, hygiene and preventing the contamination of swimming pools is of particular importance. The objective of this study was to determine the amount of bacterial contamination in indoor pools of Yazd in 2013. Methods: In this descriptive and analytical study, all indoor swimming pools of Yazd (12 pools were evaluated during the spring and summer of 2013, in terms of bacterial contamination. In order to determine contamination, a sterile cotton swab was used for sampling. On average, 45 samples were taken from different surfaces in each pool (shower, dressing room, sitting places in sauna, platforms and around the pool. In total, about 540 samples from all pools were tested for bacterial contamination. Results: The results show that from 540 samples, bacterial contamination was observed in about 93 samples (17.22%; and was seen more in showers, edges of the pool and jacuzzis, and the slippers used in swimming pools. The most important isolated bacteria types were E. coli, Actinobacteria, Pseudomonas alcaligenes, Pseudomonas aeruginosa and Klebsiella pneumonia. Conclusion: The results indicate the presence of bacterial contamination on the surface of these places. It is recommended that health authorities should pay more attention to cleaning and disinfecting surfaces around the pool, showers, dressing rooms etc, to prevent infectious disease transfer as a result of contact with contaminated swimming pool surfaces.

  15. Kinetic modeling and half life study on bioremediation of crude oil dispersed by Corexit 9500

    International Nuclear Information System (INIS)

    Hydrocarbon pollution in marine ecosystems occurs mainly by accidental oil spills, deliberate discharge of ballast waters from oil tankers and bilge waste discharges; causing site pollution and serious adverse effects on aquatic environments as well as human health. A large number of petroleum hydrocarbons are biodegradable, thus bioremediation has become an important method for the restoration of oil polluted areas. In this research, a series of natural attenuation, crude oil (CO) and dispersed crude oil (DCO) bioremediation experiments of artificially crude oil contaminated seawater was carried out. Bacterial consortiums were identified as Acinetobacter, Alcaligenes, Bacillus, Pseudomonas and Vibrio. First order kinetics described the biodegradation of crude oil. Under abiotic conditions, oil removal was 19.9% while a maximum of 31.8% total petroleum hydrocarbons (TPH) removal was obtained in natural attenuation experiment. All DCO bioreactors demonstrated higher and faster removal than CO bioreactors. Half life times were 28, 32, 38 and 58 days for DCO and 31, 40, 50 and 75 days for CO with oil concentrations of 100, 500, 1000 and 2000 mg/L, respectively. The effectiveness of Corexit 9500 dispersant was monitored in the 45 day study; the results indicated that it improved the crude oil biodegradation rate.

  16. 一株毒死蜱降解细菌的分离鉴定及其在土壤修复中的应用%Isolation and characterization of a chlorpyrifos degrading bacteria and its bioremediation application in the soil

    Institute of Scientific and Technical Information of China (English)

    杨丽; 赵宇华; 张炳欣; 张昕

    2005-01-01

    从蔬菜大棚土壤中分离到一株能以毒死蜱为唯一碳源和能源生长的菌株DSP3,该菌在含毒死蜱(100mg/L)的酵母膏和蛋白胨与同样毒死蜱含量而无酵母膏蛋白胨的无机盐培养基中,18d对毒死蜱的降解率分别为98.6%和76.2%;在土壤实验中20d对毒死蜱(100mg/kg)的降解率接近100%,加入DSP3菌在蔬菜大棚新鲜土壤中能有效促进毒死蜱在土壤中的降解.根据生理生化特征、16S rDNA序列分析、(G+C)mol%测定和DNA同源性分析,将菌株DSP3鉴定为粪产碱杆菌(Alcaligenes faecalis).

  17. Fusion of binding domains to Thermobifida cellulosilytica cutinase to tune sorption characteristics and enhancing PET hydrolysis.

    Science.gov (United States)

    Ribitsch, Doris; Yebra, Antonio Orcal; Zitzenbacher, Sabine; Wu, Jing; Nowitsch, Susanne; Steinkellner, Georg; Greimel, Katrin; Doliska, Ales; Oberdorfer, Gustav; Gruber, Christian C; Gruber, Karl; Schwab, Helmut; Stana-Kleinschek, Karin; Acero, Enrique Herrero; Guebitz, Georg M

    2013-06-10

    A cutinase from Thermomyces cellullosylitica (Thc_Cut1), hydrolyzing the synthetic polymer polyethylene terephthalate (PET), was fused with two different binding modules to improve sorption and thereby hydrolysis. The binding modules were from cellobiohydrolase I from Hypocrea jecorina (CBM) and from a polyhydroxyalkanoate depolymerase from Alcaligenes faecalis (PBM). Although both binding modules have a hydrophobic nature, it was possible to express the proteins in E. coli . Both fusion enzymes and the native one had comparable kcat values in the range of 311 to 342 s(-1) on pNP-butyrate, while the catalytic efficiencies kcat/Km decreased from 0.41 s(-1)/ μM (native enzyme) to 0.21 and 0.33 s(-1)/μM for Thc_Cut1+PBM and Thc_Cut1+CBM, respectively. The fusion enzymes were active both on the insoluble PET model substrate bis(benzoyloxyethyl) terephthalate (3PET) and on PET although the hydrolysis pattern was differed when compared to Thc_Cut1. Enhanced adsorption of the fusion enzymes was visible by chemiluminescence after incubation with a 6xHisTag specific horseradish peroxidase (HRP) labeled probe. Increased adsorption to PET by the fusion enzymes was confirmed with Quarz Crystal Microbalance (QCM-D) analysis and indeed resulted in enhanced hydrolysis activity (3.8× for Thc_Cut1+CBM) on PET, as quantified, based on released mono/oligomers.

  18. Adaptability of microbial inoculators and their contribution to degradation of mineral oil and PAHs

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Five dominant bacteria strains(Acetobacter sp., Alcaligenes sp., Micrococcus sp., Arthrobacter sp. and Bacillus sp.) and five fungi strains (Cephalosporium sp. I, Cephalosporium sp. Ⅱ, Aspergillus sp. Ⅰ, Aspergillus sp. Ⅱ and Fusarium sp.) isolated from petroleum-contaminated soil were used to assess the potential capability of mineral oil and PAH enhanced degradation separately and jointly using the batch liquid medium cultivation with diesel oil spiked at 1000 mg/L. The experiment was performed on a reciprocal shaker in the darkness at 25℃ to 30℃ for 100 d. The dynamic variation in the activity of microbial inoculators in each treatment and the degradation of the target pollutants during the period of experiment were monitored. Results showed a more rapid biodegradation of mineral oil and PAHs at the beginning of the experiment (about 20 d) by dominant bacteria, fungi and their mixture than that of the indigenous microorganisms, however, thereafter an opposite trend was exhibited that the removal ratio by indigenous microorganisms was superior to any other dominant treatments and the tendency lasted till the end of the experiment, indicating the limited competitive capability of dominant microorganisms to degrade the contaminants, and the natural selection of indigenous microorganisms for use in the removal of the contaminants. At the end of the experiment, the removal ratio of mineral oil ranged from 56.8 % to 79.2 % and PAHs ranged from 96.8 % to 99.1% in each treatment by microbial inoculators.

  19. Removal of Copper by Eichhornia crassipes and the Characterization of Associated Bacteria of the Rhizosphere System

    Directory of Open Access Journals (Sweden)

    Raisa Kabeer

    2014-06-01

    Full Text Available Excess doses of trace element contamination make conventional water treatment methods less effective and more expensive, where in alternative biotechnological applications open up new opportunities with their reduced cost and lesser impacts to the environment. In the present investigation, effectiveness of aquatic macrophyte Eichhornia crassipes was tested for the removal of copper in laboratory conditions. Water samples were collected from macrophytes natural habitat and water tubs used for growing E. crassipes and analysed along with plant tissues for Cu content. The work also characterized the associated microbiota of the rhizosphere system of the E. crassipes as well as the wetland system of its occurrence. Copper concentration of the wetland water samples ranged from 0.009 to 0.03ppm. Six bacterial genera (Acinetobacter, Alcaligenes, Bacillus, Kurthia, Listeria and Chromobacterium were represented in rhizosphere of E.crassipes and 4 bacterial genera (Acinetobacter, Bacillus, Listeria and Chromobacterium were recorded in wetland water samples. Copper resistance studies of the bacterial isolates showed that out of 26 isolates from rhizosphere and 19 strains from water samples,12 of them showed low resistance (80% of copper during 15 days experiment. Copper accumulation was found to be high in the root followed by leaf and petiole. Results of the present study concluded that E. crassipes is an efficient plant for the removal of copper.

  20. Kinetic modeling and half life study on bioremediation of crude oil dispersed by Corexit 9500

    Energy Technology Data Exchange (ETDEWEB)

    Zahed, Mohammad Ali [School of Civil Engineering, Universiti Sains Malaysia, Engineering Campus, 14300 Nibong Tebal, Penang (Malaysia); Aziz, Hamidi Abdul, E-mail: cehamidi@eng.usm.my [School of Civil Engineering, Universiti Sains Malaysia, Engineering Campus, 14300 Nibong Tebal, Penang (Malaysia); Isa, Mohamed Hasnain [Civil Engineering Department, Universiti Teknologi PETRONAS, 31750 Tronoh, Perak (Malaysia); Mohajeri, Leila; Mohajeri, Soraya [School of Civil Engineering, Universiti Sains Malaysia, Engineering Campus, 14300 Nibong Tebal, Penang (Malaysia); Kutty, Shamsul Rahman Mohamed [Civil Engineering Department, Universiti Teknologi PETRONAS, 31750 Tronoh, Perak (Malaysia)

    2011-01-30

    Hydrocarbon pollution in marine ecosystems occurs mainly by accidental oil spills, deliberate discharge of ballast waters from oil tankers and bilge waste discharges; causing site pollution and serious adverse effects on aquatic environments as well as human health. A large number of petroleum hydrocarbons are biodegradable, thus bioremediation has become an important method for the restoration of oil polluted areas. In this research, a series of natural attenuation, crude oil (CO) and dispersed crude oil (DCO) bioremediation experiments of artificially crude oil contaminated seawater was carried out. Bacterial consortiums were identified as Acinetobacter, Alcaligenes, Bacillus, Pseudomonas and Vibrio. First order kinetics described the biodegradation of crude oil. Under abiotic conditions, oil removal was 19.9% while a maximum of 31.8% total petroleum hydrocarbons (TPH) removal was obtained in natural attenuation experiment. All DCO bioreactors demonstrated higher and faster removal than CO bioreactors. Half life times were 28, 32, 38 and 58 days for DCO and 31, 40, 50 and 75 days for CO with oil concentrations of 100, 500, 1000 and 2000 mg/L, respectively. The effectiveness of Corexit 9500 dispersant was monitored in the 45 day study; the results indicated that it improved the crude oil biodegradation rate.

  1. Targeting of the polyhydroxybutyrate biosynthetic pathway to the plastids of Arabidopsis thaliana results in high levels of polymer accumulation

    Energy Technology Data Exchange (ETDEWEB)

    Nawrath, C.; Poirier, Y.; Somerville, C. (Carnegie Institution of Washington, Stanford, CA (United States))

    1994-12-20

    In the bacterium Alcaligenes eutrophus, three genes encode the enzymes necessary to catalyze the synthesis of poly[(R)-(-)-3-hydroxybutyrate] (PHB) from acetyl-CoA. In order to target these enzymes into the plastids of higher plants, the genes were modified by addition of DNA fragments encoding a pea chloroplast transit peptide, a constitutive plant promoter, and a poly(A) addition sequence. Each of the modified bacterial genes was introduced into Arabidopsis thaliana by Agrobacterium-mediated transformation, and plants containing all three genes were obtained by sexual crosses. These plans accumulated PHB up to 14% of the dry weight as 0.2- to 0.7-[mu]m granules within plastids. In contrast to earlier experiments in which expression of the PHB biosynthetic pathway in the cytoplasm led to a deleterious effect on growth, expression of the PHB biosynthetic pathway in plastids had no obvious effect on the growth or fertility of the transgenic plants and resulted in a 100-fold increase in the amount of PHB in higher plants. The high level of PHB accumulation also suggests that the synthesis of plastid acetyl-CoA is regulated by a mechanism which responds to metabolic demand. 20 refs., 6 figs.

  2. Assessment of Sanitation and Food Bacterial Identification in the Governor Official Canteen of Makassar City

    Directory of Open Access Journals (Sweden)

    Anwar Mallongi

    2016-08-01

    Full Text Available Food is one of the important parts to human health considering that diseases could be caused by food. Cases of foodborne illness (foodborne disease can be affected by processing, storage, and food serving that are not meet sanitary requirements. This research aimed to obtain an overview of the quality of food is based on the presence of bacteria and sanitary conditions in Canteen Office of the Governor of South Sulawesi Province. This type of research is descriptive observational. The population in this research is all the food that is in Canteen Office of the Governor of South Sulawesi province and obtained ten samples by using purposive sampling method. Data obtained from direct observation using observation sheet and results of laboratory tests on food samples taken from the Canteen Office of the Governor of South Sulawesi province. The data analysis was using descriptive analysis. The results showed that from ten food samples in Governor's Office Canteen, two samples are containing Escherichia coli bacteria, three food samples are containing Klebsiella sp bacteria, two samples are containing Proteus mirabilis bacteria, one sample is containing Proteus vulgaris bacteria, one sample is containing Enterobacter agglomerans, and one sample is containing Alcaligenes faecalis bacteria. Based on observational assessment for the sanitary conditions in the canteen Office of the Governor of South Sulawesi province in ten canteen, there are no qualified canteen which reach 70% of the total assessment.

  3. Trends of bio-hydrogen research and development in Europe. Report for the Research Institute of Innovative Technology for the Earth (RITE), Tokyo, Japan

    Energy Technology Data Exchange (ETDEWEB)

    Huesing, B.

    1997-03-01

    Research into applied aspects of biological hydrogen production is carried out on a much lower level in Europe than basic hydrogenase research. However, the screening for good H{sub 2} producers, their cultivation, and the development of optimised culture and bioreactor systems has never been a strength in Europe. Although there are a few good groups in Europe major contributions in this field traditionally come from countries outside Europe. However, in the nineties a special application-oriented research subfield has begun to evolve in Europe: the use of genetic enginering to rationally optimise H{sub 2} producing organisms. The most important players who focus on green algae, cyanobacteria, and purple bacteria can be found in Germany, France, and Sweden. In European biohydrogen research, a large and diverse variety of organisms is investigated. Among the organisms most thoroughly studied are Alcaligenes eutrophus, Escherichia coli, Rhodobacter capsulatus, sulfate-reducing bacteria, and methanogenic bacteria. Moreover, a leading position has been obtained with respect to molecular genetics of green algae and cyanobacteria, albeit on a low level. The fact that such a broad range of diverse organisms is studied has advantages and disadvantages. A positive aspect is that the multitude of different approaches had led to several unexpected results which had otherwise been overlooked. On the other hand, an obvious link to biohydrogen production is often lacking. Moreover, there are many 'me-too' approaches and results in which previous findings are only reproduced for another organism as well. (orig.)

  4. ISOLATION AND CHARACTERIZATION OF A LIPOLYTIC AND PHYTASE PRODUCING PROBIOTIC FOR POTENTIAL APPLICATION IN POULTRY FEED

    Directory of Open Access Journals (Sweden)

    K. RAZDAN

    2012-07-01

    Full Text Available In the current study a total of 35 bacterial isolates from 17 food and fecal samples were examined. Five among those were earmarked as putative probiotic candidates. All the selected isolates survived the low pH conditions of 2.0, and resisted the presence of bile salts (0.02-0.25% and NaCl (2-14 %, indicating their ability to survive in the gastrointestinal (GI tract conditions and hence making them suitable candidates for probiotic applications. The selected probiotic isolates showed considerable levels of hydrophobicity indicating their potential adhering properties with the gut epithelium. In addition the five selected probiotic candidates depicted substantial antagonistic action against potent pathogens like Bacillus subtilis, B. cereus, Escherichia coli, Pseudomonas aeruginosa, P. alcaligenes, Staphylococcus aureus and Streptococcus sp. The isolates CM-4 and KD-7 were most remarkable as they inhibited all the pathogens tested including S. aureus and Streptococcus sp. Extracellular enzymatic studies showed that all the five strains produced phytase whereas isolate CM-4 and KD-7 were the only lipase producers found. However no amylase protease activity was detected. Isolate CM-4 was found to be the best among all five as it showed all desirable probiotic features viz. bile salt, NaCl and pH tolerance, maximum hydrophobicity, antagonistic action against pathogens, phytase and lipase activity, therefore was identified by using 16S rDNA sequencing and MEGA BLAST.

  5. Potential pathogenic bacteria in metalworking fluids and aerosols from a machining facility.

    Science.gov (United States)

    Perkins, Sarah D; Angenent, Largus T

    2010-12-01

    The metalworking and machining industry utilizes recirculating metalworking fluids for integral aspects of the fabrication process. Despite the use of biocides, these fluids sustain substantial biological growth. Subsequently, the high-shear forces incurred during metalworking processing aerosolize bacterial cells and may cause dermatologic and respiratory effects in exposed workers. We quantified and identified the bacterial load for metalworking fluid and aerosol samples of a machining facility in the US Midwest during two seasons. To investigate the presence of potentially pathogenic bacteria in fluid and air, we performed 16S rRNA gene surveys. The concentration of total bacterial cells (including culturable and nonculturable cells) was relatively constant throughout the study, averaging 5.1 × 10⁸ cells mL⁻¹ in the fluids and 4.8 × 10⁵ cells m⁻³ in the aerosols. We observed bacteria of potential epidemiologic significance from several different bacterial phyla in both fluids and aerosols. Most notably, Alcaligenes faecalis was identified through both direct sequencing and culturing in every sample collected. Elucidating the bacterial community with gene surveys showed that metalworking fluids were the source of the aerosolized bacteria in this facility. PMID:20955193

  6. Isolation and Characterization of Heterotrophic Nitrifying Strain W1

    Institute of Scientific and Technical Information of China (English)

    吕永康; 王荀; 刘博凯; 刘玉香; 杨晓华

    2012-01-01

    In a high concentration substrate medium, a heterotrophic bacterium with high removal efficiency of ammonium, named W1, was isolated from activated sludge of coking wastewater treatment facility. The bacterium was Gram-negative, rod-shaped, and identified preliminarily as Alcaligenes sp. according to its morphological and physiological properties and its 16S rRNA gene sequence analysis. In the high concentration ammonium medium (400 mg·L 1 4 NH -N), the effects of C source, N source, C/N ratio and initial pH of medium on ammonium removal were investigated in order to determine the optimal condition for strain W1. The maximum ammonium removal was around 95% in 4 days in an improved medium. The production of N 2 gas was examined in a closed system that was full of pure oxygen at the beginning. N 2 gas was detected in the system after 4 days of cultivation, which further testified that strain W1 has heterotrophic nitrification and aerobic denitrification abilities simultaneously.

  7. Complex structure of a bacterial class 2 histone deacetylase homologue with a trifluoromethylketone inhibitor

    Energy Technology Data Exchange (ETDEWEB)

    Nielsen, Tine Kragh [Abteilung für Molekulare Strukturbiologie, Institut für Mikrobiologie und Genetik and GZMB, Justus-von-Liebig Weg 11, 37077 Göttingen (Germany); Hildmann, Christian; Riester, Daniel; Wegener, Dennis; Schwienhorst, Andreas [Abteilung für Molekulare Genetik und Präparative Molekularbiologie, Institut für Mikrobiologie und Genetik, Grisebachstrasse 8, 37077 Göttingen (Germany); Ficner, Ralf, E-mail: rficner@gwdg.de [Abteilung für Molekulare Strukturbiologie, Institut für Mikrobiologie und Genetik and GZMB, Justus-von-Liebig Weg 11, 37077 Göttingen (Germany)

    2007-04-01

    The crystal structure of HDAH FB188 in complex with a trifluoromethylketone at 2.2 Å resolution is reported and compared to a previously determined inhibitor complex. Histone deacetylases (HDACs) have emerged as attractive targets in anticancer drug development. To date, a number of HDAC inhibitors have been developed and most of them are hydroxamic acid derivatives, typified by suberoylanilide hydroxamic acid (SAHA). Not surprisingly, structural information that can greatly enhance the design of novel HDAC inhibitors is so far only available for hydroxamic acids in complex with HDAC or HDAC-like enzymes. Here, the first structure of an enzyme complex with a nonhydroxamate HDAC inhibitor is presented. The structure of the trifluoromethyl ketone inhibitor 9,9,9-trifluoro-8-oxo-N-phenylnonanamide in complex with bacterial FB188 HDAH (histone deacetylase-like amidohydrolase from Bordetella/Alcaligenes strain FB188) has been determined. HDAH reveals high sequential and functional homology to human class 2 HDACs and a high structural homology to human class 1 HDACs. Comparison with the structure of HDAH in complex with SAHA reveals that the two inhibitors superimpose well. However, significant differences in binding to the active site of HDAH were observed. In the presented structure the O atom of the trifluoromethyl ketone moiety is within binding distance of the Zn atom of the enzyme and the F atoms participate in interactions with the enzyme, thereby involving more amino acids in enzyme–inhibitor binding.

  8. 碱性脂肪酶的研究开发

    Institute of Scientific and Technical Information of China (English)

    李琴; 朱文婷; 刘锐; 陆爽; 江咏雪; 陈霞

    2016-01-01

    本项目以菜市场、乳品厂、油脂厂采集的土样为实验材料,分别进行菌种的初筛培养及Rodamine B筛选法富集培养,并利用摇瓶发酵培养扩增菌种.通过对菌种发酵所产酶的活力进行测定,优选出能高效产碱性脂肪酶的菌种.通过鉴定,获得的菌种为油脂厂采集分离得到的革兰氏阴性菌,产酶活力为60IU/mL,经检测此菌种为Alcaligenes sp.最后对该菌种所产酶添加至清洁剂中的比例进行优选,得出其比例为18%去污效果最佳.

  9. 郫县豆瓣中可培养细菌多样性分析及酶活性初筛%IsoIation of CuIturabIe Microorganisms in Pixian Bean Paste and Its PhyIogenetic Diversity AnaIysis and Enzyme Activity Screening

    Institute of Scientific and Technical Information of China (English)

    赵辉平; 车振明; 关统伟; 董丹; 张怡; 张静; 李可; 郑萍; 陈健骁; 马力

    2015-01-01

    In order to study and improve the application of modern biological science and technology to the traditional food production,the method of culture-dependent method and the phylogenetic analysis of 16S rRNA gene sequence are used.Microorganisms isolated from Pixian bean paste are studied. Thirty-five typical strains are sequenced and analyzed diversity duplicate removal from 2 1 9 cultured strains.The research results show that,Pixian bean paste has a rich microbial diversity,which including eight genera,including Bacillus which is the dominant group,accounting for 59.8%,and 11.4% for Myroides,5.72% for Providencia,5.72% for Alcaligenes,2.86% for Massilia,2.86%for Virgibacillus,2.86% for Morganella,2.86% for Geobacillus,2.86% for Fictibacillus.The results of screening of amylase and protease show that the microbial from bean paste with high enzyme activity ,among which ,the positive strains produce protease accounting for 70.1%,the positive strains produce amylase accounting for 64.8%.This study provides theoretical basis and production materials for large-scale modernized production.%为了将现代生物科学技术应用于传统食品生产的研究和改良,应用纯培养方法和基于16 S rRNA基因序列的系统发育分析,对郫县豆瓣中的细菌进行了研究,对所得的219株纯培养细菌经去重后的35株典型菌株进行了16 S rRNA 基因测序和多样性分析。研究结果表明,郫县豆瓣中细菌多样性丰富,包含8个属,其中Bacillus是优势类群,占所有菌株比例达59.8%;另外还含有 Myroides(11.4%), Providencia(5.72%),Alcaligenes (5.72%),Massilia (2.86%),Virgibacillus (2.86%),Morganella (2.86%),Geobacillus(2.86%),Fictibacillus(2.86%)。淀粉酶和蛋白酶筛选结果表明,豆瓣细菌具有良好的产酶活性,其中产蛋白酶的阳性菌株占70.1%,产淀粉酶阳性菌株占64.8%。该研究为

  10. Contagem, isolamento e caracterização de bactérias psicrotróficas contaminantes de leite cru refrigerado Counting, isolation and characterization of psychrotrophic bacteria from refrigerated raw milk

    Directory of Open Access Journals (Sweden)

    Edna Froeder Arcuri

    2008-11-01

    Full Text Available Com os objetivos de quantificar, isolar e caracterizar bactérias psicrotróficas contaminantes de leite cru refrigerado, produzido na região da Zona da Mata de Minas Gerais e Sudeste do Rio de Janeiro, foram analisadas amostras de leite coletadas de 20 tanques coletivos e 23 tanques individuais. As contagens de bactérias psicrotróficas nas amostras de leite para os dois tipos de tanques de refrigeração variaram entre 10² e 10(7 Unidades Formadoras de Colônias (UFC ml-1, porém, um maior número de tanques coletivos apresentou contagens acima de 1 x 10(5 UFC ml-1. Foi verificada a predominância de bactérias psicrotróficas gram-negativas (81,2%, que foram identificadas pelos sistemas API 20E e API 20NE nos gêneros: Aeromonas, Alcaligenes, Acinetobacter, Burkholderia,Chryseomonas, Enterobacter, Ewingella, Klebsiella, Hafnia, Methylobacterium, Moraxella, Pantoea, Pseudomonas, Serratia, Sphingomonas e Yersinia. As bactérias gram-positivas (18,8% foram identificadas com API 50 CH, API Coryne e API Staph, nos gêneros: Bacillus, Brevibacterium, Cellum/Microbacterium, Kurthia e Staphylococcus. Os sistemas API utilizados não identificaram todos os isolados bacterianos. Pseudomonas foi o gênero mais isolado e P. fluorescens foi a espécie predominante. A maioria dos isolados bacterianos apresentou atividade proteolítica e/ou lipolítica a temperaturas de refrigeração de 4°C, 7°C e 10°C, evidenciando seu alto potencial de deterioração do leite e dos produtos lácteos. Os resultados ressaltam que maior atenção deve ser dada aos procedimentos que impeçam a contaminação do leite por esses microrganismos.This study aimed to quantify, isolate and characterize psychrotrophic bacteria from refrigerated raw milk produced at the ‘Mata’ Region of Minas Gerais State and Southeast of Rio de Janeiro State, Brazil. Raw milk samples, were collected at the farms, from 20 collective refrigerated tanks and 23 individual refrigerated tanks

  11. Biodegradation of carbendazim by a highly effective combined bacterial culture%高效复合菌对多菌灵的生物降解

    Institute of Scientific and Technical Information of China (English)

    朱凤晓; 孔洁; 由焦化; 呼世斌; 秦宝福

    2011-01-01

    将多菌灵降解菌Alcaligenes sp.和Rhodococcua sp.(编号为A和R)按不同比例进行复配,并采用三波长校正法和HPLC法测定不同复配降解体系中多菌灵的残留量,比较了纯培养和复合菌群对多菌灵的降解效果,最后对高效复合菌的降解条件进行了优化.试验结果表明,得到的高效降解复合菌群AR5(A∶R复配比例1∶4),培养24 h后可完全降解100mg·L-1的多菌灵,对200mg·L-1多菌灵的降解率为74.25%,明显优于单一菌株的降解效果.同时,该复合菌群对高浓度多菌灵也具有较好的耐受和降解能力,72 h内可将初始浓度为600 mg·L-1的多菌灵降解至10mg·L-1左右.正交优化试验结果表明,该复合菌群的最优降解条件为温度30℃、pH=6.0、接种量7%,该条件下多菌灵的降解率可达75.76%.添加少量氮源(如尿素和酵母浸粉)可以促进复合菌对多菌灵的生物降解.%Two carbendazim-degrading strains, an Alcaligenes sp. designated A and a Rhodococcus sp. designated R, were mixed in different proportions to develop a highly effective bacterial consortium, whose degradation conditions were then optimized. During the test, a ternary wavelength spectrophotometric method and HPLC were used to determine the residual carbendazim in the culture medium, based on which the degradation rates of individual strains and the combined bacteria were calculated. The combined bacterial consortium AR5 showed optimal degradation capability and could completely degrade 100 mg· L - 1 carbondazim within 24 hours of cultivation, while the degrading rate for 200 mg· L - 1 carbendazim reached 74.25%,which was superior to that of either individual strain alone. Moreover, the mixed culture had excellent tolerance and degradation ability against carbendazim of high concentrations, as carbendazim at 600 mg· L-1 was degraded to about 10 mg· L-1 within 72 hours. The result of an orthogonal optimization experiment showed that the optimal

  12. 15N-标记的气相色谱-同位素比质谱与气相气谱-质谱联用鉴定微生物反硝化作用%Isotopic Confirmation of Occurrence of Microbial Denitrification Based on N2 and N2O Production Monitored by Gas Chromatography/Isotope Ratio Mass Spectrometry and Gas Chromatography/Mass Spectrometry

    Institute of Scientific and Technical Information of China (English)

    艾国民; 郑海燕; 张敏; 刘志培

    2011-01-01

    A new 15N-labled procedure based on isotopic ratio monitoring of N2 by GC-isolink-IRMS (isotope artio mass spectrometer) with high precision and of N2() by GC-MS in SIM mode with high sensitivity was developed for the identification and confirmation of in vitro microbial denitrification. Gas metabolites, produced by Alcaligenes faecalis, including atmospheric gases in the confined culti-vation tube, were analyzed using GS-CarbonPlot column, and a satisfactory baseline separation of N2/ O2, CO2, N2O and water vapour was obtained in a single run, which eliminated CO2 and H2O inter-ference contributed to isotopic determination of N2 and N2O. In δ15N analysis of N2, combustion oven in GC isolink can remove all of the O2in the sample gases, and precise and accurate δ15N measurement can be conducted. The δ15 N value of N2 of 15N-labled sample, 15N-natural abundance control, and 15N-KNO3 blank control were (2. 394 ± 0. 261)%0, (0. 022 + 0. 044)%0 and (0. 315 ± 0. 045)%0, respectively. In addition, significant increase in relative isotopic abundance of 14.15N2O and 15.15N2O (RT = 2. 99 min) to 14.14N2O was observed, indicating N2and N2O production from denitrification by A. Faecalis. This proposed identification procedure, providing isotopic evidence of N2 and/or N2O production based on the marked enrichment in the N isotope ratio, is rapid, sensitive, accurate and precise to indentify and confirm the occurrence of microbial denitrificaiton, especially for new isolated and screened ones. We have confirmed the denitrifying activity by several strains of microorganism screened from the environment using this procedure. This procedure has also been applied in confir-ming the N2 production by nitrifier denitrification under defined conditions.%以好氧反硝化菌-产碱杆菌(Alcaligenes faecalis)在15N-KN03标记反硝化培养下所产气体与培养管中空气的混合气体为分析对象,在样品中N2/O2,CO2,N2O,H2O基线分离的基础上,利用气相色谱-同

  13. Avaliação da microbiota ocular em pacientes com disfunção do filme lacrimal Evaluation of conjunctival flora in patients with tear film dysfunction

    Directory of Open Access Journals (Sweden)

    Melissa Megumi Tomimatsu

    2009-12-01

    Full Text Available OBJETIVO: Avaliar a microbiota conjuntival em olhos com disfunção do filme lacrimal, e a modificação desta microbiota após a colocação de plug de silicone no canalículo inferior. MÉTODOS: Série de casos intervencionais não comparativos para avaliar 68 olhos de 41 pacientes com disfunção do filme lacrimal, durante o período de 2002 a 2007, na Universidade Federal de São Paulo. Todos os pacientes foram submetidos à colheita de amostras de raspado conjuntival de fundo-de-saco inferior para cultivo em Brain heart infusion broth. Os vinte e dois pacientes submetidos à colocação de plug de silicone repetiram a colheita de raspado conjuntival um mês após o procedimento. RESULTADOS: Dos 68 olhos avaliados, 47 apresentaram crescimento bacteriano nas amostras colhidas. Nove diferentes espécies de bactérias foram identificadas: Staphylococcus coagulase negativa em 66,66%, Staphylococcus aureus em 13,72%, Corynebacterium sp em 5,86%, Enterobacter aerogenes em 3,92%, Streptococcus hemolítico do grupo viridans em 1,96%, Serratia sp em 1,96%, Alcaligenes xylosoxidans spp em 1,96%, Corynebacterium xerosis em 1,96%, e Proteus mirabilis em 1,96%. Staphylococcus coagulase negativa (SCN foi o microrganismo mais frequentemente isolado tanto antes quanto após o plug de silicone. A sensibilidade do SCN à Oxacilina antes da colocação do plug era de 87,50%, e, após, de 73,68%. CONCLUSÃO: A microbiota em olhos com disfunção do filme lacrimal é bastante semelhante à encontrada em olhos normais. A resistência de SCN à Oxacilina foi um pouco maior após o implante do plug de silicone.PURPOSE: To evaluate conjunctival microbiota in eyes with tear film dysfunction and its modification after punctal occlusion with silicone plug. METHODS: Non comparative interventional case series study to evaluate 68 eyes of 41 patients with tear film dysfunction, from 2002 to 2007, followed in Federal University of Sao Paulo. Samples for culture were all

  14. Biodiversity of Mesophilic Microbial Community BYND-8 Capability of Lignocellulose Degradation and Its Effect on Biogas Production%复合菌系BYND-8的种群组成及其对沼气产量的影响

    Institute of Scientific and Technical Information of China (English)

    王伟东; 宋亚彬; 王彦杰; 高亚梅; 荆瑞勇; 崔宗均

    2011-01-01

    为了明确1组在中温下(30℃)高效分解木质纤维素的复合菌系的菌群组成.研究复合菌系预处理秸秆对沼气发酵的影响,利用平板分离法和变性梯度凝胶电泳(DGGE)法研究了中温木质纤维素降解复合菌系BYND-8的菌种组成多样性,通过添加该复合系菌液到以牛粪为原料的沼气发酵体系,研究了添加秸秆降解液对沼气产量的影响.利用平板法分离得到了6株细菌,它们与Serratia sp.PSGB 13、Serratia marcescens strain UFLA-25LS、Serratia marcescens strain DAP33、Alcaligenes sp.YcX-20、Stenotrophomonas mahophilia strain c6和Bacillus cereus isolate BRL02-71的相似率分别达到了99%、100%、96%、100%、100%和99%.同时利用DGGE方法还检测到了1株利用平板分离法没有获得到的细菌,它的16S rDNA V3区的序列与Uncultured bacterium clone ATB-KS-1446具有100%的同源性.稻秆经复合菌系BYND-8预处理后应用于沼气发酵中,在发酵的前15d内,累积产气量达到13 167 mL,甲烷产量达到7 248 mL.比对照分别提高了44.5%和95.3%.复合菌系具有较高的菌种组成多样性,将复合菌系应用于沼气发酵的原料预处理过程中,可以将产气时间提前,并提高产气量.%The biodiversity of a mesophilic microbial community BYND-8 capable of degrading lignocellulose at 30℃ was detected using denaturing gradient gel electrophoresis(DGGE) and the isolation of pure cultures, and the effect of the liquid of rice straw degradation by BYND-8 on biogas production was measured. Six bacterial strains were isolated using peptone cellulose solution medium, and the highest similarities of their 16S rDNA gene sequences to Serratia sp. PSGB 13, S. marcescens strain UFLA-25LS, S. marcescens strain DAP33, Alcaligenes sp. YcX-20, Stenotrophomonus maltophilia strain C6, Bacillus cereus isolate BRL02-71 were 99% , 100% , 96% ,100% , 100% and 99% , respectively. In addition, one band was detected besides six bands of

  15. Avaliação da contaminação bacteriana em desinfetantes de uso domiciliar Evaluation of bacterial contamination in disinfectants for domestic use

    Directory of Open Access Journals (Sweden)

    Fumie Miyagi

    2000-10-01

    Full Text Available OBJETIVO: Avaliar desinfetantes de uso domiciliar, identificando a presença de bactérias contaminantes, e conhecer o nível de tolerância dessas bactérias ao cloreto de benzalcônio. MÉTODOS: Foram adquiridas aleatoriamente no comércio da região metropolitana de São Paulo, SP, Brasil, 52 amostras de desinfetantes de uso domiciliar para análise quanto à presença de bactérias contaminantes. O nível de tolerância dessas bactérias ao cloreto de benzalcônio foi determinado pelo método da macrodiluição em caldo. RESULTADOS: De 52 amostras, 16 (30,77% estavam contaminadas por bactérias Gram negativas, com contagens variando entre 10(4 e 10(6 UFC/ml. Esses contaminantes foram identificados como Alcaligenes xylosoxidans, Burkholderia cepacia e Serratia marcescens. As Concentrações Inibitórias Mínimas (CIM: mg/ml do cloreto de benzalcônio para S. marcescens, A. xylosoxidans e B. cepacia foram: 2,48, 1,23 e 0,30, respectivamente. CONCLUSÕES Os desinfetantes de uso domiciliar à base de compostos de amônio quaternário são passíveis de contaminação por bactérias. As CIM do cloreto de benzalcônio para as bactérias contaminantes estavam abaixo das concentrações do princípio ativo presente nos desinfetantes, indicando que a tolerância ao biocida não é estável, podendo ser perdida com o cultivo das bactérias em meios de cultura sem o biocida.OBJECTIVE: To evaluate disinfectants for domestic use for the presence of bacteria, identify them, and determine their tolerance level to benzalkonium chloride. METHODS: Fifty-two samples of commercially available disinfectants for domestic use were acquired at random in the metropolitan area of São Paulo, Brazil, and analyzed to detect the presence of bacterial contaminants. The isolated organisms were identified and their tolerance level to benzalkonium chloride was determined by broth macrodilution method. RESULTS: Sixteen (30.77% of fifty-two disinfectants sampled were

  16. Microorganisms associated with post-harvest green olives deteriorations in Morocco

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    Faid, M.

    1994-10-01

    Full Text Available Altered green olive fruits harvested by the pole slender method were studied for the microorganisms involved in post-harvest alterations of the fruits before the fermentation process. The determinations included: standard plate count, Gram-negative bacteria (conforms and pseudomonads, bacillus, and yeasts. Results showed that the alterations are due first to yeasts and their interactions with pseudomonads and conforms. The most frequent yeasts were represented by the species: Debaryomyces hansenii, Rodothorula glutinis, Pichia membranefaciens, P. Anomala and Candida Bacarum. Gram-negative fermenting bacteria were represented by the species: Envinia carotovora, Hafnia alvei, Enterobacter agglomerans, E. Aerogenes and Serratia marcescens, S. liquefaciens and Shigella flexneri. The oxidase-positive bacteria were most abundant and mainly dominated by Pseudomonas species including P. aeruginosa, P. alcaligenes and P. Syringae. Most of the isolates of these microorganisms were cellulolytic and lipolytic. bacillus especies were also isolated and identified. The main species were Bacillus megaterium, B. pumilus, B. cereus and B. olei. Bacillus species seem not involved in olive deteriorations

    Se estudiaron los microorganismos envueltos en las alteraciones postcosecha de aceitunas verdes alteradas recolectadas mediante el método de vareo y antes del proceso de fermentación. Las determinaciones incluyeron: recuento estándar en placa, bacterias gram-negativa (coliformes y pseudomonas, bacillus y levaduras. Los resultados mostraron que las alteraciones son debidas en primer lugar a las levaduras y a sus interaciones con pseudomonas y coliformes. Las levaduras más frecuentes estuvieron representadas por las especies: Debaryomyces hansenii, Rodothorula glutinis, Pichia membranefaciens, P. anómala y Candida bacarum. Las bacterias gram

  17. Efficacy of intraoperative vancomycin in irrigating solutions on aqueous contamination during phacoemulsification

    Directory of Open Access Journals (Sweden)

    Srinivasan Renuka

    2008-01-01

    Full Text Available Purpose: To study the efficacy of adding vancomycin in irrigating solutions, in comparison to topical antibiotic given preoperatively for a day, during phacoemulsification, in reducing the anterior chamber (AC contamination. Settings and Design: This was a prospective, interventional, hospital-based study. Materials and Methods: This was a study involving 400 eyes of 400 paitens, undergoing routine phacoemulsification between January 2004 and June 2006. The patients were non-randomly assigned to two groups: Group 1 included 180 patients, who received topical ciprofloxacin eye-drops (four-hourly for a day preoperatively and Group 2 included 220 patients, who underwent phacoemulsification with vancomycin (20 µg/ml in the irrigating solution. Anterior chamber aspirate obtained at the end of the surgery was sent for microbial workup. The number of positive cultures in both the groups was determined. Statistical analysis: This was performed using Chi-square test. Results: Aqueous samples showed microbial growth in 38 (21.1% out of 180 eyes in Group 1 and in 17 (7.7% out of 220 eyes in Group 2 ( P = 0.001. Coagulase-negative staphylococcus was the most common organism in both the groups. Aqueous samples from four eyes in group 1 showed multiple organisms, while none of the sample from group 2 showed more than one organism. None of the eyes in either group showed fungal contamination. One patient in Group 1 developed endophthalmitis, and the causative organism was Alcaligenes faecalis. All patients were followed up for a minimum of six months (range: 6 to 14 months and mean: 9.3 months. Conclusion: Addition of vancomycin in irrigating solutions is more efficacious in reducing AC contamination in comparison to topical antibiotic administered a day preoperatively.

  18. Precipitation of Phosphate Minerals by Microorganisms Isolated from a Fixed-Biofilm Reactor Used for the Treatment of Domestic Wastewater

    Directory of Open Access Journals (Sweden)

    Almudena Rivadeneyra

    2014-04-01

    Full Text Available The ability of bacteria isolated from a fixed-film bioreactor to precipitate phosphate crystals for the treatment of domestic wastewater in both artificial and natural media was studied. When this was demonstrated in artificial solid media for crystal formation, precipitation took place rapidly, and crystal formation began 3 days after inoculation. The percentage of phosphate-forming bacteria was slightly higher than 75%. Twelve major colonies with phosphate precipitation capacity were the dominant heterotrophic platable bacteria growing aerobically in artificial media. According to their taxonomic affiliations (based on partial sequencing of the 16S rRNA, the 12 strains belonged to the following genera of Gram-negative bacteria: Rhodobacter, Pseudoxanthobacter, Escherichia, Alcaligenes, Roseobacter, Ochrobactrum, Agromyce, Sphingomonas and Paracoccus. The phylogenetic tree shows that most of the identified populations were evolutionarily related to the Alphaproteobacteria (91.66% of sequences. The minerals formed were studied by X-ray diffraction, scanning electron microscopy (SEM, and energy dispersive X-ray microanalysis (EDX. All of these strains formed phosphate crystals and precipitated struvite (MgNH4PO4·6H2O, bobierrite [Mg3(PO42·8H2O] and baricite [(MgFe3(PO42·8H2O]. The results obtained in this study show that struvite and spherulite crystals did not show any cell marks. Moreover, phosphate precipitation was observed in the bacterial mass but also near the colonies. Our results suggest that the microbial population contributed to phosphate precipitation by changing the media as a consequence of their metabolic activity. Moreover, the results of this research suggest that bacteria play an active role in the mineral precipitation of soluble phosphate from urban wastewater in submerged fixed-film bioreactors.

  19. 西太平洋"暖池"海床深部沉积物中的细菌类群

    Institute of Scientific and Technical Information of China (English)

    赵晶; 曾润颖

    2008-01-01

    通过16s rDNA克隆文库构建、PCR-RFLP分析等方法,对西太平洋"暖池"区海床以下230 cm深度的沉积物中的细菌类群组成进行了分析.结果表明该海区深部沉积物中的细菌类群主要包括α-变形菌(Proteobacteria),β-变形菌、CFB类群(CytophagaIFlexibacteria/Bacteroides)、酸杆菌(Acidobacteira)和革兰氏阳性菌等,各个类群的菌属组成均较为简单.其中α-变形菌为最优势菌群,β-变形菌为次优势菌群,它们的优势菌种分别为少动鞘氨醇单胞菌(Sphingomonas paucimobilis)和产碱假单胞菌(Pseudomonas alcaligenes).CFB类群中的细菌种类较为单一,主要为黄杆菌属(Flavobacterium).革兰氏阳性菌在该深度沉积物中的数量也较多,主要为地芽孢杆菌属(Geobacillus).对细菌类群的分析表明西太平洋"暖池"区该深度的沉积物中仍然存在较为丰富的有机物质,而这些深部生物圈中的细菌在"暖池"区海底沉积物环境的氮循环中可能起着重要的作用.

  20. Novel aromatic ring-hydroxylating dioxygenase genes from coastal marine sediments of Patagonia

    Directory of Open Access Journals (Sweden)

    Ferrero Marcela A

    2008-03-01

    Full Text Available Abstract Background Polycyclic aromatic hydrocarbons (PAHs, widespread pollutants in the marine environment, can produce adverse effects in marine organisms and can be transferred to humans through seafood. Our knowledge of PAH-degrading bacterial populations in the marine environment is still very limited, and mainly originates from studies of cultured bacteria. In this work, genes coding catabolic enzymes from PAH-biodegradation pathways were characterized in coastal sediments of Patagonia with different levels of PAH contamination. Results Genes encoding for the catalytic alpha subunit of aromatic ring-hydroxylating dioxygenases (ARHDs were amplified from intertidal sediment samples using two different primer sets. Products were cloned and screened by restriction fragment length polymorphism analysis. Clones representing each restriction pattern were selected in each library for sequencing. A total of 500 clones were screened in 9 gene libraries, and 193 clones were sequenced. Libraries contained one to five different ARHD gene types, and this number was correlated with the number of PAHs found in the samples above the quantification limit (r = 0.834, p nahAc-like genes, phnAc-like genes as identified in Alcaligenes faecalis AFK2, and phnA1-like genes from marine PAH-degraders from the genus Cycloclasticus. Conclusion These results show the presence of hitherto unidentified ARHD genes in this sub-Antarctic marine environment exposed to anthropogenic contamination. This information can be used to study the geographical distribution and ecological significance of bacterial populations carrying these genes, and to design molecular assays to monitor the progress and effectiveness of remediation technologies.

  1. Isolation and characterization of a glyphosate-degrading rhizosphere strain, Enterobacter cloacae K7.

    Science.gov (United States)

    Kryuchkova, Yelena V; Burygin, Gennady L; Gogoleva, Natalia E; Gogolev, Yuri V; Chernyshova, Marina P; Makarov, Oleg E; Fedorov, Evgenii E; Turkovskaya, Olga V

    2014-01-20

    Plant-growth-promoting rhizobacteria exert beneficial effects on plants through their capacity for nitrogen fixation, phytohormone production, phosphate solubilization, and improvement of the water and mineral status of plants. We suggested that these bacteria may also have the potential to express degradative activity toward glyphosate, a commonly used organophosphorus herbicide. In this study, 10 strains resistant to a 10 mM concentration of glyphosate were isolated from the rhizoplane of various plants. Five of these strains--Alcaligenes sp. K1, Comamonas sp. K4, Azomonas sp. K5, Pseudomonas sp. K3, and Enterobacter cloacae K7--possessed a number of associative traits, including fixation of atmospheric nitrogen, solubilization of phosphates, and synthesis of the phytohormone indole-3-acetic acid. One strain, E. cloacae K7, could utilize glyphosate as a source of P. Gas-liquid chromatography showed that E. cloacae growth correlated with a decline in herbicide content in the culture medium (40% of the initial 5mM content), with no glyphosate accumulating inside the cells. Thin-layer chromatography analysis of the intermediate metabolites of glyphosate degradation found that E. cloacae K7 had a C-P lyase activity and degraded glyphosate to give sarcosine, which was then oxidized to glycine. In addition, strain K7 colonized the roots of common sunflower (Helianthus annuus L.) and sugar sorghum (Sorghum saccharatum Pers.), promoting the growth and development of sunflower seedlings. Our findings extend current knowledge of glyphosate-degrading rhizosphere bacteria and may be useful for developing a biotechnology for the cleanup and restoration of glyphosate-polluted soils. PMID:23545355

  2. Optimization of technological conditions for one-pot synthesis of (S)-α-cyano-3-phenoxybenzyl acetate in organic media

    Institute of Scientific and Technical Information of China (English)

    ZHANG Ting-zhou; YANG Li-rong; ZHU Zi-qiang

    2005-01-01

    Optically active form of α-cyano-3-phenoxybenzyl (CPB) alcohol, building block of pyrethroid insecticides, was synthesized as its acetate by the combination of anion-exchange resin (D301)-catalyzed transcyanation between m-phenoxybenzaldehyde (m-PBA) and acetone cyanohydrin (AC), and lipase (from Alcaligenes sp.)-catalyzed enantioselective transesterification of the resulting cyanohydrin with vinyl acetate. Through optimizing technological conditions, the catalyzing efficiency was improved considerably compared to methods previously reported. Concentrations of CPB acetate were determined by gas chromatograph. The enantio excess (e.e.) values of CPB acetate were measured by NMR (nuclear magnetic resonance) method. Effects of solvents and temperatures on this reaction were studied. Cyclohexane was shown to be the best solvent among the three tested solvents. 55 ℃ was the optimal temperature for higher degree of conversion. External diffusion limitation was excluded by raising the rotational speed to 220 r/min. However, internal diffusion could not be ignored, since the catalyst (lipase) was an immobilized enzyme and its particle dimension was not made small enough. The reaction rate was substantially accelerated when the reactant (m-PBA) concentration was as high as 249 mmol/L, but decreased when the initial concentration of m-PBA reached to 277 mmol/L. It was also found that the catalyzing capability of recovered lipase was high enough to use several batches. Study of the mole ratio of AC to m-PBA showed that 2:1 was the best choice. The strategy of adding base catalyst D301 was found to be an important factor in improving the degree of conversion of the reaction from 20% to 80%. The highest degree of conversion of the reaction has reached up to 80%.

  3. Identification of nif genes in N2-fixing bacterial strains isolated from rice fields along the Yangtze River Plain.

    Science.gov (United States)

    Xie, Guang Hui; Cui, Zongjun; Yu, Jun; Yan, Jing; Hai, Weili; Steinberger, Yosef

    2006-01-01

    The aim of this research was to identify nifH and nifHDKYE ' genes in twenty strains of N2-fixing heterotrophic bacteria isolated from rice fields in the Yangtze River Plain. Southern hybridization of the total DNA from each strain was performed with the Klebsiella pneumoniae nifHDKYE ' gene probe (6.2 kb Eco RI fragment from pSA30) and the Azospirillum brasilense nifH gene probe (0.6 kb Eco RI-Hin dIII fragment from pHU8). We found that Eco RI fragments of total DNA from Aeromonas hydrophila HY2, Bacillus azotoformans FD, Bacillus licheniformis NCH1, NCH5, WH4, Bacillus brevis NC2, Bacillus pumilus NC12, Bacillus cereus NCH2, Citrobacter freundii HY5, HY9, Derxia gummosa HZ5, Pseudomonas mendocina HZ1 and Pseudomonas pseudoalcaligenes WH3 were positively hybridized with both of the probes. Agrobacterium radiobacter HY17, Corynebacterium sp. HY12, YZ and Pseudomonas sp. HY11 had Eco RI fragments hybridized with the K. pneumoniae nifHDKYE ' gene probe. An Eco RI fragment of total DNA from Bacillus megaterium YY4 was positively hybridized to the A. brasilense nifH gene probe. No hybridization sign was found in the total DNA fragments from Alcaligenes cupidus YY6 and Corynebacterium sp. NC11 hybridized with either of the gene probes. The data provide the number and size of EcoRI fragments of the total DNA hybridized with the nif gene probes for these strains of rarely studied species, suggesting additional evidence for N2 fixing and nif gene diversity of N2-fixing bacteria in rice fields along the Yangtze River Plain.

  4. Bacteria in crude oil survived autoclaving and stimulated differentially by exogenous bacteria.

    Science.gov (United States)

    Gong, Xiao-Cui; Liu, Ze-Shen; Guo, Peng; Chi, Chang-Qiao; Chen, Jian; Wang, Xing-Biao; Tang, Yue-Qin; Wu, Xiao-Lei; Liu, Chun-Zhong

    2012-01-01

    Autoclaving of crude oil is often used to evaluate the hydrocarbon-degrading abilities of bacteria. This may be potentially useful for bioaugmentation and microbial enhanced oil recovery (MEOR). However, it is not entirely clear if "endogenous" bacteria (e.g., spores) in/on crude oil survive the autoclaving process, or influence subsequent evaluation of the hydrocarbon-degradation abilities of the "exogenous" bacterial strains. To test this, we inoculated autoclaved crude oil medium with six exogenous bacterial strains (three Dietzia strains, two Acinetobacter strains, and one Pseudomonas strain). The survival of the spore-forming Bacillus and Paenibacillus and the non-spore-forming mesophilic Pseudomonas, Dietzia, Alcaligenes, and Microbacterium was detected using a 16S rRNA gene clone library and terminal restriction fragment length polymorphism (T-RFLP) analysis. However, neither bacteria nor bacterial activity was detected in three controls consisting of non-inoculated autoclaved crude oil medium. These results suggest that detection of endogenous bacteria was stimulated by the six inoculated strains. In addition, inoculation with Acinetobacter spp. stimulated detection of Bacillus, while inoculation with Dietzia spp. and Pseudomonas sp. stimulated the detection of more Pseudomonas. In contrast, similar exogenous bacteria stimulated similar endogenous bacteria at the genus level. Based on these results, special emphasis should be applied to evaluate the influence of bacteria capable of surviving autoclaving on the hydrocarbon-degrading abilities of exogenous bacteria, in particular, with regard to bioaugmentation and MEOR. Bioaugmentation and MEOR technologies could then be developed to more accurately direct the growth of specific endogenous bacteria that may then improve the efficiency of treatment or recovery of crude oil. PMID:23028421

  5. Identification of bacteria in drinking and purified water during the monitoring of a typical water purification system

    Directory of Open Access Journals (Sweden)

    Mazzola Priscila

    2002-08-01

    Full Text Available Abstract Background A typical purification system that provides purified water which meets ionic and organic chemical standards, must be protected from microbial proliferation to minimize cross-contamination for use in cleaning and preparations in pharmaceutical industries and in health environments. Methodology Samples of water were taken directly from the public distribution water tank at twelve different stages of a typical purification system were analyzed for the identification of isolated bacteria. Two miniature kits were used: (i identification system (api 20 NE, Bio-Mérieux for non-enteric and non-fermenting gram-negative rods; and (ii identification system (BBL crystal, Becton and Dickson for enteric and non-fermenting gram-negative rods. The efficiency of the chemical sanitizers used in the stages of the system, over the isolated and identified bacteria in the sampling water, was evaluated by the minimum inhibitory concentration (MIC method. Results The 78 isolated colonies were identified as the following bacteria genera: Pseudomonas, Flavobacterium and Acinetobacter. According to the miniature kits used in the identification, there was a prevalence of isolation of P. aeruginosa 32.05%, P. picketti (Ralstonia picketti 23.08%, P. vesiculares 12.82%,P. diminuta 11.54%, F. aureum 6.42%, P. fluorescens 5.13%, A. lwoffi 2.56%, P. putida 2.56%, P. alcaligenes 1.28%, P. paucimobilis 1.28%, and F. multivorum 1.28%. Conclusions We found that research was required for the identification of gram-negative non-fermenting bacteria, which were isolated from drinking water and water purification systems, since Pseudomonas genera represents opportunistic pathogens which disperse and adhere easily to surfaces, forming a biofilm which interferes with the cleaning and disinfection procedures in hospital and industrial environments.

  6. Biofuel Cells Select for Microbial Consortia That Self-Mediate Electron Transfer

    Science.gov (United States)

    Rabaey, Korneel; Boon, Nico; Siciliano, Steven D.; Verhaege, Marc; Verstraete, Willy

    2004-01-01

    Microbial fuel cells hold great promise as a sustainable biotechnological solution to future energy needs. Current efforts to improve the efficiency of such fuel cells are limited by the lack of knowledge about the microbial ecology of these systems. The purposes of this study were (i) to elucidate whether a bacterial community, either suspended or attached to an electrode, can evolve in a microbial fuel cell to bring about higher power output, and (ii) to identify species responsible for the electricity generation. Enrichment by repeated transfer of a bacterial consortium harvested from the anode compartment of a biofuel cell in which glucose was used increased the output from an initial level of 0.6 W m−2 of electrode surface to a maximal level of 4.31 W m−2 (664 mV, 30.9 mA) when plain graphite electrodes were used. This result was obtained with an average loading rate of 1 g of glucose liter−1 day−1 and corresponded to 81% efficiency for electron transfer from glucose to electricity. Cyclic voltammetry indicated that the enhanced microbial consortium had either membrane-bound or excreted redox components that were not initially detected in the community. Dominant species of the enhanced culture were identified by denaturing gradient gel electrophoresis and culturing. The community consisted mainly of facultative anaerobic bacteria, such as Alcaligenes faecalis and Enterococcus gallinarum, which are capable of hydrogen production. Pseudomonas aeruginosa and other Pseudomonas species were also isolated. For several isolates, electrochemical activity was mainly due to excreted redox mediators, and one of these mediators, pyocyanin produced by P. aeruginosa, could be characterized. Overall, the enrichment procedure, irrespective of whether only attached or suspended bacteria were examined, selected for organisms capable of mediating the electron transfer either by direct bacterial transfer or by excretion of redox components. PMID:15345423

  7. Avaliação da contaminação bacteriana em desinfetantes de uso domiciliar

    Directory of Open Access Journals (Sweden)

    Miyagi Fumie

    2000-01-01

    Full Text Available OBJETIVO: Avaliar desinfetantes de uso domiciliar, identificando a presença de bactérias contaminantes, e conhecer o nível de tolerância dessas bactérias ao cloreto de benzalcônio. MÉTODOS: Foram adquiridas aleatoriamente no comércio da região metropolitana de São Paulo, SP, Brasil, 52 amostras de desinfetantes de uso domiciliar para análise quanto à presença de bactérias contaminantes. O nível de tolerância dessas bactérias ao cloreto de benzalcônio foi determinado pelo método da macrodiluição em caldo. RESULTADOS: De 52 amostras, 16 (30,77% estavam contaminadas por bactérias Gram negativas, com contagens variando entre 10(4 e 10(6 UFC/ml. Esses contaminantes foram identificados como Alcaligenes xylosoxidans, Burkholderia cepacia e Serratia marcescens. As Concentrações Inibitórias Mínimas (CIM: mg/ml do cloreto de benzalcônio para S. marcescens, A. xylosoxidans e B. cepacia foram: 2,48, 1,23 e 0,30, respectivamente. CONCLUSÕES Os desinfetantes de uso domiciliar à base de compostos de amônio quaternário são passíveis de contaminação por bactérias. As CIM do cloreto de benzalcônio para as bactérias contaminantes estavam abaixo das concentrações do princípio ativo presente nos desinfetantes, indicando que a tolerância ao biocida não é estável, podendo ser perdida com o cultivo das bactérias em meios de cultura sem o biocida.

  8. Metagenomic analyses of alcohol induced pathogenic alterations in the intestinal microbiome and the effect of Lactobacillus rhamnosus GG treatment.

    Directory of Open Access Journals (Sweden)

    Lara Bull-Otterson

    Full Text Available Enteric dysbiosis plays an essential role in the pathogenesis of alcoholic liver disease (ALD. Detailed characterization of the alterations in the gut microbiome is needed for understanding their pathogenic role in ALD and developing effective therapeutic approaches using probiotic supplementation. Mice were fed liquid Lieber-DeCarli diet without or with alcohol (5% v/v for 6 weeks. A subset of mice were administered the probiotic Lactobacillus rhamnosus GG (LGG from 6 to 8 weeks. Indicators of intestinal permeability, hepatic steatosis, inflammation and injury were evaluated. Metagenomic analysis of the gut microbiome was performed by analyzing the fecal DNA by amplification of the V3-V5 regions of the 16S rRNA gene and large-scale parallel pyrosequencing on the 454 FLX Titanium platform. Chronic ethanol feeding caused a decline in the abundance of both Bacteriodetes and Firmicutes phyla, with a proportional increase in the gram negative Proteobacteria and gram positive Actinobacteria phyla; the bacterial genera that showed the biggest expansion were the gram negative alkaline tolerant Alcaligenes and gram positive Corynebacterium. Commensurate with the qualitative and quantitative alterations in the microbiome, ethanol caused an increase in plasma endotoxin, fecal pH, hepatic inflammation and injury. Notably, the ethanol-induced pathogenic changes in the microbiome and the liver were prevented by LGG supplementation. Overall, significant alterations in the gut microbiome over time occur in response to chronic alcohol exposure and correspond to increases in intestinal barrier dysfunction and development of ALD. Moreover, the altered bacterial communities of the gut may serve as significant therapeutic target for the prevention/treatment of chronic alcohol intake induced intestinal barrier dysfunction and liver disease.

  9. EFFICACY OF ENDOPHYTIC BACTERIA IN REDUCING PLANT PARASITIC NEMATODE Pratylenchus brachyurus

    Directory of Open Access Journals (Sweden)

    Rita Harni

    2014-04-01

    Full Text Available Pratylenchus brachyurus is a major parasitic nematode on patchouli that reduces plant production up to 85%. The use of endophytic bacteria is promising for controlling nematode and promoting plant growth through production of phytohormones and enhancing the availability of soil nutrients. The objective of the study was to evaluate the efficacy of endophytic bacteria to control P. brachyurus on patchouli plant and its influence on plant productions (plant fresh weight and patchouli oil. The study was conducted at Cimanggu Experimental Garden and Laboratory of the Indonesian Spice and Medicinal Crops Research Institute (ISMECRI, Bogor, West Java. The experi-ment was designed in a randomized block with seven treatments and eight replications; each replication consisted of 10 plants. The treatments evaluated were five isolates of endophytic bacteria (Achromobacter xylosoxidans TT2, Alcaligenes faecalis NJ16, Pseudomonas putida EH11, Bacillus cereus MSK and Bacillus subtilis NJ57, synthetic nematicide as a reference, and non-treated plant as a control.  Four-week old patchouli plants of cv. Sidikalang were treated by soaking the roots in suspension of endophytic bacteria (109 cfu  ml-1 for one hour before trans-planting to the field. At one month after planting, the plants were drenched with the bacterial suspension as much as 100 ml per plant. The results showed that applications of the endophytic bacteria could suppress the nematode populations (52.8-80% and increased plant weight (23.62-57.48% compared to the control. The isolate of endophytic bacterium Achromobacter xylosoxidans TT2 was the best and comparable with carbofuran.

  10. The treatment of gaseous benzene by two-phase partitioning bioreactors: a high performance alternative to the use of biofilters

    Energy Technology Data Exchange (ETDEWEB)

    Davidson, C.T.; Daugulis, A.J. [Dept. of Chemical Engineering, Queen' s Univ., Kingston, ON (Canada)

    2003-07-01

    A 2-1 (1-1 working volume) two-phase partitioning bioreactor (TPPB) was used as an integrated scrubber/bioreactor in which the removal and destruction of benzene from a gas stream was achieved by the reactor's organic/aqueous liquid contents. The organic solvent used to trap benzene was n-hexadecane, and degradation of benzene was achieved in the aqueous phase using the bacterium Alcaligenes xylosoxidans Y234. A gas stream with a benzene concentration of 340 mg l{sup -1} at a flow rate of 0.414 l h{sup -1} was delivered to the system at a loading capacity of 140 g m{sup -3} h{sup -1}, and an elimination capacity of 133 g m{sup -3} h{sup -1} was achieved (the volume in this term is the total liquid volume of the TPPB). This elimination capacity is between 3 and 13 times greater than any benzene elimination achieved by biofiltration, a competing biological air treatment strategy. It was also determined that the evaluation of TPPB performance in terms of elimination capacity should include the cell mass present in the system, as this is a readily controllable quantity. A specific benzene utilization rate of 0.57 g benzene (g cells){sup -1} h{sup -1} was experimentally determined in a bioreactor with a cell concentration that varied dynamically between 0.2 and 1 g l{sup -1}. If it assumed that this specific benzene utilization rate (0.57 g g{sup -1} h{sup -1}) is independent of cell concentration, then a TPPB operated at high cell concentrations could potentially achieve elimination capacities several hundred times greater than those obtained with biofilters. (orig.)

  11. Isolation and growth kinetics of a novel phenol-degrading bacterium Microbacterium oxydans from the sediment of Taihu Lake (China).

    Science.gov (United States)

    Wang, Linqiong; Li, Yi; Niu, Lihua; Dai, Yu; Wu, Yue; Wang, Qing

    2016-01-01

    Seven phylogenetically diverse phenol-degrading bacterial strains designated as P1 to P7 were isolated from the industry-effluent dump sites of an industrial area near Taihu Lake, China. Through the 16S rDNA sequence analysis, these strains were widely distributed among five different genera: Rhodococcus (P1), Pseudomonas (P2-P4), Acinetobacter (P5), Alcaligenes (P6), and Microbacterium (P7). All seven isolates were capable of growing with phenol as the sole carbon source. Strain P7 was found to be a novel phenol-degrading strain by detailed morphological, physiological and biochemical characteristic analysis as well as the 16S rDNA sequence analyses, and was named Microbacterium oxydans LY1 (M. oxydans LY1 in its short form). Degradation experiments of phenol at various initial concentrations (20-1,000 mg/L) revealed that phenol is an inhibitory substrate to M. oxydans LY1. In a batch culture experiment, more than 95% of the phenol (500 mg/L) was degraded by M. oxydans LY1 at 30°C, pH 7.0 and 120 rpm within 88 h. Phenol concentration higher than 200 mg/L was found to inhibit the bacterial growth. The growth kinetics correlated well with the Haldane model with μmax (maximum specific cell growth rate) = 0.243 h(-1), Ks (saturation constant) = 25.7 mg/L, and Ki (self-inhibition constant) = 156.3 mg/L. This is the first report of the ability of M. oxydans to degrade phenol, and the results could provide important information for bioremediation of phenol-contaminated environments.

  12. Anoxic Biodegradation of Isosaccharinic Acids at Alkaline pH by Natural Microbial Communities.

    Directory of Open Access Journals (Sweden)

    Simon P Rout

    Full Text Available One design concept for the long-term management of the UK's intermediate level radioactive wastes (ILW is disposal to a cementitious geological disposal facility (GDF. Under the alkaline (10.013.0 anoxic conditions expected within a GDF, cellulosic wastes will undergo chemical hydrolysis. The resulting cellulose degradation products (CDP are dominated by α- and β-isosaccharinic acids (ISA, which present an organic carbon source that may enable subsequent microbial colonisation of a GDF. Microcosms established from neutral, near-surface sediments demonstrated complete ISA degradation under methanogenic conditions up to pH 10.0. Degradation decreased as pH increased, with β-ISA fermentation more heavily influenced than α-ISA. This reduction in degradation rate was accompanied by a shift in microbial population away from organisms related to Clostridium sporosphaeroides to a more diverse Clostridial community. The increase in pH to 10.0 saw an increase in detection of Alcaligenes aquatilis and a dominance of hydrogenotrophic methanogens within the Archaeal population. Methane was generated up to pH 10.0 with acetate accumulation at higher pH values reflecting a reduced detection of acetoclastic methanogens. An increase in pH to 11.0 resulted in the accumulation of ISA, the absence of methanogenesis and the loss of biomass from the system. This study is the first to demonstrate methanogenesis from ISA by near surface microbial communities not previously exposed to these compounds up to and including pH 10.0.

  13. Evaluation of microorganisms cultured from injured and repressed tissue regeneration sites in endangered giant aquatic Ozark Hellbender salamanders.

    Directory of Open Access Journals (Sweden)

    Cheryl A Nickerson

    Full Text Available Investigation into the causes underlying the rapid, global amphibian decline provides critical insight into the effects of changing ecosystems. Hypothesized and confirmed links between amphibian declines, disease, and environmental changes are increasingly represented in published literature. However, there are few long-term amphibian studies that include data on population size, abnormality/injury rates, disease, and habitat variables to adequately assess changes through time. We cultured and identified microorganisms isolated from abnormal/injured and repressed tissue regeneration sites of the endangered Ozark Hellbender, Cryptobranchus alleganiensis bishopi, to discover potential causative agents responsible for their significant decline in health and population. This organism and our study site were chosen because the population and habitat of C. a. bishopi have been intensively studied from 1969-2009, and the abnormality/injury rate and apparent lack of regeneration were established. Although many bacterial and fungal isolates recovered were common environmental organisms, several opportunistic pathogens were identified in association with only the injured tissues of C.a. bishopi. Bacterial isolates included Aeromonas hydrophila, a known amphibian pathogen, Granulicetella adiacens, Gordonai terrae, Stenotrophomonas maltophilia, Aerococcus viridans, Streptococcus pneumoniae and a variety of Pseudomonads, including Pseudomonas aeruginosa, P. stutzeri, and P. alcaligenes. Fungal isolates included species in the genera Penicillium, Acremonium, Cladosporium, Curvularia, Fusarium, Streptomycetes, and the Class Hyphomycetes. Many of the opportunistic pathogens identified are known to form biofilms. Lack of isolation of the same organism from all wounds suggests that the etiological agent responsible for the damage to C. a. bishopi may not be a single organism. To our knowledge, this is the first study to profile the external microbial consortia

  14. Solvent-Free Lipase-Catalyzed Synthesis of Diacylgycerols as Low-Calorie Food Ingredients

    Science.gov (United States)

    Vázquez, Luis; González, Noemí; Reglero, Guillermo; Torres, Carlos

    2016-01-01

    Problems derived from obesity and overweight have recently promoted the development of fat substitutes and other low-calorie foods. On the one hand, fats with short- and medium-chain fatty acids are a source of quick energy, easily hydrolyzable and hardly stored as fat. Furthermore, 1,3-diacylglycerols are not hydrolyzed to 2-monoacylglycerols in the gastrointestinal tract, reducing the formation of chylomicron and lowers the serum level of triacylglycerols by decreasing its resynthesis in the enterocyte. In this work, these two effects were combined to synthesize short- and medium-chain 1,3-diacylglycerols, leading to a product with great potential as for their low-calorie properties. Lipase-catalyzed transesterification reactions were performed between short- and medium-chain fatty acid ethyl esters and glycerol. Different variables were investigated, such as the type of biocatalyst, the molar ratio FAEE:glycerol, the adsorption of glycerol on silica gel, or the addition of lecithin. Best reaction conditions were evaluated considering the percentage of 1,3-DAG produced and the reaction rate. Except Novozym 435 (Candida antarctica), other lipases required the adsorption of glycerol on silica gel to form acylglycerols. Lipases that gave the best results with adsorption were Novozym 435 and Lipozyme RM IM (Rhizomucor miehei) with 52 and 60.7% DAG at 32 h, respectively. Because of its specificity for sn-1 and sn-3 positions, lipases leading to a higher proportion of 1,3-DAG vs. 1,2-DAG were Lipozyme RM IM (39.8 and 20.9%, respectively) and Lipase PLG (Alcaligenes sp.) (35.9 and 19.3%, respectively). By adding 1% (w/w) of lecithin to the reaction with Novozym 435 and raw glycerol, the reaction rate was considerably increased from 41.7 to 52.8% DAG at 24 h. PMID:26904539

  15. Microbial liquefaction of peat for the production of synthetic fuels

    Energy Technology Data Exchange (ETDEWEB)

    Gunasekaran, M.

    1988-01-01

    Objectives of this study were: to evaluate the potential of using various microorganisms to hydrolyse and liquify peat; to determine the optimal conditions for peat hydrolysis and liquefaction; to study the co-metabolizable substances; to separate the compounds present in liquified peat by alumina and silica acid chromatography and capillary gas chromatography; and to identify the compounds in liquified peat by capillary GC-Mass spectrometry. Organisms used in the study include: Coprinus comatus, Coriolus hirsutus, Ganoderma lucidum, Lentinus edodes, Lenzites trabea, Phanerochaete chrysosporium, Pleurotus ostreatus, P. sapidus, Polyporus adjustus, Neurospora sitophila, Rhizophus arrhizus, Bacillus subtilis, Acinetobacter sp. and Alcaligenes sp. The fungi were maintained and cultivated in potato dextrose agar at 30 C. The bacteria were maintained in nutrient agar at 30 C. We have also initiated work on coal solubilization in addition to the studies on peat liquefaction. A relatively new substratum or semi-solid base for culture media called Pluronic F-127, or Polyol (BASF, New Jersey). Objectives of this study were: (1) to study the growth patterns of Candida ML 13 on pluronic as substratum; (2) to determine the rate of microbial coal solubilization on pluronic F-127 amended in different growth media; (3) to separate the mycelial mat of Candida ML 13 from unsolubilized coal particles and solubilized coal products from pluronic F-127; (4) to determine the effects of pH on microbial coal solubilization in pluronic F-127 media; (5) the effect of concentration of pluronic F-127 in media on coal solubilization; and, (6) to study the role of extracellular factors secreted by Candida ML 13 on coal solubilization in pluronic F-127 media. Results are discussed. 4 refs.

  16. PCR typing of genetic determinants for metallo-beta-lactamases and integrases carried by gram-negative bacteria isolated in Japan, with focus on the class 3 integron.

    Science.gov (United States)

    Shibata, Naohiro; Doi, Yohei; Yamane, Kunikazu; Yagi, Tetsuya; Kurokawa, Hiroshi; Shibayama, Keigo; Kato, Haru; Kai, Kumiko; Arakawa, Yoshichika

    2003-12-01

    From January 2001 to December 2002, 587 strains of gram-negative bacterial isolates demonstrating resistance to ceftazidime and a combination of sulbactam and cefoperazone were subjected to a disk diffusion screening test using sodium mercaptoacetic acid; 431 strains (73.4%) appeared to produce metallo-beta-lactamase (MBL). Of these 431 strains, 357 were found by PCR to carry genes for IMP-1 type MBL (bla(IMP-1)), while only 7 and 67 strains carried the IMP-2 gene (bla(IMP-2)) and the VIM-2 gene (bla(VIM-2)), respectively. Neither VIM-1 nor SPM-1 type MBL genes were found among the strains tested. Of 431 strains, 427 carried the intI1 gene, and 4 strains carrying both the intI1 and intI3 genes were reidentified as Pseudomonas putida harboring bla(IMP-1). Of these four P. putida strains, three strains and one strain, respectively, were separately isolated from two hospitals located in the same prefecture, and the three strains showed very similar pulsed-field gel electrophoresis patterns. Of 357 bla(IMP-1) carriers, 116, 53, 51, 47, and 30 strains were identified as Pseudomonas aeruginosa, Alcaligenes xylosoxidans, P. putida/fluorescens, Serratia marcescens, and Acinetobacter baumannii, respectively. Four strains carrying bla(IMP-2) were reidentified as P. putida. Sixty-three P. aeruginosa strains and four P. putida strains carried bla(VIM-2). Of 427 intI1-positive strains, 180, 53, 51, 47, and 35 were identified as P. aeruginosa, A. xylosoxidans, P. putida/fluorescens, S. marcescens, and A. baumannii, respectively. In the present study, it was confirmed that strains carrying bla(IMP-1) with a class 1 integron are the most prevalent type in Japan, although several intI3 carriers have also been identified sporadically in this country. PMID:14662918

  17. Characterization of Co(III) EDTA-Reducing Bacteria in Metal- and Radionuclide-Contaminated Groundwater

    Energy Technology Data Exchange (ETDEWEB)

    Gao, Weimin [Arizona State University; Gentry, Terry J [ORNL; Mehlhorn, Tonia L [ORNL; Carroll, Sue L [ORNL; Jardine, Philip M [ORNL; Zhou, Jizhong [University of Oklahoma, Norman

    2010-01-01

    The Waste Area Grouping 5 (WAG5) site at Oak Ridge National Laboratory has a potential to be a field site for evaluating the effectiveness of various bioremediation approaches and strategies. The site has been well studied in terms of its geological and geochemical properties over the past decade. However, despite the importance of microorganisms in bioremediation processes, the microbiological populations at the WAG5 site and their potential in bioremediation have not been similarly evaluated. In this study, we initiated research to characterize the microbial populations in WAG5 groundwater. Approximately 100 isolates from WAG5 groundwater were isolated and selected based on colony morphology. Fifty-five unique isolates were identified by BOX-PCR and subjected to further characterization. 16S rRNA sequences indicated that these isolates belong to seventeen bacterial genera including Alcaligenes (1 isolate), Aquamonas (1), Aquaspirillum (1), Bacillus (10), Brevundimonas (5), Caulobacter (7), Dechloromonas (2), Janibacter (1), Janthinobacterium (2), Lactobacillus (1), Paenibacillus (4), Pseudomonas (9), Rhodoferax (1), Sphingomonas (1), Stenotrophomonas (6), Variovorax (2), and Zoogloea (1). Metal respiration assays identified several isolates, which phylogenically belong or are close to Caulobacter, Stenotrophomonas, Bacillus, Paenibacillus and Pseudomonas, capable of reducing Co(III)EDTA- to Co(II)EDTA{sup 2-} using the defined M1 medium under anaerobic conditions. In addition, using WAG5 groundwater directly as the inoculants, we found that organisms associated with WAG5 groundwater can reduce both Fe(III) and Co(III) under anaerobic conditions. Further assays were then performed to determine the optimal conditions for Co(III) reduction. These assays indicated that addition of various electron donors including ethanol, lactate, methanol, pyruvate, and acetate resulted in metal reduction. These experiments will provide useful background information for future

  18. Imidase catalyzing desymmetric imide hydrolysis forming optically active 3-substituted glutaric acid monoamides for the synthesis of gamma-aminobutyric acid (GABA) analogs.

    Science.gov (United States)

    Nojiri, Masutoshi; Hibi, Makoto; Shizawa, Hiroaki; Horinouchi, Nobuyuki; Yasohara, Yoshihiko; Takahashi, Satomi; Ogawa, Jun

    2015-12-01

    The recent use of optically active 3-substituted gamma-aminobutyric acid (GABA) analogs in human therapeutics has identified a need for an efficient, stereoselective method of their synthesis. Here, bacterial strains were screened for enzymes capable of stereospecific hydrolysis of 3-substituted glutarimides to generate (R)-3-substituted glutaric acid monoamides. The bacteria Alcaligenes faecalis NBRC13111 and Burkholderia phytofirmans DSM17436 were discovered to hydrolyze 3-(4-chlorophenyl) glutarimide (CGI) to (R)-3-(4-chlorophenyl) glutaric acid monoamide (CGM) with 98.1% enantiomeric excess (e.e.) and 97.5% e.e., respectively. B. phytofirmans DSM17436 could also hydrolyze 3-isobutyl glutarimide (IBI) to produce (R)-3-isobutyl glutaric acid monoamide (IBM) with 94.9% e.e. BpIH, an imidase, was purified from B. phytofirmans DSM17436 and found to generate (R)-CGM from CGI with specific activity of 0.95 U/mg. The amino acid sequence of BpIH had a 75% sequence identity to that of allantoinase from A. faecalis NBRC13111 (AfIH). The purified recombinant BpIH and AfIH catalyzed (R)-selective hydrolysis of CGI and IBI. In addition, a preliminary investigation of the enzymatic properties of BpIH and AfIH revealed that both enzymes were stable in the range of pH 6-10, with an optimal pH of 9.0, stable at temperatures below 40 °C, and were not metalloproteins. These results indicate that the use of this class of hydrolase to generate optically active 3-substituted glutaric acid monoamide could simplify the production of specific chiral GABA analogs for drug therapeutics.

  19. Bacterial Colonization of Cod (Gadus morhua L.) and Halibut (Hippoglossus hippoglossus) Eggs in Marine Aquaculture

    Science.gov (United States)

    Hansen, Geir Høvik; Olafsen, Jan A.

    1989-01-01

    Aquaculture has brought about increased interest in mass production of marine fish larvae. Problems such as poor egg quality and mass mortality of fish larvae have been prevalent. The intensive incubation techniques that often result in bacterial overgrowth on fish eggs could affect the commensal relationship between the indigenous microflora and opportunistic pathogens and subsequently hamper egg development, hatching, larval health, and ongrowth. Little information about the adherent microflora on fish eggs is available, and the present study was undertaken to describe the microbial ecology during egg development and hatching of two fish species of potential commercial importance in marine aquaculture. Attachment and development of the bacterial flora on cod (Gadus morhua L.) eggs from fertilization until hatching was studied by scanning electron microscopy. The adherent microflora on cod (G. morhua L.) and halibut (Hippoglossus hippoglossus) eggs during incubation was characterized and grouped by cluster analysis. Marked bacterial growth could be demonstrated 2 h after fertilization, and at hatching eggs were heavily overgrown. Members of the genera Pseudomonas, Alteromonas, Aeromonas, and Flavobacterium were found to dominate on the surface of both cod and halibut eggs. The filamentous bacterium Leucothrix mucor was found on eggs from both species. While growth of L. mucor on halibut eggs was sparse, cod eggs with a hairy appearance due to overgrowth by this bacterium close to hatching were frequently observed. Vibrio fischeri could be detected on cod eggs only, and pathogenic vibrios were not detected. Members of the genera Moraxella and Alcaligenes were found only on halibut eggs. Caulobacter and Seliberia spp. were observed attached to eggs dissected from cod ovaries under sterile conditions, indicating the presence of these bacteria in ovaries before spawning. Adherent strains did not demonstrate antibiotic resistance above a normal level. Attempts to

  20. Degradation of 2,6-di-tert-butylphenol by an isolated high-efficiency bacterium strain

    Institute of Scientific and Technical Information of China (English)

    ZHANG Ya-lei; FANG Zhen-wei; XU De-qiang; XIAO Yi-ping; ZHAO Jian-fu; QIANG Zhi-min

    2005-01-01

    An aerobic bacterium strain, F-3-4, capable of effectively degrading 2,6-di-tert-butylphenol (2, 6-DTBP), was isolated and screened out from an acrylic fiber wastewater and the biofilm in the wastewater treatment facilities. This strain was identified as Alcaligenes sp. through morphological, physiological and biochemical examinations. After cultivation, the strain was enhanced by 26.3% in its degradation capacity for 2,6-DTBP. Results indicated that the strain was able to utilize 2,6-DTBP, lysine, lactamine, citrate, n-utenedioic acid and maiic acid as the sole carbon and energy source, alkalinize acetamide, asparagine, L-histidine, acetate, citrate and propionate,but failed to utilize glucose, D-fructose, D-seminose, D-xylose, serine and phenylalanine as the sole carbon and energy source. The optimal growth conditions were determined to be: temperature 37 ℃, pH 7.0, inoculum size 0.1% and shaker rotary speed 250 r/min.Under the optimal conditions, the degradation kinetics of 2,6-DTBP with an initial concentration of 100 mg/L was studied. Results indicated that 62.4% of 2,6-DTBP was removed after 11 d. The degradation kinetics could be expressed by Eckenfelder equation with a half life of 9.38 d. In addition, the initial concentration of 2,6-DTBP played an important role on the degradation ability of the strain. The maximum initial concentration of 2,6-DTBP was determined to be 200 mg/L. Above this level, the strain was overloaded and exhibited significant inhibition.

  1. 土壤中砷氧化菌的生理生化及转化砷特性研究%Arsenite Transformation Characteristics and Molecular Identification of Arsenic-oxidizing Bacteria Isolated from Soil

    Institute of Scientific and Technical Information of China (English)

    宋卫锋; 罗丽丽; 林梓河; 严明; 邓琪; 莫于婷

    2011-01-01

    [目的]通过外加砷源驯化肇庆市鼎湖山自然保护区土壤中细菌,研究砷氧化菌的生理生化及转化砷特性.[方法]采用富集、稀释平板、硝酸盐漫过、生理生化指标的测定等.[结果]从中分离、鉴定出具有氧化砷功能的产碱杆菌和土壤杆菌2种菌株.[结论]这2种菌株最适氧化砷温度为30℃,最适氧化砷pH为9.培养基中乳酸钠浓度对菌株氧化砷有一定的影响.%[ Objective ] Through domesticated bacteria from the applied arsenic source soil in Dinghushan Nature Reserve of Zhaoqing City,physiological,biochemical and transformation characteristics of arsenic oxide bacteria were studied. [ Method]The methods of concentration,plates serial dilution, silver nitrate overflowed, physiological characteristic were adopted. [ Result ] They were identified as alcaligenes castellani and agrobacterium conn respectively, which were able to oxidize arsenite ( As (Ⅲ) ) into arsenate ( As (Ⅴ) ). [ Conclusion ] The optimal temperature and pH were 30 ℃ and 9 respectively for two bacterial strains. In addition,sodium Lactate medium concentration had a certain impact to arsenicoxidizing.

  2. Production of bioplastics and hydrogen gas by photosynthetic microorganisms

    Science.gov (United States)

    Yasuo, Asada; Masato, Miyake; Jun, Miyake

    1998-03-01

    Our efforts have been aimed at the technological basis of photosynthetic-microbial production of materials and an energy carrier. We report here accumulation of poly-(3-hydroxybutyrate) (PHB), a raw material of biodegradable plastics and for production of hydrogen gas, and a renewable energy carrier by photosynthetic microorganisms (tentatively defined as cyanobacteria plus photosynthetic bateria, in this report). A thermophilic cyanobacterium, Synechococcus sp. MA19 that accumulates PHB at more than 20% of cell dry wt under nitrogen-starved conditions was isolated and microbiologically identified. The mechanism of PHB accumulation was studied. A mesophilic Synechococcus PCC7942 was transformed with the genes encoding PHB-synthesizing enzymes from Alcaligenes eutrophus. The transformant accumulated PHB under nitrogen-starved conditions. The optimal conditions for PHB accumulation by a photosynthetic bacterium grown on acetate were studied. Hydrogen production by photosynthetic microorganisms was studied. Cyanobacteria can produce hydrogen gas by nitrogenase or hydrogenase. Hydrogen production mediated by native hydrogenase in cyanobacteria was revealed to be in the dark anaerobic degradation of intracellular glycogen. A new system for light-dependent hydrogen production was targeted. In vitro and in vivo coupling of cyanobacterial ferredoxin with a heterologous hydrogenase was shown to produce hydrogen under light conditions. A trial for genetic trasformation of Synechococcus PCC7942 with the hydrogenase gene from Clostridium pasteurianum is going on. The strong hydrogen producers among photosynthetic bacteria were isolated and characterized. Co-culture of Rhodobacter and Clostriumdium was applied to produce hydrogen from glucose. Conversely in the case of cyanobacteria, genetic regulation of photosynthetic proteins was intended to improve conversion efficiency in hydrogen production by the photosynthetic bacterium, Rhodobacter sphaeroides RV. A mutant acquired by

  3. On-line optical and X-ray spectroscopies with crystallography: an integrated approach for determining metalloprotein structures in functionally well defined states.

    Science.gov (United States)

    Ellis, Mark J; Buffey, Steven G; Hough, Michael A; Hasnain, S Samar

    2008-09-01

    X-ray-induced redox changes can lead to incorrect assignments of the functional states of metals in metalloprotein crystals. The need for on-line monitoring of the status of metal ions (and other chromophores) during protein crystallography experiments is of growing importance with the use of intense synchrotron X-ray beams. Significant efforts are therefore being made worldwide to combine different spectroscopies in parallel with X-ray crystallographic data collection. Here the implementation and utilization of optical and X-ray absorption spectroscopies on the modern macromolecular crystallography (MX) beamline 10, at the SRS, Daresbury Laboratory, is described. This beamline is equipped with a dedicated monolithic energy-dispersive X-ray fluorescence detector, allowing X-ray absorption spectroscopy (XAS) measurements to be made in situ on the same crystal used to record the diffraction data. In addition, an optical microspectrophotometer has been incorporated on the beamline, thus facilitating combined MX, XAS and optical spectroscopic measurements. By uniting these techniques it is also possible to monitor the status of optically active and optically silent metal centres present in a crystal at the same time. This unique capability has been applied to observe the results of crystallographic data collection on crystals of nitrite reductase from Alcaligenes xylosoxidans, which contains both type-1 and type-2 Cu centres. It is found that the type-1 Cu centre photoreduces quickly, resulting in the loss of the 595 nm peak in the optical spectrum, while the type-2 Cu centre remains in the oxidized state over a much longer time period, for which independent confirmation is provided by XAS data as this centre has an optical spectrum which is barely detectable using microspectrophotometry. This example clearly demonstrates the importance of using two on-line methods, spectroscopy and XAS, for identifying well defined redox states of metalloproteins during

  4. Bacterial phylogenetic diversity in a constructed wetland system treating acid coal mine drainage

    Energy Technology Data Exchange (ETDEWEB)

    Nicorarat, D.; Dick, W.A.; Dopson, M.; Tuovinen, O.H. [Ohio State University, Columbus, OH (USA)

    2008-02-15

    Microorganisms in acid mine drainage are typically acidophiles that mediate the oxidation of reduced compounds of iron and sulfur. However, microbial populations in wetland systems constructed to treat acid mine drainage are not well characterized. This study was to analyze bacterial diversity, using cultivation-independent molecular ecological techniques, in a constructed wetland that received acid drainage from an abandoned underground coal mine. DNA was purified from Fe(III)-precipitates from the oxidized surface zone of wetland sediments and 16S rRNA gene sequences were amplified and cloned. A total of 200 clones were analyzed by restriction fragment length polymorphism (RFLP) and 77 unique RFLP patterns were obtained with four restriction enzymes. Of these patterns, 30 most dominant unique clones were selected for sequencing of their 16S rRNA genes. Half of these 30 clones could be matched with autotrophic iron- and sulfur-oxidizing bacteria (Acidithiohacillus ferrooxidans and Acidithiobacillus thiooxidans). Several clones also formed a clade with heterotrophic iron-oxidizing bacteria (TRA2-10, TRA3-20, and TRA5-3) and heterotrophic bacteria (Stenotrophomas maltophilia, Bordetella spp., Alcalgenes sp., Alcaligenesfaecalis, and Alcaligenes xylosoxidans). Approximately 40% and 35% of the analyzed RFLP restriction patterns were consistent with A. ferrooxidans and A. thiooxidans, respectively. The relatively high frequency of acidithiobacilli is consistent with the chemical and physical characteristics of this site i.e., continuous, abundant supply of reduced iron and sulfur compounds, pH 3-4, ambient temperature, and limited organics originating from the coal seam and from vegetation or soil surrounding the inlet channel to the wetland.

  5. Assessment of the microbial community in a constructed wetland that receives acid coal mine drainage

    Energy Technology Data Exchange (ETDEWEB)

    Nicomrat, D.; Dick, W.A.; Tuovinen, O.H. [Ohio State University, Columbus, OH (United States)

    2006-01-15

    Constructed wetlands are used to treat acid drainage from surface or underground coal mines. However, little is known about the microbial communities in the receiving wetland cells. The purpose of this work was to characterize the microbial population present in a wetland that was receiving acid coal mine drainage (AMD). Samples were collected from the oxic sediment zone of a constructed wetland cell in southeastern Ohio that was treating acid drainage from an underground coal mine seep. Samples comprised Fe(Ill) precipitates and were pretreated with ammonium oxalate to remove interfering iron, and the DNA was extracted and purified by agarose gel electrophoresis prior to amplification of portions of the 16S rRNA gene. Amplified products were separated by denaturing gradient gel electrophoresis and DNA from seven distinct bands was excised from the gel and sequenced. The sequences were matched to sequences in the GenBank bacterial 16S rDNA database. The DNA in two of the bands yielded matches with Acidithiobacillus ferrooxidans and the DNA in each of the remaining five bands was consistent with one of the following microorganisms: Acidithiobacillus thiooxidans, strain TRA3-20 (a eubacterium), strain BEN-4 (an arsenite-oxidizing bacterium), an Alcaligenes sp., and a Bordetella sp. Low bacterial diversity in these samples reflects the highly inorganic nature of the oxic sediment layer where high abundance of iron- and sulfur-oxidizing bacteria would be expected. The results we obtained by molecular methods supported our findings, obtained using culture methods, that the dominant microbial species in an acid receiving, oxic wetland are A. thiooxidans and A. ferrooxidans.

  6. Community of thermoacidophilic and arsenic resistant microorganisms isolated from a deep profile of mine heaps.

    Science.gov (United States)

    Casas-Flores, S; Gómez-Rodríguez, E Y; García-Meza, J V

    2015-12-01

    Soluble arsenic (As) in acidic feed solution may inhibit the copper (Cu) bioleaching process within mine heaps. To clarify the effect of soluble arsenic on the live biomass and bioxidative activity in heaps, toxicological assays were performed using a synthetic feed solution given by a mine company. The microorganisms had previously been isolated from two heap samples at up to 66 m depth, and cultured using specific media for chemolithotrophic acidophiles (pH 1-2) and moderate thermophiles (48°C), for arsenic tolerance assay. The four media with the highest biomass were selected to assay As-resistance; one culture (Q63h) was chosen to assay biooxidative activity, using a heap sample that contained chalcopyrite and covellite. We found that 0.5 g/L of As does not affect living biomass or biooxidative activity on Cu sulfides, but it dissolves Cu, while As precipitates as arsenic acid (H3AsO4·½H2O). The arsenic tolerant community, as identified by 16S rDNA gene sequence analysis, was composed of three main metabolic groups: chemolithotrophs (Leptospirillum, Sulfobacillus); chemolithoheterotrophs and organoheterotrophs as Acidovorax temperans, Pseudomonas alcaligenes, P. mendocina and Sphingomonas spp. Leptospirillum spp. and S. thermosulfidooxidans were the dominant taxa in the Q63-66 cultures from the deepest sample of the oldest, highest-temperature heap. The results indicated arsenic resistance in the microbial community, therefore specific primers were used to amplify ars (arsenic resistance system), aio (arsenite oxidase), or arr (arsenate respiratory reduction) genes from total sample DNA. Presence of arsB genes in S. thermosulfidooxidans in the Q63-66 cultures permits H3AsO4-As(V) detoxification and strengthens the community's response to As. PMID:26283066

  7. Structure of azurin from Achromobacter xylosoxidans NCIB11015 at 2.5 A resolution.

    Science.gov (United States)

    Inoue, T; Shibata, N; Nakanishi, H; Koyama, S; Ishii, H; Kai, Y; Harada, S; Kasai, N; Ohshiro, Y; Suzuki, S

    1994-12-01

    The crystal structure of azurin from a denitrifying bacterium, Achromobacter xylosoxidans NCIB11015, has been refined at 2.5 A resolution using diffraction data obtained by means of synchrotron radiation at KEK. Crystals suitable for X-ray experiment were obtained by the macro-seeding method and an intensity data were obtained on imaging plates mounted on a Weissenberg camera (Rmerge = 0.09). The initial model was obtained by the molecular replacement method using the structure of azurin from Alcaligenes denitrificans NCTC8582 as a starting model. The structure was refined by molecular dynamics optimization and the restrained least-squares method to a crystallographic R-value of 0.205. However, the current model gave an electron-density of the side-chain regions of several residues close to the N-terminus quite different from those expected from the amino acid sequences reported. Very recently, two kinds of azurins (Az-I and Az-II) were isolated from this bacterium by a slightly modified purification method and have been characterized and found to have different CD spectra. On analysis of amino acid sequences around the N-terminus, the second azurin (Az-II) was proved to be a new type of azurin in this bacterium. It was consequently revealed that the current model corresponds to a new type of azurin because of the complete agreement between the electron-density and the amino acid sequence of the newly determined 20 residues from the N-terminus. Determination of the whole amino acid sequence of this azurin and further refinement are in progress.

  8. Avaliação da contaminação bacteriana em desinfetantes de uso domiciliar

    Directory of Open Access Journals (Sweden)

    Fumie Miyagi

    2000-10-01

    Full Text Available OBJETIVO: Avaliar desinfetantes de uso domiciliar, identificando a presença de bactérias contaminantes, e conhecer o nível de tolerância dessas bactérias ao cloreto de benzalcônio. MÉTODOS: Foram adquiridas aleatoriamente no comércio da região metropolitana de São Paulo, SP, Brasil, 52 amostras de desinfetantes de uso domiciliar para análise quanto à presença de bactérias contaminantes. O nível de tolerância dessas bactérias ao cloreto de benzalcônio foi determinado pelo método da macrodiluição em caldo. RESULTADOS: De 52 amostras, 16 (30,77% estavam contaminadas por bactérias Gram negativas, com contagens variando entre 10(4 e 10(6 UFC/ml. Esses contaminantes foram identificados como Alcaligenes xylosoxidans, Burkholderia cepacia e Serratia marcescens. As Concentrações Inibitórias Mínimas (CIM: mg/ml do cloreto de benzalcônio para S. marcescens, A. xylosoxidans e B. cepacia foram: 2,48, 1,23 e 0,30, respectivamente. CONCLUSÕES Os desinfetantes de uso domiciliar à base de compostos de amônio quaternário são passíveis de contaminação por bactérias. As CIM do cloreto de benzalcônio para as bactérias contaminantes estavam abaixo das concentrações do princípio ativo presente nos desinfetantes, indicando que a tolerância ao biocida não é estável, podendo ser perdida com o cultivo das bactérias em meios de cultura sem o biocida.

  9. Runoff rates and ecotoxicity of zinc induced by atmospheric corrosion.

    Science.gov (United States)

    Karlén, C; Wallinde, I O; Heijerick, D; Leygraf, C; Janssen, C R

    2001-09-28

    Initiated by regulatory restrictions on the use of zinc for various building and construction applications, together with a lack of knowledge related to the release of zinc induced by atmospheric corrosion, a major interdisciplinary research project was implemented to generate data to be used in future risk assessment. Runoff rates from a large number of commercially available zinc-based materials have been determined on panels inclined 45 degrees from the horizon, facing south, during a 1-year atmospheric exposure in an urban environment in Sweden. Possible environmental effects of runoff water immediately after leaving the surface of the various materials have been evaluated during two different sampling periods of varying season and zinc concentration, using the standard growth inhibition test with algae. Raphidocelis subcapitata (formerly Selenastrum capricornutum). Zinc-specific biosensors with the bacterial strain of Alcaligenes eutrophus, and computer modeling using the water-ligand model MINTEQA2 and the humic aquatic model WHAM, have been used to assess the bioavailability and chemical speciation of zinc in the runoff water. An excellent consistency between the different methods was observed. The results show considerably lower runoff rates of zinc (0.07-3.5 g m(-2) year(-1)) than previously being used for regulatory restrictions, and the concentration of zinc to be predominantly responsible for the observed toxicity of the runoff water towards the green algae. The majority of the released zinc quantity was found to be present as free hydrated zinc ions and, hence, bioavailable. The data do not consider changes in bioavailability and chemical speciation or dilution effects during entry into the environment, and should therefore only be used as an initial assessment of the potential environmental effect of zinc runoff from building applications. This interdisciplinary approach has the potential for studies on the environmental fate of zinc in soil or

  10. Radiation application for upgrading of bioresources - Development of antifungal and/or nitrogen fixative microbes

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Ki Sung; Ko, Dong Kyu; Han, Gab Jin [Paichai University, Taejon (Korea)

    2000-04-01

    (1) In this study, the antifungal bacteria six strains were isolated from various environment located in Chung-cheong area, Korea. These isolates were identified the genera Bacillus sp, Pseudomonas sp. through morphological, physiological and biochemical analysis. Strains KL3362 and KL3397 were identified as Pseudomonas aurantiaca and Alcaligenes faecalis, respectively. Considering antifungal(AF) spectrum, strain KL3303, 3334, and 3341 show the broad range, KL3362 and KL3397 the narrow range of AF activity on a number of pathogenic fungi. Therefore, strains KL3341 and KL3362 were selected as the strong candidate of antifungal bacteria on every purpose and usage related with our research goal. (2) KL3341 producing-antifungal substances were consisted of five different kinds of low molecular weight polypeptides (3) Optimal conditions for the production of antifungal substances were analyzed under various environmental conditions. Growth rates were different according to carbon and nitrogen source, antifungal substance production yields were not different, however. Product of antifungal substances according t phosphate is proportional to the concentration. And productivity of antifungal substances was generally high in the range 30 {approx} 37 deg. C at pH 7. In case of adding vitamin B1 or lysine to medium, the antifungal activity was enhanced. (4) Mutants with enhanced antifungal activities were constructed by radiation of {gamma}-ray. (5) AF strains were screened and selected from this research can be used in the microbial biocides as well as multifunctional bio-controllers in order to remove plant pathogenic fungi and to clarify the polluted environment. Due to their excellent degradation capability for agricultural and/or organic substances, they also can be used to improve soil quality, to ferment compost and to clean up the environment. 35 refs., 17 figs., 15 tabs. (Author)

  11. ENTEROPATHOGENS DETECTED IN A DAYCARE CENTER, SOUTHEASTERN BRAZIL: BACTERIA, VIRUS, AND PARASITE RESEARCH

    Directory of Open Access Journals (Sweden)

    Edna Donizetti Rossi Castro

    2015-02-01

    Full Text Available Introduction: The objective of this study was to determine the prevalence and etiological profile of enteropathogens in children from a daycare center. Methods: From October 2010 to February 2011 stool samples from 100 children enrolled in a government daycare center in the municipality of São José do Rio Preto, in the state of São Paulo, were collected and analyzed. Results: A total of 246 bacteria were isolated in 99% of the fecal samples; 129 were in the diarrheal group and 117 in the non-diarrheal group. Seventy-three strains of Escherichia coli were isolated, 19 of Enterobacter, one of Alcaligenes and one of Proteus. There were 14 cases of mixed colonization with Enterobacter and E. coli. Norovirus and Astrovirus were detected in children with clinical signs suggestive of diarrhea. These viruses were detected exclusively among children residing in urban areas. All fecal samples were negative for the presence of the rotavirus species A and C. The presence of Giardia lamblia, Entamoeba coli, Endolimax nana and hookworm was observed. A significant association was found between food consumption outside home and daycare center and the presence of intestinal parasites. Conclusions: For children of this daycare center, intestinal infection due to pathogens does not seem to have contributed to the occurrence of diarrhea or other intestinal symptoms. The observed differences may be due to the wide diversity of geographical, social and economic characteristics and the climate of Brazil, all of which have been reported as critical factors in the modulation of the frequency of different enteropathogens.

  12. Effects on Salmonella shell contamination and trans-shell penetration of coating hens' eggs with chitosan.

    Science.gov (United States)

    Leleu, S; Herman, L; Heyndrickx, M; De Reu, K; Michiels, C W; De Baerdemaeker, J; Messens, W

    2011-01-31

    Chitosan is a biopolymer with antimicrobial activity and film-forming properties. In this study, the effects on Salmonella shell contamination and trans-shell penetration of coating hens' eggs with chitosan was evaluated. A chitosan was selected from eight types (four non-commercial and four commercial) based on its antimicrobial activity against Salmonella enterica serovar Enteritidis (S. Enteritidis). For this purpose, a contact plate method was developed and chitosans were applied at a concentration of 0.25% (w/v). A commercial type with a molecular weight of 310-375 kDa and a deacetylation degree of 75% that reduced S. Enteritidis by 0.71 log(10) colony forming units compared to the control (without chitosan) was selected for further studies. The chitosan was shown to have antimicrobial activity against other egg borne bacteria, i.e., Acinetobacter baumannii, Alcaligenes sp., Carnobacterium sp., Pseudomonas sp., Serratia marcescens and Staphylococcus warneri, and against S. enterica serovar Typhimurium, Escherichia coli and Listeria monocytogenes. The effects of various concentrations of the selected chitosan (0.25%, 1% and 2%) on Salmonella shell contamination and trans-shell penetration were assessed using the agar molding technique. Effective reduction of eggshell contamination could not be demonstrated, but trans-shell penetration was significantly reduced in the presence of a 2% chitosan eggshell coating, with only 6.1% of the eggs being penetrated compared to 24.5% of the uncoated eggs. It was concluded that the 2% chitosan coating has the potential to reduce contamination of egg contents resulting from trans-shell penetration by S. Enteritidis. PMID:21146239

  13. Bacteria in crude oil survived autoclaving and stimulated differentially by exogenous bacteria.

    Directory of Open Access Journals (Sweden)

    Xiao-Cui Gong

    Full Text Available Autoclaving of crude oil is often used to evaluate the hydrocarbon-degrading abilities of bacteria. This may be potentially useful for bioaugmentation and microbial enhanced oil recovery (MEOR. However, it is not entirely clear if "endogenous" bacteria (e.g., spores in/on crude oil survive the autoclaving process, or influence subsequent evaluation of the hydrocarbon-degradation abilities of the "exogenous" bacterial strains. To test this, we inoculated autoclaved crude oil medium with six exogenous bacterial strains (three Dietzia strains, two Acinetobacter strains, and one Pseudomonas strain. The survival of the spore-forming Bacillus and Paenibacillus and the non-spore-forming mesophilic Pseudomonas, Dietzia, Alcaligenes, and Microbacterium was detected using a 16S rRNA gene clone library and terminal restriction fragment length polymorphism (T-RFLP analysis. However, neither bacteria nor bacterial activity was detected in three controls consisting of non-inoculated autoclaved crude oil medium. These results suggest that detection of endogenous bacteria was stimulated by the six inoculated strains. In addition, inoculation with Acinetobacter spp. stimulated detection of Bacillus, while inoculation with Dietzia spp. and Pseudomonas sp. stimulated the detection of more Pseudomonas. In contrast, similar exogenous bacteria stimulated similar endogenous bacteria at the genus level. Based on these results, special emphasis should be applied to evaluate the influence of bacteria capable of surviving autoclaving on the hydrocarbon-degrading abilities of exogenous bacteria, in particular, with regard to bioaugmentation and MEOR. Bioaugmentation and MEOR technologies could then be developed to more accurately direct the growth of specific endogenous bacteria that may then improve the efficiency of treatment or recovery of crude oil.

  14. DNA-fingerprinting di stipiti di Chryseobacterium spp isolati da pazienti con Fibrosi Cistica

    Directory of Open Access Journals (Sweden)

    Antonietta Lambiase

    2007-03-01

    Full Text Available Objectives: Pulmonary infections by Gram-negative bacteria, as Pseudomonas aeruginosa, Burkholderia cepacia, Stenotrophomonas maltophilia, are the major cause of morbidity in Cystic Fibrosis patients. In the past decade, several pathogens as Alcaligenes spp and no tuberculosis mycobacteria have been recovered in these patients. Bacteria of genus Chryseobacterium are widespread Gram-negative microrganisms and involved in human infections. Aims of this study were to value the isolation frequency of Chryseobacterium strains in a cohort of Cystic Fibrosis patients, to investigate their antimicrobial sensibility and to establish possible clonal likeness between strains. Methods:A retrospective study was undertaken between January 2003 and December 2005 on 300 patients receiving care at the Regional Cystic Fibrosis Centre of Naples University “Federico II”. Sputum samples were checked: for bacterial identification, selective media and commercial identification systems were used.The activity of antimicrobial agents was determined using diffusion and microdiluthion methods. For DNA-fingerprinting, a genomic DNA macrorestriction followed by pulsed-field electrophoresis was carried out. Results:A total of 26 strains from 17 patients were isolated (7 C. meningosepticum, 14 C. indologenes, 5 C. gleum. Strains were resistant to cephalosporins and carbapenems; some were sensitive to ciprofloxacin, levofloxacin and trimethoprim-sulphamethoxazole. Macrorestriction analysis showed substantial heterogeneity among strains. Conclusions: Actually, the prognostic role of Chryseobacterium in Cystic Fibrosis is unclear and although the small number of isolations, it is need to be on the look out regard such microorganisms. The considerable resistance implies difficulties on therapeutic approach. Results of DNA-fingerprinting indicate no evidence of clonal likeness and then of patient-to-patient spread.

  15. 高效脱色菌的特性及其在染化废水厌氧处理中的生物强化作用%The Characteristics of High-efficient Decoloring Strains and Their Bioaugmentation in Anaerobic Treatment of Dyestuff Wastewater

    Institute of Scientific and Technical Information of China (English)

    徐向阳; 张明洲; 俞秀娥

    2001-01-01

    从活性污泥等微生物源中分离、筛选获得10株高效脱色菌,经鉴定其属于Pseudomonas,Bacillus,Xanthomonas,Erwinia,Alealigenes,Plesiomonas。对艳红染料生产废水脱色试验表明:最适温度30℃,pH 6.6~8.0,湿细胞浓度20~30!g*L-1;静置培养(兼氧)脱色率高于振荡培养;外加NADH、NADPH、易降解有机物和有机废水可强化脱色菌的脱色性能。为实现脱色菌的资源化应用,试验将Pseudomonas D18 , Erwinia D17, Alcaligenes D19 and Plesiomonas D12 4株脱色菌制成混合培养物和固定化细胞,分别投加于处理染化废水的厌氧反应器,结果发现:在相同COD负荷、水力负荷条件下,投加固定化细胞的反应器,其脱色率可提高5!%~10!%,出水苯胺浓度提高40!%~65!%。电镜观察发现脱色菌在胶团内外持留、增殖。厌氧反应器性能的改善主要通过功能性微生物生物量和相关基因库量的增加而实现。

  16. Biotechnological process for production of beta-dipeptides from cyanophycin on a technical scale and its optimization.

    Science.gov (United States)

    Sallam, Ahmed; Kast, Alene; Przybilla, Simon; Meiswinkel, Tobias; Steinbüchel, Alexander

    2009-01-01

    A triphasic process was developed for the production of beta dipeptides from cyanophycin (CGP) on a large scale. Phase I comprises an optimized acid extraction method for technical isolation of CGP from biomass. It yielded highly purified CGP consisting of aspartate, arginine, and a little lysine. Phase II comprises the fermentative production of an extracellular CGPase (CphE(al)) from Pseudomonas alcaligenes strain DIP1 on a 500-liter scale in mineral salts medium, with citrate as the sole carbon source and CGP as an inductor. During optimization, it was shown that 2 g liter(-1) citrate, pH 6.5, and 37 degrees C are ideal parameters for CphE(al) production. Maximum enzyme yields were obtained after induction in the presence of 50 mg liter(-1) CGP or CGP dipeptides for 5 or 3 h, respectively. Aspartate at a concentration of 4 g liter(-1) induced CphE(al) production with only about 30% efficiency in comparison to that with CGP. CphE(al) was purified utilizing its affinity for the substrate and its specific binding to CGP. CphE(al) turned out to be a serine protease with maximum activity at 50 degrees C and at pH 7 to 8.5. Phase III comprises degradation of CGP to beta-aspartate-arginine and beta-aspartate-lysine dipeptides with a purity of over 99% (by thin-layer chromatography and high-performance liquid chromatography), employing a crude CphE(al) preparation. Optimum degradation parameters were 100 g liter(-1) CGP, 10 g liter(-1) crude CphE(al) powder, and 4 h of incubation at 50 degrees C. The overall efficiency of phase III was 91%, while 78% (wt/wt) of the used CphE(al) powder with sustained activity toward CGP was recovered. The optimized process was performed with industrial materials and equipment and is applicable to any desired scale.

  17. Rhizoma Coptidis alkaloids alleviate hyperlipidemia in B6 mice by modulating gut microbiota and bile acid pathways.

    Science.gov (United States)

    He, Kai; Hu, Yinran; Ma, Hang; Zou, Zongyao; Xiao, Yubo; Yang, Yong; Feng, Min; Li, Xuegang; Ye, Xiaoli

    2016-09-01

    It is hypothesized that Rhizoma Coptidis (RC) alkaloids exert their hypolipidemic effects primarily by targeting the gastrointestinal tract and liver. Thus, this study was conducted to evaluate the antihyperlipidemic mechanisms of RC alkaloids (at a daily dose of 140mg/kg for 35days) in high-fat and high-cholesterol induced hyperlipidemic B6 mice. After treatment, serum lipid parameters were determined, the expression of lipid metabolism related genes and pathways such as the sterol regulatory element binding proteins (SREBPs) and bile acid signaling in mice were also investigated. Meanwhile, Illumina sequencing was used to investigate the differences in gut microbiota of B6 mice. The results indicated that RC alkaloids reduced the body weight gain and serum total cholesterol (TC), triglyceride (TG), low-density lipoprotein cholesterol (LDL-C), total bile acids (TBA) and lipopolysaccharide of B6 mice. Liver fat deposition and epididymal adipose cell size were also deceased in therapy group. RC alkaloids feeding significantly promoted the abundance of Sporobacter termitidis, Alcaligenes faecalis, Akkermansia muciniphila in the gut of mice, whereas, the abundance of Escherichia coli, Desulfovibrio C21_c20, Parabacteroides distasonis was suppressed. The observed antihyperlipidemic effects of RC alkaloids can also be attributed to their action as agonists of FXR and TGR5, activators for SREBP2, LDLR, UCP2 and CYP7A1, inhibitors of HMGCR, TXNIP, TLR4 and JNK. Therefore, this study expands current knowledge on hypolipidemic mechanisms of RC alkaloids and presents new evidence supporting a key role for RC alkaloids as regulators of lipid homeostasis by modulation gut microbiota and hepatic lipid metabolism. PMID:27287254

  18. Solvent-free lipase catalysed synthesis of diacylgycerols as low-calorie food ingredients

    Directory of Open Access Journals (Sweden)

    Luis eVazquez

    2016-02-01

    Full Text Available Problems derived from obesity and overweight have recently promoted the development of fat substitutes and other low-calorie foods. On the one hand, fats with short and medium chain fatty acids are a source of quick energy, easily hydrolyzable and hardly stored as fat. Furthermore, 1,3-diacylglycerols are not hydrolyzed to 2-monoacylglycerols in the gastrointestinal tract, reducing the formation of chylomicron and lowers the serum level of triacylglycerols by decreasing its re-synthesis in the enterocyte and its metabolism and absorption by the enterocyte are limited in comparison with the TAG, reducing chylomicron formation. In this work these two effects were combined to synthesize short and medium chain 1,3 diacylglycerols, leading to a product with great potential as for their low-calorie properties. Lipase catalysed transesterification reactions were performed between short and medium chain fatty acid ethyl esters and glycerol. Different variables were investigated such as the type of biocatalyst, the molar ratio FAEE:glycerol, the adsorption of glycerol on silica gel or the addition of lecithin. Best reaction conditions were evaluated considering the conversion intopercentage of 1,3-DAG produced and the reaction rate. Except Novozym 435 (Candida antarctica, other lipases required the adsorption of glycerol on silica gel to form acylglycerols. Lipases that gave the best results with adsorption were Novozym 435 and Lipozyme RM IM (Rhizomucor miehei with 52% and 60.7% of DAG at 32 h, respectively. Because of its specificity for sn-1 and sn-3 positions, lipases leading to a higher proportion of 1,3-DAG vs 1,2-DAG were Lipozyme RM IM (39.8% and 20.9%, respectively and Lipase PLG (Alcaligenes sp. (35.9% and 19.3%, respectively. By adding 1% (w/w of lecithin to the reaction with Novozym 435 and raw glycerol the reaction rate was considerably increased from 41.7% to 52.8% DAG at 24 h.

  19. Screening of marine bacteria with bacteriocin-like activities and probiotic potential for ornate spiny lobster (Panulirus ornatus) juveniles.

    Science.gov (United States)

    Nguyen, Van Duy; Pham, Thu Thuy; Nguyen, Thi Hai Thanh; Nguyen, Thi Thanh Xuan; Hoj, Lone

    2014-09-01

    Bacteriocins are ribosomally synthesized antimicrobial peptides, which have been found in diverse bacterial species of terrestrial origins and some from the sea. New bacteriocins with new characteristics, new origins and new applications are likely still awaiting discovery. The present study screened bacteria isolated from marine animals of interest to the aquaculture industry for antimicrobial and bacteriocin-like activities in order to uncover biodiversity of bacteriocin producers, and explore the potential application in aquaculture. In total, 24 of 100 screened isolates showed antimicrobial activities and 7 of these exerted bacteriocin-like activities. Sequencing of 16S rRNA genes identified the isolates as members of the six genera Proteus, Providencia, Klebsiella, Alcaligenes, Bacillus and Enterococcus. In some cases, further analysis of housekeeping genes, rpoB for Proteus and recA for Klebsiella, as well as biochemical tests was necessary for identification to species level, and some of the Proteus isolates may represent novel species. The seven bacteriocinogenic isolates showed a wide antimicrobial spectrum against foodborne and animal pathogens, which opens the way to their potential use as marine drugs and probiotics in food, aquaculture, livestock and clinical settings. As a case study, the protective effect of shortlisted bacteriocinogenic isolates were tested in aquaculture-raised spiny lobster (Panulirus ornatus) juveniles. A single-strain (Bacillus pumilus B3.10.2B) and a three-strain (B. pumilus B3.10.2B, Bacillus cereus D9, Lactobacillus plantarum T13) probiotic preparation were added to the feed of Panulirus ornatus juveniles, which were subsequently challenged with the pathogen Vibrio owensii DY05. Juveniles in the probiotic treatments displayed increased growth and reduced feed conversion rates after 60 days, and increased survival rate after pathogen challenge relative to the control. This study represents the first evidence of bacteriocin

  20. 十溴联苯醚降解菌群的降解特性与组成分析%Characteristics and composition of the microbial consortium for decabromodiphenyl ether (BDE-209) degradation

    Institute of Scientific and Technical Information of China (English)

    陈桂兰; 陈杏娟; 郭俊; 孙国萍; 陆祖军; 麦碧娴; 许玫英

    2013-01-01

    [Objective] A microbial consortium Cf3, which was obtained and enriched from an e-waste contaminated river sediment, was applied to study the characteristics for decabromodiphenyl ether (BDE-209) degradation in order to pave a way for the bioremediation of PBDEs contaminant in sediment. And the composition of the microbial consortium was also studied. [Methods] Congeners of BDE-209 after the biodegradation were analyzed by GC-MS and the degradation rates were calculated. The composition of the microbial consortium was analyzed by DGGE. [Results] High BDE-209 degradation rates were obtained by consortium Cf3. After 120 days incubation, 80.03% BDE-209 was transformed by consortium Cf3 when the initial amount of BDE-209 was 2.6 μmol. Meanwhile, the biomass was obtained and the OD600 value increased from 0.01 to 0.21. The pH also changed from 6.93 to 8.50 during the degradation process. Ten cultivable strains were isolated from this consortium, six of which associated with Citrobacter spp. and four with Alcaligenes spp. based on the 16S rRNA gene sequences. Denaturing gradient gel electrophoresis (DGGE) results showed that other four major genera Wolinella spp., Acidaminococcus spp., Acetobacterium spp. and Desulfovibrio spp. were presented besides Citrobacter spp. and Alcaligenes spp.. However, the bands for Acetobacterium spp. and Desulfovibrio spp. disappeared with prolonging the incubation time. [Conclusion] A microbial consortium with high PBDEs degradation rate was obtained. The data obtained in the study about the characteristics of the degradation of BDE-209 by the microbial consortium and the composition of the consortium could provides some useful information and precious strains resources for the anaerobic bioremediation of polybrominated di-phenyl ethers (PBDEs) in the persistent organic polluted environment.%[目的]针对水体沉积物中日益严重的多溴联苯醚污染问题,以电子垃圾污染河床沉积物为种源

  1. Hand hygiene and hand-washing compliance of medical staff:current status and administration strategies%医务人员手卫生与洗手依从性现状及管理对策

    Institute of Scientific and Technical Information of China (English)

    范文; 黄娥; 段六生; 雷鸿斌; 易光明

    2011-01-01

    目的 了解医务人员手卫生的现状,研究手卫生与医院感染的关系,从而制定手卫生管理对策.方法随机抽查8个临床科室部分医务人员手污染现状,研究医务人员手携带病原菌的种类及性质,分析其污染因素.结果医务人员工作过程中手细菌携带率为100.0%,洗手后细菌携带率为30.4%;携带的主要细菌为:大肠埃希菌、肺炎克雷伯菌、铜绿假单胞菌、产碱假单胞菌、变形菌属、金黄色葡萄球菌、凝固酶阴性葡萄球菌和肠球菌属等.结论医务人员手部污染是医院交叉感染的重要危险因素,必须强化医务人员医院感染理念教育,重视手卫生的监督管理,提高对洗手的认知性和依从性,才能有效预防与控制由手传播的医院内交叉感染.%OBJECTIVE To understand the status of hand hygiene of medical staff and investigate the relation between hand hygiene and nosocomial infections to institute the administration strategy of hand hygiene.METHODS The random inspection of hand hygiene was performed for parts of medical staff in 8 clinical departments. The species of carrying pathogens were investigated. The reasons for contamination were analyzed.RESULTS The carrying rate of pathogenic bacteria before hand-washing was 100. 0% while which after hand-washing was 30.4 %. The common pathogenic were Escherichia coli, Klebsiella pneumouia, Pseudomonas aeruginosa , Pseudomonas alcaligenes , Bacillus proteus, Staphylococcus aureus , Coagulase negative Staphylococcus and Enterococci, and so on. CONCLUSION The hand contamination is the important risk factor of hospital cross infection. The hospital infections idea of medical staff should be strengthened, the supervision of hand hygiene and the enhancement of the recognition and compliance of hand-washing should be attached importance to effectively prevent and control the hospital cross infection communicated through hands.

  2. Rapid identification of LT+ E. coli by means of PCR and its test comparisons

    Institute of Scientific and Technical Information of China (English)

    Ying Xia Cui; Hai Feng Shao; Yu Hua Yang

    2000-01-01

    AIM To select a test method for specifical, sensitive and rapid identification of LT+ E. coli.METHODS Stool samples inoculated into LB solution were cultured for 4 hours at 35℃. 10 μ boiled culturesolution was taken to template. Two oligonucleotide primers were used in a polymerase chain reaction (PCR)procedure to amplify a highly conserved DNA sequence of the A subunit of the heat-labile enterotoxin.Detection of the 110 bp amplified product can be done by agarose gel electrophoresis. Thirty strains ofknown bacteria (LT+ E. coli (EC-129), ST+ E. coli (EC-130)and LT+ ST+ E. coli (EC-142), Salmonellatyphimurium , Salmonella typhi , Salmonella paratyphi A, Salmonella group C, Shigella sonnei , Enterobacteraerogenes, Alcaligenes sp, Providencia rettgeri, Proteus mirabilis, Morganella morganii, Pseudomouasaeruginosa, Aeromonas hydrophila, Klebsiella pneumoniae, Citrobacter diversus, Enterobacter cloacae, 12strains of E. coli isolated from bile samples ) and 108 diarrhea samples were detected. A total of 108 diarrheasamples were compared with LT probe hybridization, modified Eleck (M-Eleck) and ELISA simultaneously.RESULTS By PCR, of the 30 strains of bacteria, only LT+ E. coli and LT+ ST+ E. coli were positive; in40 of the 108 diarrhea samples, 20 were positive and in the other 68 samples from infants, only five werefound to be positive. Of the 25 positive samples by PCR, 23 were also found to be positive in the other 3tests; 1 was found to be positive by M-Eleck and ELISA. Of the 83 negative samples by PCR, the samenegative results were found by M-EIeck and ELISA, but 2 were found to be positive by LT probehybridization. The overall coincidence rate was about 95%. Analysis of correlation showed a significantdifference between PCR and other three tests (P0.05) between them. In the detection of LT+ E. coli by means of PCR, the minimumnumber of target bacteria required was 50 CFU. The whole test was finished in 7 hours.CONCLUSION Detection of LT+ E. coli by PCR showed

  3. Effects of Microbial and Phosphate Amendments on the Bioavailability of Lead (Pb) in Shooting Range Soil

    Energy Technology Data Exchange (ETDEWEB)

    Brigmon, Robin; Wilson, Christina; Knox, Anna; Seaman, John; Smith, Garriet

    2005-06-16

    Heavy metals including lead (Pb) are released continually into the environment as a result of industrial, recreational, and military activities. Lead ranked number two on the CERCLA Priority List of Hazardous Substances and was identified as a major hazardous chemical found on 47% of USEPA's National Priorities List sites (Hettiarachchi and Pierzynski 2004). In-situ remediation of lead (Pb) contaminated soils may be accomplished by changing the soil chemistry and structure with the application of microbial and phosphate amendments. Soil contaminated with lead bullets was collected from the surface of the berm at Savannah River Site (SRS) Small Arms Training Academy (SATA) in Aiken, SC. While uncontaminated soils typically have Pb levels ranging from 2 to 200 mg/kg (Berti et al. 1998), previous analysis show Pb levels of the SATA berm to reach 8,673 mg/kg. Biosurfactants are surface-active compounds naturally produced by soil bacteria that can bind metals. Biosurfactants have a wide variety of chemical structures that reduce interfacial surface tensions (Jennings and Tanner 2000) and have demonstrated efficient metal complexion (Lin 1996). Biosurfactants also have the potential to change the availability of natural organic matter (Strong-Gunderson 1995). Two types of bacteria, Alcaligenes piechaudii and Pseudomonas putida, were employed as amendments based on their ability to produce biosurfactants and survive in metal-contaminated soils. Apatites (calcium phosphate compounds) are important in the formation of Pb phosphates. Pb phosphates form rapidly when phosphate is available and are the most stable environmental form of lead in soil (Ruby et al.1998). Pyromorphites in particular remain insoluble under a wide range of environmental conditions (Zhang et al. 1998). The three apatites evaluated in the current study were North Carolina apatite (NCA), Florida apatite (FA), and biological apatite (BA). BA is ground fish bone that has few impurities such as As, Cr

  4. The respiratory arsenite oxidase: structure and the role of residues surrounding the rieske cluster.

    Directory of Open Access Journals (Sweden)

    Thomas P Warelow

    Full Text Available The arsenite oxidase (Aio from the facultative autotrophic Alphaproteobacterium Rhizobium sp. NT-26 is a bioenergetic enzyme involved in the oxidation of arsenite to arsenate. The enzyme from the distantly related heterotroph, Alcaligenes faecalis, which is thought to oxidise arsenite for detoxification, consists of a large α subunit (AioA with bis-molybdopterin guanine dinucleotide at its active site and a 3Fe-4S cluster, and a small β subunit (AioB which contains a Rieske 2Fe-2S cluster. The successful heterologous expression of the NT-26 Aio in Escherichia coli has resulted in the solution of its crystal structure. The NT-26 Aio, a heterotetramer, shares high overall similarity to the heterodimeric arsenite oxidase from A. faecalis but there are striking differences in the structure surrounding the Rieske 2Fe-2S cluster which we demonstrate explains the difference in the observed redox potentials (+225 mV vs. +130/160 mV, respectively. A combination of site-directed mutagenesis and electron paramagnetic resonance was used to explore the differences observed in the structure and redox properties of the Rieske cluster. In the NT-26 AioB the substitution of a serine (S126 in NT-26 for a threonine as in the A. faecalis AioB explains a -20 mV decrease in redox potential. The disulphide bridge in the A. faecalis AioB which is conserved in other betaproteobacterial AioB subunits and the Rieske subunit of the cytochrome bc 1 complex is absent in the NT-26 AioB subunit. The introduction of a disulphide bridge had no effect on Aio activity or protein stability but resulted in a decrease in the redox potential of the cluster. These results are in conflict with previous data on the betaproteobacterial AioB subunit and the Rieske of the bc 1 complex where removal of the disulphide bridge had no effect on the redox potential of the former but a decrease in cluster stability was observed in the latter.

  5. 罗非鱼冷藏过程细菌种群的变化%Bacterial species changes in cultured tilapia during chilled storage

    Institute of Scientific and Technical Information of China (English)

    杨宪时; 郭全友; 许钟

    2008-01-01

    对养殖尼罗罗非鱼(Oreochromis niloticus)0~10℃贮藏过程中感官、化学、微生物品质和细菌种群消长研究表明,初始样品挥发性盐基氮为(8.08±0.29)mg/(100g),菌落总数(CFu,g)的对数值为4.79±0.60;细菌种群复杂,种类繁多,分离到570株菌,其中80.5%为革兰氏阴性菌,13.6%为革兰氏阳性菌,优势菌是假单胞菌(Pseudomonas spp.)(36.5%)、肠杆菌科细菌(Enterobacteriaceae)(14.2%)和气单胞菌(Aeromonas spp.)(15.3%),同时检出了一定比例的不动杆菌和其他细菌.冷藏过程中肠杆菌科细菌、气单胞菌等生长受到抑制,细菌菌相组成逐渐变得单一,适应低温环境下革兰氏阴性菌比例不断增加,0℃、5℃、10℃贮藏至货架期终点时,阴性菌的比例分别达到86.4%、88.9%、100.0%:假单胞菌增殖显著,比例分别达到80.7%、68.1%、60.0%,可确认其为0~10℃贮藏罗非鱼的优势腐败菌.假单胞菌的种类变化趋势显示,优势顺序分别为荧光假单胞菌(P.fluorescens)、恶臭假单胞菌(P.putida)、铜绿假单胞菌(P.aeruginosa)、产碱假单胞菌(P.alcaligenes),0℃、5℃、10℃贮藏至货架期终点时,假单胞菌中荧光假单胞菌分别占52.1%、53.1%、59.3%,可确认其为最优势种群.[中国水产科学,2008,15(6):1 050-1 055

  6. Characterization of two diesel fuel degrading microbial consortia enriched from a non acclimated, complex source of microorganisms

    Directory of Open Access Journals (Sweden)

    Varese Giovanna C

    2010-02-01

    Full Text Available Abstract Background The bioremediation of soils impacted by diesel fuels is very often limited by the lack of indigenous microflora with the required broad substrate specificity. In such cases, the soil inoculation with cultures with the desired catabolic capabilities (bioaugmentation is an essential option. The use of consortia of microorganisms obtained from rich sources of microbes (e.g., sludges, composts, manure via enrichment (i.e., serial growth transfers on the polluting hydrocarbons would provide bioremediation enhancements more robust and reproducible than those achieved with specialized pure cultures or tailored combinations (co-cultures of them, together with none or minor risks of soil loading with unrelated or pathogenic allocthonous microorganisms. Results In this work, two microbial consortia, i.e., ENZ-G1 and ENZ-G2, were enriched from ENZYVEBA (a complex commercial source of microorganisms on Diesel (G1 and HiQ Diesel (G2, respectively, and characterized in terms of microbial composition and hydrocarbon biodegradation capability and specificity. ENZ-G1 and ENZ-G2 exhibited a comparable and remarkable biodegradation capability and specificity towards n-C10 to n-C24 linear paraffins by removing about 90% of 1 g l-1 of diesel fuel applied after 10 days of aerobic shaken flask batch culture incubation at 30°C. Cultivation dependent and independent approaches evidenced that both consortia consist of bacteria belonging to the genera Chryseobacterium, Acinetobacter, Psudomonas, Stenotrophomonas, Alcaligenes and Gordonia along with the fungus Trametes gibbosa. However, only the fungus was found to grow and remarkably biodegrade G1 and G2 hydrocarbons under the same conditions. The biodegradation activity and specificity and the microbial composition of ENZ-G1 and ENZ-G2 did not significantly change after cryopreservation and storage at -20°C for several months. Conclusions ENZ-G1 and ENZ-G2 are very similar highly enriched consortia

  7. 两种氧疗方式氧疗器具细菌污染的调查分析%Investigation of bacterial contamination of oxygen therapy apparatus by two HBO

    Institute of Scientific and Technical Information of China (English)

    王靖; 艾彪; 朱丽莎

    2012-01-01

    OBJECTIVE To strengthen the monitoring of disinfection of ward oxygen inhalation therapy apparatus so as to avoid the hospital-acquired respiratory tract infections. METHODS The sampling of the oxygen humidifier bottles and wet fluid were performed in 32 clinical departments, the bacterial colony counts and the species were detected, the oxygen therapy apparatuses were divided into two groups according to approaches, the long-term oxygen therapy group and the intermittent oxygen therapy group, the correlation between the bacterial contamination of oxygen therapy devices and oxygen therapy approach was analyzed. RESULTS There were totally . 748 samples including 386 samples with long-term oxygen therapy with the qualified' rate of 90. 67% and 362 samples of intermittent oxygen therapy with the qualified rate of 61. 88%; gram-negative bacteria were the predominant pathogens, followed by the coagulase-negative Staphylococci, Escherichia coli and Pseudomonas al-caligenes. CONCLUSION It is of great significance to focus on the standardized management of oxygen inhalation therapy apparatus and strengthen the monitoring of disinfection of oxygen inhalation therapy apparatus.%目的 加强病房氧气吸入治疗器具的消毒监测管理,避免医院获得性呼吸道感染.方法 对医院32个临床科室正在使用的氧气湿化瓶及湿化液进行采样,检测细菌菌落数及菌种,将氧疗器具依使用方式不同分为两组,即长期给氧组及间断给氧组,分析氧疗装置的细菌污染情况与氧疗方式的关系.结果 共采样748份,其中长期给氧组386份,合格率为90.67%,间断给氧组362份,合格率为61.88%;病原菌以革兰阴性菌为主,凝固酶阴性葡萄球菌、大肠埃希菌吸类产碱假单胞菌较多.结论 重视病房氧气吸入治疗器具的规范化管理,加强氧气吸入治疗器具的消毒监测,对预防控制医院获得性呼吸道感染至关重要.

  8. The synthesis of Polyhydroxybutyrate (PHB) by Transgenic Chlamydomonas Reinhardtii%利用转基因衣藻合成聚-β-羟基丁酸的研究

    Institute of Scientific and Technical Information of China (English)

    王潮岗; 胡章立

    2005-01-01

    聚-β-羟基丁酸(polyhydroxybutyric acid,PHB)是发现最早且研究最透彻的一种生物可降解塑料.莱茵衣藻(Chlamydomonas reinhardtii)素有"光合酵母"之称,是理想的转基因受体生物.通过转基因技术将PHB生物合成的关键酶基因导入莱茵衣藻,利用光合作用合成PHB,降低PHB的生产成本.从真养产碱杆菌(Alcaligenes eutrophus)分离出phbB和phbC基因,然后构建phbB和phbC基因的衣藻表达载体p105B124和pH105C124.通过"珠磨法"遗传转化技术共转化p105B124和pH105C124,获得了二价转基因衣藻.分子检测结果表明phbB和phbC基因均已整合到莱茵衣藻基因组中.随后进行结晶紫染色和显微镜观察转基因藻,发现二价转化子的核区和细胞膜附近分布有白色空泡;进一步的电子显微镜观察结果表明白色空泡是由细胞中合成的PHB聚集而成,电镜下观察到由PHB形成的明亮的圆形颗粒.光照(90μE/m2/s)条件下培养转基因藻,出现生长受抑制现象,这可能是由于PHB颗粒在藻细胞内随机分布,干扰了细胞正常的生命活动.

  9. Runoff rates, chemical speciation and bioavailability of copper released from naturally patinated copper.

    Science.gov (United States)

    Karlén, C; Wallinder, I Odnevall; Heijerick, D; Leygraf, C

    2002-01-01

    The release of copper, induced by atmospheric corrosion, from naturally patinated copper of varying age (0 and 30 years) has been investigated together with its potential ecotoxic effect. Results were generated in an interdisciplinary research effort in which corrosion science and ecotoxicology aspects were combined. The aim of the investigation was to elucidate the situation when copper-containing rainwater leaves a roof in terms of runoff rate, chemical speciation, bioavailability and ecotoxicity effects. Data have been collected during a three-year field exposure conducted in the urban environment of Stockholm, Sweden. The potential environmental effects have been evaluated using a combination of a copper specific biosensor test with the bacterium Alcaligenes eutrophus and the conventional 72-h growth inhibition test with the green alga Raphidocelis subcapitata. The results show annual runoff rates between 1.0 and 1.5 g/m2 year for naturally patinated copper of varying age. The runoff rate increased slightly with patina age, which mainly is attributed to the enhanced first flush effect observed on thicker patina layers. The total copper concentration in investigated runoff samplings ranged from 0.9 to 9.7 mg/l. Both computer modeling and experimental studies revealed that the majority (60-100%) of released copper was present as the free hydrated cupric ion, Cu(H2O)6(2+), the most bioavailable copper species. However, other copper species in the runoff water, such as, e.g. Cu(OH)+ and Cu2(OH)2(2+), were also bioavailable. The copper-containing runoff water, sampled directly after release from the roof, caused significant reduction in growth rate of the green alga. It should be emphasized that the results describe the runoff situation immediately after release from the copper roof and not the real environmental ecotoxicity. Therefore the data should only be used as an initial assessment of the potential environmental effect of copper runoff from building

  10. Comparative effect of methioninyl adenylate on the growth of Salmonella typhimurium and Pseudomonas aeruginosa.

    Science.gov (United States)

    Enouf, J; Laurence, F; Farrugia, G; Blanchard, P; Robert-Gero, M

    1976-10-11

    The bacteriostatic effect of methioninyl adenylate(MAMP)--a specific inhibitor of the enzyme methionyl-tRNA synthetase--was investigated on Salmonella typhimurium and Pseudomonas aeruginosa. 0.1 mM of this molecule added to the culture, inhibits the growth of S. typhimurium. The inhibition is specifically reversible by 0.1 mM L-methionine. In the same conditions even 1-2 mM MAMP has a very slight effect on the growth rate of P. aeruginosa and only during the first two generations. The same observation was made with the two other members of the fluorescens group P.fluorescens and P.putida. The growth rate of P. testosteroni with 1 mM MAMP in the medium is similar to the growth rate of P. aeruginosa but the other member of the acidovorans group P. acidovorans is much more affected by the smae concentration of the inhibitor. --P. multivorans is inhibited by MAMP like P. acidovorans but with a somewhat higher yield at the end of the culture. --MAMP has no effect on P. alcaligenes. The possible reasons for the weak bacteriostatic effect of MAMP on P. aeruginosa were investigated. It was established that the inhibitor enters the cells and is not used as a carbon and energy source. The intracellular methionine concentration in S. typhimurium and in P. aeruginosa is about the same and does not increase when bacteria are cultivated with MAMP. The MTS of the two microorganisms is inhibited by MAMP in vitro to about the same extent. Furthermore the tRNAmet from P. aeruginosa are fully acylated after 3 to 4 generations with this compound. Nevertheless MAMP elicits higher MTS activity in P. aeruginosa and in P. acidovorans after 1 h of incubation. The most striking difference between S. typhimurium and P. aeruginosa is that the intra and extracellular level of 5'phosphodiesterase which degrades MAMP is 10-20 fold higher in the second than in the first species.

  11. Widespread occurrence of the tfd-II genes in soil bacteria revealed by nucleotide sequence analysis of 2,4-dichlorophenoxyacetic acid degradative plasmids pDB1 and p712.

    Science.gov (United States)

    Kim, Dong-Uk; Kim, Min-Sun; Lim, Jong-Sung; Ka, Jong-Ok

    2013-05-01

    Variovorax sp. strain DB1 and Pseudomonas pickettii strain 712 are 2,4-dicholorophenoxy-acetic acid (2,4-D)-degrading bacteria, which were isolated from agricultural soils in Republic of Korea and USA, respectively. Each strain harbors a 2,4-D degradative plasmid and is able to utilize 2,4-D as the sole source of carbon for its growth. The 2,4-D degradative plasmid pDB1 of strain DB1 consisted of a 65,269-bp circular molecule with a G+C content of 66.23% and had 68 ORFs. The 2,4-D degradative plasmid p712 of strain 712 was composed of a 62,798-bp circular molecule with a 62.11% G+C content and had 62 ORFs. The plasmids pDB1 and p712 share significantly homologous 2,4-D degradative genes with high similarity to the tfdR, tfdB-II, tfdC-II, tfdD-II, tfdE-II, tfdF-II, tfdK and tfdA genes of plasmid pJP4 of Alcaligenes eutrophus isolated from Australia. In a phylogenetic analysis with trfA, traL, and trbA genes, pDB1 belonged to IncP-1β with pJP4, while p712 belonged to IncP-1ε with pKJK5 and pEMT3. The results indicated that, in spite of the differences in their backbone regions, the 2,4-D catabolic genes of the two plasmids were closely related and also related to the well-known 2,4-D degradative plasmid pJP4 even though all were isolated from different geographic regions. Other similarities in the genetic organization and the presence of IS1071 suggested that these catabolic genes may be on a transposable element, leading to widespread occurrence in soil bacteria. PMID:23376020

  12. Molecular Identification of Lipase Production Microorganisms by Analyzing rDNA Sequences%基于核糖体基因序列快速鉴定产脂肪酶微生物

    Institute of Scientific and Technical Information of China (English)

    徐莉; 杨江科; 刘云; 闫云君

    2009-01-01

    利用含罗丹明B的橄榄油检测平板从中国各省市油污土壤中分离、筛选产脂肪酶微生物菌株,扩增细菌的核糖体基因16S rDNA序列和真菌的ITS2序列,分析核糖体基因簇DNA,并结合形态学特征从而对产脂肪酶菌株进行分子生物学鉴定.核糖体基因16S rDNA序列分析及系统发育分析表明,分离得到的产脂肪酶细菌分别属于枯草芽孢杆菌(Bacillus subtilis)、产碱假单胞菌(Pseudomonas alcaligenes)、洋葱伯克霍尔德氏(Burkholderia cepacia)、琼氏不动杆菌(Acinetobater jurii)、嗜麦芽窄食单孢菌(Stenotrophomonas maltophilia)和荧光假单胞菌(Pseudomonas sp.);真菌核糖体基因转录间隔区(ITS2)序列及同源性分析表明产脂肪酶真菌分别属于黑曲酶(Aspergillus niger)、白地酶(Galactomyces geotrichum)、解脂耶氏酵母(Yarrowia lipolytica)、丝孢酵母(Trichosporon guehoae)和假丝酵母(Candida sp.).研究结果表明,核糖体基因簇的DNA分析技术为从自然界分离、鉴定产脂肪酶菌种提供了一种快速有效的手段,为产脂肪酶微生物资源开发利用奠定了技术基础.

  13. ISOLATION AND CHARACTERIZATION OF RHIZOBIA AND PLANT GROWTH-PROMOTING RHIZOBACTERIA AND THEIR EFFECTS ON GROWTH OF RICE SEEDLINGS

    Directory of Open Access Journals (Sweden)

    K. Z. Tan

    2014-01-01

    Full Text Available Biofertilizer is a relatively safer, environmentally friendly and cost-effective approach as an alternative to reduce chemical fertilizer usage. The selection of bacterial strains with multiple beneficial characteristics are important to maximize the effectiveness on the host plant. Due to aforementioned interest, several Plant Growth-Promoting Rhizobacterial (PGPR and rhizobial strains were isolated from rice and legume roots, respectively, at four locations in Malaysia namely Universiti Putra Malaysia (UPM, Serdang, Selangor; Besut, Terengganu; Tunjung, Kelantan and Sik, Kedah. Bacterial isolations were undertaken to select the best isolates which exhibit multiple beneficial effects to the rice plant and a total of 205 bacterial strains were isolated and categorized as follows; 94 rhizospheric and 107 endophytic bacteria from rice roots, one rhizobial strain from soybean and three from Mimosa pudica. These isolates were screened for their abilities to fix N2 and solubilize phosphate; 52 were positive for both tests. The selected isolates were then tested for IAA production and other biochemical tests such as potassium solubilization, hydrolyzing enzymes (cellulase and pectinase and iron siderophore productions. Four isolates, namely UPMB19 (rhizospheric PGPR from Tunjung, Kelantan, UPMB20 (endophytic PGPR from Besut, Terengganu, UPMR30 (rhizobia from soybean and UPMR31 (rhizobia from Mimosa were selected for subsequent plant inoculation tests with UPMB10, a PGPR isolated from oil palm root, as the reference strain. Based on 16S rDNA gene sequencing, these bacterial strains were identified under several genera: Lysinibacillus, Alcaligenes, Bradyrhizobium, Rhizobium and Bacillus, respectively. Results of plant inoculation test indicated that UPMB19 significantly enhanced the seedling height at the early growth stage (7 days after transplanting, DAT which could be attributed to the higher N2

  14. Effect of Fe0 on acrylic fiber wastewater treatment in SBBR%Fe0对SBBR工艺处理腈纶废水性能影响

    Institute of Scientific and Technical Information of China (English)

    王亚娥; 李杰; 翟思媛; 冯娟娟

    2013-01-01

    In this paper,taking acrylic wastewater from the sewage treatment workshop of a chemical fiber company in Jilin as an object,the effect of Fe0 on acrylic wastewater treatment in SBBR reactor was studied via parallel comparison test.The test results showed that:(1) It could improve the start-up rate of SBBR reactor by adding Fe0.(2) While the reactor was at the stable operation stage,in 2 # reactor with added Fe0 and 1 # reactor without adding Fe0,the average removal rates of CODcr were 70.7% and 60.5% and the average removal rate of NH3-N were 60.6% and 13.5%,respectively.The average removal rate of CODcr and NH3-N were improved by 10.2% and 47.1% by adding Fe0.(3) The mixed liquor suspended solids (MLSS) and mixed liquor volatile suspended solids (MLVSS) in 2# reactor with added Fe0 were 1.60 and 1.35 times than those in 1# reactor,respectively.Adding Fe0 was beneficial to the growth of heterotrophic nitrification bacteria-Alcaligenes sp.,thus significantly improving NH3-N removal rate.%以吉林某化纤集团公司污水处理车间腈纶废水为对象,通过平行对比试验考察了Fe0对SBBR反应器处理腈纶废水性能的影响.结果表明:(1)添加Fe0可提高SBBR反应器的启动速率;(2)在反应器进入稳定运行阶段后,添加Fe0的2#反应器与对照组1 #反应器的CODCr平均去除率分别为70.7%和60.5%,NH3-N平均去除率分别为60.6%和13.5%,外加Fe0的SBBR反应器CODCr与NH3-N平均去除率分别提高了10.2%和47.1%;(3)添加Fe0的2#反应器的MLSS与MLVSS分别是对照组1#反应器的1.60倍和1.35倍.同时,添加Fe0更有利于异养型硝化菌——产碱杆菌属的生长,从而大大提高了反应器NH3-N的去除率.

  15. Study on Antimicrobial Activity of Alkaloids in Sophora flavescens and S.tonkinensis%苦参、山豆根生物碱及其总碱的抑菌活性研究

    Institute of Scientific and Technical Information of China (English)

    戴五好; 钱利武; 杨士友; 周国勤; 王丽丽

    2012-01-01

    目的:通过研究苦参、山豆根中生物碱及其总碱的体外抑菌活性,探讨苦参碱类化合物抑菌活性与结构之间的相关性.方法:采用牛津杯法,菌株37℃恒温培养24 h,检测苦参、山豆根中生物碱对7种菌株(金黄色葡萄球菌、铜绿假单胞菌、产碱假单胞菌、恶臭假单胞菌、肺炎链球菌、甲型溶血性链球菌、乙型溶血性链球菌)的抑制作用.结果:苦参、山豆根中生物碱对7种菌株均有抑制作用,其中氧化苦参碱、氧化槐果碱的抗菌作用较弱,槐定碱对甲型溶血性链球菌、乙型溶血性链球菌抗菌作用显著,抑菌圈分别达到(2.60 ±0.10),(2.53 ±0.15)cm.苦参总碱、山豆根总碱对乙型溶血性链球菌的抑菌圈分别为(2.43 ±0.21),(1.77±0.05)cm.结论:苦参、山豆根中生物碱的结构与抑菌活性有一定的联系,苦参、山豆根中生物碱可作为天然抗菌成分加以开发和利用.%Objective: By studying the alkaloids of Sophora flavescens and Sophora tonkinensis in vitro antibacterial activity, the relationship between the antibacterial activity and structure was examined. Method: Using Oxford cup method, strains had been cultured for 24 hours at a constant temperature of 37 ℃,the antimicrobial effect of alkaloids in S. Flavescens and S. Tonkinensis was studied in vitro against seven strains (Staphylococcus aureus, Pseudomonas aeruginosa, P. Alcaligenes, P. Putida, Streptococcus pneumoniae, a-hemolytic streptococcus, β-hemolytic streptococcus). Result; The experimental results indicated the alkaloids in 5. Flavescens and S. Tonkinensis showed the good inhibiting effect for seven strains, antibacterial activities of oxymatrine and oxysophocarpine were weak in vitro antibacterial activities of sophoridine showed remarkable effect for ctihemolytic streptococcus and β-hemolytic streptococcus, the inhibition zones by sophoridine were (2. 60 ±0. 10) , (2. 53 ±0. 15) cm to a-hemolytic streptococcus and

  16. Bioavailability enhanced rhizosphere remediation of petroleum hydrocarbon contaminated soil

    International Nuclear Information System (INIS)

    contain were analyzed by gas chromatography method. Four bioassays were used to measure toxicity during bio-remediation of soil contaminated by petroleum hydrocarbons: Microtox(R) test, SOSchromotest, lettuce seed germination and sheep red blood cell (RBS) hemolysis assay. Rhizosphere remediation was found to be effective for removal of polycyclic aromatic hydrocarbons (PAHs), total petroleum hydrocarbons (TPHs) from soil with the use of alfalfa inoculated by the Pseudomonas stutzeri MEV-S1 strain (RU 2228952 patent) and oats inoculated by the Pseudomonas alcaligenes MEV strain (RU 2228953 patent) in vegetation and field experiments. The reduction of the TPH and PAH concentrations in soil was accompanied by the reduction of integral toxicity and genotoxicity, evaluated by bio-testing. It is conceivable, therefore, that a possible way to optimize petroleum hydrocarbons phyto-remediation is the use of selected plants and microbial inoculants with specific chemotactic affinities and bio-surfactant production. The proposed technology for soil bio-remediation with the use of integrated plant-microbial system is ecologically and toxicologically safe and economically attractive

  17. Screening and Identification of a Bacterial Strain Produced by Curdlan and Research on Its Culture Conditions%可得然多糖生产菌株的筛选、鉴定及其培养条件的研究

    Institute of Scientific and Technical Information of China (English)

    滕继涛; 崔建东

    2013-01-01

    可得然多糖是一种可溶性多糖,是由葡萄糖残基以β-1,3糖苷键连接组成的直链无分支葡聚糖.这种多糖被广泛应用在食品行业中.聚合度的不同导致这种多糖具有不同的理化性质.因此发现具有合成可得然多糖的不同微生物资源是非常重要的,但到目前为止,只报道了粪产碱杆菌和农杆菌具有合成这种多糖的能力.研究从土壤中筛选到一株能合成可得然多糖的细菌,通过16S rDNA扩增、序列比对,发现该菌株(Cu-4)是革兰氏阳性的假单胞菌属(Pseudomonas sp.).通过对影响该菌株合成可得然多糖的因素研究,发现葡萄糖是最适碳源,酵母粉是最适氮源,培养基初始最适pH为7.0.文章首次报道了Pseudomonas sp.也能合成可得然多糖.%Curdlan is a soluble polysaccharide,composed of β-1,3-linked glucose residues.Curdlan and its derivatives have potential application value in food industries.Hence,polymer has different physicochemical properties with different degrees of polymerization.It is important to find different microbial resources which can synthetize curdlan polysaccharide.However,so far only Alcaligenes and Agrobacterium species have been reported to produce curdlan.In this study,a bacterium which can produce extracellular curdlan is isolated from soil samples on the basis of 16S rDNA gene sequencing.The strain Cur-4 is a gram-positive Pseudomonas sp.In addition,the factors affecting the systhesis of curdlan ar investigated.It is observed that glucose is the most suitable carbon source for curdlan production by Cur-4 strain.The maximum curdlan production is achieved when yeast extract is used as nitrogen source.Furthermore,it is also found that maximum curdlan production is obtained when initial pH is at 7.0.To the best of our knowledge,this is the first report on curdlan production by Pseudomonas sp..

  18. Microbiological analyses of water from hemodialysis services in São Luís, Maranhão, Brazil Análises microbiológicas da água dos serviços de hemodiálise em São Luís, Maranhão, Brasil

    Directory of Open Access Journals (Sweden)

    José de Ribamar Oliveira Lima

    2005-06-01

    Full Text Available Rigorous control of water quality in hemodialysis services is extremely important in order to guarantee a better quality of life of the patients submitted to this treatment. The lack of adequate water monitoring has caused the death of various patients in the past. The objective of the present study was to determine the physicochemical and bacteriological characteristics of water used by hemodialysis services in hospitals of the city of São Luís, Maranhão, Brazil. Bacteriological analyses included the membrane filter method for the determination of total coliform bacteria, the Cult-Dipcombi-TTC-agar method for heterotrophic bacteria and the limulus amebocyte lysate method for the determination of endotoxins. Eighteen water samples obtained from three hospital units, six samples per hemodialysis service, collected directly at the pre- and post-treatment points, were analyzed. Microorganisms were detected in the water used by the hemodialysis services in two of the three hospital units (B and C studied. No contamination with heterotrophic bacteria was observed in pretreatment samples, while endotoxin production was detected in 100% of the samples. In post-treatment samples, heterotrophic bacteria were detected in 66.6% of the samples and endotoxins in 33.3%. The microorganisms identified in unit B were Burkholderia cepacia, Alcaligenes xylosoxidans,Pseudomonas aeruginosa and Stenotrophomonas maltophilia In unit C Flavimonas oryzihabitans,Ralstonia pickettii and Burkholderia cepacia were identified. A significant correlation was observed between the presence of endotoxins and the physicochemical characteristics of water such as turbidity and conductivity. These data indicate that two of the three hospital units studied should revise the control of their hemodialysis water system.A necessidade de um controle rigoroso no serviço de hemodiálise tornou-se algo de extrema importância para garantir uma melhor qualidade de vida aos pacientes

  19. 济南市1300例儿童呼吸道疾病流行病学分析%Epidemiological investigation on respiratory diseases in 1 300 children, in Jinan, Shandong

    Institute of Scientific and Technical Information of China (English)

    张昕婷; 张俊英; 曹爱华

    2014-01-01

    Objective To analyze the characteristics of respiratory diseases and to provide scientific basis for developing relevant control measures.Methods 1 300 children with respiratory diseases were treated in hospitals,from Jan.2013 to May 2014,in the city of Jinan.Characteristics of respiratory diseases were analyzed.Results The distribution of respiratory diseases in children appeared as:373 cases of pneumonia (28.7%),3 cases of pulmonary tuberculosis (0.2%),467 cases of acute bronchitis (35.9%),102 cases of asthma (7.8%),and 355 cases of upper respiratory tract infection (27.3%).The upper respiratory tract infection contained 168 cases of tonsillitis (12.9%),91 cases of pharyngitis (7.0%),52 cases of laryngitis (4.0%) and 44 cases of iaryngopharyngitis (3.4%).The age distribution of cases with children respiratory diseases appeared as:71 cases < 1 years old (5.5%),385 cases as 1-2 years old (29.6%),534 cases as 3-6 years old (41.1%),258 cases as 7-12 years old (19.8%) and 52 cases as >13 years old (4.0%).The seasonal distribution of children respiratory diseases appeared as:364 cases in Spring (28.0%),163 cases in summer (12.5%),315 cases in autumn (24.2%) and 458 cases in winter (35.2%).Regional distribution of children respiratory diseases appeared as:516 cases in urban area (39.7%),225 cases in suburb (17.3%),376 cases in townships (28.9%) and 183 in villages (14.1%).725 strains were isolated and identified that containing 349 strains (48.1%) of Mycoplasma pneumoniae,136 strains (18.8%) of Haemophilus influenza,103 strains (14.2%) of Streptococcus pneumoniae,82 strains (11.3%) of Klebsiella pneumoniae,38 strains (5.2%) of Acinetobacter baumannii,35 strains(4.8%) of Enterobacter cloacae,22 strains (3.0%) of Streptococcus pyogenes,17 strains (2.3%) of Alcaligenes,16 strains (2.2% of Candida albicans) and 9 strains (1.2%) of Flavobacterium indologenes.1 288 cases (99.1%) were cured.Conclusion The