Genotyping and annotation of Affymetrix SNP arrays

DEFF Research Database (Denmark)

Lamy, Philippe; Andersen, Claus Lindbjerg; Wikman, Friedrik

2006-01-01

it is indicated that our method is likely to be correct in majority of these cases. In addition, we demonstrate that our method produces more SNPs that are in concordance with Hardy-Weinberg equilibrium than the method by Affymetrix. Finally, we have validated our method on HapMap data and shown...

Characterization of a Wheat Breeders' Array suitable for high-throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum).

Science.gov (United States)

Allen, Alexandra M; Winfield, Mark O; Burridge, Amanda J; Downie, Rowena C; Benbow, Harriet R; Barker, Gary L A; Wilkinson, Paul A; Coghill, Jane; Waterfall, Christy; Davassi, Alessandro; Scopes, Geoff; Pirani, Ali; Webster, Teresa; Brew, Fiona; Bloor, Claire; Griffiths, Simon; Bentley, Alison R; Alda, Mark; Jack, Peter; Phillips, Andrew L; Edwards, Keith J

2017-03-01

Targeted selection and inbreeding have resulted in a lack of genetic diversity in elite hexaploid bread wheat accessions. Reduced diversity can be a limiting factor in the breeding of high yielding varieties and crucially can mean reduced resilience in the face of changing climate and resource pressures. Recent technological advances have enabled the development of molecular markers for use in the assessment and utilization of genetic diversity in hexaploid wheat. Starting with a large collection of 819 571 previously characterized wheat markers, here we describe the identification of 35 143 single nucleotide polymorphism-based markers, which are highly suited to the genotyping of elite hexaploid wheat accessions. To assess their suitability, the markers have been validated using a commercial high-density Affymetrix Axiom ® genotyping array (the Wheat Breeders' Array), in a high-throughput 384 microplate configuration, to characterize a diverse global collection of wheat accessions including landraces and elite lines derived from commercial breeding communities. We demonstrate that the Wheat Breeders' Array is also suitable for generating high-density genetic maps of previously uncharacterized populations and for characterizing novel genetic diversity produced by mutagenesis. To facilitate the use of the array by the wheat community, the markers, the associated sequence and the genotype information have been made available through the interactive web site 'CerealsDB'. © 2016 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

Differential gene expression in anterior pituitary glands from anestrous and cycling postpartum beef cows

Science.gov (United States)

Oligionucleotide microarrays (GeneChip Bovine Genome Arrays, Affymetrix Inc., Santa Clara, CA) were used to evaluate gene expression profiles in anterior pituitary glands collected from 4 anestrous and 4 cycling postpartum primiparous beef cows to provide insight into genes associated with transitio...

Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome

NARCIS (Netherlands)

Judelson, H.S.; Ah-Fong, A.M.V.; Aux, G.; Avrova, A.O.; Bruce, C.; Cakir, C.; Cunha, da L.; Grenville-Briggs, L.; Latijnhouwers, M.; Ligterink, W.; Meijer, H.J.G.; Roberts, S.; Thurber, C.S.; Whisson, S.C.; Birch, P.R.J.; Govers, F.; Kamoun, S.; West, van P.; Windass, J.

2008-01-01

Much of the pathogenic success of Phytophthora infestans, the potato and tomato late blight agent, relies on its ability to generate from mycelia large amounts of sporangia, which release zoospores that encyst and form infection structures. To better understand these stages, Affymetrix GeneChips

Arabidopsis transcriptional responses differentiate between O3 and herbicides

Science.gov (United States)

Using published data based on Affymetrix ATH1 Gene-Chips we characterized the transcriptional response of Arabidopsis thaliana Columbia to O3 and a few other major environmental stresses including oxidative stress . A set of 101 markers could be extracted which provided a compo...

Hepatic gene expression profiling using GeneChips in zebrafish exposed to 17{alpha}-methyldihydrotestosterone

Energy Technology Data Exchange (ETDEWEB)

Hoffmann, J.L.; Thomason, R.G.; Lee, D.M.; Brill, J.L.; Price, B.B.; Carr, G.J. [Miami Valley Innovation Center, Procter and Gamble Company, P.O. Box 538707, Cincinnati, OH 45253-8707 (United States); Versteeg, D.J. [Miami Valley Innovation Center, Procter and Gamble Company, P.O. Box 538707, Cincinnati, OH 45253-8707 (United States)], E-mail: versteeg.dj@pg.com

2008-04-28

Concentration and time-dependent changes in hepatic gene expression were examined in adult, female zebrafish (Danio rerio) exposed to 0, 0.1, 0.7, 4.9 {mu}g/L of a model androgen, 17{alpha}-methyldihydrotestosterone (MDHT). At 24 and 168 h, fish were sacrificed and liver was extracted for gene expression analysis using custom Affymetrix GeneChip Zebrafish Genome Microarrays. In an effort to link gene expression changes to higher levels of biological organization, blood was collected for measurement of plasma steroid hormones (17{beta}-estradiol (E2), testosterone (T)) and vitellogenin (VTG) using ELISA. Body and ovary weight were also measured. A significant reduction in E2 occurred at 24 h (0.7 and 4.9 {mu}g/L) and 168 h (4.9 {mu}g/L) following MDHT exposure. In contrast, T was significantly increased at 24 h (4.9 {mu}g/L) and 168 h (0.1, 0.7, 4.9 {mu}g/L). 171 and 575 genes were significantly affected in a concentration-dependent manner at either 24 or 168 h by MDHT exposure at p {<=} 0.001 and p {<=} 0.01, respectively. Genes involved in retinoic acid metabolism (e.g. aldehyde dehydrogenase 8, member A1; retinol dehydrogenase 12), steroid biosynthesis and metabolism (e.g. hydroxysteroid (11{beta}) dehydrogenase 2; hydroxy-delta-5-steroid dehydrogenase, 3 beta-), hormone transport (e.g. sex hormone binding globulin), and regulation of cell growth and proliferation (e.g. N-myc downstream regulated gene 1; spermidinespermine N(1)-acetyltransferase) were affected by MDHT exposure. In this study, we identified genes involved in a variety of biological processes that have the potential to be used as markers of exposure to androgenic substances. Genes identified in this study provide information on the potential mode of action of strong androgens in female fish. In addition, when used for screening of EDC's, these genes may also serve as sensitive markers of exposure to androgenic compounds.

OpenADAM: an open source genome-wide association data management system for Affymetrix SNP arrays

Directory of Open Access Journals (Sweden)

Sham P C

2008-12-01

Full Text Available Abstract Background Large scale genome-wide association studies have become popular since the introduction of high throughput genotyping platforms. Efficient management of the vast array of data generated poses many challenges. Description We have developed an open source web-based data management system for the large amount of genotype data generated from the Affymetrix GeneChip® Mapping Array and Affymetrix Genome-Wide Human SNP Array platforms. The database supports genotype calling using DM, BRLMM, BRLMM-P or Birdseed algorithms provided by the Affymetrix Power Tools. The genotype and corresponding pedigree data are stored in a relational database for efficient downstream data manipulation and analysis, such as calculation of allele and genotype frequencies, sample identity checking, and export of genotype data in various file formats for analysis using commonly-available software. A novel method for genotyping error estimation is implemented using linkage disequilibrium information from the HapMap project. All functionalities are accessible via a web-based user interface. Conclusion OpenADAM provides an open source database system for management of Affymetrix genome-wide association SNP data.

Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

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Langridge Peter

2006-10-01

Full Text Available Abstract Background Our understanding of the mechanisms that govern the cellular process of meiosis is limited in higher plants with polyploid genomes. Bread wheat is an allohexaploid that behaves as a diploid during meiosis. Chromosome pairing is restricted to homologous chromosomes despite the presence of homoeologues in the nucleus. The importance of wheat as a crop and the extensive use of wild wheat relatives in breeding programs has prompted many years of cytogenetic and genetic research to develop an understanding of the control of chromosome pairing and recombination. The rapid advance of biochemical and molecular information on meiosis in model organisms such as yeast provides new opportunities to investigate the molecular basis of chromosome pairing control in wheat. However, building the link between the model and wheat requires points of data contact. Results We report here a large-scale transcriptomics study using the Affymetrix wheat GeneChip® aimed at providing this link between wheat and model systems and at identifying early meiotic genes. Analysis of the microarray data identified 1,350 transcripts temporally-regulated during the early stages of meiosis. Expression profiles with annotated transcript functions including chromatin condensation, synaptonemal complex formation, recombination and fertility were identified. From the 1,350 transcripts, 30 displayed at least an eight-fold expression change between and including pre-meiosis and telophase II, with more than 50% of these having no similarities to known sequences in NCBI and TIGR databases. Conclusion This resource is now available to support research into the molecular basis of pairing and recombination control in the complex polyploid, wheat.

Transcriptome analysis reveals key differentially expressed genes involved in wheat grain development

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Yonglong Yu

2016-04-01

Full Text Available Wheat seed development is an important physiological process of seed maturation and directly affects wheat yield and quality. In this study, we performed dynamic transcriptome microarray analysis of an elite Chinese bread wheat cultivar (Jimai 20 during grain development using the GeneChip Wheat Genome Array. Grain morphology and scanning electron microscope observations showed that the period of 11–15 days post-anthesis (DPA was a key stage for the synthesis and accumulation of seed starch. Genome-wide transcriptional profiling and significance analysis of microarrays revealed that the period from 11 to 15 DPA was more important than the 15–20 DPA stage for the synthesis and accumulation of nutritive reserves. Series test of cluster analysis of differential genes revealed five statistically significant gene expression profiles. Gene ontology annotation and enrichment analysis gave further information about differentially expressed genes, and MapMan analysis revealed expression changes within functional groups during seed development. Metabolic pathway network analysis showed that major and minor metabolic pathways regulate one another to ensure regular seed development and nutritive reserve accumulation. We performed gene co-expression network analysis to identify genes that play vital roles in seed development and identified several key genes involved in important metabolic pathways. The transcriptional expression of eight key genes involved in starch and protein synthesis and stress defense was further validated by qRT-PCR. Our results provide new insight into the molecular mechanisms of wheat seed development and the determinants of yield and quality.

Nanobarcode gene expression monitoring system for potential miniaturized space applications

Science.gov (United States)

Ruan, Weiming; Eastman, P. Scott; Cooke, Patrick A.; Park, Jennifer S.; Chu, Julia S. F.; Gray, Joe W.; Li, Song; Chen, Fanqing Frank

Manned mission to space has been threatened by various cosmos risks including radiation, mirogravity, vacuum, confinement, etc., which may cause genetic variations of astronauts and eventually lead to damages of their health. Thus, the development of small biomedical devices, which can monitor astronaut gene expression changes, is useful for future long-term space missions. Using magnetic microbeads packed with nanocrystal quantum dots at controlled ratios, we were able to generate highly multiplexed nanobarcodes, which can encode a flexible panel of genes. Also, by using a reporter quantum dot, this nanobarcode platform can monitor and quantify gene expression level with improved speed and sensitivity. As a comparison, we studied TGF-β1 induced transcription changes in human bone marrow mesenchymal stem cells with both the nanobarcode microbead system and the Affymetrix GeneChip ® HTA system, which is currently considered as the industrial standard. Though using only 1/20 of the sample RNA, the nanobarcode system showed sensitivity equivalent to Affymetrix GeneChip ® system. The coefficient of variation, dynamic range, and accuracy of the nanobarcodes measurement is equivalent to that of the GeneChip ® HTA system. Therefore, this newly invented nanobarcode microbead platform is thought to be sensitive, flexible, cost-effective and accurate in a level equivalent to the conventional methods. As an extension of the use of this new platform, spacecrafts may carry this miniaturized system as a diagnostic tool for the astronauts.

Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.).

Science.gov (United States)

Stoffel, Kevin; van Leeuwen, Hans; Kozik, Alexander; Caldwell, David; Ashrafi, Hamid; Cui, Xinping; Tan, Xiaoping; Hill, Theresa; Reyes-Chin-Wo, Sebastian; Truco, Maria-Jose; Michelmore, Richard W; Van Deynze, Allen

2012-05-14

High-resolution genetic maps are needed in many crops to help characterize the genetic diversity that determines agriculturally important traits. Hybridization to microarrays to detect single feature polymorphisms is a powerful technique for marker discovery and genotyping because of its highly parallel nature. However, microarrays designed for gene expression analysis rarely provide sufficient gene coverage for optimal detection of nucleotide polymorphisms, which limits utility in species with low rates of polymorphism such as lettuce (Lactuca sativa). We developed a 6.5 million feature Affymetrix GeneChip® for efficient polymorphism discovery and genotyping, as well as for analysis of gene expression in lettuce. Probes on the microarray were designed from 26,809 unigenes from cultivated lettuce and an additional 8,819 unigenes from four related species (L. serriola, L. saligna, L. virosa and L. perennis). Where possible, probes were tiled with a 2 bp stagger, alternating on each DNA strand; providing an average of 187 probes covering approximately 600 bp for each of over 35,000 unigenes; resulting in up to 13 fold redundancy in coverage per nucleotide. We developed protocols for hybridization of genomic DNA to the GeneChip® and refined custom algorithms that utilized coverage from multiple, high quality probes to detect single position polymorphisms in 2 bp sliding windows across each unigene. This allowed us to detect greater than 18,000 polymorphisms between the parental lines of our core mapping population, as well as numerous polymorphisms between cultivated lettuce and wild species in the lettuce genepool. Using marker data from our diversity panel comprised of 52 accessions from the five species listed above, we were able to separate accessions by species using both phylogenetic and principal component analyses. Additionally, we estimated the diversity between different types of cultivated lettuce and distinguished morphological types. By hybridizing

DMET-analyzer: automatic analysis of Affymetrix DMET data.

Science.gov (United States)

Guzzi, Pietro Hiram; Agapito, Giuseppe; Di Martino, Maria Teresa; Arbitrio, Mariamena; Tassone, Pierfrancesco; Tagliaferri, Pierosandro; Cannataro, Mario

2012-10-05

Clinical Bioinformatics is currently growing and is based on the integration of clinical and omics data aiming at the development of personalized medicine. Thus the introduction of novel technologies able to investigate the relationship among clinical states and biological machineries may help the development of this field. For instance the Affymetrix DMET platform (drug metabolism enzymes and transporters) is able to study the relationship among the variation of the genome of patients and drug metabolism, detecting SNPs (Single Nucleotide Polymorphism) on genes related to drug metabolism. This may allow for instance to find genetic variants in patients which present different drug responses, in pharmacogenomics and clinical studies. Despite this, there is currently a lack in the development of open-source algorithms and tools for the analysis of DMET data. Existing software tools for DMET data generally allow only the preprocessing of binary data (e.g. the DMET-Console provided by Affymetrix) and simple data analysis operations, but do not allow to test the association of the presence of SNPs with the response to drugs. We developed DMET-Analyzer a tool for the automatic association analysis among the variation of the patient genomes and the clinical conditions of patients, i.e. the different response to drugs. The proposed system allows: (i) to automatize the workflow of analysis of DMET-SNP data avoiding the use of multiple tools; (ii) the automatic annotation of DMET-SNP data and the search in existing databases of SNPs (e.g. dbSNP), (iii) the association of SNP with pathway through the search in PharmaGKB, a major knowledge base for pharmacogenomic studies. DMET-Analyzer has a simple graphical user interface that allows users (doctors/biologists) to upload and analyse DMET files produced by Affymetrix DMET-Console in an interactive way. The effectiveness and easy use of DMET Analyzer is demonstrated through different case studies regarding the analysis of

DMET-Analyzer: automatic analysis of Affymetrix DMET Data

Directory of Open Access Journals (Sweden)

Guzzi Pietro

2012-10-01

Full Text Available Abstract Background Clinical Bioinformatics is currently growing and is based on the integration of clinical and omics data aiming at the development of personalized medicine. Thus the introduction of novel technologies able to investigate the relationship among clinical states and biological machineries may help the development of this field. For instance the Affymetrix DMET platform (drug metabolism enzymes and transporters is able to study the relationship among the variation of the genome of patients and drug metabolism, detecting SNPs (Single Nucleotide Polymorphism on genes related to drug metabolism. This may allow for instance to find genetic variants in patients which present different drug responses, in pharmacogenomics and clinical studies. Despite this, there is currently a lack in the development of open-source algorithms and tools for the analysis of DMET data. Existing software tools for DMET data generally allow only the preprocessing of binary data (e.g. the DMET-Console provided by Affymetrix and simple data analysis operations, but do not allow to test the association of the presence of SNPs with the response to drugs. Results We developed DMET-Analyzer a tool for the automatic association analysis among the variation of the patient genomes and the clinical conditions of patients, i.e. the different response to drugs. The proposed system allows: (i to automatize the workflow of analysis of DMET-SNP data avoiding the use of multiple tools; (ii the automatic annotation of DMET-SNP data and the search in existing databases of SNPs (e.g. dbSNP, (iii the association of SNP with pathway through the search in PharmaGKB, a major knowledge base for pharmacogenomic studies. DMET-Analyzer has a simple graphical user interface that allows users (doctors/biologists to upload and analyse DMET files produced by Affymetrix DMET-Console in an interactive way. The effectiveness and easy use of DMET Analyzer is demonstrated through different

Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.

Directory of Open Access Journals (Sweden)

Stoffel Kevin

2012-05-01

Full Text Available Abstract Background High-resolution genetic maps are needed in many crops to help characterize the genetic diversity that determines agriculturally important traits. Hybridization to microarrays to detect single feature polymorphisms is a powerful technique for marker discovery and genotyping because of its highly parallel nature. However, microarrays designed for gene expression analysis rarely provide sufficient gene coverage for optimal detection of nucleotide polymorphisms, which limits utility in species with low rates of polymorphism such as lettuce (Lactuca sativa. Results We developed a 6.5 million feature Affymetrix GeneChip® for efficient polymorphism discovery and genotyping, as well as for analysis of gene expression in lettuce. Probes on the microarray were designed from 26,809 unigenes from cultivated lettuce and an additional 8,819 unigenes from four related species (L. serriola, L. saligna, L. virosa and L. perennis. Where possible, probes were tiled with a 2 bp stagger, alternating on each DNA strand; providing an average of 187 probes covering approximately 600 bp for each of over 35,000 unigenes; resulting in up to 13 fold redundancy in coverage per nucleotide. We developed protocols for hybridization of genomic DNA to the GeneChip® and refined custom algorithms that utilized coverage from multiple, high quality probes to detect single position polymorphisms in 2 bp sliding windows across each unigene. This allowed us to detect greater than 18,000 polymorphisms between the parental lines of our core mapping population, as well as numerous polymorphisms between cultivated lettuce and wild species in the lettuce genepool. Using marker data from our diversity panel comprised of 52 accessions from the five species listed above, we were able to separate accessions by species using both phylogenetic and principal component analyses. Additionally, we estimated the diversity between different types of cultivated lettuce and

Imputing amino acid polymorphisms in human leukocyte antigens.

Directory of Open Access Journals (Sweden)

Xiaoming Jia

Full Text Available DNA sequence variation within human leukocyte antigen (HLA genes mediate susceptibility to a wide range of human diseases. The complex genetic structure of the major histocompatibility complex (MHC makes it difficult, however, to collect genotyping data in large cohorts. Long-range linkage disequilibrium between HLA loci and SNP markers across the major histocompatibility complex (MHC region offers an alternative approach through imputation to interrogate HLA variation in existing GWAS data sets. Here we describe a computational strategy, SNP2HLA, to impute classical alleles and amino acid polymorphisms at class I (HLA-A, -B, -C and class II (-DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 loci. To characterize performance of SNP2HLA, we constructed two European ancestry reference panels, one based on data collected in HapMap-CEPH pedigrees (90 individuals and another based on data collected by the Type 1 Diabetes Genetics Consortium (T1DGC, 5,225 individuals. We imputed HLA alleles in an independent data set from the British 1958 Birth Cohort (N = 918 with gold standard four-digit HLA types and SNPs genotyped using the Affymetrix GeneChip 500 K and Illumina Immunochip microarrays. We demonstrate that the sample size of the reference panel, rather than SNP density of the genotyping platform, is critical to achieve high imputation accuracy. Using the larger T1DGC reference panel, the average accuracy at four-digit resolution is 94.7% using the low-density Affymetrix GeneChip 500 K, and 96.7% using the high-density Illumina Immunochip. For amino acid polymorphisms within HLA genes, we achieve 98.6% and 99.3% accuracy using the Affymetrix GeneChip 500 K and Illumina Immunochip, respectively. Finally, we demonstrate how imputation and association testing at amino acid resolution can facilitate fine-mapping of primary MHC association signals, giving a specific example from type 1 diabetes.

Oxygenase-Catalyzed Biodegradation of Emerging Water Contaminants: 1,4-Dioxane and N-Nitrosodimethylamine

Science.gov (United States)

2012-02-01

and treat operations (54, 144). Aitchison et al. (1) have reported phytoremediation of dioxane by hybrid poplar trees. In their laboratory studies...world, the microsomal fractions of tulip bulbs (145), spinach, and lettuce (29) had all been shown to metabolize NDMA. In addition, many higher...cDNA was synthesized, fragmented, labeled, and hybridized to arrays according to the protocols outlined in section 3 of the Affymetrix GeneChip

GeneChip microarrays-signal intensities, RNA concentrations and probe sequences

International Nuclear Information System (INIS)

Binder, Hans; Preibisch, Stephan

2006-01-01

GeneChip microarrays consist of hundreds of thousands of oligonucleotide probes. The transformation of their signal intensities into RNA transcript concentrations requires the knowledge of the response function of the measuring device. We analysed the 'apparatus' function of perfect match (PM) and mismatched (MM) oligonucleotide probes of GeneChip microarrays after changes of the target concentration using the results of a spiked-in experiment. In agreement with previous studies we found that a competitive two-species Langmuir-adsorption model describes the probe intensities well. Each PM and MM probe is characterized by two hybridization constants which specify the propensity of the probe to bind specific and non-specific transcripts. The affinity for non-specific hybridization is on average equal for PM and MM. The purine-pyrimidine asymmetry of base pair interaction strengths, however, causes a characteristic PM-MM intensity difference, the sign of which depends on the middle base of the probe. The affinity for specific hybridization of the PM exceeds that of the MM on average by nearly one order of magnitude because the central mismatched base only weakly contributes to the stability of the probe/target duplexes. For the first time we differentiate between the free energy parameters related to the 64 possible middle-triples of DNA/RNA oligomer duplexes with a central Watson-Crick pairing and a central mismatched pairing. Both the PM and MM probes respond to the concentration of specific transcripts, which can be estimated from the PM and MM probe intensities using the Langmuir-model. The analysis of the PM-MM intensity difference provides at least no loss of accuracy and precision of the estimated concentration compared with the PM-only estimates which in turn outperform the MM-only estimates. The results show that the processing of the PM-MM intensity difference requires the consideration of a background term due to non-specific hybridization, which is

Alternative mapping of probes to genes for Affymetrix chips

DEFF Research Database (Denmark)

Gautier, Laurent; Møller, M.; Friis-Hansen, L.

2004-01-01

transcripts: the NCBI RefSeq database. We also built mappings and used them in place of the original probe to genes associations provided by the manufacturer of the arrays. Results: In a large number of cases, 36%, the probes matching a reference sequence were consistent with the grouping of probes...... by the manufacturer of the chips. For the remaining cases there were discrepancies and we show how that can affect the analysis of data. Conclusions: While the probes on Affymetrix arrays remain the same for several years, the biological knowledge concerning the genomic sequences evolves rapidly. Using up...

Expression profiling of human renal carcinomas with functional taxonomic analysis

Science.gov (United States)

2002-01-01

Background Molecular characterization has contributed to the understanding of the inception, progression, treatment and prognosis of cancer. Nucleic acid array-based technologies extend molecular characterization of tumors to thousands of gene products. To effectively discriminate between tumor sub-types, reliable laboratory techniques and analytic methods are required. Results We derived mRNA expression profiles from 21 human tissue samples (eight normal kidneys and 13 kidney tumors) and two pooled samples using the Affymetrix GeneChip platform. A panel of ten clustering algorithms combined with four data pre-processing methods identified a consensus cluster dendrogram in 18 of 40 analyses and of these 16 used a logarithmic transformation. Within the consensus dendrogram the expression profiles of the samples grouped according to tissue type; clear cell and chromophobe carcinomas displayed distinctly different gene expression patterns. By using a rigorous statistical selection based method we identified 355 genes that showed significant (p Matrix Organization and Adhesion. Conclusions Affymetrix GeneChip profiling differentiated clear cell and chromophobe carcinomas from one another and from normal kidney cortex. Clustering methods that used logarithmic transformation of data sets produced dendrograms consistent with the sample biology. Functional taxonomy provided a practical approach to the interpretation of gene expression data. PMID:12356337

Expression profiling of human renal carcinomas with functional taxonomic analysis

Directory of Open Access Journals (Sweden)

Madore Steven J

2002-09-01

Full Text Available Abstract Background Molecular characterization has contributed to the understanding of the inception, progression, treatment and prognosis of cancer. Nucleic acid array-based technologies extend molecular characterization of tumors to thousands of gene products. To effectively discriminate between tumor sub-types, reliable laboratory techniques and analytic methods are required. Results We derived mRNA expression profiles from 21 human tissue samples (eight normal kidneys and 13 kidney tumors and two pooled samples using the Affymetrix GeneChip platform. A panel of ten clustering algorithms combined with four data pre-processing methods identified a consensus cluster dendrogram in 18 of 40 analyses and of these 16 used a logarithmic transformation. Within the consensus dendrogram the expression profiles of the samples grouped according to tissue type; clear cell and chromophobe carcinomas displayed distinctly different gene expression patterns. By using a rigorous statistical selection based method we identified 355 genes that showed significant (p Conclusions Affymetrix GeneChip profiling differentiated clear cell and chromophobe carcinomas from one another and from normal kidney cortex. Clustering methods that used logarithmic transformation of data sets produced dendrograms consistent with the sample biology. Functional taxonomy provided a practical approach to the interpretation of gene expression data.

Micro-Analyzer: automatic preprocessing of Affymetrix microarray data.

Science.gov (United States)

Guzzi, Pietro Hiram; Cannataro, Mario

2013-08-01

A current trend in genomics is the investigation of the cell mechanism using different technologies, in order to explain the relationship among genes, molecular processes and diseases. For instance, the combined use of gene-expression arrays and genomic arrays has been demonstrated as an effective instrument in clinical practice. Consequently, in a single experiment different kind of microarrays may be used, resulting in the production of different types of binary data (images and textual raw data). The analysis of microarray data requires an initial preprocessing phase, that makes raw data suitable for use on existing analysis platforms, such as the TIGR M4 (TM4) Suite. An additional challenge to be faced by emerging data analysis platforms is the ability to treat in a combined way those different microarray formats coupled with clinical data. In fact, resulting integrated data may include both numerical and symbolic data (e.g. gene expression and SNPs regarding molecular data), as well as temporal data (e.g. the response to a drug, time to progression and survival rate), regarding clinical data. Raw data preprocessing is a crucial step in analysis but is often performed in a manual and error prone way using different software tools. Thus novel, platform independent, and possibly open source tools enabling the semi-automatic preprocessing and annotation of different microarray data are needed. The paper presents Micro-Analyzer (Microarray Analyzer), a cross-platform tool for the automatic normalization, summarization and annotation of Affymetrix gene expression and SNP binary data. It represents the evolution of the μ-CS tool, extending the preprocessing to SNP arrays that were not allowed in μ-CS. The Micro-Analyzer is provided as a Java standalone tool and enables users to read, preprocess and analyse binary microarray data (gene expression and SNPs) by invoking TM4 platform. It avoids: (i) the manual invocation of external tools (e.g. the Affymetrix Power

Systems Level Analysis and Identification of Pathways and Networks Associated with Liver Fibrosis

Science.gov (United States)

2014-11-07

Affymetrix GeneChip Rat Genome 230 2.0 Arrays. In GSE13747, liver fibrosis was produced by bile duct ligation [60]. Six replicates of liver fibrosis...fibrosis produced by bile duct ligation. B) GSE6929 represents sunitinib (SU11248) treatment in liver cirrhosis. doi:10.1371/journal.pone.0112193...respectively. In the study associated with the GSE13747 dataset, liver fibrosis was induced using bile duct ligation. We observed the predicted positive

Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life

OpenAIRE

Benjamin Rey; Cyril Dégletagne; Claude Duchamp

2016-01-01

In this article, we present differentially expressed gene profiles in the pectoralis muscle of wild juvenile king penguins that were either naturally acclimated to cold marine environment or experimentally immersed in cold water as compared with penguin juveniles that never experienced cold water immersion. Transcriptomic data were obtained by hybridizing penguins total cDNA on Affymetrix GeneChip Chicken Genome arrays and analyzed using maxRS algorithm, ?Transcriptome analysis in non-model s...

Genotype-dependent Burst of Transposable Element Expression in Crowns of Hexaploid Wheat (Triticum aestivum L. during Cold Acclimation

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Debbie Laudencia-Chingcuanco

2012-01-01

Full Text Available The expression of 1,613 transposable elements (TEs represented in the Affymetrix Wheat Genome Chip was examined during cold treatment in crowns of four hexaploid wheat genotypes that vary in tolerance to cold and in flowering time. The TE expression profiles showed a constant level of expression throughout the experiment in three of the genotypes. In winter Norstar, the most cold-hardy of the four genotypes, a subset of the TEs showed a burst of expression after vernalization saturation was achieved. About 47% of the TEs were expressed, and both Class I (retrotransposons and Class II (DNA transposons types were well represented. Gypsy and Copia were the most represented among the retrotransposons while CACTA and Mariner were the most represented DNA transposons. The data suggests that the Vrn-A1 region plays a role in the stage-specific induction of TE expression in this genotype.

High-throughput identification of ionizing radiation-sensitive plant genes and development of radiation indicator plant and radiation sensing Genechip

International Nuclear Information System (INIS)

Kim, Dong Sub; Kim, Jinbaek; Ha, Bokeun; Kim, Sang Hoon; Kim, Sunhee

2013-05-01

Physiological analysis of monocot model plant (rice) in response to ionizing radiation (cosmic-ray, gamma-ray, Ion beam). - Identification of antioxidant characters through cytochemical analysis. - Comparison of antioxidant activities in response to ionizing irradiation. - Evaluation of anthocyanin quantity in response to ionizing irradiation. Ionization energy response gene family analysis via bioinformatic validation. - Expression analysis of monocot and dicot gene families. - In silico and bioinformatic approach to elucidate gene function. Characterization and functional analysis of genes specifically expressed in response to ionizing irradiation (cosmic-ray, gamma-ray, Ion beam). - High throughput trancriptomic analysis of plants under ionizing radiation using microarray. - Promotor and cis-element analysis of genes specifically expressed in response to ionizing radiation. - Validation and function analysis of candidate genes. - Elucidation of plant mechanism of sensing and response to ionization energy. Development of bioindicator plants detecting ionization energy. - Cloning and identification of 'Radio marker genes (RMG)'. - Development of Over-expression (O/E) or Knock-out (K/O) plant using RMG. Development of Genechip as an ionization energy detector. - Expression profiling analysis of genes specifically expression in response to ionization energy. - Prepare high-conserved gene specific oligomer. - Development of ionization energy monitoring Genechip and application

High-throughput identification of ionizing radiation-sensitive plant genes and development of radiation indicator plant and radiation sensing Genechip

Energy Technology Data Exchange (ETDEWEB)

Kim, Dong Sub; Kim, Jinbaek; Ha, Bokeun; Kim, Sang Hoon; Kim, Sunhee

2013-05-15

Physiological analysis of monocot model plant (rice) in response to ionizing radiation (cosmic-ray, gamma-ray, Ion beam). - Identification of antioxidant characters through cytochemical analysis. - Comparison of antioxidant activities in response to ionizing irradiation. - Evaluation of anthocyanin quantity in response to ionizing irradiation. Ionization energy response gene family analysis via bioinformatic validation. - Expression analysis of monocot and dicot gene families. - In silico and bioinformatic approach to elucidate gene function. Characterization and functional analysis of genes specifically expressed in response to ionizing irradiation (cosmic-ray, gamma-ray, Ion beam). - High throughput trancriptomic analysis of plants under ionizing radiation using microarray. - Promotor and cis-element analysis of genes specifically expressed in response to ionizing radiation. - Validation and function analysis of candidate genes. - Elucidation of plant mechanism of sensing and response to ionization energy. Development of bioindicator plants detecting ionization energy. - Cloning and identification of 'Radio marker genes (RMG)'. - Development of Over-expression (O/E) or Knock-out (K/O) plant using RMG. Development of Genechip as an ionization energy detector. - Expression profiling analysis of genes specifically expression in response to ionization energy. - Prepare high-conserved gene specific oligomer. - Development of ionization energy monitoring Genechip and application.

Robust multi-tissue gene panel for cancer detection

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Talantov Dmitri

2010-06-01

Full Text Available Abstract Background We have identified a set of genes whose relative mRNA expression levels in various solid tumors can be used to robustly distinguish cancer from matching normal tissue. Our current feature set consists of 113 gene probes for 104 unique genes, originally identified as differentially expressed in solid primary tumors in microarray data on Affymetrix HG-U133A platform in five tissue types: breast, colon, lung, prostate and ovary. For each dataset, we first identified a set of genes significantly differentially expressed in tumor vs. normal tissue at p-value = 0.05 using an experimentally derived error model. Our common cancer gene panel is the intersection of these sets of significantly dysregulated genes and can distinguish tumors from normal tissue on all these five tissue types. Methods Frozen tumor specimens were obtained from two commercial vendors Clinomics (Pittsfield, MA and Asterand (Detroit, MI. Biotinylated targets were prepared using published methods (Affymetrix, CA and hybridized to Affymetrix U133A GeneChips (Affymetrix, CA. Expression values for each gene were calculated using Affymetrix GeneChip analysis software MAS 5.0. We then used a software package called Genes@Work for differential expression discovery, and SVM light linear kernel for building classification models. Results We validate the predictability of this gene list on several publicly available data sets generated on the same platform. Of note, when analysing the lung cancer data set of Spira et al, using an SVM linear kernel classifier, our gene panel had 94.7% leave-one-out accuracy compared to 87.8% using the gene panel in the original paper. In addition, we performed high-throughput validation on the Dana Farber Cancer Institute GCOD database and several GEO datasets. Conclusions Our result showed the potential for this panel as a robust classification tool for multiple tumor types on the Affymetrix platform, as well as other whole genome arrays

Utility of the pooling approach as applied to whole genome association scans with high-density Affymetrix microarrays

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Gray Joanna

2010-11-01

Full Text Available Abstract Background We report an attempt to extend the previously successful approach of combining SNP (single nucleotide polymorphism microarrays and DNA pooling (SNP-MaP employing high-density microarrays. Whereas earlier studies employed a range of Affymetrix SNP microarrays comprising from 10 K to 500 K SNPs, this most recent investigation used the 6.0 chip which displays 906,600 SNP probes and 946,000 probes for the interrogation of CNVs (copy number variations. The genotyping assay using the Affymetrix SNP 6.0 array is highly demanding on sample quality due to the small feature size, low redundancy, and lack of mismatch probes. Findings In the first study published so far using this microarray on pooled DNA, we found that pooled cheek swab DNA could not accurately predict real allele frequencies of the samples that comprised the pools. In contrast, the allele frequency estimates using blood DNA pools were reasonable, although inferior compared to those obtained with previously employed Affymetrix microarrays. However, it might be possible to improve performance by developing improved analysis methods. Conclusions Despite the decreasing costs of genome-wide individual genotyping, the pooling approach may have applications in very large-scale case-control association studies. In such cases, our study suggests that high-quality DNA preparations and lower density platforms should be preferred.

Single-Feature Polymorphism Discovery in the Transcriptome of Tetraploid Alfalfa

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S. Samuel Yang

2009-11-01

Full Text Available Advances in alfalfa [ (L. subsp. ] breeding, molecular genetics, and genomics have been slow because this crop is an allogamous autotetraploid (2n = 4x = 32 with complex polysomic inheritance and few genomic resources. Increasing cellulose and decreasing lignin in alfalfa stem cell walls would improve this crop as a cellulosic ethanol feedstock. We conducted genome-wide analysis of single-feature polymorphisms (SFPs of two alfalfa genotypes (252, 1283 that differ in stem cell wall lignin and cellulose concentrations. SFP analysis was conducted using the GeneChip (Affymetrix, Santa Clara, CA as a cross-species platform. Analysis of GeneChip expression data files of alfalfa stem internodes of genotypes 252 and 1283 at two growth stages (elongating, post-elongation revealed 10,890 SFPs in 8230 probe sets. Validation analysis by polymerase chain reaction (PCR-sequencing of a random sample of SFPs indicated a 17% false discovery rate. Functional classification and over-representation analysis showed that genes involved in photosynthesis, stress response and cell wall biosynthesis were highly enriched among SFP-harboring genes. The GeneChip is a suitable cross-species platform for detecting SFPs in tetraploid alfalfa.

Novel roles for metallothionein-I + II (MT-I + II) in defense responses, neurogenesis, and tissue restoration after traumatic brain injury: insights from global gene expression profiling in wild-type and MT-I + II knockout mice

DEFF Research Database (Denmark)

Penkowa, Milena; Cáceres, Mario; Borup, Rehannah

2006-01-01

of the somatosensorial cortex and killed at 0, 1, 4, 8, and 16 days postlesion (dpl) using Affymetrix genechips/oligonucleotide arrays interrogating approximately 10,000 different murine genes (MG_U74Av2). Hierarchical clustering analysis of these genes readily shows an orderly pattern of gene responses at specific...... and opened new avenues that were confirmed by immunohistochemistry. Data in KO, MT-I-overexpressing, and MT-II-injected mice strongly suggest a role of these proteins in postlesional activation of neural stem cells....

A genomic and transcriptomic approach for a differential diagnosis between primary and secondary ovarian carcinomas in patients with a previous history of breast cancer

International Nuclear Information System (INIS)

Meyniel, Jean-Philippe; Alran, Séverine; Rapinat, Audrey; Gentien, David; Roman-Roman, Sergio; Mignot, Laurent; Sastre-Garau, Xavier; Cottu, Paul H; Decraene, Charles; Stern, Marc-Henri; Couturier, Jérôme; Lebigot, Ingrid; Nicolas, André; Weber, Nina; Fourchotte, Virginie

2010-01-01

The distinction between primary and secondary ovarian tumors may be challenging for pathologists. The purpose of the present work was to develop genomic and transcriptomic tools to further refine the pathological diagnosis of ovarian tumors after a previous history of breast cancer. Sixteen paired breast-ovary tumors from patients with a former diagnosis of breast cancer were collected. The genomic profiles of paired tumors were analyzed using the Affymetrix GeneChip ® Mapping 50 K Xba Array or Genome-Wide Human SNP Array 6.0 (for one pair), and the data were normalized with ITALICS (ITerative and Alternative normaLIzation and Copy number calling for affymetrix Snp arrays) algorithm or Partek Genomic Suite, respectively. The transcriptome of paired samples was analyzed using Affymetrix GeneChip ® Human Genome U133 Plus 2.0 Arrays, and the data were normalized with gc-Robust Multi-array Average (gcRMA) algorithm. A hierarchical clustering of these samples was performed, combined with a dataset of well-identified primary and secondary ovarian tumors. In 12 of the 16 paired tumors analyzed, the comparison of genomic profiles confirmed the pathological diagnosis of primary ovarian tumor (n = 5) or metastasis of breast cancer (n = 7). Among four cases with uncertain pathological diagnosis, genomic profiles were clearly distinct between the ovarian and breast tumors in two pairs, thus indicating primary ovarian carcinomas, and showed common patterns in the two others, indicating metastases from breast cancer. In all pairs, the result of the transcriptomic analysis was concordant with that of the genomic analysis. In patients with ovarian carcinoma and a previous history of breast cancer, SNP array analysis can be used to distinguish primary and secondary ovarian tumors. Transcriptomic analysis may be used when primary breast tissue specimen is not available

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips

NARCIS (Netherlands)

van Ruissen, Fred; Ruijter, Jan M.; Schaaf, Gerben J.; Asgharnegad, Lida; Zwijnenburg, Danny A.; Kool, Marcel; Baas, Frank

2005-01-01

Background: Serial Analysis of Gene Expression ( SAGE) and microarrays have found awidespread application, but much ambiguity exists regarding the evaluation of these technologies. Cross-platform utilization of gene expression data from the SAGE and microarray technology could reduce the need for

Analysis of Large Genomic Data in Silico: The EPICNorfolk Study of Obesity

DEFF Research Database (Denmark)

Zhao, Jing Hua; Luan, Jian'an; Tan, Qihua

In human genetics, large-scale data are now available with advances in genotyping technologies and international collaborative projects. Our ongoing study of obesity involves Affymetrix 500k genechips on approximately 7000 individuals from the European Prospective Investigation of Cancer (EPIC......) Norfolk study. Although the scale of our data is well beyond the ability of many software systems, we have successfully performed the analysis using the statistical analysis system (SAS) software. Our implementation trades memory with computing time and requires moderate hardware configuration. By using...

Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment.

Science.gov (United States)

Severgnini, Marco; Bicciato, Silvio; Mangano, Eleonora; Scarlatti, Francesca; Mezzelani, Alessandra; Mattioli, Michela; Ghidoni, Riccardo; Peano, Clelia; Bonnal, Raoul; Viti, Federica; Milanesi, Luciano; De Bellis, Gianluca; Battaglia, Cristina

2006-06-01

Meta-analysis of microarray data is increasingly important, considering both the availability of multiple platforms using disparate technologies and the accumulation in public repositories of data sets from different laboratories. We addressed the issue of comparing gene expression profiles from two microarray platforms by devising a standardized investigative strategy. We tested this procedure by studying MDA-MB-231 cells, which undergo apoptosis on treatment with resveratrol. Gene expression profiles were obtained using high-density, short-oligonucleotide, single-color microarray platforms: GeneChip (Affymetrix) and CodeLink (Amersham). Interplatform analyses were carried out on 8414 common transcripts represented on both platforms, as identified by LocusLink ID, representing 70.8% and 88.6% of annotated GeneChip and CodeLink features, respectively. We identified 105 differentially expressed genes (DEGs) on CodeLink and 42 DEGs on GeneChip. Among them, only 9 DEGs were commonly identified by both platforms. Multiple analyses (BLAST alignment of probes with target sequences, gene ontology, literature mining, and quantitative real-time PCR) permitted us to investigate the factors contributing to the generation of platform-dependent results in single-color microarray experiments. An effective approach to cross-platform comparison involves microarrays of similar technologies, samples prepared by identical methods, and a standardized battery of bioinformatic and statistical analyses.

Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway

DEFF Research Database (Denmark)

Jørgensen, Thomas R; Goosen, Theo; Hondel, Cees A M J J van den

2009-01-01

BACKGROUND: The filamentous fungus, Aspergillus niger, responds to nutrient availability by modulating secretion of various substrate degrading hydrolases. This ability has made it an important organism in industrial production of secreted glycoproteins. The recent publication of the A. niger...... the physiology and transcriptome of A. niger growing at the same specific growth rate (0.16 h(-1)) on xylose or maltose in carbon-limited chemostat cultures. Transcription profiles were obtained using Affymetrix GeneChip analysis of six replicate cultures for each of the two growth-limiting carbon sources...

Molecular profiling of ADAM12 in human bladder cancer

DEFF Research Database (Denmark)

Albrechtsen, Reidar; Dyrskjøt, Lars; Rudkjaer, Lise

2006-01-01

PURPOSE: We have previously found ADAM12, a disintegrin and metalloprotease, to be an interesting biomarker for breast cancer. The purpose of this study was to determine the gene and protein expression profiles of ADAM12 in different grades and stages of bladder cancer. EXPERIMENTAL DESIGN: ADAM12...... gene expression was evaluated in tumors from 96 patients with bladder cancer using a customized Affymetrix GeneChip. Gene expression in bladder cancer was validated using reverse transcription-PCR, quantitative PCR, and in situ hybridization. Protein expression was evaluated by immunohistochemical...

Genome-Wide Association Study of Calcium Accumulation in Grains of European Wheat Cultivars

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Dalia Z. Alomari

2017-10-01

Full Text Available Mineral concentrations in cereals are important for human health, especially for people who depend mainly on consuming cereal diet. In this study, we carried out a genome-wide association study (GWAS of calcium concentrations in wheat (Triticum aestivum L. grains using a European wheat diversity panel of 353 varieties [339 winter wheat (WW plus 14 of spring wheat (SW] and phenotypic data based on two field seasons. High genotyping densities of single-nucleotide polymorphism (SNP markers were obtained from the application of the 90k iSELECT ILLUMINA chip and a 35k Affymetrix chip. Inductively coupled plasma optical emission spectrometry (ICP-OES was used to measure the calcium concentrations of the wheat grains. Best linear unbiased estimates (BLUEs for calcium were calculated across the seasons and ranged from 288.20 to 647.50 among the varieties (μg g-1 DW with a mean equaling 438.102 (μg g-1 DW, and the heritability was 0.73. A total of 485 SNP marker–trait associations (MTAs were detected in data obtained from grains cultivated in both of the two seasons and BLUE values by considering associations with a -log10 (P-value ≥3.0. Among these SNP markers, we detected 276 markers with a positive allele effect and 209 markers with a negative allele effect. These MTAs were found on all chromosomes except chromosomes 3D, 4B, and 4D. The most significant association was located on chromosome 5A (114.5 cM and was linked to a gene encoding cation/sugar symporter activity as a potential candidate gene. Additionally, a number of candidate genes for the uptake or transport of calcium were located near significantly associated SNPs. This analysis highlights a number of genomic regions and candidate genes for further analysis as well as the challenges faced when mapping environmentally variable traits in genetically highly diverse variety panels. The research demonstrates the feasibility of the GWAS approach for illuminating the genetic architecture of

Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum lines

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Qi Bao

2012-01-01

Full Text Available Abstract Background Alteration in gene expression resulting from allopolyploidization is a prominent feature in plants, but its spectrum and extent are not fully known. Common wheat (Triticum aestivum was formed via allohexaploidization about 10,000 years ago, and became the most important crop plant. To gain further insights into the genome-wide transcriptional dynamics associated with the onset of common wheat formation, we conducted microarray-based genome-wide gene expression analysis on two newly synthesized allohexaploid wheat lines with chromosomal stability and a genome constitution analogous to that of the present-day common wheat. Results Multi-color GISH (genomic in situ hybridization was used to identify individual plants from two nascent allohexaploid wheat lines between Triticum turgidum (2n = 4x = 28; genome BBAA and Aegilops tauschii (2n = 2x = 14; genome DD, which had a stable chromosomal constitution analogous to that of common wheat (2n = 6x = 42; genome BBAADD. Genome-wide analysis of gene expression was performed for these allohexaploid lines along with their parental plants from T. turgidum and Ae. tauschii, using the Affymetrix Gene Chip Wheat Genome-Array. Comparison with the parental plants coupled with inclusion of empirical mid-parent values (MPVs revealed that whereas the great majority of genes showed the expected parental additivity, two major patterns of alteration in gene expression in the allohexaploid lines were identified: parental dominance expression and non-additive expression. Genes involved in each of the two altered expression patterns could be classified into three distinct groups, stochastic, heritable and persistent, based on their transgenerational heritability and inter-line conservation. Strikingly, whereas both altered patterns of gene expression showed a propensity of inheritance, identity of the involved genes was highly stochastic, consistent with the involvement of diverse Gene Ontology (GO

Reproducibility of gene expression across generations of Affymetrix microarrays

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Haslett Judith N

2003-06-01

Full Text Available Abstract Background The development of large-scale gene expression profiling technologies is rapidly changing the norms of biological investigation. But the rapid pace of change itself presents challenges. Commercial microarrays are regularly modified to incorporate new genes and improved target sequences. Although the ability to compare datasets across generations is crucial for any long-term research project, to date no means to allow such comparisons have been developed. In this study the reproducibility of gene expression levels across two generations of Affymetrix GeneChips® (HuGeneFL and HG-U95A was measured. Results Correlation coefficients were computed for gene expression values across chip generations based on different measures of similarity. Comparing the absolute calls assigned to the individual probe sets across the generations found them to be largely unchanged. Conclusion We show that experimental replicates are highly reproducible, but that reproducibility across generations depends on the degree of similarity of the probe sets and the expression level of the corresponding transcript.

Washing scaling of GeneChip microarray expression

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Krohn Knut

2010-05-01

Full Text Available Abstract Background Post-hybridization washing is an essential part of microarray experiments. Both the quality of the experimental washing protocol and adequate consideration of washing in intensity calibration ultimately affect the quality of the expression estimates extracted from the microarray intensities. Results We conducted experiments on GeneChip microarrays with altered protocols for washing, scanning and staining to study the probe-level intensity changes as a function of the number of washing cycles. For calibration and analysis of the intensity data we make use of the 'hook' method which allows intensity contributions due to non-specific and specific hybridization of perfect match (PM and mismatch (MM probes to be disentangled in a sequence specific manner. On average, washing according to the standard protocol removes about 90% of the non-specific background and about 30-50% and less than 10% of the specific targets from the MM and PM, respectively. Analysis of the washing kinetics shows that the signal-to-noise ratio doubles roughly every ten stringent washing cycles. Washing can be characterized by time-dependent rate constants which reflect the heterogeneous character of target binding to microarray probes. We propose an empirical washing function which estimates the survival of probe bound targets. It depends on the intensity contribution due to specific and non-specific hybridization per probe which can be estimated for each probe using existing methods. The washing function allows probe intensities to be calibrated for the effect of washing. On a relative scale, proper calibration for washing markedly increases expression measures, especially in the limit of small and large values. Conclusions Washing is among the factors which potentially distort expression measures. The proposed first-order correction method allows direct implementation in existing calibration algorithms for microarray data. We provide an experimental

In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip® technology

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Ye Shui Q

2005-05-01

Full Text Available Abstract Background Genomic approaches in large animal models (canine, ovine etc are challenging due to insufficient genomic information for these species and the lack of availability of corresponding microarray platforms. To address this problem, we speculated that conserved interspecies genetic sequences can be experimentally detected by cross-species hybridization. The Affymetrix platform probe redundancy offers flexibility in selecting individual probes with high sequence similarities between related species for gene expression analysis. Results Gene expression profiles of 40 canine samples were generated using the human HG-U133A GeneChip (U133A. Due to interspecies genetic differences, only 14 ± 2% of canine transcripts were detected by U133A probe sets whereas profiling of 40 human samples detected 49 ± 6% of human transcripts. However, when these probe sets were deconstructed into individual probes and examined performance of each probe, we found that 47% of human probes were able to find their targets in canine tissues and generate a detectable hybridization signal. Therefore, we restricted gene expression analysis to these probes and observed the 60% increase in the number of identified canine transcripts. These results were validated by comparison of transcripts identified by our restricted analysis of cross-species hybridization with transcripts identified by hybridization of total lung canine mRNA to new Affymetrix Canine GeneChip®. Conclusion The experimental identification and restriction of gene expression analysis to probes with detectable hybridization signal drastically increases transcript detection of canine-human hybridization suggesting the possibility of broad utilization of cross-hybridizations of related species using GeneChip technology.

Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses

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Khalil Zaynali

2010-06-01

Full Text Available Abstract Background Sucrose phosphate synthase (SPS is an important component of the plant sucrose biosynthesis pathway. In the monocotyledonous Poaceae, five SPS genes have been identified. Here we present a detailed analysis of the wheat SPSII family in wheat. A set of homoeologue-specific primers was developed in order to permit both the detection of sequence variation, and the dissection of the individual contribution of each homoeologue to the global expression of SPSII. Results The expression in bread wheat over the course of development of various sucrose biosynthesis genes monitored on an Affymetrix array showed that the SPS genes were regulated over time and space. SPSII homoeologue-specific assays were used to show that the three homoeologues contributed differentially to the global expression of SPSII. Genetic mapping placed the set of homoeoloci on the short arms of the homoeologous group 3 chromosomes. A resequencing of the A and B genome copies allowed the detection of four haplotypes at each locus. The 3B copy includes an unspliced intron. A comparison of the sequences of the wheat SPSII orthologues present in the diploid progenitors einkorn, goatgrass and Triticum speltoides, as well as in the more distantly related species barley, rice, sorghum and purple false brome demonstrated that intronic sequence was less well conserved than exonic. Comparative sequence and phylogenetic analysis of SPSII gene showed that false purple brome was more similar to Triticeae than to rice. Wheat - rice synteny was found to be perturbed at the SPS region. Conclusion The homoeologue-specific assays will be suitable to derive associations between SPS functionality and key phenotypic traits. The amplicon sequences derived from the homoeologue-specific primers are informative regarding the evolution of SPSII in a polyploid context.

Microarray analysis identified Puccinia striiformis f. sp. tritici genes involved in infection and sporulation.

Science.gov (United States)

Puccinia striiformis f. sp. tritici (Pst) causes stripe rust, one of the most important diseases of wheat worldwide. To identify Pst genes involved in infection and sporulation, a custom oligonucleotide Genechip was made using sequences of 442 genes selected from Pst cDNA libraries. Microarray analy...

A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study

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Pearce Elizabeth N

2007-09-01

Full Text Available Abstract Background Glomerular filtration rate (GFR and urinary albumin excretion (UAE are markers of kidney function that are known to be heritable. Many endocrine conditions have strong familial components. We tested for association between the Affymetrix GeneChip Human Mapping 100K single nucleotide polymorphism (SNP set and measures of kidney function and endocrine traits. Methods Genotype information on the Affymetrix GeneChip Human Mapping 100K SNP set was available on 1345 participants. Serum creatinine and cystatin-C (cysC; n = 981 were measured at the seventh examination cycle (1998–2001; GFR (n = 1010 was estimated via the Modification of Diet in Renal Disease (MDRD equation; UAE was measured on spot urine samples during the sixth examination cycle (1995–1998 and was indexed to urinary creatinine (n = 822. Thyroid stimulating hormone (TSH was measured at the third and fourth examination cycles (1981–1984; 1984–1987 and mean value of the measurements were used (n = 810. Age-sex-adjusted and multivariable-adjusted residuals for these measurements were used in association with genotype data using generalized estimating equations (GEE and family-based association tests (FBAT models. We presented the results for association tests using additive allele model. We evaluated associations with 70,987 SNPs on autosomes with minor allele frequencies of at least 0.10, Hardy-Weinberg Equilibrium p-value ≥ 0.001, and call rates of at least 80%. Results The top SNPs associated with these traits using the GEE method were rs2839235 with GFR (p-value 1.6*10-05, rs1158167 with cysC (p-value 8.5*10-09, rs1712790 with UAE (p-value 1.9*10-06, and rs6977660 with TSH (p-value 3.7*10-06, respectively. The top SNPs associated with these traits using the FBAT method were rs6434804 with GFR(p-value 2.4*10-5, rs563754 with cysC (p-value 4.7*10-5, rs1243400 with UAE (p-value 4.8*10-6, and rs4128956 with TSH (p-value 3.6*10-5, respectively. Detailed

Estimating the similarity of alternative Affymetrix probe sets using transcriptional networks

Science.gov (United States)

2013-01-01

Background The usefulness of the data from Affymetrix microarray analysis depends largely on the reliability of the files describing the correspondence between probe sets, genes and transcripts. Particularly, when a gene is targeted by several probe sets, these files should give information about the similarity of each alternative probe set pair. Transcriptional networks integrate the multiple correlations that exist between all probe sets and supply much more information than a simple correlation coefficient calculated for two series of signals. In this study, we used the PSAWN (Probe Set Assignment With Networks) programme we developed to investigate whether similarity of alternative probe sets resulted in some specific properties. Findings PSAWNpy delivered a full textual description of each probe set and information on the number and properties of secondary targets. PSAWNml calculated the similarity of each alternative probe set pair and allowed finding relationships between similarity and localisation of probes in common transcripts or exons. Similar alternative probe sets had very low negative correlation, high positive correlation and similar neighbourhood overlap. Using these properties, we devised a test that allowed grouping similar probe sets in a given network. By considering several networks, additional information concerning the similarity reproducibility was obtained, which allowed defining the actual similarity of alternative probe set pairs. In particular, we calculated the common localisation of probes in exons and in known transcripts and we showed that similarity was correctly correlated with them. The information collected on all pairs of alternative probe sets in the most popular 3’ IVT Affymetrix chips is available in tabular form at http://bns.crbm.cnrs.fr/download.html. Conclusions These processed data can be used to obtain a finer interpretation when comparing microarray data between biological conditions. They are particularly well

Estimating the similarity of alternative Affymetrix probe sets using transcriptional networks.

Science.gov (United States)

Bellis, Michel

2013-03-21

The usefulness of the data from Affymetrix microarray analysis depends largely on the reliability of the files describing the correspondence between probe sets, genes and transcripts. Particularly, when a gene is targeted by several probe sets, these files should give information about the similarity of each alternative probe set pair. Transcriptional networks integrate the multiple correlations that exist between all probe sets and supply much more information than a simple correlation coefficient calculated for two series of signals. In this study, we used the PSAWN (Probe Set Assignment With Networks) programme we developed to investigate whether similarity of alternative probe sets resulted in some specific properties. PSAWNpy delivered a full textual description of each probe set and information on the number and properties of secondary targets. PSAWNml calculated the similarity of each alternative probe set pair and allowed finding relationships between similarity and localisation of probes in common transcripts or exons. Similar alternative probe sets had very low negative correlation, high positive correlation and similar neighbourhood overlap. Using these properties, we devised a test that allowed grouping similar probe sets in a given network. By considering several networks, additional information concerning the similarity reproducibility was obtained, which allowed defining the actual similarity of alternative probe set pairs. In particular, we calculated the common localisation of probes in exons and in known transcripts and we showed that similarity was correctly correlated with them. The information collected on all pairs of alternative probe sets in the most popular 3' IVT Affymetrix chips is available in tabular form at http://bns.crbm.cnrs.fr/download.html. These processed data can be used to obtain a finer interpretation when comparing microarray data between biological conditions. They are particularly well adapted for searching 3' alternative

A new method for class prediction based on signed-rank algorithms applied to Affymetrix® microarray experiments

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Vassal Aurélien

2008-01-01

Full Text Available Abstract Background The huge amount of data generated by DNA chips is a powerful basis to classify various pathologies. However, constant evolution of microarray technology makes it difficult to mix data from different chip types for class prediction of limited sample populations. Affymetrix® technology provides both a quantitative fluorescence signal and a decision (detection call: absent or present based on signed-rank algorithms applied to several hybridization repeats of each gene, with a per-chip normalization. We developed a new prediction method for class belonging based on the detection call only from recent Affymetrix chip type. Biological data were obtained by hybridization on U133A, U133B and U133Plus 2.0 microarrays of purified normal B cells and cells from three independent groups of multiple myeloma (MM patients. Results After a call-based data reduction step to filter out non class-discriminative probe sets, the gene list obtained was reduced to a predictor with correction for multiple testing by iterative deletion of probe sets that sequentially improve inter-class comparisons and their significance. The error rate of the method was determined using leave-one-out and 5-fold cross-validation. It was successfully applied to (i determine a sex predictor with the normal donor group classifying gender with no error in all patient groups except for male MM samples with a Y chromosome deletion, (ii predict the immunoglobulin light and heavy chains expressed by the malignant myeloma clones of the validation group and (iii predict sex, light and heavy chain nature for every new patient. Finally, this method was shown powerful when compared to the popular classification method Prediction Analysis of Microarray (PAM. Conclusion This normalization-free method is routinely used for quality control and correction of collection errors in patient reports to clinicians. It can be easily extended to multiple class prediction suitable with

Canola-Wheat Rotation versus Continuous Wheat for the Southern Plains

OpenAIRE

Duke, Jason C.; Epplin, Francis M.; Vitale, Jeffrey D.; Peeper, Thomas F.

2009-01-01

Crop rotations are not common in the wheat belt of the Southern Plains. After years of continuous wheat, weeds have become increasingly difficult and expensive to manage. Yield data were elicited from farmers and used to determine if canola-wheat-wheat rotations are economically competitive with continuous wheat in the region.

Wheat in the Mediterranean revisited--tetraploid wheat landraces assessed with elite bread wheat Single Nucleotide Polymorphism markers.

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Oliveira, Hugo R; Hagenblad, Jenny; Leino, Matti W; Leigh, Fiona J; Lister, Diane L; Penã-Chocarro, Leonor; Jones, Martin K

2014-05-08

Single Nucleotide Polymorphism (SNP) panels recently developed for the assessment of genetic diversity in wheat are primarily based on elite varieties, mostly those of bread wheat. The usefulness of such SNP panels for studying wheat evolution and domestication has not yet been fully explored and ascertainment bias issues can potentially affect their applicability when studying landraces and tetraploid ancestors of bread wheat. We here evaluate whether population structure and evolutionary history can be assessed in tetraploid landrace wheats using SNP markers previously developed for the analysis of elite cultivars of hexaploid wheat. We genotyped more than 100 tetraploid wheat landraces and wild emmer wheat accessions, some of which had previously been screened with SSR markers, for an existing SNP panel and obtained publically available genotypes for the same SNPs for hexaploid wheat varieties and landraces. Results showed that quantification of genetic diversity can be affected by ascertainment bias but that the effects of ascertainment bias can at least partly be alleviated by merging SNPs to haplotypes. Analyses of population structure and genetic differentiation show strong subdivision between the tetraploid wheat subspecies, except for durum and rivet that are not separable. A more detailed population structure of durum landraces could be obtained than with SSR markers. The results also suggest an emmer, rather than durum, ancestry of bread wheat and with gene flow from wild emmer. SNP markers developed for elite cultivars show great potential for inferring population structure and can address evolutionary questions in landrace wheat. Issues of marker genome specificity and mapping need, however, to be addressed. Ascertainment bias does not seem to interfere with the ability of a SNP marker system developed for elite bread wheat accessions to detect population structure in other types of wheat.

EzArray: A web-based highly automated Affymetrix expression array data management and analysis system

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Zhu Yuelin

2008-01-01

Full Text Available Abstract Background Though microarray experiments are very popular in life science research, managing and analyzing microarray data are still challenging tasks for many biologists. Most microarray programs require users to have sophisticated knowledge of mathematics, statistics and computer skills for usage. With accumulating microarray data deposited in public databases, easy-to-use programs to re-analyze previously published microarray data are in high demand. Results EzArray is a web-based Affymetrix expression array data management and analysis system for researchers who need to organize microarray data efficiently and get data analyzed instantly. EzArray organizes microarray data into projects that can be analyzed online with predefined or custom procedures. EzArray performs data preprocessing and detection of differentially expressed genes with statistical methods. All analysis procedures are optimized and highly automated so that even novice users with limited pre-knowledge of microarray data analysis can complete initial analysis quickly. Since all input files, analysis parameters, and executed scripts can be downloaded, EzArray provides maximum reproducibility for each analysis. In addition, EzArray integrates with Gene Expression Omnibus (GEO and allows instantaneous re-analysis of published array data. Conclusion EzArray is a novel Affymetrix expression array data analysis and sharing system. EzArray provides easy-to-use tools for re-analyzing published microarray data and will help both novice and experienced users perform initial analysis of their microarray data from the location of data storage. We believe EzArray will be a useful system for facilities with microarray services and laboratories with multiple members involved in microarray data analysis. EzArray is freely available from http://www.ezarray.com/.

The Medicago truncatula gene expression atlas web server

Directory of Open Access Journals (Sweden)

Tang Yuhong

2009-12-01

Full Text Available Abstract Background Legumes (Leguminosae or Fabaceae play a major role in agriculture. Transcriptomics studies in the model legume species, Medicago truncatula, are instrumental in helping to formulate hypotheses about the role of legume genes. With the rapid growth of publically available Affymetrix GeneChip Medicago Genome Array GeneChip data from a great range of tissues, cell types, growth conditions, and stress treatments, the legume research community desires an effective bioinformatics system to aid efforts to interpret the Medicago genome through functional genomics. We developed the Medicago truncatula Gene Expression Atlas (MtGEA web server for this purpose. Description The Medicago truncatula Gene Expression Atlas (MtGEA web server is a centralized platform for analyzing the Medicago transcriptome. Currently, the web server hosts gene expression data from 156 Affymetrix GeneChip® Medicago genome arrays in 64 different experiments, covering a broad range of developmental and environmental conditions. The server enables flexible, multifaceted analyses of transcript data and provides a range of additional information about genes, including different types of annotation and links to the genome sequence, which help users formulate hypotheses about gene function. Transcript data can be accessed using Affymetrix probe identification number, DNA sequence, gene name, functional description in natural language, GO and KEGG annotation terms, and InterPro domain number. Transcripts can also be discovered through co-expression or differential expression analysis. Flexible tools to select a subset of experiments and to visualize and compare expression profiles of multiple genes have been implemented. Data can be downloaded, in part or full, in a tabular form compatible with common analytical and visualization software. The web server will be updated on a regular basis to incorporate new gene expression data and genome annotation, and is accessible

Dissecting an alternative splicing analysis workflow for GeneChip® Exon 1.0 ST Affymetrix arrays

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Calogero Raffaele A

2008-11-01

Full Text Available Abstract Background A new microarray platform (GeneChip® Exon 1.0 ST has recently been developed by Affymetrix http://www.affymetrix.com. This microarray platform changes the conventional view of transcript analysis since it allows the evaluation of the expression level of a transcript by querying each exon component. The Exon 1.0 ST platform does however raise some issues regarding the approaches to be used in identifying genome-wide alternative splicing events (ASEs. In this study an exon-level data analysis workflow is dissected in order to detect limit and strength of each step, thus modifying the overall workflow and thereby optimizing the detection of ASEs. Results This study was carried out using a semi-synthetic exon-skipping benchmark experiment embedding a total of 268 exon skipping events. Our results point out that summarization methods (RMA, PLIER do not affect the efficacy of statistical tools in detecting ASEs. However, data pre-filtering is mandatory if the detected number of false ASEs are to be reduced. MiDAS and Rank Product methods efficiently detect true ASEs but they suffer from the lack of multiple test error correction. The intersection of MiDAS and Rank Product results efficiently moderates the detection of false ASEs. Conclusion To optimize the detection of ASEs we propose the following workflow: i data pre-filtering, ii statistical selection of ASEs using both MiDAS and Rank Product, iii intersection of results derived from the two statistical analyses in order to moderate family-wise errors (FWER.

A genetic linkage map with 178 SSR and 1 901 SNP markers constructed using a RIL population in wheat （Triticum aestivum L.）

Institute of Scientific and Technical Information of China (English)

ZHAI Hui-jie; FENG Zhi-yu; LIU Xin-ye; CHENG Xue-jiao; PENG Hui-ru; YAO Ying-yin; SUN Qi-xin; NI Zhong-fu

2015-01-01

The construction of high density genetic linkage map provides a powerful tool to detect and map quantitative trait loci （QTLs） controlling agronomically important traits. In this study, simple sequence repeat （SSR） markers and Illumina 9K iSelect single nucleotide polymorphism （SNP） genechip were employed to construct one genetic linkage map of common wheat （Triticum aestivum L.） using 191 recombinant inbred lines （RILs） derived from cross Yu 8679xJing 411. This map included 1 901 SNP loci and 178 SSR loci, covering 1 659.9 cM and 1 000 marker bins, with an average interval distance of 1.66 cM. A, B and D genomes covered 719.1,703.5 and 237.3 cM, with an average interval distance of 1.66, 1.45 and 2.9 cM, respectively. Notably, the genetic linkage map covered 20 chromosomes, with the exception of chromosome 5D. Bioinformatics analysis revealed that 1 754 （92.27%） of 1 901 mapped SNP loci could be aligned to 1 215 distinct wheat unigenes, among which 1 184 （97.4%） were located on one single chromosome, and the rest 31 （2.6%） were located on 2 to 3 chromosomes. By performing in silico comparison, 214 chromosome deletion bin-mapped expressed sequence tags （ESTs）, 1 043 Brachypodium genes and 1 033 rice genes were further added onto the genetic linkage map. This map not only integrated genetic and physical maps, SSR and SNP loci, respectively, but also provided the information of Brachypodium and rice genes corresponding to 1 754 SNP loci. Therefore, it will be a useful tool for comparative genomics analysis, fine mapping of QTL/gene controlling agronomically important traits and marker-assisted selection breeding in wheat.

Gene-chip studies of adipogenesis-regulated microRNAs in mouse primary adipocytes and human obesity

Directory of Open Access Journals (Sweden)

Gallagher Iain J

2011-03-01

Full Text Available Abstract Background Adipose tissue abundance relies partly on the factors that regulate adipogenesis, i.e. proliferation and differentiation of adipocytes. While components of the transcriptional program that initiates adipogenesis is well-known, the importance of microRNAs in adipogenesis is less well studied. We thus set out to investigate whether miRNAs would be actively modulated during adipogenesis and obesity. Methods Several models exist to study adipogenesis in vitro, of which the cell line 3T3-L1 is the most well known, albeit not the most physiologically appropriate. Thus, as an alternative, we produced EXIQON microarray of brown and white primary murine adipocytes (prior to and following differentiation to yield global profiles of miRNAs. Results We found 65 miRNAs regulated during in vitro adipogenesis in primary adipocytes. We evaluated the similarity of our responses to those found in non-primary cell models, through literature data-mining. When comparing primary adipocyte profiles, with those of cell lines reported in the literature, we found a high degree of difference in 'adipogenesis' regulated miRNAs suggesting that the model systems may not be accurately representing adipogenesis. The expression of 10 adipogenesis-regulated miRNAs were studied using real-time qPCR and then we selected 5 miRNAs, that showed robust expression, were profiled in subcutaneous adipose tissue obtained from 20 humans with a range of body mass indices (BMI, range = 21-48, and all samples have U133+2 Affymetrix profiles provided. Of the miRNAs tested, mir-21 was robustly expressed in human adipose tissue and positively correlated with BMI (R2 = 0.49, p Conclusion In conclusion, we provide a preliminary analysis of miRNAs associated with primary cell in vitro adipogenesis and demonstrate that the inflammation-associated miRNA, mir-21 is up-regulated in subcutaneous adipose tissue in human obesity. Further, we provide a novel transcriptomics database of

Wheat: The Whole Story.

Science.gov (United States)

Oklahoma State Dept. of Education, Oklahoma City.

This publication presents information on wheat. Wheat was originally a wild grass and not native to the United States. Wheat was not planted there until 1777 (and then only as a hobby crop). Wheat is grown on more acres than any other grain in this country. Soft wheats are grown east of the Mississippi River, and hard wheats are grown west of the…

Uncovering the molecular secrets of inflammatory breast cancer biology: an integrated analysis of three distinct affymetrix gene expression datasets.

Science.gov (United States)

Van Laere, Steven J; Ueno, Naoto T; Finetti, Pascal; Vermeulen, Peter; Lucci, Anthony; Robertson, Fredika M; Marsan, Melike; Iwamoto, Takayuki; Krishnamurthy, Savitri; Masuda, Hiroko; van Dam, Peter; Woodward, Wendy A; Viens, Patrice; Cristofanilli, Massimo; Birnbaum, Daniel; Dirix, Luc; Reuben, James M; Bertucci, François

2013-09-01

Inflammatory breast cancer (IBC) is a poorly characterized form of breast cancer. So far, the results of expression profiling in IBC are inconclusive due to various reasons including limited sample size. Here, we present the integration of three Affymetrix expression datasets collected through the World IBC Consortium allowing us to interrogate the molecular profile of IBC using the largest series of IBC samples ever reported. Affymetrix profiles (HGU133-series) from 137 patients with IBC and 252 patients with non-IBC (nIBC) were analyzed using unsupervised and supervised techniques. Samples were classified according to the molecular subtypes using the PAM50-algorithm. Regression models were used to delineate IBC-specific and molecular subtype-independent changes in gene expression, pathway, and transcription factor activation. Four robust IBC-sample clusters were identified, associated with the different molecular subtypes (Pmolecular subtype-independent 79-gene signature, which held independent prognostic value in a series of 871 nIBCs. Functional analysis revealed attenuated TGF-β signaling in IBC. We show that IBC is transcriptionally heterogeneous and that all molecular subtypes described in nIBC are detectable in IBC, albeit with a different frequency. The molecular profile of IBC, bearing molecular traits of aggressive breast tumor biology, shows attenuation of TGF-β signaling, potentially explaining the metastatic potential of IBC tumor cells in an unexpected manner. ©2013 AACR.

Improved wheat for baking.

Science.gov (United States)

Faridi, H; Finley, J W

1989-01-01

To bakers, wheat quality means the performance characteristics of the flour milled from the wheat when used in specific wheat products. The tremendous increase in the number of wheat cultivars grown in the U.S. in recent years, along with the unusual climate, new advances in milling technology, and increased automation of baking lines, have resulted in bakery production problems partly attributed to wheat flour quality. In this review various factors affecting wheat quality are explained. Concerns of bread and cookie/cracker manufacturers on deterioration of the wheat quality are discussed, and, finally, some solutions are proposed.

Determination of Zinc in Wheat and Wheat Bran by Neutron Activation Analysis

International Nuclear Information System (INIS)

Ghazi Zahedi, M.; Bahrami Samani, A.; Sedaghati Zadeh, M.; Ghannadi Maragheh, M.

2012-01-01

The knowledge of concentration of elements in foodstuffs is of significant interest. Wheat is one of the most consumed food stuffs in Iran and zinc is also considered as one of the necessary and vital elements. Since the measurement of some trace elements is not practical by the conventional analytical methods, due to the lower detection limit, the neutron activation analysis was applied to determine the zinc in wheat and wheat bran. Food sample of roughly 50 mg was irradiated for 24 hours. After cooling, the interval samples were counted by a gamma spectrometry system. The concentration of zinc in wheat without bran and the wheat bran were 18.444±0.656 and 19.927±0.698 ppm, respectively. The amount of zinc in wheat bran was noticeable so it showed that consuming wheat with bran is more beneficial than the wheat with no bran for the human-beings body requirements.

Incorporating Yearly Derived Winter Wheat Maps Into Winter Wheat Yield Forecasting Model

Science.gov (United States)

Skakun, S.; Franch, B.; Roger, J.-C.; Vermote, E.; Becker-Reshef, I.; Justice, C.; Santamaría-Artigas, A.

2016-01-01

Wheat is one of the most important cereal crops in the world. Timely and accurate forecast of wheat yield and production at global scale is vital in implementing food security policy. Becker-Reshef et al. (2010) developed a generalized empirical model for forecasting winter wheat production using remote sensing data and official statistics. This model was implemented using static wheat maps. In this paper, we analyze the impact of incorporating yearly wheat masks into the forecasting model. We propose a new approach of producing in season winter wheat maps exploiting satellite data and official statistics on crop area only. Validation on independent data showed that the proposed approach reached 6% to 23% of omission error and 10% to 16% of commission error when mapping winter wheat 2-3 months before harvest. In general, we found a limited impact of using yearly winter wheat masks over a static mask for the study regions.

Resistance to Wheat Curl Mite in Arthropod-Resistant Rye-Wheat Translocation Lines

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Lina Maria Aguirre-Rojas

2017-11-01

Full Text Available The wheat curl mite, Aceria toschiella (Keifer, and a complex of viruses vectored by A. toschiella substantially reduce wheat yields in every wheat-producing continent in the world. The development of A. toschiella-resistant wheat cultivars is a proven economically and ecologically viable method of controlling this pest. This study assessed A. toschiella resistance in wheat genotypes containing the H13, H21, H25, H26, H18 and Hdic genes for resistance to the Hessian fly, Mayetiola destructor (Say and in 94M370 wheat, which contains the Dn7 gene for resistance to the Russian wheat aphid, Diuraphis noxia (Kurdjumov. A. toschiella populations produced on plants containing Dn7 and H21 were significantly lower than those on plants of the susceptible control and no different than those on the resistant control. Dn7 resistance to D. noxia and H21 resistance to M. destructor resulted from translocations of chromatin from rye into wheat (H21—2BS/2RL, Dn7—1BL/1RS. These results provide new wheat pest management information, indicating that Dn7 and H21 constitute resources that can be used to reduce yield losses caused by A. toschiella, M. destructor, D. noxia, and wheat streak mosaic virus infection by transferring multi-pest resistance to single sources of germplasm.

Wheat Quality Council, Hard Spring Wheat Technical Committee, 2017 Crop

Science.gov (United States)

Nine experimental lines of hard spring wheat were grown at up to six locations in 2017 and evaluated for kernel, milling, and bread baking quality against the check variety Glenn. Wheat samples were submitted through the Wheat Quality Council and processed and milled at the USDA-ARS Hard Red Spring...

Prehaustorial and posthaustorial resistance to wheat leaf rust in diploid wheat

NARCIS (Netherlands)

Anker, C.C.

2001-01-01

In modern wheat cultivars, resistance to wheat leaf rust, Puccinia triticina , is either based on hypersensitivity resistance or on partial resistance. Hypersensitivity resistance in wheat is monogenic, often complete and posthaustorial: it is induced after the

Starch facilitates enzymatic wheat gluten hydrolysis

NARCIS (Netherlands)

Hardt, N.A.; Boom, R.M.; Goot, van der A.J.

2015-01-01

Wheat gluten can be hydrolyzed by either using (vital) wheat gluten or directly from wheat flour. This study investigates the influence of the presence of starch, the main component of wheat, on enzymatic wheat gluten hydrolysis. Wheat gluten present in wheat flour (WFG) and vital wheat gluten (VWG)

Correlation between genetic and geographic structure in Europe

DEFF Research Database (Denmark)

Lao, Oscar; Lu, Timothy T; Nothnagel, Michael

2008-01-01

geographic but narrow genomic coverage [1, 2], or vice versa [3-6]. We therefore investigated Affymetrix GeneChip 500K genotype data from 2,514 individuals belonging to 23 different subpopulations, widely spread over Europe. Although we found only a low level of genetic differentiation between subpopulations......, the existing differences were characterized by a strong continent-wide correlation between geographic and genetic distance. Furthermore, mean heterozygosity was larger, and mean linkage disequilibrium smaller, in southern as compared to northern Europe. Both parameters clearly showed a clinal distribution...... Europe. By including the widely used CEPH from Utah (CEU) samples into our analysis, we could show that these individuals represent northern and western Europeans reasonably well, thereby confirming their assumed regional ancestry....

Transcriptional analysis of left-sided colitis, pancolitis, and ulcerative colitis-associated dysplasia

DEFF Research Database (Denmark)

Bjerrum, Jacob T; Nielsen, Ole H; Riis, Lene B

2014-01-01

to identify potential biomarkers and transcripts of importance for the carcinogenic behavior of chronic inflammation. METHODS: The Affymetrix GeneChip Human Genome U133 Plus 2.0 was applied on colonic biopsies from UC patients with left-sided UC, pancolitis, dysplasia, and controls. Reverse transcription...... polymerase chain reaction and immunohistochemistry were performed for validating selected transcripts in the initial cohort and in 2 independent cohorts of patients with UC. Microarray data were analyzed by principal component analysis, and reverse transcription polymerase chain reaction...... and immunohistochemistry data by the Wilcoxon's rank-sum test. RESULTS: The principal component analysis results revealed separate clusters for left-sided UC, pancolitis, dysplasia, and controls. Close clustering of dysplastic and pancolitic samples indicated similarities in gene expression. Indeed, 101 and 656 parallel...

Effects legumes, Fallow and wheat on subsequent wheat production in Central Anatolia

International Nuclear Information System (INIS)

Halitligil, M. B.; Akin, A.; Aydin, M.

1996-01-01

In order to determine the Nsub 2- fixation capacities of lentil, vetch, chickpea and fodderpea in a legume-wheat rotation by using the A-value method of N 15 technique, and to assess the amount of carry-over of N to wheat from the previous legume as well as water contribution of fallow, wheat and legumes to the following wheat under rainfed Central Anatolia conditions field experiments were conducted in 1992 and 1993 at three different provinces using completely randomized block design with 5 replications. Results we obtained showed that %Ndff values among legumesdid not differ significantly neither within or between locations. Legumesvaried significantly (P<0.05) in their %Ndfa values at each location and highest values of %Ndfa were obtained at Eskisehir. In general, %Ndfa varied from59-84, and 36-85 for chickpea,lentils and vetchs. The evaluation of the yield and N data obtained in 1993 indicated that lentil (winter or summer) -wheat rotation at Ankara and Eskisehir conditions and chickpea-wheat rotation at Konya conditions should be prefered, due to the higher seed and total yields, higher N yields and higher %NUE values obtained from these rotations in comparison to the others. In order to estimate the carry-over of nitrogen from legumes to the succeeding wheat crop, % nitrogen derived from unknown (%Ndfu) were also calculated. Highest amount of carry-over from the legumesto the succeeding wheat were 31.1 kgN/ha from summer lentil at Ankara; 16.9 kgN/ha from summer lentil at Eskisehir; and 8.0 kgN/ha from chickpea at Konya. These results obtined showed that a lentil-wheat rotation at Ankara and Eskisehir and a chickpea-wheat rotation at Konya. Mean while, the evaluation of the soil and WUE data at both Eskisehir and Ankara indicated that winter lentil-wheat rotation should be prefered in these areas due to more efficient use of water by wheat crop after this rotation system

Wheat Allergy

Science.gov (United States)

... of reactions. Learn more here. Milk Egg Peanut Tree Nuts Soy Wheat Fish Shellfish Sesame Other Food ... federal law. Download our resource on how to identify wheat on food labels. Avoid foods that contain ...

Eighteen cases of wheat allergy and wheat-dependent exercise-induced urticaria/anaphylaxis sensitized by hydrolyzed wheat protein in soap.

Science.gov (United States)

Kobayashi, Tomoko; Ito, Tomonobu; Kawakami, Hiroshi; Fuzishiro, Kanzan; Hirano, Hirofumi; Okubo, Yukari; Tsuboi, Ryoji

2015-08-01

Glupearl 19S, an acid-hydrolyzed wheat protein (HWP), is used widely in Japan as a moisturizing ingredient in facial soaps. Since 2010, there has been an increasing number of reports of contact urticaria and wheat allergy resulting from the use of products containing this substance. Sixty-one patients who had used HWP-containing facial soap visited our hospital. Thirty-five of these experienced urticaria or anaphylaxis after consuming wheat-containing food. Eighteen of the 35 patients tested positive to 0.01% Glupearl 19S solution. Wheat-specific IgE and serum gluten-specific IgE were higher in the patients with HWP allergy than in non-HWP allergy patients. Among the patients who tested positive to Glupearl 19S on the skin prick test, nine experienced HWP-wheat-dependent exercise-induced anaphylaxis, and four experienced food-dependent anaphylaxis. Moreover, four of these patients not only experienced food-dependent anaphylaxis but also a worsening of the symptoms during exercise. The clinical symptomology was so variable that the patients were classified into six groups. We found that patients with HWP allergy tended to manifest symptoms of both HWP-wheat-dependent exercise-induced anaphylaxis and contact urticaria. The etiology of hydrolyzed wheat protein allergy is unknown. Patients with a history of these symptoms need to be informed about the risk of consuming wheat-containing foods and the importance of excluding such items from their diet. © 2015 The International Society of Dermatology.

Deoxynivalenol in wheat and wheat products from a harvest affected by fusarium head blight

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Lidiane Viera MACHADO

Full Text Available Abstract Fusarium head blight is an important disease occurring in wheat, caused mainly by the fungus Fusarium graminearum. In addition to direct damage to crops, reduced quality and yield losses, the infected grains can accumulate mycotoxins (toxic metabolites originating from prior fungal growth, especially deoxynivalenol (DON. Wheat crops harvested in 2014/2015 in southern Brazil were affected by high levels of Fusarium head blight. In this context, the aim of this study was evaluate the mycotoxicological quality of Brazilian wheat grains and wheat products (wheat flour and wheat bran for DON. DON contamination was evaluated in 1,504 wheat and wheat product samples produced in Brazil during 2014. It was determined by high performance liquid chromatograph fitted to a mass spectrometer (LC-MS / MS. The results showed that 1,000 (66.5% out of the total samples tested were positive for DON. The mean level of sample contamination was 1047 µg.kg-1, but only 242 samples (16.1% had contamination levels above the maximum permissible levels (MPL - the maximum content allowed by current Brazilian regulation. As of 2017, MPL will be stricter. Thus, research should be conducted on DON contamination of wheat and wheat products, since wheat is a raw material widely used in the food industry, and DON can cause serious harm to public health.

21 CFR 137.195 - Crushed wheat.

Science.gov (United States)

2010-04-01

... 21 Food and Drugs 2 2010-04-01 2010-04-01 false Crushed wheat. 137.195 Section 137.195 Food and... Related Products § 137.195 Crushed wheat. Crushed wheat, coarse ground wheat, is the food prepared by so crushing cleaned wheat other than durum wheat and red durum wheat that, when tested by the method...

THE IMPACT OF REFORMING WHEAT IMPORTING STATE-TRADING ENTERPRISES ON THE QUALITY OF WHEAT IMPORTED

OpenAIRE

Lavoie, Nathalie

2003-01-01

Recent surveys of wheat importers indicate that countries that import wheat via a state trader are less sensitive to quality issues in import decision making than countries that import wheat through private traders. This study examines conceptually and empirically the impact of the deregulation of wheat imports on the quality and source of wheat imports.

Wheat for Kids! [and] Teacher's Guide.

Science.gov (United States)

Idaho Wheat Commission, Boise.

"Wheat for Kids" contains information at the elementary school level about: the structure of the wheat kernel; varieties of wheat and their uses; growing wheat; making wheat dough; the U.S. Department of Agriculture Food Guide Pyramid and nutrition; Idaho's part of the international wheat market; recipes; and word games based on the…

21 CFR 137.190 - Cracked wheat.

Science.gov (United States)

2010-04-01

... 21 Food and Drugs 2 2010-04-01 2010-04-01 false Cracked wheat. 137.190 Section 137.190 Food and... Related Products § 137.190 Cracked wheat. Cracked wheat is the food prepared by so cracking or cutting into angular fragments cleaned wheat other than durum wheat and red durum wheat that, when tested by...

Variation in Susceptibility to Wheat dwarf virus among Wild and Domesticated Wheat

Science.gov (United States)

Nygren, Jim; Shad, Nadeem; Kvarnheden, Anders; Westerbergh, Anna

2015-01-01

We investigated the variation in plant response in host-pathogen interactions between wild (Aegilops spp., Triticum spp.) and domesticated wheat (Triticum spp.) and Wheat dwarf virus (WDV). The distribution of WDV and its wild host species overlaps in Western Asia in the Fertile Crescent, suggesting a coevolutionary relationship. Bread wheat originates from a natural hybridization between wild emmer wheat (carrying the A and B genomes) and the wild D genome donor Aegilops tauschii, followed by polyploidization and domestication. We studied whether the strong selection during these evolutionary processes, leading to genetic bottlenecks, may have resulted in a loss of resistance in domesticated wheat. In addition, we investigated whether putative fluctuations in intensity of selection imposed on the host-pathogen interactions have resulted in a variation in susceptibility to WDV. To test our hypotheses we evaluated eighteen wild and domesticated wheat taxa, directly or indirectly involved in wheat evolution, for traits associated with WDV disease such as leaf chlorosis, different growth traits and WDV content. The plants were exposed to viruliferous leafhoppers (Psammotettix alienus) in a greenhouse trial and evaluated at two time points. We found three different plant response patterns: i) continuous reduction in growth over time, ii) weak response at an early stage of plant development but a much stronger response at a later stage, and iii) remission of symptoms over time. Variation in susceptibility may be explained by differences in the intensity of natural selection, shaping the coevolutionary interaction between WDV and the wild relatives. However, genetic bottlenecks during wheat evolution have not had a strong impact on WDV resistance. Further, this study indicates that the variation in susceptibility may be associated with the genome type and that the ancestor Ae. tauschii may be useful as genetic resource for the improvement of WDV resistance in wheat. PMID

Variation in susceptibility to Wheat dwarf virus among wild and domesticated wheat.

Directory of Open Access Journals (Sweden)

Jim Nygren

Full Text Available We investigated the variation in plant response in host-pathogen interactions between wild (Aegilops spp., Triticum spp. and domesticated wheat (Triticum spp. and Wheat dwarf virus (WDV. The distribution of WDV and its wild host species overlaps in Western Asia in the Fertile Crescent, suggesting a coevolutionary relationship. Bread wheat originates from a natural hybridization between wild emmer wheat (carrying the A and B genomes and the wild D genome donor Aegilops tauschii, followed by polyploidization and domestication. We studied whether the strong selection during these evolutionary processes, leading to genetic bottlenecks, may have resulted in a loss of resistance in domesticated wheat. In addition, we investigated whether putative fluctuations in intensity of selection imposed on the host-pathogen interactions have resulted in a variation in susceptibility to WDV. To test our hypotheses we evaluated eighteen wild and domesticated wheat taxa, directly or indirectly involved in wheat evolution, for traits associated with WDV disease such as leaf chlorosis, different growth traits and WDV content. The plants were exposed to viruliferous leafhoppers (Psammotettix alienus in a greenhouse trial and evaluated at two time points. We found three different plant response patterns: i continuous reduction in growth over time, ii weak response at an early stage of plant development but a much stronger response at a later stage, and iii remission of symptoms over time. Variation in susceptibility may be explained by differences in the intensity of natural selection, shaping the coevolutionary interaction between WDV and the wild relatives. However, genetic bottlenecks during wheat evolution have not had a strong impact on WDV resistance. Further, this study indicates that the variation in susceptibility may be associated with the genome type and that the ancestor Ae. tauschii may be useful as genetic resource for the improvement of WDV resistance in

Wheat-Dependent Exercise-Induced Anaphylaxis Sensitized with Hydrolyzed Wheat Protein in Soap

Directory of Open Access Journals (Sweden)

Yuko Chinuki

2012-01-01

Full Text Available Wheat-dependent exercise-induced anaphylaxis (WDEIA is a specific form of wheat allergy typically induced by exercise after ingestion of wheat products. Wheat ω-5 gliadin is a major allergen associated with conventional WDEIA, and detection of serum immunoglobulin E (IgE specific to recombinant ω-5 gliadin is a reliable method for its diagnosis. Recently, an increased incidence of a new subtype of WDEIA, which is likely to be sensitized via a percutaneous and/or rhinoconjunctival route to hydrolyzed wheat protein (HWP, has been observed. All of the patients with this new subtype had used the same brand of soap, which contained HWP. Approximately half of these patients developed contact allergy several months later and subsequently developed WDEIA. In each of these patients, contact allergy with soap exposure preceded food ingestion-induced reactions. Other patients directly developed generalized symptoms upon ingestion of wheat products. The predominant observed symptom of the new WDEIA subtype was angioedema of the eyelids; a number of patients developed anaphylaxis. This new subtype of WDEIA has little serum ω-5 gliadin-specific serum IgE.

Effects of imidacloprid and clothianidin seed treatments on wheat aphids and their natural enemies on winter wheat.

Science.gov (United States)

Zhang, Peng; Zhang, Xuefeng; Zhao, Yunhe; Wei, Yan; Mu, Wei; Liu, Feng

2016-06-01

Wheat aphid (Hemiptera: Aphididae) is one of the major pests of winter wheat and has posed a significant threat to winter wheat production in China. Although neonicotinoid insecticidal seed treatments have been suggested to be a control method, the season-long efficacy on pests and the impact on their natural enemies are still uncertain. Experiments were conducted to determine the efficacy of imidacloprid and clothianidin on the control of aphids, the number of their natural enemies and the emergence rate and yield of wheat during 2011-2014. Imidacloprid and clothianidin seed treatments had no effect on the emergence rate of winter wheat and could prevent yield losses and wheat aphid infestations throughout the winter wheat growing season. Furthermore, their active ingredients were detected in winter wheat leaves up to 200 days after sowing. Imidacloprid and clothianidin seed treatments had no adverse effects on ladybirds, hoverflies or parasitoids, and instead increased the spider-aphid ratios. Wheat seeds treated with imidacloprid and clothianidin were effective against wheat aphids throughout the winter wheat growing season and reduced the yield loss under field conditions. Imidacloprid and clothianidin seed treatments may be an important component of the integrated management of wheat aphids on winter wheat. © 2015 Society of Chemical Industry. © 2015 Society of Chemical Industry.

Submergence sensitivity of durum wheat, bread wheat and barley at the germination stage

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Iduna Arduini

2016-06-01

Full Text Available Soil waterlogging at initial growth stages can cause heavy yield losses of winter cereals. Therefore, the screening for submergence tolerance traits in seeds of commercial varieties is of high concern worldwide. Ten Italian varieties of durum wheat (Triticum durum Desf., bread wheat (T. aestivum L. and barley (Hordeum vulgare L. were investigated for their ability to germinate in submerged conditions and to recover after submergence periods of three to 15 days. Submergence prevented germination and decreased germinability, at rates that increased with duration of submergence. Sensitivity ranked in the order: barley >durum wheat >bread wheat. We related the higher sensitivity of barley to its slower germination and slightly higher leakage of electrolytes, whereas the percentage of abnormal seedlings was lower than in other species. It was less than 4%, compared to less than 15 and 8% in durum wheat and bread wheat, respectively. Wide varietal differences were found in all species. According to variety, after 6-day submergence, germinability ranged from 2 to 42% in barley, from 5 to 80% in durum wheat, and from 30 to 77% in bread wheat. Varieties with more than 40% seed survival were three, six and seven per species, in the same order. The differential submergence sensitivity of varieties indicates a potential to select for waterlogging tolerance within Italian genotypes of winter cereal crops.

An endogenous reference gene of common and durum wheat for detection of genetically modified wheat.

Science.gov (United States)

Imai, Shinjiro; Tanaka, Keiko; Nishitsuji, Yasuyuki; Kikuchi, Yosuke; Matsuoka, Yasuyuki; Arami, Shin-Ichiro; Sato, Megumi; Haraguchi, Hiroyuki; Kurimoto, Youichi; Mano, Junichi; Furui, Satoshi; Kitta, Kazumi

2012-01-01

To develop a method for detecting GM wheat that may be marketed in the near future, we evaluated the proline-rich protein (PRP) gene as an endogenous reference gene of common wheat (Triticum aestivum L.) and durum wheat (Triticum durum L.). Real-time PCR analysis showed that only DNA of wheat was amplified and no amplification product was observed for phylogenetically related cereals, indicating that the PRP detection system is specific to wheat. The intensities of the amplification products and Ct values among all wheat samples used in this study were very similar, with no nonspecific or additional amplification, indicating that the PRP detection system has high sequence stability. The limit of detection was estimated at 5 haploid genome copies. The PRP region was demonstrated to be present as a single or double copy in the common wheat haploid genome. Furthermore, the PRP detection system showed a highly linear relationship between Ct values and the amount of plasmid DNA, indicating that an appropriate calibration curve could be constructed for quantitative detection of GM wheat. All these results indicate that the PRP gene is a suitable endogenous reference gene for PCR-based detection of GM wheat.

[Wheat anaphylaxis or wheat-dependent exercise-induced anaphylaxis caused by use of a soap product which contains hydrolyzed wheat proteins. -a report of 12 cases-].

Science.gov (United States)

Sugiyama, Akiko; Kishikawa, Reiko; Nishie, Haruko; Takeuchi, Satoshi; Shimoda, Terufumi; Iwanaga, Tomoaki; Nishima, Sankei; Furue, Masutaka

2011-11-01

Recently, it has become a social problem that hydrolyzed wheat protein in facial soap can induce wheat allergy including wheat-dependent exercise-induced anaphylaxis (WDEIA). We described the clinical characteristics of the patients related. We collected 12 cases who had had a medical examination from January to October in 2010. All the patients were female and mean age was 36.0± 9.9 years. All of them had had no prior symptoms history of wheat allergy, they gradually developed wheat anaphylaxis or WDEIA in an average of 2 years after they started to use a soap product in question which contains hydrolyzed wheat proteins. Most patients suffered immediate contact allergic reactions after or at the time of washing their face with the soap product. 10 of 12 patients showed a low level of IgE to CAP-recombinant ω-5-gliadin. Episodes of anaphylaxis were prevented by avoiding both intake of wheat-containing foods and usage of the soap product. We concluded that their wheat anaphylaxis is likely to be caused by epicutaneous sensitization of the hydrolyzed wheat proteins in the soap product. It was important that physicians should know the possibility of sensitization from non-dietary antigen.

Isolation of Microarray-Grade Total RNA, MicroRNA, and DNA from a Single PAXgene Blood RNA Tube

DEFF Research Database (Denmark)

Kruhøffer, Mogens; Andersen, Lars Dyrskjøt; Voss, Thorsten

2007-01-01

We have developed a procedure for isolation of microRNA and genomic DNA in addition to total RNA from whole blood stabilized in PAXgene Blood RNA tubes. The procedure is based on automatic extraction on a BioRobot MDx and includes isolation of DNA from a fraction of the stabilized blood...... and recovery of small RNA species that are otherwise lost. The procedure presented here is suitable for large-scale experiments and is amenable to further automation. Procured total RNA and DNA was tested using Affymetrix Expression and single-nucleotide polymorphism GeneChips, respectively, and isolated micro......RNA was tested using spotted locked nucleic acid-based microarrays. We conclude that the yield and quality of total RNA, microRNA, and DNA from a single PAXgene blood RNA tube is sufficient for downstream microarray analysis....

Molecular profiling of ADAM12 in human bladder cancer

DEFF Research Database (Denmark)

Albrechtsen, Reidar; Dyrskjøt, Lars; Rudkjaer, Lise

2006-01-01

PURPOSE: We have previously found ADAM12, a disintegrin and metalloprotease, to be an interesting biomarker for breast cancer. The purpose of this study was to determine the gene and protein expression profiles of ADAM12 in different grades and stages of bladder cancer. EXPERIMENTAL DESIGN: ADAM12...... gene expression was evaluated in tumors from 96 patients with bladder cancer using a customized Affymetrix GeneChip. Gene expression in bladder cancer was validated using reverse transcription-PCR, quantitative PCR, and in situ hybridization. Protein expression was evaluated by immunohistochemical...... staining on tissue arrays of bladder cancers. The presence and relative amount of ADAM12 in the urine of cancer patients were determined by Western blotting and densitometric measurements, respectively. RESULTS: ADAM12 mRNA expression was significantly up-regulated in bladder cancer, as determined...

Microarray-based analysis of the lung recovery process after stainless-steel welding fume exposure in Sprague-Dawley rats.

Science.gov (United States)

Oh, Jung-Hwa; Yang, Mi-jin; Yang, Young-Su; Park, Han-Jin; Heo, Sun Hee; Lee, Eun-Hee; Song, Chang-Woo; Yoon, Seokjoo

2009-02-01

Repeated exposure to welding fumes promotes a reversible increase in pulmonary disease risk, but the molecular mechanisms by which welding fumes induce lung injury and how the lung recovers from such insults are unclear. In the present study, pulmonary function and gene-expression profiles in the lung were analyzed by Affymetrix GeneChip microarray after 30 days of consecutive exposure to manual metal arc welding combined with stainless-steel (MMA-SS) welding fumes, and again after 30 days of recovery from MMA-SS fume exposure. In total, 577 genes were identified as being either up-regulated or down-regulated (over twofold changes, p process of the lung were up-regulated exclusively in the recovery group. Collectively, these data may help elucidate the molecular mechanism of the recovery process of the lung after welding fume exposure.

21 CFR 184.1322 - Wheat gluten.

Science.gov (United States)

2010-04-01

... 21 Food and Drugs 3 2010-04-01 2009-04-01 true Wheat gluten. 184.1322 Section 184.1322 Food and... Substances Affirmed as GRAS § 184.1322 Wheat gluten. (a) Wheat gluten (CAS Reg. No. 8002-80-0) is the principal protein component of wheat and consists mainly of gliadin and glutenin. Wheat gluten is obtained...

Hybrid breeding in wheat: technologies to improve hybrid wheat seed production.

Science.gov (United States)

Whitford, Ryan; Fleury, Delphine; Reif, Jochen C; Garcia, Melissa; Okada, Takashi; Korzun, Viktor; Langridge, Peter

2013-12-01

Global food security demands the development and delivery of new technologies to increase and secure cereal production on finite arable land without increasing water and fertilizer use. There are several options for boosting wheat yields, but most offer only small yield increases. Wheat is an inbred plant, and hybrids hold the potential to deliver a major lift in yield and will open a wide range of new breeding opportunities. A series of technological advances are needed as a base for hybrid wheat programmes. These start with major changes in floral development and architecture to separate the sexes and force outcrossing. Male sterility provides the best method to block self-fertilization, and modifying the flower structure will enhance pollen access. The recent explosion in genomic resources and technologies provides new opportunities to overcome these limitations. This review outlines the problems with existing hybrid wheat breeding systems and explores molecular-based technologies that could improve the hybrid production system to reduce hybrid seed production costs, a prerequisite for a commercial hybrid wheat system.

A Family with Mental Retardation, Epilepsy and Cerebellar Hypoplasia Showing Linkage to Chromosome 20p11.21-q11.23

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Fatih Bayrakli

2014-01-01

Full Text Available Background: Cerebellar hypoplasia (CH is a rare malformation caused by various etiologies, usually manifesting clinically as nonprogressive cerebellar ataxia with or without mental retardation. The molecular pathogenesis of the autosomal recessive cerebellar ataxias has a wide range of mechanisms. Differential diagnosis and categorization of the recessive cerebellar ataxias, however, need more specific, biochemical and genetic investigation. Methods: This study applied whole-genome linkage analysis to study a family with nonprogressive cerebellar ataxia and additional mental retardation, epilepsy, and facial dysmorphic features. Genotyping and linkage analysis was done using the GeneChip Mapping 250K NspI Array (Affymetrix Inc., Santa Clara, Calif., USA for genome-wide linkage analysis of the genotyping data from the affected children and their parents. Results: Allegro software version 1.2 was used for multipoint linkage analysis. We assumed an autosomal recessive inheritance pattern and assigned a penetrance of 0.999. Single-nucleotide polymorphism allele frequencies were estimated from the Affymetrix data of the Caucasian family studied. Using these parameters, a theoretical maximum logarithm of the odds score of 2.69 was identified at chromosome 20p11.21-q11.23. Conclusions: This chromosomal locus is unprecedented in autosomal recessive and nonprogressive ataxia disorder. Further investigation might reveal a new causative gene generating the CH phenotype.

Pirimiphos-methyl residues in stored wheat and barley, bread, burghul and parboiled wheat

International Nuclear Information System (INIS)

Hadjidemetriou, D.G.

1990-01-01

Residues of 14 C-pirimiphos-methyl in stored grain declined to 88% in wheat and 82% in barley after 12 months. Corresponding percentages with the unlabelled insecticide were 78% and 59% since only the parent chemical was determined. Surface residues, removed by washing the grain with water, decreased from 3.3 to 0.2 mg/kg for wheat and from 2.0 to 0.2 mg/kg for barley. Bound residues increased gradually with time and reached a maximum of 2.2% for wheat and 3.0% for barley in 12 months. Pirimiphos-methyl residues in flour increased from 1.1 at 0 time to 2.2 mg/kg after one year. The mean values of residues contained in the unwashed wheat grain were 81% for bran and 19% for flour. The loss in milling during preparation of wholemeal flour from prewashed grain was 7% for wheat and 6% for barley. Processed products from wheat showed residue losses ranging from 24 to 45%. (author). 16 refs, 2 figs, 2 tabs

Binding of zinc and iron to wheat bread, wheat bran, and their components.

Science.gov (United States)

Ismail-Beigi, F; Faraji, B; Reinhold, J G

1977-10-01

Wholemeal wheat bread decreases the availability and intestinal absorption of divalent metals. To define this action further, binding of zinc in vitro to a wheat wholemeal bread (Tanok), dephytinized Tanok, and cellulose was determined at pH 5.0 to 7.5. Zinc binding by each was highly pH-dependent and reached a maximum at pH 6.5 to 7.5. Removal of phytate from Tanok did not reduce its binding capability. Wheat bran at pH 6.5 and 6.8 bound 72% of iron (0.5 microgram/ml of solution) and 82.5% of zinc (1.43 microgram/ml solution), respectively. Lignin and two of the hemicellulose fractions of wheat bran and high binding capabilities for zinc (85.6, 87.1, and 82.1%, respectively) whereas a third had a lower zinc-binding capability (38.7%). Binding of zinc to various celluloses and dextrans is also demonstrated. Formation of complexes of these metals with wheat fiber can explain, at least in part, the decreased availability of dietary iron and zinc in wholemeal wheat bread.

Eat Wheat!

Science.gov (United States)

Idaho Wheat Commission, Boise.

This pamphlet contains puzzles, games, and a recipe designed to teach elementary school pupils about wheat. It includes word games based on the U.S. Department of Agriculture Food Guide Pyramid and on foods made from wheat. The Food Guide Pyramid can be cut out of the pamphlet and assembled as a three-dimensional information source and food guide.…

21 CFR 137.200 - Whole wheat flour.

Science.gov (United States)

2010-04-01

... 21 Food and Drugs 2 2010-04-01 2010-04-01 false Whole wheat flour. 137.200 Section 137.200 Food... Flours and Related Products § 137.200 Whole wheat flour. (a) Whole wheat flour, graham flour, entire wheat flour is the food prepared by so grinding cleaned wheat, other than durum wheat and red durum...

Genomic response to Wnt signalling is highly context-dependent - Evidence from DNA microarray and chromatin immunoprecipitation screens of Wnt/TCF targets

International Nuclear Information System (INIS)

Railo, Antti; Pajunen, Antti; Itaeranta, Petri; Naillat, Florence; Vuoristo, Jussi; Kilpelaeinen, Pekka; Vainio, Seppo

2009-01-01

Wnt proteins are important regulators of embryonic development, and dysregulated Wnt signalling is involved in the oncogenesis of several human cancers. Our knowledge of the downstream target genes is limited, however. We used a chromatin immunoprecipitation-based assay to isolate and characterize the actual gene segments through which Wnt-activatable transcription factors, TCFs, regulate transcription and an Affymetrix microarray analysis to study the global transcriptional response to the Wnt3a ligand. The anti-β-catenin immunoprecipitation of DNA-protein complexes from mouse NIH3T3 fibroblasts expressing a fusion protein of β-catenin and TCF7 resulted in the identification of 92 genes as putative TCF targets. GeneChip assays of gene expression performed on NIH3T3 cells and the rat pheochromocytoma cell line PC12 revealed 355 genes in NIH3T3 and 129 genes in the PC12 cells with marked changes in expression after Wnt3a stimulus. Only 2 Wnt-regulated genes were shared by both cell lines. Surprisingly, Disabled-2 was the only gene identified by the chromatin immunoprecipitation approach that displayed a marked change in expression in the GeneChip assay. Taken together, our approaches give an insight into the complex context-dependent nature of Wnt pathway transcriptional responses and identify Disabled-2 as a potential new direct target for Wnt signalling.

Wheat ferritins: Improving the iron content of the wheat grain

DEFF Research Database (Denmark)

Borg, Søren; Brinch-Pedersen, Henrik; Tauris, Birgitte

2012-01-01

The characterization of the full complement of wheat ferritins show that the modern hexaploid wheat genome contains two ferritin genes, TaFer1 and TaFer2, each represented by three homeoalleles and placed on chromosome 5 and 4, respectively. The two genes are differentially regulated and expresse...

Patterns of suspected wheat-related allergy

DEFF Research Database (Denmark)

Junker Christensen, Morten; Eller, Esben; Mortz, Charlotte G

2014-01-01

BACKGROUND: Allergy to wheat can present clinically in different forms: Sensitization to ingested wheat via the gastrointestinal tract can cause traditional food allergy or in combination with exercise, Wheat-Dependent Exercise-Induced Anaphylaxis (WDEIA). Sensitization to inhaled wheat flour may......). All children had atopic dermatitis, and most (13/15) outgrew their wheat allergy. Most children (13/15) had other food allergies. Challenge positive patients showed significantly higher levels of sIgE to wheat and significantly more were SPT positive than challenge negative. Group 2: Eleven out of 13...... of sIgE to ω-5-gliadin. The natural course is presently unknown. CONCLUSION: Wheat allergy can manifest in different disease entities, rendering a detailed case history and challenge mandatory. Patient age, occupation, concomitant allergies (food or inhalant) and atopic dermatitis are important factors...

Response of wheat to tillage and nitrogen fertilization in rice-wheat system

International Nuclear Information System (INIS)

Qamar, R.; Ehsanullah, A.; Ahmad, R.; Iqbal, M.

2012-01-01

In a rice-wheat system, rice stubbles remaining in the field often delay early planting of winter wheat to utilize residual soil moisture and reduce operating costs. A randomized complete block design in a split plot arrangement was conducted with four seasonal tillage methods [conventional tillage, CT; deep tillage, DT; zero tillage with zone disk tiller, ZDT; and happy seeder, HS] as main plots and five N levels [0, 75, 100, 125, and 150 kg ha/sup -1/] as subplots during 2009 to 2010 and 2010 to 2011 wheat growing seasons. Results showed that DT significantly decreased soil bulk density, penetration resistance, and volumetric moisture content compared with CT, ZDT and HS. However, wheat growth and yield parameter such as fertile tillers, plant height, root length, spike length, grain yields, and water and nutrient-use efficiency was significantly higher in DT compared with other tillage treatments. Wheat growth and yield was more increased by N fertilization at 125 kg ha/sup -1/ than other N rates. However, when the wheat plant productivity index was plotted over N rates, the non-linear relationship showed that N fertilization at 80 kg N ha-1 accounted for 85% of the variability in the plant productivity under DT and HS while ZDT had the same productivity at 120 kg N ha/sup -1/. (author)

7 CFR 810.2201 - Definition of wheat.

Science.gov (United States)

2010-01-01

... 7 Agriculture 7 2010-01-01 2010-01-01 false Definition of wheat. 810.2201 Section 810.2201... GRAIN United States Standards for Wheat Terms Defined § 810.2201 Definition of wheat. Grain that, before the removal of dockage, consists of 50 percent or more common wheat (Triticum aestivum L.), club wheat...

Pilot Study: Comparison of Sourdough Wheat Bread and Yeast-Fermented Wheat Bread in Individuals with Wheat Sensitivity and Irritable Bowel Syndrome

OpenAIRE

Laatikainen, Reijo; Koskenpato, Jari; Hongisto, Sanna-Maria; Loponen, Jussi; Poussa, Tuija; Huang, Xin; Sontag-Strohm, Tuula; Salmenkari, Hanne; Korpela, Riitta

2017-01-01

Many patients suspect wheat as being a major trigger of their irritable bowel syndrome (IBS) symptoms. Our aim was to evaluate whether sourdough wheat bread baked without baking improvers and using a long dough fermentation time (>12 h), would result in lower quantities of alpha-amylase/trypsin inhibitors (ATIs) and Fermentable, Oligo-, Di-, Mono-saccharides and Polyols (FODMAPs), and would be better tolerated than yeast-fermented wheat bread for subjects with IBS who have a poor subjectiv...

Wheat biotechnology: A minireview

OpenAIRE

Patnaik, Debasis; Khurana, Paramjit

2001-01-01

Due to the inherent difficulties associated with gene delivery into regenerable explants and recovery of plantlets with the introduced transgene, wheat was the last among cereals to be genetically transformed. This review attempts to summarize different efforts in the direction of achieving genetic transformation of wheat by various methods. Particle bombardment is the most widely employed procedure for the introduction of marker genes and also for the generation of transformed wheat with int...

Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources

Directory of Open Access Journals (Sweden)

Waugh Robbie

2010-12-01

Full Text Available Abstract Background Because of its size, allohexaploid nature and high repeat content, the wheat genome has always been perceived as too complex for efficient molecular studies. We recently constructed the first physical map of a wheat chromosome (3B. However gene mapping is still laborious in wheat because of high redundancy between the three homoeologous genomes. In contrast, in the closely related diploid species, barley, numerous gene-based markers have been developed. This study aims at combining the unique genomic resources developed in wheat and barley to decipher the organisation of gene space on wheat chromosome 3B. Results Three dimensional pools of the minimal tiling path of wheat chromosome 3B physical map were hybridised to a barley Agilent 15K expression microarray. This led to the fine mapping of 738 barley orthologous genes on wheat chromosome 3B. In addition, comparative analyses revealed that 68% of the genes identified were syntenic between the wheat chromosome 3B and barley chromosome 3 H and 59% between wheat chromosome 3B and rice chromosome 1, together with some wheat-specific rearrangements. Finally, it indicated an increasing gradient of gene density from the centromere to the telomeres positively correlated with the number of genes clustered in islands on wheat chromosome 3B. Conclusion Our study shows that novel structural genomics resources now available in wheat and barley can be combined efficiently to overcome specific problems of genetic anchoring of physical contigs in wheat and to perform high-resolution comparative analyses with rice for deciphering the organisation of the wheat gene space.

POTENTIAL IMPACTS OF GM WHEAT ON UNITED STATES AND NORTHERN PLAINS WHEAT TRADE

OpenAIRE

Taylor, Richard D.; DeVuyst, Eric A.; Koo, Won W.

2003-01-01

The potential introduction of genetically modified (GM) wheat has both supporters and opponents waging battle in the popular press and scholarly research. Supporters highlight the benefits to producers, while the opponents highlight the unknown safety factors for consumers. The topic is very important to the United States, as a large portion of the wheat production is exported overseas. Consumer groups in some countries are resisting GM wheat. This study utilizes a spatial equilibrium model t...

Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples

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Tong Weida

2010-10-01

Full Text Available Abstract Background The Affymetrix GeneChip® system is a commonly used platform for microarray analysis but the technology is inherently expensive. Unfortunately, changes in experimental planning and execution, such as the unavailability of previously anticipated samples or a shift in research focus, may render significant numbers of pre-purchased GeneChip® microarrays unprocessed before their manufacturer’s expiration dates. Researchers and microarray core facilities wonder whether expired microarrays are still useful for gene expression analysis. In addition, it was not clear whether the two human reference RNA samples established by the MAQC project in 2005 still maintained their transcriptome integrity over a period of four years. Experiments were conducted to answer these questions. Results Microarray data were generated in 2009 in three replicates for each of the two MAQC samples with either expired Affymetrix U133A or unexpired U133Plus2 microarrays. These results were compared with data obtained in 2005 on the U133Plus2 microarray. The percentage of overlap between the lists of differentially expressed genes (DEGs from U133Plus2 microarray data generated in 2009 and in 2005 was 97.44%. While there was some degree of fold change compression in the expired U133A microarrays, the percentage of overlap between the lists of DEGs from the expired and unexpired microarrays was as high as 96.99%. Moreover, the microarray data generated using the expired U133A microarrays in 2009 were highly concordant with microarray and TaqMan® data generated by the MAQC project in 2005. Conclusions Our results demonstrated that microarray data generated using U133A microarrays, which were more than four years past the manufacturer’s expiration date, were highly specific and consistent with those from unexpired microarrays in identifying DEGs despite some appreciable fold change compression and decrease in sensitivity. Our data also suggested that the

Oxylipins discriminate between whole grain wheat and wheat aleurone intake: a metabolomics study on pig plasma

DEFF Research Database (Denmark)

Nørskov, Natalja; Hedemann, Mette Skou; Theil, Peter Kappel

2013-01-01

were also found in the flour and the bread consumed by pigs. Since the germ is part of the whole grain flour, the germ is most likely responsible for the elevated level of oxylipins in plasma after whole grain wheat consumption. This finding may also point towards bioactive compounds, which can be used......A pig model was used to investigate the difference in metabolic response of plasma between whole grain wheat and wheat aleurone. Six pigs were fed in a cross-over design iso dietary fiber (DF) breads prepared from whole grain wheat and wheat aleurone and with a wash-out diet based on bread produced...

DNA microsatellite region for a reliable quantification of soft wheat adulteration in durum wheat-based foodstuffs by real-time PCR.

Science.gov (United States)

Sonnante, Gabriella; Montemurro, Cinzia; Morgese, Anita; Sabetta, Wilma; Blanco, Antonio; Pasqualone, Antonella

2009-11-11

Italian industrial pasta and durum wheat typical breads must be prepared using exclusively durum wheat semolina. Previously, a microsatellite sequence specific of the wheat D-genome had been chosen for traceability of soft wheat in semolina and bread samples, using qualitative and quantitative Sybr green-based real-time experiments. In this work, we describe an improved method based on the same soft wheat genomic region by means of a quantitative real-time PCR using a dual-labeled probe. Standard curves based on dilutions of 100% soft wheat flour, pasta, or bread were constructed. Durum wheat semolina, pasta, and bread samples were prepared with increasing amounts of soft wheat to verify the accuracy of the method. Results show that reliable quantifications were obtained especially for the samples containing a lower amount of soft wheat DNA, fulfilling the need to verify labeling of pasta and typical durum wheat breads.

DEVELOPMENT OF A FUNCTIONAL PURPOSE WHIPPED BREAD WHOLE GRAIN WHEAT, RYE AND WHEAT BRAN

Directory of Open Access Journals (Sweden)

G. O. Magomedov

2015-01-01

Full Text Available The article discusses the development of whipped bakery products enriched with dietary fiber, minerals, vitamins retinol, tocopherol, group, polyunsaturated fatty acids through the use of rye and wheat bran and flour of wholegrain wheat. The main raw material for enrichment whipped bakery products used wheat bran and rye. Choice of rye and wheat bran as supplementation prepared whipped bread is explained not only from the point of view of the rationality of the use of this secondary raw materials, but also its rich vitamin and mineral composition. Wheat bran contain the necessary man of b vitamins, including B1, B2, B6, PP and others. Found provitamin a (carotene and vitamin E (tocopherol. Bran is rich in mineral substances. Among them potassium, magnesium, chromium, zinc, copper, selenium and other trace elements. Thanks to this composition bran are essential dietary product. They are rich in insoluble fiber and can be useful to reduce the risk of developing colon cancer. Rye bran contain dietary fiber, tocopherol E, thiamin B1, Riboflavin B2, Pantothenic acid B5, B4 (choline, nicotinic acid B3, etc. In the bran rich set of microelements and macroelements such as iron, calcium, magnesium, phosphorus, potassium, zinc, iodine, selenium, chromium, etc. the Introduction in the diet, bran rye contribute to the prevention and treatment of atherosclerosis, diabetes and anemia. They restore blood pressure, reduce blood sugar levels and improve the cardiovascular system. Flour from wholegrain wheat is the main supplier of bread protein and starch, while preserving the maximum of the original nutritional value of the grain, enriched whipped bread macro - and micronutrients. The analysis of the chemical composition of flour from wholegrain wheat, rye and wheat bran leads to the conclusion that the choice of these types of materials suitable for making the recipe whipped bakery products, because their use can increase the content in bread is not only the

Expression of Pinellia pedatisecta Lectin Gene in Transgenic Wheat Enhances Resistance to Wheat Aphids

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Xiaoliang Duan

2018-03-01

Full Text Available Wheat aphids are major pests during the seed filling stage of wheat. Plant lectins are toxic to sap-sucking pests such as wheat aphids. In this study, Pinellia pedatisecta agglutinin (ppa, a gene encoding mannose binding lectin, was cloned, and it shared 92.69% nucleotide similarity and 94% amino acid similarity with Pinellia ternata agglutinin (pta. The ppa gene, driven by the constitutive and phloem-specific ribulose bisphosphate carboxylase small subunit gene (rbcs promoter in pBAC-rbcs-ppa expression vector, was transferred into the wheat cultivar Baofeng104 (BF104 by particle bombardment transformation. Fifty-four T0 transgenic plants were generated. The inheritance and expression of the ppa gene were confirmed by PCR and RT-PCR analysis respectively, and seven homozygous transgenic lines were obtained. An aphid bioassay on detached leaf segments revealed that seven ppa transgenic wheat lines had lower aphid growth rates and higher inhibition rates than BF104. Furthermore, two-year aphid bioassays in isolated fields showed that aphid numbers per tiller of transgenic lines were significantly decreased, compared with wild type BF104. Therefore, ppa could be a strong biotechnological candidate to produce aphid-resistant wheat.

Influence of smoking on colonic gene expression profile in Crohn's disease

DEFF Research Database (Denmark)

Nielsen, Ole Haagen; Bjerrum, Jacob Tveiten; Csillag, Claudio

2009-01-01

the included material: CD smokers (n = 28) or never-smokers (n = 14) as compared to fifteen healthy controls (8 smokers and 7 never-smokers). RNA was isolated and gene expression assessed with Affymetrix GeneChip Human Genome U133 Plus 2.0. Data were analyzed by principal component analysis (PCA), Wilcoxon......BACKGROUND: The development and course of Crohn's disease (CD) is related to both genetic and environmental factors. Smoking has been found to exacerbate the course of CD by increasing the risk of developing fistulas and strictures as well as the need for surgery, possibly because of an interaction...... smokers). AIM: To identify any difference in gene expression of the descending colonic mucosa between smoking and never-smoking CD patients (and controls) by determining genetic expression profiles from microarray analysis. METHODS: Fifty-seven specimens were obtained by routine colonoscopy from...

An evaluation of the genetic-matched pair study design using genome-wide SNP data from the European population

DEFF Research Database (Denmark)

Lu, Timothy Tehua; Lao, Oscar; Nothnagel, Michael

2009-01-01

of cases (76.0%), the BOM of a given individual, based on the complete marker set, came from a different recruitment site than the individual itself. A second marker set, specifically selected for ancestry sensitivity using singular value decomposition, performed even more poorly and was no more capable......Genetic matching potentially provides a means to alleviate the effects of incomplete Mendelian randomization in population-based gene-disease association studies. We therefore evaluated the genetic-matched pair study design on the basis of genome-wide SNP data (309,790 markers; Affymetrix Gene......Chip Human Mapping 500K Array) from 2457 individuals, sampled at 23 different recruitment sites across Europe. Using pair-wise identity-by-state (IBS) as a matching criterion, we tried to derive a subset of markers that would allow identification of the best overall matching (BOM) partner for a given...

Analysis of cell death inducing compounds

DEFF Research Database (Denmark)

Spicker, Jeppe; Pedersen, Henrik Toft; Nielsen, Henrik Bjørn

2007-01-01

Biomarkers for early detection of toxicity hold the promise of improving the failure rates in drug development. In the present study, gene expression levels were measured using full-genome RAE230 version 2 Affymetrix GeneChips on rat liver tissue 48 h after administration of six different compounds......), ornithine aminotransferase (OAT) and Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase) (Cyp2C29). RT-PCR for these three genes was performed and four additional compounds were included for validation. The quantitative RT-PCR analysis confirmed the findings based on the microarray data and using...... the three genes a classification rate of 55 of 57 samples was achieved for the classification of not toxic versus toxic. The single most promising biomarker (OAT) alone resulted in a surprisingly 100% correctly classified samples. OAT has not previously been linked to toxicity and cell death...

A trispecies Aspergillus microarray: Comparative transcriptomics of three Aspergillus species

DEFF Research Database (Denmark)

Andersen, Mikael Rørdam; Vongsangnak, Wanwipa; Panagiotou, Gianni

2008-01-01

The full-genome sequencing of the filamentous fungi Aspergillus nidulans, Aspergillus niger, and Aspergillus oryzae has opened possibilities for studying the cellular physiology of these fungi on a systemic level. As a tool to explore this, we are making available an Affymetrix GeneChip developed...... data identified 23 genes to be a conserved response across Aspergillus sp., including the xylose transcriptional activator XlnR. A promoter analysis of the up-regulated genes in all three species indicates the conserved XInR-binding site to be 5'-GGNTAAA-3'. The composition of the conserved gene......-set suggests that xylose acts as a molecule, indicating the presence of complex carbohydrates such as hemicellulose, and triggers an array of degrading enzymes. With this case example, we present a validated tool for transcriptome analysis of three Aspergillus species and a methodology for conducting cross...

Effect of fatty acids on functional properties of normal wheat and waxy wheat starches: A structural basis.

Science.gov (United States)

Wang, Shujun; Wang, Jinrong; Yu, Jinglin; Wang, Shuo

2016-01-01

The effects of three saturated fatty acids on functional properties of normal wheat and waxy wheat starches were investigated. The complexing index (CI) of normal wheat starch-fatty acid complexes decreased with increasing carbon chain length. In contrast, waxy wheat starch-fatty acid complexes presented much lower CI. V-type crystalline polymorphs were formed between normal wheat starch and three fatty acids, with shorter chain fatty acids producing more crystalline structure. FTIR and Raman spectroscopy presented the similar results with XRD. The formation of amylose-fatty acid complex inhibited granule swelling, gelatinization progression, retrogradation and pasting development of normal wheat starch, with longer chain fatty acids showing greater inhibition. Amylopectin can also form complexes with fatty acids, but the amount of complex was too little to be detected by XRD, FTIR, Raman and DSC. As a consequence, small changes were observed in the functional properties of waxy wheat starch with the addition of fatty acids. Copyright © 2015 Elsevier Ltd. All rights reserved.

Do ancient types of wheat have health benefits compared with modern bread wheat?

Science.gov (United States)

Shewry, Peter R

2018-01-01

A number of studies have suggested that ancient wheats have health benefits compared with modern bread wheat. However, the mechanisms are unclear and limited numbers of genotypes have been studied, with a particular focus on Kamut ® (Khorasan wheat). This is important because published analyses have shown wide variation in composition between genotypes, with further effects of growth conditions. The present article therefore critically reviews published comparisons of the health benefits of ancient and modern wheats, in relation to the selection and growth of the lines, including dietary interventions and comparisons of adverse effects (allergy, intolerance, sensitivity). It is concluded that further studies are urgently required, particularly from a wider range of research groups, but also on a wider range of genotypes of ancient and modern wheat species. Furthermore, although most published studies have made efforts to ensure the comparability of material in terms of growth conditions and processing, it is essential that these are standardised in future studies and this should perhaps be a condition of publication.

Discrimination of volatiles of refined and whole wheat bread containing red and white wheat bran using an electronic nose.

Science.gov (United States)

Sapirstein, Harry D; Siddhu, Silvi; Aliani, Michel

2012-11-01

The principal objective of this study was to evaluate the capability of electronic (E) nose technology to discriminate refined and whole wheat bread made with white or red wheat bran according to their headspace volatiles. Whole wheat flour was formulated with a common refined flour from hard red spring wheat, blended at the 15% replacement level with bran milled from representative samples of one hard red and 2 hard white wheats. A commercial formula was used for breadmaking. Results varied according to the nature of the sample, that is, crust, crumb, or whole slices. Bread crust and crumb were completely discriminated. Crumb of whole wheat bread made with red bran was distinct from other bread types. When misclassified, whole wheat bread crumb with white bran was almost invariably identified as refined flour bread crumb. Using crust as the basis for comparisons, the largest difference in volatiles was between refined flour bread and whole wheat bread as a group. When refined flour bread crust was misclassified, samples tended to be confused with whole white wheat crust. Samples prepared from whole bread slices were poorly discriminated in general. E-nose results indicated that whole wheat bread formulated with white bran was more similar in volatile makeup to refined flour bread compared to whole wheat bread made with red bran. The E-nose appears to be very capable to accommodate differentiation of bread volatiles whose composition varies due to differences in flour or bran type. Consumer preference of bread made using refined flour in contrast to whole wheat flour is partly due to the different aroma of whole wheat bread. This study used an electronic nose to analyze bread volatiles, and showed that whole wheat bread incorporating white bran was different from counterpart bread made using red bran, and was closer in volatile makeup to "white" bread made without bran. Commercial millers and bakers can take advantage of these results to formulate whole wheat flour

Strategies to reduce or prevent wheat coeliacimmunogenicity and wheat sensitivity through food

NARCIS (Netherlands)

Gilissen, L.J.W.J.; Meer, van der I.M.; Smulders, M.J.M.

2016-01-01

Cereals are among the oldest foods of humans. Wheat is one of these. In present times,several syndromes are, whether true or false, increasingly attributed to the consumption of wheat, with increasing costs for medical care and decreasing turnover for the food industry, especially the bakery sector.

Epistatic determinism of durum wheat resistance to the wheat spindle streak mosaic virus.

Science.gov (United States)

Holtz, Yan; Bonnefoy, Michel; Viader, Véronique; Ardisson, Morgane; Rode, Nicolas O; Poux, Gérard; Roumet, Pierre; Marie-Jeanne, Véronique; Ranwez, Vincent; Santoni, Sylvain; Gouache, David; David, Jacques L

2017-07-01

The resistance of durum wheat to the Wheat spindle streak mosaic virus (WSSMV) is controlled by two main QTLs on chromosomes 7A and 7B, with a huge epistatic effect. Wheat spindle streak mosaic virus (WSSMV) is a major disease of durum wheat in Europe and North America. Breeding WSSMV-resistant cultivars is currently the only way to control the virus since no treatment is available. This paper reports studies of the inheritance of WSSMV resistance using two related durum wheat populations obtained by crossing two elite cultivars with a WSSMV-resistant emmer cultivar. In 2012 and 2015, 354 recombinant inbred lines (RIL) were phenotyped using visual notations, ELISA and qPCR and genotyped using locus targeted capture and sequencing. This allowed us to build a consensus genetic map of 8568 markers and identify three chromosomal regions involved in WSSMV resistance. Two major regions (located on chromosomes 7A and 7B) jointly explain, on the basis of epistatic interactions, up to 43% of the phenotypic variation. Flanking sequences of our genetic markers are provided to facilitate future marker-assisted selection of WSSMV-resistant cultivars.

ExonMiner: Web service for analysis of GeneChip Exon array data

Directory of Open Access Journals (Sweden)

Imoto Seiya

2008-11-01

Full Text Available Abstract Background Some splicing isoform-specific transcriptional regulations are related to disease. Therefore, detection of disease specific splice variations is the first step for finding disease specific transcriptional regulations. Affymetrix Human Exon 1.0 ST Array can measure exon-level expression profiles that are suitable to find differentially expressed exons in genome-wide scale. However, exon array produces massive datasets that are more than we can handle and analyze on personal computer. Results We have developed ExonMiner that is the first all-in-one web service for analysis of exon array data to detect transcripts that have significantly different splicing patterns in two cells, e.g. normal and cancer cells. ExonMiner can perform the following analyses: (1 data normalization, (2 statistical analysis based on two-way ANOVA, (3 finding transcripts with significantly different splice patterns, (4 efficient visualization based on heatmaps and barplots, and (5 meta-analysis to detect exon level biomarkers. We implemented ExonMiner on a supercomputer system in order to perform genome-wide analysis for more than 300,000 transcripts in exon array data, which has the potential to reveal the aberrant splice variations in cancer cells as exon level biomarkers. Conclusion ExonMiner is well suited for analysis of exon array data and does not require any installation of software except for internet browsers. What all users need to do is to access the ExonMiner URL http://ae.hgc.jp/exonminer. Users can analyze full dataset of exon array data within hours by high-level statistical analysis with sound theoretical basis that finds aberrant splice variants as biomarkers.

Deoxynivalenol. Derivation of concentration limits in wheat and wheat containing food products

NARCIS (Netherlands)

Pieters MN; Fiolet DCM; Baars AJ; CSR

1999-01-01

The mycotoxin deoxynivalenol (DON) produced by fungi of the Fusarium genus may occur in various cereal crops. A provisional TDI of 1.1 ug per kg body weight was derived to calculate concentration limits for the mycotoxin, deoxynivalenol (DON), in wheat and wheat food products. Children (1-4 years

Aroma of wheat porridge and bread-crumb is influenced by the wheat variety

DEFF Research Database (Denmark)

Starr, Gerrard; Hansen, Åse Solvej; Petersen, Mikael Agerlin

2015-01-01

evaluation, from these eight were selected for bread evaluation. Porridge and bread results were compared. Variations were found in both evaluations. Five odour- and nine flavour descriptors were found to be common to both wheat porridge and bread. The results for two descriptors: "cocoa" and "oat porridge......" were correlated between the wheat porridge and bread samples. Analysis of whole-meal and low-extraction samples revealed that the descriptors "malt", "oat-porridge", "øllebrød", "cocoa" and "grain" mostly characterized wheat bran, while descriptors for "maize", "bean-shoots", "chamomile", "umami...

Pilot Study: Comparison of Sourdough Wheat Bread and Yeast-Fermented Wheat Bread in Individuals with Wheat Sensitivity and Irritable Bowel Syndrome

Directory of Open Access Journals (Sweden)

Reijo Laatikainen

2017-11-01

Full Text Available Many patients suspect wheat as being a major trigger of their irritable bowel syndrome (IBS symptoms. Our aim was to evaluate whether sourdough wheat bread baked without baking improvers and using a long dough fermentation time (>12 h, would result in lower quantities of alpha-amylase/trypsin inhibitors (ATIs and Fermentable, Oligo-, Di-, Mono-saccharides and Polyols (FODMAPs, and would be better tolerated than yeast-fermented wheat bread for subjects with IBS who have a poor subjective tolerance to wheat. The study was conducted as a randomised double-blind controlled 7-day study (n = 26. Tetrameric ATI structures were unravelled in both breads vs. baking flour, but the overall reduction in ATIs to their monomeric form was higher in the sourdough bread group. Sourdough bread was also lower in FODMAPs. However, no significant differences in gastrointestinal symptoms and markers of low-grade inflammation were found between the study breads. There were significantly more feelings of tiredness, joint symptoms, and decreased alertness when the participants ate the sourdough bread (p ≤ 0.03, but these results should be interpreted with caution. Our novel finding was that sourdough baking reduces the quantities of both ATIs and FODMAPs found in wheat. Nonetheless, the sourdough bread was not tolerated better than the yeast-fermented bread.

Impact of Future Climate Change on Wheat Production: A Simulated Case for China’s Wheat System

Directory of Open Access Journals (Sweden)

Dengpan Xiao

2018-04-01

Full Text Available With regard to global climate change due to increasing concentration in greenhouse gases, particularly carbon dioxide (CO2, it is important to examine its potential impact on crop development and production. We used statistically-downscaled climate data from 28 Global Climate Models (GCMs and the Agricultural Production Systems sIMulator (APSIM–Wheat model to simulate the impact of future climate change on wheat production. Two future scenarios (RCP4.5 and RCP8.5 were used for atmospheric greenhouse gas concentrations during two different future periods (2031–2060 referred to as 40S and 2071–2100 referred to as 80S. Relative to the baseline period (1981–2010, the trends in mean daily temperature and radiation significantly increased across all stations under the future scenarios. Furthermore, the trends in precipitation increased under future climate scenarios. Due to climate change, the trend in wheat phenology significantly advanced. The early flowering and maturity dates shortened both the vegetative growth stage (VGP and the whole growth period (WGP. As the advance in the days of maturity was more than that in flowering, the length of the reproductive growth stage (RGP of spring wheat was shortened. However, as the advance in the date of maturity was less than that of flowering, the RGP of winter wheat was extended. When the increase in CO2 concentration under future climate scenarios was not considered, the trend in change in wheat production for the baseline declined. In contrast, under increased CO2 concentration, the trend in wheat yield increased for most of the stations (except for Nangong station under future climatic conditions. Winter wheat and spring wheat evapotranspiration (ET decreased across all stations under the two future climate scenarios. As wheat yield increased with decreasing water consumption (as ET under the future climatic conditions, water use efficiency (WUE significantly improved in the future period.

Expression of Pinellia pedatisecta Lectin Gene in Transgenic Wheat Enhances Resistance to Wheat Aphids

OpenAIRE

Xiaoliang Duan; Qiling Hou; Guoyu Liu; Xiaomeng Pang; Zhenli Niu; Xiao Wang; Yufeng Zhang; Baoyun Li; Rongqi Liang

2018-01-01

Wheat aphids are major pests during the seed filling stage of wheat. Plant lectins are toxic to sap-sucking pests such as wheat aphids. In this study, Pinellia pedatisecta agglutinin (ppa), a gene encoding mannose binding lectin, was cloned, and it shared 92.69% nucleotide similarity and 94% amino acid similarity with Pinellia ternata agglutinin (pta). The ppa gene, driven by the constitutive and phloem-specific ribulose bisphosphate carboxylase small subunit gene (rbcs) promoter in pBAC-rbcs...

Induced spherococcoid hard wheat

International Nuclear Information System (INIS)

Yanev, Sh.

1981-01-01

A mutant has been obtained - a spheroccocoid line -through irradiation of hard wheat seed with fast neutrons. It is distinguished by semispherical glumes and smaller grain; the plants have low stem with erect leaves but with shorter spikes and with lesser number of spikelets than those of the initial cultivar. Good productive tillering and resistance to lodging contributed to 23.5% higher yield. The line was superior to the standard and the initial cultivars by 14.2% as regards protein content, and by up to 22.8% - as to flour gluten. It has been successfully used in hybridization producing high-yielding hard wheat lines resistant to lodging, with good technological and other indicators. The possibility stated is of obtaining a spherococcoid mutant in tetraploid (hard) wheat out of the D-genome as well as its being suited to hard wheat breeding to enhance protein content, resistance to lodging, etc. (author)

Integrated Genomic Analysis of Sézary Syndrome

Directory of Open Access Journals (Sweden)

Xin Mao

2011-01-01

Full Text Available Sézary syndrome (SS is a rare variant of primary cutaneous T-cell lymphoma. Little is known about the underlying pathogenesis of S. To address this issue, we used Affymetrix 10K SNP microarray to analyse 13 DNA samples isolated from 8 SS patients and qPCR with ABI TaqMan SNP genotyping assays for the validation of the SNP microarray results. In addition, we tested the impact of SNP loss of heterozygosity (LOH identified in SS cases on the gene expression profiles of SS cases detected with Affymetrix GeneChip U133A. The results showed: (1 frequent SNP copy number change and LOH involving 1, 2p, 3, 4q, 5q, 6, 7p, 8, 9, 10, 11, 12q, 13, 14, 16q, 17, and 20, (2 reduced SNP copy number at FAT gene (4q35 in 75% of SS cases, and (3 the separation of all SS cases from normal control samples by SNP LOH gene clusters at chromosome regions of 9q31q34, 10p11q26, and 13q11q12. These findings provide some intriguing information for our current understanding of the molecular pathogenesis of this tumour and suggest the possibility of presence of functional SNP LOH in SS tumour cells.

Pelletizing properties of torrefied wheat straw

DEFF Research Database (Denmark)

Stelte, Wolfgang; Nielsen, Niels Peter; Hansen, Hans Ove

2013-01-01

of wheat straw have been analyzed. Laboratory equipment has been used to investigate the pelletizing properties of wheat straw torrefied at temperatures between 150 and 300 °C. IR spectroscopy and chemical analyses have shown that high torrefaction temperatures change the chemical properties of the wheat...

Soft durum wheat - a paradigm shift

Science.gov (United States)

Two traits define most aspects of wheat quality and utilization: kernel texture (hardness) and gluten. The former is far simpler genetically and is controlled by two genes, Puroindoline a and Puroindoline b. Durum wheat lacks puroindolines and has very hard kernels. As such, durum wheat when milled ...

Alterations and abnormal mitosis of wheat chromosomes induced by wheat-rye monosomic addition lines.

Directory of Open Access Journals (Sweden)

Shulan Fu

Full Text Available BACKGROUND: Wheat-rye addition lines are an old topic. However, the alterations and abnormal mitotic behaviours of wheat chromosomes caused by wheat-rye monosomic addition lines are seldom reported. METHODOLOGY/PRINCIPAL FINDINGS: Octoploid triticale was derived from common wheat T. aestivum L. 'Mianyang11'×rye S. cereale L. 'Kustro' and some progeny were obtained by the controlled backcrossing of triticale with 'Mianyang11' followed by self-fertilization. Genomic in situ hybridization (GISH using rye genomic DNA and fluorescence in situ hybridization (FISH using repetitive sequences pAs1 and pSc119.2 as probes were used to analyze the mitotic chromosomes of these progeny. Strong pSc119.2 FISH signals could be observed at the telomeric regions of 3DS arms in 'Mianyang11'. However, the pSc119.2 FISH signals were disappeared from the selfed progeny of 4R monosomic addition line and the changed 3D chromosomes could be transmitted to next generation stably. In one of the selfed progeny of 7R monosomic addition line, one 2D chromosome was broken and three 4A chromosomes were observed. In the selfed progeny of 6R monosomic addition line, structural variation and abnormal mitotic behaviour of 3D chromosome were detected. Additionally, 1A and 4B chromosomes were eliminated from some of the progeny of 6R monosomic addition line. CONCLUSIONS/SIGNIFICANCE: These results indicated that single rye chromosome added to wheat might cause alterations and abnormal mitotic behaviours of wheat chromosomes and it is possible that the stress caused by single alien chromosome might be one of the factors that induced karyotype alteration of wheat.

Quality of shear fractionated wheat gluten – comparison to commercial vital wheat gluten

NARCIS (Netherlands)

Zalm, van der E.E.J.; Goot, van der A.J.; Boom, R.M.

2011-01-01

The functional properties of gluten obtained with a shear-induced separation process, recently proposed by Peighambardoust et al. (2008), are compared with a commercially available vital wheat gluten. Two tests were performed. First, a relatively strong wheat flour, Soissons, was enriched with

Weed Dynamics and Management in Wheat

DEFF Research Database (Denmark)

Jabran, Khawar; Mahmood, Khalid; Melander, Bo

2017-01-01

) chemical weed control; and (vi) integrated weed management strategy in wheat. A critical analysis of recent literature indicated that broadleaved weeds are the most common group of weeds in wheat fields followed by grass weeds, while sedges were rarely noted in wheat fields. Across the globe, the most...

WHEAT PATHOGEN RESISTANCE AND CHITINASE PROFILE

Directory of Open Access Journals (Sweden)

Zuzana Gregorová

2015-02-01

Full Text Available The powdery mildew and leaf rust caused by Blumeria graminis and Puccinia recondita (respectively are common diseases of wheat throughout the world. These fungal diseases greatly affect crop productivity. Incorporation of effective and durable disease resistance is an important breeding objective for wheat improvement. We have evaluated resistance of four bread wheat (Triticum aestivum and four spelt wheat (Triticum spelta cultivars. Chitinases occurrence as well as their activity was determined in leaf tissues. There was no correlation between resistance rating and activity of chitinase. The pattern of chitinases reveals four isoforms with different size in eight wheat cultivars. A detailed understanding of the molecular events that take place during a plant–pathogen interaction is an essential goal for disease control in the future.

Wheat streak mosaic virus coat protein is a determinant for vector transmission by the wheat curl mite

Science.gov (United States)

Wheat streak mosaic virus (WSMV; genus Tritimovirus; family Potyviridae), is transmitted by the wheat curl mite (Aceria tosichella Keifer). The requirement of coat protein (CP) for WSMV transmission by the wheat curl mite was examined using a series of viable deletion and point mutations. Mite trans...

Dissection of the multigenic wheat stem rust resistance present in the Montenegrin spring wheat accession PI 362698

Science.gov (United States)

Research to identify and characterize stem rust resistance genes in common wheat, Triticum aestivum, has been stimulated by the emergence of Ug99-lineage races of the wheat stem rust pathogen, Puccinia graminis f. sp. tritici (Pgt), in Eastern Africa. The Montenegrin spring wheat landrace PI 362698 ...

Cargill: Biotechnology and Value Creation in Wheat

OpenAIRE

Boland, Michael A.

2003-01-01

About 40 percent of the world's food supply came from rice and wheat-based foods. The genome of wheat (a genome is a set of chromosomes) was much larger than those of other crops such as rice. Deciphering the wheat genome was a much more complex process. Wheat had six DNA strands (e.g., humans have only a double-helix DNA strand) and almost twice as many genes as humans. GM wheat would be available for production by 2004. The objective of this case is to describe: segregation and identity-pre...

Improvement of wheat for resistance to Russian Wheat Aphid

International Nuclear Information System (INIS)

Kinyua, M.; Malinga, J.N.; Wanyama, J.; Karanja, L.; Njau, P.; Leo, T.; Alomba, E.

2001-01-01

Breeding for resistance against Russian wheat aphid in Kenya is reported. Results of six of the lines were found to have high to moderate resistance to Russian wheat aphid. Popular lines were susceptible in the greenhouse when subjected to aphid pressure but showed moderate susceptibility when screened under field conditions, indicating that in years or location with low aphid pressure farmers may still get a crop. However in areas of high aphid pressure or bad years they may lose their crop. Consequently, developing resistant/torerant varieties is urgent

Ancestral QTL alleles from wild emmer wheat improve drought resistance and productivity in modern wheat cultivars

Directory of Open Access Journals (Sweden)

Lianne eMerchuk-Ovnat

2016-04-01

Full Text Available Wild emmer wheat (Triticum turgidum ssp. dicoccoides is considered a promising source for improving stress resistances in domesticated wheat. Here we explored the potential of selected quantitative trait loci (QTLs from wild emmer wheat, introgressed via marker-assisted selection, to enhance drought resistance in elite durum (T. turgidum ssp. durum and bread (T. aestivum wheat cultivars. The resultant near-isogenic lines (BC3F3 and BC3F4 were genotyped using SNP array to confirm the introgressed genomic regions and evaluated in two consecutive years under well-watered (690–710 mm and water-limited (290–320 mm conditions. Three of the introgressed QTLs were successfully validated, two in the background of durum wheat cv. Uzan (on chromosomes 1BL and 2BS, and one in the background of bread wheat cvs. Bar Nir and Zahir (chromosome 7AS. In most cases, the QTL x environment interaction was validated in terms of improved grain yield and biomass - specifically under drought (7AS QTL in cv. Bar Nir background, under both treatments (2BS QTL, and a greater stability across treatments (1BL QTL. The results provide a first demonstration that introgression of wild emmer QTL alleles can enhance productivity and yield stability across environments in domesticated wheat, thereby enriching the modern gene pool with essential diversity for the improvement of drought resistance.

Elasticities for U.S. Wheat Food Use by Class

OpenAIRE

Marsh, Thomas L.

2003-01-01

We conceptualize wheat for food use as an input into flour production and derive demand functions to quantify price responsiveness and economic substitutability across wheat classes. Cost, price, and substitution elasticities are estimated for hard red winter, hard red spring, soft red wheat, soft white winter, and durum wheat. In general, hard red winter and spring wheat varieties are much more responsive to their own price than are soft wheat varieties and durum wheat. Morishima elasticitie...

Alterations and Abnormal Mitosis of Wheat Chromosomes Induced by Wheat-Rye Monosomic Addition Lines

Science.gov (United States)

Fu, Shulan; Yang, Manyu; Fei, Yunyan; Tan, Feiquan; Ren, Zhenglong; Yan, Benju; Zhang, Huaiyu; Tang, Zongxiang

2013-01-01

Background Wheat-rye addition lines are an old topic. However, the alterations and abnormal mitotic behaviours of wheat chromosomes caused by wheat-rye monosomic addition lines are seldom reported. Methodology/Principal Findings Octoploid triticale was derived from common wheat T. aestivum L. ‘Mianyang11’×rye S. cereale L. ‘Kustro’ and some progeny were obtained by the controlled backcrossing of triticale with ‘Mianyang11’ followed by self-fertilization. Genomic in situ hybridization (GISH) using rye genomic DNA and fluorescence in situ hybridization (FISH) using repetitive sequences pAs1 and pSc119.2 as probes were used to analyze the mitotic chromosomes of these progeny. Strong pSc119.2 FISH signals could be observed at the telomeric regions of 3DS arms in ‘Mianyang11’. However, the pSc119.2 FISH signals were disappeared from the selfed progeny of 4R monosomic addition line and the changed 3D chromosomes could be transmitted to next generation stably. In one of the selfed progeny of 7R monosomic addition line, one 2D chromosome was broken and three 4A chromosomes were observed. In the selfed progeny of 6R monosomic addition line, structural variation and abnormal mitotic behaviour of 3D chromosome were detected. Additionally, 1A and 4B chromosomes were eliminated from some of the progeny of 6R monosomic addition line. Conclusions/Significance These results indicated that single rye chromosome added to wheat might cause alterations and abnormal mitotic behaviours of wheat chromosomes and it is possible that the stress caused by single alien chromosome might be one of the factors that induced karyotype alteration of wheat. PMID:23936213

Cellulase production using different streams of wheat grain- and wheat straw-based ethanol processes.

Science.gov (United States)

Gyalai-Korpos, Miklós; Mangel, Réka; Alvira, Pablo; Dienes, Dóra; Ballesteros, Mercedes; Réczey, Kati

2011-07-01

Pretreatment is a necessary step in the biomass-to-ethanol conversion process. The side stream of the pretreatment step is the liquid fraction, also referred to as the hydrolyzate, which arises after the separation of the pretreated solid and is composed of valuable carbohydrates along with compounds that are potentially toxic to microbes (mainly furfural, acetic acid, and formic acid). The aim of our study was to utilize the liquid fraction from steam-exploded wheat straw as a carbon source for cellulase production by Trichoderma reesei RUT C30. Results showed that without detoxification, the fungus failed to utilize any dilution of the hydrolyzate; however, after a two-step detoxification process, it was able to grow on a fourfold dilution of the treated liquid fraction. Supplementation of the fourfold-diluted, treated liquid fraction with washed pretreated wheat straw or ground wheat grain led to enhanced cellulase (filter paper) activity. Produced enzymes were tested in hydrolysis of washed pretreated wheat straw. Supplementation with ground wheat grain provided a more efficient enzyme mixture for the hydrolysis by means of the near-doubled β-glucosidase activity obtained.

Pushing Wheat

DEFF Research Database (Denmark)

Sharp, Paul Richard

This paper documents the evolution of variables central to understanding the creation of an Atlantic Economy in wheat between the US and the UK in the nineteenth century. The cointegrated VAR model is then applied to the period 1838-1913 in order to find long-run relationships between these varia......This paper documents the evolution of variables central to understanding the creation of an Atlantic Economy in wheat between the US and the UK in the nineteenth century. The cointegrated VAR model is then applied to the period 1838-1913 in order to find long-run relationships between...

Growing Wheat. People on the Farm.

Science.gov (United States)

Department of Agriculture, Washington, DC. Office of Governmental and Public Affairs.

This booklet, one in a series about life on modern farms, describes the daily life of the Don Riffel family, wheat farmers in Kansas. Beginning with early morning, the booklet traces the family's activities through a typical harvesting day in July, while explaining how a wheat farm is run. The booklet also briefly describes the wheat growing…

Alien DNA introgression and wheat DNA rearrangements in a stable wheat line derived from the early generation of distant hybridization.

Science.gov (United States)

Zhang, Lianquan; Liu, Dengcai; Yan, Zehong; Zheng, Youliang

2005-10-01

Polyploidy has been found to be common in plants. Bread or common wheat (Triticum aestivum L., 2n=42) is a good example of allopolyploid made up of three diploid genomes A, B and D. In recent years, by the study of mimicking the origination of common wheat, it was found that changes of DNA sequence and gene expression occurred at the early stages of artificial allohexaploid between tetraploid wheat and Aegilops tauschii, which was probably favorable to genetic diploidization of new synthetic hexaploid wheat. Common wheat 99L2 is a new line stable in genetic, which was derived from the early self-pollinated generation of wide hybrids between common wheat and rye. In this study, it was found that at least two rye DNA segments had been introgressed into 99L2. This result suggested that a mechanism of alien DNA introgression may exist, which was different from the traditional mechanism of chromosome pairing and DNA recombination between wheat and alien species. Meanwhile, during the introgression process of alien rye DNA segments, the changes in DNA sequences of wheat itself occurred.

Extracellular microRNA signature in chronic kidney disease.

Science.gov (United States)

Muralidharan, Jagdeesan; Ramezani, Ali; Hubal, Monica; Knoblach, Susan; Shrivastav, Shashi; Karandish, Sara; Scott, Richard; Maxwell, Nirmal; Ozturk, Savas; Beddhu, Srinivasan; Kopp, Jeffrey B; Raj, Dominic S

2017-06-01

MicroRNAs (miRNAs) are noncoding RNAs that regulate posttranscriptional gene expression. In this study we characterized the circulating and urinary miRNA pattern associated with reduced glomerular filtration rate, using Affymetrix GeneChip miR 4.0 in 28 patients with chronic kidney disease (CKD). Top miRNA discoveries from the human studies were validated in an Alb/TGFβ mouse model of CKD, and in rat renal proximal tubular cells (NRK52E) exposed to TGFβ1. Plasma and urinary levels of procollagen III N-terminal propeptide and collagen IV were elevated in patients with decreased estimated glomerular filtration rate (eGFR). Expression of 384 urinary and 266 circulatory miRNAs were significantly different between CKD patients with eGFR ≥30 vs. kidney fibrosis, and specific urinary and plasma miRNA profile may have diagnostic and prognostic utility in CKD. Copyright © 2017 the American Physiological Society.

Brain response to traumatic brain injury in wild-type and interleukin-6 knockout mice: a microarray analysis

DEFF Research Database (Denmark)

Poulsen, Christian Bjørn; Penkowa, Milena; Borup, Rehannah

2005-01-01

Traumatic injury to the brain is one of the leading causes of injury-related death or disability. Brain response to injury is orchestrated by cytokines, such as interleukin (IL)-6, but the full repertoire of responses involved is not well known. We here report the results obtained with microarrays...... in wild-type and IL-6 knockout mice subjected to a cryolesion of the somatosensorial cortex and killed at 0, 1, 4, 8 and 16 days post-lesion. Overall gene expression was analyzed by using Affymetrix genechips/oligonucleotide arrays with approximately 12,400 probe sets corresponding to approximately 10...... in the initial tissue injury and later regeneration of the parenchyma. IL-6 deficiency showed a dramatic effect in the expression of many genes, especially in the 1 day post-lesion timing, which presumably underlies the poor capacity of IL-6 knockout mice to cope with brain damage. The results highlight...

Overexpression of wheat lipid transfer protein gene TaLTP5 increases resistances to Cochliobolus sativus and Fusarium graminearum in transgenic wheat.

Science.gov (United States)

Zhu, Xiuliang; Li, Zhao; Xu, Huijun; Zhou, Miaoping; Du, Lipu; Zhang, Zengyan

2012-08-01

The fungus Cochliobolus sativus is the main pathogen of common root rot, a serious soil-borne disease of wheat (Triticum aestivum L.). The fungus Fusarium graminearum is the primary pathogen of Fusarium head blight, a devastating disease of wheat worldwide. In this study, the wheat lipid transfer protein gene, TaLTP5, was cloned and evaluated for its ability to suppress disease development in transgenic wheat. TaLTP5 expression was induced after C. sativus infection. The TaLTP5 expression vector, pA25-TaLTP5, was constructed and bombarded into Chinese wheat variety Yangmai 18. Six TaLTP5 transgenic wheat lines were established and characterized. PCR and Southern blot analyses indicated that the introduced TaLTP5 gene was integrated into the genomes of six transgenic wheat lines by distinct patterns, and heritable. RT-PCR and real-time quantitative RT-PCR revealed that the TaLTP5 gene was over-expressed in the transgenic wheat lines compared to segregants lacking the transgene and wild-type wheat plants. Following challenge with C. sativus or F. graminearum, all six transgenic lines overexpressing TaLTP5 exhibited significantly enhanced resistance to both common root rot and Fusarium head blight compared to the untransformed wheat Yangmai 18.

Comparison of Enzyme-Linked Immunosorbent Assay, Surface Plasmon Resonance and Biolayer Interferometry for Screening of Deoxynivalenol in Wheat and Wheat Dust

Directory of Open Access Journals (Sweden)

Melanie Sanders

2016-04-01

Full Text Available A sample preparation method was developed for the screening of deoxynivalenol (DON in wheat and wheat dust. Extraction was carried out with water and was successful due to the polar character of DON. For detection, an enzyme-linked immunosorbent assay (ELISA was compared to the sensor-based techniques of surface plasmon resonance (SPR and biolayer interferometry (BLI in terms of sensitivity, affinity and matrix effect. The matrix effects from wheat and wheat dust using SPR were too high to further use this screenings method. The preferred ELISA and BLI methods were validated according to the criteria established in Commission Regulation 519/2014/EC and Commission Decision 2002/657/EC. A small survey was executed on 16 wheat lots and their corresponding dust samples using the validated ELISA method. A linear correlation (r = 0.889 was found for the DON concentration in dust versus the DON concentration in wheat (LOD wheat: 233 μg/kg, LOD wheat dust: 458 μg/kg.

End-use quality of soft kernel durum wheat

Science.gov (United States)

Kernel texture is a major determinant of end-use quality of wheat. Durum wheat has very hard kernels. We developed soft kernel durum wheat via Ph1b-mediated homoeologous recombination. The Hardness locus was transferred from Chinese Spring to Svevo durum wheat via back-crossing. ‘Soft Svevo’ had SKC...

21 CFR 137.205 - Bromated whole wheat flour.

Science.gov (United States)

2010-04-01

... 21 Food and Drugs 2 2010-04-01 2010-04-01 false Bromated whole wheat flour. 137.205 Section 137... Cereal Flours and Related Products § 137.205 Bromated whole wheat flour. Bromated whole wheat flour... of ingredients, prescribed for whole wheat flour by § 137.200, except that potassium bromate is added...

Wheat yield dynamics: a structural econometric analysis.

Science.gov (United States)

Sahin, Afsin; Akdi, Yilmaz; Arslan, Fahrettin

2007-10-15

In this study we initially have tried to explore the wheat situation in Turkey, which has a small-open economy and in the member countries of European Union (EU). We have observed that increasing the wheat yield is fundamental to obtain comparative advantage among countries by depressing domestic prices. Also the changing structure of supporting schemes in Turkey makes it necessary to increase its wheat yield level. For this purpose, we have used available data to determine the dynamics of wheat yield by Ordinary Least Square Regression methods. In order to find out whether there is a linear relationship among these series we have checked each series whether they are integrated at the same order or not. Consequently, we have pointed out that fertilizer usage and precipitation level are substantial inputs for producing high wheat yield. Furthermore, in respect for our model, fertilizer usage affects wheat yield more than precipitation level.

The International Heat Stress Genotype Experiment for modeling wheat response to heat: field experiments and AgMIP-Wheat multi-model simulations

NARCIS (Netherlands)

Martre, P.; Reynolds, M.P.; Asseng, S.; Ewert, F.; Alderman, P.D.; Cammarano, D.; Maiorano, Andrea; Ruane, A.C.; Aggarwal, P.K.; Anothai, J.; Supit, I.; Wolf, J.

2017-01-01

The data set contains a portion of the International Heat Stress Genotype Experiment (IHSGE) data used in the AgMIP-Wheat project to analyze the uncertainty of 30 wheat crop models and quantify the impact of heat on global wheat yield productivity. It includes two spring wheat cultivars grown during

Sensibility of different wheat varieties (strains) to Ar+ implantation

International Nuclear Information System (INIS)

Cui Huanhu; Jing Hua; Ma Aiping; Kang Xiuli; Yang Liping; Huang Mingjing; Ma Buzhou; Shanxi Academy of Agricultural Sciences, Taiyuan

2005-01-01

The sensibility of different wheat varieties (strains) to Ar + implantation was studied. The results showed that the survival rate of 21 wheat varieties (strains) at the dose of 6 x 10 16 Ar + /cm 2 could be divided into five groups: surplus sensitive varieties (strains), sensitive varieties (strains), transitional varieties (strains), obtuse varieties (strains) and surplus obtuse varieties (strains). The sensibility of wheat varieties (strains) to Ar + injection is high-moisture-fertility wheat varieties (strains) > medium-moisture-fertility wheat varieties (strains) > dry land wheat varieties (strains). The study has provided theoretical basis in induced mutation medial lethal dose of different wheat varieties (strains) to Ar + implantation. (authors)

Biotechnology in wheat improvement in Kenya

International Nuclear Information System (INIS)

Karanja, L.; Kinyua, M.G.; Njau, P.N.; Maling'a, J.

2001-01-01

Use of double haploid (DH) and mutation techniques in breeding wheat lines and varieties tolerant to drought, acid soils and resistant to Russian Wheat Aphid (RWA) at the National Plant Breeding Research Center in the last 4 years, is reported. The wheat variety, ''Pasa'' irradiated in 1996 is reported to have undergone selection process through yield trials in 1999-2000. Work done in the year 2000 is mainly described

Genetic effects of feeding irradiated wheat to mice

International Nuclear Information System (INIS)

Vijayalaxmi

1976-01-01

The effects of feeding irradiated wheat in mice on bone marrow and testis chromosomes, germ cell numbers and dominant lethal mutations were investigated. Feeding of freshly irradiated wheat resulted in significantly increased incidence of polyploid cells in bone marrow, aneuploid cells in testis, reduction in number of spermatogonia of types A, B and resting primary spermatocytes as well as a higher mutagenic index. Such a response was not observed when mice were fed stored irradiated wheat. Also there was no difference between the mice fed un-irradiated wheat and stored irradiated wheat. (author)

Durum wheat quality prediction in Mediterranean environments

DEFF Research Database (Denmark)

Toscano, P.; Gioli, B.; Genesio, L.

2014-01-01

Durum wheat is one of the most important agricultural crops in the Mediterranean area. In addition to yield, grain quality is very important in wheat markets because of the demand for high-quality end products such as pasta, couscous and bulgur wheat. Grain quality is directly affected by several...

[Effects of different fertilization regimes on weed communities in wheat fields under rice-wheat cropping system].

Science.gov (United States)

Yuan, Fang; Li, Yong; Li, Fen-hua; Sun, Guo-jun; Han, Min; Zhang, Hai-yan; Ji, Zhong; Wu, Chen-yu

2016-01-01

To reveal the effects of different fertilization regimes on weed communities in wheat fields under a rice-wheat rotation system, a survey was conducted before wheat harvest in 2014 after a 4-year long-term recurrent fertilization scheme. Weed species types, density, height and diversity index under different fertilization and straw-returning schemes in wheat fields were studied and complemented with a canonical correspondence analysis on weed community distribution and soil nutrient factors. Twenty weed species were recorded among 36 wheat fields belonging to 19 genera and 11 families. Beckmannia syzigachne, Hemistepta lyrata, Malachium aquaticum and Cnidium monnieri were widely distributed throughout the sampled area. Long-term fertilization appeared to reduce weed species richness and density, particularly for broadleaf weeds, but increased weed height. Diversity and evenness indices of weed communities were lower and dominance indices were higher in fields where chemical fertilizers were applied alone or combined with organic fertilizers, especially, where organic-inorganic compound fertilizer was used, in which it readily caused the outbreak of a dominant species and severe damage. Conversely, diversity and evenness indices of weed communities were higher and dominance indices were lower when the straw was returned to the field combined with chemical or organic fertilizers, in which weed community structures were complex and stable with lower weed density. Under these conditions weeds only caused slight reduction of wheat growth.

Evaluation of alternative planting strategies to reduce wheat stem sawfly (Hymenoptera: Cephidae) damage to spring wheat in the northern Great Plains.

Science.gov (United States)

Beres, B L; Cárcamo, H A; Bremer, E

2009-12-01

Wheat, Triticum aestivum L., producers are often reluctant to use solid-stemmed wheat cultivars resistant to wheat stem sawfly, Cephus cinctus Norton (Hymenoptera: Cephidae), due to concerns regarding yield, efficacy or market opportunities. We evaluated the impact of several planting strategies on wheat yield and quality and wheat stem sawfly infestation at two locations over a three-year period. Experimental units consisted of large plots (50 by 200 m) located on commercial farms adjacent to wheat stem sawfly-infested fields. Compared with a monoculture of a hollow-stemmed cultivar ('AC Barrie'), planting a monoculture of a solid-stemmed cultivar ('AC Eatonia') increased yield by an average of 16% (0.4 mg ha(-1)) and increased the grade of wheat by one unit at the two most heavily infested site-years. Planting a 1:1 blend of AC Eatonia and AC Barrie increased yield by an average of 11%, whereas planting 20- or 40-m plot margins to AC Eatonia increased yield by an average of 8%. High wheat stem sawfly pressure limited the effectiveness of using resistant cultivars in field margins because plants were often infested beyond the plot margin, with uniform infestation down the length of the plots at the two most heavily infested site-years. The effectiveness of AC Eatonia to reduce wheat stem sawfly survivorship was modest in this study, probably due to weather-related factors influencing pith expression and to the high abundance of wheat stem sawfly. Greater benefits from planting field margins to resistant cultivars or planting a blend of resistant and susceptible cultivars might be achievable under lower wheat stem sawfly pressure.

Wheat Yield Trend and Soil Fertility Status in Long Term Rice-Rice-Wheat Cropping System

Directory of Open Access Journals (Sweden)

Nabin Rawal

2015-12-01

Full Text Available A long-term soil fertility experiment under rice-rice-wheat system was performed to evaluate the long term effects of inorganic fertilizer and manure applications on soil properties and grain yield of wheat. The experiment began since 1978 was laid out in randomized complete block design with 9 treatments replicated 3 times. From 1990 onwards, periodic modifications have been made in all the treatments splitting the plots in two equal halves of 4 x 3 m2 leaving one half as original. In the original treatments, recent data revealed that the use of Farm Yard Manure (FYM @10 t ha-1 gave significantly (P≤0.05 higher yield of 2.3 t ha-1 in wheat, whereas control plot gave the lowest grain yield of 277 kg ha-1. Similarly, in the modified treatments, the use of FYM @10 t ha-1 along with inorganic Nitrogen (N and Potassium oxide (K2O @ 50 kg ha-1 produced significantly (P≤0.05 the highest yield of 2.4 t/ha in wheat. The control plot with an indigenous nutrient supply only produced wheat yield of 277 kg ha-1 after 35th year completion of rice-rice-wheat system. A sharp decline in wheat yields was noted in minus N, phosphorus (P, Potassium (K treatments during recent years. Yields were consistently higher in the N:P2O5:K2O and FYM treatments than in treatments, where one or more nutrients were lacking. The application of P2O5 and K2O caused a partial recovery of yield in P and K deficient plots. There was significant (P≤0.05 effect of use of chemical fertilizers and manure on soil properties. The soil analysis data showed an improvement in soil pH (7.8, soil organic matter (4.1%, total N content (0.16%, available P (503.5 kg P2O5 ha-1 and exchangeable K (137.5 kg K2O ha-1 in FYM applied treatments over all other treatments. The findings showed that the productivity of the wheat can be increased and sustained by improving nutrient through the integrated use of organic and inorganic manures in long term.

[Population dynamics of ground carabid beetles and spiders in a wheat field along the wheat-alfalfa interface and their response to alfalfa mowing].

Science.gov (United States)

Liu, Wen-Hui; Hu, Yi-Jun; Hu, Wen-Chao; Hong, Bo; Guan, Xiao-Qing; Ma, Shi-Yu; He, Da-Han

2014-09-01

Taking the wheat-alfalfa and wheat-wheat interfaces as model systems, sampling points were set by the method of pitfall trapping in the wheat field at the distances of 3 m, 6 m, 9 m, 12 m, 15 m, 18 m, 21 m, 24 m, and 27 m from the interface. The species composition and abundance of ground carabid beetles and spiders captured in pitfalls were investigated. The results showed that, to some extent there was an edge effect on species diversity and abundance of ground carabid beetles and spiders along the two interfaces. A marked edge effect was observed between 15 m and 18 m along the alfalfa-wheat interface, while no edge effect was found at a distance over 20 m. The edge effect along the wheat-wheat interface was weaker in comparison to the alfalfa-wheat interface. Alfalfa mowing resulted in the migration of a large number of ground carabid beetles and spiders to the adjacent wheat filed. During ten days since mowing, both species and abundance of ground carabid beetles and spiders increased in wheat filed within the distance of 20 m along the alfalfa-wheat interface. The spatial distribution of species diversity of ground beetles and spiders, together with the population abundance of the dominant Chlaenius pallipes and Pardosa astrigera, were depicted, which could directly indicate the migrating process of natural enemy from alfalfa to wheat field.

Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns

Directory of Open Access Journals (Sweden)

Hayashizaki Yoshihide

2009-06-01

Full Text Available Abstract Background Wheat is an allopolyploid plant that harbors a huge, complex genome. Therefore, accumulation of expressed sequence tags (ESTs for wheat is becoming particularly important for functional genomics and molecular breeding. We prepared a comprehensive collection of ESTs from the various tissues that develop during the wheat life cycle and from tissues subjected to stress. We also examined their expression profiles in silico. As full-length cDNAs are indispensable to certify the collected ESTs and annotate the genes in the wheat genome, we performed a systematic survey and sequencing of the full-length cDNA clones. This sequence information is a valuable genetic resource for functional genomics and will enable carrying out comparative genomics in cereals. Results As part of the functional genomics and development of genomic wheat resources, we have generated a collection of full-length cDNAs from common wheat. By grouping the ESTs of recombinant clones randomly selected from the full-length cDNA library, we were able to sequence 6,162 independent clones with high accuracy. About 10% of the clones were wheat-unique genes, without any counterparts within the DNA database. Wheat clones that showed high homology to those of rice were selected in order to investigate their expression patterns in various tissues throughout the wheat life cycle and in response to abiotic-stress treatments. To assess the variability of genes that have evolved differently in wheat and rice, we calculated the substitution rate (Ka/Ks of the counterparts in wheat and rice. Genes that were preferentially expressed in certain tissues or treatments had higher Ka/Ks values than those in other tissues and treatments, which suggests that the genes with the higher variability expressed in these tissues is under adaptive selection. Conclusion We have generated a high-quality full-length cDNA resource for common wheat, which is essential for continuation of the

Biolistic- and Agrobacterium-mediated transformation protocols for wheat.

Science.gov (United States)

Tamás-Nyitrai, Cecília; Jones, Huw D; Tamás, László

2012-01-01

After rice, wheat is considered to be the most important world food crop, and the demand for high-quality wheat flour is increasing. Although there are no GM varieties currently grown, wheat is an important target for biotechnology, and we anticipate that GM wheat will be commercially available in 10-15 years. In this chapter, we summarize the main features and challenges of wheat transformation and then describe detailed protocols for the production of transgenic wheat plants both by biolistic and Agrobacterium-mediated DNA-delivery. Although these methods are used mainly for bread wheat (Triticum aestivum L.), they can also be successfully applied, with slight modifications, to tetraploid durum wheat (T. turgidum L. var. durum). The appropriate size and developmental stage of explants (immature embryo-derived scutella), the conditions to produce embryogenic callus tissues, and the methods to regenerate transgenic plants under increasing selection pressure are provided in the protocol. To illustrate the application of herbicide selection system, we have chosen to describe the use of the plasmid pAHC25 for biolistic transformation, while for Agrobacterium-mediated transformation the binary vector pAL156 (incorporating both the bar gene and the uidA gene) has been chosen. Beside the step-by-step methodology for obtaining stably transformed and normal fertile plants, procedures for screening and testing transgenic wheat plants are also discussed.

The pangenome of hexaploid bread wheat.

Science.gov (United States)

Montenegro, Juan D; Golicz, Agnieszka A; Bayer, Philipp E; Hurgobin, Bhavna; Lee, HueyTyng; Chan, Chon-Kit Kenneth; Visendi, Paul; Lai, Kaitao; Doležel, Jaroslav; Batley, Jacqueline; Edwards, David

2017-06-01

There is an increasing understanding that variation in gene presence-absence plays an important role in the heritability of agronomic traits; however, there have been relatively few studies on variation in gene presence-absence in crop species. Hexaploid wheat is one of the most important food crops in the world and intensive breeding has reduced the genetic diversity of elite cultivars. Major efforts have produced draft genome assemblies for the cultivar Chinese Spring, but it is unknown how well this represents the genome diversity found in current modern elite cultivars. In this study we build an improved reference for Chinese Spring and explore gene diversity across 18 wheat cultivars. We predict a pangenome size of 140 500 ± 102 genes, a core genome of 81 070 ± 1631 genes and an average of 128 656 genes in each cultivar. Functional annotation of the variable gene set suggests that it is enriched for genes that may be associated with important agronomic traits. In addition to variation in gene presence, more than 36 million intervarietal single nucleotide polymorphisms were identified across the pangenome. This study of the wheat pangenome provides insight into genome diversity in elite wheat as a basis for genomics-based improvement of this important crop. A wheat pangenome, GBrowse, is available at http://appliedbioinformatics.com.au/cgi-bin/gb2/gbrowse/WheatPan/, and data are available to download from http://wheatgenome.info/wheat_genome_databases.php. © 2017 The Authors The Plant Journal © 2017 John Wiley & Sons Ltd.

Lipase inactivation in wheat germ by gamma irradiation

International Nuclear Information System (INIS)

Jha, Pankaj Kumar; Kudachikar, V.B.; Kumar, Sourav

2013-01-01

An attempt was made to improve the shelf life of wheat germ by optimizing processing conditions involving γ-irradiation. Studies were carried out to investigate the effect of γ-irradiation (0–30 kGy doses) on the chemical composition of wheat germ with respect to variation in moisture, total ash, crude fat, free fatty acid, protein and lipase activity. The results demonstrate that shelf stability of wheat germ was achieved by inactivation of lipase at doses of γ-irradiation greater than 12 kGy. - Highlights: Ø γ-irradiation was found to inactivate Lipase present in Wheat Germ. Ø The treatment did not result in significant changes in Total Ash, Moisture and Protein Content of Wheat Germ. Ø The irradiation at 30 kGy resulted in 31.2 % inactivation of Lipase in Wheat Germ

(Neovossia indica ) resistance in wheat

Indian Academy of Sciences (India)

Unknown

Screening and multiplication of different wheat varieties under laboratory conditions using in vitro culture techniques may speed up the resistance breeding programmes. Hence, the present investigations were planned to study the nature and magnitude of gene effects of inhibition zone formed by the wheat embryos, callus-.

Unfolding the potential of wheat cultivar mixtures

DEFF Research Database (Denmark)

Borg, J.; Kiær, Lars Pødenphant; Lecarpentier, C.

2018-01-01

and they are not encouraged by advisory services. Based on the methodology developed by Kiær et al. (2009), we achieved a meta-analysis of cultivar mixtures in wheat. Among the 120 publications dedicated to wheat, we selected 32 studies to analyze various factors that may condition the success or failure of wheat mixtures...

The International Heat Stress Genotype Experiment for modeling wheat response to heat: field experiments and AgMIP-Wheat multi-model simulations

DEFF Research Database (Denmark)

Martre, Pierre; Reynolds, Matthew; Asseng, Senthold

2017-01-01

The data set contains a portion of the International Heat Stress Genotype Experiment (IHSGE) data used in the AgMIP-Wheat project to analyze the uncertainty of 30 wheat crop models and quantify the impact of heat on global wheat yield productivity. It includes two spring wheat cultivars grown...... dates. Data include local daily weather data, soil characteristics and initial soil conditions, crop measurements (anthesis and maturity dates, anthesis and final total above ground biomass, final grain yields and yields components), and cultivar information. Simulations include both daily in-season...... and end-of-season results from 30 wheat models....

WHITE WHEAT MARKET AND STRATEGY ANALYSIS FOR NORTH DAKOTA

OpenAIRE

Janzen, Edward L.; Wilson, William W.

2001-01-01

There is a growing interest and a perceived demand for hard white (HW) wheat to satisfy the needs of the growing Asian noodle market which is currently dominated by Australia. The wheat industry is reviewed with attention to U.S. and Australian production and international markets for white wheat. Quality issues and target markets/market development are discussed. Economic issues associated with production of HW wheat in hard red spring (HRS) wheat producing areas, primarily North Dakota, are...

Acceptability of Noodles Produced from Blends of Wheat, Acha and ...

African Journals Online (AJOL)

Acha (Digitaria exilis) and soybean (Glycine max) were processed into flours and used to substitute wheat flour (Titicum aestivm) as a composite flour at different proportions of 100:0:0 (Wheat); 75:25:25 (Wheat: Acha: Soybean); 75:25 (Wheat: Acha); 75:25 (Wheat: Soybean) and 50:50 (Acha: soybean). The formulated ...

Occupational allergic multiorgan disease induced by wheat flour

OpenAIRE

Gómez Torrijos, Elisa; Rodríguez Sanchez, Joaquín; Diaz Perales, Araceli; García, R.; Feo-Brito, F.; García, C.; Pineda, Fernando; Quirce, Santiago

2015-01-01

Bakers are repeatedly exposed to wheat flour (WF) and may develop sensitization and occupational rhinoconjunctivitis and/or asthma to WF allergens.1 Several wheat proteins have been identified as causative allergens of occupational respiratory allergy in bakery workers.1 Testing of IgE reactivity in patients with different clinical profiles of wheat allergy (food allergy, wheat-dependent exercise-induced anaphylaxis, and baker's asthma) to salt-soluble and salt-insoluble protein fractions fro...

BRS 374 – Wheat cultivar

Directory of Open Access Journals (Sweden)

Eduardo Caierão

2013-01-01

Full Text Available BRS 374 is a wheat cultivar developed by Embrapa. It resulted from a cross between the F1 generation of PF 88618/Coker80.33 and Frontana/Karl. BRS 374 belongs to the soft wheat class, has a low plant height, a high potential grain yield, andwhite flour.

Antifungal properties of wheat histones (H1-H4) and purified wheat histone H1

Science.gov (United States)

Wheat (Triticum sp.) histones H1, H2, H3, and H4 were extracted. H1 was further purified. Their activities against fungi with varying degrees of wheat pathogenicity were determined. They included Aspergillus flavus, A. fumigatus, A. niger, F. oxysporum, F. verticillioides, F. solani, F. graminearu...

Introgression of novel traits from a wild wheat relative improves drought adaptation in wheat.

Science.gov (United States)

Placido, Dante F; Campbell, Malachy T; Folsom, Jing J; Cui, Xinping; Kruger, Greg R; Baenziger, P Stephen; Walia, Harkamal

2013-04-01

Root architecture traits are an important component for improving water stress adaptation. However, selection for aboveground traits under favorable environments in modern cultivars may have led to an inadvertent loss of genes and novel alleles beneficial for adapting to environments with limited water. In this study, we elucidate the physiological and molecular consequences of introgressing an alien chromosome segment (7DL) from a wild wheat relative species (Agropyron elongatum) into cultivated wheat (Triticum aestivum). The wheat translocation line had improved water stress adaptation and higher root and shoot biomass compared with the control genotypes, which showed significant drops in root and shoot biomass during stress. Enhanced access to water due to higher root biomass enabled the translocation line to maintain more favorable gas-exchange and carbon assimilation levels relative to the wild-type wheat genotypes during water stress. Transcriptome analysis identified candidate genes associated with root development. Two of these candidate genes mapped to the site of translocation on chromosome 7DL based on single-feature polymorphism analysis. A brassinosteroid signaling pathway was predicted to be involved in the novel root responses observed in the A. elongatum translocation line, based on the coexpression-based gene network generated by seeding the network with the candidate genes. We present an effective and highly integrated approach that combines root phenotyping, whole-plant physiology, and functional genomics to discover novel root traits and the underlying genes from a wild related species to improve drought adaptation in cultivated wheat.

Production of ethanol from wheat straw

Directory of Open Access Journals (Sweden)

Smuga-Kogut Małgorzata

2015-09-01

Full Text Available This study proposes a method for the production of ethanol from wheat straw lignocellulose where the raw material is chemically processed before hydrolysis and fermentation. The usefulness of wheat straw delignification was evaluated with the use of a 4:1 mixture of 95% ethanol and 65% HNO3 (V. Chemically processed lignocellulose was subjected to enzymatic hydrolysis to produce reducing sugars, which were converted to ethanol in the process of alcoholic fermentation. Chemical processing damages the molecular structure of wheat straw, thus improving ethanol yield. The removal of lignin from straw improves fermentation by eliminating lignin’s negative influence on the growth and viability of yeast cells. Straw pretreatment facilitates enzymatic hydrolysis by increasing the content of reducing sugars and ethanol per g in comparison with untreated wheat straw.

Impact of improved wheat technology adoption on productivity and ...

African Journals Online (AJOL)

Wheat (Triticum aestivum L.) is one of the most important cereal crops cultivated in wide range of agro-ecologies in Eastern Africa. However, wheat productivity has remained low. This study was carried out in Ethiopia Aris Zone to determine the level and impact of adoption of improved wheat varieties on wheat productivity ...

Catering Gluten-Free When Simultaneously Using Wheat Flour.

Science.gov (United States)

Miller, Kathryn; McGough, Norma; Urwin, Heidi

2016-02-01

A European law on gluten-free (GF) labeling came into force in 2012, covering foods sold prepacked and in food service establishments, and a similar U.S. Food and Drug Administration (FDA) regulation covers GF labeling from August 2014. Gluten is found in the grains wheat, rye, and barley. A common source of gluten in the kitchen is wheat flour. This research aimed to determine variables that have a significant effect on gluten contamination in commercial kitchens when wheat flour is in use and to establish controls necessary to assure GF production. A pilot study was used to test the following hypotheses: (i) increasing duration of exposure to wheat flour would increase gluten contamination, (ii) increasing distance between the site of preparation and the site of wheat flour would reduce gluten contamination, (iii) the use of a ventilation hood would decrease gluten contamination, and (iv) the use of a barrier segregating the site of preparation of a GF meal and the use of wheat flour would decrease gluten contamination. Petri dishes containing GF rice pudding were placed in three directions at increasing distances (0.5 to 2 m) from a site of wheat flour use. A barrier was in place between a third of samples and the site of wheat flour. After wheat flour was handled for 0.5 and 4.0 h, petri dishes were sealed and the contents were analyzed for gluten. The experiment was duplicated with the ventilation hood on and off. The pilot study revealed that a distance of 2 m from the use of wheat flour was required to control gluten contamination at ≤20 ppm if wheat flour had been in use for 4.0 h. The identified control of distance was tested in five different study sites. In each of the study sites, a test meal was prepared a minimum of 2 m away from the site of wheat flour use. Although kitchens vary and must be considered individually, the established control of a minimum 2 m distance, along with good hygiene practices, was found to be effective in preparing GF meals

Heat tolerance in wheat

DEFF Research Database (Denmark)

Sharma, Dew Kumari

As a consequence of global climate change, heat stress together with other abiotic stresses will remain an important determinant of future food security. Wheat (Triticum aestivum L.) is the third most important crop of the world feeding one third of the world population. Being a crop of temperate...... climate, wheat is sensitive to heat stress. We need to understand how our crops will perform in these changing climatic conditions and how we can develop varieties, which are more tolerant. The PhD study focussed on understanding heat tolerance in wheat with a combined approach of plant physiology...... and quantitative genetics in particular, plant phenotyping based quantitative trait loci (QTL) discovery for a physiological trait under heat stress. Chlorophyll a fluorescence trait, Fv/Fm was used as a phenotyping tool, as it reflects the effect of heat stress on maximum photochemical efficiency of photosystem...

Asymmetric Price Transmission in Indonesia's Wheat Flour Market

OpenAIRE

Varela, Gonzalo J.; Taniguchi, Kiyoshi

2014-01-01

Data indicate that its domestic price in Indonesia has been increasing regardless of movements in the international price of wheat. A test for asymmetric price transmission from international wheat to domestic wheat flour markets is conducted using an error correction model and find the presence of asymmetric price transmission. The upward adjustment in the domestic price of wheat flour is much faster than its adjustment downward when it deviates from long-run equilibrium. Our results are rob...

Dynamic Network Reconstruction from Gene Expression Data Describing the Effect of LiCl Stimulation on Hepatocytes

Directory of Open Access Journals (Sweden)

Zellmer Sebastian

2005-12-01

Full Text Available Wnt/β-catenin signalling plays an important role in zonation of liver parenchyma and in patterning of hepatocyte heterogeneity. A characteristic marker of this heterogeneity is glutamine synthetase, which is expressed only in a subset of pericentrally located hepatocytes. To investigate, whether and how the Wnt/β-catenin signalling pathway is involved a culture of hepatocytes was stimulated by LiCl. This resulted in an increase in the specific GS activity, indicating that the Wnt/β-catenin pathway may participate in regulating GS levels. Affymetrix GeneChip oligonucleotide arrays were used to monitor the gene expression changes during a period from 2 to 24 hours after stimulation by LiCl. Samples from a cultivation without stimulation were used as controls. Based on the gene expression profiles a hypothetic signal transduction network was constructed by a reverse engineering algorithm. The network robustness was tested and the most stable structure was identified.

Profile of differentially expressed genes mediated by the type III epidermal growth factor receptor mutation expressed in a small-cell lung cancer cell line

DEFF Research Database (Denmark)

Pedersen, M.W.; Andersen, Thomas Thykjær; Ørntoft, Torben Falck

2001-01-01

Previous studies have shown a correlation between expression of the EGF receptor type III mutation (EGFRvIII) and a more malignant phenotype of various cancers including: non-small-cell lung cancer, glioblastoma multiforme, prostate cancer and breast cancer. Thus, a detailed molecular genetic...... understanding of how the EGFRvIII contributes to the malignant phenotype is of major importance for future therapy. The GeneChip Hu6800Set developed by Affymetrix was used to identify changes in gene expression caused by the expression of EGFRvIII. The cell line selected for the study was an EGF receptor...... negative small-cell-lung cancer cell line, GLC3, stably transfected with the EGFRvIII gene in a Tet-On system. By comparison of mRNA levels in EGFRvIII-GLC3 with those of Tet-On-GLC3, it was found that the levels of mRNAs encoding several transcription factors (ATF-3, JunD, and c-Myb), cell adhesion...

FY 1999 Industrial science and technology research and development project. Report on the results of research and development of the technologies for genome informatics (Acceleration of analysis of green mold transcription control information); 1999 nendo genome infomatics gijutsu kenkyu kaihatsu seika hokokusho. Koji kabi no tensha seigyo joho no kaiseki kasokuka nado

Energy Technology Data Exchange (ETDEWEB)

NONE

2001-03-01

A total of 49 budding yeast transcription factor disruptants and one conditional transcription over expression strain are produced, to elucidate the gene regulation networks using the gene expression profile data, and to measure the systematic and high-quality gene expression profiles using the Affymetrix's GeneChip system. The program is also developed for accurately predicting the base sequences which regulate expression of given gene groups, based on the uniqueness of the upstream sequences. The analysis with the aid of the program predicts 8 gene expression regulation sequences, which are considered to be novel, from the gene groups of retarded expression by the transcription factor disruptants. The time course gene expression data are produced from the transcription factor SW14 conditional over expression strain. The analysis of the data indicates that the analysis of the subtracted genes using the gene expression profiles from the wild type strain is useful for clarifying the effects of the derived transcription factor over expression. (NEDO)

Stress-induced accumulation of wheat germ agglutinin and abscisic acid in roots of wheat seedlings

International Nuclear Information System (INIS)

Cammue, B.P.A.; Broekaert, W.F.; Kellens, J.T.C.; Peumans, W.J.; Raikhel, N.V.

1989-01-01

Wheat germ agglutinin (WGA) levels in roots of 2-day-old wheat seedlings increased up to three-fold when stressed by air-drying. Similar results were obtained when seedling roots were incubated either in 0.5 molar mannitol or 180 grams per liter polyethylene glycol 6,000, with a peak level of WGA after 5 hours of stress. Longer periods of osmotic treatment resulted in a gradual decline of WGA in the roots. Since excised wheat roots incorporate more [ 35 S]cysteine into WGA under stress conditions, the observed increase of lectin levels is due to de novo synthesis. Measurement of abscisic acid (ABA) levels in roots of control and stressed seedlings indicated a 10-fold increase upon air-drying. Similarly, a five- and seven-fold increase of ABA content of seedling roots was found after 2 hours of osmotic stress by polyethylene glycol 6,000 and mannitol, respectively. Finally, the stress-induced increase of WGA in wheat roots could be inhibited by growing seedlings in the presence of fluridone, an inhibitor of ABA synthesis. These results indicate that roots of water-stressed wheat seedlings (a) contain more WGA as a result of an increased de novo synthesis of this lectin, and (b) exhibit higher ABA levels. The stress-induced increase of lectin accumulation seems to be under control of ABA

Protein modeling of yellow rust disease in wheat

International Nuclear Information System (INIS)

Aziz, S.E.; Bano, R.; Zayed, M.E.; Elshikh, M.S.; Khan, M.H.; Chaudhry, Z.

2017-01-01

Wheat production in Pakistan is affected by yellow rust disease caused by a fungus Puccinia striiformis. There is a need to broaden the genetic basis of wheat by identifying new resistance genes. The present study was aimed to identify an alternate resistance gene for yellow rust disease in wheat caused by Puccinia striiformis. Genome sequence was compared with databases and similar gene was identified for disease resistance in rye plant. Structural analysis of RGA1 gene (resistance gene in wheat) was carried out using different bioinformatics tools and an alternative gene having same structure was identified on the basis of structural and sequence homology. Rye plant is the proposed plant for the alternate new resistance gene. The result of pairwise alignment of RGA1 gene in wheat and gene of rye plant is 94.2% with accession DQ494535 .The secondary structures of both the genes was compared and found similar to each other. These comparisons between the wheat resistance gene and gene from rye plant depict structural similarities between the two genes. Results of RGA1 gene's structural analysis in wheat is as follow: Helices: 59, Extended sheets: 30, Turns: 12, Coils: 13 and for alternate resistance genes in Rye is as follow: Helices: 52, Extended sheets: 30, Turns: 14, Coils: 17. As structures are similar, the alternate identified gene could be used for resistance in wheat. (author)

Identification of novel QTL for sawfly resistance in wheat

Science.gov (United States)

J. D. Sherman; D. K. Weaver; M. L. Hofland; S. E. Sing; M. Buteler; S. P. Lanning; Y. Naruoka; F. Crutcher; N. K. Blake; J. M. Martin; P. F. Lamb; G. R. Carlson; L. E. Talbert

2010-01-01

The wheat stem sawfly (WSS) (Cephus cinctus Nort.) is an important pest of wheat (Triticum aestivum L. em. Thell.) in the Northern Great Plains. This paper reports the genetic analysis of antixenosis for egg-laying WSS females in recombinant inbred lines (RIL) of hard red spring wheat. Female WSS preferentially choose certain wheat genotypes for egg-laying, with the...

Identification methods for irradiated wheat

International Nuclear Information System (INIS)

Zhu Shengtao; Kume, Tamikazu; Ishigaki, Isao.

1992-02-01

The effect of irradiation on wheat seeds was examined using various kinds of analytical methods for the identification of irradiated seeds. In germination test, the growth of sprouts was markedly inhibited at 500Gy, which was not affected by storage. The decrease in germination percentage was detected at 3300Gy. The results of enzymatic activity change in the germ measured by Vita-Scope germinator showed that the seeds irradiated at 10kGy could be identified. The content of amino acids in ungerminated and germinated seeds were analyzed. Irradiation at 10kGy caused the decrease of lysine content but the change was small which need very careful operation to detect it. The chemiluminescence intensity increased with radiation dose and decreased during storage. The wheat irradiated at 10kGy could be identified even after 3 months storage. In the electron spin resonance (ESR) spectrum analysis, the signal intensity with the g value f 2.0055 of skinned wheat seeds increased with radiation dose. Among these methods, germination test was the most sensitive and effective for identification of irradiated wheat. (author)

Pricing behavior of USA exporter in wheat international market

Science.gov (United States)

Wibowo, R. P.; Sumono; Iddrisu, Y.; Darus, M.; Sihombing, L. P.; Jufri

2018-02-01

The number of wheat producing countries is changing over time. It is expected the change in wheat supply will lead world wheat market become more competitive and reduce market power of major exporter country. This paper tries to identify and examined the degree of market power on wheat international market for USA by using the Pricing to Market (PTM) method. USA is the biggest producer and exporter in wheat market. The PTM method found that USA impose noncompetitive strategy by applying price discrimination and apply market power to their importer country.

Relay cropping of wheat (Triticum aestivum L.) in cotton (Gossypium hirsutum L.) improves the profitability of cotton-wheat cropping system in Punjab, Pakistan.

Science.gov (United States)

Sajjad, Aamer; Anjum, Shakeel Ahmad; Ahmad, Riaz; Waraich, Ejaz Ahmad

2018-01-01

Delayed sowing of wheat (Triticum aestivum L.) in cotton-based system reduces the productivity and profitability of the cotton-wheat cropping system. In this scenario, relay cropping of wheat in standing cotton might be a viable option to ensure the timely wheat sowing with simultaneous improvement in wheat yields and system profitability. This 2-year study (2012-2013 and 2013-2014) aimed to evaluate the influence of sowing dates and relay cropping combined with different management techniques of cotton sticks on the wheat yield, soil physical properties, and the profitability of the cotton-wheat system. The experiment consisted of five treatments viz. (S1) sowing of wheat at the 7th of November by conventional tillage (two disc harrows + one rotavator + two plankings) after the removal of cotton sticks, (S2) sowing of wheat at the 7th of November by conventional tillage (two disc harrows + two plankings) after the incorporation of cotton sticks in the field with a rotavator, (S3) sowing of wheat at the 7th of November as relay crop in standing cotton with broadcast method, (S4) sowing of wheat at the 15th of December by conventional tillage (two disc harrows + one rotavator + two plankings) after the removal of cotton sticks, and (S5) sowing of wheat at the 15th of December by conventional tillage (two disc harrows + two plankings) after the incorporation of cotton sticks in the field with a rotavator. The highest seed cotton yield was observed in the S5 treatment which was statistically similar with the S3 and S4 treatments; seed cotton yield in the S1 and S2 treatments has been the lowest in both years of experimentation. However, the S2 treatment produced substantially higher root length, biological yield, and grain yield of wheat than the other treatments. The lower soil bulk density at 0-10-cm depth was recorded in the S2 treatment which was statistically similar with the S5 treatment during both years of experimentation. The volumetric water contents, net

Genetic evolution and utilization of wheat germplasm resources in Huanghuai winter wheat region of China

International Nuclear Information System (INIS)

Xiyong, C.; Haixia, X.U.; Feng, C.

2011-01-01

To determine the genetic variation of wheat germplasm resources and improve their use in wheat breeding, 215 wheat cultivars and advanced lines from the Huanghuai Wheat Region of China were used to identify 14 agronomic traits and 7 quality traits, as well as the evolution and utilization of high molecular weight glutenin subunits (HMW-GS) and low molecular weight-glutenin subunits (LMW-GS). From land race cultivars to current cultivars there had been significant increases in grain numbers spike/sip -1/, grain weight spike/sup -1/, 1000-kernel weight, grain weight plant/sup -1/, spikelet number spike/sup -1/, sterile spikelet numbers spike/sup -1/, flag leaf width, and flag leaf area. There had been significant decreases in spike number plant/sup -1/, plant height, the first inter node length, flag leaf length, kernel protein content and wet gluten content. Based on Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) results, a novel HMW-GS combination 20/8 was identified in 1B chromosome of Chinese landrace cultivar Heputou. Subunits 22, 20/8, 2.2+12, and GluB3a were only found in cultivars before the 1960s, and subunits 6+8, 13+16, 3+12, and 4+12 were only found in the cultivars after the 1980s. The average diversity index of 21 traits and allele variance of HMW-GS showed a decreasing-increasing-decreasing tendency. HMW-GS and LMW-GS combination-type cultivars showed an increasing-decreasing tendency. Before the 1980s, most parental strains were from foreign cultivars and landrace cultivars, while after the 1980s, most parental strains were from released cultivars and germplasm created by distant hybridization. This study provided useful information for improvement of wheat breeding in Huanghuai winter wheat region. (author)

78 FR 27857 - United States Standards for Wheat

Science.gov (United States)

2013-05-13

... RIN 0580-AB12 United States Standards for Wheat AGENCY: Grain Inspection, Packers and Stockyards... (GIPSA) is revising the United States Standards for Wheat under the United States Grain Standards Act (USGSA) to change the definition of Contrasting classes (CCL) in the class Hard White wheat. This change...

Economics of wheat based cropping systems in rainfed areas of pakistan

International Nuclear Information System (INIS)

Khaliq, P.; Cheema, N.M.; Malik, A.; Umair, M.

2012-01-01

The Pothwar tract of rainfed area has enormous potential to meet incremental food grain needs of the country. However, a significant yield gap in wheat has been reported between yields of substantive and the progressive growers mainly due to poor management of soil, water and fertility issues. A field study was conducted at National Agricultural Research Centre (NARC), Islamabad and the traditional wheat-fallow-wheat (W-F-W) cropping system was evaluated with the improved wheat-maize fodder-wheat (W-MF-W) and wheat-mungbean-wheat (W-MB-W) cropping systems. Two tillage practices, i.e. shallow tillage with cultivator and deep tillage with moldboard; and four fertilizer treatments viz., control (C), recommended dose of fertilizer for each crop (F), farmyard manure (FYM) at the rate -15 tha . The recommended doses of fertilizer for individual crop with FYM (F+FYM) were also included in the study to know their impact on the crops yield in the cropping systems. Economic analysis of the data revealed that the traditional wheat-fallow-wheat cropping system could be economically replaced with wheat-maize fodder-wheat cropping system even under drought condition and there will be no economical loss of wheat yield when planted after maize fodder. Application of recommended dose of fertilizer -1 along with FYM at the rate 5 tha will enhance the yield of wheat and maize fodder. The improved cropping system of wheat-maize fodder-wheat will help the farmers to sustain productivity of these crops, stable economic benefits and improvement in soil nutrients and organic matter over time. (author)

Breeding value of primary synthetic wheat genotypes for grain yield

Science.gov (United States)

To introduce new genetic diversity into the bread wheat gene pool from its progenitor, Aegilops tauschii (Coss.) Schmalh, 33 primary synthetic hexaploid wheat genotypes (SYN) were crossed to 20 spring bread wheat (BW) cultivars at the International Wheat and Maize Improvement Center. Modified single...

Evaluation of irradiated wheat populations. Vol. 4

International Nuclear Information System (INIS)

Salam, T.Z.

1996-01-01

This study was carried out from 1992 to 1994. It aimed to study genetic behaviour for plant height, dry weight/plant, earliness, grain yield/plant, and 100-grain weight at harvest time in three wheat cultivars Mexi back, Giza 155, and Saka 69; and and their hybrids in F 3 - M 1 , and F 4 - M 2 mutagenic generations after treatment of dry seeds with gamma ray doses of 75, 100, and 125 Gy. All doses caused an increase or decrease in growth, yield, and yield attributes of the wheat cultivars. In G 1 55 Mexi back hybrid wheat the 100 Gy caused an increase in 100 - grain weight, grain yield/plant, and dry weight/plant in F 4 - M 2 generation only. But in Mexi back X G 1 55 hybrid wheat the 75 Gy increased plant height, 100 - grain weight, grain yield/plant, and dry weight/plant in both generations F 3 - M 1 and F 4 -M 2 . SK 69 X Mexi back hybrid wheat at 75 Gy caused earliness by about 13 days, and high grain yield in F 4 - M 2 generation only. however, in Mexi back x SK 69 hybrid wheat, 100 Gy caused earliness about 7 days but with low grain yield. 3 tabs

Distribution of protein components of wheat from different regions

African Journals Online (AJOL)

kesiena

2012-06-07

Jun 7, 2012 ... The distribution of wheat protein components in different regions was researched to ..... properties of wheat gliadins II. effects on dynamic rheoligical ... fractions properties of wheat dough depending on molecular size and.

Examination of gene expression in mice exposed to low dose radiation using affymetrix cDNA microarrays

Energy Technology Data Exchange (ETDEWEB)

Morris, D.; Knox, D.; Lavoie, J.; Lemon, J.; Boreham, D. [McMaster Univ., Hamilton, Ontario (Canada)

2005-07-01

'Full text:' Gamma radiation acts via the indirect effect to damage cells by producing reactive oxygen species (ROS). These ROS are capable damaging macromolecules and, altering signal pathways and gene transcription. Cells have evolved enzymes and mechanisms to scavenge ROS and repair oxidative damage. Microarrays allow the survey of the gene transcription activity of thousands of genes simultaneously. Messenger RNA is extracted from cells, hybridized with the complementary DNA (cDNA) of a microarray chip, and examined with a chip reader. Affymetrix microarray chips have been produced by the CSCHAH in Winnipeg containing 26000 murine genes. Groups of female mice have been exposed to low dose whole body chronic gamma radiation exposures of 0,50,100, and 120 mGy, corresponding to 15,30,60, and 75 weeks, respectively. MRNA from mice brain tissue has been extracted, isolated, converted to cDNA and labeled. Gene expression in each irradiated mouse was compared to the pooled expression of the control mice. Analysis of gene expression levels are performed with microarray analytical software, Array Pro by Media Cybernetics, and powerful statistical software, BRB microarray tools. Differences in gene expressions, focusing on genes for cytokines, DNA repair mechanisms, immuno-modulators, apoptosis pathways, and enzymatic anti-oxidant systems, are being examined and will be reported. (author)

77 FR 23420 - United States Standards for Wheat

Science.gov (United States)

2012-04-19

... and Stockyards Administration 7 CFR Part 810 RIN 0580-AB12 United States Standards for Wheat AGENCY..., 2012, regarding a proposal to revise the U.S. Standards for Wheat under the U.S. Grain Standards Act. The proposed rule would change the definition of Contrasting classes in Hard White wheat and change...

7 CFR 782.18 - Wheat purchased for export.

Science.gov (United States)

2010-01-01

... 7 Agriculture 7 2010-01-01 2010-01-01 false Wheat purchased for export. 782.18 Section 782.18... § 782.18 Wheat purchased for export. (a) This section applies to an importer or subsequent buyer who imports or purchases Canadian-produced wheat for the purpose of export to a foreign country or...

Quantitative analysis of phytate globoids isolated from wheat bran and characterization of their sequential dephosphorylation by wheat phytase

DEFF Research Database (Denmark)

Bohn, Lisbeth; Josefsen, Lone; Meyer, Anne S.

2007-01-01

Wheat phytase was purified to investigate the action of the enzyme toward its pure substrate (phytic acid - myo-inositol hexakisphosphate) and its naturally occurring substrate (phytate globoids). Phytate globoids were purified to homogeneity from wheat bran, and their nutritionally relevant...... phytic acid was replaced with phytate globoids as substrate. Time course degradation of phytic acid or phytate globoids using purified wheat phytase was followed by HPIC identification of inositol phosphates appearing and disappearing as products. In both cases, enzymatic degradation initiated at both...

Climate Change and Rainfed Wheat Production in Iran

Directory of Open Access Journals (Sweden)

A Koocheki

2011-01-01

Full Text Available Abstract This research was conducted to evaluate the impacts of climate change on rainfed wheat growth and yield at country level. Weather data generated by a General Circulation model based on the ICCP scenarios for the target years of 2025 and 2050. Daily weather data including minimum and maximum temperatures, precipitation and radiation were used as the inputs of a growth simulation model for rainfed after calibration and validation for predicting wheat yield under current climatic conditions. Using the model, the impacts of climate change on wheat growth and yield was predicted and compared with the current data. The simulation results indicated that leaf area index and absorbed radiation by wheat canopy was reduced under climatic conditions of the target years. Reduction of absorbed radiation resulted to a lower crop growth rate and consequently drastic reduction in dry matter production. Estimated drought stress index for the future climate conditions showed that reduction of crop growth rate was mainly resulted from water shortage due to increased evapotranspiration. Reduction of the length of growth period together with a considerable decline of harvest index resulted in a significant reduction of rainfed wheat yield despite the positive effects of increased CO2 concentration and this negative impacts on wheat yield was intensified from 2025 towards 2050. Simulation results showed that the potential impact of climate change on rainfed wheat yield was more pronounced in Eastern regions of the country compared to the Western production areas. The overall country level reduction of rainfed wheat yield was estimated in the range of 16 to 25 % and 22 to 32% for the years 2025 and 2050, respectively. Keywords: Climate change, Rainfed wheat, General Circulation models, Simulation, Yield, Iran

Microsatellites in wheat and their applications

International Nuclear Information System (INIS)

Stephenson, P.; Bryan, G.J.; Kirby, J.; Gale, M.D.

1998-01-01

The development of large panels of simply analyzable genetic markers for diversity studies and tagging, agronomically important genes in hexaploid bread wheat is an important goal in applied cereal genetic research. We have isolated and sequenced over two-hundred clones containing microsatellites from the wheat genome, and have tested 150 primer pairs for genetic polymorphism using a panel of ten wheat varieties, including the parents of our main mapping cross. A total of 125 loci were detected by 82 primer pairs, of which 105 loci from 63 primer pairs can be unequivocally allocated to one of the wheat chromosomes. A relatively low frequency of the loci detected are from the D-genome (24%). Generally, the microsatellites show high levels of genetic polymorphism and an average 3.5 alleles per locus with an average polymorphism information content (PIC) value of 0.5. The observed levels of polymorphism are positively correlated with the length of the microsatellite repeats. A high proportion, approximately one half, of primer pairs designed to detect simple sequence repeat (SSR) variation in wheat do not generate the expected amplification products and, more significantly, often generate unresolvable Polymerase Chain Reaction (PCR) products. In general our results agree closely with those obtained from other recent studies using microsatellites in plants. (author)

Fourier Transform Infrared Spectroscopic Studies Of Wheat In The Mid Infrared

Science.gov (United States)

Olinger, Jill M.; Griffiths, Peter R.

1989-12-01

Official grain standards of the United States state that wheat may be divided into seven classes which are: Durum, Red Durum, Hard Red Spring, Hard Red Winter, Soft Red Winter, White, and Mixed.1 Most end uses of wheat involve converting the grain into flour through one of a variety of grinding methods. The quality of wheat-based products is often very dependent upon the type or class of wheat which was used to make the flour. Pasta products, for example, are made almost exclusively from the flour of durum wheats, which are the hardest of the wheats listed above. The highest quality breads are produced using flour from wheats classed as hard, whereas cakes, cookies and pastries are considered best when flour from wheats classed as soft are used. It is obvious then that the capability of determining the class of a particular wheat, especially with respect to hardness, is of economic importance to growers, processors, and merchants of wheat and wheat products. Hardness has been measured in many different ways 2-5 but, as of yet, no one method has become the method of choice. This paper reports on the use of principal components analysis (PCA) of mid infrared diffuse reflectance (DR) spectra of diluted ground wheats to aid in the classification of those wheats with respect to their hardness. The theory and mathematics involved in a principal component analysis have been described elsewhere.9

Identification of Leaf Promoters for Use in Transgenic Wheat

Directory of Open Access Journals (Sweden)

Saqer S. Alotaibi

2018-03-01

Full Text Available Wheat yields have plateaued in recent years and given the growing global population there is a pressing need to develop higher yielding varieties to meet future demand. Genetic manipulation of photosynthesis in elite wheat varieties offers the opportunity to significantly increase yields. However, the absence of a well-defined molecular tool-box of promoters to manipulate leaf processes in wheat hinders advancements in this area. Two promoters, one driving the expression of sedoheptulose-1,7-bisphosphatase (SBPase and the other fructose-1,6-bisphosphate aldolase (FBPA from Brachypodium distachyon were identified and cloned into a vector in front of the GUS reporter gene. Both promoters were shown to be functionally active in wheat in both transient assays and in stably transformed wheat plants. Analysis of the stable transformants of wheat (cv. Cadenza showed that both promoters controlled gus expression throughout leaf development as well as in other green tissues. The availability of these promoters provides new tools for the expression of genes in transgenic wheat leaves and also paves the way for multigene manipulation of photosynthesis to improve yields.

Evidence of isolate-specificity in non-hypersensitive resistance in spring wheat (Triticum aestivum) to wheat leaf rust

NARCIS (Netherlands)

Qamar, Maqsood; Niks, R.E.

2007-01-01

Isolate-specific aspect of non-hypersensitive resistance in wheat to wheat leaf rust was studied at seedling stage in the green house. Isolate-specific response of non-hypersensitive resistance was assessed from latency period (LP) and infection frequency (IF) of two single-pustule isolates of

Transferring alien genes to wheat

International Nuclear Information System (INIS)

Knott, D.R.

1987-01-01

In broad terms an alien gene can be considered to be any gene transferred to wheat from a related species. As described above by Maan (section 7D) the genus Triticum contains a broad range of species, some of which cross readily with the cultivated tetraploid (T. Turgidum L.) or hexaploid (T. aestivum L.) wheats, and others only with great difficulty. In addition, wheat will also cross with species in a number of other genera including Agropyron, Elymus, Elytrigia (=Agropyron), Haynaldia, Hordeum, and Secale (Riley and Kimber, 1966; Knobloch, 1968; Feldman and Sears, 1981). In discussing the Triticum and Aegilops spp., the classification by Kimber and Sears, section SA-I, above, will be followed. For the Agropyron and related species the classification described by Dewey (1983) will be used. To avoid confusion, in referring to the literature the designations used by the authors will be given, followed by the new designation. The wild relatives of wheat are adapted to a broad range of environments and carry a large reservoir of useful genes (Zohary et al., 1969; Kerber and Dyck, 1973; Brezhnev, 1977; Feldman and Sears, 1981; Limin and Fowler, 1981; Sharma et aI., 1981; McGuire and Dvorak, 1981). Initially they were considered to be primarily sources of disease resistance, but more recently they have been recognized as potential sources of genes for high protein, cold tolerance, salt tolerance, drought tolerance, lodging resistance, early maturity, and even yield. Extensive screening of the wild relatives of wheat needs to be done before their useful genes can be fully utilized

Transferring alien genes to wheat

Energy Technology Data Exchange (ETDEWEB)

Knott, D. R.

1987-07-01

In broad terms an alien gene can be considered to be any gene transferred to wheat from a related species. As described above by Maan (section 7D) the genus Triticum contains a broad range of species, some of which cross readily with the cultivated tetraploid (T. Turgidum L.) or hexaploid (T. aestivum L.) wheats, and others only with great difficulty. In addition, wheat will also cross with species in a number of other genera including Agropyron, Elymus, Elytrigia (=Agropyron), Haynaldia, Hordeum, and Secale (Riley and Kimber, 1966; Knobloch, 1968; Feldman and Sears, 1981). In discussing the Triticum and Aegilops spp., the classification by Kimber and Sears, section SA-I, above, will be followed. For the Agropyron and related species the classification described by Dewey (1983) will be used. To avoid confusion, in referring to the literature the designations used by the authors will be given, followed by the new designation. The wild relatives of wheat are adapted to a broad range of environments and carry a large reservoir of useful genes (Zohary et al., 1969; Kerber and Dyck, 1973; Brezhnev, 1977; Feldman and Sears, 1981; Limin and Fowler, 1981; Sharma et aI., 1981; McGuire and Dvorak, 1981). Initially they were considered to be primarily sources of disease resistance, but more recently they have been recognized as potential sources of genes for high protein, cold tolerance, salt tolerance, drought tolerance, lodging resistance, early maturity, and even yield. Extensive screening of the wild relatives of wheat needs to be done before their useful genes can be fully utilized.

Rising Temperatures Reduce Global Wheat Production

Science.gov (United States)

Asseng, S.; Ewert, F.; Martre, P.; Rötter, R. P.; Lobell, D. B.; Cammarano, D.; Kimball, B. A.; Ottman, M. J.; Wall, G. W.; White, J. W.;

Evaluation of irradiated wheat populations. Vol. 4

Energy Technology Data Exchange (ETDEWEB)

Salam, T Z [Nuclear Research Center, Atomic Energy Authority, Cairo (Egypt)

1996-03-01

This study was carried out from 1992 to 1994. It aimed to study genetic behaviour for plant height, dry weight/plant, earliness, grain yield/plant, and 100-grain weight at harvest time in three wheat cultivars Mexi back, Giza 155, and Saka 69; and and their hybrids in F{sub 3} - M{sub 1}, and F{sub 4} - M{sub 2} mutagenic generations after treatment of dry seeds with gamma ray doses of 75, 100, and 125 Gy. All doses caused an increase or decrease in growth, yield, and yield attributes of the wheat cultivars. In G{sub 1}55 Mexi back hybrid wheat the 100 Gy caused an increase in 100 - grain weight, grain yield/plant, and dry weight/plant in F{sub 4} - M{sub 2} generation only. But in Mexi back X G{sub 1}55 hybrid wheat the 75 Gy increased plant height, 100 - grain weight, grain yield/plant, and dry weight/plant in both generations F{sub 3} - M{sub 1} and F{sub 4} -M{sub 2}. SK{sub 69} X Mexi back hybrid wheat at 75 Gy caused earliness by about 13 days, and high grain yield in F{sub 4} - M{sub 2} generation only. however, in Mexi back x SK{sub 69} hybrid wheat, 100 Gy caused earliness about 7 days but with low grain yield. 3 tabs.

The nitrate leached below maize root zone is available for deep-rooted wheat in winter wheat-summer maize rotation in the North China Plain

Energy Technology Data Exchange (ETDEWEB)

Zhou Shunli [Key Laboratory of Crop Cultivation and Farming System, Ministry of Agriculture, College of Agronomy and Biotechnology, China Agricultural University, 2 West Yuanmingyuan Road, Beijing 100094 (China)], E-mail: zhoushl@cau.edu.cn; Wu Yongcheng [Key Laboratory of Crop Cultivation and Farming System, Ministry of Agriculture, College of Agronomy and Biotechnology, China Agricultural University, 2 West Yuanmingyuan Road, Beijing 100094 (China); College of Agronomy, Si Chuan Agricultural University, Yaan 625014 (China); Wang Zhimin [Key Laboratory of Crop Cultivation and Farming System, Ministry of Agriculture, College of Agronomy and Biotechnology, China Agricultural University, 2 West Yuanmingyuan Road, Beijing 100094 (China); Lu Laiqing; Wang Runzheng [Wuqiao Experimental Station, China Agricultural University, Hebei 061802 (China)

2008-04-15

In winter wheat (Triticum aestivum L.)-summer maize (Zea mays L.) rotation system in the North China Plain, maize roots do not extend beyond 1.2 m in the vertical soil profile, but wheat roots can reach up to 2.0 m. Increases in soil nitrate content at maize harvest and significant reductions after winter wheat harvest were observed in the 1.4-2.0 m depth under field conditions. The recovery of {sup 15}N isotope (calcium nitrate) from various (1.0, 1.2, 1.4, 1.6, 1.8 and 2.0 m) soil depths showed that deep-rooting winter wheat could use soil nitrate up to the 2.0 m depth. This accounted partially, for the reduced nitrate in the 1.4-2.0 m depth of the soil after harvest of wheat in the rotation system. - Deep-rooted wheat can recycle nitrate leached from maize root zone in winter wheat-summer maize rotation system.

The nitrate leached below maize root zone is available for deep-rooted wheat in winter wheat-summer maize rotation in the North China Plain

International Nuclear Information System (INIS)

Zhou Shunli; Wu Yongcheng; Wang Zhimin; Lu Laiqing; Wang Runzheng

2008-01-01

In winter wheat (Triticum aestivum L.)-summer maize (Zea mays L.) rotation system in the North China Plain, maize roots do not extend beyond 1.2 m in the vertical soil profile, but wheat roots can reach up to 2.0 m. Increases in soil nitrate content at maize harvest and significant reductions after winter wheat harvest were observed in the 1.4-2.0 m depth under field conditions. The recovery of 15 N isotope (calcium nitrate) from various (1.0, 1.2, 1.4, 1.6, 1.8 and 2.0 m) soil depths showed that deep-rooting winter wheat could use soil nitrate up to the 2.0 m depth. This accounted partially, for the reduced nitrate in the 1.4-2.0 m depth of the soil after harvest of wheat in the rotation system. - Deep-rooted wheat can recycle nitrate leached from maize root zone in winter wheat-summer maize rotation system

The mechanism on rhizosphere phosphorus activation of two wheat ...

African Journals Online (AJOL)

The mechanism on rhizosphere phosphorus activation of two wheat genotypes with different phosphorus efficiency. ... genotype would be a potential approach for maintaining wheat yield potential in soils with low P bioavailability. Key words: Wheat, P efficiency, rhizosphere properties, P fractions, phosphates activity.

A haplotype specific to North European wheat (Triticum aestivum L.)

Czech Academy of Sciences Publication Activity Database

Tsombalova, J.; Karafiátová, Miroslava; Vrána, Jan; Kubaláková, Marie; Peusa, H.; Jakobson, I.; Jarve, M.; Valárik, Miroslav; Doležel, Jaroslav; Jarve, K.

2017-01-01

Roč. 64, č. 4 (2017), s. 653-664 ISSN 0925-9864 R&D Projects: GA MŠk(CZ) LO1204; GA ČR(CZ) GA14-07164S Institutional support: RVO:61389030 Keywords : bread wheat * genetic diversity * polyploid wheat * introgression lines * molecular analysis * tetraploid wheat * hexaploid wheat * powdery mildew * spelta l. * map * Common wheat * Triticum aestivum L * Spelt * Triticum spelta L * Chromosome 4A * Zero alleles * Haplotype * Linkage disequilibrium Subject RIV: EB - Genetics ; Molecular Biology OBOR OECD: Plant sciences, botany Impact factor: 1.294, year: 2016

The International Heat Stress Genotype Experiment for Modeling Wheat Response to Heat: Field Experiments and AgMIP-Wheat Multi-Model Simulations

Science.gov (United States)

Martre, Pierre; Reynolds, Matthew P.; Asseng, Senthold; Ewert, Frank; Alderman, Phillip D.; Cammarano, Davide; Maiorano, Andrea; Ruane, Alexander C.; Aggarwal, Pramod K.; Anothai, Jakarat;

Energy productivity and efficiency of wheat farming in Bangladesh

International Nuclear Information System (INIS)

Rahman, Sanzidur; Hasan, M. Kamrul

2014-01-01

Wheat is the second most important cereal crop in Bangladesh and production is highly sensitive to variations in the environment. We estimate productivity and energy efficiency of wheat farming in Bangladesh by applying a stochastic production frontier approach while accounting for the environmental constraints affecting production. Wheat farming is energy efficient with a net energy balance of 20,596 MJ per ha and energy ratio of 2.34. Environmental constraints such as a combination of unsuitable land, weed and pest attack, bad weather, planting delay and infertile soils significantly reduce wheat production and its energy efficiency. Environmental constraints account for a mean energy efficiency of 3 percentage points. Mean technical efficiency is 88% thereby indicating that elimination of inefficiencies can increase wheat energy output by 12%. Farmers' education, access to agricultural information and training in wheat production significantly improves efficiency, whereas events such as a delay in planting and first fertilization significantly reduce it. Policy recommendations include development of varieties that are resistant to environmental constraints and suitable for marginal areas; improvement of wheat farming practices; and investments in education and training of farmers as well as dissemination of information. - Highlights: • Bangladesh wheat farming is energy efficient at 20,596 MJha −1 ; energy ratio 2.34. • Environmental factors significantly influence productivity and energy efficiency. • Environmental factors must be taken into account when estimating wheat productivity. • Government policies must focus on ways of alleviating environmental factors. • Farmers' education, training and information sources increase technical efficiency

Australian wheat production expected to decrease by the late 21st century.

Science.gov (United States)

Wang, Bin; Liu, De L; O'Leary, Garry J; Asseng, Senthold; Macadam, Ian; Lines-Kelly, Rebecca; Yang, Xihua; Clark, Anthony; Crean, Jason; Sides, Timothy; Xing, Hongtao; Mi, Chunrong; Yu, Qiang

2017-12-28

Climate change threatens global wheat production and food security, including the wheat industry in Australia. Many studies have examined the impacts of changes in local climate on wheat yield per hectare, but there has been no assessment of changes in land area available for production due to changing climate. It is also unclear how total wheat production would change under future climate when autonomous adaptation options are adopted. We applied species distribution models to investigate future changes in areas climatically suitable for growing wheat in Australia. A crop model was used to assess wheat yield per hectare in these areas. Our results show that there is an overall tendency for a decrease in the areas suitable for growing wheat and a decline in the yield of the northeast Australian wheat belt. This results in reduced national wheat production although future climate change may benefit South Australia and Victoria. These projected outcomes infer that similar wheat-growing regions of the globe might also experience decreases in wheat production. Some cropping adaptation measures increase wheat yield per hectare and provide significant mitigation of the negative effects of climate change on national wheat production by 2041-2060. However, any positive effects will be insufficient to prevent a likely decline in production under a high CO 2 emission scenario by 2081-2100 due to increasing losses in suitable wheat-growing areas. Therefore, additional adaptation strategies along with investment in wheat production are needed to maintain Australian agricultural production and enhance global food security. This scenario analysis provides a foundation towards understanding changes in Australia's wheat cropping systems, which will assist in developing adaptation strategies to mitigate climate change impacts on global wheat production. © 2017 John Wiley & Sons Ltd.

Biolistics Transformation of Wheat

Science.gov (United States)

Sparks, Caroline A.; Jones, Huw D.

We present a complete, step-by-step guide to the production of transformed wheat plants using a particle bombardment device to deliver plasmid DNA into immature embryos and the regeneration of transgenic plants via somatic embryogenesis. Currently, this is the most commonly used method for transforming wheat and it offers some advantages. However, it will be interesting to see whether this position is challenged as facile methods are developed for delivering DNA by Agrobacterium tumefaciens or by the production of transformants via a germ-line process (see other chapters in this book).

Natural variation in grain composition of wheat and related cereals.

Science.gov (United States)

Shewry, Peter R; Hawkesford, Malcolm J; Piironen, Vieno; Lampi, Ann-Maija; Gebruers, Kurt; Boros, Danuta; Andersson, Annica A M; Åman, Per; Rakszegi, Mariann; Bedo, Zoltan; Ward, Jane L

2013-09-04

The wheat grain comprises three groups of major components, starch, protein, and cell wall polysaccharides (dietary fiber), and a range of minor components that may confer benefits to human health. Detailed analyses of dietary fiber and other bioactive components were carried out under the EU FP6 HEALTHGRAIN program on 150 bread wheat lines grown on a single site, 50 lines of other wheat species and other cereals grown on the same site, and 23-26 bread wheat lines grown in six environments. Principal component analysis allowed the 150 bread wheat lines to be classified on the basis of differences in their contents of bioactive components and wheat species (bread, durum, spelt, emmer, and einkorn wheats) to be clearly separated from related cereals (barley, rye, and oats). Such multivariate analyses could be used to define substantial equivalence when novel (including transgenic) cereals are considered.

Adaptation of a RAS pathway activation signature from FF to FFPE tissues in colorectal cancer

Directory of Open Access Journals (Sweden)

Bernard Omolo

2016-10-01

Full Text Available Abstract Background The KRAS gene is mutated in about 40 % of colorectal cancer (CRC cases, which has been clinically validated as a predictive mutational marker of intrinsic resistance to anti-EGFR inhibitor (EGFRi therapy. Since nearly 60 % of patients with a wild type KRAS fail to respond to EGFRi combination therapies, there is a need to develop more reliable molecular signatures to better predict response. Here we address the challenge of adapting a gene expression signature predictive of RAS pathway activation, created using fresh frozen (FF tissues, for use with more widely available formalin fixed paraffin-embedded (FFPE tissues. Methods In this study, we evaluated the translation of an 18-gene RAS pathway signature score from FF to FFPE in 54 CRC cases, using a head-to-head comparison of five technology platforms. FFPE-based technologies included the Affymetrix GeneChip (Affy, NanoString nCounter™ (NanoS, Illumina whole genome RNASeq (RNA-Acc, Illumina targeted RNASeq (t-RNA, and Illumina stranded Total RNA-rRNA-depletion (rRNA. Results Using Affy_FF as the “gold” standard, initial analysis of the 18-gene RAS scores on all 54 samples shows varying pairwise Spearman correlations, with (1 Affy_FFPE (r = 0.233, p = 0.090; (2 NanoS_FFPE (r = 0.608, p < 0.0001; (3 RNA-Acc_FFPE (r = 0.175, p = 0.21; (4 t-RNA_FFPE (r = −0.237, p = 0.085; (5 and t-RNA (r = −0.012, p = 0.93. These results suggest that only NanoString has successful FF to FFPE translation. The subsequent removal of identified “problematic” samples (n = 15 and genes (n = 2 further improves the correlations of Affy_FF with three of the five technologies: Affy_FFPE (r = 0.672, p < 0.0001; NanoS_FFPE (r = 0.738, p < 0.0001; and RNA-Acc_FFPE (r = 0.483, p = 0.002. Conclusions Of the five technology platforms tested, NanoString technology provides a more faithful translation of the RAS pathway gene

Effects of feeding irradiated wheat to malnourished children

International Nuclear Information System (INIS)

Bhaskaram, C.; Sadasivan, G.

1975-01-01

Fifteen children suffering from severe protein-calorie malnutrition were divided into three groups of five each and received diets containing either unirradiated, freshly irradiated, or stored irradiated wheat. All the children were hospitalized for a period of 6 weeks and leukocyte cultures were done initially and at intervals of 2 weeks. Children receiving freshly irradiated wheat developed polyploid cells and certain abnormal cells in increasing number as the duration of feeding increased and showed a gradual reversal to basal level of nil after withdrawal of irradiated wheat. In marked contrast, none of the children fed unirradiated diet developed any abnormal cells while children fed stored irradiated wheat showed polyploid and abnormal cells in significantly decreased numbers. Though the biological significance of polyploidy is not clear, its association with malignancy makes it imperative that the wholesomeness of irradiated wheat for human consumption be very carefully assessed. (U.S.)

Classification of whole wheat flour using a dimensionless number.

Science.gov (United States)

Sehn, Georgia Ane Raquel; Steel, Caroline Joy

2017-11-01

The rheological standards currently used for classifying refined wheat flour for technological quality of bread are also used for whole wheat flours. The aim of this study was to evaluate the rheological and technological behavior of different whole wheat flours, as well as pre-mixes of refined wheat flour with different replacement levels of wheat bran, to develop a dimensionless number that assigns a numerical scale using results of rheological parameters to solve this problem. Through farinograph and extensograph results, most whole wheat flours evaluated presented parameters recommended for bread making, according to the current classification. However, the specific volume of breads elaborated with these flours was not suitable, that is, the rheological analyses were not able to predict the specific volume of pan bread. The development of the Sehn-Steel dimensionless number allowed establishing a classification of whole wheat flours as "suitable" (Sehn-Steel dimensionless number between 62 and 200) or "unsuitable" for the production of pan bread (Sehn-Steel dimensionless number lower than 62). Moreover, an equation that can predict the specific volume of whole pan bread through this dimensionless number was developed.

Genetic gains in wheat in Turkey: Winter wheat for dryland conditions

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Mesut Keser

2017-12-01

Full Text Available Wheat breeders in Turkey have been developing new varieties since the 1920s, but few studies have evaluated the rates of genetic improvement. This study determined wheat genetic gains by evaluating 22 winter/facultative varieties released for rainfed conditions between 1931 and 2006. The study was conducted at three locations in Turkey during 2008–2012, with a total of 21 test sites. The experimental design was a randomized complete block with four replicates in 2008 and 2009 and three replicates in 2010–2012. Regression analysis was conducted to determine genetic progress over time. Mean yield across all 21 locations was 3.34 t ha−1, but varied from 1.11 t ha−1 to 6.02 t ha−1 and was highly affected by moisture stress. Annual genetic gain was 0.50% compared to Ak-702, or 0.30% compared to the first modern landmark varieties. The genetic gains in drought-affected sites were 0.75% compared to Ak-702 and 0.66% compared to the landmark varieties. Modern varieties had both improved yield potential and tolerance to moisture stress. Rht genes and rye translocations were largely absent in the varieties studied. The number of spikes per unit area decreased by 10% over the study period, but grains spike−1 and 1000-kernel weight increased by 10%. There were no significant increases in harvest index, grain size, or spike fertility, and no significant decrease in quality over time. Future use of Rht genes and rye translocations in breeding programs may increase yield under rainfed conditions. Keywords: Genetic gain, Rainfed wheat production, Winter wheat, Yield

Drying watery wheat grains by far infrared

International Nuclear Information System (INIS)

Suda, K.; Murata, K.; Hara, M.

2004-01-01

Summary A far infrared dryer was experimented to dry wheat grains for high performance and cost reduction. It is more efficient than a circulating dryer reducing drying time by 20% and fuel consumption by 20 - 30%. Whereas it takes more time and more fuel, when the drying rate is set at 1%/h. Moreover, on condition that the average drying rate is lower, it could decrease the rate of green wheat grains up to 3%. But green wheat grains did not disappear at all on the condition

Microwave fixation enhances gluten fibril formation in wheat endosperm

Science.gov (United States)

The wheat storage proteins, primarily glutenin and gliadin, contribute unique functional properties in food products and play a critical role in determining the end-use quality of wheat. In the wheat endosperm these proteins form a proteinaceous matrix deposited among starch granules only to be brou...

Introgression of chromosome segments from multiple alien species in wheat breeding lines with wheat streak mosaic virus resistance

Science.gov (United States)

Pyramiding of alien-derived Wheat streak mosaic virus (WSMV) resistance and resistance enhancing genes in wheat is a costeffective and environmentally safe strategy for disease control. PCR-based markers and cytogenetic analysis with genomic in situ hybridisation were applied to identify alien chrom...

Mechanism of Resistance in two Bread Wheat (Triticum Aestivum L.) Lines to Russian Wheat Aphid (Diuraphis Noxia: Homoptra: Aphididae) in Kenya

International Nuclear Information System (INIS)

Malinga, J.N.

2002-01-01

Russian wheat aphid (Diuraphis noxia) is a recent pest of small cereals that is causing severe yield losses in farmers' fields and farmers have demanded a resistant wheat line. In wheat the pest causes both direct and indirect damage resulting in losses of up to 90%. Control of the aphid is a major constraint in the production of wheat in Kenya requiring the use of more than one systematic insecticide application.This cost is prohibitive.Breeding wheat for resistance to Russian wheat is the cheapest alternative and is the international trend. The use of Russian wheat aphid resistant cultivars may reduce the impact of these pest on cereal production. A study was therefore conducted in Kenya to understand and determine the genetics of inheritance pattern of D. noxia present in two new sources of resistance (RWA 8 and RWA 16). These two new sources would be potential donors of D. noxia resistance in breeding programmes. The two resistant donors with unknown resistance genes for Diuraphis noxia were crossed with susceptible Kenyan commercial wheat cultivar, Heroe. Resistant reaction of F 1 ,BC 1 and F2 indicated that resistance in the two lines differed. Resistant in RWA 8 may be controlled by a single dominant genes while RWA 16 by two incomplete dominant genes. It is unknown wether these genes are identical to any known, designated resistance genes. However, their resistance has been shown to be effective on the RWA population in Kenya. As studies continue on these genes at molecular level, it is recommended that resistant populations are carried on through the breeding programme to possibly identify and release a resistant variety for commercial production

A positive allelopathic effect of corn cockle, agrostemma githago, on wheat, triticum aestivum

DEFF Research Database (Denmark)

Søgaard, B.; Doll, H.

1992-01-01

The effect of com cockle on wheat was studied during germination and on adult plants in a growth chamber. Seedling length of wheat germinated together with corn cockle for 5 days increased 13%. Wheat growing together with corn cockle in pots to maturity had a statistically significant higher wheat...... biomass and grain production than wheat growing alone. However, two other experiments with adult plants harvested before wheat maturity showed no effect of corn cockle on wheat production per pot. Within the pots the presence of corn cockle influenced wheat in all three experiments. Wheat plants growing...... at the same position as a corn cockle plant were 20 to 50% larger than wheat plants standing alone....

Identification and utilization of inter-species conserved (ISC probesets on Affymetrix human GeneChip® platforms for the optimization of the assessment of expression patterns in non human primate (NHP samples

Directory of Open Access Journals (Sweden)

Arnold Alma

2004-10-01

Full Text Available Abstract Background While researchers have utilized versions of the Affymetrix human GeneChip® for the assessment of expression patterns in non human primate (NHP samples, there has been no comprehensive sequence analysis study undertaken to demonstrate that the probe sequences designed to detect human transcripts are reliably hybridizing with their orthologs in NHP. By aligning probe sequences with expressed sequence tags (ESTs in NHP, inter-species conserved (ISC probesets, which have two or more probes complementary to ESTs in NHP, were identified on human GeneChip® platforms. The utility of human GeneChips® for the assessment of NHP expression patterns can be effectively evaluated by analyzing the hybridization behaviour of ISC probesets. Appropriate normalization methods were identified that further improve the reliability of human GeneChips® for interspecies (human vs NHP comparisons. Results ISC probesets in each of the seven Affymetrix GeneChip® platforms (U133Plus2.0, U133A, U133B, U95Av2, U95B, Focus and HuGeneFL were identified for both monkey and chimpanzee. Expression data was generated from peripheral blood mononuclear cells (PBMCs of 12 human and 8 monkey (Indian origin Rhesus macaque samples using the Focus GeneChip®. Analysis of both qualitative detection calls and quantitative signal intensities showed that intra-species reproducibility (human vs. human or monkey vs. monkey was much higher than interspecies reproducibility (human vs. monkey. ISC probesets exhibited higher interspecies reproducibility than the overall expressed probesets. Importantly, appropriate normalization methods could be leveraged to greatly improve interspecies correlations. The correlation coefficients between human (average of 12 samples and monkey (average of 8 Rhesus macaque samples are 0.725, 0.821 and 0.893 for MAS5.0 (Microarray Suite version 5.0, dChip and RMA (Robust Multi-chip Average normalization method, respectively. Conclusion It is

Impact of Graze-­‐Out in Hard Red Winter Wheat Production

OpenAIRE

Neupane, Diwash; Moss, Charles B.

2014-01-01

We investigate the relationship between wheat graze-­‐out and cattle-­‐wheat price ratio and moisture level and examine the impact of graze-­‐out on wheat yield in major wheat-­‐producing states in US. Results indicate that cattle-­‐wheat price ratio and moisture level affect farmers’ graze out decision and graze-­‐out have significant impact on wheat yield.

Postharvest tillage reduces Downy Brome infestations in winter wheat

Science.gov (United States)

In the Pacific Northwest, downy brome continues to infest winter wheat producing regions especially in low-rainfall areas where the winter wheat-summer fallow rotation is the dominate production system. In Washington, a study was conducted for 2 years at each of two locations in the winter wheat -su...

Ridge Regression: A tool to forecast wheat area and production

Directory of Open Access Journals (Sweden)

Nasir Jamal

2007-07-01

Full Text Available This research study is designed to develop forecasting models for acreage and production of wheat crop for Chakwal district of Rawalpindi region keeping in view the assumptions of OLS estimation. The forecasting models are developed on the basis of 15 years data from 1984-85 to 1998-99 then wheat area and production for next five years from 1999-2000 to 2003-04 is forecasted through the models and compared with the actual figures. After evaluating the accuracy of the models, final models are developed on the basis of 20 years data for the period 1984-85 to 2003-04. These linear models can be used to forecast wheat area and production of next five years. The Urea fertilizer, DAP fertilizer and manures plays a significant role to enhance the production of wheat crop. Number of ploughs in the wheat fields is significant factor to increase the production of wheat crop. Good rains in the month of October and November significantly contributes to increase the production of wheat crop and mean maximum temperature in the month of March is a significant factor to reduce the production of wheat crop.

PITHOMYCES CHARTARUM AS A PATHOGEN OF WHEAT

NARCIS (Netherlands)

Tóth, B; Csösz, M; Dijksterhuis, J; Frisvad, J C; Varga, J

2007-01-01

During routine surveys of wheat-growing (Triticum aestivum L.) areas of Hungary, symptomatic leaf samples were collected from different wheat cultivars. Macro- and micromorphological examinations of singlespore isolates showed some of them to belong to Pithomyces chartarum (teleomorph:

The Marketing Performance of Illinois and Kansas Wheat Farmers

OpenAIRE

Dietz, Sarah N.; Aulerich, Nicole M.; Irwin, Scott H.; Good, Darrel L.

2008-01-01

The purpose of this paper is to investigate the marketing performance of wheat farmers in Illinois and Kansas over 1982-2004. The results show that farmer benchmark prices for wheat in Illinois and Kansas fall in the middle-third of the price range about half to three-quarters of the time. Consistent with previous studies, this refutes the contention that Illinois and Kansas wheat farmers routinely market the bulk of their wheat crop in the bottom portion of the price range. Tests of the aver...

Adapting wheat in Europe for climate change.

Science.gov (United States)

Semenov, M A; Stratonovitch, P; Alghabari, F; Gooding, M J

2014-05-01

Increasing cereal yield is needed to meet the projected increased demand for world food supply of about 70% by 2050. Sirius, a process-based model for wheat, was used to estimate yield potential for wheat ideotypes optimized for future climatic projections for ten wheat growing areas of Europe. It was predicted that the detrimental effect of drought stress on yield would be decreased due to enhanced tailoring of phenology to future weather patterns, and due to genetic improvements in the response of photosynthesis and green leaf duration to water shortage. Yield advances could be made through extending maturation and thereby improve resource capture and partitioning. However the model predicted an increase in frequency of heat stress at meiosis and anthesis. Controlled environment experiments quantify the effects of heat and drought at booting and flowering on grain numbers and potential grain size. A current adaptation of wheat to areas of Europe with hotter and drier summers is a quicker maturation which helps to escape from excessive stress, but results in lower yields. To increase yield potential and to respond to climate change, increased tolerance to heat and drought stress should remain priorities for the genetic improvement of wheat.

Wheat yield vulnerability: relation to rainfall and suggestions for adaptation

Directory of Open Access Journals (Sweden)

Khalid Tafoughalti

2018-04-01

Full Text Available Wheat production is of paramount importance in the region of Meknes, which is mainly produced under rainfed conditions. It is the dominant cereal, the greater proportion being the soft type. During the past few decades, rainfall flaws have caused a number of cases of droughts. These flaws have seriously affecting wheat production. The main objective of this study is the assessment of rainfall variability at monthly, seasonal and annual scales and to determine their impact on wheat yields. To reduce this impact we suggested some mechanisms of adaptation. We used monthly rainfall records for three decades and wheat yields records of fifteen years. Rainfall variability is assessed utilizing the precipitation concentration index and the variation coefficient. The association between wheat yields and cumulative rainfall amounts of different scales was calculated based on a regression model to evaluate the impact of rainfall on wheat yields. Data analysis shown moderate seasonal and irregular annual rainfall distribution. Yields fluctuated from 210 to 4500 Kg/ha with 52% of coefficient of variation. The correlation results shows that soft wheat and hard wheat are strongly correlated with the period of January to March than with the whole growing-season. While they are adversely correlated with the mid-spring. This investigation concluded that synchronizing appropriate adaptation with the period of January to March was crucial to achieving success yield of wheat.

Common bunt resistant wheat composite cross populations

DEFF Research Database (Denmark)

Steffan, Philipp Matthias; Borgen, A.; Backes, Gunter Martin

stability. However, a number of challenges must be met before diverse wheat populations can be introduced into commercial wheat production: one of these is the development of breeding technologies based on mass selection which enable breeders and farmers to improve specific traits in populations...... and maintain diversity at the same time. BIOBREED is a project which commenced in Denmark in 2011 to meet these challenges for wheat population breeding. The project focuses on the development of tools and methods for mass selection of traits relevant for organic and low input production, where it is expected...... that the highest benefits of utilizing diverse populations can be achieved. BIOBREED focuses on three main aspects of wheat population breeding for organic and low input production systems: i) common bunt (caused by Tilletia caries) resistance, ii) selection for improved protein content and iii) the influence...

Genetic Diversity, Population Structure and Ancestral Origin of Australian Wheat

Directory of Open Access Journals (Sweden)

Reem Joukhadar

2017-12-01

Full Text Available Since the introduction of wheat into Australia by the First Fleet settlers, germplasm from different geographical origins has been used to adapt wheat to the Australian climate through selection and breeding. In this paper, we used 482 cultivars, representing the breeding history of bread wheat in Australia since 1840, to characterize their diversity and population structure and to define the geographical ancestral background of Australian wheat germplasm. This was achieved by comparing them to a global wheat collection using in-silico chromosome painting based on SNP genotyping. The global collection involved 2,335 wheat accessions which was divided into 23 different geographical subpopulations. However, the whole set was reduced to 1,544 accessions to increase the differentiation and decrease the admixture among different global subpopulations to increase the power of the painting analysis. Our analysis revealed that the structure of Australian wheat germplasm and its geographic ancestors have changed significantly through time, especially after the Green Revolution. Before 1920, breeders used cultivars from around the world, but mainly Europe and Africa, to select potential cultivars that could tolerate Australian growing conditions. Between 1921 and 1970, a dependence on African wheat germplasm became more prevalent. Since 1970, a heavy reliance on International Maize and Wheat Improvement Center (CIMMYT germplasm has persisted. Combining the results from linkage disequilibrium, population structure and in-silico painting revealed that the dependence on CIMMYT materials has varied among different Australian States, has shrunken the germplasm effective population size and produced larger linkage disequilibrium blocks. This study documents the evolutionary history of wheat breeding in Australia and provides an understanding for how the wheat genome has been adapted to local growing conditions. This information provides a guide for industry to

Genetic Diversity, Population Structure and Ancestral Origin of Australian Wheat.

Science.gov (United States)

Joukhadar, Reem; Daetwyler, Hans D; Bansal, Urmil K; Gendall, Anthony R; Hayden, Matthew J

2017-01-01

Since the introduction of wheat into Australia by the First Fleet settlers, germplasm from different geographical origins has been used to adapt wheat to the Australian climate through selection and breeding. In this paper, we used 482 cultivars, representing the breeding history of bread wheat in Australia since 1840, to characterize their diversity and population structure and to define the geographical ancestral background of Australian wheat germplasm. This was achieved by comparing them to a global wheat collection using in-silico chromosome painting based on SNP genotyping. The global collection involved 2,335 wheat accessions which was divided into 23 different geographical subpopulations. However, the whole set was reduced to 1,544 accessions to increase the differentiation and decrease the admixture among different global subpopulations to increase the power of the painting analysis. Our analysis revealed that the structure of Australian wheat germplasm and its geographic ancestors have changed significantly through time, especially after the Green Revolution. Before 1920, breeders used cultivars from around the world, but mainly Europe and Africa, to select potential cultivars that could tolerate Australian growing conditions. Between 1921 and 1970, a dependence on African wheat germplasm became more prevalent. Since 1970, a heavy reliance on International Maize and Wheat Improvement Center (CIMMYT) germplasm has persisted. Combining the results from linkage disequilibrium, population structure and in-silico painting revealed that the dependence on CIMMYT materials has varied among different Australian States, has shrunken the germplasm effective population size and produced larger linkage disequilibrium blocks. This study documents the evolutionary history of wheat breeding in Australia and provides an understanding for how the wheat genome has been adapted to local growing conditions. This information provides a guide for industry to assist with

Biochemical and sensory evaluation of wheat bran supplemented sorghum kisra bread

International Nuclear Information System (INIS)

Mallasy, Limya Osman Husain

1998-05-01

Studies were carried out on the effects of addition of wheat bran to sorghum flour (Dabar cultivar) at two levels extraction rates (72% and 80%). Samples were fermented for 14hr and the PH, titrable acidity, crude fibre, protein, total solid, total soluble solids and reducing sugars of fermented batter were determined at 2 hrs intervals. Results indicated that addition of wheat bran either before or after fermentation increased the PH there was decrease in titrable acidity. Reducing sugar contents decrease as a result of addition of wheat bran. Addition of wheat bran result in increasing protein content (15.7%m 19.0% and 20.7% for control, 80%S/WB and 72% S/WB. respectively at the end of fermentation) and also increase of crude fibre content. Addition of wheat bran to sorghum batter either before or after fermentation was accompanied by increase in viscosity ( from 145.1 cp for control to 203.1 cp and 209.8 cp fpr 80%S/WB and 72%S/WB blends respectively). Starch content was determined using iodine spectrophotometry, the moisture content of kisra bread containing wheat bran was significant higher compared with control and lower in available calories. Kisra bread containing wheat bran was lower in reducing sugars 7.42% for control to 5.2% and 4.2% and 4.5% for kisra containing wheat bran, a higher reduction in total carbohydrate were observed in samples containing wheat bran added after fermentation.Kisra containing wheat bran before fermentation gave significantly lower in vitro protein digestabilities. Addition of wheat bran after fermentation resulted in still lower decrease in IVPD compared to addition before fermentation. Sensory evaluation of kisra containing wheat bran indicated significant preference for kisra containing wheat bran compared to the control kisra

Biochemical and sensory evaluation of wheat bran supplemented sorghum kisra bread

Energy Technology Data Exchange (ETDEWEB)

Mallasy, Limya Osman Husain [Department of Food Science and Technology, Faculty of Agriculture, University of Khartoum, Khartoum (Sudan)

1998-05-01

Studies were carried out on the effects of addition of wheat bran to sorghum flour (Dabar cultivar) at two levels extraction rates (72% and 80%). Samples were fermented for 14hr and the PH, titrable acidity, crude fibre, protein, total solid, total soluble solids and reducing sugars of fermented batter were determined at 2 hrs intervals. Results indicated that addition of wheat bran either before or after fermentation increased the PH there was decrease in titrable acidity. Reducing sugar contents decrease as a result of addition of wheat bran. Addition of wheat bran result in increasing protein content (15.7%m 19.0% and 20.7% for control, 80%S/WB and 72% S/WB. respectively at the end of fermentation) and also increase of crude fibre content. Addition of wheat bran to sorghum batter either before or after fermentation was accompanied by increase in viscosity ( from 145.1 cp for control to 203.1 cp and 209.8 cp fpr 80%S/WB and 72%S/WB blends respectively). Starch content was determined using iodine spectrophotometry, the moisture content of kisra bread containing wheat bran was significant higher compared with control and lower in available calories. Kisra bread containing wheat bran was lower in reducing sugars 7.42% for control to 5.2% and 4.2% and 4.5% for kisra containing wheat bran, a higher reduction in total carbohydrate were observed in samples containing wheat bran added after fermentation.Kisra containing wheat bran before fermentation gave significantly lower in vitro protein digestabilities. Addition of wheat bran after fermentation resulted in still lower decrease in IVPD compared to addition before fermentation. Sensory evaluation of kisra containing wheat bran indicated significant preference for kisra containing wheat bran compared to the control kisra. 132 refs., 14 tabs., 7 figs.

Stem rust seedling resistance genes in Ethiopian wheat cultivars ...

African Journals Online (AJOL)

Thirty durum wheat (19 commercial cultivars and 11 breeding lines) and 30 bread wheat (20 commercial cultivars and 10 breeding lines) were tested for gene postulation. Stem rust infection types produced on wheat cultivars and breeding lines by ten Pgt races was compared with infection types produced on 40 near ...

Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat.

Science.gov (United States)

Rey, Elodie; Abrouk, Michael; Keeble-Gagnère, Gabriel; Karafiátová, Miroslava; Vrána, Jan; Balzergue, Sandrine; Soubigou-Taconnat, Ludivine; Brunaud, Véronique; Martin-Magniette, Marie-Laure; Endo, Takashi R; Bartoš, Jan; Appels, Rudi; Doležel, Jaroslav

2018-03-06

Despite a long history, the production of useful alien introgression lines in wheat remains difficult mainly due to linkage drag and incomplete genetic compensation. In addition, little is known about the molecular mechanisms underlying the impact of foreign chromatin on plant phenotype. Here, a comparison of the transcriptomes of barley, wheat and a wheat-barley 7HL addition line allowed the transcriptional impact both on 7HL genes of a non-native genetic background and on the wheat gene complement as a result of the presence of 7HL to be assessed. Some 42% (389/923) of the 7HL genes assayed were differentially transcribed, which was the case for only 3% (960/35 301) of the wheat gene complement. The absence of any transcript in the addition line of a suite of chromosome 7A genes implied the presence of a 36 Mbp deletion at the distal end of the 7AL arm; this deletion was found to be in common across the full set of Chinese Spring/Betzes barley addition lines. The remaining differentially transcribed wheat genes were distributed across the whole genome. The up-regulated barley genes were mostly located in the proximal part of the 7HL arm, while the down-regulated ones were concentrated in the distal part; as a result, genes encoding basal cellular functions tended to be transcribed, while those encoding specific functions were suppressed. An insight has been gained into gene transcription in an alien introgression line, thereby providing a basis for understanding the interactions between wheat and exotic genes in introgression materials. © 2018 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

Competitive Expression of Endogenous Wheat CENH3 May Lead to Suppression of Alien ZmCENH3 in Transgenic Wheat × Maize Hybrids.

Science.gov (United States)

Chen, Wei; Zhu, Qilin; Wang, Haiyan; Xiao, Jin; Xing, Liping; Chen, Peidu; Jin, Weiwei; Wang, Xiu-E

2015-11-20

Uniparental chromosome elimination in wheat × maize hybrid embryos is widely used in double haploid production of wheat. Several explanations have been proposed for this phenomenon, one of which is that the lack of cross-species CENH3 incorporation may act as a barrier to interspecies hybridization. However, it is unknown if this mechanism applies universally. To study the role of CENH3 in maize chromosome elimination of wheat × maize hybrid embryos, maize ZmCENH3 and wheat αTaCENH3-B driven by the constitutive CaMV35S promoter were transformed into wheat variety Yangmai 158. Five transgenic lines for ZmCENH3 and six transgenic lines for αTaCENH3-B were identified. RT-PCR analysis showed that the transgene could be transcribed at a low level in all ZmCENH3 transgenic lines, whereas transcription of endogenous wheat CENH3 was significantly up-regulated. Interestingly, the expression levels of both wheat CENH3 and ZmCENH3 in the ZmCENH3 transgenic wheat × maize hybrid embryos were higher than those in the non-transformed Yangmai 158 × maize hybrid embryos. This indicates that the alien ZmCENH3 in wheat may induce competitive expression of endogenous wheat CENH3, leading to suppression of ZmCENH3 over-expression. Eliminations of maize chromosomes in hybrid embryos of ZmCENH3 transgenic wheat × maize and Yangmai 158 × maize were compared by observations on micronuclei presence, by marker analysis using maize SSRs (simple sequence repeats), and by FISH (fluorescence in situ hybridization) using 45S rDNA as a probe. The results indicate that maize chromosome elimination events in the two crosses are not significantly different. Fusion protein ZmCENH3-YFP could not be detected in ZmCENH3 transgenic wheat by either Western blotting or immnunostaining, whereas accumulation and loading of the αTaCENH3-B-GFP fusion protein was normal in αTaCENH3-B transgenic lines. As ZmCENH3-YFP did not accumulate after AM114 treatment, we speculate that low levels of Zm

Neutron activation analysis of wheat samples

Energy Technology Data Exchange (ETDEWEB)

Galinha, C. [CERENA-IST, Technical University of Lisbon, Av. Rovisco Pais 1, 1049-001 Lisboa (Portugal); Instituto Tecnoclogico e Nuclear, URSN, E.N. 10, 2686-953 Sacavem (Portugal); Anawar, H.M. [Instituto Tecnoclogico e Nuclear, URSN, E.N. 10, 2686-953 Sacavem (Portugal); Freitas, M.C., E-mail: cfreitas@itn.pt [Instituto Tecnoclogico e Nuclear, URSN, E.N. 10, 2686-953 Sacavem (Portugal); Pacheco, A.M.G. [CERENA-IST, Technical University of Lisbon, Av. Rovisco Pais 1, 1049-001 Lisboa (Portugal); Almeida-Silva, M. [Instituto Tecnoclogico e Nuclear, URSN, E.N. 10, 2686-953 Sacavem (Portugal); Coutinho, J.; Macas, B.; Almeida, A.S. [INRB/INIA-Elvas, National Institute of Biological Resources, Est. Gil Vaz, 7350-228 Elvas (Portugal)

2011-11-15

The deficiency of essential micronutrients and excess of toxic metals in cereals, an important food items for human nutrition, can cause public health risk. Therefore, before their consumption and adoption of soil supplementation, concentrations of essential micronutrients and metals in cereals should be monitored. This study collected soil and two varieties of wheat samples-Triticum aestivum L. (Jordao/bread wheat), and Triticum durum L. (Marialva/durum wheat) from Elvas area, Portugal and analyzed concentrations of As, Cr, Co, Fe, K, Na, Rb and Zn using Instrumental Neutron Activation Analysis (INAA) to focus on the risk of adverse public health issues. The low variability and moderate concentrations of metals in soils indicated a lower significant effect of environmental input on metal concentrations in agricultural soils. The Cr and Fe concentrations in soils that ranged from 93-117 and 26,400-31,300 mg/kg, respectively, were relatively high, but Zn concentration was very low (below detection limit <22 mg/kg) indicating that soils should be supplemented with Zn during cultivation. The concentrations of metals in roots and straw of both varieties of wheat decreased in the order of K>Fe>Na>Zn>Cr>Rb>As>Co. Concentrations of As, Co and Cr in root, straw and spike of both varieties were higher than the permissible limits with exception of a few samples. The concentrations of Zn in root, straw and spike were relatively low (4-30 mg/kg) indicating the deficiency of an essential micronutrient Zn in wheat cultivated in Portugal. The elemental transfer from soil to plant decreases with increasing growth of the plant. The concentrations of various metals in different parts of wheat followed the order: Root>Straw>Spike. A few root, straw and spike samples showed enrichment of metals, but the majority of the samples showed no enrichment. Potassium is enriched in all samples of root, straw and spike for both varieties of wheat. Relatively to the seed used for cultivation

Durable field resistance to wheat yellow mosaic virus in transgenic wheat containing the antisense virus polymerase gene.

Science.gov (United States)

Chen, Ming; Sun, Liying; Wu, Hongya; Chen, Jiong; Ma, Youzhi; Zhang, Xiaoxiang; Du, Lipu; Cheng, Shunhe; Zhang, Boqiao; Ye, Xingguo; Pang, Junlan; Zhang, Xinmei; Li, Liancheng; Andika, Ida B; Chen, Jianping; Xu, Huijun

2014-05-01

Wheat yellow mosaic virus (WYMV) has spread rapidly and causes serious yield losses in the major wheat-growing areas in China. Because it is vectored by the fungus-like organism Polymyxa graminis that survives for long periods in soil, it is difficult to eliminate by conventional crop management or fungicides. There is also only limited resistance in commercial cultivars. In this research, fourteen independent transgenic events were obtained by co-transformation with the antisense NIb8 gene (the NIb replicase of WYMV) and a selectable gene bar. Four original transgenic lines (N12, N13, N14 and N15) and an offspring line (N12-1) showed high and durable resistance to WYMV in the field. Four resistant lines were shown to have segregated and only contain NIb8 (without bar) by PCR and herbicide resistance testing in the later generations. Line N12-1 showed broad-spectrum resistance to WYMV isolates from different sites in China. After growing in the infested soil, WYMV could not be detected by tissue printing and Western blot assays of transgenic wheat. The grain yield of transgenic wheat was about 10% greater than the wild-type susceptible control. Northern blot and small RNA deep sequencing analyses showed that there was no accumulation of small interfering RNAs targeting the NIb8 gene in transgenic wheat plants, suggesting that transgene RNA silencing, a common mechanism of virus-derived disease resistance, is not involved in the process of WYMV resistance. This durable and broad-spectrum resistance to WYMV in transgenic wheat will be useful for alleviating the damage caused by WYMV. © 2013 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd.

Starch and protein analysis of wheat bread enriched with phenolics-rich sprouted wheat flour.

Science.gov (United States)

Świeca, Michał; Dziki, Dariusz; Gawlik-Dziki, Urszula

2017-08-01

Wheat flour in the bread formula was replaced with sprouted wheat flour (SF) characterized by enhanced nutraceutical properties, at 5%, 10%, 15% and 20% levels. The addition of SF slightly increased the total protein content; however, it decreased their digestibility. Some qualitative and quantitative changes in the electrophoretic pattern of proteins were also observed; especially, in the bands corresponding with 27kDa and 15-17kDa proteins. These results were also confirmed by SE-HPLC technique, where a significant increase in the content of proteins and peptides (molecular masses breads with 20% of SF. Bread enriched with sprouted wheat flour had more resistant starch, but less total starch, compared to control bread. The highest in vitro starch digestibility was determined for the control bread. The studied bread with lowered nutritional value but increased nutritional quality can be used for special groups of consumers (obese, diabetic). Copyright © 2017 Elsevier Ltd. All rights reserved.

Development of RAPD based markers for wheat rust resistance ...

African Journals Online (AJOL)

Rust diseases are the major cause of low yield of wheat in Pakistan. Wheat breeders all over the world as well as in Pakistan are deriving rust resistance genes from alien species like Triticum ventricosum and introducing them in common wheat (Triticum aestivum). One such example is the introgression of rust resistance ...

Optimizing nitrogen uptake efficiency by irrigated wheat to reduce environmental pollution

International Nuclear Information System (INIS)

Arslan, A.; Kurdali, F.; Al-Shayeb, R.

2000-01-01

Two wheat cultivars (Sham 3 and Sham 6) were grown after fallow for two seasons and after wheat for another two seasons, with sprinkler irrigation. Four N-fertilizer rates (0, 50, 100, and 150% of the recommended dose) were used. A neutron moisture probe was used to determine the time and amount of irrigation. Nitrogen-15 was used to determine the fate of fertilizer N. Porous ceramic samplers were installed at different depths in micro-plots fertilized with 15 N to monitor its movement in the soil. Dry biomass and grain yield of wheat after fallow were much higher than those of wheat after wheat. The effects of increasing amounts of N fertilizer were significant during the four seasons, but were more pronounced in wheat after wheat. The appropriate timing and amount of irrigation water contributed to high fertilizer-N recovery (between 44 and 75%). Plants recovered N fertilizer applied at tillering more efficiently than when it was applied at germination. Labelled N analysis showed no deep percolation of N fertilizer with water during the same growing season. Water use efficiency of wheat after fallow was almost twice that of wheat after wheat, and N fertilization of wheat after wheat increased the water use efficiency two to three fold. Chlorophyll readings with all treatments were high during the first and second seasons, especially those fertilized with the recommended N rate or more. These results were in agreement with Ceres-Wheat model output, where it did not predict any N stress. Nitrogen deficit was observed by eye, and was indicated by the Ceres-Wheat model and chlorophyll-meter readings on plants fertilized with low rates of N during the last two seasons. Acceptable agreement was observed between model prediction of soil-water content and that determined using isotopic techniques, and between observed and predicted grain yields and biomass, N yields of grain and total N yields. However, predictions of the model for some variables were weak-, indicating a

Effects of crop rotation on weed density, biomass and yield of wheat (Titicum aestivum L.)

OpenAIRE

A. Zareafeizabadi; H.R. Rostamzadeh

2016-01-01

In order to study the weed populations in wheat, under different crop rotations an experiment was carried out at Agricultural Research Station of Jolgeh Rokh, Iran. During growing season this project was done in five years, based on Randomized Complete Bloch Design with three replications, on Crop rotations included: wheat monoculture for the whole period (WWWWW), wheat- wheat- wheat- canola- wheat (WWWCW), wheat- sugar beet- wheat-sugar beet- wheat (WSWSW), wheat- potato- wheat- potato- whea...

Canola versus Wheat Rotation Effects on Subsequent Wheat Yield

Science.gov (United States)

Winter canola (Brassica napus L.) (WC) is considered the most promising, domestically-produced oilseed feedstock for biodiesel production and for diversifying wheat (Triticum aestivum L.)-based cropping systems in the Inland Pacific Northwest, USA (PNW). A law passed in 2006 requires that at least t...

Sources of stem rust resistance in Ethiopian tetraploid wheat ...

African Journals Online (AJOL)

Stem or black rust of wheat caused by the fungus Puccinia graminis f. sp. tritici Ericks and Henn (Pgt) is an important disease on wheat worldwide. Pgt is an obligate biotroph, heteroceous in its life cycle and heterothallic in mating type. Seedlings of 41 emmer (Triticum dicoccum), 56 durum (T. durum) wheat accessions were ...

Sensitivity of European wheat to extreme weather

DEFF Research Database (Denmark)

Mäkinen, H; Kaseva, J; Trnka, M

2018-01-01

The frequency and intensity of extreme weather is increasing concomitant with changes in the global climate change. Although wheat is the most important food crop in Europe, there is currently no comprehensive empirical information available regarding the sensitivity of European wheat to extreme...... weather. In this study, we assessed the sensitivity of European wheat yields to extreme weather related to phenology (sowing, heading) in cultivar trials across Europe (latitudes 37.21° to 61.34° and longitudes −6.02° to 26.24°) during the period 1991–2014. All the observed agro-climatic extremes (≥31 °C...... wheat cultivars that responded positively (+10%) to drought after sowing, or frost during winter (−15 °C and −20 °C). Positive responses to extremes were often shown by cultivars associated with specific regions, such as good performance under high temperatures by southern-origin cultivars. Consequently...

The viscoelastic properties of the protein-rich materials from the fermented hard wheat, soft wheat and barley flours

Science.gov (United States)

The linear and non-linear rheological properties of the suspensions for the hard red spring wheat (HRS) flour, soft wheat (Pastry) flour, barley flour, as well as the remain residues of HRS flour, Pastry flour, and barley flour after fermentation were investigated. The linear and non-linear rheologi...

Fermentation of wheat: effects of backslopping different proportions of pre-fermented wheat on the microbial and chemical composition

NARCIS (Netherlands)

Moran, C.A.; Scholten, R.H.J.; Tricarico, J.M.; Brooks, P.H.; Verstegen, M.W.A.

2006-01-01

The objective of the study was to examine effect of backslop on the chemical and microbiological characteristics of fermented wheat (FW). Coarsely ground wheat was mixed with water (1:3 wt/wt) and inoculated with 6 log cfu ml(-1) each of an overnight culture of Lactobacillus plantarum and

Fate of 15N-urea applied to wheat-soybean succession crop

International Nuclear Information System (INIS)

Boaretto, Antonio Enedi; Trivelin, Paulo Cesar Ocheuze; Muraoka, Takashi; Spolidorio, Eduardo Scarpari; Freitas, Jose Guilherme de; Cantarella, Heitor

2004-01-01

The wheat crop in Sao Paulo State, Brazil, is fertilized with N, P and K. The rate of applied N (0 to 120 kg.ha -1 ) depends on the previous grown crop and the irrigation possibility. The response of wheat to rates and time of N application and the fate of N applied to irrigated wheat were studied during two years. Residual N recovery by soybean grown after the wheat was also studied. The maximum grain productivity was obtained with 92 kg.ha -1 of N. The efficiency of 15 N-urea utilization ranged from 52% to 85%. The main loss of applied 15 N, 5% to 12% occurred as ammonia volatilized from urea applied on soil surface. The N loss by leaching even at the N rate of 135 kg.ha -1 , was less than 1% of applied 15 N, due to the low amount of rainfall during the wheat grown season and a controlled amount of irrigated water, that were sufficient to moisten only the wheat root zone. The residual 15 N after wheat harvest represents around 40% of N applied as urea: 20% in soil, 3% in wheat root system and 16% in the wheat straw. Soybean recovered less than 2% of the 15 N applied to wheat at sowing or at tillering stage. (author)

Determination of rust resistance genes in pakistani bread wheats

International Nuclear Information System (INIS)

Qamar, M.; Ahmad, S.D.; Rabbani, M.A.; Shinwari, Z.K.

2014-01-01

Stripe and leaf rusts are the major constraints to bread wheat production in Pakistan. Molecular markers were used to investigate the presence of leaf rust and stripe rust resistance gene cluster Lr34/Yr18 and stem rust resistance gene Sr2 in 52 Pakistani bread wheat cultivars/lines. PCR amplification of DNA fragments using DNA marker csLV-34 showed that 13 of the studied cultivars/lines, namely 03FJ26, NR 337, NR 339, NR 347, NR 350, Manthar, Margalla 99, Iqbal 2000, Saleem 2000, Wafaq 2001, Marwat 2001, Pirsabak 2004 and Fareed 2006 carry leaf rust and stripe rust resistance genes Lr34/Yr18. Stem rust resistance gene Sr2 was observed in 36 Pakistani spring wheat cultivars/lines using stm560.3tgag marker. The slow rusting gene Sr2 needs to be combined with additional stem rust resistance genes to establish durable resistance against Ug99 in modern wheat cultivars. Low frequency of Lr34/Yr18 was found in Pakistani wheats. This gene cluster needs to be incorporated into Pakistani wheats for durable rust resistance. (author)

ATTEMPT TO APPLY STABILIZED WHEAT GERM FOR BREAD SUPPLEMENTATION

Directory of Open Access Journals (Sweden)

Halina Gambuś

2015-02-01

Full Text Available The increased interest in rational nutrition causes, that from many years is observed a growing consumption of bread, and novel food supplemented with health promoting components. For the bread production in Poland mainly wheat and rye cake flours are used, depleted of a many valuable nutrients such as protein, dietary fibre, minerals and vitamins. Because of their unique chemical composition wheat germs are a particularly valuable resource, both for direct consumption and to enhance the nutritional value of food products. The aim of the study was to prepare wheat bread with a 10% addition of commercial stabilized wheat germs. Based on the obtained results, it was found that wheat germs, due to their unique chemical composition, were a particularly valuable resource to supplement the nutritional value of bread. However, germs had detrimental effect on mechanical properties of dough, and on bread quality. Texture of bread crumb and its chemical composition were analysed. It was shown, that germs subjected to fermentation process could be used in wheat bread production as dietary fibre and mineral compound supplement.

A SNP-Based Molecular Barcode for Characterization of Common Wheat.

Directory of Open Access Journals (Sweden)

LiFeng Gao

Full Text Available Wheat is grown as a staple crop worldwide. It is important to develop an effective genotyping tool for this cereal grain both to identify germplasm diversity and to protect the rights of breeders. Single-nucleotide polymorphism (SNP genotyping provides a means for developing a practical, rapid, inexpensive and high-throughput assay. Here, we investigated SNPs as robust markers of genetic variation for typing wheat cultivars. We identified SNPs from an array of 9000 across a collection of 429 well-known wheat cultivars grown in China, of which 43 SNP markers with high minor allele frequency and variations discriminated the selected wheat varieties and their wild ancestors. This SNP-based barcode will allow for the rapid and precise identification of wheat germplasm resources and newly released varieties and will further assist in the wheat breeding program.

Drought Tolerance in Modern and Wild Wheat

Science.gov (United States)

Budak, Hikmet; Kantar, Melda; Yucebilgili Kurtoglu, Kuaybe

2013-01-01

The genus Triticum includes bread (Triticum aestivum) and durum wheat (Triticum durum) and constitutes a major source for human food consumption. Drought is currently the leading threat on world's food supply, limiting crop yield, and is complicated since drought tolerance is a quantitative trait with a complex phenotype affected by the plant's developmental stage. Drought tolerance is crucial to stabilize and increase food production since domestication has limited the genetic diversity of crops including wild wheat, leading to cultivated species, adapted to artificial environments, and lost tolerance to drought stress. Improvement for drought tolerance can be achieved by the introduction of drought-grelated genes and QTLs to modern wheat cultivars. Therefore, identification of candidate molecules or loci involved in drought tolerance is necessary, which is undertaken by “omics” studies and QTL mapping. In this sense, wild counterparts of modern varieties, specifically wild emmer wheat (T. dicoccoides), which are highly tolerant to drought, hold a great potential. Prior to their introgression to modern wheat cultivars, drought related candidate genes are first characterized at the molecular level, and their function is confirmed via transgenic studies. After integration of the tolerance loci, specific environment targeted field trials are performed coupled with extensive analysis of morphological and physiological characteristics of developed cultivars, to assess their performance under drought conditions and their possible contributions to yield in certain regions. This paper focuses on recent advances on drought related gene/QTL identification, studies on drought related molecular pathways, and current efforts on improvement of wheat cultivars for drought tolerance. PMID:23766697

Drought Tolerance in Modern and Wild Wheat

Directory of Open Access Journals (Sweden)

Hikmet Budak

2013-01-01

Full Text Available The genus Triticum includes bread (Triticum aestivum and durum wheat (Triticum durum and constitutes a major source for human food consumption. Drought is currently the leading threat on world's food supply, limiting crop yield, and is complicated since drought tolerance is a quantitative trait with a complex phenotype affected by the plant's developmental stage. Drought tolerance is crucial to stabilize and increase food production since domestication has limited the genetic diversity of crops including wild wheat, leading to cultivated species, adapted to artificial environments, and lost tolerance to drought stress. Improvement for drought tolerance can be achieved by the introduction of drought-grelated genes and QTLs to modern wheat cultivars. Therefore, identification of candidate molecules or loci involved in drought tolerance is necessary, which is undertaken by “omics” studies and QTL mapping. In this sense, wild counterparts of modern varieties, specifically wild emmer wheat (T. dicoccoides, which are highly tolerant to drought, hold a great potential. Prior to their introgression to modern wheat cultivars, drought related candidate genes are first characterized at the molecular level, and their function is confirmed via transgenic studies. After integration of the tolerance loci, specific environment targeted field trials are performed coupled with extensive analysis of morphological and physiological characteristics of developed cultivars, to assess their performance under drought conditions and their possible contributions to yield in certain regions. This paper focuses on recent advances on drought related gene/QTL identification, studies on drought related molecular pathways, and current efforts on improvement of wheat cultivars for drought tolerance.

Characterization of a new synthetic wheat – Aegilops biuncialis ...

African Journals Online (AJOL)

The aim of the experiments was to identify the synthetic wheat – Aegilops biuncialis germplasm Line 15-3-2 with 42 chromosomes. Morphologically, the spike of line 15-3-2 is intermediate to those of its wheat and Aegilops parents. Line 15-3-2 displays stable fertility and immunity to wheat powdery mildew and stripe rust.

7 CFR 407.17 - Group risk plan for wheat.

Science.gov (United States)

2010-01-01

... 7 Agriculture 6 2010-01-01 2010-01-01 false Group risk plan for wheat. 407.17 Section 407.17..., DEPARTMENT OF AGRICULTURE GROUP RISK PLAN OF INSURANCE REGULATIONS § 407.17 Group risk plan for wheat. The provisions of the Group Risk Plan for Wheat for the 2000 and succeeding crop years are as follows: 1...

Hot spots of wheat yield decline with rising temperatures.

Science.gov (United States)

Asseng, Senthold; Cammarano, Davide; Basso, Bruno; Chung, Uran; Alderman, Phillip D; Sonder, Kai; Reynolds, Matthew; Lobell, David B

2017-06-01

Many of the irrigated spring wheat regions in the world are also regions with high poverty. The impacts of temperature increase on wheat yield in regions of high poverty are uncertain. A grain yield-temperature response function combined with a quantification of model uncertainty was constructed using a multimodel ensemble from two key irrigated spring wheat areas (India and Sudan) and applied to all irrigated spring wheat regions in the world. Southern Indian and southern Pakistani wheat-growing regions with large yield reductions from increasing temperatures coincided with high poverty headcounts, indicating these areas as future food security 'hot spots'. The multimodel simulations produced a linear absolute decline of yields with increasing temperature, with uncertainty varying with reference temperature at a location. As a consequence of the linear absolute yield decline, the relative yield reductions are larger in low-yielding environments (e.g., high reference temperature areas in southern India, southern Pakistan and all Sudan wheat-growing regions) and farmers in these regions will be hit hardest by increasing temperatures. However, as absolute yield declines are about the same in low- and high-yielding regions, the contributed deficit to national production caused by increasing temperatures is higher in high-yielding environments (e.g., northern India) because these environments contribute more to national wheat production. Although Sudan could potentially grow more wheat if irrigation is available, grain yields would be low due to high reference temperatures, with future increases in temperature further limiting production. © 2016 John Wiley & Sons Ltd.

Products deriving from microbial fermentation are linked to insulinaemic response in pigs fed breads prepared from whole-wheat grain and wheat and rye ingredients

DEFF Research Database (Denmark)

Theil, Peter Kappel; Jørgensen, Henry Johs. Høgh; Serena, Anja

2011-01-01

The effects of wheat and rye breads made from whole-wheat grain (WWG), wheat aleurone flour (WAF) or rye aleurone flour (RAF) on net portal absorption of carbohydrate-derived nutrients (glucose, SCFA and lactate) and apparent insulin secretion were studied in a model experiment with catheterised...

Enriching and understanding the wheat B genome by meiotic homoeologous recombination

Science.gov (United States)

Wheat, including common wheat (Triticum aestivum, 2n=6x=42, AABBDD) and durum wheat (T. turgidum ssp. durum, 2n=4x=28, AABB), contains three homoeologous subgenomes (A, B, and D) originated from three diploid ancestors. The wild einkorn wheat T. urartu (2n=2x=14, AA) contributed subgenome A and wild...

Genetic diversity in wheat germplasm collections from Balochistan province of Pakistan

International Nuclear Information System (INIS)

Khan, A.A.; Iqbal, A.; Awan, F.S.; Khan, I.A.

2010-01-01

Productivity of wheat varieties being bred for the last many years is stagnant in Pakistan, apparently because of the narrowed genetic base of their parental lines. As a part of the national wheat germplasm characterization programme, we examined genetic diversity among 75 accessions of wheat using RAPD markers and assessed the relationship and genetic distance between them. The accessions surveyed were comprised of land race populations of Triticum aestivum L., collected from various districts of the Balochistan province of Pakistan, which is considered a reservoir of genetic diversity, particularly for wheat. The genetic similarity revealed by RAPD markers among the wheat accessions was medium to high. The accessions collected from Sibi and Pishin districts had the greatest similarity. The polymorphism revealed in the wheat accessions, appeared to be distributed with the location of collections. The high degree of similarity even among the presumably land race material emphasizes the need for the expansion of germplasm resources and development of wheat varieties with diverse genetic background, which could substantiate the wheat breeding programmes to increase its productivity. (author)

Influence of gypsum and farmyard manure on fertilizer zinc uptake by wheat and its residual effect on succeeding rice and wheat crops in a sodic soil

International Nuclear Information System (INIS)

Sachdev, P.; Deb, D.L.

1990-01-01

Greenhouse experiments were conducted to evaluate the effectiveness of gypsum and FYM on a sodic soil on fertilizer Zn uptake by wheat and residual effect on succeeding crops of rice and wheat. Application of FYM significantly increased the yield of first wheat crop as well as the yield of subsequent rice and wheat crops, but gypsum showed significant effect only on rice. FYM application also resulted in an increase in Zn content of all the three crops. Utilisation of the fertilizer Zn by the first crop of wheat ranged between 0.30 to 0.54 per cent while succeeding crop of rice utilised 1.00 to 1.25 per cent of the applied Zn. Application of gypsum to the first crop did not influence the fertilizer Zn uptake by wheat, rice and wheat, however, it significantly reduced the soil pH and increased the available Zn content in soil. (author). 15 refs., 6 tabs

Aneuploids of wheat and chromosomal localization of genes ...

African Journals Online (AJOL)

Aneuploids of wheat and chromosomal localization of genes. ... African Journal of Biotechnology ... cytogenetic methods for the chromosomal localization of major genes in wheat including Chinese spring (CS) monosomics (Triticum aestivum, ...

Genetics of mycorrhizal symbiosis in winter wheat (Triticum aestivum).

Science.gov (United States)

Lehnert, Heike; Serfling, Albrecht; Enders, Matthias; Friedt, Wolfgang; Ordon, Frank

2017-07-01

Bread wheat (Triticum aestivum) is a major staple food and therefore of prime importance for feeding the Earth's growing population. Mycorrhiza is known to improve plant growth, but although extensive knowledge concerning the interaction between mycorrhizal fungi and plants is available, genotypic differences concerning the ability of wheat to form mycorrhizal symbiosis and quantitative trait loci (QTLs) involved in mycorrhization are largely unknown. Therefore, a diverse set of 94 bread wheat genotypes was evaluated with regard to root colonization by arbuscular mycorrhizal fungi. In order to identify genomic regions involved in mycorrhization, these genotypes were analyzed using the wheat 90k iSelect chip, resulting in 17 823 polymorphic mapped markers, which were used in a genome-wide association study. Significant genotypic differences (P wheat. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Microarray Expression Analyses of Arabidopsis Guard Cells and Isolation of a Recessive Abscisic Acid Hypersensitive Protein Phosphatase 2C MutantW⃞

Science.gov (United States)

Leonhardt, Nathalie; Kwak, June M.; Robert, Nadia; Waner, David; Leonhardt, Guillaume; Schroeder, Julian I.

2004-01-01

Oligomer-based DNA Affymetrix GeneChips representing about one-third of Arabidopsis (Arabidopsis thaliana) genes were used to profile global gene expression in a single cell type, guard cells, identifying 1309 guard cell–expressed genes. Highly pure preparations of guard cells and mesophyll cells were isolated in the presence of transcription inhibitors that prevented induction of stress-inducible genes during cell isolation procedures. Guard cell expression profiles were compared with those of mesophyll cells, resulting in identification of 64 transcripts expressed preferentially in guard cells. Many large gene families and gene duplications are known to exist in the Arabidopsis genome, giving rise to redundancies that greatly hamper conventional genetic and functional genomic analyses. The presented genomic scale analysis identifies redundant expression of specific isoforms belonging to large gene families at the single cell level, which provides a powerful tool for functional genomic characterization of the many signaling pathways that function in guard cells. Reverse transcription–PCR of 29 genes confirmed the reliability of GeneChip results. Statistical analyses of promoter regions of abscisic acid (ABA)–regulated genes reveal an overrepresented ABA responsive motif, which is the known ABA response element. Interestingly, expression profiling reveals ABA modulation of many known guard cell ABA signaling components at the transcript level. We further identified a highly ABA-induced protein phosphatase 2C transcript, AtP2C-HA, in guard cells. A T-DNA disruption mutation in AtP2C-HA confers ABA-hypersensitive regulation of stomatal closing and seed germination. The presented data provide a basis for cell type–specific genomic scale analyses of gene function. PMID:14973164

Super Dwarf Wheat for Growth in Confined Spaces

Science.gov (United States)

Bugbee, Bruce

2011-01-01

USU-Perigee is a dwarf red spring wheat that is a hybrid of a high-yield early tall wheat (USU-Apogee) and a low-yield, extremely short wheat that has poor agronomic characteristics. USU-Perigee was selected for its extremely short height (.0.3 m) and high yield . characteristics that make it suitable for growth in confined spaces in controlled environments. Other desirable characteristics include rapid development and resistance to a leaf-tip necrosis, associated with calcium deficiency, that occurs in other wheat cultivars under rapid-growth conditions (particularly, continuous light). Heads emerge after only 21 days of growth in continuous light at a constant temperature of 25 C. In tests, USU-Perigee was found to outyield other full dwarf (defined as wheat cultivars: The yield advantage at a constant temperature of 23 C was found to be about 30 percent. Originally intended as a candidate food crop to be grown aboard spacecraft on long missions, this cultivar could also be grown in terrestrial growth chambers and could be useful for plant-physiology and -pathology studies.

Optimizing nitrogen-fertilizer application to wheat under irrigation

International Nuclear Information System (INIS)

Boaretto, A.E.; Spolidoirio, E.S.; Trivelin, P.C.O.; Muraoka, T.; Freitas, J.G. de; Cantarella, H.

2000-01-01

The responses of wheat to urea, its time of application and the fate of the applied N under irrigation were studied over 2 years. Also studied was the recovery of residual N by soybean planted in the same plots. Maximum grain productivity was obtained with 90 kg N ha -1 . Urea-N uptake ranged from 52% for application at sowing, to 85% when applied at tillering. The main loss of fertilizer N occurred as ammonia volatilized, which ranged from 5 to 12%. Loss of N by leaching was less than 1%, even with an application of 135 kg N ha -1 , which is higher than the rate locally recommended for irrigated wheat. The small leaching loss was due to little rainfall during the growing season and irrigation sufficient only to moisten the root zone. The residual N after wheat harvest represented around 40% of that applied: 21% in soil (to a depth of 60 cm), 3% in roots and 16% in the wheat straw. Soybean recovered less than 2% of the N applied to the wheat. (author)

Radiocesium in wheat of the Po plain

International Nuclear Information System (INIS)

Dominici, G.; Malvicini, A.

1988-01-01

The Cs-137 measurements of many wheat samples, which was cultivated in Po plain during 1986 and 1987, are reported. A relationship is also shown between the quantity of Cs-137, which is contained in total fall-out, and that in the wheat by direct deposition

Wheat Breeding Technologies for a Shifting Global Climate

Data.gov (United States)

US Agency for International Development — This dataset will contain phenotypic observations of a large number of wheat genotypes evaluated in 2016-2017 and 2017-2018 at the International Maize and Wheat...

Enhanced Temperature During Grain Filling Reduces Protein Concentration of Durum Wheat

Directory of Open Access Journals (Sweden)

Franco Miglietta

2011-02-01

Full Text Available Durum wheat is cultivated over more than 13 millions of hectares (ha world wide and Italy is the main European producer with 3.5 millions tons per year. The protein concentration of durum wheat is very important, it ensures high nutritional value and is highly appreciated by the pasta production industries. The protein concentration of wheat is determined during the grain filling period when carbon and nitrogen compounds are translocated into the grains. Air temperature affects translocation rates and contributes to final protein concentration of wheat grains. Two common commercial varieties of durum and bread wheat were exposed from anthesis to harvest, to a source of infrared radiation in the field. This allowed to investigate the relative effect of temperature on translocation of carbon and nitrogen compound during grain filling. The heat treatment imposed affected marginally dry mass accumulation of the grains in bread wheat and didn’t affect dry mass in durum wheat. Grain protein was affected by heat treatment in durum but not in bread wheat. Carbon accumulation rate was higher for durum than for bread wheat. The protein concentration was greater in durum than in bread wheat and we can assume that the absolute nitrogen accumulation rates were higher for the former species. Such difference may be either caused by a faster nitrogen uptake rate and translocation or a more efficient relocation of nitrogen accumulated in reserve organs.

Aphid-parasitoid community structure on genetically modified wheat.

Science.gov (United States)

von Burg, Simone; van Veen, Frank J F; Álvarez-Alfageme, Fernando; Romeis, Jörg

2011-06-23

Since the introduction of genetically modified (GM) plants, one of the main concerns has been their potential effect on non-target insects. Many studies have looked at GM plant effects on single non-target herbivore species or on simple herbivore-natural enemy food chains. Agro-ecosystems, however, are characterized by numerous insect species which are involved in complex interactions, forming food webs. In this study, we looked at transgenic disease-resistant wheat (Triticum aestivum) and its effect on aphid-parasitoid food webs. We hypothesized that the GM of the wheat lines directly or indirectly affect aphids and that these effects cascade up to change the structure of the associated food webs. Over 2 years, we studied different experimental wheat lines under semi-field conditions. We constructed quantitative food webs to compare their properties on GM lines with the properties on corresponding non-transgenic controls. We found significant effects of the different wheat lines on insect community structure up to the fourth trophic level. However, the observed effects were inconsistent between study years and the variation between wheat varieties was as big as between GM plants and their controls. This suggests that the impact of our powdery mildew-resistant GM wheat plants on food web structure may be negligible and potential ecological effects on non-target insects limited.

[The high-molecular glutenins of the soft winter wheats from European countries and their relationship to the glutenin composition of the ancient and modern wheat varieties of Ukraine].

Science.gov (United States)

Rabinovich, S V; Fedak, G; Lukov, O

2000-01-01

The sources of high-quality components of HMW glutenines determining grain quality, as initial material for breeding in the conditions of Ukraine were revealed on the base of analysis of 75 literature sources data about composition of high-molecular weight (HMW) glutenin and pedigrees of 598 European wheats from 12 countries, bred in 1923-1997, including, 449 cultivars from West and 149 East Europe. Origin of these components was observed in varieties of Great Britain, France and Germany from ancient Ukrainian wheat Red Fife and it derivative spring wheats of Canada--Marquis, Garnet, Regent, Saunders, Selkirk and of USA--spring wheat Thatcher and winter wheats--Kanred and Oro--as directly as via cultivars of European countries and Australia; in wheats of East European countries from winter wheats Myronivs'ka 808 and Bezostaya 1 (derivative of Ukrainian cultivars Ukrainka and Krymka) and their descendants; in wheats of Austria and Italy--from the both genetical sources.

Impact of transgenic wheat with wheat yellow mosaic virus resistance on microbial community diversity and enzyme activity in rhizosphere soil.

Science.gov (United States)

Wu, Jirong; Yu, Mingzheng; Xu, Jianhong; Du, Juan; Ji, Fang; Dong, Fei; Li, Xinhai; Shi, Jianrong

2014-01-01

The transgenic wheat line N12-1 containing the WYMV-Nib8 gene was obtained previously through particle bombardment, and it can effectively control the wheat yellow mosaic virus (WYMV) disease transmitted by Polymyxa graminis at turngreen stage. Due to insertion of an exogenous gene, the transcriptome of wheat may be altered and affect root exudates. Thus, it is important to investigate the potential environmental risk of transgenic wheat before commercial release because of potential undesirable ecological side effects. Our 2-year study at two different experimental locations was performed to analyze the impact of transgenic wheat N12-1 on bacterial and fungal community diversity in rhizosphere soil using polymerase chain reaction-denaturing gel gradient electrophoresis (PCR-DGGE) at four growth stages (seeding stage, turngreen stage, grain-filling stage, and maturing stage). We also explored the activities of urease, sucrase and dehydrogenase in rhizosphere soil. The results showed that there was little difference in bacterial and fungal community diversity in rhizosphere soil between N12-1 and its recipient Y158 by comparing Shannon's, Simpson's diversity index and evenness (except at one or two growth stages). Regarding enzyme activity, only one significant difference was found during the maturing stage at Xinxiang in 2011 for dehydrogenase. Significant growth stage variation was observed during 2 years at two experimental locations for both soil microbial community diversity and enzyme activity. Analysis of bands from the gel for fungal community diversity showed that the majority of fungi were uncultured. The results of this study suggested that virus-resistant transgenic wheat had no adverse impact on microbial community diversity and enzyme activity in rhizosphere soil during 2 continuous years at two different experimental locations. This study provides a theoretical basis for environmental impact monitoring of transgenic wheat when the introduced gene is

Impact of transgenic wheat with wheat yellow mosaic virus resistance on microbial community diversity and enzyme activity in rhizosphere soil.

Directory of Open Access Journals (Sweden)

Jirong Wu

Full Text Available The transgenic wheat line N12-1 containing the WYMV-Nib8 gene was obtained previously through particle bombardment, and it can effectively control the wheat yellow mosaic virus (WYMV disease transmitted by Polymyxa graminis at turngreen stage. Due to insertion of an exogenous gene, the transcriptome of wheat may be altered and affect root exudates. Thus, it is important to investigate the potential environmental risk of transgenic wheat before commercial release because of potential undesirable ecological side effects. Our 2-year study at two different experimental locations was performed to analyze the impact of transgenic wheat N12-1 on bacterial and fungal community diversity in rhizosphere soil using polymerase chain reaction-denaturing gel gradient electrophoresis (PCR-DGGE at four growth stages (seeding stage, turngreen stage, grain-filling stage, and maturing stage. We also explored the activities of urease, sucrase and dehydrogenase in rhizosphere soil. The results showed that there was little difference in bacterial and fungal community diversity in rhizosphere soil between N12-1 and its recipient Y158 by comparing Shannon's, Simpson's diversity index and evenness (except at one or two growth stages. Regarding enzyme activity, only one significant difference was found during the maturing stage at Xinxiang in 2011 for dehydrogenase. Significant growth stage variation was observed during 2 years at two experimental locations for both soil microbial community diversity and enzyme activity. Analysis of bands from the gel for fungal community diversity showed that the majority of fungi were uncultured. The results of this study suggested that virus-resistant transgenic wheat had no adverse impact on microbial community diversity and enzyme activity in rhizosphere soil during 2 continuous years at two different experimental locations. This study provides a theoretical basis for environmental impact monitoring of transgenic wheat when the

Integrated weed management in wheat

International Nuclear Information System (INIS)

Marwat, K.B.; Khan, M.A.; Nawab, K.; Khattak, A.M.

2011-01-01

The paper summarizes the results of an experiment conducted on wheat at Kohat, Khyber Pakhtunkhwa, Pakistan during winter 2004-05. Randomized complete block design with split-split-plot arrangement was used where wheat line and broadcast sowing were kept in main plots. Seed rates (100 and 150 kg ha-1) were assigned as sub-plots, while four herbicides (Topik, Isoproturon, Puma super and Buctril super) and weed check were assigned to sub-sub-plots. Results revealed that higher biological yield was recorded in line sowing. However, higher wheat seed rate decreased weed biomass and increased biological yield. Herbicides proved to be effective in decreasing weed biomass and enhancing grain yield and its contributing traits. It was suggested that line sowing in combination with higher seeding rate and Buctril super should be used in an integrated weed management fashion. However further studies are required to investigate various ranges of seeding rate and herbicides doses. (author)

Evaluation of the quality attributes of wheat composite (wheat ...

African Journals Online (AJOL)

Composite flour was produced with wheat and other crops like rice, plantain and cassava at 20% substitution. The flour mixes were evaluated for proximate, physico-chemical properties and sensory evaluation was carried out on bread samples produced from these mixes. The moisture contents of these flours ranged from ...

A High Resolution Radiation Hybrid Map of Wheat Chromosome 4A

Czech Academy of Sciences Publication Activity Database

Balcárková, Barbora; Frenkel, Z.; Škopová, Monika; Abrouk, Michael; Kumar, A.; Chao, S.; Kianian, S. F.; Akhunov, E.; Korol, A.; Doležel, Jaroslav; Valárik, Miroslav

2017-01-01

Roč. 7, JAN 10 (2017), č. článku 2063. ISSN 1664-462X R&D Projects: GA MŠk(CZ) LO1204; GA ČR(CZ) GA14-07164S Institutional support: RVO:61389030 Keywords : triticum-aestivum l. * bread wheat * high-density * agronomic traits * tetraploid wheat * hexaploid wheat * polyploid wheat * genetic maps * genomes * recombination * endosperm radiation hybrid panel * radiation hybrid map * wheat chromosome 4A * chromosome deletion bin map * Triticum aestivum * SNP iSelect array Subject RIV: EB - Genetics ; Molecular Biology OBOR OECD: Plant sciences, botany Impact factor: 4.298, year: 2016

Mineral Composition of Organically Grown Wheat Genotypes: Contribution to Daily Minerals Intake

Science.gov (United States)

Hussain, Abrar; Larsson, Hans; Kuktaite, Ramune; Johansson, Eva

2010-01-01

In this study, 321 winter and spring wheat genotypes were analysed for twelve nutritionally important minerals (B, Cu, Fe, Se, Mg, Zn, Ca, Mn, Mo, P, S and K). Some of the genotypes used were from multiple locations and years, resulting in a total number of 493 samples. Investigated genotypes were divided into six genotype groups i.e., selections, old landraces, primitive wheat, spelt, old cultivars and cultivars. For some of the investigated minerals higher concentrations were observed in selections, primitive wheat, and old cultivars as compared to more modern wheat material, e.g., cultivars and spelt wheat. Location was found to have a significant effect on mineral concentration for all genotype groups, although for primitive wheat, genotype had a higher impact than location. Spring wheat was observed to have significantly higher values for B, Cu, Fe, Zn, Ca, S and K as compared to winter wheat. Higher levels of several minerals were observed in the present study, as compared to previous studies carried out in inorganic systems, indicating that organic conditions with suitable genotypes may enhance mineral concentration in wheat grain. This study also showed that a very high mineral concentration, close to daily requirements, can be produced by growing specific primitive wheat genotypes in an organic farming system. Thus, by selecting genotypes for further breeding, nutritional value of the wheat flour for human consumption can be improved. PMID:20948934

TECHNOLOGICAL CHARACTERIZATION AND CLASSIFICATION OF WHEAT LINEAGES CULTIVATED IN THE CERRADO MINEIRO

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Raul Antônio Viana Madeira

2015-06-01

Full Text Available Farmers need highly productive wheat cultivars in order to reach better profitability. However, this alone is not enough, because, in order to serve the mills, the food industry, and more specifically, the bakers, wheat cultivars must present minimum quality requirements that result in final products of superior quality. This study was conducted with the goals of performing the technological characterization of wheat flour five lineages developed for cultivation in the Cerrado Mineiro; compare the flours of these lineages with the wheat flour of two commercial wheat cultivars, and classify the wheat lineages according to current Brazilian legislation. A completely randomized design was conducted with seven treatments and three replicates. Moisture, protein and ashes content, and the rheological characteristics of the flours were determined. The EP066066 lineage as rated was basic wheat. The EP066055, EP064021, EP062043 and EP063065 were rated as bread wheat. Among the studied lineages, the wheat flour from the EP062043 stood from the others, presenting considerable gluten contents, good level of mixing tolerance, good stability and good gluten strength.

Changes in the phenolic composition of pancake fractions made from refined and whole-wheat flour of two wheat varieties

Science.gov (United States)

In this study, we investigated the changes in the levels of phenolic acids during pancake preparation from refined and whole-wheat flours of two wheat varieties. Comparison of the efficacy of two commonly used methods for hydrolysis and extraction of phenolic acids, namely ultrasonic-assisted extrac...

Wheat related allergy – A retrospective single-centre study of 156 patient

DEFF Research Database (Denmark)

Junker Christensen, Morten

2014-01-01

Background Allergy to wheat can manifest in different forms: sensitization to ingested wheat via the gastrointestinal tract can cause traditional food allergy or in combination with exercise, Wheat-Dependent Exercise-Induced Anaphylaxis (WDEIA). Sensitization to inhaled wheat flour may lead to oc...

QUALITY PREMIUMS FOR AUSTRALIAN WHEAT IN THE GROWING ASIAN MARKETS

OpenAIRE

Ahmadi-Esfahani, Fredoun Z.; Stanmore, Roland G.

1994-01-01

An hedonic price function is applied to Australia's wheat exports to the growing Asian markets. The values for the quality characteristics in the wheat markets of Indonesia, Malaysia, Singapore, South Korea, and Thailand are estimated. The data base for the study is from the Australian Wheat Board shipments over the period 1984 to 1991. The sample is divided into two separate time periods to test the consistency in demand for export wheat and to trace recent trends in quality premiums. The im...

Sensory Profiles and Volatile Compounds of Wheat Species, Landraces and Modern Varieties

DEFF Research Database (Denmark)

Starr, Gerrard

as cooked wheat grain, flour porridge and for eight of these varieties, baked bread. Descriptors for odours of cocoa, oat porridge and øllebrød1) and flavours of sweet, bitter, oat porridge and øllebrød1) were common to all three wheat products. Wheat porridge shared 6 odour and 10 flavour descriptors...... be connected. This Ph. D. project aims to study sensory attributes and volatile compounds of wheat and its products in order to investigate variations between wheat species, landraces and modern varieties and to reveal their impact on bread odours and flavours. Furthermore to examine whether bread could......) were used to analyse sensory and GC-MS data. Differences in odours and flavours were found in all wheat products. Variation also occurred between volatile peak-areas of wheat grain- and bread samples. Twenty four selected wheat species, landraces and varieties were evaluated by trained sensory panels...

Neutron activation analysis of wheat samples

International Nuclear Information System (INIS)

Galinha, C.; Anawar, H.M.; Freitas, M.C.; Pacheco, A.M.G.; Almeida-Silva, M.; Coutinho, J.; Macas, B.; Almeida, A.S.

2011-01-01

The deficiency of essential micronutrients and excess of toxic metals in cereals, an important food items for human nutrition, can cause public health risk. Therefore, before their consumption and adoption of soil supplementation, concentrations of essential micronutrients and metals in cereals should be monitored. This study collected soil and two varieties of wheat samples-Triticum aestivum L. (Jordao/bread wheat), and Triticum durum L. (Marialva/durum wheat) from Elvas area, Portugal and analyzed concentrations of As, Cr, Co, Fe, K, Na, Rb and Zn using Instrumental Neutron Activation Analysis (INAA) to focus on the risk of adverse public health issues. The low variability and moderate concentrations of metals in soils indicated a lower significant effect of environmental input on metal concentrations in agricultural soils. The Cr and Fe concentrations in soils that ranged from 93-117 and 26,400-31,300 mg/kg, respectively, were relatively high, but Zn concentration was very low (below detection limit Fe>Na>Zn>Cr>Rb>As>Co. Concentrations of As, Co and Cr in root, straw and spike of both varieties were higher than the permissible limits with exception of a few samples. The concentrations of Zn in root, straw and spike were relatively low (4-30 mg/kg) indicating the deficiency of an essential micronutrient Zn in wheat cultivated in Portugal. The elemental transfer from soil to plant decreases with increasing growth of the plant. The concentrations of various metals in different parts of wheat followed the order: Root>Straw>Spike. A few root, straw and spike samples showed enrichment of metals, but the majority of the samples showed no enrichment. Potassium is enriched in all samples of root, straw and spike for both varieties of wheat. Relatively to the seed used for cultivation, Jordao presented higher transfer coefficients than Marialva, in particular for Co, Fe, and Na. The Jordao and Marialva cultivars accumulated not statistically significant different

Statistical analysis of the influence of wheat black point kernels on selected indicators of wheat flour quality

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Petrov Verica D.

2011-01-01

Full Text Available The influence of wheat black point kernels on selected indicators of wheat flour quality - farinograph and extensograph indicators, amylolytic activity, wet gluten and flour ash content, were examined in this study. The examinations were conducted on samples of wheat harvested in the years 2007 and 2008 from the area of Central Banat in four treatments-control (without black point flour and with 2, 4 and 10% of black point flour which was added as a replacement for a part of the control sample. Statistically significant differences between treatments were observed on the dough stability, falling number and extensibility. The samples with 10% of black point flour had the lowest dough stability and the highest amylolytic activity and extensibility. There was a trend of the increasing 15 min drop and water absorption with the increased share of black point flour. Extensograph area, resistance and ratio resistance to extensibility decreased with the addition of black point flour, but not properly. Mahalanobis distance indicates that the addition of 10% black point flour had the greatest influence on the observed quality indicators, thus proving that black point contributes to the technological quality of wheat, i.e .flour.

Optimizing silicon application to improve salinity tolerance in wheat

Directory of Open Access Journals (Sweden)

A. Ali

2009-05-01

Full Text Available Salinity often suppresses the wheat performance. As wheat is designated as silicon (Si accumulator, hence Si application may alleviate the salinity induced damages. With the objective to combat the salinity stress in wheat by Si application (0, 50, 100, 150 and 200 mg L-1 using calcium silicate, an experiment was conducted on two contrasting wheat genotypes (salt sensitive; Auqab-2000 and salt tolerant; SARC-5 in salinized (10 dS m-1 and non-salinized (2 dS m-1 solutions. Plants were harvested 32 days after transplanting and evaluation was done on the basis of different morphological and analytical characters. Silicon supplementation into the solution culture improved wheat growth and K+/Na+ with reduced Na+ and enhanced K+ uptake. Concomitant improvement in shoot growth was observed; nonetheless the root growth remained unaffected by Si application. Better results were obtained with 150 and 200 mg L-1 of Si which were found almost equally effective. It was concluded that SARC-5 is better than Auqab-2000 against salt stress and Si inclusion into the solution medium is beneficial for wheat and can improve the crop growth both under optimal and salt stressful conditions.

Effects on respiratory system due to exposure to wheat flour

Directory of Open Access Journals (Sweden)

Adel Mohammed Said

2017-07-01

Conclusions: Exposure to wheat flour increases the risk of developing respiratory symptoms; it also causes reduction in the pulmonary function parameters, as regards spirometry and DLCOSB. Exposure to wheat flour causes interstitial lung disease as detected by HRCT chest. Smoking augments the wheat flour induced lung disease.

RE-evolution of durum wheat by restoring the hardness locus

Science.gov (United States)

Durum wheat is an important crop worldwide. In many areas, durum wheat appears to have competitive yield and biotic and abiotic advantages over bread wheat. What limits durum production? In one respect, the comparatively more limited processing and food functionality. Two traits directly relate to t...

Evaluation of nitrogen uptake patterns in spring and winter wheat in western Oregon

International Nuclear Information System (INIS)

Baloch, D.M.; Malghani, M.A.K.; Khan, M.A.; Kakar, E.

2010-01-01

An understanding of the ground nitrogen (N) uptake pattern for wheat (Triticum aestivum L.) is essential to facilitate nitrogen management. The purpose of this study was to determine the nitrogen uptake pattern of spring and winter wheat grown in western Oregon, USA. Data used in this study were obtained from three different trials. For spring wheat rotation trials five spring wheat cultivars were used. Fertilizer N (16-16-16-4) at the rate of 140 kg ha/sup -1/ was applied at the time of planting. In small plot rotation trials five fertilizer treatments - 0, 50, 100,150 and 200 kg N ha/sup -1/ were used. Rotations include winter wheat following clover and winter wheat following oat. The N uptake and dry matter yield of winter wheat were also determined from unfertilized plots of wheat trial. The maximum N uptake for spring wheat and winter wheat were at 1100 and 2000 accumulated growing degree days (GDD), before Feekes 10, respectively. The maximum N uptake rate for spring wheat, 0.038 kg N GDD/sup -1/, occurred at 750 GDD and the peak N uptake was observed approximately 35 days after Feekes 2. Nitrogen uptake in winter wheat was significantly affected by rotations. (author)

Tocotrienols and tocopherols in colored-grain wheat, tritordeum and barley.

Science.gov (United States)

Lachman, Jaromír; Hejtmánková, Alena; Orsák, Matyáš; Popov, Marek; Martinek, Petr

2018-02-01

Colored-grain spring and winter wheat, spring tritordeum and barley (blue aleurone, purple pericarp, and yellow endosperm) from the harvests 2014 and 2015 were evaluated for tocol contents by HPLC-FD. Higher content of total tocols was found in spring wheat varieties compared with winter varieties. Four tocols (β-tocotrienol, α-tocotrienol, β-tocopherol, and α-tocopherol) were identified in wheat and tritordeum varieties. Dominant tocols in purple- and blue-grained wheat and yellow-grained tritordeum were α-tocopherol and β-tocotrienol, whereas spring barley varieties differed from wheat and tritordeum by high α-tocotrienol content. Tocol content was significantly affected by genotype and in a lesser extent in some varieties and lines also by rainfall and temperatures during crop year. Higher rainfall and lower temperatures caused in most varieties higher tocol contents. Purple- and blue-grained wheat lines with higher tocol, anthocyanin and phenolic acids with health benefits may be useful for breeding new varieties. Copyright © 2017 Elsevier Ltd. All rights reserved.

Combined Effects of Boron and NaCl on Wheat Seedlings

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ZHEN Mei-nan

2015-08-01

Full Text Available To investigate the combined effects of boron(Band NaCl on the growth of wheat, a pot experiment was conducted using wheat (Triticum aestivum Linn.seedlings. Boron concentrations of culture medium were set as 0, 50 mg·kg-1 and 100 mg·kg-1, and NaCl concentrations were 0, 1 g·kg-1 and 2 g·kg-1. The results showed that both boron and NaCl could significantly inhibit wheat growth. At 50 mg B·kg-1, NaCl aggravated growth inhibition caused by boron. At 100 mg B·kg-1, however, NaCl alleviated the inhibition caused by boron. The combined stress of boron and NaCl significantly increased the root to shoot ratio of wheat. NaCl inhibited the uptake of boron by wheat. It suggests that under severe boron stress, NaCl is able to alleviate boron toxicity in wheat by increasing root to shoot ratio and reducing boron uptake.

Impact of Solid and Hollow Varieties of Winter and Spring Wheat on Severity of Wheat Stem Sawfly (Hymenoptera: Cephidae) Infestations and Yield and Quality of Grain.

Science.gov (United States)

Szczepaniec, Adrianna; Glover, Karl D; Berzonsky, William

2015-10-01

Wheat stem sawfly (WSS), Cephus cinctus Norton (Hymenoptera: Cephidae), has recently emerged as a key pest of wheat (Triticum aestivum L.) in the Great Plains and Canadian provinces. The expanding impact of WSS has caused considerable economic losses to wheat production. Solid-stem varieties of wheat remain the only effective measure of suppression of WSS, and the goal of this research was to test whether five solid- and hollow-stem varieties of winter and spring wheat reduce survival of WSS in South Dakota. We reported that solid-stem varieties had significantly lower numbers of WSS larvae, and this effect was especially evident when WSS infestation rates exceeded 15%. We also observed that the yield of solid-stem varieties was significantly lower than hollow-stem varieties when the abundance of WSS was low, but not when populations of WSS were relatively high. We did not observe consistent differences in grain quality between solid- and hollow-stem varieties, however, and in case of protein levels of grain, solid-stem wheat varieties performed better than hollow-stem wheat. We conclude that solid-stem varieties of wheat appear to effectively suppress WSS survival, and reduced yield of these varieties is less apparent when populations of C. cinctus are high enough to affect the yield of hollow-stem wheat. This is the first report to describe the effectiveness of solid-stem varieties of wheat on WSS in South Dakota. More research in the state is necessary before more robust conclusions can be drawn. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

A comparative study among methods used for wheat flour analysis and for measurements of gluten properties using the Wheat Gluten Quality Analyser (WGQA

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Maria Cristina Ferrari

2014-06-01

Full Text Available This study aimed at comparing both the results of wheat flour quality assessed by the new equipment Wheat Gluten Quality Analyser (WGQA and those obtained by the extensigraph and farinograph. Fifty-nine wheat samples were evaluated for protein and gluten contents; the rheological properties of gluten and wheat flour were assessed using the WGQA and the extensigraph/farinograph methods, respectively, in addition to the baking test. Principal component analysis (PCA and linear regression were used to evaluate the results. The parameters of energy and maximum resistance to extension determined by the extensigraph and WGQA showed an acceptable level for the linear correlation within the range from 0.6071 to 0.6511. The PCA results obtained using WGQA and the other rheological apparatus showed values similar to those expected for wheat flours in the baking test. Although all equipment used was effective in assessing the behavior of strong and weak flours, the results of medium strength wheat flour varied. WGQA has shown to use less amount of sample and to be faster and easier to use in relation to the other instruments used.

Effect of Sucrose Esters on the Physicochemical Properties of Wheat ...

African Journals Online (AJOL)

HP

Purpose: To investigate the effect of sucrose esters on the physicochemical properties of wheat starch. Methods: Sucrose ester was mixed with wheat starch extracted from normal soft wheat cultivars and heated. Change in starch properties arising from the interaction between were assessed for starch blue value, viscosity ...

7 CFR 810.2204 - Grades and grade requirements for wheat.

Science.gov (United States)

2010-01-01

... 7 Agriculture 7 2010-01-01 2010-01-01 false Grades and grade requirements for wheat. 810.2204... OFFICIAL UNITED STATES STANDARDS FOR GRAIN United States Standards for Wheat Principles Governing the Application of Standards § 810.2204 Grades and grade requirements for wheat. (a) Grades and grade requirements...

Natural Variation in Grain Composition of Wheat and Related Cereals

OpenAIRE

Shewry, Peter R; Hawkesford, Malcolm J; Piironen, Vieno; Lampi, Anna-Maija; Gebruers, Kurt; Boros, Danuta; Andersson, Annica AM; Åman, Per; Rakszegi, Mariann; Bedo, Zoltan; Ward, Jane L

2013-01-01

The wheat grain comprises three groups of major components, starch, protein, and cell wall polysaccharides (dietary fiber), and a range of minor components that may confer benefits to human health. Detailed analyses of dietary fiber and other bioactive components were carried out under the EU FP6 HEALTHGRAIN program on 150 bread wheat lines grown on a single site, 50 lines of other wheat species and other cereals grown on the same site, and 23−26 bread wheat lines grown in six environments. P...

Bread-Making Quality of Standard Winter Wheat Cultivars

OpenAIRE

Ćurić, Duška; Novotni, Dubravka; Bauman, Ingrid; Krička, Tajana; Jukić, Željko; Voća, Neven; Kiš, Darko

2009-01-01

The purpose of this study was to define an impact of the cultivar, year and cultivation area of the standard Croatian winter wheat on the bread-making quality. The bread-making quality of cultivars ‘Divana’, ‘Žitarka’ and ‘Sana’ from the crop years 1998, 2000, 2002, 2004 and 2006, and from Zagreb and Osijek location was analyzed. Wheat from the cultivar tests cultivated under the same agro technological conditions was used for this testing. The tested winter wheat bread-making quality primari...

Colour characteristics of winter wheat grits of different grain size

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Horváth Zs. H.

2015-01-01

Full Text Available Nowadays, wheat has spread all over the world due to its extensive usability. The colour of wheat grits is very important for the milling and baking industry because it determines the colour of the products made from it. The instrumental colour measuring is used, first of all, for durum wheat. We investigated the relationship between colour characteristics and grain size in the case of different hard aestivum wheats. We determined the colour using the CIE (Commission Internationale de l’Eclairage 1976 L*, a*, b* colour system measured by MINOLTA CR-300 tristimulus colorimeter. After screening the colour of the wheat fractions of different grain size, grits was measured wet and dry. We determined the L*, a*, b* colour co-ordinates and the whiteness index, too. To evaluate the values we had obtained, we used analysis of variance and regression analysis. We pointed out that the colour of wheat grits of different grain size is dependent on the hardness index of wheat. The lightness co-ordinate (L* of grits of the harder wheat is smaller, while a* and b* co-ordinates are higher. We also found that while grain size rises, the L* co-ordinate decreases and a*, b* values increase in the case of every type of wheat. The colour of grits is determined by the colour of fractions of 250-400 μm in size, independently from the average grain size. The whiteness index and the L* colour co-ordinate have a linear relation (R2 = 0.9151; so, the determination of whiteness index is not necessary. The L* value right characterizes the whiteness of grits.

Development of dynamic wheat crop model in ISAM and estimation of impacts of environmental factors on wheat production in India

Science.gov (United States)

Gahlot, S.; Lin, T. S.; Jain, A. K.; Baidya Roy, S.; Sehgal, V. K.; Dhakar, R.

2017-12-01

With changing environmental conditions, such as climate and elevated atmospheric CO2 concentrations, questions about food security can be answered by modeling crops based on our understanding of the dynamic crop growth processes and interactions between the crops and their environment in the form of carbon, water and energy fluxes. These interactions and their effect on cropland ecosystems are non-linear because of the feedback mechanisms. Hence, process-based modelling approach can be used to conduct numerical experiments to derive insights into these processes and interactive feedbacks. In this study we have implemented dynamic crop growth processes for wheat into a data-modeling framework, Integrated Science Assessment Model (ISAM), to estimate the impacts of different factors like CO2 fertilization, irrigation, nitrogen limitation and climate change on wheat in India. In specific, we have implemented wheat-specific phenology, C3 photosynthesis mechanism and phenology-specific carbon allocation schemes for assimilated carbon to leaf, stem, root and grain pools. Crop growth limiting stress factors like nutrients, temperature and light have been included. The impact of high temperatures on leaf senescence, anthesis and grain filling has been modeled and found to be causing significant reduction in yield in the recent years. Field data from an experimental wheat site located at the Indian Agricultural Research Institute (IARI), New Delhi, India has been collected for aboveground biomass and leaf area index (LAI) for two growing seasons 2014-15 and 2015-16. This data has been used to study the phenology, growing season length, thermal requirements and growth stages of wheat. Using the field data, the dynamic model for wheat has been evaluated for the site level seasonal variability in leaf area index (LAI) and aboveground biomass. The variations in carbon, water and energy fluxes, plant height and rooting depth have been analyzed on the site level. Model experiments

New spring wheat varieties ‘Panianka’ and ‘Diana’

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О. А. Демидов

2016-12-01

Full Text Available Purpose. To create new competitive spring wheat varieties. Methods. Field study, laboratory test. Results. Based on the competitive variety trial, bread spring wheat line ‘Lutescens 07-26’ has been selected due to high values of such traits as resistance to fungal diseases, grain qua­lity(protein content accounted for 15.0%, 1000 kernel weight (44.6 g productivity (3.92 t/ha and lodging resistance (9 points. In 2011, it was submitted to the State variety testing as ‘Panianka’ variety. Durum spring wheat line ‘Leukurum 08-11’ was characterized by a number of positive traits: quite a high productivity (3.05 t/ha, short stem (79 cm, resistance to fungal diseases and lodging(9 points, and in 2011 it was submitted to the State variety testing as ‘Diana’ variety. According to the results of the State variety testing in 2012–2014, spring wheat varieties ‘Panianka’ and ‘Diana’ in 2015 were put on the State Register of plant varieties suitable for dissemination in Ukraine. Conclusions. For farms in Forest-Steppe and Polissia zones of Ukraine, bread and durum spring wheat varieties were bred by V. M.Remeslo Myronivka Institute of Wheat of NAAS of Ukraine that demonstrated rather high potential of productivity and adaptability to stress conditions. This goes to prove that cultivation of domestic spring wheat varieties will promote formation of high and quality grain yields.

Residual, direct and cumulative effect of zinc application on wheat and rice yield under rice-wheat syst

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R. Khan

2009-05-01

Full Text Available Zinc (Zn deficiency is prevalent particularly on calcareous soils of arid and semiarid region. A field experiment was conducted to investigate the direct, residual and cumulative effect of zinc on the yield of wheat and rice in permanent layout for two consecutive years, 2004-05 and 2005-06 at Arid Zone Research Institute D.I. Khan. Soil under study was deficient in Zn (0.8 mg kg-1. Effect of Zn on yield, Zn concentrations in leaf and soils were assessed using wheat variety Naseer-2000 and rice variety IRRI-6. Three rates of Zn, ranging from 0 to 10 kg ha-1 in soil, were applied as zinc sulphate (ZnSO4. 7H2O along with basal dose fertilization of nitrogen, phosphorus and potassium. Mature leaf and soil samples were collected at panicle initiation stage. The results showed that grain yield of wheat and rice was significantly increased by the direct application of 5 and 10 kg Zn ha-1. Highest grain yield of wheat (5467 kg ha-1 was recorded with the direct application of 10 kg Zn ha-1 while 4994 kg ha-1 was recorded with the cumulative application of 10 kg Zn ha-1 but the yield increase due to residual effect of Zn was statistically lower than the cumulative effect of Zn. Maximum paddy yield was recorded with the cumulative application ofZn followed by residual and direct applied 10 and 5 kg Zn kg ha-1, respectively. Zn concentration in soils ranged from 0.3 to 1.5 mg kg-1 in wheat and 0.24 to 2.40 mg kg-1 in rice, while in leaves it ranged from 18-48 mg kg-1 in wheat and 15-52 mg kg-1 in rice. The concentration of Zn in soil and leaves increased due to the treatments in the order; cumulative > residual > direct effect > control (without Zn. The yield attributes like 1000- grain weight, number of spikes, spike length and plant height were increased by the residual, direct and cumulative effect of Zn levels; however, the magnitude of increase was higher in cumulative effect than residual and direct effect of Zn, respectively. Under Zn-deficient soil

Influence of Higher Wheat Prices on Ready-to-Eat Cereal Companies in 2010

OpenAIRE

HERNANDEZ LOERA CHAVEZ, PABLO

2013-01-01

In 2010, sever droughts and fires destroyed 20 percent of Russia’s wheat crop. This incident increased dramatically the prices of wheat worldwide. This paper studies the financial consequences that these higher wheat prices brought to companies that use wheat to manufacture ready-to-eat cereal and wheat-related products. The international cereal companies selected for this study were Kellogg Company, Nestlé Group and Ralcorp Holdings, Inc., owner of Post Foods Company. Keywords: Wheat, ce...

Quality characteristics of U.S. soft white and club wheat

Science.gov (United States)

U.S. soft white wheat from the Pacific Northwest states of Washington, Oregon and Idaho is a premium quality, versatile soft wheat. Soft White wheat (SWW) is comprised of winter and spring-sown varieties; spike morphology further delineates the class into ‘common’ (lax) and club sub-classes. The reg...

Fungal flora and deoxynivalenol (DON) level in wheat from Jeddah ...

African Journals Online (AJOL)

This study aimed to explore the fungal flora along with the DON concentration in the collected wheat samples from Jeddah market to correlate between this flora and the detected DON. Whole grain wheat samples were collected from Jeddah market and this represents imported and locally produced wheat. The results ...

Wheat-straw as roughage component in finishing diets of growing ...

African Journals Online (AJOL)

to use wheat-straw in diets, this study was conducted (i) to determine the degree whereto the inclusion of wheat-straw in finishing diets for lambs affected digestibility, N retention and animal performance, and (ii) to evaluate ammoniated wheat straw as roughage component in a balanced diet, containing. >60% concentrates ...

Sources of stem rust resistance in wheat-alien introgression lines

Science.gov (United States)

Stem rust, caused by Puccinia graminis f. sp. tritici, is one of the most devastating diseases of wheat and the novel highly virulent race of TTKSK and its lineage are threatening wheat production worldwide. The objective of the study was to identify new sources of resistance in wheat-alien introgre...

Study on genetic diversity in Pakistani wheat varieties using simple ...

African Journals Online (AJOL)

STORAGESEVER

2009-09-01

Sep 1, 2009 ... Common wheat (Triticum aestivum L.) is a grass species, cultivated world wide. Globally, it is ... A high degree of genetic polymorphism was observed among the wheat varieties with average ... cold, heat, soil salinization and water logging and (ii) ... and to find genetically most diverse genotypes of wheat.

Structural and molecular basis of starch viscosity in hexaploid wheat.

Science.gov (United States)

Ral, J-P; Cavanagh, C R; Larroque, O; Regina, A; Morell, M K

2008-06-11

Wheat starch is considered to have a low paste viscosity relative to other starches. Consequently, wheat starch is not preferred for many applications as compared to other high paste viscosity starches. Increasing the viscosity of wheat starch is expected to increase the functionality of a range of wheat flour-based products in which the texture is an important aspect of consumer acceptance (e.g., pasta, and instant and yellow alkaline noodles). To understand the molecular basis of starch viscosity, we have undertaken a comprehensive structural and rheological analysis of starches from a genetically diverse set of wheat genotypes, which revealed significant variation in starch traits including starch granule protein content, starch-associated lipid content and composition, phosphate content, and the structures of the amylose and amylopectin fractions. Statistical analysis highlighted the association between amylopectin chains of 18-25 glucose residues and starch pasting properties. Principal component analysis also identified an association between monoesterified phosphate and starch pasting properties in wheat despite the low starch-phosphate level in wheat as compared to tuber starches. We also found a strong negative correlation between the phosphate ester content and the starch content in flour. Previously observed associations between internal starch granule fatty acids and the swelling peak time and pasting temperature have been confirmed. This study has highlighted a range of parameters associated with increased starch viscosity that could be used in prebreeding/breeding programs to modify wheat starch pasting properties.

Multi-wheat-model ensemble responses to interannual climatic variability

DEFF Research Database (Denmark)

Ruane, A C; Hudson, N I; Asseng, S

2016-01-01

We compare 27 wheat models' yield responses to interannual climate variability, analyzed at locations in Argentina, Australia, India, and The Netherlands as part of the Agricultural Model Intercomparison and Improvement Project (AgMIP) Wheat Pilot. Each model simulated 1981–2010 grain yield, and ......-term warming, suggesting that additional processes differentiate climate change impacts from observed climate variability analogs and motivating continuing analysis and model development efforts.......We compare 27 wheat models' yield responses to interannual climate variability, analyzed at locations in Argentina, Australia, India, and The Netherlands as part of the Agricultural Model Intercomparison and Improvement Project (AgMIP) Wheat Pilot. Each model simulated 1981–2010 grain yield, and we...... evaluate results against the interannual variability of growing season temperature, precipitation, and solar radiation. The amount of information used for calibration has only a minor effect on most models' climate response, and even small multi-model ensembles prove beneficial. Wheat model clusters reveal...

Physical characteristics of some wheat genotypes cultivated in Lake District of Turkey

Directory of Open Access Journals (Sweden)

Hülya GÜL

2012-12-01

Full Text Available This study was carried out to determine the physical characteristics of wheat genotypes cultivated in lakes district of Turkey. The genotypes were collected from the center of Isparta and Burdur province, districts and selected five different villages in this district at harvest in 2011. Totaly 19 genotypes named as; Hard Wheat, Red Kazmalı Wheat, Lavanta, Red Wheat, Burgaz, Osmaniye and Yunak (Landraces, Kızıltan-91, İzmir 85, Bezostoya, Ankara 98, Sönmez 2001, Çeşit-1252, Hatay 86, Mirzabey, Kunduru-1149, Gerek-79, Gediz-75 and Cumhuriyet-75 (Wheat registered cultivars were collected from these districts. Physical characteristics of the wheat samples brought to laboratory were analyzed as completely randomized design with three replications. Foreign matters of wheats were determined according to TS 2974 standards. 4 genotypes were found at second degree, 5 genotypes were at third degree and remaining 10 genotypes were found out of these rating. Highest thousand kernel weight and hectoliter weight were determined on Mirzabey and Sönmez 2001 respectively in bread wheat varieties while highest thousand kernel weight and hectoliter weight were determeined on Kunduru 1149 and Burgaz respectively in durum wheat varieties.

Impact of Future Climate Change on Wheat Production: A Simulated Case for China’s Wheat System

OpenAIRE

Dengpan Xiao; Huizi Bai; De Li Liu

2018-01-01

With regard to global climate change due to increasing concentration in greenhouse gases, particularly carbon dioxide (CO2), it is important to examine its potential impact on crop development and production. We used statistically-downscaled climate data from 28 Global Climate Models (GCMs) and the Agricultural Production Systems sIMulator (APSIM)–Wheat model to simulate the impact of future climate change on wheat production. Two future scenarios (RCP4.5 and RCP8.5) were used for atmos...

Effects of Layering Milling Technology on Distribution of Green Wheat Main Physicochemical Parameters

OpenAIRE

Tian, Shuang-Qi; Li, Yong-Heng; Chen, Zhi-Cheng; Qiao, Yong-Feng

2017-01-01

With layered milling flour technology, the efficiency of the nutrient distribution and hardness was demonstrated with the green and normal wheat separation milling. The results showed that the total content of amino acid in green wheat was 8.3%–13.0% higher compared to the common wheat. Comparing the main nutriments Se, Fe, and Ca between green wheat and common wheat, the results showed that different milling treatment methods are capable of separating the different wheat flour from endosperm...

HARMFUL ENTOMOPHAUNA IMPACTS ON QUALITY OF MERCANTILE WHEAT AND FLOUR

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Stanislav Milošević

2005-06-01

Full Text Available Presence of harmful insects and mites is almost inevitable in mercantile wheat stored in warehouses. They cause significant damages and therefore it is necessary to perform pest control and chemical treatment. Study of harmful and destructive entomophauna impacts on quality of mercantile wheat and flour has been presented. Mercantile wheat stored in silos has been used in the study. Testing of quality of rheological properties and presence of harmful entomophauna were done in the labs within the silos «Žitoprerada d.o.o. Valpovo « and Department of Plant Protection on Faculty of Agriculture in Osijek. Presence of harmful entomophauna, quality of mercantile wheat stored in a warehouse and rheological flour properties were determined. The following harmful entomophauna were found: mites (Acarinae, primary pests of order Coleoptera and Lepidoptera, secondary pests of order Coleoptera and other insects found belong to Coleoptera, Psocoptera and useful insects of Hymenoptera orders. Influence of harmful entomophauna on quality of mercantile wheat is manifested by reduced quality of stored wheat due to decrease of water content and hectoliter mass. Lower quality of flour obtained by milling of infected wheat is manifested by change in rheological properties: dough stability, water absorption, growth, resistance, energy, extensibility, maximum resistance, start of puffing up, and viscosity.

Wheat (Triticum aestivum L.) transformation using immature embryos.

Science.gov (United States)

Ishida, Yuji; Tsunashima, Masako; Hiei, Yukoh; Komari, Toshihiko

2015-01-01

Wheat may now be transformed very efficiently by Agrobacterium tumefaciens. Under the protocol hereby described, immature embryos of healthy plants of wheat cultivar Fielder grown in a well-conditioned greenhouse were pretreated with centrifuging and cocultivated with A. tumefaciens. Transgenic wheat plants were obtained routinely from between 40 and 90 % of the immature embryos, thus infected in our tests. All regenerants were normal in morphology and fully fertile. About half of the transformed plants carried single copy of the transgene, which are inherited by the progeny in a Mendelian fashion.

Biochar: a novel tool to enhance wheat productivity and soil fertility on sustainable basis under wheat-maize-wheat cropping pattern

International Nuclear Information System (INIS)

Ali, K.; Jan, M.T.; Munsif, F.

2015-01-01

The application of organic matter is an important element for preserving long-term soil fertility because it is the reservoir of metabolic energy, which drives soil biological processes involved in nutrient availability. Two years field experiments were conducted for the assessment of the interactive effect of biochar with synthetic fertilizer and farmyard manure. Biochar application at the rate of 25 t ha-1 increased spikes m-2 by 6.64%, grains spike-1 by 5.6%, thousand grain weight by 3.73, grain yield by 9.96%, biological yield by 15.36%, phosphorus use efficiency by 29.03% and grain phosphorus uptake by 19.67% in comparison with no biochar treated plots. Likewise, biochar application significantly increased soil carbon (C), phosphorus (P) and potassium (K) by 54.02, 61.39 and 18.41%, respectively. Similarly, farmyard manure at the rate of 10 t ha-1 resulted in significantly higher yield components, grain yield, soil C, P and K than 5 t ha-1. Likewise, mineral nitrogen application at the rate of 120 kg ha-1 improved wheat yield and yield components with no significant effect on soil C, P and K contents. It is concluded that application biochar either alone or in combination with FYM or mineral nitrogen improved yield and yield components of wheat and soil quality in wheat-maize cropping pattern. (author)

NUTRITIONAL CHARACTERISTICS OF EMMER WHEAT VARIETIES

Directory of Open Access Journals (Sweden)

Magdaléna Lacko - Bartošová

2015-02-01

Full Text Available The objective of this study was to evaluate the nutritional compounds (fat, sugars, crude protein, soluble fiber, ash and starch of four emmer wheat varieties grown under the conditions of organic farming system. The experiment was established on Scientific Research base Dolná Malanta, near Nitra in Slovakia during 2010 – 2011 and 2011 – 2012 growing seasons. Nutritional parameters, except crude protein content, were not influenced by the variety and weather conditions. Agnone variety had the highest content of fat, crude protein and starch but the lowest content of soluble dietary fiber. The lowest values of fat, crude protein had Molise sel Colli variety; Farvento variety had the lowest sugars and starch content. Emmer wheat as ancient wheat has a unique composition in secondary components, such as starch, which may play a role as functional food ingredients.

Wheat shorts in diets of gestating swine.

Science.gov (United States)

Young, L G; King, G L

1981-03-01

Sixty-four gilts were assigned to be bred at first or third observed estrus and fed gestation diets of pelleted wheat shorts with a free choice mineral-vitamin supplement or fortified corn-soybean meal. Only the dietary effects are included in this report. The gilts were fed their respective diets starting at 25 days after insemination. The experiment continued through three gestation-lactation cycles. Females fed the wheat shorts received less digestible energy during gestation and weighed less at day 109 of gestation and days 1, 7 and 21 of lactation in each of the three gestation-lactation periods. Females fed wheat shorts had lighter pigs at birth, weaned more pigs per litter in each parity and returned to estrus more slowly after weaning than females fed a corn-soybean meal diet. Results of a metabolism trial conducted with 12 barrows revealed that wheat shorts contained approximately 2.93 kcal digestible energy/kg dry matter and had an apparent protein digestibility of 72%, compared with values of 4.0 kcal and 86%, respectively, for the corn-soybean meal diets.

Molecular genetic studies on irradiated wheat plants

International Nuclear Information System (INIS)

Saleh, O.M.

2002-01-01

Composite genotype(octamer hybrid) was obtained from crossing among eight Egyptian hexaploid wheat cultivars differing in their tolerance to drought stress to produce a genotype, which can economize on the irrigation water requirements or can tolerate drought stress. Gamma irradiation with 10-Krad was used to induce mutations, which could improve drought tolerance for this composite. From eight Egyptian wheat cultivars, two were chosen as drought tolerant and drought sensitive genotypes (G-160 and Sk-61, respectively. They were evaluated along with their F1 and F2 for their relative drought tolerance for some yield-related traits. Bulked segregating analysis developed some RAPD and SSR markers with different primers, which were considered as molecular for drought tolerance in wheat. Hal 2-like gene was introduced into Egyptian wheat cultivar G-164 via micro projectile bombardment. Two putative transgenic plants were successfully detected by leaf painting with the herbicide basta. PCR/ Southern blotting analysis indicated the presence of both/either bar and/or Hal 2-like genes in the genomic background of the two transgenic plants

Boron rates for triticale and wheat crops

Directory of Open Access Journals (Sweden)

Corrêa Juliano Corulli

2005-01-01

Full Text Available No reports are registered on responses to boron fertilization nutrient deficiency and toxicity in triticale crops. The aim of this study was to evaluate triticale response to different rates of boron in comparison to wheat in an hapludox with initial boron level at 0.08 mg dm-3 4 4 factorial design trial completely randomized blocks design (n = 4. Boron rates were 0; 0.62; 1.24 and 1.86 mg dm-3; triticale cultivars were IAC 3, BR 4 and BR 53 and IAPAR 38 wheat crop was used for comparison. The wheat (IAPAR 38 crop presented the highest boron absorption level of all. Among triticale cultivars, the most responsive was IAC 53, presenting similar characteristics to wheat, followed by BR 4; these two crops are considered tolerant to higher boron rates in soil. Regarding to BR 53, no absorption effect was observed, and the cultivars was sensitive to boron toxicity. Absorption responses differed for each genotype. That makes it possible to choose and use the best-adapted plants to soils with different boron rates.

Technological characteristics of yeast-containing cakes production using waxy wheat flour

Directory of Open Access Journals (Sweden)

K. Iorgachova

2016-12-01

Full Text Available This article shows the feasibility of using waxy wheat flour, the starch of which doesn`t contain amylose, in order to stabilize the quality of yeast-containing cakes. The influence of the waxy wheat flour mass fraction and the stage of its adding on the physical, chemical and organoleptic characteristics of the products are studied. According to the technological properties of a new type of wheat flour, two methods of its adding are proposed ‒ adding the maximum amount of waxy wheat flour at dough kneading stage or using the mixture of waxy and bakery wheat flours for kneading sourdough and dough. It is shown that the replacement of 60 % bakery wheat flour with waxy wheat flour in the recipe of yeast-containing cakes at the dough kneading stage contributes to the production of products with higher quality and organoleptic characteristics compared to both the control and cakes based on a mixture of different types of wheat flour. These samples are characterized by increased by 1.7 – 11.3 % specific volume, porosity – 2.6 – 5.5 % and the total deformation of the crumb – 6.5 – 41.4 %.

Reaction of Rust on Some Bread Wheat Varieties in Çukurova Region

OpenAIRE

AY, Hasan

2013-01-01

This study was conducted with 126 varieties of wheat between 2009-2010 years in Adana. There has not been artificially inoculated yellow, leaf and stem rusts. Races of rust in natural were evaluated in both years. Between 2009-2010 this study was conducted in Adana, with 126 varieties of bread wheat. In both years, only the natural environment leaf rust races inoculated for assessments reactions of bread wheat. According to results, 49 bread wheat varieties were found resistant, 6 bread wheat...

[Bread from the bioactivated wheat grain with the raised nutrition value].

Science.gov (United States)

Ponomareva, E I; Alekhina, N N; Bakaeva, I A

2016-01-01

Bread from the bioactivated grain of wheat differs in high content of dietary fibers, minerals and vitamins compared to traditional types of bread, but, despite this, it has low protein and lysine content. The aim of the study was the development of bread with the raised nutritional value from the bioactivated wheat grain by use of flour from cake of wheat germ (6.5%). It has been established that the flour from wheat germ has protein biological value (77.4%) and the amino acid score according to lysine (100.3%) above 12 and 40.5%, respectively, compared with those from bioactivated wheat. During calculation of nutritive, biological and energy value of products from the bioactivated wheat grain it is revealed that the biological value of bread from wheat germ flour slightly exceeded the biological value of the bread without its addition and amounted to 70.80%, due to a high protein content and a balanced amino acid composition. The protein content in the test sample of bakery products was 19.0% higher than the control, phosphorus - 13.0%, zinc - 50.0%.

Experimental mutation of disease resistance in wheat

International Nuclear Information System (INIS)

Hanisova, A.; Hanis, M.; Knytl, V.; Cerny, J.

1980-01-01

In 1968 to 1974, 19 cultivars and lines of wheat were treated with mutagens (i.e., with X rays, gamma radiation, neutrons, EMS). ALtogether 140 lines were obtained showing better resistance and/or tolerance to black stem rust, yellow rust, stem rust of wheat, powdery mildew of cereals, and root-rot of wheat. The frequency of the induced mutations was sufficiently high, i.e., 0.0012 to 0.078 mutants per 100 plants of M 2 . The major part of mutant lines showed a lower agronomical value due to negative pleiotropy of mutant genes and a changed genetic background of mutants. Some mutant lines can be used as the starting material in hybridization programmes. (author)

Quality characteristics of northern-style Chinese steamed bread prepared from soft red winter wheat flours with waxy wheat flour substitution

Science.gov (United States)

Quality characteristics of Chinese steamed bread (CSB) prepared from two soft red winter (SRW) wheat flours blended with 0-30% waxy wheat flour (WWF) were determined to estimate the influence of starch amylose content. The increased proportion of WWF in blends raised mixograph absorption with insign...

Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression

Directory of Open Access Journals (Sweden)

Lemieux Sébastien

2006-08-01

Full Text Available Abstract Background The identification of differentially expressed genes (DEGs from Affymetrix GeneChips arrays is currently done by first computing expression levels from the low-level probe intensities, then deriving significance by comparing these expression levels between conditions. The proposed PL-LM (Probe-Level Linear Model method implements a linear model applied on the probe-level data to directly estimate the treatment effect. A finite mixture of Gaussian components is then used to identify DEGs using the coefficients estimated by the linear model. This approach can readily be applied to experimental design with or without replication. Results On a wholly defined dataset, the PL-LM method was able to identify 75% of the differentially expressed genes within 10% of false positives. This accuracy was achieved both using the three replicates per conditions available in the dataset and using only one replicate per condition. Conclusion The method achieves, on this dataset, a higher accuracy than the best set of tools identified by the authors of the dataset, and does so using only one replicate per condition.

Evaluation of miR-21 and miR-375 as prognostic biomarkers in esophageal cancer

DEFF Research Database (Denmark)

Winther, Mette; Alsner, Jan; Tramm, Trine

2015-01-01

analyses identified miR-21 as an independent prognostic marker for DSS in EAC [HR 3.52 (95% CI 1.06-11.69)]. High miR-375 was not correlated with improved prognosis in either histology. However, Forest plots demonstrated that both miR-21 and miR-375 were of prognostic impact in ESCC. CONCLUSION...... chemotherapy were analyzed. Expression levels of miR-21 and miR-375 were quantified using Affymetrix GeneChip miRNA 1.0 Array. The Cox proportional hazards model was used to assess the correlation of miR-21 and miR-375 with disease-specific survival (DSS) and overall survival (OS). Forest plots were performed...... to evaluate the prognostic impact of miR-21 and miR-375 in the present study and previously published reports. RESULTS: In ESCC, patients with miR-21 expression levels above median showed a trend towards poorer DSS and OS. When dividing miR-21 expression by tertiles, high levels of miR-21 significantly...

Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life.

Science.gov (United States)

Rey, Benjamin; Dégletagne, Cyril; Duchamp, Claude

2016-12-01

In this article, we present differentially expressed gene profiles in the pectoralis muscle of wild juvenile king penguins that were either naturally acclimated to cold marine environment or experimentally immersed in cold water as compared with penguin juveniles that never experienced cold water immersion. Transcriptomic data were obtained by hybridizing penguins total cDNA on Affymetrix GeneChip Chicken Genome arrays and analyzed using maxRS algorithm , " Transcriptome analysis in non-model species: a new method for the analysis of heterologous hybridization on microarrays " (Dégletagne et al., 2010) [1] . We focused on genes involved in multiple antioxidant pathways. For better clarity, these differentially expressed genes were clustered into six functional groups according to their role in controlling redox homeostasis. The data are related to a comprehensive research study on the ontogeny of antioxidant functions in king penguins, "Hormetic response triggers multifaceted anti-oxidant strategies in immature king penguins (Aptenodytes patagonicus)" (Rey et al., 2016) [2] . The raw microarray dataset supporting the present analyses has been deposited at the Gene Expression Omnibus (GEO) repository under accessions GEO: GSE17725 and GEO: GSE82344.

TRAIL pathway is associated with inhibition of colon cancer by protopanaxadiol

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Zhiyu Zhang

2015-01-01

Full Text Available Among important components of American ginseng, protopanaxadiol (PPD showed more active anticancer potential than other triterpenoid saponins. In this study, we determined the in vivo effects of PPD in a mouse cancer model first. Then, using human colorectal cancer cell lines, we observed significant cancer cell growth inhibition by promoting G1 cell cycle redistribution and apoptosis. Subsequently, we characterized the downstream genes targeted by PPD in HCT-116 cancer cells. Using Affymetrix high density GeneChips, we obtained the gene expression profile of the cells. Microarray data indicated that the expression levels of 76 genes were changed over two-fold after PPD, of which 52 were upregulated while the remaining 24 were downregulated. Ingenuity pathway analysis of top functions affected was carried out. Data suggested that by regulating the interactions between p53 and DR4/DR5, the tumor necrosis factor-related apoptosis-inducing ligand (TRAIL pathway played a key role in the action of PPD, a promising colon cancer inhibitory compound.

TRAIL pathway is associated with inhibition of colon cancer by protopanaxadiol.

Science.gov (United States)

Zhang, Zhiyu; Li, Zejuan; Wu, Xiaohui; Zhang, Chun-Feng; Calway, Tyler; He, Tong-Chuan; Du, Wei; Chen, Jianjun; Wang, Chong-Zhi; Yuan, Chun-Su

2015-01-01

Among important components of American ginseng, protopanaxadiol (PPD) showed more active anticancer potential than other triterpenoid saponins. In this study, we determined the in vivo effects of PPD in a mouse cancer model first. Then, using human colorectal cancer cell lines, we observed significant cancer cell growth inhibition by promoting G1 cell cycle redistribution and apoptosis. Subsequently, we characterized the downstream genes targeted by PPD in HCT-116 cancer cells. Using Affymetrix high density GeneChips, we obtained the gene expression profile of the cells. Microarray data indicated that the expression levels of 76 genes were changed over two-fold after PPD, of which 52 were upregulated while the remaining 24 were downregulated. Ingenuity pathway analysis of top functions affected was carried out. Data suggested that by regulating the interactions between p53 and DR4/DR5, the tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) pathway played a key role in the action of PPD, a promising colon cancer inhibitory compound. Copyright © 2014 Japanese Pharmacological Society. Production and hosting by Elsevier B.V. All rights reserved.

Pharmacodynamic/Pharmacogenomic Modeling of Insulin Resistance Genes in Rat Muscle After Methylprednisolone Treatment: Exploring Regulatory Signaling Cascades

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Zhenling Yao

2008-01-01

Full Text Available Corticosteroids (CS effects on insulin resistance related genes in rat skeletal muscle were studied. In our acute study, adrenalectomized (ADX rats were given single doses of 50 mg/kg methylprednisolone (MPL intravenously. In our chronic study, ADX rats were implanted with Alzet mini-pumps giving zero-order release rates of 0.3 mg/kg/h MPL and sacrificed at various times up to 7 days. Total RNA was extracted from gastrocnemius muscles and hybridized to Affymetrix GeneChips. Data mining and literature searches identified 6 insulin resistance related genes which exhibited complex regulatory pathways. Insulin receptor substrate-1 (IRS-1, uncoupling protein 3 (UCP3, pyruvate dehydrogenase kinase isoenzyme 4 (PDK4, fatty acid translocase (FAT and glycerol-3-phosphate acyltransferase (GPAT dynamic profiles were modeled with mutual effects by calculated nuclear drug-receptor complex (DR(N and transcription factors. The oscillatory feature of endothelin-1 (ET-1 expression was depicted by a negative feedback loop. These integrated models provide test- able quantitative hypotheses for these regulatory cascades.

Evaluation of DNA microarray results in the Toxicogenomics Project (TGP) consortium in Japan.

Science.gov (United States)

Noriyuki, Nakatsu; Igarashi, Yoshinobu; Ono, Atsushi; Yamada, Hiroshi; Ohno, Yasuo; Urushidani, Tetsuro

2012-01-01

An important technology used in toxicogenomic drug discovery research is the microarray, which enables researchers to simultaneously analyze the expression of a large number of genes. To build a database and data analysis system for use in assessing the safety of drugs and drug candidates, in 2002 we conducted a 5-year collaborative study in the Toxicogenomics Project (TGP1) in Japan. Experimental data generated by such studies must be validated by different laboratories for robust and accurate analysis. For this purpose, we conducted intra- and inter-laboratory validation studies with participating companies in the second collaborative study in the Toxicogenomics Project (TGP2). Gene expression in the liver of rats treated with acetaminophen (APAP) was independently examined by the participating companies using Affymetrix GeneChip microarrays. The intra- and inter-laboratory reproducibility of the data was evaluated using hierarchical clustering analysis. The toxicogenomics results were highly reproducible, indicating that the gene expression data generated in our TGP1 project is reliable and compatible with the data generated by the participating laboratories.

Variability in wheat: factors affecting its nutritional value

NARCIS (Netherlands)

Gutierrez del Alamo Oms, A.; Verstegen, M.W.A.; Hartog, den L.A.; Villamide, M.J.

2008-01-01

Wheat is a common raw material used to provide energy in broiler diets. Its apparent metabolisable energy and its influence on broiler performance varies between wheat samples. Reasons for that variability can be classified as intrinsic (variety, chemical composition) and extrinsic factors (growing

7 CFR 782.12 - Filing FSA-750, End-Use Certificate for Wheat.

Science.gov (United States)

2010-01-01

... 7 Agriculture 7 2010-01-01 2010-01-01 false Filing FSA-750, End-Use Certificate for Wheat. 782.12... Certificate Program § 782.12 Filing FSA-750, End-Use Certificate for Wheat. (a) Each entity that imports wheat originating in Canada shall, for each entry into the U.S., obtain form FSA-750, End-Use Certificate for Wheat...

Allelopathic activity of pakistan wheat genotypes against wild oat (Avena fatua L.)

International Nuclear Information System (INIS)

Mahmood, K.; Khaliq, A.; Cheema, Z.A.; Arshad, M.

2013-01-01

Wheat allelopathy can be manipulated for sustainable weed management in wheat based cropping systems. Bioassays were conducted to quantify the allelopathic potential of 35 indigenous wheat genotypes against germination and seedling growth of wild oat (Avena fatua L.). Foliar application of aqueous extracts of wheat straw, surface mulching and incorporation of wheat straw of different genotypes were employed for bioassays study. Results revealed the suppressive allelopathic activity of different wheat genotypes manifested in the form of impaired germination and retarded seedling growth of wild oat. A highly significant genotypic variation in allelopathic potential was observed for different traits. Germination of wild oat was decreased by 10-84% over control by different wheat genotypes. Likewise, over 70% reductions in seedling root and shoot dry weight of wild oat was also observed in V6007. Wheat genotypes viz. V6007, AS 2000, V6111, V6034, V4611, V7189, Uqa b 2000, Chanab 2000, Bhakkar 2002, Pak 81 and Rohtas 90 showed strongly inhibitory allelopathic activity against seedling growth of wild oat. V6007 exhibited highest suppression of wild oat. These studies confirm the suppressive allelopathic potential of indigenous wheat genotypes against wild oat that needs further to be explored under natural conditions. (author)

Split-gene system for hybrid wheat seed production.

Science.gov (United States)

Kempe, Katja; Rubtsova, Myroslava; Gils, Mario

2014-06-24

Hybrid wheat plants are superior in yield and growth characteristics compared with their homozygous parents. The commercial production of wheat hybrids is difficult because of the inbreeding nature of wheat and the lack of a practical fertility control that enforces outcrossing. We describe a hybrid wheat system that relies on the expression of a phytotoxic barnase and provides for male sterility. The barnase coding information is divided and distributed at two loci that are located on allelic positions of the host chromosome and are therefore "linked in repulsion." Functional complementation of the loci is achieved through coexpression of the barnase fragments and intein-mediated ligation of the barnase protein fragments. This system allows for growth and maintenance of male-sterile female crossing partners, whereas the hybrids are fertile. The technology does not require fertility restorers and is based solely on the genetic modification of the female crossing partner.

Dissipation and Residues of Dichlorprop-P and Bentazone in Wheat-Field Ecosystem

Directory of Open Access Journals (Sweden)

Xiaoxiao Feng

2016-05-01

Full Text Available Dichlorprop-P and bentazone have been widely used in the prevention and control of weeds in wheat field ecosystems. There is a concern that pesticide residues and metabolites remain on or in the wheat. Thus, the study of the determination and monitoring of their residues in wheat has important significance. A rapid, simple and reliable QuEChERS (Quick, Easy, Cheap, Effective, Rugged and Safe method was modified, developed and validated for the determination of dichlorprop-P, bentazone and its metabolites (6-hydroxy-bentazone and 8-hydroxy-bentazone in wheat (wheat plants, wheat straw and grains of wheat using high-performance liquid chromatography coupled with tandem mass spectrometry (HPLC-MS/MS. The average recoveries of this method ranged from 72.9% to 108.7%, and the limits of quantification (LOQs were 2.5–12 μg/kg. The dissipation and final residue of four compounds in three provinces (Shandong, Jiangsu and Heilongjiang in China were studied. The trial results showed that the half-lives of dichlorprop-P and bentazone were 1.9–2.5 days and 0.5–2.4 days in wheat plants, respectively. The terminal residues in grains of wheat and wheat straw at harvest were all much below the maximum residue limit (MRL of 0.2 mg/kg for dichlorprop-P and 0.1 mg/kg for bentazone established by the European Union (EU, Regulation No. 396/2005.

PCR-Based EST Mapping in Wheat (Triticum aestivum L.

Directory of Open Access Journals (Sweden)

J. PERRY GUSTAFSON

2009-04-01

Full Text Available Mapping expressed sequence tags (ESTs to hexaploid wheat is aimed to reveal the structure and function of the hexaploid wheat genome. Sixty eight ESTs representing 26 genes were mapped into all seven homologous chromosome groups of wheat (Triticum aestivum L using a polymerase chain reaction technique. The majority of the ESTs were mapped to homologous chromosome group 2, and the least were mapped to homologous chromosome group 6. Comparative analysis between the EST map from this study and the EST map based on RFLPs showed 14 genes that have been mapped by both approaches were mapped to the same arm of the same homologous chromosome, which indicated that using PCR-based ESTs was a reliable approach in mapping ESTs in hexaploid wheat.

EVOLUTION OF SUPPLY AND DEMAND OF WHEAT IN ROMANIA

Directory of Open Access Journals (Sweden)

Diana-Elena MARIN

2014-04-01

Full Text Available The paper aimed to present the evolution of supply demand and of wheat in Romanian market. It is based on the statistical data provided by National Institute of Statistics and European Statistics (Eurostat. The data have been processed into the following indicators: cultivated surfaces, obtained production, consumption per capita. Wheat production is correlated with seeding surface, but, sometimes paradoxes appear, where even if the cultivated surface is large the production is low. During the analyzed period, cultivated surfaces remained constantly; the production has continuously increased, so that in the year 2013 there are 7,383 million tonnes of wheat in Romania. As a conclusion, Romania is able to support domestic demand for wheat and can also export a significant amount of this grain.

Epidemiological link between wheat allergy and exposure to hydrolyzed wheat protein in facial soap.

Science.gov (United States)

Fukutomi, Y; Taniguchi, M; Nakamura, H; Akiyama, K

2014-10-01

Recent studies have highlighted the importance of extra-intestinal routes of sensitization to food-related allergens as the cause of epidemics of food allergy. Instances of Japanese women developing food allergy to wheat after exposure to hydrolyzed wheat protein (HWP) present in facial soap have been reported. However, the epidemiologic impact of these ingredients as a cause of food allergy has not been well studied. To clarify the epidemiological relationship between food allergy to wheat and contact exposure to HWP, a case-control study of Japanese women aged 20-54 years with self-reported wheat allergy (WA) (cases, n = 157) and age-matched control subjects without WA (controls, n = 449) was performed using a large-scale Web-based research panel. Subjects answered a Web-based questionnaire regarding the use of skin and hair care products, as well as other possible risk factors. Current use of an HWP-containing facial soap (Cha no Shizuku; Yuka) was significantly associated with an increased risk of WA (adjusted odds ratio, 2.6; 95% confidence interval, 1.2-5.7; frequencies of current use in cases and controls; 11% and 6%, respectively). Use of Cha no Shizuku was more common in subjects with more recent-onset WA, implying that this soap may have contributed to the recent epidemic of WA. An epidemiological relationship between WA and contact exposure to HWP has been documented. This study implicates a possible role of contact exposure to food-derived protein hydrolysates as a risk factor for the development of food allergy manifesting itself as anaphylaxis. © 2014 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Impact of Added Colored Wheat Bran on Bread Quality

OpenAIRE

Lenka Machálková; Marie Janečková; Luděk Hřivna; Yvona Dostálová; Joany Hernandez; Eva Mrkvicová; Tomáš Vyhnánek; Václav Trojan

2017-01-01

The impact of colored wheat bran addition on bread quality was tested on wheat varieties with purple pericarp (Konini, Rosso and Karkulka) and on a variety containing blue aleurone (Skorpion). The effect of 10 %, 15 % and 20 % bran addition on sensory evaluation, bread color and texture was compared to the characteristics of bread prepared from wheat variety Mulan. The addition of 10 % bran significantly increased the sensory evaluation scores of bread. Crumb characteristics were improved mai...

BRS 331 – Early cycle double-haploid wheat cultivar

Directory of Open Access Journals (Sweden)

Pedro Luiz Scheeren

2016-12-01

Full Text Available The wheat cultivar ‘BRS 331’ was developed by Embrapa. It results from an interspecific cross between wheat and maize by double-hapolid method. ‘BRS 331’ shows solid stem in the base of the plant, short leaves and super-early cycle to maturity. It is classified as bread wheat in all of the regions that is recommended in the States of Rio Grande do Sul, Paraná and Santa Catarina, Brazil.

77 FR 25375 - United States Standards for Wheat

Science.gov (United States)

2012-04-30

... and Stockyards Administration 7 CFR Part 810 RIN 0580-AB12 United States Standards for Wheat... 20.0 Wheat of other classes: \\2\\ Contrasting classes 1.0 2.0 3.0 10.0 10.0 Total \\3\\ 3.0 5.0 10.0 10...

Buckwheat-enriched wheat bread: National market placement possibilities

Directory of Open Access Journals (Sweden)

Sakač Marijana B.

2015-01-01

Full Text Available Quality parameters and the possibility of successful placement of buckwheat-enriched wheat bread on the national market are presented in this paper. Analysis of the market position of buckwheat-enriched wheat bread includes demands, offer and competition. Elements that affect the overall retail price of buckwheat-enriched wheat bread are given in details, along with SWOT analysis and marketing plan including target market, market supply and product marketing mix. According to all performed analyses it could be concluded that this product should be positioned on the national market, especially for people with special needs and requirements.

Main varieties of bread (Triticum aestivum L.) and durum (Triticum durum Desf.) wheat.

OpenAIRE

М. П. Чебаков

2008-01-01

Results of systematization and morphological characteristics of two wheat species-bread (Triticum aestivum L.) and hard (Triticum durum Desf.) are given. Detail descriptions of 55 main varieties of bread wheat and 32 varieties of hard wheat arep- resented in table version. In practical application these result enable plant breeders, seed producers and variety testers to determine wheat varieties easily sinse it is method for morphological systematics of wheat.

Main varieties of bread (Triticum aestivum L. and durum (Triticum durum Desf. wheat.

Directory of Open Access Journals (Sweden)

М. П. Чебаков

2008-04-01

Full Text Available Results of systematization and morphological characteristics of two wheat species-bread (Triticum aestivum L. and hard (Triticum durum Desf. are given. Detail descriptions of 55 main varieties of bread wheat and 32 varieties of hard wheat arep- resented in table version. In practical application these result enable plant breeders, seed producers and variety testers to determine wheat varieties easily sinse it is method for morphological systematics of wheat.

Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)

OpenAIRE

Stoffel, Kevin; Kozik, Alexander; Ashrafi, Hamid; Cui, Xinping; Tan, Xiaoping; Hill, Theresa; Reyes-Chin-Wo, Sebastian; Truco, Maria-Jose; Michelmore, Richard W; Van Deynze, Allen

2012-01-01

Abstract Background High-resolution genetic maps are needed in many crops to help characterize the genetic diversity that determines agriculturally important traits. Hybridization to microarrays to detect single feature polymorphisms is a powerful technique for marker discovery and genotyping because of its highly parallel nature. However, microarrays designed for gene expression analysis rarely provide sufficient gene coverage for optimal detection of nucleotide polymorphisms, which limits u...

Development and application of a 6.5 million feature affymetrix genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)

OpenAIRE

Stoffel, Kevin; van Leeuwen, Hans; Kozik, Alexander; Caldwell, David; Ashrafi, Hamid; Cui, Xinping; Tan, Xiaoping; Hill, Theresa; Reyes-Chin-Wo, Sebastian; Truco, Maria-Jose; Michelmore, Richard W; Van Deynze, Allen

2012-01-01

Abstract Background High-resolution genetic maps are needed in many crops to help characterize the genetic diversity that determines agriculturally important traits. Hybridization to microarrays to detect single feature polymorphisms is a powerful technique for marker discovery and genotyping because of its highly parallel nature. However, microarrays designed for gene expression analysis rarely provide sufficient gene coverage for optimal detection o...

Apparent Coefficient of Friction of Wheat on Denim.

Science.gov (United States)

Schwab, Charles V

2017-07-31

Calculation of the extraction force for a grain entrapment victim requires a coefficient of friction between the grain and the surface of the victim. Because denim is a common fabric for the work clothes that cover entrapment victims, the coefficient of friction between grain and denim becomes necessary. The purpose of this research was to calculate the apparent coefficient of friction of wheat on denim fabric using a proven procedure. The expectation is to improve the current understanding of conditions that influence extraction forces for victims buried in wheat. The apparent coefficient of friction of wheat on denim fabric was calculated to be 0.167 with a standard deviation of ±0.013. The wheat had a moisture content of 10.7% (w.b.) and bulk density of 778.5 kg m-3. The apparent coefficient of friction of wheat on denim was not significantly affected by pull speeds of 0.004, 0.008, and 0.021 mm s-1 nor normal grain pressures of 3.2, 4.8, 6.3, 7.9, and 11.1 kPa. This is a beginning of understanding the conditions that influence the extraction forces for grain entrapment victims. Copyright© by the American Society of Agricultural Engineers.

Fusarium spp. associated with head blight of wheat in South Africa

Science.gov (United States)

Fusarium head blight (FHB) of wheat is caused by numerous Fusarium species, including trichothecene-producers. In South Africa, FHB is mostly associated with irrigated wheat rotated with maize. Twenty symptomatic wheat heads were collected from four cultivars each in irrigated fields in the Northern...

Crop Nitrogen Uptake in A Legume-wheat Rotation Using1'5N Methodology

International Nuclear Information System (INIS)

Badarneh, D.

2005-01-01

Afield experiment was conducted to assess the impact of residual N from legume crops, fertilizer applied N, and fallow on the subsequent wheat production. The experiment was carried out in a randomized complex block design for the years 1993 and 1994. In 1993, barley was planted as a reference crop in legume plots. Micro plots, in both years were treated with 15 N. In 1994, whole plots were planted with wheat. In 1993, the yield of lentil treatments was not significantly different. The wheat yield, responded significantly to N addition. Lentil and chickpea derived 2/3 and 3/4 of their N needs from the atmosphere, respectively. In contrast, wheat derived most of its N needs(90%) from the soil. Water consumption was similar expect for wheat fertilized at low rate of N (179.5 mm). In 1994, wheat yields, the harvesting index and water consumption were not significantly different. Traditional harvesting of lentil and fertilizing wheat at a low rate reduced significantly the N% of wheat bio-mass. The % of N derived from fertilizer (Ndff) by wheat was much higher in 1994 (4.18 to 9.24%), but it was 3.62% for the fallow treatments. The % of N derived from soil (%Ndfs) by wheat 93% in 1994 for wheat planted after legume. The results indicated that legumes depleted soil N under the croping system currently adopted in Jordan, and the benefit of fallow to the subsequent wheat crop is attributed to the increase of soil organic N mineralization. (Author) 35 refs., 3 tabs., 2 figs

Allelopathy in agroecosystems: Wheat phytotoxicity and its possible roles in crop rotation.

Science.gov (United States)

Lodhi, M A; Bilal, R; Malik, K A

1987-08-01

The germination rates of cotton and wheat seeds were significantly affected by various extracts of wheat mulch and soils collected from the wheat field. This toxicity was even more pronounced against seedling growth. Five allelochemics: ferulic,p-coumaric,p-OH benzoic, syringic, and vanillic acids, were identified from the wheat mulch and its associated soil. Quantitatively, ferulic acid was found at higher concentrations thanp-coumaric acid in the soil. Various concentrations of ferulic andp-coumaric acids were toxic to the growth of radish in a bioassay. The functional aspects of allelochemic transfer from decaying residue to soil and the subsequent microbial degradation within agroecosystems are discussed, particularly as they relate to wheat crop rotation, with wheat and cotton, in Pakistan.

Augmenting the salt tolerance in wheat ( Triticum aestivum ) through ...

African Journals Online (AJOL)

Augmenting the salt tolerance in wheat ( Triticum aestivum ) through exogenously applied silicon. ... African Journal of Biotechnology ... physiology and biochemistry of wheat genotypes (salt sensitive; Auqab-2000 and salt tolerant; SARC-5) ...

Improving wheat simulation capabilities in Australia from a cropping systems perspective. III. The integrated wheat model (I-WHEAT).

NARCIS (Netherlands)

Meinke, H.; Hammer, G.L.; Keulen, van H.; Rabbinge, R.

1998-01-01

Previous work has identified several short-comings in the ability of four spring wheat and one barley model to simulate crop processes and resource utilization. This can have important implications when such models are used within systems models where final soil water and nitrogen conditions of one

Dynamics of DNA replication during premeiosis and early meiosis in wheat.

Science.gov (United States)

Rey, María-Dolores; Prieto, Pilar

2014-01-01

Meiosis is a specialised cell division that involves chromosome replication, two rounds of chromosome segregation and results in the formation of the gametes. Meiotic DNA replication generally precedes chromosome pairing, recombination and synapsis in sexually developing eukaryotes. In this work, replication has been studied during premeiosis and early meiosis in wheat using flow cytometry, which has allowed the quantification of the amount of DNA in wheat anther in each phase of the cell cycle during premeiosis and each stage of early meiosis. Flow cytometry has been revealed as a suitable and user-friendly tool to detect and quantify DNA replication during early meiosis in wheat. Chromosome replication was detected in wheat during premeiosis and early meiosis until the stage of pachytene, when chromosomes are associated in pairs to further recombine and correctly segregate in the gametes. In addition, the effect of the Ph1 locus, which controls chromosome pairing and affects replication in wheat, was also studied by flow cytometry. Here we showed that the Ph1 locus plays an important role on the length of meiotic DNA replication in wheat, particularly affecting the rate of replication during early meiosis in wheat.

Rust fungi on some poaceous weeds of wheat crops in Pakistan

OpenAIRE

NAJAM-UL-SEHAR AFSHAN*; ABDUL REHMAN NIAZI

2013-01-01

The article enlists common poaceous weeds found in wheat crop sand their specific parasitic rust fungi. In this study, four (04) plant taxa of Poaceae infected with rust fungi are collected from different wheat crops grown in different areas of Pakistan. The rust fungi are isolated, characterized and identified. All these host plants are known weeds of wheat crop in Pakistan. This work would help to identify and enlist the potential rust fungi on weeds of wheat crop that could be utilized to ...

Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat.

KAUST Repository

Leach, Lindsey J

2014-04-11

BACKGROUND: Bread wheat (Triticum aestivum) has a large, complex and hexaploid genome consisting of A, B and D homoeologous chromosome sets. Therefore each wheat gene potentially exists as a trio of A, B and D homoeoloci, each of which may contribute differentially to wheat phenotypes. We describe a novel approach combining wheat cytogenetic resources (chromosome substitution \\'nullisomic-tetrasomic\\' lines) with next generation deep sequencing of gene transcripts (RNA-Seq), to directly and accurately identify homoeologue-specific single nucleotide variants and quantify the relative contribution of individual homoeoloci to gene expression. RESULTS: We discover, based on a sample comprising ~5-10% of the total wheat gene content, that at least 45% of wheat genes are expressed from all three distinct homoeoloci. Most of these genes show strikingly biased expression patterns in which expression is dominated by a single homoeolocus. The remaining ~55% of wheat genes are expressed from either one or two homoeoloci only, through a combination of extensive transcriptional silencing and homoeolocus loss. CONCLUSIONS: We conclude that wheat is tending towards functional diploidy, through a variety of mechanisms causing single homoeoloci to become the predominant source of gene transcripts. This discovery has profound consequences for wheat breeding and our understanding of wheat evolution.

Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat.

KAUST Repository

Leach, Lindsey J; Belfield, Eric J; Jiang, Caifu; Brown, Carly; Mithani, Aziz; Harberd, Nicholas P

2014-01-01

BACKGROUND: Bread wheat (Triticum aestivum) has a large, complex and hexaploid genome consisting of A, B and D homoeologous chromosome sets. Therefore each wheat gene potentially exists as a trio of A, B and D homoeoloci, each of which may contribute differentially to wheat phenotypes. We describe a novel approach combining wheat cytogenetic resources (chromosome substitution 'nullisomic-tetrasomic' lines) with next generation deep sequencing of gene transcripts (RNA-Seq), to directly and accurately identify homoeologue-specific single nucleotide variants and quantify the relative contribution of individual homoeoloci to gene expression. RESULTS: We discover, based on a sample comprising ~5-10% of the total wheat gene content, that at least 45% of wheat genes are expressed from all three distinct homoeoloci. Most of these genes show strikingly biased expression patterns in which expression is dominated by a single homoeolocus. The remaining ~55% of wheat genes are expressed from either one or two homoeoloci only, through a combination of extensive transcriptional silencing and homoeolocus loss. CONCLUSIONS: We conclude that wheat is tending towards functional diploidy, through a variety of mechanisms causing single homoeoloci to become the predominant source of gene transcripts. This discovery has profound consequences for wheat breeding and our understanding of wheat evolution.

Mycoflora study in a wheat flour mill of Argentina

Science.gov (United States)

Aringoli, E.E.; Cambiagno, D.E.; Chiericatti, C.A.; Basilico, J.C.; Basilico, M.L.Z.

2012-01-01

The mycoflora of the environment: wheat conditioning, milling and screening, and filling zone, as well as, raw material -wheat-, intermediate product -grits- and end product -flour- on day 1, and after cleaning improvements -days 45 and 90- were studied in an Argentine wheat mill. Samples were incubated at 28°C for 5–7 days on Malt Extract Agar with chloramphenicol (100 mg L-1) and the results were expressed in colony forming units per cubic meter of air (CFU m-3) or per gram of sample (CFU g-1), respectively. Fungal genera and species were isolated and identified and the potential toxicogenic capacity of the Aspergillus flavus and Fusarium graminearum isolated was studied. Time-Place and Time-Product multifactorial ANOVA were carried out. After cleaning improvements, CFU m-3 of air decreased as a function of time. Cladosporium and Alternaria were abundant in every zone, Aspergillus predominated in the wheat conditioning zone and Penicillium and Eurotium decreased with time. Wheat was more contaminated than grits and flour; Aspergillus, Eurotium and Mucoraceae family were the most abundant. Deoxynivalenol was above the levels allowed in wheat, being acceptable in grits and flour. Aflatoxin and Zearalenone showed acceptable levels. When studied in vitro, 53% of Aspergillus flavus and 100% of Fusarium graminearum isolates, produced Total Aflatoxins, and Deoxynivalenol and Zearalenone, respectively. PMID:24031975

Mycoflora study in a wheat flour mill of Argentina

Directory of Open Access Journals (Sweden)

E.E. Aringoli

2012-12-01

Full Text Available The mycoflora of the environment: wheat conditioning, milling and screening, and filling zone, as well as, raw material -wheat-, intermediate product -grits- and end product -flour- on day 1, and after cleaning improvements -days 45 and 90- were studied in an Argentine wheat mill. Samples were incubated at 28°C for 5-7 days on Malt Extract Agar with chloramphenicol (100 mg L-1 and the results were expressed in colony forming units per cubic meter of air (CFU m-3 or per gram of sample (CFU g-1, respectively. Fungal genera and species were isolated and identified and the potential toxicogenic capacity of the Aspergillus flavus and Fusarium graminearum isolated was studied. Time-Place and Time-Product multifactorial ANOVA were carried out. After cleaning improvements, CFU m-3 of air decreased as a function of time. Cladosporium and Alternaria were abundant in every zone, Aspergillus predominated in the wheat conditioning zone and Penicillium and Eurotium decreased with time. Wheat was more contaminated than grits and flour; Aspergillus, Eurotium and Mucoraceae family were the most abundant. Deoxynivalenol was above the levels allowed in wheat, being acceptable in grits and flour. Aflatoxin and Zearalenone showed acceptable levels. When studied in vitro, 53% of Aspergillus flavus and 100% of Fusarium graminearum isolates, produced Total Aflatoxins, and Deoxynivalenol and Zearalenone, respectively.

Factors affecting wheat nutritional value for broiler chickens

NARCIS (Netherlands)

Gutierrez del Alamo Oms, A.

2009-01-01

In Europe, broiler chickens are fed with balanced diets where the energy is mainly supplied by wheat. The feed industry considers wheat a moderately uniform raw material and therefore its energy content and nutrient digestibility are taken from feeding tables (tabulated values) and assigned to all

Genotype-dependent responses of wheat ( Triticum aestivum L ...

African Journals Online (AJOL)

Experiments were conducted under controlled conditions to investigate the growth and physiological - biochemical responses of wheat (Triticum aestivum L.) seedlings to UV-B, drought, and their combined stresses. Both UV-B and drought treatments retarded seedling growth with UV-B having worse impact on wheat plants ...

Population densities of wheat thrips, Haplothrips tritici Kurdjumov ...

African Journals Online (AJOL)

Jane

2011-07-18

Jul 18, 2011 ... Key words: Thysanoptera, Haplothrips tritici, population density, bread wheat, durum wheat, barley, cultivars. INTRODUCTION. Some thrips types of the order Thysanoptera constitute one of the harmful groups found on grains (Minaei and. Mound, 2008). The most common species observed on grains in ...

Meiotic behaviour of tetraploid wheats (Triticum turgidum L.)

Indian Academy of Sciences (India)

Meiotic behaviour of plant chromosomes is influenced by both genetic and environmental factors. In this study, the meiotic behaviour of cereal crops was investigated, which includes tetraploid wheat genotypes (with and without the meiotic restitution trait) and their derivates (synthetic hexaploid wheats and a doubled ...

Effect of Different Levels of Sodium Chloride on Germination Characteristics of 20 Cultivars of Bread and Durum Wheat20 Cultivars of Bread and Durum Wheat

Directory of Open Access Journals (Sweden)

E Bijanzadeh

2011-01-01

Full Text Available Abstract Salt stress is a major stress influencing wheat seedling establishment. A laboratory experiment was conducted to evaluate the response of 20 cultivars of wheat to two levels of salinity (8 and 16 dS/m NaCl, at the College of Agriculture, Shiraz University, Shiraz, Iran in 2008. Maximum root length was obtained in Dabira (5.73 mm at 16dS/m salinity level. In control, durum wheat cultivars including D81-17, Yavaros, D82-16, D79-15 and Taro3 had the maximum root length compared to bread wheat, however, with increasing salinity level to 16dS/m, minimum root length was observed in D82-16 (0.3 mm. In all cultivars, with increasing salinity level, shoot length was decreased and minimum shoot length was observed in D82-16 and D79-15. Under control conditions, Taro 3 cultivar had maximum seedling dry weight (108.6 mm, however, at 8 and 16 dS/m salinity levels, seedling dry weight of this cultivar was decreased to 92.33 and 78.43 mg, respectively. All seeds (100% were germinated in D82-16, Taro3, Bolani Cross, and Chamran cultivars under 16 dS/m but in Marvdasht cultivar, seed germination percentage under 8 and 16 dS/m reached to 65 and 50%, respectively. Shiraz (10.8 seeds/day, Adl Cross(10 seeds/day, and Bolani Cross (9.1 seeds/day had maximum germination rate under 16 dS/m salinity level. Differences among wheat cultivars also found in germination stress index (germination rate under stress divided by germination rate under control and Shiraz, Adl Cross and Bolani Cross had maximum germination stress index, while Yavaros and D82-16 had minimum germination stress index. Furthermore, with increasing salinity level, different responses were observed among wheat cultivars in root and shoot length, germination rate and germination stress index which demonstrated the genetic diversity among wheat cultivars. It appeared that durum wheat cultivars, compared to bread wheat cultivars, had lower germination stress index and germination rate. Among what

Molecular characterization of genetic diversity in some durum wheat ...

African Journals Online (AJOL)

Molecular characterization of genetic diversity in some durum wheat ... African Journal of Biotechnology ... Thus, RAPD offer a potentially simple, rapid and reliable method to evaluate genetic variation and relatedness among ten wheat ...

Burns From Hot Wheat Bags: A Public Safety Issue

Science.gov (United States)

Collins, Anna; Amprayil, Mathew; Solanki, Nicholas S.; Greenwood, John Edward

2011-01-01

Introduction: Wheat bags are therapeutic devices that are heated in microwaves and commonly used to provide relief from muscle and joint pain. The Royal Adelaide Hospital Burns Unit has observed a number of patients with significant burn injuries resulting from their use. Despite their dangers, the products come with limited safety information. Methods: Data were collected from the Burns Unit database for all patients admitted with burns due to hot wheat bags from 2004 to 2009. This was analyzed to determine the severity of the burn injury and identify any predisposing factors. An experimental study was performed to measure the temperature of wheat bags when heated to determine their potential for causing thermal injury. Results: 11 patients were admitted with burns due to hot wheat bags. The median age was 52 years and the mean total body surface area was 1.1%. All burns were either deep dermal (45.5%) or full thickness (54.5%). Ten patients required operative management. Predisposing factors (eg, neuropathy) to thermal injury were identified in 7 patients. The experimental study showed that hot wheat bags reached temperatures of 57.3°C (135.1°F) when heated according to instructions, 63.3°C (145.9°F) in a 1000 W microwave and 69.6°C (157.3°F) on reheating. Conclusions: Hot wheat bags cause serious burn injury. When heated improperly, they can reach temperatures high enough to cause epidermal necrosis in a short period of time. Patients with impaired temperature sensation are particularly at risk. There should be greater public awareness of the dangers of wheat bag use and more specific safety warnings on the products. PMID:21915357

Improving farming practices reduces the carbon footprint of spring wheat production.

Science.gov (United States)

Gan, Yantai; Liang, Chang; Chai, Qiang; Lemke, Reynald L; Campbell, Con A; Zentner, Robert P

2014-11-18

Wheat is one of the world's most favoured food sources, reaching millions of people on a daily basis. However, its production has climatic consequences. Fuel, inorganic fertilizers and pesticides used in wheat production emit greenhouse gases that can contribute negatively to climate change. It is unknown whether adopting alternative farming practices will increase crop yield while reducing carbon emissions. Here we quantify the carbon footprint of alternative wheat production systems suited to semiarid environments. We find that integrating improved farming practices (that is, fertilizing crops based on soil tests, reducing summerfallow frequencies and rotating cereals with grain legumes) lowers wheat carbon footprint effectively, averaging -256 kg CO2 eq ha(-1) per year. For each kg of wheat grain produced, a net 0.027-0.377 kg CO2 eq is sequestered into the soil. With the suite of improved farming practices, wheat takes up more CO2 from the atmosphere than is actually emitted during its production.

In search of tetraploid wheat accessions reduced in celiac disease-related gluten epitopes

NARCIS (Netherlands)

Broeck, van den H.C.; Hongbing, C.; Lacaze, X.; Dusautoir, J.C.; Gilissen, L.J.W.J.; Smulders, J.M.; Meer, van der I.M.

2010-01-01

Tetraploid wheat (durum wheat) is mainly used for the preparation of pasta. As a result of breeding, thousands of tetraploid wheat varieties exist, but also tetraploid landraces are still maintained and used for local food preparations. Gluten proteins present in wheat can induce celiac disease, a

Effects of diurnal temperature range and drought on wheat yield in Spain

Science.gov (United States)

Hernandez-Barrera, S.; Rodriguez-Puebla, C.; Challinor, A. J.

2017-07-01

This study aims to provide new insight on the wheat yield historical response to climate processes throughout Spain by using statistical methods. Our data includes observed wheat yield, pseudo-observations E-OBS for the period 1979 to 2014, and outputs of general circulation models in phase 5 of the Coupled Models Inter-comparison Project (CMIP5) for the period 1901 to 2099. In investigating the relationship between climate and wheat variability, we have applied the approach known as the partial least-square regression, which captures the relevant climate drivers accounting for variations in wheat yield. We found that drought occurring in autumn and spring and the diurnal range of temperature experienced during the winter are major processes to characterize the wheat yield variability in Spain. These observable climate processes are used for an empirical model that is utilized in assessing the wheat yield trends in Spain under different climate conditions. To isolate the trend within the wheat time series, we implemented the adaptive approach known as Ensemble Empirical Mode Decomposition. Wheat yields in the twenty-first century are experiencing a downward trend that we claim is a consequence of widespread drought over the Iberian Peninsula and an increase in the diurnal range of temperature. These results are important to inform about the wheat vulnerability in this region to coming changes and to develop adaptation strategies.

Climate Change Impact on Rainfall: How will Threaten Wheat Yield?

Science.gov (United States)

Tafoughalti, K.; El Faleh, E. M.; Moujahid, Y.; Ouargaga, F.

2018-05-01

Climate change has a significant impact on the environmental condition of the agricultural region. Meknes has an agrarian economy and wheat production is of paramount importance. As most arable area are under rainfed system, Meknes is one of the sensitive regions to rainfall variability and consequently to climate change. Therefore, the use of changes in rainfall is vital for detecting the influence of climate system on agricultural productivity. This article identifies rainfall temporal variability and its impact on wheat yields. We used monthly rainfall records for three decades and wheat yields records of fifteen years. Rainfall variability is assessed utilizing the precipitation concentration index and the variation coefficient. The association between wheat yields and cumulative rainfall amounts of different scales was calculated based on a regression model. The analysis shown moderate seasonal and irregular annual rainfall distribution. Yields fluctuated from 210 to 4500 Kg/ha with 52% of coefficient of variation. The correlation results shows that wheat yields are strongly correlated with rainfall of the period January to March. This investigation concluded that climate change is altering wheat yield and it is crucial to adept the necessary adaptation to challenge the risk.

Rejecting New Technology: The Case of Genetically Modified Wheat

OpenAIRE

Derek Berwald; Colin A. Carter; Guillaume P. Gruère

2006-01-01

Canada has stringent regulations covering the release of new wheat varieties, but the United States has virtually no regulations in this area. Monsanto Co. developed genetically modified (GM) spring wheat for North America, and made a commitment to the U.S. industry to release this new technology simultaneously in both Canada and the United States, or not at all. The Canadian regulatory bias against new varieties acted as a veto against GM wheat and caused Monsanto to shelve the technology in...

Substituting Normal and Waxy-Type Whole Wheat Flour on Dough and Baking Properties

Science.gov (United States)

Choi, Induck; Kang, Chun-Sik; Cheong, Young-Keun; Hyun, Jong-Nae; Kim, Kee-Jong

2012-01-01

Normal (cv. Keumkang, KK) and waxy-type (cv. Shinmichal, SMC) whole wheat flour was substituted at 20 and 40% for white wheat flour (WF) during bread dough formulation. The flour blends were subjected to dough and baking property measurement in terms of particle size distribution, dough mixing, bread loaf volume and crumb firmness. The particle size of white wheat flour was the finest, with increasing coarseness as the level of whole wheat flour increased. Substitution of whole wheat flour decreased pasting viscosity, showing all RVA parameters were the lowest in SMC40 composite flour. Water absorption was slightly higher with 40% whole wheat flour regardless of whether the wheat was normal or waxy. An increased mixing time was observed when higher levels of KK flour were substituted, but the opposite reaction occurred when SMC flour was substituted at the same levels. Bread loaf volume was lower in breads containing a whole wheat flour substitution compared to bread containing only white wheat flour. No significant difference in bread loaf volume was observed between normal and waxy whole flour, but the bread crumb firmness was significantly lower in breads containing waxy flour. The results of these studies indicate that up to 40% whole wheat flour substitution could be considered a practical option with respect to functional qualities. Also, replacing waxy whole flour has a positive effect on bread formulation over normal whole wheat flour in terms of improving softness and glutinous texture. PMID:24471084

Efficient induction of Wheat-agropyron cristatum 6P translocation lines and GISH detection.

Directory of Open Access Journals (Sweden)

Liqiang Song

Full Text Available The narrow genetic background restricts wheat yield and quality improvement. The wild relatives of wheat are the huge gene pools for wheat improvement and can broaden its genetic basis. Production of wheat-alien translocation lines can transfer alien genes to wheat. So it is important to develop an efficient method to induce wheat-alien chromosome translocation. Agropyroncristatum (P genome carries many potential genes beneficial to disease resistance, stress tolerance and high yield. Chromosome 6P possesses the desirable genes exhibiting good agronomic traits, such as high grain number per spike, powdery mildew resistance and stress tolerance. In this study, the wheat-A. cristatum disomic addition was used as bridge material to produce wheat-A. cristatum translocation lines induced by (60Co-γirradiation. The results of genomic in situ hybridization showed that 216 plants contained alien chromosome translocation among 571 self-pollinated progenies. The frequency of translocation was 37.83%, much higher than previous reports. Moreover, various alien translocation types were identified. The analysis of M2 showed that 62.5% of intergeneric translocation lines grew normally without losing the translocated chromosomes. The paper reported a high efficient technical method for inducing alien translocation between wheat and Agropyroncristatum. Additionally, these translocation lines will be valuable for not only basic research on genetic balance, interaction and expression of different chromosome segments of wheat and alien species, but also wheat breeding programs to utilize superior agronomic traits and good compensation effect from alien chromosomes.

Dissipation and residue of bifenthrin in wheat under field conditions.

Science.gov (United States)

You, Xiangwei; Jiang, Naiwen; Liu, Fengmao; Liu, Congyun; Wang, Suli

2013-02-01

Field trials were carried out to investigate the dissipation and residue levels of bifenthrin in wheat. After extraction with acetonitrile, the samples were cleaned up by dispersive solid-phase extraction and detected by gas chromatography-mass spectrometry. The half-lives of bifenthrin in wheat seedlings ranged from 2.4 to 10.5 days. At harvest time, the terminal residues of bifenthrin were below the maximum residue limit (0.5 mg/kg) set by Codex Alimentarius Committee or European Union in wheat grain, which suggested that the use of this pesticide was safe for humans. However, the relatively high residue levels of bifenthrin in wheat straw should be paid attention to.

PREDICTION OF WHITE FLOUR QUALITY OBTAINED BY INDUSTRIAL MILLING OF WHEAT

Directory of Open Access Journals (Sweden)

IULIANA APRODU

2014-08-01

Full Text Available In order to establish the relations between quality of the wheat and white flour obtained through industrial milling, several parameters related to functional properties of the proteins and starch were analyzed. The parameters defining the proteins functionality are wet gluten, Gluten index, deformation energy of dough and minimum torque C2 and allowed establishing significant correlations between wheat and flour. Concerning the starch baking performance, the parameters that allowed establishing significant correlations between wheat and flour are falling number value, amylase activity, starch gelatinization and cooking stability range. Analyzing the trend of variation of the quality parameters given by Mixolab and Alveograph tests for wheat and flour, one can see that it is possible to predict the flour quality based on wheat quality.

Wheat and barley differently affect porcine intestinal microbiota

DEFF Research Database (Denmark)

Weiss, Eva; Aumiller, Tobias; Spindler, Hanns K

2016-01-01

Diet influences the porcine intestinal microbial ecosystem. Barrows were fitted with ileal T-cannulas to compare short-term effects of eight different wheat or barley genotypes and period-to-period effects on seven bacterial groups in ileal digesta and faeces by qPCR. Within genotypes of wheat an...

Potassium efficiency of wheat and sugar beet evaluated under field conditions

International Nuclear Information System (INIS)

El Dessougi, H. I.; Claassen, N.; Steingrobe, B.

2011-01-01

This study was conducted to investigate the potassium (K) efficiency of wheat and sugar beet under field conditions and to identify the varying mechanisms or factors behind their efficiency. Data were obtained from a long term fertilizer experiment, on a K (fixing) sandy clay loam in Bavaria, southern Germany, in which K fertilization rates varied from 0 to 1000 kg K ha - 1 year - 1 with the last K application in 1986. In 2003, sugar beet and spring wheat were sown on March 13 t h and April 4 t h respectively. At 4 and 5 harvests for wheat and sugar beet, respectively, random samples of shoots, roots and soil of each species from the unfertilized (-K) and the highest fertilizer level of 1000 kg K ha - 1 (+K) treatments were analyzed. Sugar beet and wheat had similar K efficiency producing 76% and 80% beet and grain yield on unfertilized compared with fertilized treatments, respectively. As compared to wheat, sugar beet had a higher internal K requirement, two times higher shoots growth rate (GRs), 34% to 48% of the wheat root length (RL), and consequently a larger GR/RL, that is higher demand for K uptake on the roots. However, sugar beet showed an exceptionally high uptake efficiency of the single roots or influx, which was 5 times higher in unfertilized treatments, as compared with wheat. Wheat K efficiency was attributed to a higher utilization efficiency or lower internal requirement, slow growing shoots and a large root system. Further investigations are necessary to study the mechanism by which sugar beet was able to achieve a higher influx than wheat.(Author)

Integrated use of biochar: a tool for improving soil and wheat quality of degraded soil under wheat-maize cropping pattern

International Nuclear Information System (INIS)

Ali, K.; Arif, M.; Jan, M.T.

2015-01-01

Wheat quality, nutrient uptake and nutrient use efficiency are significantly influenced by nutrient sources and application rate. To investigate the integrative effect of biochar, farmyard manure (FYM) and nitrogen (organic and inorganic soil amendments) in a wheat-maize cropping system, a two year study was designed to assess the interactive outcome of biochar, FYM and nitrogenous fertilizer on wheat nitrogen (N) parameters and associated soil quality parameters. Three levels of biochar (0, 25 and 50 t ha-1), two levels of FYM (5 and 10 t ha-1) and two levels of nitrogen fertilizer (60 and 120 kg ha-1) were used in the study. Biochar application displayed a significantly increased in wheat leaf, stem, straw and grain N content; grain and total N-uptake and grain protein content by 24, 20, 24, 56, 50, 17 and 20% respectively. Similarly, biochar application significantly increased soil total N (TN) and soil mineral N (SMN) by 63 and 40% respectively in second year. FYM application increased grain, leaf and straw N content by 20, 19.5 and 18% respectively, and increased total N-uptake and grain protein content by 49 and 19% respectively. FYM increased soil TN and SMN by 63 and 32% in both the years of the experiment. Mineral N application increased soil TN by over a half and SMN by a third, and grain protein content increased 16%. In contrast, nitrogen use efficiency (NUE) decreased for all amendments relative to the control. However, biochar treated plots improved NUE by 38% compared to plots without biochar. In conclusion, this field experiment has illustrated the potential of biochar to bring about short-term benefits in wheat and soil quality parameters in wheat-maize cropping systems. However, the long-term benefits remain to be quantified. (author)

Genetic variation of gliadin composition of wheat varieties in shanxi

International Nuclear Information System (INIS)

Sun Daizhen; Wang Shuguang; Yang Wude; Cao Yaping; Yang Haifeng

2009-01-01

In order to discover genetic variation of gliadin composition of wheat varieties in Shanxi, A-PAGE method was used to analyze difference of gliadin composition and genetic diversity of 214 varieties including local bred, introduced and landraces wheat in recent 40 years. The results were as follows: number of gliadin band increased by 2.1 and 1.5 in bred and introduced wheat varieties compared to Shanxi landraces. In total 70 bands,the frequency of 26 bands detected from bred and introduced cultivars was up, 23 down, 21 no regular pattern compared to Shanxi landraces. In 4 gliadin zones, variation of types and frequency of gliadin band in ω zone was largest, γ was the second, β and α was smallest. Two band block of 16.5 and 19.1, and three band block of 12.9, 15.7 and 17.8 were tested in ω zone, but they do not express in the same variety. Mean of genetic distance in Shanxi wheat landraces was larger than those in other two type wheat cultivars. The cluster analysis found that cultivars of landraces, bred or introduced were divided into the same group, which showed genetic difference of loci encoded gliadin in Shanxi wheat landraces was larger than the other two type wheat cultivars, namely, the level of genetic variation of gliadin in bred or introduced cultivars was not high in the last 40 years. (authors)

Can Growing Degree Days and Photoperiod Predict Spring Wheat Phenology?

Directory of Open Access Journals (Sweden)

Muhammad A. Aslam

2017-09-01

Full Text Available Wheat (Triticum aestivum production in the rainfed area of Pothwar Pakistan is extremely vulnerable to high temperature. The expected increase in temperature due to global warming should result in shorter crop life cycles, and thus lower biomass and grain yield. Two major factors control wheat phenological development: temperature and photoperiod. To evaluate wheat development in response to these factors, we conducted experiments that created diverse temperature and daylength conditions by adjusting the crop sowing time. The study was conducted during 2013–14 and 2014–15 using five spring wheat genotypes, four sowing times, at three sites under rainfed management in Pothwar, Pakistan. Wheat crops experienced more cold days with early sowing, but later sowing dates resulted in higher temperatures, especially from anthesis to maturity. These treatments produced large differences in phenology, biomass production, and yield. To investigate whether growing degree days (GDD and photoperiod algorithms could predict wheat phenology under these changing conditions, GDD was calculated based on the method proposed by Wang and Engel while photoperiod followed the approach introduced in the APSIM crop growth model. GDD was calculated separately and in combination with photoperiod from germination to anthesis. For the grain filling period, only GDD was calculated. The observed and predicted number of days to anthesis and maturity were in good agreement, showing that the combination of GDD and photoperiod algorithms provided good estimations of spring wheat phenology under variable temperature and daylength conditions.

Effect of partial replacement of wheat with peanut flour on the ...

African Journals Online (AJOL)

Background: Consumption of bread is continually growing despite the high cost of wheat importation. There is a dire need to reduce the dependence on wheat through partial replacement of wheat with indigenous crops as well as improving the nutritional value of carbohydrate based foods. Objectives: The objectives of this ...

Occurrence of ochratoxin A in Danish wheat and rye, 1992-99

DEFF Research Database (Denmark)

Jørgensen, Kevin; Jacobsen, J.S.

2002-01-01

Ochratoxin A concentrations in rye and wheat in Denmark for 1992-99 are reported. The results show that the concentration of ochratoxin A is higher in rye than in wheat for both conventionally and organically grown rye and wheat. The levels in organically grown rye are higher than in conventionally...

Plasma-Assisted Pretreatment of Wheat Straw

DEFF Research Database (Denmark)

Schultz-Jensen, Nadja; Leipold, Frank; Bindslev, Henrik

2011-01-01

O3 generated in a plasma at atmospheric pressure and room temperature, fed with dried air (or oxygen-enriched dried air), has been used for the degradation of lignin in wheat straw to optimize the enzymatic hydrolysis and to get more fermentable sugars. A fixed bed reactor was used combined...... with a CO2 detector and an online technique for O3 measurement in the fed and exhaust gas allowing continuous measurement of the consumption of O3. This rendered it possible for us to determine the progress of the pretreatment in real time (online analysis). The process time can be adjusted to produce wheat...... straw with desired lignin content because of the online analysis. The O3 consumption of wheat straw and its polymeric components, i.e., cellulose, hemicellulose, and lignin, as well as a mixture of these, dry as well as with 50% water, were studied. Furthermore, the process parameters dry matter content...

Biodegradability of wheat gluten based bioplastics.

Science.gov (United States)

Domenek, Sandra; Feuilloley, Pierre; Gratraud, Jean; Morel, Marie-Hélène; Guilbert, Stéphane

2004-01-01

A large variety of wheat gluten based bioplastics, which were plasticized with glycerol, were subjected to biodegradation. The materials covered the total range available for the biochemical control parameter Fi, which expresses the percentage of aggregated proteins. This quantity can be related to the density of covalent crosslinks in the wheat gluten network, which are induced by technological treatments. The biodegradability tests were performed in liquid medium (modified Sturm test) and in farmland soil. All gluten materials were fully degraded after 36 days in aerobic fermentation and within 50 days in farmland soil. No significant differences were observed between the samples. The mineralization half-life time of 3.8 days in the modified Sturm test situated gluten materials among fast degrading polymers. The tests of microbial inhibition experiments revealed no toxic effects of the modified gluten or of its metabolites. Thus, the protein bulk of wheat gluten materials is non-toxic and fully biodegradable, whatever the technological process applied.

Quality of synthetic hexaploid wheat containing null alleles at Glu-A1

Indian Academy of Sciences (India)

GSs. However, incorporation of HMW-GS from Ae. tauschii in six synthetic hexaploid wheat lines significantly increased most quality related parameters. The potential values of these wheat lines in improving the quality of wheat are discussed.

Population densities of wheat thrips, Haplothrips tritici Kurdjumov ...

African Journals Online (AJOL)

Population densities of Haplothrips tritici (H. tritici) Kurdjumov (Thysanoptera: Phlaeothripidae) were studied in Kahramanmaras, Turkey. In 2002, bread wheat cultivars, Bocro 4, Pehlivan and Yüreğir 89, durum wheat cultivars, Balcali 85, Ceylan 95 and Harran 95 and barley cultivars, Esterel and Pacific, were used. In 2003 ...

Overexpression of TiERF1 enhances resistance to sharp eyespot in transgenic wheat

OpenAIRE

Chen, Liang; Zhang, ZengYan; Liang, HongXia; Liu, HongXia; Du, LiPu; Xu, Huijun; Xin, Zhiyong

2008-01-01

Wheat sharp eyespot, primarily caused by a soil-borne fungus Rhizoctonia cerealis, has become one of the most serious diseases of wheat in China. In this study, an ethylene response factor (ERF) gene from a wheat relative Thinopyrum intermedium, TiERF1, was characterized further, transgenic wheat lines expressing TiERF1 were developed, and the resistance of the transgenic wheat lines against R. cerealis was investigated. Southern blotting analysis indicated that at least two copies of the TiE...

Mutation induction in durum wheat

International Nuclear Information System (INIS)

Senay, A.; Sekerci, S.

2009-01-01

The aim of this research was to determine the separate and combine effects of different doses of gamma rays and EMS concentrations on some characteristics of M1 plants of durum wheat, cv. Kunduru 1149. The seeds of durum wheat, cv. Kunduru 1149 which were irradiated with 50 Gy, 150 Gy and 250 Gy gamma rays and/or treated EMS for 6 hours at 30 C in 0,2 % and 0,4 % concentrated. According to the results of this research; separate and combine treatments of different doses of gamma rays and EMS have shown significant difference all of the observed traits at M1 plants of durum wheat cv. Kunduru 1149. The negative effects of increasing doses of mutagens on all plant characteristics for M1 plants were found statistically significant. Combined treatments were found to be more efficient than the sum of effects of the single treatments. In followed generation 3 mutant lines were selected according to plant height, spike height, number of seed, leaf relative water lost, and some quality traits. In M6 generation 3 desirable lines have been sown for preliminary field yield tests.

Characterization of stem rust resistance gene Sr2 in Indian wheat ...

African Journals Online (AJOL)

Stem rust or black rust is one of the most important diseases of wheat worldwide. In India, central, peninsular and southern hill zones are particularly prone to stem rust where favourable environmental conditions exist. The recent emergence of wheat stem rust race Ug99 (TTKSK) and related strains threatens global wheat ...

Assessing climate change impacts on wheat production (a case study

Directory of Open Access Journals (Sweden)

J. Valizadeh

2014-06-01

Full Text Available Climate change is one of the major challenges facing humanity in the future and effect of climate change has been detrimental to agricultural industry. The aim of this study was to simulate the effects of climate change on the maturity period, leaf area index (LAI, biomass and grain yield of wheat under future climate change for the Sistan and Baluchestan region in Iran. For this purpose, two general circulation models HadCM3 and IPCM4 under three scenarios A1B, B1 and A2 in three time periods 2020, 2050 and 2080 were used. LARS-WG model was used for simulating climatic parameters for each period and CERES-Wheat model was used to simulate wheat growth. The results of model evaluation showed that LARS-WG had appropriate prediction for climatic parameters and simulation of stochastic growing season in future climate change conditions for the studied region. Wheat growing season period in all scenarios of climate change was reduced compared to the current situation. Possible reasons were the increase in temperature rate and the accelerated growth stages of wheat. This reduction in B1 scenario was less than A1B and A2 scenarios. Maximum wheat LAI in all scenarios, except scenario A1B in 2050, is decreased compared to the current situation. Yield and biological yield of wheat in both general circulation models under all scenarios and all times were reduced in comparison with current conditions and the lowest reduction was related to B1 scenario. In general, the results showed that wheat production in the future will be affected by climate change and will decrease in the studied region. To reduce these risks, the impact of climate change mitigation strategies and management systems for crop adaptation to climate change conditions should be considered.

Environmental sustainability analysis of UK whole-wheat bioethanol and CHP systems

International Nuclear Information System (INIS)

Martinez-Hernandez, Elias; Ibrahim, Muhammad H.; Leach, Matthew; Sinclair, Phillip; Campbell, Grant M.; Sadhukhan, Jhuma

2013-01-01

The UK whole-wheat bioethanol and straw and DDGS-based combined heat and power (CHP) generation systems were assessed for environmental sustainability using a range of impact categories or characterisations (IC): cumulative primary fossil energy (CPE), land use, life cycle global warming potential over 100 years (GWP 100 ), acidification potential (AP), eutrophication potential (EP) and abiotic resources use (ARU). The European Union (EU) Renewable Energy Directive's target of greenhouse gas (GHG) emission saving of 60% in comparison to an equivalent fossil-based system by 2020 seems to be very challenging for stand-alone wheat bioethanol system. However, the whole-wheat integrated system, wherein the CHP from the excess straw grown in the same season and from the same land is utilised in the wheat bioethanol plant, can be demonstrated for potential sustainability improvement, achieving 85% emission reduction and 97% CPE saving compared to reference fossil systems. The net bioenergy from this system and from 172,370 ha of grade 3 land is 12.1 PJ y −1 providing land to energy yield of 70 GJ ha −1 y −1 . The use of DDGS as an animal feed replacing soy meal incurs environmental emission credit, whilst its use in heat or CHP generation saves CPE. The hot spots in whole system identified under each impact category are as follows: bioethanol plant and wheat cultivation for CPE (50% and 48%), as well as for ARU (46% and 52%). EP and GWP 100 are distributed among wheat cultivation (49% and 37%), CHP plant (26% and 30%) and bioethanol plant (25%, and 33%), respectively. -- Highlights: ► UK whole-wheat energy system can achieve 85% GHG emission reduction. ► UK whole-wheat energy system can achieve 97% primary energy saving. ► The land to energy yield of the UK whole-wheat system is 70 GJ ha −1 y −1 . ► Fertiliser production is the hotspot. ► DDGS and straw-based CHP system integration to wheat bioethanol is feasible

Genomic Imprinting Was Evolutionarily Conserved during Wheat Polyploidization.

Science.gov (United States)

Yang, Guanghui; Liu, Zhenshan; Gao, Lulu; Yu, Kuohai; Feng, Man; Yao, Yingyin; Peng, Huiru; Hu, Zhaorong; Sun, Qixin; Ni, Zhongfu; Xin, Mingming

2018-01-01

Genomic imprinting is an epigenetic phenomenon that causes genes to be differentially expressed depending on their parent of origin. To evaluate the evolutionary conservation of genomic imprinting and the effects of ploidy on this process, we investigated parent-of-origin-specific gene expression patterns in the endosperm of diploid ( Aegilops spp), tetraploid, and hexaploid wheat ( Triticum spp) at various stages of development via high-throughput transcriptome sequencing. We identified 91, 135, and 146 maternally or paternally expressed genes (MEGs or PEGs, respectively) in diploid, tetraploid, and hexaploid wheat, respectively, 52.7% of which exhibited dynamic expression patterns at different developmental stages. Gene Ontology enrichment analysis suggested that MEGs and PEGs were involved in metabolic processes and DNA-dependent transcription, respectively. Nearly half of the imprinted genes exhibited conserved expression patterns during wheat hexaploidization. In addition, 40% of the homoeolog pairs originating from whole-genome duplication were consistently maternally or paternally biased in the different subgenomes of hexaploid wheat. Furthermore, imprinted expression was found for 41.2% and 50.0% of homolog pairs that evolved by tandem duplication after genome duplication in tetraploid and hexaploid wheat, respectively. These results suggest that genomic imprinting was evolutionarily conserved between closely related Triticum and Aegilops species and in the face of polyploid hybridization between species in these genera. © 2018 American Society of Plant Biologists. All rights reserved.

Gamma radiation influence on technological characteristics of wheat flour

International Nuclear Information System (INIS)

Teixeira, Christian A.H.M.; Inamura, Patricia Y.; Uehara, Vanessa B.; Mastro, Nelida L.d.

2012-01-01

This study aimed at determining the influence of gamma radiation on technological characteristics of wheat (Triticum sativum) flour and physical properties of pan breads made with this flour. The bread formulation included wheat flour, water, milk, salt, sugar, yeast and butter. The α-amylase activity of wheat flour irradiated with 1, 3 and 9 kGy in a Gammacell 220 (AECL), one day, five days and one month after irradiation was evaluated. Deformation force, height and weight of breads prepared with the irradiated flour were also determined. The enzymatic activity increased—reduction of falling number time—as radiation dose increased, their values being 397 s (0 kGy), 388 s (1 kGy), 343 s (3 kGy) and 293 s (9 kGy) respectively, remaining almost constant over the period of one month. Pan breads prepared with irradiated wheat flour showed increased weight. Texture analysis showed that bread made of irradiated flour presented an increase in maximum deformation force. The results indicate that wheat flour ionizing radiation processing may confer increased enzymatic activity on bread making and depending on the irradiation dose, an increase in weight, height and deformation force parameters of pan breads made of it. - Highlights: ► We study the influence of gamma radiation on wheat flour and properties of breads. ► Falling number decreased with radiation remaining almost constant up to one month. ► Ionizing radiation may confer an increase in texture parameters, weight and height on the bread.

What influences the composition of fungi in wheat grains?

Directory of Open Access Journals (Sweden)

Biruta Bankina

2017-12-01

Full Text Available Wheat grains are inhabited by different fungi, including plant pathogens and fungi – mycotoxin producers. The composition of seed mycobiota can be influenced by different factors, including agronomic practices, but the results are still contradictory. The aim of this study was to evaluate the mycobiota of wheat grains depending on agroecological conditions. Wheat grains were obtained from a two-factorial field trial: A – tillage system (A1 – ploughing at a depth of 22–24 cm; A2 – harrowing at a depth of up to 10 cm; B – crop rotation (B1 – continuous wheat; B2 – oilseed rape and wheat; B3 – crop rotation. The mycobiota of grain were determined by mycological and molecular methods. The most abundant and widespread of the mycobiota were Pyrenophora tritici-repentis, Alternaria spp., Arthrinium spp., and Fusarium avenaceum. Higher amounts of precipitation increased the infection of grains with Fusarium fungi. Seven species of Fusarium were identified in the grain samples: F. avenaceum, F. poae, F. graminearum, F. culmorum, F. acuminatum, F. sporotrichioides, and F. tricinctum. The soil tillage method and crop rotation did not influence the total incidence of Fusarium spp., but the abundance of a particular species differed depending on agronomic practice. The research suggests that continuous wheat sowing under conditions of reduced soil tillage can increase the level of risk of grain infection with F. graminearum and, consequently, the accumulation of mycotoxins.

COMPARATIVE CHARACTERISTICS BETWEEN CULTURES: COMMON WHEAT, EINKORN AND SPELT

Directory of Open Access Journals (Sweden)

Goryana Yonkova

2016-09-01

Full Text Available Over the past few years in Bulgaria there is an increasing interest in organic production of healthy cereals einkorn and spelt. Typical for them is that they are unpretentious to the soil, resistant to major diseases and pests occurring in cereals. Einkorn and spelt are considered the most ancient types of wheat today and now they are perceived as healthy food. They are distinguished from ordinary wheat in the following parameters: higher percentage of protein; greater amount of fiber, minerals and vitamins /twice higher contents of Vitamin A; vitamins B; calcium, phosphorus, iron, zinc and others/; they do not contain cholesterol. They outmach the common wheat in the content of selenium and antioxidants, the amount of gluten is minimized. It does not cause allergic reactions in people suffering from celiac disease /in which the specific protein is not digested, in this case - gluten/. The reason for this property is the content of only 14 chromosomes as opposed to 28 in the common wheat and 42 in the modern types of wheat, which makes it easy to assimilate. Because of the hard shell flakes the grain of einkorn does not absorb harmful substances from soil /eg heavy metals/ which is a problem in modern wheat varieties. This article examines the energy and nutritional qualities of those cereals and the possibility einkorn and spelled to be an alternative in agricultural production - both in crop and animal husbandry.

Compositional Study for Improving Wheat Flour with Functional Ingredients

Directory of Open Access Journals (Sweden)

Livia Apostol

2015-11-01

Full Text Available Helianthus tuberosus L. is cultivated widely across for its edible tuber. As a source of inulin with aperient, cholagogue and tonic effects, its tubers have been used for the treatment of diabetes. Also, the leaves of Helianthus tuberosus L. show antipyretic, analgesic effects and are therefore used for the treatment of bone fracture, skin wound and pain. The main aim of this study is to establish the optimum dose from rheological and nutritional point of view of Helianthus tuberosus L. tuber flour and leaves flour used as functional ingredient in bakery products industry. The types of mixtures of flours used in this study was: P1–100% wheat flour; P2-93% wheat flour + 7% Helianthus tuberosus (5% tuber + 2% leaves; P3-92% wheat flour + 8% Helianthus tuberosus (5% tuber + 3% leaves; P4- 90% wheat flour + 10%  Helianthus tuberosus (5% tuber + 5% leaves; P5 -100% Helianthus tuber; P6- Helianthus leaves. The potential functional of wheat flour enriched with the Helianthus tuberosus, in different proportions, was evaluated concerning chemical composition and rheological behaviour of the doughs. Adding of the Helianthus tuberosus L. tuber and leaves provoked an effect increasing the levels of inulin, minerals and fiber in wheat flour. The rheological properties of dough showed that P2, kept the rheological parameters for the technological behavior in order to obtain an acceptable quality of the bakery products. 

Molecular markers for predicting end-products quality of wheat ...

African Journals Online (AJOL)

Molecular markers for predicting end-products quality of wheat (Triticum aestivum L.) ... African Journal of Biotechnology. Journal Home · ABOUT ... Four new Saudi wheat lines (KSU 102, KSU 103, KSU 105 and KSU 106) and two. American ...

BIRTH DEFECTS IN FOUR U.S. WHEAT-PRODUCING STATES

Science.gov (United States)

Birth Defects in Four U.S. Wheat - Producing StatesDina M. Schreinemachers, National Health and Environmental Effects Research Laboratory, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, NC 27711Wheat agriculture in Mi...

Gamma radiation influence on technological characteristics of wheat flour

Science.gov (United States)

Teixeira, Christian A. H. M.; Inamura, Patricia Y.; Uehara, Vanessa B.; Mastro, Nelida L. d.

2012-08-01

This study aimed at determining the influence of gamma radiation on technological characteristics of wheat (Triticum sativum) flour and physical properties of pan breads made with this flour. The bread formulation included wheat flour, water, milk, salt, sugar, yeast and butter. The α-amylase activity of wheat flour irradiated with 1, 3 and 9 kGy in a Gammacell 220 (AECL), one day, five days and one month after irradiation was evaluated. Deformation force, height and weight of breads prepared with the irradiated flour were also determined. The enzymatic activity increased—reduction of falling number time—as radiation dose increased, their values being 397 s (0 kGy), 388 s (1 kGy), 343 s (3 kGy) and 293 s (9 kGy) respectively, remaining almost constant over the period of one month. Pan breads prepared with irradiated wheat flour showed increased weight. Texture analysis showed that bread made of irradiated flour presented an increase in maximum deformation force. The results indicate that wheat flour ionizing radiation processing may confer increased enzymatic activity on bread making and depending on the irradiation dose, an increase in weight, height and deformation force parameters of pan breads made of it.

White Whole-Wheat Flour Can Be Partially Substituted for Refined-Wheat Flour in Pizza Crust in School Meals without Affecting Consumption

Science.gov (United States)

Chan, Hing Wan; Burgess Champoux, Teri; Reicks, Marla; Vickers, Zata; Marquart, Len

2008-01-01

Objectives: Recent dietary guidance recommends that children consume at least three servings of whole-grains daily. This study examined whether white whole-wheat (WWW) flour can be partially substituted for refined-wheat (RW) flour in pizza crust without affecting consumption by children in a school cafeteria. Methods: Subjects included first to…

Biochemical characterization of digestive amylase of wheat bug ...

African Journals Online (AJOL)

STORAGESEVER

2009-08-04

Aug 4, 2009 ... ... Boyd et al., 2002). Wheat bug also feeds on different stage of developing grains. ... the grain during feeding, Wheat bug enzymes degrade gluten proteins and cause rapid relaxation of dough resulting in the production of .... A blank without substrate but with α-amylase extract and a control containing no ...

The role of whole-wheat grain and wheat and rye ingredients on the digestion and fermentation processes in the gut - a model experiment with pigs

DEFF Research Database (Denmark)

Legall, Maud; Serena, Anja; Jørgensen, Henry

2009-01-01

The effect of wheat and rye breads made from white wheat flour with added refined fibre (WFL), whole-wheat grain, wheat aleurone flour (WAF) or rye aleurone flour (RAF) on digestion and fermentation processes in the gut was studied in a model experiment with pigs. The diets were similar in dietary...... of the wheat-based diets primarily due to the higher intestinal viscosity. The DF composition had an impact on (P,0001) the site for fibre degradation in the large intestine. Thus, AX of the WAF bread, with the lowest degree of substitution, were fermented as much in the caecum as in the colon, whereas AX...... of the RAF bread, with an intermediary degree of substitution, were mainly fermented in the caecum. The WFL bread, rich in cellulose, was fermented more distally. Fermentation of experimental breads in the large intestine had no effect (P.005) on the production of metabolites, except for butyrate which...

Effect of planting date on yield of wheat genotypes in Sindh

International Nuclear Information System (INIS)

Khokhar, Z.; Hussain, I.

2010-01-01

Due to reduction in tillering period and increased risk of hot weather during grain filling, late planting results in linear reduction in wheat grain yield. A study was undertaken to determine the effects of planting dates on growth and yield of different wheat genotypes in Sindh. The trial was laid out in RCBD with split plot arrangement having four replications during 2000-01 and 2001-02 at Sakrand, Sindh. Four sowing dates i.e. November 1 and 15, December 1 and 15 were in main plots, whereas six wheat genotypes (V-7001, V-7002, V-7004, MPT-6, Abadgar-93, and Anmol-91) were in sub plots. Because of better tillering, plant growth, growth period, number of grain per unit area and grain weight, November 15 planted wheat had maximum grain yield of 5904 kg ha/sup -1/, followed by November 1 and December 1 which gave 5302 and 4948 kg ha/sup -1 /respectively. Wheat planted on December 15 resulted in minimum grain yield of 4756 kg ha/sup -1/. Wheat genotype, V-7002 had significantly (P<0.05) higher grain yield of 5578 kg ha/sup -1/ in comparison with other genotypes. Whereas genotype MPT-6 had grain yield of 5366 kg ha-1 that was also significantly higher than other genotypes. However, V-7004 had minimum grain yield of 4716 kg ha/sup -1/ in comparison with other genotypes. While evaluating performance of different genotypes on different sowing dates, V-7002 resulted in maximum yield on November 15 and late planting. On the other hand, V-7004 had lower yield on all planting dates. Results from the study revealed that maximum grain yield could be achieved with wheat planted in first fortnight of November and any delay in wheat planting might reduce wheat yield. (author)

Flour quality and kernel hardness connection in winter wheat

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Szabó B. P.

2016-12-01

Full Text Available Kernel hardness is controlled by friabilin protein and it depends on the relation between protein matrix and starch granules. Friabilin is present in high concentration in soft grain varieties and in low concentration in hard grain varieties. The high gluten, hard wheat our generally contains about 12.0–13.0% crude protein under Mid-European conditions. The relationship between wheat protein content and kernel texture is usually positive and kernel texture influences the power consumption during milling. Hard-textured wheat grains require more grinding energy than soft-textured grains.

Immunotoxicological evaluation of wheat genetically modified with TaDREB4 gene on BALB/c mice.

Science.gov (United States)

Liang, Chun Lai; Zhang, Xiao Peng; Song, Yan; Jia, Xu Dong

2013-08-01

To evaluate the immunotoxicological effects of genetically modified wheat with TaDREB4 gene in female BALB/c mice. Female mice weighing 18-22 g were divided into five groups (10 mice/group), which were set as negative control group, common wheat group, parental wheat group, genetically modified wheat group and cyclophosphamide positive control group, respectively. Mice in negative control group and positive control group were fed with AIN93G diet, mice in common wheat group, non-genetically modified parental wheat group and genetically modified wheat group were fed with feedstuffs added corresponding wheat (the proportion is 76%) for 30 days, then body weight, absolute and relative weight of spleen and thymus, white blood cell count, histological examination of immune organ, peripheral blood lymphocytes phenotyping, serum cytokine, serum immunoglobulin, antibody plaque-forming cell, serum half hemolysis value, mitogen-induced splenocyte proliferation, delayed-type hypersensitivity reaction and phagocytic activities of phagocytes were detected. No immunotoxicological effects related to the consumption of the genetically modified wheat were observed in BALB/c mice when compared with parental wheat group, common wheat group and negative control group. From the immunotoxicological point of view, results from this study demonstrate that genetically modified wheat with TaDREB4 gene is as safe as the parental wheat. Copyright © 2013 The Editorial Board of Biomedical and Environmental Sciences. Published by China CDC. All rights reserved.

Biodegradation of wheat straw by different isolates of Trichoderma spp.

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A.R. Astaraei

2016-04-01

Full Text Available Efficient use of agricultural wastes due to their recycling and possible production of cost effective materials, have economic and ecological advantages. A biological method used for degrading agricultural wastes is a new method for improving the digestibility of these materials and favoring the ease of degradation by other microorganisms. This research was carried out to study the possible biodegradation of wheat straw by different species and isolates of Trichoderma fungi. Two weeks after inoculation of wheat straw by different isolates, oven drying in 75◦C, the samples were weighted and (Acid Detergent Fiber ADF and NDF (Neutral Detergent Fiber reductions of each sample under influence of fungal growth were compared with their controls. The results showed that biodegradation of wheat straw were closely related to fungi species and also its isolates. The Reductions in NDF and ADF of wheat straw by T. reesei and T. longibrachiatum were more pronounced compared to others, although T. reesei was superior in ADF of wheat straw reduction. It is concluded that for improving in digestibility and also shortening the timing of composting process, it is recommended to treat the wheat straw with Trichoderma fungi and especially with T. reesei and T. longibrachiatum that performed well and had excellent efficiencies.

Involvement of Disperse Repetitive Sequences in Wheat/Rye Genome Adjustment

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Manuela Silva

2012-07-01

Full Text Available The union of different genomes in the same nucleus frequently results in hybrid genotypes with improved genome plasticity related to both genome remodeling events and changes in gene expression. Most modern cereal crops are polyploid species. Triticale, synthesized by the cross between wheat and rye, constitutes an excellent model to study polyploidization functional implications. We intend to attain a deeper knowledge of dispersed repetitive sequence involvement in parental genome reshuffle in triticale and in wheat-rye addition lines that have the entire wheat genome plus each rye chromosome pair. Through Random Amplified Polymorphic DNA (RAPD analysis with OPH20 10-mer primer we unraveled clear alterations corresponding to the loss of specific bands from both parental genomes. Moreover, the sequential nature of those events was revealed by the increased absence of rye-origin bands in wheat-rye addition lines in comparison with triticale. Remodeled band sequencing revealed that both repetitive and coding genome domains are affected in wheat-rye hybrid genotypes. Additionally, the amplification and sequencing of pSc20H internal segments showed that the disappearance of parental bands may result from restricted sequence alterations and unraveled the involvement of wheat/rye related repetitive sequences in genome adjustment needed for hybrid plant stabilization.

Genetic Parameters of Common Wheat in Nepal

OpenAIRE

Bal Krishna Joshi; Dhruba Bahadur Thapa; Madan Raj Bhatta

2015-01-01

Knowledge on variation within traits and their genetics are prerequisites in crop improvement program. Thus, in present paper we aimed to estimate genetic and environmental indices of common wheat genotypes. For the purpose, eight quantitative traits were measured from 30 wheat genotypes, which were in randomized complete block design with 3 replicates. Components of variance and covariance were estimated along with heritability, genetic gain, realized heritability, coheritability and correla...

The Response of Durum Wheat to the Preceding Crop in a Mediterranean Environment

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Laura Ercoli

2014-01-01

Full Text Available Crop sequence is an important management practice that may affect durum wheat (Triticum durum Desf. production. Field research was conducted in 2007-2008 and 2008-2009 seasons in a rain-fed cold Mediterranean environment to examine the impact of the preceding crops alfalfa (Medicago sativa L., maize (Zea mays L., sunflower (Helianthus annuus L., and bread wheat (Triticum aestivum L. on yield and N uptake of four durum wheat varieties. The response of grain yield of durum wheat to the preceding crop was high in 2007-2008 and was absent in the 2008-2009 season, because of the heavy rainfall that negatively impacted establishment, vegetative growth, and grain yield of durum wheat due to waterlogging. In the first season, durum wheat grain yield was highest following alfalfa, and was 33% lower following wheat. The yield increase of durum wheat following alfalfa was mainly due to an increased number of spikes per unit area and number of kernels per spike, while the yield decrease following wheat was mainly due to a reduction of spike number per unit area. Variety growth habit and performance did not affect the response to preceding crop and varieties ranked in the order Levante > Saragolla = Svevo > Normanno.

[Immunotoxicologic assessment of genetically modified drought-resistant wheat T349 with GmDREB1].

Science.gov (United States)

Liang, Chun-lai; Li, Yong-ning; Zhang, Xiao-peng; Song, Yan; Wang, Wei; Fang, Jin; Cui, Wen-ming; Jia, Xu-dong

2012-06-01

To assess the immunotoxicologic effects of genetically modified drought resistant wheat T349 with GmDREB1 gene. A total of 250 female BALB/c mice (6-8 week-old, weight 18-22 g) were divided into five large groups (50 mice for each large group) by body weight randomly. In each large group, the mice were divided into five groups (10 mice for each group) by body weight randomly, which were set as negative control group, common wheat group, parental wheat group, genetically modified wheat group and cyclophosphamide positive control group, respectively. Mice in negative control and positive control group were fed with feedstuff AIN-93G, mice in common wheat group, non-genetically modified parental wheat group and genetically modified wheat group were fed with feedstuffs added corresponding wheat (proportion up to 76%) for 30 days, then body weight, organ coefficient of spleen and thymus, peripheral blood lymphocytes phenotyping, serum cytokine, serum immunoglobulin, antibody plaque-forming cell (PFC), serum 50% hemolytic value (HC50), mitogen-induced splenocyte proliferation, delayed-type hypersensitivity (DTH) reaction and phagocytic activities of phagocytes were detected respectively. After 30 days raise, among negative control group, common wheat group, non-genetically modified parental wheat group, genetically modified wheat group and cyclophosphamide positive control group, mice body weight were (21.0±0.3), (20.4±0.7), (21.1±1.0), (21.1±1.0), (19.4±1.0) g, respectively (F=7.47, Pgenetically modified drought-resistant wheat T349 was substantially equivalent to parental wheat in the effects on immune organs and immunologic functions of mice, and it didn't show immunotoxicity.

Dryland wheat domestication changed the development of aboveground architecture for a well-structured canopy.

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Pu-Fang Li

Full Text Available We examined three different-ploidy wheat species to elucidate the development of aboveground architecture and its domesticated mechanism under environment-controlled field conditions. Architecture parameters including leaf, stem, spike and canopy morphology were measured together with biomass allocation, leaf net photosynthetic rate and instantaneous water use efficiency (WUE(i. Canopy biomass density was decreased from diploid to tetraploid wheat, but increased to maximum in hexaploid wheat. Population yield in hexaploid wheat was higher than in diploid wheat, but the population fitness and individual competition ability was higher in diploid wheats. Plant architecture was modified from a compact type in diploid wheats to an incompact type in tetraploid wheats, and then to a more compact type of hexaploid wheats. Biomass accumulation, population yield, harvest index and the seed to leaf ratio increased from diploid to tetraploid and hexaploid, associated with heavier specific internode weight and greater canopy biomass density in hexaploid and tetraploid than in diploid wheat. Leaf photosynthetic rate and WUEi were decreased from diploid to tetraploid and increased from tetraploid to hexaploid due to more compact leaf type in hexaploid and diploid than in tetraploid. Grain yield formation and WUEi were closely associated with spatial stance of leaves and stems. We conclude that the ideotype of dryland wheats could be based on spatial reconstruction of leaf type and further exertion of leaf photosynthetic rate.

Detection of greenbug infestation on wheat using ground-based radiometry

Science.gov (United States)

Yang, Zhiming

Scope of methods of study. The purpose of this greenhouse study was to characterize stress in wheat caused by greenbugs using ground-based radiometry. Experiments were conducted to (a) identify spectral bands and vegetation indices sensitive to greenbug infestation; (b) differentiate stress caused due to greenbugs from water stress; (c) examine the impacts of plant growth stage on detection of greenbug infestation; and (d) compare infestations due to greenbug and Russian wheat aphid. Wheat (variety-TAM 107) was planted (seed spacing 1 in. x 3 in.) in plastic flats with dimension 24 in. x 16 in. x 8.75 in. Fifteen days after sowing, wheat seedlings were infested with greenbugs (biotype-E). Nadir measurement of canopy reflectance started the day after infestation and lasted until most infested plants were dead. Using a 16-band Cropscan radiometer, spectral reflectance data were collected daily (between 13:00--14:00 hours) and 128 vegetation indices were derived in addition to greenbug counts per tiller. Using SAS PROC MIXED, sensitivity of band and vegetation indices was identified based on Threshold Day. Subsequent to Threshold Day there was a consistent significant spectral difference between control and infested plants. Sensitivity of band and vegetation indices was further examined using correlation and relative sensitivity analyses. Findings and conclusions. Results show that it is possible to detect greenbug-induced stress on wheat using hand-held radiometers, such as Cropscan. Band 694 nm and the ratio-based vegetation index (RVI) derived from the band 694 nm and 800 nm were identified as most sensitive to greenbug infestation. Landsat TM bands and their derived vegetation indices also show potential for detecting wheat stress caused by greenbug infestation. Also, RVIs particularly derived using spectral band 694 nm and 800 nm were found useful in differentiating greenbug infestation from water stress. Furthermore, vegetation indices such as Normalized total

Microarray gene expression during early healing of GBR-treated calvarial critical size defects.

Science.gov (United States)

Al-Kattan, R; Retzepi, M; Calciolari, E; Donos, N

2017-10-01

To investigate the gene expression and molecular pathways implicated in the regulation of the osseous healing process following guided bone regeneration (GBR). Six 6-month-old Wistar male rats were used. Standardized 5-mm critical size defects were created in the parietal bones of each animal and treated with an extracranial and intracranial ePTFE membrane, according to the GBR principle. Three animals were randomly sacrificed after 7 and 15 days of healing. Total RNA was extracted from each sample and prepared for gene expression analysis. RNA quality and quantity were assessed, followed by hybridization of the cRNA to Affymetrix GeneChip Rat Genome 230 2.0 Arrays. The Affymetrix data were processed, and first-order analysis, quality control and statistical analysis were performed. Biological interpretation was performed via pathway and Gene Ontology (GO) analysis. Between the 7- and 15-day samples, 538 genes were differently regulated. At day 7, inflammatory and immune responses were clearly upregulated. In addition, GO terms related to angiogenesis and cell cycle regulation were overexpressed. At day 15, a more complex cellular activity and cell metabolism were evident. The bone formation processes were significantly overexpressed, with several genes encoding growth factors, enzyme activity, and extracellular matrix formation found as upregulated. Remarkably, a negative regulation of Wnt signalling pathway was observed at 15 days. The gene expression profile of the cells participating in osseous formation varied depending on the healing stage. A number of candidate genes that seem differentially expressed during early stages of intramembranous bone regeneration was suggested. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

TEXTURE OF COOKED SPELT WHEAT NOODLES

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Magdaléna Lacko - Bartošová

2013-02-01

Full Text Available At present, there are limited and incomplete data on the ability of spelt to produce alimentary pasta of suitable quality. Noodles are traditional cereal-based food that is becoming increasingly popular worldwide because of its convenience, nutritional qualities, and palatability. It is generally accepted that texture is the main criterion for assessing overall quality of cooked noodles. We present selected indicators of noodle texture of three spelt cultivars – Oberkulmer Rotkorn, Rubiota and Franckenkorn grown in an ecological system at the locality of Dolna Malanta near Nitra. A texture analyzer TA.XT PLUS was used to determine cooked spelt wheat noodle firmness (N (AACC 66-50. The texture of cooked spelt wheat noodles was expressed also as elasticity (N and extensibility (mm. Statistical analysis showed significant influence of the variety and year of growing on the firmness, elasticity and extensibility of cooked noodles. The wholemeal spelt wheat noodles were characterized with lower cutting firmness than the flour noodles. Flour noodles were more tensile than wholemeal noodles. The best elasticity and extensibility of flour noodles was found in noodles prepared from Rubiota however from wholemeal noodles it was Oberkulmer Rotkorn. Spelt wheat is suitable for noodle production, however also here it is necessary to differentiate between varieties. According to achieved results, wholemeal noodles prepared from Oberkulmer Rotkorn can be recommended for noodle industry due to their consistent structure and better texture quality after cooking.

QTLs for seedling traits under salinity stress in hexaploid wheat

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Yongzhe Ren

2018-03-01

Full Text Available ABSTRACT: Soil salinity limits agricultural production and is a major obstacle for increasing crop yield. Common wheat is one of the most important crops with allohexaploid characteristic and a highly complex genome. QTL mapping is a useful way to identify genes for quantitative traits such as salinity tolerance in hexaploid wheat. In the present study, a hydroponic trial was carried out to identify quantitative trait loci (QTLs associated with salinity tolerance of wheat under 150mM NaCl concentration using a recombinant inbred line population (Xiaoyan 54×Jing 411. Values of wheat seedling traits including maximum root length (MRL, root dry weight (RDW, shoot dry weight (SDW, total dry weight (TDW and the ratio of TDW of wheat plants between salt stress and control (TDWR were evaluated or calculated. A total of 19QTLs for five traits were detected through composite interval mapping method by using QTL Cartographer version 2.5 under normal and salt stress conditions. These QTLs distributed on 12 chromosomes explained the percentage of phenotypic variation by individual QTL varying from 7.9% to 19.0%. Among them, 11 and six QTLs were detected under normal and salt stress conditions, respectively and two QTLs were detected for TDWR. Some salt tolerance related loci may be pleiotropic. Chromosome 1A, 3A and 7A may harbor crucial candidate genes associated with wheat salt tolerance. Our results would be helpful for the marker assisted selection to breed wheat varieties with improved salt tolerance.

Study on Prevalence of Mycoflora in Wheat Seeds

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Pratishtha Adhikari

2016-01-01

Full Text Available Forty seed sample of wheat (Triticum aestivum were collected from four locations viz. Chitwan, Kaski, Banke and Lalitpur and tested by blotter method at laboratory during 2013 for determining fungal pathogens associated with wheat seeds in Nepal. Eighteen species representing thirteen genera of fungi were recovered from the seed. Alternaria alternata and Bipolaris sorokiniana were predominant in all the varieties/genotypes from all the locations, where B. sorokiniana was strongly pathogenic in wheat crop. Percentage frequency and type of fungi detected varied with variety and locations. Bipolaris sorokiniana was highest (64.40% in Banke than remaining three locations. Seeds of Chitwan had lowest percentage (5.50% of seed infection as compared to other locations. Relative abundance of Alternaria alternata (55.10% was highest as it was the most prevalent component of seed borne mycoflora, followed by Bipolaris sorokiniana (34.69% and Cladosporium herbarum (7.19%. Differences in quantity of precipitation and relative humidity might be the possible reason for variation in frequency and type of fungi detected in wheat seeds of four locations.

EFFICACY OF IMIDACLOPRID (CONFIDOR 200 SL AGAINST APHIDS INFESTING WHEAT CROP

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N Joshi

2010-02-01

Full Text Available Imidacloprid (Confidor 200 SL was evaluated either alone or with a fungicide (Tilt 0.01% against wheat aphids. There were seven different treatments, including an untreated control. All the treatments were replicated three times in a similar field environment. Population of wheat aphids was recorded on randomly selected five plants in each plot at different intervals, both before and after the spraying. Confidor 200 SL @ 400 ml/ha treatment was found most effective against wheat aphids. However, mixing of Confidor 200 SL @ 100 ml/ha with Tilt @ 0.01 %, was found significantly least effective for wheat aphids control.

Tailoring wheat management to ENSO phases for increased wheat production in Paraguay

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Melissa A. Ramirez-Rodrigues

2014-01-01

Full Text Available Reported regional wheat yields in Paraguay vary from 1 to 3 t/ha from year to year, but appear not to be correlated with El Niño-Southern Oscillation (ENSO phases. Historical weather data from two locations in representative wheat-growing regions of Paraguay, Encarnación-Itapúa and Ciudad del Este-Alto Paraná combined with crop modeling, were analyzed to optimize nitrogen (N fertilizer application rates according to the ENSO phase of a growing season. The ENSO phase of a growing season was defined based on the average of the sea surface temperature (SST anomalies in the Eastern Equatorial Pacific region for the period June–October using the El Niño region 3.0 index (Niño 3.0. Simulated average yields in Alto Paraná were higher in the drier and cooler La Niña wheat-growing seasons (average of 3.5 t/ha compared to the other phases (average of 3.2 t/ha and in Itapúa, in Neutral seasons (average of 3.8 t/ha compared to the other phases (average of 3.7 t/ha. Accordingly, optimal N fertilizer applications ranged between 20 and 60 kg N/ha between phases depending on the sowing date, soil type and initial amount of soil water content. Applying an ENSO or General Circulation Model (GCM-based forecast for ENSO-season-type specific N fertilizer applications resulted in benefits of >100 US$/ha when compared with current farmers’ practice of consistently low N fertilizer applications in Paraguay. When N management based on forecasts was compared with optimized N application without forecast, the benefits of the forecast was only up to 8 US$/ha. The ENSO-persistence-based forecast showed higher values than the GCM-based forecasts with two lead-times but lower skill. Using climate information can significantly increase current wheat yields and gross margins in Paraguay by tailoring N fertilizer applications to the Niño 3.0-defined ENSO phases, which can be forecasted with moderate skill at the beginning of the growing season.

Effect of processing on phenolic composition of dough and bread fractions made from refined and whole wheat flour of three wheat varieties.

Science.gov (United States)

Lu, Yingjian; Luthria, Devanand; Fuerst, E Patrick; Kiszonas, Alecia M; Yu, Liangli; Morris, Craig F

2014-10-29

This study investigated the effect of breadmaking on the assay of phenolic acids from flour, dough, and bread fractions of three whole and refined wheat varieties. Comparison of the efficacy of two commonly used methods for hydrolysis and extraction of phenoilc acids showed that yields of total phenolic acids (TPA) were 5-17% higher among all varieties and flour types when samples were directly hydrolyzed in the presence of ascorbate and EDTA as compared to the method separating free, soluble conjugates and bound, insoluble phenolic acids. Ferulic acid (FA) was the predominant phenolic acid, accounting for means of 59 and 81% of TPA among all refined and whole wheat fractions, respectively. All phenolic acids measured were more abundant in whole wheat than in refined samples. Results indicated that the total quantified phenolic acids did not change significantly when breads were prepared from refined and whole wheat flour. Thus, the potential phytochemical health benefits of total phenolic acids appear to be preserved during bread baking.

Studies on the mutagenic and cytogenetic effects of irradiated wheat in mice

International Nuclear Information System (INIS)

Reddy, P.P.; Reddi, O.S.; Ebenezer, D.N.; Naidu, N.V.; Goud, S.N.

1978-01-01

A series of experiments were conducted to test the mutagenic and cytogenetic potentials of freshly and stored irradiated wheat in mice. In the first series, the effects of feeding of CBA mice for 8 weeks with the diet containing 60% of wheat freshly irradiated ( 3 H/He mice were undertaken. Feeding of both freshly and stored irradiated wheat showed neither an increase in dominant lethals and chromosomal aberrations nor a reduction in germ cells. In another series, the reproductive performance of the CBA females fed stored irradiated (75 krad) wheat was investigated and it was observed that the average total number of litters and the litter size did not vary from those of the females fed unirradiated wheat. (author)

Molecular Characterization of wheat stem rust races in Kenya

Science.gov (United States)

Stem or black rust caused by Puccinia graminis f. sp. tritici (Pgt) Erikss. & Henning causes severe losses to wheat (Triticum aestivum L.), historically threatening global wheat production. Characterizing prevalent isolates of Pgt would enhance the knowledge of population dynamics and evolution of t...

Occurrence of 'super soft' wheat kernel texture in hexaploid and tetraploid wheats

Science.gov (United States)

Wheat kernel texture is a key trait that governs milling performance, flour starch damage, flour particle size, flour hydration properties, and baking quality. Kernel texture is commonly measured using the Perten Single Kernel Characterization System (SKCS). The SKCS returns texture values (Hardness...

Genome wide identification of wheat and Brachypodium type one protein phosphatases and functional characterization of durum wheat TdPP1a.

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Mariem Bradai

Full Text Available Reversible phosphorylation is an essential mechanism regulating signal transduction during development and environmental stress responses. An important number of dephosphorylation events in the cell are catalyzed by type one protein phosphatases (PP1, which catalytic activity is driven by the binding of regulatory proteins that control their substrate specificity or subcellular localization. Plants harbor several PP1 isoforms accounting for large functional redundancies. While animal PP1s were reported to play relevant roles in controlling multiple cellular processes, plant orthologs remain poorly studied. To decipher the role of plant PP1s, we compared PP1 genes from three monocot species, Brachypodium, common wheat and rice at the genomic and transcriptomic levels. To gain more insight into the wheat PP1 proteins, we identified and characterized TdPP1a, the first wheat type one protein phosphatase from a Tunisian durum wheat variety Oum Rabiaa3. TdPP1a is highly conserved in sequence and structure when compared to mammalian, yeast and other plant PP1s. We demonstrate that TdPP1a is an active, metallo-dependent phosphatase in vitro and is able to interact with AtI2, a typical regulator of PP1 functions. Also, TdPP1a is capable to complement the heat stress sensitivity of the yeast mutant indicating that TdPP1a is functional also in vivo. Moreover, transient expression of TdPP1a::GFP in tobacco leaves revealed that it is ubiquitously distributed within the cell, with a strong accumulation in the nucleus. Finally, transcriptional analyses showed similar expression levels in roots and leaves of durum wheat seedlings. Interestingly, the expression in leaves is significantly induced following salinity stress, suggesting a potential role of TdPP1a in wheat salt stress response.

Application of porous foams for size-selective measurements of airborne wheat allergen

NARCIS (Netherlands)

Bogdanovic, J.; Pater, A.J. de; Doekes, G.; Wouters, I.M.; Heederik, D.J.J.

2006-01-01

Background: Exposure to airborne wheat allergen is a well-known cause of bakers' allergy and asthma. Airborne wheat allergen can be measured by enzyme immunoassays (EIAs) in extracts of inhalable dust samples, but only limited knowledge is available on the size distribution of wheat

Salicylic acid regulates basal resistance to Fusarium head blight in wheat.

Science.gov (United States)

Makandar, Ragiba; Nalam, Vamsi J; Lee, Hyeonju; Trick, Harold N; Dong, Yanhong; Shah, Jyoti

2012-03-01

Fusarium head blight (FHB) is a destructive disease of cereal crops such as wheat and barley. Previously, expression in wheat of the Arabidopsis NPR1 gene (AtNPR1), which encodes a key regulator of salicylic acid (SA) signaling, was shown to reduce severity of FHB caused by Fusarium graminearum. It was hypothesized that SA signaling contributes to wheat defense against F. graminearum. Here, we show that increased accumulation of SA in fungus-infected spikes correlated with elevated expression of the SA-inducible pathogenesis-related 1 (PR1) gene and FHB resistance. In addition, FHB severity and mycotoxin accumulation were curtailed in wheat plants treated with SA and in AtNPR1 wheat, which is hyper-responsive to SA. In support of a critical role for SA in basal resistance to FHB, disease severity was higher in wheat expressing the NahG-encoded salicylate hydroxylase, which metabolizes SA. The FHB-promoting effect of NahG was overcome by application of benzo (1,2,3), thiadiazole-7 carbothioic acid S-methyl ester, a synthetic functional analog of SA, thus confirming an important role for SA signaling in basal resistance to FHB. We further demonstrate that jasmonate signaling has a dichotomous role in wheat interaction with F. graminearum, constraining activation of SA signaling during early stages of infection and promoting resistance during the later stages of infection.

Wheat crown rot pathogens Fusarium graminearum and F. pseudograminearum lack specialization.

Science.gov (United States)

Chakraborty, Sukumar; Obanor, Friday; Westecott, Rhyannyn; Abeywickrama, Krishanthi

2010-10-01

This article reports a lack of pathogenic specialization among Australian Fusarium graminearum and F. pseudograminearum causing crown rot (CR) of wheat using analysis of variance (ANOVA), principal component and biplot analysis, Kendall's coefficient of concordance (W), and κ statistics. Overall, F. pseudograminearum was more aggressive than F. graminearum, supporting earlier delineation of the crown-infecting group as a new species. Although significant wheat line-pathogen isolate interaction in ANOVA suggested putative specialization when seedlings of 60 wheat lines were inoculated with 4 pathogen isolates or 26 wheat lines were inoculated with 10 isolates, significant W and κ showed agreement in rank order of wheat lines, indicating a lack of specialization. The first principal component representing nondifferential aggressiveness explained a large part (up to 65%) of the variation in CR severity. The differential components were small and more pronounced in seedlings than in adult plants. By maximizing variance on the first two principal components, biplots were useful for highlighting the association between isolates and wheat lines. A key finding of this work is that a range of analytical tools are needed to explore pathogenic specialization, and a statistically significant interaction in an ANOVA cannot be taken as conclusive evidence of specialization. With no highly resistant wheat cultivars, Fusarium isolates mostly differ in aggressiveness; however, specialization may appear as more resistant cultivars become widespread.

Induced mutations for disease resistance in wheat and barley

International Nuclear Information System (INIS)

Hanis, M.; Hanisova, A.; Knytl, V.; Cerny, J.; Benc, S.

1977-01-01

The induction of mutations in cultivars of wheat (Triticum aestivum), barley (Hordeum vulgare), and field beans (Phaseolus vulgaris) has been part of the breeding programme at the Plant Breeding Station at Stupice since 1960. A total of 26 cultivars or selections of winter wheat, 4 cultivars or selections of spring wheat, 2 cultivars of field beans, and 43 selections of spring barley have been treated since 1960. A total of 140 mutant lines of wheat and 37 mutant lines of barley with improved disease resistance of a race-specific type have been obtained. Several mutation programme derived cultivars have been registered in Czechoslovakia (''Diamant'', ''Ametyst'', ''Favorit'', ''Hana'', ''Rapid'', and ''Atlas'' in barley, and ''Alfa'' in field beans), but none of them is a mutation for disease resistance. A series of mutants have been used in crossing programmes. Approaches to improve the efficiency of mutation breeding for disease resistance are suggested. (author)

Biological efficiency of component crops in different geometrical patterns of wheat-linseed intercropping

International Nuclear Information System (INIS)

Nazir, M. S.; Saeed, M.; Khan, I.; Ghaffar, A.

2005-01-01

An experiment to determine the biological efficiency and agro-economic relationships of component crops in wheat-linseed intercropping under different geometrical patterns, was conducted on sandy-clay loam soil at Faisalabad (Pakistan). Wheat was sown in 100-cm spaced 4, 6, 8, and 10 row strips and was intercropped with three rows of linseed. The component crops were also grown alone in 30-cm spaced single row. Wheat grain yield was reduced by 25.6%, 19.2%, 14.7% and 11.9% by intercropping linseed in wheat grown in the pattern of 4, 6 and 10-row strips, respectively. However, at the cost of this much reduction in wheat yield, linseed gave an additional yields of 516, 412, 335 kg/ha in the respective patterns which resulted in yield advantages of 41%, 31%, 29% and 27%, respectively over sole cropping of wheat. Intercropping also generated higher net monetary gain/ha (Rs. 12378-12826) than monocropped wheat (Rs. 11034) and linseed (Rs. 4249). (author)

Wheat production in Bangladesh: its future in the light of global warming

Science.gov (United States)

Hossain, Akbar; Teixeira da Silva, Jaime A.

2012-01-01

Background and aims The most fundamental activity of the people of Bangladesh is agriculture. Modelling projections for Bangladesh indicate that warmer temperatures linked to climate change will severely reduce the growth of various winter crops (wheat, boro rice, potato and winter vegetables) in the north and central parts. In summer, crops in south-eastern parts of the country are at risk from increased flooding as sea levels increase. Key facts Wheat is one of the most important winter crops and is temperature sensitive and the second most important grain crop after rice. In this review, we provide an up-to-date and detailed account of wheat research of Bangladesh and the impact that global warming may have on agriculture, especially wheat production. Although flooding is not of major importance or consequence to the wheat crop at present, some perspectives are provided on this stress since wheat is flood sensitive and the incidence of flooding is likely to increase. Projections This information and projections will allow wheat breeders to devise new breeding programmes to attempt to mitigate future global warming. We discuss what this implies for food security in the broader context of South Asia. PMID:23304431

Wheat Intercropping Enhances the Resistance of Watermelon to Fusarium Wilt

OpenAIRE

Huifang Lv; Huifang Lv; Haishun Cao; Muhammad A. Nawaz; Hamza Sohail; Yuan Huang; Fei Cheng; Qiusheng Kong; Zhilong Bie

2018-01-01

A fungus Fusarium oxysporum F. sp. niveum (FON) is the causal organism of Fusarium wilt in watermelon. In this study, we evaluated the effect of wheat intercropping on the Fusarium wilt of watermelon. Our results showed that wheat intercropping decreases the incidence of Fusarium wilt of watermelon, likely due to the secretion of coumaric acid from the roots of wheat that dramatically inhibits FON spore germination, sporulation, and growth. The secretion of p-hydroxybenzoic acid, ferulic acid...

Data from the Hot Serial Cereal Experiment for modeling wheat response to temperature: field experiments and AgMIP-Wheat multi-model simulations

NARCIS (Netherlands)

Martre, Pierre; Kimball, Bruce A.; Ottman, Michael J.; Wall, Gerard W.; White, Jeffrey W.; Asseng, Senthold; Ewert, Frank; Cammarano, Davide; Maiorano, Andrea; Aggarwal, Pramod K.; Supit, I.; Wolf, J.

2018-01-01

The dataset reported here includes the part of a Hot Serial Cereal Experiment (HSC) experiment recently used in the AgMIP-Wheat project to analyze the uncertainty of 30 wheat models and quantify their response to temperature. The HSC experiment was conducted in an open-field in a semiarid

Exploiting a wheat EST database to assess genetic diversity.

Science.gov (United States)

Karakas, Ozge; Gurel, Filiz; Uncuoglu, Ahu Altinkut

2010-10-01

Expressed sequence tag (EST) markers have been used to assess variety and genetic diversity in wheat (Triticum aestivum). In this study, 1549 ESTs from wheat infested with yellow rust were used to examine the genetic diversity of six susceptible and resistant wheat cultivars. The aim of using these cultivars was to improve the competitiveness of public wheat breeding programs through the intensive use of modern, particularly marker-assisted, selection technologies. The F(2) individuals derived from cultivar crosses were screened for resistance to yellow rust at the seedling stage in greenhouses and adult stage in the field to identify DNA markers genetically linked to resistance. Five hundred and sixty ESTs were assembled into 136 contigs and 989 singletons. BlastX search results showed that 39 (29%) contigs and 96 (10%) singletons were homologous to wheat genes. The database-matched contigs and singletons were assigned to eight functional groups related to protein synthesis, photosynthesis, metabolism and energy, stress proteins, transporter proteins, protein breakdown and recycling, cell growth and division and reactive oxygen scavengers. PCR analyses with primers based on the contigs and singletons showed that the most polymorphic functional categories were photosynthesis (contigs) and metabolism and energy (singletons). EST analysis revealed considerable genetic variability among the Turkish wheat cultivars resistant and susceptible to yellow rust disease and allowed calculation of the mean genetic distance between cultivars, with the greatest similarity (0.725) being between Harmankaya99 and Sönmez2001, and the lowest (0.622) between Aytin98 and Izgi01.

Exploiting a wheat EST database to assess genetic diversity

Directory of Open Access Journals (Sweden)

Ozge Karakas

2010-01-01

Full Text Available Expressed sequence tag (EST markers have been used to assess variety and genetic diversity in wheat (Triticum aestivum. In this study, 1549 ESTs from wheat infested with yellow rust were used to examine the genetic diversity of six susceptible and resistant wheat cultivars. The aim of using these cultivars was to improve the competitiveness of public wheat breeding programs through the intensive use of modern, particularly marker-assisted, selection technologies. The F2 individuals derived from cultivar crosses were screened for resistance to yellow rust at the seedling stage in greenhouses and adult stage in the field to identify DNA markers genetically linked to resistance. Five hundred and sixty ESTs were assembled into 136 contigs and 989 singletons. BlastX search results showed that 39 (29% contigs and 96 (10% singletons were homologous to wheat genes. The database-matched contigs and singletons were assigned to eight functional groups related to protein synthesis, photosynthesis, metabolism and energy, stress proteins, transporter proteins, protein breakdown and recycling, cell growth and division and reactive oxygen scavengers. PCR analyses with primers based on the contigs and singletons showed that the most polymorphic functional categories were photosynthesis (contigs and metabolism and energy (singletons. EST analysis revealed considerable genetic variability among the Turkish wheat cultivars resistant and susceptible to yellow rust disease and allowed calculation of the mean genetic distance between cultivars, with the greatest similarity (0.725 being between Harmankaya99 and Sönmez2001, and the lowest (0.622 between Aytin98 and Izgi01.

Comparative physical mapping between wheat chromosome arm 2BL and rice chromosome 4.

Science.gov (United States)

Lee, Tong Geon; Lee, Yong Jin; Kim, Dae Yeon; Seo, Yong Weon

2010-12-01

Physical maps of chromosomes provide a framework for organizing and integrating diverse genetic information. DNA microarrays are a valuable technique for physical mapping and can also be used to facilitate the discovery of single feature polymorphisms (SFPs). Wheat chromosome arm 2BL was physically mapped using a Wheat Genome Array onto near-isogenic lines (NILs) with the aid of wheat-rice synteny and mapped wheat EST information. Using high variance probe set (HVP) analysis, 314 HVPs constituting genes present on 2BL were identified. The 314 HVPs were grouped into 3 categories: HVPs that match only rice chromosome 4 (298 HVPs), those that match only wheat ESTs mapped on 2BL (1), and those that match both rice chromosome 4 and wheat ESTs mapped on 2BL (15). All HVPs were converted into gene sets, which represented either unique rice gene models or mapped wheat ESTs that matched identified HVPs. Comparative physical maps were constructed for 16 wheat gene sets and 271 rice gene sets. Of the 271 rice gene sets, 257 were mapped to the 18-35 Mb regions on rice chromosome 4. Based on HVP analysis and sequence similarity between the gene models in the rice chromosomes and mapped wheat ESTs, the outermost rice gene model that limits the translocation breakpoint to orthologous regions was identified.

[Effects of wheat root exudates on cucumber growth and soil fungal community structure].

Science.gov (United States)

Wu, Feng-Zhi; Li, Min; Cao, Peng; Ma, Ya-Fei; Wang, Li-Li

2014-10-01

With wheat as the donor plant and cucumber as the receptor plant, this study investigated the effects of root exudates from wheat cultivars with different allelopathic potentials (positive or negative) and companion cropping with wheat on soil fungal community structure by PCR-DGGE method and cucumber growth. Results showed that the wheat root exudates with positive allelopathic potential increased height and stem diameter of cucumber seedlings significantly, compared to the control seedlings (W) after 6 days and 12 days treatment, respectively. Also, wheat root exudates with both positive and negative allelopathic potential increased the seedling height of cucumber significantly after 18 days treatment. The wheat root exudates with different allelopathic potentials decreased the band number, Shannon and evenness indices of soil fungal community significantly in cucumber seedling rhizosphere, and those in the soil with the control seedlings (W) were also significantly higher than that in the control soil without seedlings (Wn) after 6 days treatment. The band number, Shannon and evenness indices in all the treatments were significantly higher than those in the control soil without seedlings (Wn) after 18 days treatment. Companion cropping with negative allelopathic potential wheat decreased the Shannon and evenness indices of soil fungi community significantly in the cucumber seedling rhizosphere, suggesting the wheat root exudates and companion cropping with wheat changed soil fungal community structure in the cucumber seedling rhizosphere. The results of DGGE map and the principal component analysis showed that companion cropping with wheat cultivars with different allelopathic potentials changed soil fungal community structure in cucumber seedling rhizosphere.

Immunofluorescent determination of wheat protein in meat products

Directory of Open Access Journals (Sweden)

Michaela Petrášová

2014-02-01

Full Text Available In food industry nowadays, there are various plant-origin protein additives which are meant for production of meat products. Among the most frequent additives of this type there are different kinds of flour, starch, fiber, and plant-origin proteins. Their usage at present is limited by the existing legislation not to prevent consumer deception but also for reasons of possible influence on consumer health. Therefore, this problem is paid a lot of attention not only in the Czech Republic but also all over the world. The main risk is seen in the impossibility to choose a suitable foodstuff for an individual prone to allergic reactions. Potential allergens are also often plant-origin raw materials which are added into foodstuffs for their technological qualities and low price. Wheat is widely cultivated cereal as well as an important source of proteins. After ingestion or inhalation, wheat proteins may cause adverse reactions. These adverse effects include a wide range of disorders which are dependent on the method of contact with wheat protein. These adverse effects can then take the form of various clinical manifestations, such as celiac disease, T-cell mediated inflammatory bowel disease, dermatitis, skin rash, breathing difficulties, allergy to pollen or to wheat flour or food allergy to foodstuffs containing gluten. The only possible protection against adverse immune reactions for those with food allergies is strictly excluding the allergen from their diet. Although the number of studies dealing with the reduction or loss of allergenicity is increasing, yet these practices are not common. Most of the population suffering from food allergies is thus still dependent on strict exclusion of foodstuffs causing adverse allergic reactions from their diet. In order to avoid misleading consumers and also to protect allergic consumers, analytical methods applicable to all types of foodstuffs have been developed. Unfortunately, detection of allergens in

Thermal transitions of the amorphous polymers in wheat straw

DEFF Research Database (Denmark)

Stelte, Wolfgang; Clemons, Craig; Holm, Jens K.

2011-01-01

The thermal transitions of the amorphous polymers in wheat straw were investigated using dynamic mechanical thermal analysis (DMTA). The study included both natural and solvent extracted wheat straw, in moist (8–9% water content) and dry conditions, and was compared to spruce samples. Under...

Phytochemical composition and antioxidant capacity of whole wheat products

Science.gov (United States)

Whole wheat contains an array of phytochemicals. We quantified alkylresorcinols (AR), phenolic acids, phytosterols, and tocols in six whole wheat products and characterized their antioxidant capacity and ability to induce quinone reductase activity (QR). Total AR content ranged from 136.8 to 233.9 m...

The content and distribution of steryl ferulates in wheat produced in Japan.

Science.gov (United States)

Tsuzuki, Wakako; Mogushi, Hiroyuki; Kawahara, Shuji; Kotake-Nara, Eiichi; Komba, Shiro; Kanai, Yoshikazu; Yamada, Sumiyo; Horigane, Akira

2017-03-01

Oryzanol contained in rice bran is a complex mixture of steryl ferulates (SFs) with many identified health benefits. Recently, SF has been shown to exist in other cereals such as wheat, rye, and corn. In this study, SFs in several wheats produced in Japan were analyzed. For instance, SF content of whole wheat grain, Yumekaori (Japan) was 15.2 ± 1.4 mg-oryzanol-equivalent/100 g grain, while that of the imported one, 1CW (Canada) was 11.4 ± 1.3 mg-oryzanol-equivalent/100 g grain. The main SF components in the examined wheats were campesteryl ferulate, campestanyl ferulate, and sitostanyl ferulate. SF distribution in whole wheat grain was investigated using 14 fractions produced by a conventional test milling machine. SF was intensively accumulated in the four bran fractions (24 - 95 mg-oryzanol-equivalent/100 g bran fraction). These results suggest that the wheat bran would be an important source of SF.

New advances of wheat mutation breeding in Heilongjiang Province

International Nuclear Information System (INIS)

Sun Guangzu

1991-09-01

Five wheat varieties have been released between 1980 and 1990, these varieties possess early maturity, high yield, good quality, disease resistance and wide adaptability. They have been cultivated on 373 330 ha. Some of them are proved to be very valuable germ plasma for cross breeding. Technique of induced wheat mutation have been studied. Since selecting adaptable irradiation conditions, using combination of radiation with hybridization, irradiating male gamete, female gamete and zygote, soaking treatment with KH+2 32 PO 4 , etc., the efficiency of induced mutation have been increased. By combining radiation with distant hybridization, F 0 unfruitfulness and F 1 sterility have been overcome, and 21 wheat-rye translocation lines have been selected. One of them, 6BS/6RL translocation line, which is called Longfumai No. 4, was released in 1987. The procedure of inducting and identifying translocation lines has been raised already. Mature embryos, anthers and young embryos of wheat were irradiated and inoculated as explants. The rude toxin of Bipoloris sorokiniana, as a screening factor, was added to different medi and finally 3 lines with resistance to Bipoloris sorokiniana were selected. It was established that technical system for in-vitro radiation induced mutation and screening wheat mutants of resistance to disease. The biochemical identify methods for mutants have been studied already

Using different classification models in wheat grading utilizing visual features

Science.gov (United States)

Basati, Zahra; Rasekh, Mansour; Abbaspour-Gilandeh, Yousef

2018-04-01

Wheat is one of the most important strategic crops in Iran and in the world. The major component that distinguishes wheat from other grains is the gluten section. In Iran, sunn pest is one of the most important factors influencing the characteristics of wheat gluten and in removing it from a balanced state. The existence of bug-damaged grains in wheat will reduce the quality and price of the product. In addition, damaged grains reduce the enrichment of wheat and the quality of bread products. In this study, after preprocessing and segmentation of images, 25 features including 9 colour features, 10 morphological features, and 6 textual statistical features were extracted so as to classify healthy and bug-damaged wheat grains of Azar cultivar of four levels of moisture content (9, 11.5, 14 and 16.5% w.b.) and two lighting colours (yellow light, the composition of yellow and white lights). Using feature selection methods in the WEKA software and the CfsSubsetEval evaluator, 11 features were chosen as inputs of artificial neural network, decision tree and discriment analysis classifiers. The results showed that the decision tree with the J.48 algorithm had the highest classification accuracy of 90.20%. This was followed by artificial neural network classifier with the topology of 11-19-2 and discrimient analysis classifier at 87.46 and 81.81%, respectively

Comparative assessment of wheat landraces against polyethylene glycol simulated drought stress

International Nuclear Information System (INIS)

Jatoi, S.A.; Latif, M.M.; Arif, M.; Ahson, M.; Siddiqui, S.U.

2014-01-01

Current investigation reports a comparative assessment and relative performance of 10 wheat accessions including check variety Inqilab-91 against polyethylene glycol (PEG) simulated drought stress at seedling. Wheat genotypes were tested against 0, 19, 21, 23 and 25% solutions of PEG 6000. The young seedlings were observed for germination (%) and root length (cm). In general, a decrease in germination percentage was observed with the increase in PEG concentration. All the investigated wheat genotypes performed better than the check variety Inqilab-91. The wheat accession 18699 that had more than 30% surviving seedlings at the highest concentration of used PEG was rated as the tolerant genotype. On the other hand, 18671 and 18698 appeared to be less tolerant having less than 5% germination at 25% PEG. Similarly, the root length decreased with the increase in PEG concentrations. The mean root length of all the wheat accessions, which were studied, was comparatively less affected than the control (Inqilab-91). The wheat genotypes 18670 and 18671 were the better performers than the rest of genotypes investigated and belonged to rainfed area of the Pothowar region. A detailed investigation of these genotypes in the field conditions is suggested. (author)

Improvement of Nutritional and Bread-making Quality of Wheat by Genetic Engineering

OpenAIRE

Alvarez, Maria Lucrecia

2000-01-01

Wheat-derived products provide the basic nutrition for more than a billion of people in the world (about 40% of humankind). Humans consume more proteins from wheat than from any other source. However, the nutritional quality of wheat proteins is limited by the low content of lysine, one of the essential amino acids that we should incorporate through the diet. As part of this thesis work, we obtained transgenic wheat lines expressing the CI-2 gene from barley under the control of a promoter th...

Straw export in continuous winter wheat and the ability of oil radish catch crops and early sowing of wheat to offset soil C and N losses: A simulation study

DEFF Research Database (Denmark)

Peltre, Clément; Nielsen, M; Christensen, Bent Tolstrup

2016-01-01

The export of winter wheat straw for bioenergy may reduce soil C stocks and affect N losses. Establishing fast-growing catch crops between successive wheat crops could potentially offset some of the C and N losses. Another option is to sow wheat earlier, increasing biomass production during...... the autumn. The effects of straw export, oil radish catch crop and early sowing of wheat on soil C storage, N leaching losses and N2O emissions were simulated by applying the Daisy model to winter wheat grown continuously for a period of 100 years on a sandy loam soil in a Danish climate. The simulations....... Inclusion of the oil radish catch crop could offset this loss by 2–3 percentage points. Earlier sowing of wheat increased straw production by 18% and reduced loss of soil C by 3–5 percentage points compared to normal sowing time with full straw export. Catch crops and early sowing also reduced N...

From early farmers to Norman Borlaug - the making of modern wheat.

Science.gov (United States)

Vergauwen, David; De Smet, Ive

2017-09-11

If we wander through the countryside, passing fields of wheat, it is apparent that this crop is reasonably short in stature and that the stems carry large ears. However, this was not always the case. If we take a look at depictions of wheat throughout history, we observe that wheat used to be fairly tall. It was not until the second half of the 20 th century that dwarf wheat varieties started to dominate the agricultural landscape. Underlying this short stature are the Reduced height (Rht) genes, which encode DELLA proteins and which formed the cornerstone of the Green Revolution. Copyright © 2017 Elsevier Ltd. All rights reserved.

Salt tolerance in wheat - an overview. (abstract)

International Nuclear Information System (INIS)

Ashraf, M.

2005-01-01

Considerable efforts have been made during the past few years to overcome the problem of salinity through the development of salt tolerant lines of important crop species using screening, breeding and molecular biology techniques. In view of considerable importance of spring wheat as a major staple food crop of many countries, plant scientists have directed there attention to identify and develop salt tolerant genotypes that can be of direct use on salt-affected soils. Although considerable progress in understanding individual phenomenon and genes involved in plant response to salinity stress has been made over the past few years, underlying physiological mechanisms producing salt tolerant plants is still unclear. It has been suggested that salt tolerance of plants could be improved by defining genes or characters. Twenty years ago, it was suggested that genes located on the D genome of bread wheat confer salinity tolerance to hexaploid wheat by reducing Na/sup +/ accumulation in the leaf tissue and increasing discrimination in favour of K/sup +/. However, recently, low Na/sup +/ accumulation and high K/sup +/Na/sup +/ discrimination, of similar magnitude to bread wheat, in several selections of durum wheat has been observed, supporting the notion that salt tolerance is controlled by multiple genes, which are distributed throughout the entire set of chromosomes. In addition, various physiological selection criteria such as compatible osmolytes (glycinebetaine, proline, trehalose, mannitol etc.), antioxidants, carbon discrimination, high K/sup +//Na/sup +/ ratio etc. have been discussed. Although tolerance to salinity is known to have a multigenic inheritance, mediated by a large number of genes, knowledge of heritability and the genetic mode of salinity tolerance is still lacking because few studies have yet been conducted in these areas. Indeed, genetic information is lagging behind the physiological information. Modern methods such as recombinant DNA technology

Estimation of Water Footprint Compartments in National Wheat Production

Directory of Open Access Journals (Sweden)

B. Ababaei

2016-09-01

Full Text Available Introduction: Water use and pollution have raised to a critical level in many compartments of the world. If humankind is to meet the challenges over the coming fifty years, the agricultural share of water use has to be substantially reduced. In this study, a modern yet simple approach has been proposed through the introduction concept ‘Water Footprint’ (WF. This concept can be used to study the connection between each product and the water allocation to produce that product. This research estimates the green, blue and gray WF of wheat in Iran. Also a new WF compartment (white is used that is related about irrigation water loss. Materials and Methods: The national green (Effective precipitation, blue (Net irrigation requirement, gray (For diluting chemical fertilizers and white (Irrigation water losses water footprints (WF of wheat production were estimated for fifteen major wheat producing provinces of Iran. Evapotranspiration, irrigation requirement, gross irrigation requirement and effective rainfall were got using the AGWAT model. Yields of irrigated and rain-fed lands of each province were got from Iran Agricultural-Jihad Ministry. Another compartment of the wheat production WF is related about the volume of water required to assimilate the fertilizers leached in runoff (gray WF. Moreover, a new concept of white water footprint was proposed here and represents irrigation water losses, which was neglected in the original calculation framework. Finally, the national WF compartments of wheat production were estimated by taking the average of each compartment over all the provinces weighted by the share of each province in total wheat production of the selected provinces. Results and Discussion: In 2006-2012, more than 67% of the national wheat production was irrigated and 32.3% were rain-fed, on average, while 37.9% of the total wheat-cultivated lands were irrigated and 62.1% was rain-fed from more than 6,568 -ha. The total national WF of

Stable isotopes. Enriched wheat: a new chance for nutrition research

International Nuclear Information System (INIS)

Chagvardieff, P.

1996-01-01

The Department of Plant Eco-physiology (DEV) from the CEA/Life Sciences Department of Cadarache (France) has artificially produced two kg of carbon 13 labelled wheat for nutrition research. It is the first successful stable isotope labelling of complex nutriments with a 10% enrichment in carbon 13. This wheat has been used for the manufacturing of pastas to follow the assimilation of nutrients by the organism. This short paper gives some details about the experimental procedure of labelled wheat cultivation. (J.S.)

QTLs for seedling traits under salinity stress in hexaploid wheat

OpenAIRE

Ren, Yongzhe; Xu, Yanhua; Teng, Wan; Li, Bin; Lin, Tongbao

2018-01-01

ABSTRACT: Soil salinity limits agricultural production and is a major obstacle for increasing crop yield. Common wheat is one of the most important crops with allohexaploid characteristic and a highly complex genome. QTL mapping is a useful way to identify genes for quantitative traits such as salinity tolerance in hexaploid wheat. In the present study, a hydroponic trial was carried out to identify quantitative trait loci (QTLs) associated with salinity tolerance of wheat under 150mM NaCl co...

Management Effects On Quality of Organically Grown Winter Wheat

DEFF Research Database (Denmark)

Thomsen, Ingrid Kaag; Schweinzer, A.; Friedel, J. K.

2013-01-01

The potential for improving wheat grain quality by management strategies involving crop rotation, catch crops, and organic manure was tested in organic long-term experiments in Denmark and Austria. Growing grass clover in a four-year rotation resulted in a higher wheat yield increase that could n...

foreign exchange rationing and wheat markets in ethiopia1

African Journals Online (AJOL)

Rahel