Wei, B. G.; Huo, K. X.; Yao, Z. F.; Lou, J.; Li, X. Y.
2018-03-01
It is one of the difficult problems encountered in the research of condition maintenance technology of transformers to recognize partial discharge (PD) pattern. According to the main physical characteristics of PD, three models of oil-paper insulation defects were set up in laboratory to study the PD of transformers, and phase resolved partial discharge (PRPD) was constructed. By using least square method, the grey-scale images of PRPD were constructed and features of each grey-scale image were 28 box dimensions and 28 information dimensions. Affinity propagation algorithm based on manifold distance (AP-MD) for transformers PD pattern recognition was established, and the data of box dimension and information dimension were clustered based on AP-MD. Study shows that clustering result of AP-MD is better than the results of affinity propagation (AP), k-means and fuzzy c-means algorithm (FCM). By choosing different k values of k-nearest neighbor, we find clustering accuracy of AP-MD falls when k value is larger or smaller, and the optimal k value depends on sample size.
Data Stream Clustering With Affinity Propagation
Zhang, Xiangliang; Furtlehner, Cyril; Germain-Renaud, Cecile; Sebag, Michele
2014-01-01
Data stream clustering provides insights into the underlying patterns of data flows. This paper focuses on selecting the best representatives from clusters of streaming data. There are two main challenges: how to cluster with the best representatives and how to handle the evolving patterns that are important characteristics of streaming data with dynamic distributions. We employ the Affinity Propagation (AP) algorithm presented in 2007 by Frey and Dueck for the first challenge, as it offers good guarantees of clustering optimality for selecting exemplars. The second challenging problem is solved by change detection. The presented StrAP algorithm combines AP with a statistical change point detection test; the clustering model is rebuilt whenever the test detects a change in the underlying data distribution. Besides the validation on two benchmark data sets, the presented algorithm is validated on a real-world application, monitoring the data flow of jobs submitted to the EGEE grid.
Data Stream Clustering With Affinity Propagation
Zhang, Xiangliang
2014-07-09
Data stream clustering provides insights into the underlying patterns of data flows. This paper focuses on selecting the best representatives from clusters of streaming data. There are two main challenges: how to cluster with the best representatives and how to handle the evolving patterns that are important characteristics of streaming data with dynamic distributions. We employ the Affinity Propagation (AP) algorithm presented in 2007 by Frey and Dueck for the first challenge, as it offers good guarantees of clustering optimality for selecting exemplars. The second challenging problem is solved by change detection. The presented StrAP algorithm combines AP with a statistical change point detection test; the clustering model is rebuilt whenever the test detects a change in the underlying data distribution. Besides the validation on two benchmark data sets, the presented algorithm is validated on a real-world application, monitoring the data flow of jobs submitted to the EGEE grid.
PANDA: Protein function prediction using domain architecture and affinity propagation.
Wang, Zheng; Zhao, Chenguang; Wang, Yiheng; Sun, Zheng; Wang, Nan
2018-02-22
We developed PANDA (Propagation of Affinity and Domain Architecture) to predict protein functions in the format of Gene Ontology (GO) terms. PANDA at first executes profile-profile alignment algorithm to search against PfamA, KOG, COG, and SwissProt databases, and then launches PSI-BLAST against UniProt for homologue search. PANDA integrates a domain architecture inference algorithm based on the Bayesian statistics that calculates the probability of having a GO term. All the candidate GO terms are pooled and filtered based on Z-score. After that, the remaining GO terms are clustered using an affinity propagation algorithm based on the GO directed acyclic graph, followed by a second round of filtering on the clusters of GO terms. We benchmarked the performance of all the baseline predictors PANDA integrates and also for every pooling and filtering step of PANDA. It can be found that PANDA achieves better performances in terms of area under the curve for precision and recall compared to the baseline predictors. PANDA can be accessed from http://dna.cs.miami.edu/PANDA/ .
Liu, Jianjun; Kan, Jianquan
2018-04-01
In this paper, based on the terahertz spectrum, a new identification method of genetically modified material by support vector machine (SVM) based on affinity propagation clustering is proposed. This algorithm mainly uses affinity propagation clustering algorithm to make cluster analysis and labeling on unlabeled training samples, and in the iterative process, the existing SVM training data are continuously updated, when establishing the identification model, it does not need to manually label the training samples, thus, the error caused by the human labeled samples is reduced, and the identification accuracy of the model is greatly improved.
Defining objective clusters for rabies virus sequences using affinity propagation clustering.
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Susanne Fischer
2018-01-01
Full Text Available Rabies is caused by lyssaviruses, and is one of the oldest known zoonoses. In recent years, more than 21,000 nucleotide sequences of rabies viruses (RABV, from the prototype species rabies lyssavirus, have been deposited in public databases. Subsequent phylogenetic analyses in combination with metadata suggest geographic distributions of RABV. However, these analyses somewhat experience technical difficulties in defining verifiable criteria for cluster allocations in phylogenetic trees inviting for a more rational approach. Therefore, we applied a relatively new mathematical clustering algorythm named 'affinity propagation clustering' (AP to propose a standardized sub-species classification utilizing full-genome RABV sequences. Because AP has the advantage that it is computationally fast and works for any meaningful measure of similarity between data samples, it has previously been applied successfully in bioinformatics, for analysis of microarray and gene expression data, however, cluster analysis of sequences is still in its infancy. Existing (516 and original (46 full genome RABV sequences were used to demonstrate the application of AP for RABV clustering. On a global scale, AP proposed four clusters, i.e. New World cluster, Arctic/Arctic-like, Cosmopolitan, and Asian as previously assigned by phylogenetic studies. By combining AP with established phylogenetic analyses, it is possible to resolve phylogenetic relationships between verifiably determined clusters and sequences. This workflow will be useful in confirming cluster distributions in a uniform transparent manner, not only for RABV, but also for other comparative sequence analyses.
Applications of Affine and Weyl geometry
García-Río, Eduardo; Nikcevic, Stana
2013-01-01
Pseudo-Riemannian geometry is, to a large extent, the study of the Levi-Civita connection, which is the unique torsion-free connection compatible with the metric structure. There are, however, other affine connections which arise in different contexts, such as conformal geometry, contact structures, Weyl structures, and almost Hermitian geometry. In this book, we reverse this point of view and instead associate an auxiliary pseudo-Riemannian structure of neutral signature to certain affine connections and use this correspondence to study both geometries. We examine Walker structures, Riemannia
An Affinity Propagation Clustering Algorithm for Mixed Numeric and Categorical Datasets
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Kang Zhang
2014-01-01
Full Text Available Clustering has been widely used in different fields of science, technology, social science, and so forth. In real world, numeric as well as categorical features are usually used to describe the data objects. Accordingly, many clustering methods can process datasets that are either numeric or categorical. Recently, algorithms that can handle the mixed data clustering problems have been developed. Affinity propagation (AP algorithm is an exemplar-based clustering method which has demonstrated good performance on a wide variety of datasets. However, it has limitations on processing mixed datasets. In this paper, we propose a novel similarity measure for mixed type datasets and an adaptive AP clustering algorithm is proposed to cluster the mixed datasets. Several real world datasets are studied to evaluate the performance of the proposed algorithm. Comparisons with other clustering algorithms demonstrate that the proposed method works well not only on mixed datasets but also on pure numeric and categorical datasets.
Mizuno, Daisuke; Head, David; Ikebe, Emi; Nakamasu, Akiko; Kinoshita, Suguru; Peijuan, Zhang; Ando, Shoji
2013-03-01
Forces are generated heterogeneously in living cells and transmitted through cytoskeletal networks that respond highly non-linearly. Here, we carry out high-bandwidth passive microrheology on vimentin networks reconstituted in vitro, and observe the nonlinear mechanical response due to forces propagating from a local source applied by an optical tweezer. Since the applied force is constant, the gel becomes equilibrated and the fluctuation-dissipation theorem can be employed to deduce the viscoelasticity of the local environment from the thermal fluctuations of colloidal probes. Our experiments unequivocally demonstrate the anisotropic stiffening of the cytoskeletal network behind the applied force, with greater stiffening in the parallel direction. Quantitative agreement with an affine continuum model is obtained, but only for the response at certain frequency ~ 10-1000 Hz which separates the high-frequency power law and low-frequency elastic behavior of the network. We argue that the failure of the model at lower frequencies is due to the presence of non-affinity, and observe that zero-frequency changes in particle separation can be fitted when an independently-measured, empirical nonaffinity factor is applied.
Detection-Guided Fast Affine Projection Channel Estimator for Speech Applications
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Yan Wu Jennifer
2007-04-01
Full Text Available In various adaptive estimation applications, such as acoustic echo cancellation within teleconferencing systems, the input signal is a highly correlated speech. This, in general, leads to extremely slow convergence of the NLMS adaptive FIR estimator. As a result, for such applications, the affine projection algorithm (APA or the low-complexity version, the fast affine projection (FAP algorithm, is commonly employed instead of the NLMS algorithm. In such applications, the signal propagation channel may have a relatively low-dimensional impulse response structure, that is, the number m of active or significant taps within the (discrete-time modelled channel impulse response is much less than the overall tap length n of the channel impulse response. For such cases, we investigate the inclusion of an active-parameter detection-guided concept within the fast affine projection FIR channel estimator. Simulation results indicate that the proposed detection-guided fast affine projection channel estimator has improved convergence speed and has lead to better steady-state performance than the standard fast affine projection channel estimator, especially in the important case of highly correlated speech input signals.
An Extended Affinity Propagation Clustering Method Based on Different Data Density Types
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XiuLi Zhao
2015-01-01
Full Text Available Affinity propagation (AP algorithm, as a novel clustering method, does not require the users to specify the initial cluster centers in advance, which regards all data points as potential exemplars (cluster centers equally and groups the clusters totally by the similar degree among the data points. But in many cases there exist some different intensive areas within the same data set, which means that the data set does not distribute homogeneously. In such situation the AP algorithm cannot group the data points into ideal clusters. In this paper, we proposed an extended AP clustering algorithm to deal with such a problem. There are two steps in our method: firstly the data set is partitioned into several data density types according to the nearest distances of each data point; and then the AP clustering method is, respectively, used to group the data points into clusters in each data density type. Two experiments are carried out to evaluate the performance of our algorithm: one utilizes an artificial data set and the other uses a real seismic data set. The experiment results show that groups are obtained more accurately by our algorithm than OPTICS and AP clustering algorithm itself.
Shi, Lin; Wang, Defeng; Liu, Wen; Fang, Kui; Wang, Yi-Xiang J; Huang, Wenhua; King, Ann D; Heng, Pheng Ann; Ahuja, Anil T
2014-05-01
To automatically and robustly detect the arterial input function (AIF) with high detection accuracy and low computational cost in dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI). In this study, we developed an automatic AIF detection method using an accelerated version (Fast-AP) of affinity propagation (AP) clustering. The validity of this Fast-AP-based method was proved on two DCE-MRI datasets, i.e., rat kidney and human head and neck. The detailed AIF detection performance of this proposed method was assessed in comparison with other clustering-based methods, namely original AP and K-means, as well as the manual AIF detection method. Both the automatic AP- and Fast-AP-based methods achieved satisfactory AIF detection accuracy, but the computational cost of Fast-AP could be reduced by 64.37-92.10% on rat dataset and 73.18-90.18% on human dataset compared with the cost of AP. The K-means yielded the lowest computational cost, but resulted in the lowest AIF detection accuracy. The experimental results demonstrated that both the AP- and Fast-AP-based methods were insensitive to the initialization of cluster centers, and had superior robustness compared with K-means method. The Fast-AP-based method enables automatic AIF detection with high accuracy and efficiency. Copyright © 2013 Wiley Periodicals, Inc.
K-AP: Generating specified K clusters by efficient Affinity Propagation
Zhang, Xiangliang
2010-12-01
The Affinity Propagation (AP) clustering algorithm proposed by Frey and Dueck (2007) provides an understandable, nearly optimal summary of a data set. However, it suffers two major shortcomings: i) the number of clusters is vague with the user-defined parameter called self-confidence, and ii) the quadratic computational complexity. When aiming at a given number of clusters due to prior knowledge, AP has to be launched many times until an appropriate setting of self-confidence is found. The re-launched AP increases the computational cost by one order of magnitude. In this paper, we propose an algorithm, called K-AP, to exploit the immediate results of K clusters by introducing a constraint in the process of message passing. Through theoretical analysis and experimental validation, K-AP was shown to be able to directly generate K clusters as user defined, with a negligible increase of computational cost compared to AP. In the meanwhile, K-AP preserves the clustering quality as AP in terms of the distortion. K-AP is more effective than k-medoids w.r.t. the distortion minimization and higher clustering purity. © 2010 IEEE.
Directory of Open Access Journals (Sweden)
Zhihan Liu
2018-01-01
Full Text Available Car sharing is a type of car rental service, by which consumers rent cars for short periods of time, often charged by hours. The analysis of urban traffic big data is full of importance and significance to determine locations of depots for car-sharing system. Taxi OD (Origin-Destination is a typical dataset of urban traffic. The volume of the data is extremely large so that traditional data processing applications do not work well. In this paper, an optimization method to determine the depot locations by clustering taxi OD points with AP (Affinity Propagation clustering algorithm has been presented. By analyzing the characteristics of AP clustering algorithm, AP clustering has been optimized hierarchically based on administrative region segmentation. Considering sparse similarity matrix of taxi OD points, the input parameters of AP clustering have been adapted. In the case study, we choose the OD pairs information from Beijing’s taxi GPS trajectory data. The number and locations of depots are determined by clustering the OD points based on the optimization AP clustering. We describe experimental results of our approach and compare it with standard K-means method using quantitative and stationarity index. Experiments on the real datasets show that the proposed method for determining car-sharing depots has a superior performance.
Affinity monolith chromatography: A review of general principles and applications.
Li, Zhao; Rodriguez, Elliott; Azaria, Shiden; Pekarek, Allegra; Hage, David S
2017-11-01
Affinity monolith chromatography, or AMC, is a liquid chromatographic method in which the support is a monolith and the stationary phase is a biological-binding agent or related mimic. AMC has become popular for the isolation of biochemicals, for the measurement of various analytes, and for studying biological interactions. This review will examine the principles and applications of AMC. The materials that have been used to prepare AMC columns will be discussed, which have included various organic polymers, silica, agarose, and cryogels. Immobilization schemes that have been used in AMC will also be considered. Various binding agents and applications that have been reported for AMC will then be described. These applications will include the use of AMC for bioaffinity chromatography, immunoaffinity chromatography, dye-ligand affinity chromatography, and immobilized metal-ion affinity chromatography. The use of AMC with chiral stationary phases and as a tool to characterize biological interactions will also be examined. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
Optical vortex beams: Generation, propagation and applications
Cheng, Wen
An optical vortex (also known as a screw dislocation or phase singularity) is one type of optical singularity that has a spiral phase wave front around a singularity point where the phase is undefined. Optical vortex beams have a lot of applications in areas such as optical communications, LADAR (laser detection and ranging) system, optical tweezers, optical trapping and laser beam shaping. The concepts of optical vortex beams and methods of generation are briefly discussed. The properties of optical vortex beams propagating through atmospheric turbulence have been studied. A numerical modeling is developed and validated which has been applied to study the high order properties of optical vortex beams propagating though a turbulent atmosphere. The simulation results demonstrate the advantage that vectorial vortex beams may be more stable and maintain beam integrity better when they propagate through turbulent atmosphere. As one important application of optical vortex beams, the laser beam shaping is introduced and studied. We propose and demonstrate a method to generate a 2D flat-top beam profile using the second order full Poincare beams. Its applications in two-dimensional flat-top beam shaping with spatially variant polarization under low numerical aperture focusing have been studied both theoretically and experimentally. A novel compact flat-top beam shaper based on the proposed method has been designed, fabricated and tested. Experimental results show that high quality flat-top profile can be obtained with steep edge roll-off. The tolerance to different input beam sizes of the beam shaper is also verified in the experimental demonstration. The proposed and experimentally verified LC beam shaper has the potential to become a promising candidate for compact and low-cost flat-top beam shaping in areas such as laser processing/machining, lithography and medical treatment.
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Afaz Uddin Ahmed
2014-01-01
Full Text Available An artificial neural network (ANN and affinity propagation (AP algorithm based user categorization technique is presented. The proposed algorithm is designed for closed access femtocell network. ANN is used for user classification process and AP algorithm is used to optimize the ANN training process. AP selects the best possible training samples for faster ANN training cycle. The users are distinguished by using the difference of received signal strength in a multielement femtocell device. A previously developed directive microstrip antenna is used to configure the femtocell device. Simulation results show that, for a particular house pattern, the categorization technique without AP algorithm takes 5 indoor users and 10 outdoor users to attain an error-free operation. While integrating AP algorithm with ANN, the system takes 60% less training samples reducing the training time up to 50%. This procedure makes the femtocell more effective for closed access operation.
Ahmed, Afaz Uddin; Tariqul Islam, Mohammad; Ismail, Mahamod; Kibria, Salehin; Arshad, Haslina
2014-01-01
An artificial neural network (ANN) and affinity propagation (AP) algorithm based user categorization technique is presented. The proposed algorithm is designed for closed access femtocell network. ANN is used for user classification process and AP algorithm is used to optimize the ANN training process. AP selects the best possible training samples for faster ANN training cycle. The users are distinguished by using the difference of received signal strength in a multielement femtocell device. A previously developed directive microstrip antenna is used to configure the femtocell device. Simulation results show that, for a particular house pattern, the categorization technique without AP algorithm takes 5 indoor users and 10 outdoor users to attain an error-free operation. While integrating AP algorithm with ANN, the system takes 60% less training samples reducing the training time up to 50%. This procedure makes the femtocell more effective for closed access operation. PMID:25133214
APPLICATION OF IMMUNOGLOBULIN-BINDING PROTEINS A, G, L IN THE AFFINITY CHROMATOGRAPHY
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О. V. Sviatenko
2014-04-01
Full Text Available Proteins A, G and L are native or recombinant proteins of microbial origin that bind to mammalian immunoglobulins. Preferably recombinant variants of proteins A, G, L are used in biotechnology for affinity sorbents production. Сomparative characteristics of proteins A, G, L and affinity sorbents on the basis of them, advantages and disadvantages of these proteins application as ligands in the affinity chromatography are done. Analysis of proteins A, G, L properties is presented. Binding specificities and affinities of these proteins differ between species and antibody subclass. Protein А has high affinity to human IgG1, IgG2, IgG4, mouse IgG2a, IgG2b, IgG3, goat and sheep IgG2, dog, cat, guinea pig, rabbit IgG. Protein G binds strongly to human, mouse, cow, goat, sheep and rabbit IgG. Protein L has ability of strong binding to immunoglobulin kappa-chains of human, mouse, rat and pig. Expediency of application of affinity chromatography with usage of sorbents on the basis of immobilized proteins A, G, L are shown for isolation and purification of antibodies different classes. Previously mentioned method is used as an alternative to conventional methods of protein purification, such as ion-exchange, hydrophobic interactions, metal affinity chromatography, ethanol precipitation due to simplicity in usage, possibility of one-step purification process, obtaining of proteins high level purity, multiuse at maintenance of proper storage and usage conditions. Affinity sorbents on the basis of immobilized proteins A, G, L are used not only for antibodies purification, but also for extraction of different antibodies fractions from blood serum.
Application of acoustic radiosity methods to noise propagation within buildings
Muehleisen, Ralph T.; Beamer, C. Walter
2005-09-01
The prediction of sound pressure levels in rooms from transmitted sound is a difficult problem. The sound energy in the source room incident on the common wall must be accurately predicted. In the receiving room, the propagation of sound from the planar wall source must also be accurately predicted. The radiosity method naturally computes the spatial distribution of sound energy incident on a wall and also naturally predicts the propagation of sound from a planar area source. In this paper, the application of the radiosity method to sound transmission problems is introduced and explained.
Hage, David S
2017-06-01
The interactions between biochemical and chemical agents in the body are important in many clinical processes. Affinity chromatography and high-performance affinity chromatography (HPAC), in which a column contains an immobilized biologically related binding agent, are 2 methods that can be used to study these interactions. This review presents various approaches that can be used in affinity chromatography and HPAC to characterize the strength or rate of a biological interaction, the number and types of sites that are involved in this process, and the interactions between multiple solutes for the same binding agent. A number of applications for these methods are examined, with an emphasis on recent developments and high-performance affinity methods. These applications include the use of these techniques for fundamental studies of biological interactions, high-throughput screening of drugs, work with modified proteins, tools for personalized medicine, and studies of drug-drug competition for a common binding agent. The wide range of formats and detection methods that can be used with affinity chromatography and HPAC for examining biological interactions makes these tools attractive for various clinical and pharmaceutical applications. Future directions in the development of small-scale columns and the coupling of these methods with other techniques, such as mass spectrometry or other separation methods, should continue to increase the flexibility and ease with which these approaches can be used in work involving clinical or pharmaceutical samples. © 2016 American Association for Clinical Chemistry.
Report: Affinity Chromatography.
Walters, Rodney R.
1985-01-01
Supports, affinity ligands, immobilization, elution methods, and a number of applications are among the topics considered in this discussion of affinity chromatography. An outline of the basic principles of affinity chromatography is included. (JN)
Applications for a general purpose optical beam propagation code
International Nuclear Information System (INIS)
Munroe, J.L.; Wallace, N.W.
1987-01-01
Real world beam propagation and diffraction problems can rarely be solved by the analytical expressions commonly found in optics and lasers textbooks. These equations are typically valid only for paraxial geometries, for specific boundary conditions (e.g., infinite apertures), or for special assumptions (e.g., at focus). Numerical techniques must be used to solve the equations for the general case. LOTS, a public domain numerical beam propagation software package developed for this purpose, is a widely used and proven tool. The graphical presentation of results combined with a well designed command language make LOTS particularly user-friendly, and the recent implementation of LOTS on the IBM PC/XT family of desktop computes will make this capability available to a much larger group of users. This paper surveys several applications demonstrating the need for such a capability
Adaptive two-regime method: Application to front propagation
Energy Technology Data Exchange (ETDEWEB)
Robinson, Martin, E-mail: martin.robinson@maths.ox.ac.uk; Erban, Radek, E-mail: erban@maths.ox.ac.uk [Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford OX2 6GG (United Kingdom); Flegg, Mark, E-mail: mark.flegg@monash.edu [School of Mathematical Sciences, Faculty of Science, Monash University Wellington Road, Clayton, Victoria 3800 (Australia)
2014-03-28
The Adaptive Two-Regime Method (ATRM) is developed for hybrid (multiscale) stochastic simulation of reaction-diffusion problems. It efficiently couples detailed Brownian dynamics simulations with coarser lattice-based models. The ATRM is a generalization of the previously developed Two-Regime Method [Flegg et al., J. R. Soc., Interface 9, 859 (2012)] to multiscale problems which require a dynamic selection of regions where detailed Brownian dynamics simulation is used. Typical applications include a front propagation or spatio-temporal oscillations. In this paper, the ATRM is used for an in-depth study of front propagation in a stochastic reaction-diffusion system which has its mean-field model given in terms of the Fisher equation [R. Fisher, Ann. Eugen. 7, 355 (1937)]. It exhibits a travelling reaction front which is sensitive to stochastic fluctuations at the leading edge of the wavefront. Previous studies into stochastic effects on the Fisher wave propagation speed have focused on lattice-based models, but there has been limited progress using off-lattice (Brownian dynamics) models, which suffer due to their high computational cost, particularly at the high molecular numbers that are necessary to approach the Fisher mean-field model. By modelling only the wavefront itself with the off-lattice model, it is shown that the ATRM leads to the same Fisher wave results as purely off-lattice models, but at a fraction of the computational cost. The error analysis of the ATRM is also presented for a morphogen gradient model.
Affinity monolith chromatography: A review of principles and recent analytical applications
Pfaunmiller, Erika L.; Paulemond, Marie Laura; Dupper, Courtney M.; Hage, David S.
2012-01-01
Affinity monolith chromatography (AMC) is a type of liquid chromatography that uses a monolithic support and a biologically-related binding agent as a stationary phase. AMC is a powerful method for the selective separation, analysis or studies of specific target compounds in a sample. This review discusses the basic principles of AMC and recent developments or applications of this method, with particular emphasis being given to work that has appeared in the last five years. Various materials that have been used to prepare columns for AMC are examined, including organic monoliths, silica monoliths, agarose monoliths and cryogels. These supports have been used in AMC for formats that have ranged from traditional columns to disks, microcolumns and capillaries. Many binding agents have also been employed in AMC, such as antibodies, enzymes, proteins, lectins, immobilized metal-ions and dyes. Some applications that have been reported with these binding agents in AMC are bioaffinity chromatography, immunoaffinity chromatography or immunoextraction, immobilized metal-ion affinity chromatography, dye-ligand affinity chromatography, chiral separations and biointeraction studies. Examples are presented from fields that include analytical chemistry, pharmaceutical analysis, clinical testing and biotechnology. Current trends and possible future directions in AMC are also discussed. PMID:23187827
Single-Domain Antibodies As Versatile Affinity Reagents for Analytical and Diagnostic Applications
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Gualberto Gonzalez-Sapienza
2017-08-01
Full Text Available With just three CDRs in their variable domains, the antigen-binding site of camelid heavy-chain-only antibodies (HcAbs has a more limited structural diversity than that of conventional antibodies. Even so, this does not seem to limit their specificity and high affinity as HcAbs against a broad range of structurally diverse antigens have been reported. The recombinant form of their variable domain [nanobody (Nb] has outstanding properties that make Nbs, not just an alternative option to conventional antibodies, but in many cases, these properties allow them to reach analytical or diagnostic performances that cannot be accomplished with conventional antibodies. These attributes include comprehensive representation of the immune specificity in display libraries, easy adaptation to high-throughput screening, exceptional stability, minimal size, and versatility as affinity building block. Here, we critically reviewed each of these properties and highlight their relevance with regard to recent developments in different fields of immunosensing applications.
Implementations of back propagation algorithm in ecosystems applications
Ali, Khalda F.; Sulaiman, Riza; Elamir, Amir Mohamed
2015-05-01
Artificial Neural Networks (ANNs) have been applied to an increasing number of real world problems of considerable complexity. Their most important advantage is in solving problems which are too complex for conventional technologies, that do not have an algorithmic solutions or their algorithmic Solutions is too complex to be found. In general, because of their abstraction from the biological brain, ANNs are developed from concept that evolved in the late twentieth century neuro-physiological experiments on the cells of the human brain to overcome the perceived inadequacies with conventional ecological data analysis methods. ANNs have gained increasing attention in ecosystems applications, because of ANN's capacity to detect patterns in data through non-linear relationships, this characteristic confers them a superior predictive ability. In this research, ANNs is applied in an ecological system analysis. The neural networks use the well known Back Propagation (BP) Algorithm with the Delta Rule for adaptation of the system. The Back Propagation (BP) training Algorithm is an effective analytical method for adaptation of the ecosystems applications, the main reason because of their capacity to detect patterns in data through non-linear relationships. This characteristic confers them a superior predicting ability. The BP algorithm uses supervised learning, which means that we provide the algorithm with examples of the inputs and outputs we want the network to compute, and then the error is calculated. The idea of the back propagation algorithm is to reduce this error, until the ANNs learns the training data. The training begins with random weights, and the goal is to adjust them so that the error will be minimal. This research evaluated the use of artificial neural networks (ANNs) techniques in an ecological system analysis and modeling. The experimental results from this research demonstrate that an artificial neural network system can be trained to act as an expert
International Nuclear Information System (INIS)
Lamare, F; Cresson, T; Savean, J; Rest, C Cheze Le; Reader, A J; Visvikis, D
2007-01-01
Respiratory motion is a source of artefacts and reduced image quality in PET. Proposed methodology for correction of respiratory effects involves the use of gated frames, which are however of low signal-to-noise ratio. Therefore a method accounting for respiratory motion effects without affecting the statistical quality of the reconstructed images is necessary. We have implemented an affine transformation of list mode data for the correction of respiratory motion over the thorax. The study was performed using datasets of the NCAT phantom at different points throughout the respiratory cycle. List mode data based PET simulated frames were produced by combining the NCAT datasets with a Monte Carlo simulation. Transformation parameters accounting for respiratory motion were estimated according to an affine registration and were subsequently applied on the original list mode data. The corrected and uncorrected list mode datasets were subsequently reconstructed using the one-pass list mode EM (OPL-EM) algorithm. Comparison of corrected and uncorrected respiratory motion average frames suggests that an affine transformation in the list mode data prior to reconstruction can produce significant improvements in accounting for respiratory motion artefacts in the lungs and heart. However, the application of a common set of transformation parameters across the imaging field of view does not significantly correct the respiratory effects on organs such as the stomach, liver or spleen
Application of propagation calculations in air quality control
International Nuclear Information System (INIS)
Kuelske, S.
1993-01-01
This paper describes the development of a methodics of propagation calculation since the foundation of the 'Landesanstalt fuer Immissionsschutz' in 1963, and its practical use in air quality control. In this context, it deals with methods for calculating stack heights and the Gaussian propagation model adopted by the Technical Code on Clean Air, the propagation of flue gas emitted via cooling towers, the propagation of accidentally released substances, odours and automobile emissions, and with flow and propagation calculation for the proximity zone of buildings as well as for meteorological fields with space and time variations and topographically varied terrain. (orig.) [de
London, Anne Serdakowski; Patel, Kunal; Quinn, Lisa; Lemmerer, Martin
2015-04-01
Coupled affinity liquid chromatography and size exclusion chromatography (ALC-SEC) is a technique that has been shown to successfully report product quality of proteins during cell expression and prior to the commencement of downstream processing chromatography steps. This method was applied to monitoring the degradation and subsequent partial remediation of a HSA-tagged protein which showed proteolysis, allowing for rapid cell line development to address this product quality dilemma. This paper outlines the novel application of this method for measuring and addressing protease-induced proteolysis. Copyright © 2014 Elsevier Inc. All rights reserved.
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Sakellariou Argiris
2012-10-01
Full Text Available Abstract Background A feature selection method in microarray gene expression data should be independent of platform, disease and dataset size. Our hypothesis is that among the statistically significant ranked genes in a gene list, there should be clusters of genes that share similar biological functions related to the investigated disease. Thus, instead of keeping N top ranked genes, it would be more appropriate to define and keep a number of gene cluster exemplars. Results We propose a hybrid FS method (mAP-KL, which combines multiple hypothesis testing and affinity propagation (AP-clustering algorithm along with the Krzanowski & Lai cluster quality index, to select a small yet informative subset of genes. We applied mAP-KL on real microarray data, as well as on simulated data, and compared its performance against 13 other feature selection approaches. Across a variety of diseases and number of samples, mAP-KL presents competitive classification results, particularly in neuromuscular diseases, where its overall AUC score was 0.91. Furthermore, mAP-KL generates concise yet biologically relevant and informative N-gene expression signatures, which can serve as a valuable tool for diagnostic and prognostic purposes, as well as a source of potential disease biomarkers in a broad range of diseases. Conclusions mAP-KL is a data-driven and classifier-independent hybrid feature selection method, which applies to any disease classification problem based on microarray data, regardless of the available samples. Combining multiple hypothesis testing and AP leads to subsets of genes, which classify unknown samples from both, small and large patient cohorts with high accuracy.
Hage, David S.; Anguizola, Jeanethe A.; Bi, Cong; Li, Rong; Matsuda, Ryan; Papastavros, Efthimia; Pfaunmiller, Erika; Vargas, John; Zheng, Xiwei
2012-01-01
Affinity chromatography is a separation technique that has become increasingly important in work with biological samples and pharmaceutical agents. This method is based on the use of a biologically-related agent as a stationary phase to selectively retain analytes or to study biological interactions. This review discusses the basic principles behind affinity chromatography and examines recent developments that have occurred in the use of this method for biomedical and pharmaceutical analysis. Techniques based on traditional affinity supports are discussed, but an emphasis is placed on methods in which affinity columns are used as part of HPLC systems or in combination with other analytical methods. General formats for affinity chromatography that are considered include step elution schemes, weak affinity chromatography, affinity extraction and affinity depletion. Specific separation techniques that are examined include lectin affinity chromatography, boronate affinity chromatography, immunoaffinity chromatography, and immobilized metal ion affinity chromatography. Approaches for the study of biological interactions by affinity chromatography are also presented, such as the measurement of equilibrium constants, rate constants, or competition and displacement effects. In addition, related developments in the use of immobilized enzyme reactors, molecularly imprinted polymers, dye ligands and aptamers are briefly considered. PMID:22305083
Zorzi, Alessandro; Middendorp, Simon J; Wilbs, Jonas; Deyle, Kaycie; Heinis, Christian
2017-07-17
The rapid renal clearance of peptides in vivo limits this attractive platform for the treatment of a broad range of diseases that require prolonged drug half-lives. An intriguing approach for extending peptide circulation times works through a 'piggy-back' strategy in which peptides bind via a ligand to the long-lived serum protein albumin. In accordance with this strategy, we developed an easily synthesized albumin-binding ligand based on a peptide-fatty acid chimera that has a high affinity for human albumin (K d =39 nM). This ligand prolongs the elimination half-life of cyclic peptides in rats 25-fold to over seven hours. Conjugation to a peptide factor XII inhibitor developed for anti-thrombotic therapy extends the half-life from 13 minutes to over five hours, inhibiting coagulation for eight hours in rabbits. This high-affinity albumin ligand could potentially extend the half-life of peptides in human to several days, substantially broadening the application range of peptides as therapeutics.
Zorzi, Alessandro; Middendorp, Simon J.; Wilbs, Jonas; Deyle, Kaycie; Heinis, Christian
2017-07-01
The rapid renal clearance of peptides in vivo limits this attractive platform for the treatment of a broad range of diseases that require prolonged drug half-lives. An intriguing approach for extending peptide circulation times works through a `piggy-back' strategy in which peptides bind via a ligand to the long-lived serum protein albumin. In accordance with this strategy, we developed an easily synthesized albumin-binding ligand based on a peptide-fatty acid chimera that has a high affinity for human albumin (Kd=39 nM). This ligand prolongs the elimination half-life of cyclic peptides in rats 25-fold to over seven hours. Conjugation to a peptide factor XII inhibitor developed for anti-thrombotic therapy extends the half-life from 13 minutes to over five hours, inhibiting coagulation for eight hours in rabbits. This high-affinity albumin ligand could potentially extend the half-life of peptides in human to several days, substantially broadening the application range of peptides as therapeutics.
Institute of Scientific and Technical Information of China (English)
李修亮; 苏宏业; 褚健
2009-01-01
Presented is a multiple model soft sensing method based on Affinity Propagation (AP), Gaussian process (GP) and Bayesian committee machine (BCM). AP clustering arithmetic is used to cluster training samples according to their operating points. Then, the sub-models are estimated by Gaussian Process Regression (GPR). Finally, in order to get a global probabilistic prediction, Bayesian committee machine is used to combine the outputs of the sub-estimators. The proposed method has been applied to predict the light naphtha end point in hydrocracker fractionators. Practical applications indicate that it is useful for the online prediction of quality monitoring in chemi-cal processes.
Gober, Isaiah Nathaniel
This dissertation involves the design and synthesis of new synthetic receptors and their application in the molecular recognition of methylated lysine and their use as tools for chemical biology. The dissertation is divided into four parts. The first section focuses on the development of a novel labeling method that is based on ligand-directed affinity labeling principles. In this labeling method, a synthetic receptor that binds to trimethyl lysine (Kme3) is attached through a linker to an electrophilic tag group that can react with a nucleophilic amine in a histone peptide. This affinity labeling probe, which we called CX4-ONBD, is equipped with an electrophilic tag that allows for turn-on fluorescence labeling of Kme3 histone peitdes. We show that the probe gives a pronounced turn-on fluorescence response when it is incubated with a histone peptide that contains Kme3 and a nearby reactive lysine. This probe also displays >5-fold selectivity in covalent labeling over an unmethylated lysine peptide. This represents the first time a synthetic receptor has been used for affinity labeling purposes, and it also expands on the chemical toolkit that is available for sensing PTMs like lysine methylation. In the second section, the supramolecular affinity labeling method that was optimized using CX4-ONBD was applied to the development of a real-time assay for measuring enzymatic activity. More specifically, the probe was used to create a turn-on fluorescence assay for histone deacetylase (HDAC) activity and for inhibitor screening and IC50 determination. Most commercial kits for HDAC activity have limited substrate scope, and other common methods used for characterizing enzymatic activity often require chromatographic separation and are therefore not high-throughput. This small molecule receptor-mediated affinity labeling strategy allowed for facile readout of HDAC activity and inhibition. Overall, this application of supramolecular affinity labeling expands on the
THz Wave Propagation on Strip Lines: Devices, Properties, and Applications
Directory of Open Access Journals (Sweden)
Y. Kadoya
2008-06-01
Full Text Available We report the propagation characteristics of THz pulses on micro-strip-lines and coplanar strip-lines, in which low permittivity polymer materials are used as the dielectric layer or the substrate. As a result of the low attenuation and small dispersion in the devices, the spectral width up to 3 THz can be achieved even after the 1 mm propagation. Spectroscopic characterizations of liquid or powder specimens are demonstrated using the devices. We also show a possibility of realizing a very low attenuation using a quadrupole mode in three strip coplanar lines on the polymer substrate.
International Nuclear Information System (INIS)
Shang Hao; Kirkham, Perry M.; Myers, Tina M.; Cassell, Gail H.; Lee, Gil U.
2005-01-01
A new method has been developed for measuring the binding affinity of phage displayed peptides and a target protein using magnetic particles. The specific interaction between the phage displayed peptides and the target protein was subject to a force generated by the magnetic particle. The binding affinity was obtained by analyzing the force-bond lifetime
Microwave propagation and remote sensing atmospheric influences with models and applications
Karmakar, Pranab Kumar
2011-01-01
Because prevailing atmospheric/troposcopic conditions greatly influence radio wave propagation above 10 GHz, the unguided propagation of microwaves in the neutral atmosphere can directly impact many vital applications in science and engineering. These include transmission of intelligence, and radar and radiometric applications used to probe the atmosphere, among others. Where most books address either one or the other, Microwave Propagation and Remote Sensing: Atmospheric Influences with Models and Applications melds coverage of these two subjects to help readers develop solutions to the problems they present. This reference offers a brief, elementary account of microwave propagation through the atmosphere and discusses radiometric applications in the microwave band used to characterize and model atmospheric constituents, which is also known as remote sensing. Summarizing the latest research results in the field, as well as radiometric models and measurement methods, this book covers topics including: Free sp...
Propagation and application of waves in the ionosphere.
Yeh, K. C.; Liu, C. H.
1972-01-01
This review deals with the propagation of waves, especially radio waves in the ionosphere. In the macroscopic electromagnetic theory, the mathematical structure of wave propagation problems depends entirely on the properties of the dielectric operator in a magnetically nonpermeable medium. These properties can be deduced from general discussions of symmetry and considerations of physical principles. When the medium is specifically the ionosphere, various physical phenomena may occur. Because of a large number of parameters, it is desirable to define a parameter space. A point in the parameter space corresponds to a specific plasma. The parameter space is subdivided into regions whose boundaries correspond to conditions of resonance and cutoff. As the point crosses these boundaries, the refractive index surface transforms continuously.
Wave propagation in layered anisotropic media with application to composites
Nayfeh, AH
1995-01-01
Recent advances in the study of the dynamic behavior of layered materials in general, and laminated fibrous composites in particular, are presented in this book. The need to understand the microstructural behavior of such classes of materials has brought a new challenge to existing analytical tools. This book explores the fundamental question of how mechanical waves propagate and interact with layered anisotropic media. The chapters are organized in a logical sequence depending upon the complexity of the physical model and its mathematical treatment.
Imaging by forward propagating the data: Theory and application
Zuberi, Akbar
2013-02-27
The forward (modelled) wavefield for conventional reverse time migration (RTM) is computed by extrapolating the wavefield from an estimated source wavelet. In the typical case of a smooth subsurface velocity, this wavefield lacks the components, including surface reflections, necessary to image multiples in the observed data. We, instead, introduce the concept of forward propagating the recorded data, including direct arrivals, as part of RTM. We analyse the influence of the main components of the data on the imaging process, which include direct arrivals, primaries and surface-related multiples. In our RTM methodology, this implies correlating the forward extrapolated recorded data wavefield with its reversely extrapolated version prior to applying the zero-lag cross-correlation imaging condition. The interaction of the data components with each other in the cross-correlation process will image primaries and multiples, as well as introduce cross-talk artefact terms. However, some of these artefacts are present in conventional RTM implementation and they tend to be relatively weak. In fact, for the surface seismic experiment, forward propagating the direct arrivals is almost equivalent to forward propagating a source and it tends to contribute the majority of the data imaging energy. In addition, primaries and multiples recorded in the data become multiples of one higher order. Forward propagating the recorded data to recreate the source will relieve us from the requirement of estimating the source function. It will also include near-surface information necessary to improve the image in areas with near-surface complexity. Data from a simple synthetic layered model, as well as the Marmousi model, are used to demonstrate some of these features. © 2013 European Association of Geoscientists & Engineers.
Whitehurst, Charles E; Annis, D Allen
2008-07-01
Advances in combinatorial chemistry and genomics have inspired the development of novel affinity selection-based screening techniques that rely on mass spectrometry to identify compounds that preferentially bind to a protein target. Of the many affinity selection-mass spectrometry techniques so far documented, only a few solution-based implementations that separate target-ligand complexes away from unbound ligands persist today as routine high throughput screening platforms. Because affinity selection-mass spectrometry techniques do not rely on radioactive or fluorescent reporters or enzyme activities, they can complement traditional biochemical and cell-based screening assays and enable scientists to screen targets that may not be easily amenable to other methods. In addition, by employing mass spectrometry for ligand detection, these techniques enable high throughput screening of massive library collections of pooled compound mixtures, vastly increasing the chemical space that a target can encounter during screening. Of all drug targets, G protein coupled receptors yield the highest percentage of therapeutically effective drugs. In this manuscript, we present the emerging application of affinity selection-mass spectrometry to the high throughput screening of G protein coupled receptors. We also review how affinity selection-mass spectrometry can be used as an analytical tool to guide receptor purification, and further used after screening to characterize target-ligand binding interactions, enabling the classification of orthosteric and allosteric binders.
Hindrances to bistable front propagation: application to Wolbachia invasion.
Nadin, Grégoire; Strugarek, Martin; Vauchelet, Nicolas
2018-05-01
We study the biological situation when an invading population propagates and replaces an existing population with different characteristics. For instance, this may occur in the presence of a vertically transmitted infection causing a cytoplasmic effect similar to the Allee effect (e.g. Wolbachia in Aedes mosquitoes): the invading dynamics we model is bistable. We aim at quantifying the propagules (what does it take for an invasion to start?) and the invasive power (how far can an invading front go, and what can stop it?). We rigorously show that a heterogeneous environment inducing a strong enough population gradient can stop an invading front, which will converge in this case to a stable front. We characterize the critical population jump, and also prove the existence of unstable fronts above the stable (blocking) fronts. Being above the maximal unstable front enables an invading front to clear the obstacle and propagate further. We are particularly interested in the case of artificial Wolbachia infection, used as a tool to fight arboviruses.
Project Integration Architecture: Inter-Application Propagation of Information
Jones, William Henry
2005-01-01
A principal goal of the Project Integration Architecture (PIA) is to facilitate the meaningful inter-application transfer of application-value-added information. Such exchanging applications may be largely unrelated to each other except through their applicability to an overall project; however, the PIA effort recognizes as fundamental the need to make such applications cooperate despite wide disparaties either in the fidelity of the analyses carried out, or even the disciplines of the analysis. This paper discusses the approach and techniques applied and anticipated by the PIA project in treating this need.
Fault detection for piecewise affine systems with application to ship propulsion systems.
Yang, Ying; Linlin, Li; Ding, Steven X; Qiu, Jianbin; Peng, Kaixiang
2017-09-09
In this paper, the design approach of non-synchronized diagnostic observer-based fault detection (FD) systems is investigated for piecewise affine processes via continuous piecewise Lyapunov functions. Considering that the dynamics of piecewise affine systems in different regions can be considerably different, the weighting matrices are used to weight the residual of each region, so as to optimize the fault detectability. A numerical example and a case study on a ship propulsion system are presented in the end to demonstrate the effectiveness of the proposed results. Copyright © 2017 ISA. Published by Elsevier Ltd. All rights reserved.
R-matrix arising from affine Hecke algebras and its application to Macdonald's difference operators
International Nuclear Information System (INIS)
Kato, Shinichi
1994-01-01
We shall give a certain trigonometric R-matrix associated with each root system by using affine Hecke algebras. From this R-matrix, we derive a quantum Knizhnik-Zamolodchikov equation after Cherednik, and show that the solutions of this KZ equation yield eigenfunctions of Macdonald's difference operators. (orig.)
International Nuclear Information System (INIS)
Mueller-Schulte, D.; Daschek, W.
1995-01-01
Carriers modified by synergistic radiation grafting are used as affinity media for the separation of a lectin from a mistletoe extract. The grafted supports show distinctly superior properties when compared to conventional affinity media. The application of these carriers as urease immobilization support incorporated in a conductimetric bioreactor for urea analysis as potential diagnostic device in renal diseases is also described. (Author)
Signal Propagation Delay as a Barrier to Control Applications in WAN
DEFF Research Database (Denmark)
Knudsen, Thomas Phillip; Patel, A.; Pedersen, Jens Myrup
With the advent in WAN of delay sensitive technical applications, such as remote control, signal propagation delay becomes a major problem. The extent of the problem is analysed by lower bounding the delay in relation to different transmission media. Requirements for reliability and bandwidth are...... are considered. The consequences of this bounding for communication network planning and provisioning are discussed in relation to mitigating the effects of signal propagation delay as a barrier to the penetration of control applications into WAN......With the advent in WAN of delay sensitive technical applications, such as remote control, signal propagation delay becomes a major problem. The extent of the problem is analysed by lower bounding the delay in relation to different transmission media. Requirements for reliability and bandwidth...
DEFF Research Database (Denmark)
Engholm-Keller, Kasper; Larsen, Martin R
2011-01-01
biomolecules due to its unique ion and ligand exchange properties and high stability towards pH and temperature. Recently, titanium dioxide chromatography was introduced in proteomics as a highly specific method for enriching phosphorylated peptides - a method, which has been widely adapted by the field...... matrices for further characterization is affinity chromatography, which relies on the specific interaction between an analyte in solution and a solid adsorbent. Titanium dioxide-based affinity chromatography has proven to be a versatile tool in enrichment of various compounds such as phosphorylated....... The development of TiO(2)-based chromatographic strategies for separation of various biomolecules from its introduction for small molecules more than 20years ago until recent proteomics applications today will be reviewed here....
Application of Ni(II-assisted peptide bond hydrolysis to non-enzymatic affinity tag removal.
Directory of Open Access Journals (Sweden)
Edyta Kopera
Full Text Available In this study, we demonstrate a non-enzymatic method for hydrolytic peptide bond cleavage, applied to the removal of an affinity tag from a recombinant fusion protein, SPI2-SRHWAP-His(6. This method is based on a highly specific Ni(II reaction with (S/TXHZ peptide sequences. It can be applied for the protein attached to an affinity column or to the unbound protein in solution. We studied the effect of pH, temperature and Ni(II concentration on the efficacy of cleavage and developed an analytical protocol, which provides active protein with a 90% yield and ∼100% purity. The method works well in the presence of non-ionic detergents, DTT and GuHCl, therefore providing a viable alternative for currently used techniques.
Applications of on-line weak affinity interactions in free solution capillary electrophoresis
DEFF Research Database (Denmark)
Heegaard, Niels H H; Nissen, Mogens H; Chen, David D Y
2002-01-01
The impressive selectivity offered by capillary electrophoresis can in some cases be further increased when ligands or additives that engage in weak affinity interactions with one or more of the separated analytes are added to the electrophoresis buffer. This on-line affinity capillary...... electrophoresis approach is feasible when the migration of complexed molecules is different from the migration of free molecules and when separation conditions are nondenaturing. In this review, we focus on applying weak interactions as tools to enhance the separation of closely related molecules, e.g., drug...... enantiomers and on using capillary electrophoresis to characterize such interactions quantitatively. We describe the equations for binding isotherms, illustrate how selectivity can be manipulated by varying the additive concentrations, and show how the methods may be used to estimate binding constants. On...
Kamakoti, Vikramshankar; Shanmugam, Nandhinee Radha; Tanak, Ambalika Sanjeev; Jagannath, Badrinath; Prasad, Shalini
2018-04-01
Molybdenum (Mo) has been investigated for implementation as an electrode material for affinity based biosensing towards devloping flexibe electronic biosensors. Treatment of the native oxide of molybdenum was investigated through two surface treatment strategies namely thiol and carbodiimide crosslinking methods. The binding interaction between cross-linker molecules and Mo electrode surface has been characterized using Fourier Transform Infrared Spectroscopy (FTIR), X-ray photoelectron spectroscopy (XPS) and optical microscopy. The efficacy of treatment of Mo with its native oxide using carbodiimide cross linking methodology was established. The carbodiimide cross-linking chemistry was found to possess better surface coverage and binding affinity with Molybdenum electrode surface when compared to thiol cross-linking chemistry.Electrochemical characterization of Mo electrode using Electrochemical Impedance Spectroscopy (EIS) and Cyclic Voltametry (CV) techniques was performed to evaluate the effect of ionic properties of solution buffer on the Mo electrode's performance. Affinity based biosensing of C-Reactive Protein (CRP) has been demonstrated on a flexible nanoporous polymeric substrate with detection threshold of 100 pg/ml in synthetic urine buffer medium. The biosensor has been evaluated to be developed as a dipstick based point of care device for detection of biomarkers in urine.
Ostashev, Vladimir E; Wilson, D Keith; Muhlestein, Michael B; Attenborough, Keith
2018-02-01
Although sound propagation in a forest is important in several applications, there are currently no rigorous yet computationally tractable prediction methods. Due to the complexity of sound scattering in a forest, it is natural to formulate the problem stochastically. In this paper, it is demonstrated that the equations for the statistical moments of the sound field propagating in a forest have the same form as those for sound propagation in a turbulent atmosphere if the scattering properties of the two media are expressed in terms of the differential scattering and total cross sections. Using the existing theories for sound propagation in a turbulent atmosphere, this analogy enables the derivation of several results for predicting forest acoustics. In particular, the second-moment parabolic equation is formulated for the spatial correlation function of the sound field propagating above an impedance ground in a forest with micrometeorology. Effective numerical techniques for solving this equation have been developed in atmospheric acoustics. In another example, formulas are obtained that describe the effect of a forest on the interference between the direct and ground-reflected waves. The formulated correspondence between wave propagation in discrete and continuous random media can also be used in other fields of physics.
Directory of Open Access Journals (Sweden)
Greg Hussack
2017-10-01
Full Text Available ABTAG is a camelid single-domain antibody (sdAb that binds to bovine serum albumin (BSA with low picomolar affinity. In surface plasmon resonance (SPR analyses using BSA surfaces, bound ABTAG can be completely dissociated from the BSA surfaces at low pH, over multiple cycles, without any reduction in the capacity of the BSA surfaces to bind ABTAG. A moderate throughput, SPR-based, antibody screening assay exploiting the unique features of ABTAG is described. Anti-carcinoembryonic antigen-related cell adhesion molecule 6 (CEACAM6 sdAbs were isolated from a phage-displayed sdAb library derived from the heavy chain antibody repertoire of a llama immunized with CEACAM6. Following one or two rounds of panning, enriched clones were expressed as ABTAG fusions in microtiter plate cultures. The sdAb-ABTAG fusions from culture supernatants were captured on BSA surfaces and CEACAM6 antigen was then bound to the captured molecules. The SPR screening method gives a read-out of relative expression levels of the fusion proteins and kinetic and affinity constants for CEACAM6 binding by the captured molecules. The library was also panned and screened by conventional methods and positive clones were subcloned and expressed for SPR analysis. Compared to conventional panning and screening, the SPR-based ABTAG method yielded a considerably higher diversity of binders, some with affinities that were three orders of magnitude higher affinity than those identified by conventional panning.
Espinosa Tomás, Julián; Pérez Rodríguez, Jorge; Mas Candela, David; Illueca Contri, Carlos; Sala Pomares, Esperanza; Ortiz Márquez, Dolores; Alió y Sanz, Jorge L.
2006-01-01
Trabajo presentado en el 3rd European Meeting in Physiological Optics, London, September 7-9, 2006. Transmittance evaluation of cornea. Transmittance evaluation of crystalline lens. Wave propagation (angular spectrum) up to the plane of interest. Applications to presbylasik surgery analysis.
2014-01-01
We propose a smooth approximation l 0-norm constrained affine projection algorithm (SL0-APA) to improve the convergence speed and the steady-state error of affine projection algorithm (APA) for sparse channel estimation. The proposed algorithm ensures improved performance in terms of the convergence speed and the steady-state error via the combination of a smooth approximation l 0-norm (SL0) penalty on the coefficients into the standard APA cost function, which gives rise to a zero attractor that promotes the sparsity of the channel taps in the channel estimation and hence accelerates the convergence speed and reduces the steady-state error when the channel is sparse. The simulation results demonstrate that our proposed SL0-APA is superior to the standard APA and its sparsity-aware algorithms in terms of both the convergence speed and the steady-state behavior in a designated sparse channel. Furthermore, SL0-APA is shown to have smaller steady-state error than the previously proposed sparsity-aware algorithms when the number of nonzero taps in the sparse channel increases. PMID:24790588
International Nuclear Information System (INIS)
Wang Qiang; Guan Yueping; Yang Mingzhu
2012-01-01
The superparamagnetic poly-(MA–DVB) microspheres with micron size were synthesized by the modified suspension polymerization method. Adsorption of glutathione by magnetic poly-(MA–DVB) microspheres with IDA-copper was investigated. The effect of solution pH value, affinity adsorption and desorption of glutathione was studied. The results showed that the optimum pH value for glutathione adsorption was found at pH=3.5, the maximum capacity for glutathione of magnetic poly-(MA–DVB) microspheres was estimated at 42.4 mg/g by fitting the experimental data to the Langmuir equation. The adsorption equilibrium of glutathione was obtained in about 10 min and the adsorbed glutathione was desorbed from the magnetic microspheres in about 30 min using NaCl buffer solution. The magnetic microspheres could be repeatedly utilized for the affinity adsorption of glutathione. - Highlights: ► The magnetic microsphere with surface IDA–Cu groups was synthesized. ► The magnetic microspheres were applied for adsorption of GSH. ► The adsorption–desorption of glutathione was investigated. ► The maximum adsorption capacity of GSH was fitted at 42.4 mg/g.
Directory of Open Access Journals (Sweden)
Avi Karsenty
2017-01-01
Full Text Available Phase measurements obtained by high-coherence interferometry are restricted by the 2π ambiguity, to height differences smaller than λ/2. A further restriction in most interferometric systems is for focusing the system on the measured object. We present two methods that overcome these restrictions. In the first method, different segments of a measured wavefront are digitally propagated and focused locally after measurement. The divergent distances, by which the diverse segments of the wavefront are propagated in order to achieve a focused image, provide enough information so as to resolve the 2π ambiguity. The second method employs an interferogram obtained by a spectrum constituting a small number of wavelengths. The magnitude of the interferogram’s modulations is utilized to resolve the 2π ambiguity. Such methods of wavefront propagation enable several applications such as focusing and resolving the 2π ambiguity, as described in the article.
Heegaard, Niels H H
2009-06-01
The journal Electrophoresis has greatly influenced my approaches to biomolecular affinity studies. The methods that I have chosen as my main tools to study interacting biomolecules--native gel and later capillary zone electrophoresis--have been the topic of numerous articles in Electrophoresis. Below, the role of the journal in the development and dissemination of these techniques and applications reviewed. Many exhaustive reviews on affinity electrophoresis and affinity CE have been published in the last few years and are not in any way replaced by the present deliberations that are focused on papers published by the journal.
Prediction Governors for Input-Affine Nonlinear Systems and Application to Automatic Driving Control
Directory of Open Access Journals (Sweden)
Yuki Minami
2018-04-01
Full Text Available In recent years, automatic driving control has attracted attention. To achieve a satisfactory driving control performance, the prediction accuracy of the traveling route is important. If a highly accurate prediction method can be used, an accurate traveling route can be obtained. Despite the considerable efforts that have been invested in improving prediction methods, prediction errors do occur in general. Thus, a method to minimize the influence of prediction errors on automatic driving control systems is required. This need motivated us to focus on the design of a mechanism for shaping prediction signals, which is called a prediction governor. In this study, we first extended our previous study to the input-affine nonlinear system case. Then, we analytically derived a solution to an optimal design problem of prediction governors. Finally, we applied the solution to an automatic driving control system, and demonstrated its usefulness through a numerical example and an experiment using a radio controlled car.
Sooter, Letha J.; Stratis-Cullum, Dimitra N.; Zhang, Yanting; Daugherty, Patrick S.; Soh, H. Tom; Pellegrino, Paul; Stagliano, Nancy
2007-09-01
Immunochromatography is a rapid, reliable, and cost effective method of detecting biowarfare agents. The format is similar to that of an over-the-counter pregnancy test. A sample is applied to one end of a cassette and then a control line, and possibly a sample line, are visualized at the other end of the cassette. The test is based upon a sandwich assay. For the control, a line of Protein A is immobilized on the membrane. Gold nanoparticle bound IgG flows through the membrane and binds the Protein A, creating a visible line on the membrane. For the sample, one epitope is immobilized on the membrane and another epitope is attached to gold nanoparticles. The sample binds gold bound epitope, travels through the membrane, and binds membrane bound epitope. The two epitopes are not cross-reactive, therefore a sample line is only visible if the sample is present. In order to efficiently screen for binders to a sample target, a novel, Continuous Magnetic Activated Cell Sorter (CMACS) has been developed on a disposable, microfluidic platform. The CMACS chip quickly sorts E. coli peptide libraries for target binders with high affinity. Peptide libraries, are composed of approximately ten million bacteria, each displaying a different peptide on their surface. The target of interest is conjugated to a micrometer sized magnetic particle. After the library and the target are incubated together to allow binding, the mixture is applied to the CMACS chip. In the presence of patterned nickel and an external magnet, separation occurs of the bead-bound bacteria from the bulk material. The bead fraction is added to bacterial growth media where any attached E. coli grow and divide. These cells are cloned, sequenced, and the peptides are assayed for target binding affinity. As a proof-of-principle, assays were developed for human C-reactive protein. More defense relevant targets are currently being pursued.
Efficient techniques for wave-based sound propagation in interactive applications
Mehra, Ravish
Sound propagation techniques model the effect of the environment on sound waves and predict their behavior from point of emission at the source to the final point of arrival at the listener. Sound is a pressure wave produced by mechanical vibration of a surface that propagates through a medium such as air or water, and the problem of sound propagation can be formulated mathematically as a second-order partial differential equation called the wave equation. Accurate techniques based on solving the wave equation, also called the wave-based techniques, are too expensive computationally and memory-wise. Therefore, these techniques face many challenges in terms of their applicability in interactive applications including sound propagation in large environments, time-varying source and listener directivity, and high simulation cost for mid-frequencies. In this dissertation, we propose a set of efficient wave-based sound propagation techniques that solve these three challenges and enable the use of wave-based sound propagation in interactive applications. Firstly, we propose a novel equivalent source technique for interactive wave-based sound propagation in large scenes spanning hundreds of meters. It is based on the equivalent source theory used for solving radiation and scattering problems in acoustics and electromagnetics. Instead of using a volumetric or surface-based approach, this technique takes an object-centric approach to sound propagation. The proposed equivalent source technique generates realistic acoustic effects and takes orders of magnitude less runtime memory compared to prior wave-based techniques. Secondly, we present an efficient framework for handling time-varying source and listener directivity for interactive wave-based sound propagation. The source directivity is represented as a linear combination of elementary spherical harmonic sources. This spherical harmonic-based representation of source directivity can support analytical, data
Understanding the Physical Optics Phenomena by Using a Digital Application for Light Propagation
International Nuclear Information System (INIS)
Sierra-Sosa, Daniel-Esteban; Angel-Toro, Luciano
2011-01-01
Understanding the light propagation on the basis of the Huygens-Fresnel principle stands for a fundamental factor for deeper comprehension of different physical optics related phenomena like diffraction, self-imaging, image formation, Fourier analysis and spatial filtering. This constitutes the physical approach of the Fourier optics whose principles and applications have been developed since the 1950's. Both for analytical and digital applications purposes, light propagation can be formulated in terms of the Fresnel Integral Transform. In this work, a digital optics application based on the implementation of the Discrete Fresnel Transform (DFT), and addressed to serve as a tool for applications in didactics of optics is presented. This tool allows, at a basic and intermediate learning level, exercising with the identification of basic phenomena, and observing changes associated with modifications of physical parameters. This is achieved by using a friendly graphic user interface (GUI). It also assists the user in the development of his capacity for abstracting and predicting the characteristics of more complicated phenomena. At an upper level of learning, the application could be used to favor a deeper comprehension of involved physics and models, and experimenting with new models and configurations. To achieve this, two characteristics of the didactic tool were taken into account when designing it. First, all physical operations, ranging from simple diffraction experiments to digital holography and interferometry, were developed on the basis of the more fundamental concept of light propagation. Second, the algorithm was conceived to be easily upgradable due its modular architecture based in MATLAB (registered) software environment. Typical results are presented and briefly discussed in connection with didactics of optics.
Understanding the Physical Optics Phenomena by Using a Digital Application for Light Propagation
Energy Technology Data Exchange (ETDEWEB)
Sierra-Sosa, Daniel-Esteban; Angel-Toro, Luciano, E-mail: dsierras@eafit.edu.co, E-mail: langel@eafit.edu.co [Grupo de Optica Aplicada, Universidad EAFIT, 1 Medellin (Colombia)
2011-01-01
Understanding the light propagation on the basis of the Huygens-Fresnel principle stands for a fundamental factor for deeper comprehension of different physical optics related phenomena like diffraction, self-imaging, image formation, Fourier analysis and spatial filtering. This constitutes the physical approach of the Fourier optics whose principles and applications have been developed since the 1950's. Both for analytical and digital applications purposes, light propagation can be formulated in terms of the Fresnel Integral Transform. In this work, a digital optics application based on the implementation of the Discrete Fresnel Transform (DFT), and addressed to serve as a tool for applications in didactics of optics is presented. This tool allows, at a basic and intermediate learning level, exercising with the identification of basic phenomena, and observing changes associated with modifications of physical parameters. This is achieved by using a friendly graphic user interface (GUI). It also assists the user in the development of his capacity for abstracting and predicting the characteristics of more complicated phenomena. At an upper level of learning, the application could be used to favor a deeper comprehension of involved physics and models, and experimenting with new models and configurations. To achieve this, two characteristics of the didactic tool were taken into account when designing it. First, all physical operations, ranging from simple diffraction experiments to digital holography and interferometry, were developed on the basis of the more fundamental concept of light propagation. Second, the algorithm was conceived to be easily upgradable due its modular architecture based in MATLAB (registered) software environment. Typical results are presented and briefly discussed in connection with didactics of optics.
Understanding the Physical Optics Phenomena by Using a Digital Application for Light Propagation
Sierra-Sosa, Daniel-Esteban; Ángel-Toro, Luciano
2011-01-01
Understanding the light propagation on the basis of the Huygens-Fresnel principle stands for a fundamental factor for deeper comprehension of different physical optics related phenomena like diffraction, self-imaging, image formation, Fourier analysis and spatial filtering. This constitutes the physical approach of the Fourier optics whose principles and applications have been developed since the 1950's. Both for analytical and digital applications purposes, light propagation can be formulated in terms of the Fresnel Integral Transform. In this work, a digital optics application based on the implementation of the Discrete Fresnel Transform (DFT), and addressed to serve as a tool for applications in didactics of optics is presented. This tool allows, at a basic and intermediate learning level, exercising with the identification of basic phenomena, and observing changes associated with modifications of physical parameters. This is achieved by using a friendly graphic user interface (GUI). It also assists the user in the development of his capacity for abstracting and predicting the characteristics of more complicated phenomena. At an upper level of learning, the application could be used to favor a deeper comprehension of involved physics and models, and experimenting with new models and configurations. To achieve this, two characteristics of the didactic tool were taken into account when designing it. First, all physical operations, ranging from simple diffraction experiments to digital holography and interferometry, were developed on the basis of the more fundamental concept of light propagation. Second, the algorithm was conceived to be easily upgradable due its modular architecture based in MATLAB® software environment. Typical results are presented and briefly discussed in connection with didactics of optics.
Applicability assessment of plug weld to ITER vacuum vessel by crack propagation analysis
International Nuclear Information System (INIS)
Ohmori, Junji; Nakahira, Masataka; Takeda, Nobukazu; Shibanuma, Kiyoshi; Sago, Hiromi; Onozuka, Masanori
2006-03-01
In order to improve the fabricability of the vacuum vessel (VV) of International Thermonuclear Experimental Reactor (ITER), applicability of plug weld between VV outer shell and stiffening ribs/blanket support housings has been assessed using crack propagation analysis for the plug weld. The ITER VV is a double-wall structure of inner and outer shells with ribs and housings between the shells. For the fabrication of VV, ribs and housings are welded to outer shell after welding to inner shell. A lot of weld grooves should be adjusted for welding outer shell. The plug weld is that outer shells with slit at the weld region are set on ribs/housings then outer shells are welded to them by filling the slits with weld metal. The plug weld can allow larger tolerance of weld groove gap than ordinary butt weld. However, un-welded lengths parallel to outer sell surface remain in the plug weld region. It is necessary to evaluate the allowable un-welded length to apply the plug weld to ITER VV fabrication. For the assessment, the allowable un-welded lengths have been calculated by crack propagation analyses for load conditions, conservatively assuming the un-welded region is a crack. In the analyses, firstly allowable crack lengths are calculated from the stresses of the weld region. Then assuming initial crack length, crack propagation is calculated during operation period. Allowable initial crack lengths are determined on the condition that the propagated cracks should not exceed the allowable crack lengths. The analyses have been carried out for typical inboard straight region and inboard upper curved region with the maximum housing stress. The allowable initial cracks of ribs are estimated to be 8.8mm and 38mm for the rib and the housing, respectively, considering inspection error of 4.4mm. Plug weld between outer shell and ribs/housings could be applicable. (author)
CSIR Research Space (South Africa)
Shatalov, M
2012-09-01
Full Text Available are transformed into systems of ordinary differential equations with initial conditions. This reduction is obtained by means of application of particular finite difference schemes to the spatial derivatives. Many of the wave propagation problems describing...
De Souza, Colin P; Hashmi, Shahr B; Osmani, Aysha H; Osmani, Stephen A
2014-01-01
Filamentous fungi occupy critical environmental niches and have numerous beneficial industrial applications but devastating effects as pathogens and agents of food spoilage. As regulators of essentially all biological processes protein kinases have been intensively studied but how they regulate the often unique biology of filamentous fungi is not completely understood. Significant understanding of filamentous fungal biology has come from the study of the model organism Aspergillus nidulans using a combination of molecular genetics, biochemistry, cell biology and genomic approaches. Here we describe dual localization-affinity purification (DLAP) tags enabling endogenous N or C-terminal protein tagging for localization and biochemical studies in A. nidulans. To establish DLAP tag utility we endogenously tagged 17 protein kinases for analysis by live cell imaging and affinity purification. Proteomic analysis of purifications by mass spectrometry confirmed association of the CotA and NimXCdk1 kinases with known binding partners and verified a predicted interaction of the SldABub1/R1 spindle assembly checkpoint kinase with SldBBub3. We demonstrate that the single TOR kinase of A. nidulans locates to vacuoles and vesicles, suggesting that the function of endomembranes as major TOR cellular hubs is conserved in filamentous fungi. Comparative analysis revealed 7 kinases with mitotic specific locations including An-Cdc7 which unexpectedly located to mitotic spindle pole bodies (SPBs), the first such localization described for this family of DNA replication kinases. We show that the SepH septation kinase locates to SPBs specifically in the basal region of apical cells in a biphasic manner during mitosis and again during septation. This results in gradients of SepH between G1 SPBs which shift along hyphae as each septum forms. We propose that SepH regulates the septation initiation network (SIN) specifically at SPBs in the basal region of G1 cells and that localized gradients
International Nuclear Information System (INIS)
Dattoli, G.; Torre, A.; Mancho, A.M.
2000-01-01
The theory of generalized Bessel functions has found significant applications in the analysis of radiation phenomena, associated with charges moving in magnetic devices. In this paper we exploit the monomiality principle to discuss the theory of two-variable Laguerre polynomials and introduce the associated Laguerre-Bessel functions. We study their properties (addition and multiplication theorems, generating function, recurrence relations and so on) and discuss the link with the ordinary case. The usefulness of the obtained results to treat problems relevant to the paraxial propagation of electromagnetic waves is also discussed.
Lamb, George L
1995-01-01
INTRODUCTORY APPLICATIONS OF PARTIAL DIFFERENTIAL EQUATIONS. With Emphasis on Wave Propagation and Diffusion. This is the ideal text for students and professionals who have some familiarity with partial differential equations, and who now wish to consolidate and expand their knowledge. Unlike most other texts on this topic, it interweaves prior knowledge of mathematics and physics, especially heat conduction and wave motion, into a presentation that demonstrates their interdependence. The result is a superb teaching text that reinforces the reader's understanding of both mathematics and physic
Schrager, D.F.
2006-01-01
We propose a new model for stochastic mortality. The model is based on the literature on affine term structure models. It satisfies three important requirements for application in practice: analytical tractibility, clear interpretation of the factors and compatibility with financial option pricing
Acar, T.; Lauter, K.; Naehrig, M.; Shumow, D.
2011-01-01
Pairings on elliptic curves are being used in an increasing number of cryptographic applications on many different devices and platforms, but few performance numbers for cryptographic pairings have been reported on embedded and mobile devices. In this paper we give performance numbers for affine and
Analyzing Grid Log Data with Affinity Propagation
Modena, G.; van Someren, M.W.; Ali, M; Bosse, T.; Hindriks, K.V.; Hoogendoorn, M.; Jonker, C.M; Treur, J.
2013-01-01
In this paper we present an unsupervised learning approach to detect meaningful job traffic patterns in Grid log data. Manual anomaly detection on modern Grid environments is troublesome given their increasing complexity, the distributed, dynamic topology of the network and heterogeneity of the jobs
Fundamentals of affinity cell separations.
Zhang, Ye; Lyons, Veronica; Pappas, Dimitri
2018-03-01
Cell separations using affinity methods continue to be an enabling science for a wide variety of applications. In this review, we discuss the fundamental aspects of affinity separation, including the competing forces for cell capture and elution, cell-surface interactions, and models for cell adhesion. Factors affecting separation performance such as bond affinity, contact area, and temperature are presented. We also discuss and demonstrate the effects of nonspecific binding on separation performance. Metrics for evaluating cell separations are presented, along with methods of comparing separation techniques for cell isolation using affinity capture. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
Manfreda, G.; Bajas, H.; Perez, J.C.
2016-01-01
To improve the technology of the new generation of accelerator magnets, prototypes are being manufactured and tested in several laboratories. In parallel, many numerical analyses are being carried out to predict the magnets behaviour and interpret the experimental results. This paper focuses on the quench propagation velocity, which is a crucial parameter as regards the energy dissipation along the magnet conductor. The THELMA code, originally developed for cable-in-conduit conductors for fusion magnets, has been used to study such quench propagation. To this purpose, new code modules have been added to describe the Rutherford cable geometry, the material non-linear thermal properties and to describe the thermal conduction problem in transient regime. THELMA can describe the Rutherford cable at the strand level, modelling both the electrical and thermal contact resistances between strands and enabling the analysis of the effects of local hot spots and quench heaters. This paper describes the model application...
International Nuclear Information System (INIS)
Mullor, R.; Sanchez, A.; Martorell, S.; Martinez-Alzamora, N.
2011-01-01
Safety related systems performance optimization is classically based on quantifying the effects that testing and maintenance activities have on reliability and cost (R+C). However, R+C quantification is often incomplete in the sense that important uncertainties may not be considered. An important number of studies have been published in the last decade in the field of R+C based optimization considering uncertainties. They have demonstrated that inclusion of uncertainties in the optimization brings the decision maker insights concerning how uncertain the R+C results are and how this uncertainty does matter as it can result in differences in the outcome of the decision making process. Several methods of uncertainty propagation based on the theory of tolerance regions have been proposed in the literature depending on the particular characteristics of the variables in the output and their relations. In this context, the objective of this paper focuses on the application of non-parametric and parametric methods to analyze uncertainty propagation, which will be implemented on a multi-objective optimization problem where reliability and cost act as decision criteria and maintenance intervals act as decision variables. Finally, a comparison of results of these applications and the conclusions obtained are presented.
Energy Technology Data Exchange (ETDEWEB)
Darula, Stanislav; Kocifaj, Miroslav; Kittler, Richard [ICA, Slovak Academy of Sciences, Bratislava (Slovakia); Kundracik, Frantisek [Department of Experimental Physics, FMPI, Comenius University, Bratislava (Slovakia)
2010-12-15
To ensure comfort and healthy conditions in interior spaces the thermal, acoustics and daylight factors of the environment have to be considered in the building design. Due to effective energy performance in buildings the new technology and applications also in daylight engineering are sought such as tubular light guides. These allow the transport of natural light into the building core reducing energy consumption. A lot of installations with various geometrical and optical properties can be applied in real buildings. The simplest set of tubular light guide consists of a transparent cupola, direct tube with high reflected inner surface and a ceiling cover or diffuser redistributing light into the interior. Such vertical tubular guide is often used on flat roofs. When the roof construction is inclined a bend in the light guide system has to be installed. In this case the cupola is set on the sloped roof which collects sunlight and skylight from the seen part of the sky hemisphere as well as that reflected from the ground and opposite facades. In comparison with the vertical tube some additional light losses and distortions of the propagated light have to be expected in bended tubular light guides. Recently the theoretical model of light propagation was already published and its applications are presented in this study solving illuminance distributions on the ceiling cover interface and further illuminance distribution on the working plane in the interior. (author)
Energy Technology Data Exchange (ETDEWEB)
Mullor, R. [Dpto. Estadistica e Investigacion Operativa, Universidad Alicante (Spain); Sanchez, A., E-mail: aisanche@eio.upv.e [Dpto. Estadistica e Investigacion Operativa Aplicadas y Calidad, Universidad Politecnica Valencia, Camino de Vera s/n 46022 (Spain); Martorell, S. [Dpto. Ingenieria Quimica y Nuclear, Universidad Politecnica Valencia (Spain); Martinez-Alzamora, N. [Dpto. Estadistica e Investigacion Operativa Aplicadas y Calidad, Universidad Politecnica Valencia, Camino de Vera s/n 46022 (Spain)
2011-06-15
Safety related systems performance optimization is classically based on quantifying the effects that testing and maintenance activities have on reliability and cost (R+C). However, R+C quantification is often incomplete in the sense that important uncertainties may not be considered. An important number of studies have been published in the last decade in the field of R+C based optimization considering uncertainties. They have demonstrated that inclusion of uncertainties in the optimization brings the decision maker insights concerning how uncertain the R+C results are and how this uncertainty does matter as it can result in differences in the outcome of the decision making process. Several methods of uncertainty propagation based on the theory of tolerance regions have been proposed in the literature depending on the particular characteristics of the variables in the output and their relations. In this context, the objective of this paper focuses on the application of non-parametric and parametric methods to analyze uncertainty propagation, which will be implemented on a multi-objective optimization problem where reliability and cost act as decision criteria and maintenance intervals act as decision variables. Finally, a comparison of results of these applications and the conclusions obtained are presented.
DEFF Research Database (Denmark)
Guglielmi, Michel; Johannesen, Hl
2004-01-01
, Essex, Hertfordshire, Norfolk and Suffolk. Research found that there was a lack of identity or sense of belonging and nothing anchoring people to the region as a whole. Common affinity is somehow forced to the people of East England and thereby we came to the conclusion that a single landmark...... and potential situations but also virtual events that calls for an undeterminated process of resolution. This process is activated by the user who co-produces the actualisation as an answer to a virtual reality that we defined at the first place. The potential situations or the possible it is a fantomatic real....... The possible is like the real. It is determinated and it only lakes existence. While the possible is already made, the virtual is like a problematic which needs to be resolved and actualized. Our installations are based on high tech interactivity where we use sensors and remote communication to offer a sense...
International Nuclear Information System (INIS)
Picard, R.R.
1989-01-01
Topics covered in this chapter include a discussion of exact results as related to nuclear materials management and accounting in nuclear facilities; propagation of error for a single measured value; propagation of error for several measured values; error propagation for materials balances; and an application of error propagation to an example of uranium hexafluoride conversion process
Cryopreservation techniques and their application in vegetatively propagated crop plants in Finland
Directory of Open Access Journals (Sweden)
A. NUKARI
2008-12-01
Full Text Available Cryopreservation protocols have been introduced as techniques for germplasm preservation of vegetatively propagated horticultural and staple food crops. In Finland, cryopreservation has been studied since 1990s, beginning with cryopreservation of forest tree breeding material and since 2004 on cryopreservation of genetic resources of horticultural plants and potato. Priority was given to cryopreservation of raspberry (Rubus ideaus L., strawberry (Fragaria x ananassa Duch. and potato (Solanum tuberosum L. and the possibility to use cryotherapy in eradication of raspberry bushy dwarf virus (RBDV from in vitro cultures were studied on raspberry. Modified droplet vitrification cryopreservation protocols were designed for raspberry and strawberry and cryotherapy combined with thermotherapy was proven to be a successful application to eliminate RBDV from infected raspberries. Cryotherapy method can be applied for a large scale elimination of viruses from plant germplasm and from candidate nuclear stock in a certified plant production scheme. Routine use of cryotechniques in germplasm preservation of vegetatively propagated horticultural plants was started. Besides for long term germplasm preservation, cryopreservation techniques can be applied also for maintenance of mother stocks in certified plant production schemes and in commercial plant production. Cryopreservation of potato shoot tips needs additional detailed research to obtain sufficient recovery and regrowth rates.;
Shetty, Dinesh; Khedkar, Jayshree K; Park, Kyeng Min; Kim, Kimoon
2015-12-07
The design of synthetic, monovalent host-guest molecular recognition pairs is still challenging and of particular interest to inquire into the limits of the affinity that can be achieved with designed systems. In this regard, cucurbit[7]uril (CB[7]), an important member of the host family cucurbit[n]uril (CB[n], n = 5-8, 10, 14), has attracted much attention because of its ability to form ultra-stable complexes with multiple guests. The strong hydrophobic effect between the host cavity and guests, ion-dipole and dipole-dipole interactions of guests with CB portals helps in cooperative and multiple noncovalent interactions that are essential for realizing such strong complexations. These highly selective, strong yet dynamic interactions can be exploited in many applications including affinity chromatography, biomolecule immobilization, protein isolation, biological catalysis, and sensor technologies. In this review, we summarize the progress in the development of high affinity guests for CB[7], factors affecting the stability of complexes, theoretical insights, and the utility of these high affinity pairs in different challenging applications.
Parallel Reservoir Simulations with Sparse Grid Techniques and Applications to Wormhole Propagation
Wu, Yuanqing
2015-09-08
In this work, two topics of reservoir simulations are discussed. The first topic is the two-phase compositional flow simulation in hydrocarbon reservoir. The major obstacle that impedes the applicability of the simulation code is the long run time of the simulation procedure, and thus speeding up the simulation code is necessary. Two means are demonstrated to address the problem: parallelism in physical space and the application of sparse grids in parameter space. The parallel code can gain satisfactory scalability, and the sparse grids can remove the bottleneck of flash calculations. Instead of carrying out the flash calculation in each time step of the simulation, a sparse grid approximation of all possible results of the flash calculation is generated before the simulation. Then the constructed surrogate model is evaluated to approximate the flash calculation results during the simulation. The second topic is the wormhole propagation simulation in carbonate reservoir. In this work, different from the traditional simulation technique relying on the Darcy framework, we propose a new framework called Darcy-Brinkman-Forchheimer framework to simulate wormhole propagation. Furthermore, to process the large quantity of cells in the simulation grid and shorten the long simulation time of the traditional serial code, standard domain-based parallelism is employed, using the Hypre multigrid library. In addition to that, a new technique called “experimenting field approach” to set coefficients in the model equations is introduced. In the 2D dissolution experiments, different configurations of wormholes and a series of properties simulated by both frameworks are compared. We conclude that the numerical results of the DBF framework are more like wormholes and more stable than the Darcy framework, which is a demonstration of the advantages of the DBF framework. The scalability of the parallel code is also evaluated, and good scalability can be achieved. Finally, a mixed
2015-01-01
Molecules able to bind the antigen-binding sites of antibodies are of interest in medicine and immunology. Since most antibodies are bivalent, higher affinity recognition can be achieved through avidity effects in which a construct containing two or more copies of the ligand engages both arms of the immunoglobulin simultaneously. This can be achieved routinely by immobilizing antibody ligands at high density on solid surfaces, such as ELISA plates, but there is surprisingly little literature on scaffolds that routinely support bivalent binding of antibody ligands in solution, particularly for the important case of human IgG antibodies. Here we show that the simple strategy of linking two antigens with a polyethylene glycol (PEG) spacer long enough to span the two arms of an antibody results in higher affinity binding in some, but not all, cases. However, we found that the creation of multimeric constructs in which several antibody ligands are displayed on a dextran polymer reliably provides much higher affinity binding than is observed with the monomer in all cases tested. Since these dextran conjugates are simple to construct, they provide a general and convenient strategy to transform modest affinity antibody ligands into high affinity probes. An additional advantage is that the antibody ligands occupy only a small number of the reactive sites on the dextran, so that molecular cargo can be attached easily, creating molecules capable of delivering this cargo to cells displaying antigen-specific receptors. PMID:25073654
Manitz, J. (Juliane); Harbering, J. (Jonas); M.E. Schmidt (Marie); T. Kneib (Thomas); A. Schöbel (Anita)
2017-01-01
textabstractThe correct identification of the source of a propagation process is crucial in many research fields. As a specific application, we consider source estimation of delays in public transportation networks. We propose two approaches: an effective distance median and a backtracking method.
2017 Guralp Affinity Digitizer Evaluation.
Energy Technology Data Exchange (ETDEWEB)
Merchant, Bion J.
2018-03-01
Sandia National Laboratories has tested and evaluated two Guralp Affinity digitizers. The Affinity digitizers are intended to record sensor output for seismic and infrasound monitoring applications. The purpose of this digitizer evaluation is to measure the performance characteristics in such areas as power consumption, input impedance, sensitivity, full scale, self- noise, dynamic range, system noise, response, passband, and timing. The Affinity digitizers are being evaluated for potential use in the International Monitoring System (IMS) of the Comprehensive Nuclear Test-Ban-Treaty Organization (CTBTO).
Landsman, Zinoviy
2008-10-01
We present an explicit closed form solution of the problem of minimizing the root of a quadratic functional subject to a system of affine constraints. The result generalizes Z. Landsman, Minimization of the root of a quadratic functional under an affine equality constraint, J. Comput. Appl. Math. 2007, to appear, see sciencedirect.com/science/journal/03770427>, articles in press, where the optimization problem was solved under only one linear constraint. This is of interest for solving significant problems pertaining to financial economics as well as some classes of feasibility and optimization problems which frequently occur in tomography and other fields. The results are illustrated in the problem of optimal portfolio selection and the particular case when the expected return of finance portfolio is certain is discussed.
Numerical modelling of fire propagation: principles and applications at Electricite de France
International Nuclear Information System (INIS)
Rongere, F.X.; Gibault, J.
1994-05-01
Electricite de France, wishing to limit the accidental unavailability of its nuclear plants and to ensure their safety rigorously takes particular care to reduce the risk of fire. In this context, the Heat Transfer and Aerodynamics Branch of the Research and Development Division has been in charge of the design of numerical tools to simulate the fire propagation in buildings since 1985. Its program is articulated towards three axes which include : the development of the MAGIC software program, the characterization of the combustibles present in power plants, the development of methods for the use of the computer codes in the design of plants. This paper gives on overview of the activity in progress in this research fields. It illustrates also the applications performed and anticipated at Electricite de France of the numerical simulation in fire safety design. We discuss at the end of it the limitations and the development factors of these tool use. One of the later is the association of MAGIC software and the FIVE method. (authors). 15 refs., 10 figs., 2 tabs
Application of radiation induced mutations in the improvement of vegetatively propagated crops
International Nuclear Information System (INIS)
Mohan Jain, S.
2009-01-01
Full text: The NOBEL PEACE PRIZE, 2005, award to the International Atomic Energy Agency (IAEA) is a recognition to the contributions of nuclear technique applications, in a tough face off with plant genetic engineering, in sustainable food production, improvement of nutrition balance, and food security. Nuclear technology is effective in generating genetic variability, selection of useful mutants and multiplication in large numbers. A wide range of mutants of various vegetatively propagated crops have been isolated (www.iaea.org). In vitro plant regeneration is very much genotypic dependent, type of explants; culture medium, plant growth regulators etc. Somatic embryogenesis is an ideal system for the selection and multiplication of mutants and also would save time to dissociate chimeras. The role of molecular tools has become very crucial in understanding the molecular basis of differentiation and genetic variability; gene identification, isolation, and transfer. The new gene discovery with reverse and forward genetics will open the way for developing functional genomic plant breeding. There is no opposition from the consumers to consume food products derived from mutants, unlike strong opposition to the consumption of genetically modified (GM) food. Moreover, bio-safety regulations are not applied to mutants, however, strictly adhere to GM food. Tomorrow's agriculture will be under tremendous pressure for feeding the world's population in the face of climatic changes, salt and drought stresses, and biotic stresses; and mutagenesis would be the answer
Directory of Open Access Journals (Sweden)
MOACYR J.B.M. RÊGO
2014-09-01
Full Text Available The present work aimed to magnetize Parkia pendula seeds gum and use it as a matrix for Concanavalin A covalent immobilization. This composite was applied in affinity purification of glycoconjugates. Parkia pendula seeds were hydrated and the gum provenient from the supernatant was precipitated and washed with ethanol and dried. The gum was magnetized in co-precipitation using solutions of Fe+2 and Fe+3. Matrix activation was accomplished with NaIO4. Magnetized Parkia pendula seeds gum with covalently immobilized Concanavalin A was used as an affinity matrix for the recognition of bovine serum fetuin glycoprotein. Fetuin elution was carried out with a solution of glucose (300mM and evaluated through SDS-PAGE. The efficiency of lectin immobilization and fetuin purification were 63% and 14%, respectively. These results indicate that the composite produced is a promising magnetic polysaccharide matrix for lectins immobilization. Thus, such system can be applied for affinity purification allowing an easy recovery by magnetic field.
International Nuclear Information System (INIS)
Tripathy, Rohit; Bilionis, Ilias; Gonzalez, Marcial
2016-01-01
Uncertainty quantification (UQ) tasks, such as model calibration, uncertainty propagation, and optimization under uncertainty, typically require several thousand evaluations of the underlying computer codes. To cope with the cost of simulations, one replaces the real response surface with a cheap surrogate based, e.g., on polynomial chaos expansions, neural networks, support vector machines, or Gaussian processes (GP). However, the number of simulations required to learn a generic multivariate response grows exponentially as the input dimension increases. This curse of dimensionality can only be addressed, if the response exhibits some special structure that can be discovered and exploited. A wide range of physical responses exhibit a special structure known as an active subspace (AS). An AS is a linear manifold of the stochastic space characterized by maximal response variation. The idea is that one should first identify this low dimensional manifold, project the high-dimensional input onto it, and then link the projection to the output. If the dimensionality of the AS is low enough, then learning the link function is a much easier problem than the original problem of learning a high-dimensional function. The classic approach to discovering the AS requires gradient information, a fact that severely limits its applicability. Furthermore, and partly because of its reliance to gradients, it is not able to handle noisy observations. The latter is an essential trait if one wants to be able to propagate uncertainty through stochastic simulators, e.g., through molecular dynamics codes. In this work, we develop a probabilistic version of AS which is gradient-free and robust to observational noise. Our approach relies on a novel Gaussian process regression with built-in dimensionality reduction. In particular, the AS is represented as an orthogonal projection matrix that serves as yet another covariance function hyper-parameter to be estimated from the data. To train the
Tripathy, Rohit; Bilionis, Ilias; Gonzalez, Marcial
2016-09-01
Uncertainty quantification (UQ) tasks, such as model calibration, uncertainty propagation, and optimization under uncertainty, typically require several thousand evaluations of the underlying computer codes. To cope with the cost of simulations, one replaces the real response surface with a cheap surrogate based, e.g., on polynomial chaos expansions, neural networks, support vector machines, or Gaussian processes (GP). However, the number of simulations required to learn a generic multivariate response grows exponentially as the input dimension increases. This curse of dimensionality can only be addressed, if the response exhibits some special structure that can be discovered and exploited. A wide range of physical responses exhibit a special structure known as an active subspace (AS). An AS is a linear manifold of the stochastic space characterized by maximal response variation. The idea is that one should first identify this low dimensional manifold, project the high-dimensional input onto it, and then link the projection to the output. If the dimensionality of the AS is low enough, then learning the link function is a much easier problem than the original problem of learning a high-dimensional function. The classic approach to discovering the AS requires gradient information, a fact that severely limits its applicability. Furthermore, and partly because of its reliance to gradients, it is not able to handle noisy observations. The latter is an essential trait if one wants to be able to propagate uncertainty through stochastic simulators, e.g., through molecular dynamics codes. In this work, we develop a probabilistic version of AS which is gradient-free and robust to observational noise. Our approach relies on a novel Gaussian process regression with built-in dimensionality reduction. In particular, the AS is represented as an orthogonal projection matrix that serves as yet another covariance function hyper-parameter to be estimated from the data. To train the
Energy Technology Data Exchange (ETDEWEB)
Tripathy, Rohit, E-mail: rtripath@purdue.edu; Bilionis, Ilias, E-mail: ibilion@purdue.edu; Gonzalez, Marcial, E-mail: marcial-gonzalez@purdue.edu
2016-09-15
Uncertainty quantification (UQ) tasks, such as model calibration, uncertainty propagation, and optimization under uncertainty, typically require several thousand evaluations of the underlying computer codes. To cope with the cost of simulations, one replaces the real response surface with a cheap surrogate based, e.g., on polynomial chaos expansions, neural networks, support vector machines, or Gaussian processes (GP). However, the number of simulations required to learn a generic multivariate response grows exponentially as the input dimension increases. This curse of dimensionality can only be addressed, if the response exhibits some special structure that can be discovered and exploited. A wide range of physical responses exhibit a special structure known as an active subspace (AS). An AS is a linear manifold of the stochastic space characterized by maximal response variation. The idea is that one should first identify this low dimensional manifold, project the high-dimensional input onto it, and then link the projection to the output. If the dimensionality of the AS is low enough, then learning the link function is a much easier problem than the original problem of learning a high-dimensional function. The classic approach to discovering the AS requires gradient information, a fact that severely limits its applicability. Furthermore, and partly because of its reliance to gradients, it is not able to handle noisy observations. The latter is an essential trait if one wants to be able to propagate uncertainty through stochastic simulators, e.g., through molecular dynamics codes. In this work, we develop a probabilistic version of AS which is gradient-free and robust to observational noise. Our approach relies on a novel Gaussian process regression with built-in dimensionality reduction. In particular, the AS is represented as an orthogonal projection matrix that serves as yet another covariance function hyper-parameter to be estimated from the data. To train the
Power Series Expansion of Propagator for Path Integral and Its Applications
International Nuclear Information System (INIS)
Ou Yuanjin; Liang Xianting
2007-01-01
In this paper we obtain a propagator of path integral for a harmonic oscillator and a driven harmonic oscillator by using the power series expansion. It is shown that our result for the harmonic oscillator is more exact than the previous one obtained with other approximation methods. By using the same method, we obtain a propagator of path integral for the driven harmonic oscillator, which does not have any exact expansion. The more exact propagators may improve the path integral results for these systems.
Parallel Reservoir Simulations with Sparse Grid Techniques and Applications to Wormhole Propagation
Wu, Yuanqing
2015-01-01
the traditional simulation technique relying on the Darcy framework, we propose a new framework called Darcy-Brinkman-Forchheimer framework to simulate wormhole propagation. Furthermore, to process the large quantity of cells in the simulation grid and shorten
Application of propagation predictions to Earth/space telecommunications system design
1981-01-01
The corresponding between a given propagation phenomenon and system performance is considered. Propagation data are related to system performance parameters, allowing the systems engineer to perform the analyses determining how well requirements are met by a given system design, and enabling the systems engineer to modify that design if necessary. The various ways of specifying performance criteria for different kinds of systems are discussed, and a general procedure for system design is presented and demonstrated.
Kumar, Sweta Binod; Sharnagat, Preeti; Manna, Paramita; Bhattacharya, Amit; Haldar, Soumya
2017-02-01
Isolation of diversified bacteria from seawater is a major challenge in the field of environmental microbiology. In the present study, an attempt has been made to select specific membrane with improved property of attaching diversified bacteria. Initially, different concentrations (15, 18, and 20% W/W) of polysulfone (PSF) were used to check their affinity for the attachment of selected gram-positive (Bacillus subtilis) and gram-negative (Escherichia coli) bacteria. Among these, 20% W/W PSF showed maximum attachment. Therefore, membrane prepared with other materials such as polyvinylidene fluoride (PVDF) and polyether sulfone (PES) were used with the same concentration (20% W/W) to check their improved bacterial attachment property. Comparative study of bacterial attachment on three different membranes revealed that PVDF possessed the highest affinity towards both the groups of bacteria. This property was confirmed by different analytical methods viz. contact angle, atomic force microscopy, zeta potential, and flux study and further validated with seawater samples collected from seven sites of western coast and Lakshadweep island of India, using Biolog EcoPlate™. All the samples showed that bacterial richness and diversity was high in PVDF membrane in comparison to surrounding seawater samples. Interestingly, affinity for more diversified bacteria was reported to be higher in water sample with less turbidity and low bacteria load. This finding can facilitate the development of PVDF (20% W/W) membrane as a simple, cheap, and less labor intensive environmental sampling tool for the isolation of diversified bacteria from seawater sample wih different physiochemical properties. Graphical abstract ᅟ.
International Nuclear Information System (INIS)
Aratyn, H.; Ferreira, L.A.; Gomes, J.F.; Zimerman, A.H.
1992-01-01
We constructed a center less W-infinity type of algebra in terms of a generator of a center less Virasoro algebra and an Abelian spin-1 current. This algebra conventionally emerges in the study of pseudo-differential operators on a circle or alternatively within KP hierarchy with Watanabe's bracket. Construction used here is based on a special deformation of the algebra w ∞ of area preserving diffeomorphisms of a 2-manifold. We show that this deformation technique applies to the two-loop WZNW and conformal affine Toda models, establishing henceforth W ∞ invariance of these models. (author)
Marine Atmospheric Surface Layer and Its Application to Electromagnetic Wave Propagation
Wang, Q.
2015-12-01
An important application of the atmospheric surface layer research is to characterize the near surface vertical gradients in temperature and humidity in order to predict radar and radio communication conditions in the environment. In this presentation, we will give an overview of a new research initiative funded under the Office of Naval Research (ONR) Multi-University Research Initiative (MURI): the Coupled Air-Sea Processes and EM Ducting Research (CASPER). The objective is to fully characterize the marine atmospheric boundary layer (MABL) as an electromagnetic (EM) propagation environment with the emphasis of spatial and temporal heterogeneities and surface wave/swell effects, both of which contravene the underlying assumptions of Monin-Obukhov Similarity Theory (MOST) used in coupled environmental forecast models. Furthermore, coastal variability in the inversion atop the MABL presents a challenge to forecast models and also causes practical issues in EM prediction models. These issues are the target of investigation of CASPER. CASPER measurement component includes two major field campaigns: CASPER-East (2015 Duck, NC) and CASPER-West (2018 southern California). This presentation will show the extensive measurements to be made during the CASPER -East field campaign with the focus on the marine atmospheric surface layer measurements with two research vessels, two research aircraft, surface flux buoy, wave gliders, ocean gliders, tethered balloons, and rawinsondes. Unlike previous research on the marine surface layer with the focus on surface fluxes and surface flux parameterization, CASPER field campaigns also emphasize of the surface layer profiles and the validation of the surface layer flux-profile relationship originally derived over land surfaces. Results from CASPER pilot experiment and preliminary results from CASPER-East field campaign will be discussed.
The utility of affine variables and affine coherent states
International Nuclear Information System (INIS)
Klauder, John R
2012-01-01
Affine coherent states are generated by affine kinematical variables much like canonical coherent states are generated by canonical kinematical variables. Although all classical and quantum formalisms normally entail canonical variables, it is shown that affine variables can serve equally well for many classical and quantum studies. This general purpose analysis provides tools to discuss two major applications: (1) the completely successful quantization of a nonrenormalizable scalar quantum field theory by affine techniques, in complete contrast to canonical techniques which only offer triviality; and (2) a formulation of the kinematical portion of quantum gravity that favors affine kinematical variables over canonical kinematical variables, and which generates a framework in which a favorable analysis of the constrained dynamical issues can take place. All this is possible because of the close connection between the affine and the canonical stories, while the few distinctions can be used to advantage when appropriate. This article is part of a special issue of Journal of Physics A: Mathematical and Theoretical devoted to ‘Coherent states: mathematical and physical aspects’. (review)
International Nuclear Information System (INIS)
Frosio, Thomas; Bonaccorsi, Thomas; Blaise, Patrick
2016-01-01
Highlights: • Hybrid methods are developed for uncertainty propagation. • These methods take into account the flux perturbation in the coupled problem. • We show that OAT and MC methods give coherent results, except for Pearson correlations. • Local sensitivity analysis is performed. - Abstract: A novel method has been developed to calculate sensitivity coefficients in coupled Boltzmann/Bateman problem for nuclear data (ND) uncertainties propagation on the reactivity. Different uncertainty propagation methodologies, such as One-At-a-Time (OAT) and hybrid Monte-Carlo/deterministic methods have been tested and are discussed on an actual example of ND uncertainty problem on a Material Testing Reactor (MTR) benchmark. Those methods, unlike total Monte Carlo (MC) sampling for uncertainty propagation and quantification (UQ), allow obtaining sensitivity coefficients, as well as Bravais–Pearson correlations values between Boltzmann and Bateman, during the depletion calculation for global neutronics parameters such as the effective multiplication coefficient. The methodologies are compared to a pure MC sampling method, usually considered as the “reference” method. It is shown that methodologies can seriously underestimate propagated variances, when Bravais–Pearson correlations on ND are not taken into account in the UQ process.
Wang, Zhuo; Dunkerton, Timothy J.; Montgomery, Michael T.
2012-01-01
A wave-tracking algorithm is developed for northwestward-propagating waves that, on occasion, play a role in tropical cyclogenesis over the western oceans. To obtain the Lagrangian flow structure, the frame of reference is translated obliquely at the same propagation speed with the precursor disturbance. Trajectory analysis suggests that streamlines in the obliquely translated frame of reference can be used to approximate flow trajectories. The algorithm was applied to Super Typhoon Nakri (2008), Tropical Cyclone Erika (2009), and a few other examples. Diagnoses of meteorological analyses and satellite-derived moisture and precipitation fields show that the marsupial framework for tropical cyclogenesis in tropical easterly waves is relevant also for northwestward-propagating disturbances as are commonly observed in the tropical western Atlantic, the Gulf of Mexico, and the western North Pacific. Finally, it is suggested that analysis of the global model data and satellite observations in the marsupial framework can provide useful guidance on early tropical cyclone advisories.
Wang, Yu; Chou, Chia-Chun
2018-05-01
The coupled complex quantum Hamilton-Jacobi equations for electronic nonadiabatic transitions are approximately solved by propagating individual quantum trajectories in real space. Equations of motion are derived through use of the derivative propagation method for the complex actions and their spatial derivatives for wave packets moving on each of the coupled electronic potential surfaces. These equations for two surfaces are converted into the moving frame with the same grid point velocities. Excellent wave functions can be obtained by making use of the superposition principle even when nodes develop in wave packet scattering.
Energy Technology Data Exchange (ETDEWEB)
He, Haibo, E-mail: hbhe2006@shu.edu.cn [Department of Chemistry, Shanghai University, Shanghai 200444 (China); Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), Department of Chemistry, Wuhan University, Wuhan 430072 (China); Zhou, Ziqing; Dong, Chen; Wang, Xin [Department of Chemistry, Shanghai University, Shanghai 200444 (China); Yu, Qiong-wei [Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), Department of Chemistry, Wuhan University, Wuhan 430072 (China); Lei, Yunyi; Luo, Liqiang [Department of Chemistry, Shanghai University, Shanghai 200444 (China); Feng, Yuqi [Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), Department of Chemistry, Wuhan University, Wuhan 430072 (China)
2016-11-09
. - Highlights: • A boronate affinity magnetic sorbent was facilely derived from the Fe{sub 3}O{sub 4}@POSS. • A high density of boronic acid ligand and an excellent affinity ability towards cis-diol compounds were obtained. • A BA-MSPE-HPLC/UV method was established for sensitive recognition of CAs from urine samples. • A universality strategy for deriving applicable biological analysis-oriented extraction materials was well demonstrated.
International Nuclear Information System (INIS)
Dumouchel, P.E.
2008-03-01
This research thesis aims at understanding and analysing some mechanisms involved in the dynamic failure under various loadings which are notably present in industrial environment, and more particularly in some parts of EDF's plants where networks of micro-cracks may steadily grow: heterogeneous zones, defects under coating. The author presents a simplified model based on the de-bonding of a film to understand the mechanisms of a sudden failure under a quasi-static loading. He develops a similar model to explore the influence of a defect on crack propagation under a quasi-static loading, and then under a sudden loading. This model is then generalized to the case of several defects, and more particularly very small defects. Finally, the author gives a numerical interpretation of a sudden propagation under quasi-static loading
International Nuclear Information System (INIS)
Shi, Wei; Dong, Ze Hua; Kong, De Jie; Guo, Xing Peng
2013-01-01
Multi-electrode technique named as wire beam electrode (WBE) was used to study pitting corrosion of rebar under concrete cover. When WBE embedded mortar sample was immersed in NaCl solution, uneven distributions of galvanic current and open circuit potential (OCP) on the WBE were observed due to the initiation of pitting corrosion. The following oxygen depletion in mortar facilitated the negative shift of the OCP and the smoothing of the current and potential distributions. Wetting–drying cycle experiments showed that corrosion products instead of oxygen in wet mortar specimen sustained the propagation of pitting corrosion due to Fe (III) taking part in cathodic depolarization during oxygen-deficient wet period, which was confirmed by micro-Raman spectroscopy. In addition, new pitting corrosion occurred mainly near the corrosion products, leading to preferentially horizontal propagation of rust layer on the WBE. A localized corrosion factor was further presented to quantify the localised corrosion based on galvanic current maps
Energy Technology Data Exchange (ETDEWEB)
Shi, Wei; Dong, Ze Hua, E-mail: zehua.dong@gmail.com; Kong, De Jie; Guo, Xing Peng
2013-06-15
Multi-electrode technique named as wire beam electrode (WBE) was used to study pitting corrosion of rebar under concrete cover. When WBE embedded mortar sample was immersed in NaCl solution, uneven distributions of galvanic current and open circuit potential (OCP) on the WBE were observed due to the initiation of pitting corrosion. The following oxygen depletion in mortar facilitated the negative shift of the OCP and the smoothing of the current and potential distributions. Wetting–drying cycle experiments showed that corrosion products instead of oxygen in wet mortar specimen sustained the propagation of pitting corrosion due to Fe (III) taking part in cathodic depolarization during oxygen-deficient wet period, which was confirmed by micro-Raman spectroscopy. In addition, new pitting corrosion occurred mainly near the corrosion products, leading to preferentially horizontal propagation of rust layer on the WBE. A localized corrosion factor was further presented to quantify the localised corrosion based on galvanic current maps.
Energy Technology Data Exchange (ETDEWEB)
Tomkins, B.
1975-05-01
The value of modelling the fatigue crack propagation process is discussed and current models are examined in the light of increasing knowledge of crack tip deformation. Elevated temperature fatigue is examined in detail as an area in which models could contribute significantly to engineering design. A model is developed which examines the role of time-dependent creep cavitation on the failure process in an interactive creep-fatigue situation. (auth)
A Novel Vertex Affinity for Community Detection
Energy Technology Data Exchange (ETDEWEB)
Yoo, Andy [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Sanders, Geoffrey [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Henson, Van [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Vassilevski, Panayot [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
2015-10-05
We propose a novel vertex affinity measure in this paper. The new vertex affinity quantifies the proximity between two vertices in terms of their clustering strength and is ideal for such graph analytics applications as community detection. We also developed a framework that combines simple graph searches and resistance circuit formulas to compute the vertex affinity efficiently. We study the properties of the new affinity measure empirically in comparison to those of other popular vertex proximity metrics. Our results show that the existing metrics are ill-suited for community detection due to their lack of fundamental properties that are essential for correctly capturing inter- and intra-cluster vertex proximity.
Horejsí, V; Tichá, M; Kocourek, J
1977-09-29
Affinity electrophoresis was used to study the sugar binding heterogeneity of lectins or their derivatives. Commercial and demetallized preparations of concanavalin A could be resolved by affinity electrophoresis into three components with different affinity to immobilized sugar. Similarly the Vicia cracca lectin obtained by affinity chromatography behaved on affinity gels as a mixture of active and inactive molecular species. Affinity electrophoresis has shown that the nonhemagglutinating acetylated lentil lectin and photo-oxidized or sulfenylated pea lectin retain their sugar binding properties; dissociation constants of saccharide complexes of these derivatives are similar to those of native lectins. The presence of specific immobilized sugar in the affinity gel improved the resolution of isolectins from Dolichos biflorus and Ricinus communis seeds.
International Nuclear Information System (INIS)
Fukuda, E.K.
1983-01-01
Molecular electron affinities have historically been difficult quantities to measure accurately. These difficulties arise from differences in structure between the ion and neutral as well as the existence of excited negative ion states. To circumvent these problems, relative electron affinities were determined in this dissertation by studying equilibrium electron transfer reactions using a pulsed ion cyclotron resonance (ICR) spectrometer. Direct measurement of ion and neutral concentrations for reactions of the general type, A - + B = B - + A, allow calculation of the equilibrium constant and, therefore, the free energy change. The free energy difference is related to the difference in electron affinities between A and B. A relative electron affinity scale covering a range of about 45 kcal/mol was constructed with various substituted p-benzoquinones, nitrobenzenes, anhydrides, and benzophenones. To assign absolute electron affinities, various species with accurately known electron affinities are tied to the scale via ion-cyclotron double resonance bracketing techniques. After the relative scale is anchored to these species with well-known electron affinities, the scale is then used as a check on other electron affinity values as well as generating new electron affinity values. Many discrepancies were found between the electron affinities measured using the ICR technique and previous literature determinations
Single-step affinity purification for fungal proteomics.
Liu, Hui-Lin; Osmani, Aysha H; Ukil, Leena; Son, Sunghun; Markossian, Sarine; Shen, Kuo-Fang; Govindaraghavan, Meera; Varadaraj, Archana; Hashmi, Shahr B; De Souza, Colin P; Osmani, Stephen A
2010-05-01
A single-step protein affinity purification protocol using Aspergillus nidulans is described. Detailed protocols for cell breakage, affinity purification, and depending on the application, methods for protein release from affinity beads are provided. Examples defining the utility of the approaches, which should be widely applicable, are included.
Single-Step Affinity Purification for Fungal Proteomics ▿ †
Liu, Hui-Lin; Osmani, Aysha H.; Ukil, Leena; Son, Sunghun; Markossian, Sarine; Shen, Kuo-Fang; Govindaraghavan, Meera; Varadaraj, Archana; Hashmi, Shahr B.; De Souza, Colin P.; Osmani, Stephen A.
2010-01-01
A single-step protein affinity purification protocol using Aspergillus nidulans is described. Detailed protocols for cell breakage, affinity purification, and depending on the application, methods for protein release from affinity beads are provided. Examples defining the utility of the approaches, which should be widely applicable, are included.
Directory of Open Access Journals (Sweden)
Fei Liu
2017-12-01
Full Text Available The propagation of wormhole is vital important for matrix acidizing and acid fracturing in carbonate reservoirs. While the formation of acid dissolved wormhole is derived from heterogeneous physical and chemical transportations and reactions. Alveolate dissolved pores, krast caves, and natural fissures are the major reservoir spaces for the Sinian dolomite formation in the Anyue gas field of the Sichuan Basin. There were four categories of formation, which are matrix dominated, inter-breccia dissolved pore dominated, dissolved pore and cave dominated, and fissure and cave dominated, based on the development intensity and connectedness of caves and fissures. The caves and fissures make the wormhole formation and propagation particularly complicated. Firstly, the 3-D topological structure of dissolved pores, vugs, fissures and throats inside cores is quantitatively scanned by CT imaging technology for its feature of vivid and damage-free. Secondly, 3-D patterns of wormhole are obtained with CT scanning after core flooding by acid. Additionally, the pore-throat network model is reconstructed with digital cores technology. Then, the size and ratio of pore and throat before and after core flooding by acid is analyzed and the absolute permeability of pore scale flow is numerically simulated to understand the fundamental influence of pores and vugs distribution and connectedness on wormhole propagation. Lastly, the wormhole pattern gained by CT scanning and simulating with two-scale model is compared. Meanwhile, the corrected two-scale model is utilized to simulate the wormhole propagation for matrix acidizing and acid fracturing of Sinian fractured-vuggy dolomite in Anyue gas field, Sichuan Basin. The optimized injection rate and volume were in agreement with the characteristic matrix acidizing operating curve, which indicates that the two-scale model was suitable for matrix acidizing optimization design of such formations. In addition, the simulated
International Nuclear Information System (INIS)
Hermansson, B.R.
1989-01-01
The main part of this thesis consists of 15 published papers, in which the numerical Beam Propagating Method (BPM) is investigated, verified and used in a number of applications. In the introduction a derivation of the nonlinear Schroedinger equation is presented to connect the beginning of the soliton papers with Maxwell's equations including a nonlinear polarization. This thesis focuses on the wide use of the BPM for numerical simulations of propagating light and particle beams through different types of structures such as waveguides, fibers, tapers, Y-junctions, laser arrays and crystalline solids. We verify the BPM in the above listed problems against other numerical methods for example the Finite-element Method, perturbation methods and Runge-Kutta integration. Further, the BPM is shown to be a simple and effective way to numerically set up the Green's function in matrix form for periodic structures. The Green's function matrix can then be diagonalized with matrix methods yielding the eigensolutions of the structure. The BPM inherent transverse periodicity can be untied, if desired, by for example including an absorptive refractive index at the computational window edges. The interaction of two first-order soliton pulses is strongly dependent on the phase relationship between the individual solitons. When optical phase shift keying is used in coherent one-carrier wavelength communication, the fiber attenuation will suppress or delay the nonlinear instability. (orig.)
International Nuclear Information System (INIS)
Nieves, Jose F.
2010-01-01
We apply the thermal field theory methods to study the propagation of photons in a plasma layer, that is a plasma in which the electrons are confined to a two-dimensional plane sheet. We calculate the photon self-energy and determine the appropriate expression for the photon propagator in such a medium, from which the properties of the propagating modes are obtained. The formulas for the photon dispersion relations and polarization vectors are derived explicitly in some detail for some simple cases of the thermal distributions of the charged particle gas, and appropriate formulas that are applicable in more general situations are also given.
Numerical simulations of wave propagation in long bars with application to Kolsky bar testing
Energy Technology Data Exchange (ETDEWEB)
Corona, Edmundo [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
2014-11-01
Material testing using the Kolsky bar, or split Hopkinson bar, technique has proven instrumental to conduct measurements of material behavior at strain rates in the order of 10^{3} s^{-1}. Test design and data reduction, however, remain empirical endeavors based on the experimentalist's experience. Issues such as wave propagation across discontinuities, the effect of the deformation of the bar surfaces in contact with the specimen, the effect of geometric features in tensile specimens (dog-bone shape), wave dispersion in the bars and other particulars are generally treated using simplified models. The work presented here was conducted in Q3 and Q4 of FY14. The objective was to demonstrate the feasibility of numerical simulations of Kolsky bar tests, which was done successfully.
International Nuclear Information System (INIS)
Sabouri, Pouya
2013-01-01
This thesis presents a comprehensive study of sensitivity/uncertainty analysis for reactor performance parameters (e.g. the k-effective) to the base nuclear data from which they are computed. The analysis starts at the fundamental step, the Evaluated Nuclear Data File and the uncertainties inherently associated with the data they contain, available in the form of variance/covariance matrices. We show that when a methodical and consistent computation of sensitivity is performed, conventional deterministic formalisms can be sufficient to propagate nuclear data uncertainties with the level of accuracy obtained by the most advanced tools, such as state-of-the-art Monte Carlo codes. By applying our developed methodology to three exercises proposed by the OECD (Uncertainty Analysis for Criticality Safety Assessment Benchmarks), we provide insights of the underlying physical phenomena associated with the used formalisms. (author)
DEFF Research Database (Denmark)
Hong, Jinglan; Shaked, Shanna; Rosenbaum, Ralph K.
2010-01-01
to develop and apply to both inventory and impact assessment an explicit and transparent analytical approach to uncertainty. This approach applies Taylor series expansions to the uncertainty propagation of lognormally distributed parameters. Materials and methods We first apply the Taylor series expansion...... determine a range and a best estimate of a) the squared geometric standard deviation on the ratio of the two scenario scores, "A/B", and b) the degree of confidence in the prediction that the impact of scenario A is lower than B (i.e., the probability that A/B75%). For the aluminum panel, the electricity...... and aluminum primary production, as well as the light oil consumption, are the dominant contributors to the uncertainty. The developed approach for scenario comparisons, differentiating between common and independent parameters, leads to results similar to those of a Monte Carlo analysis; for all tested cases...
Long Range Sound Propagation over Sea: Application to Wind Turbine Noise
Energy Technology Data Exchange (ETDEWEB)
Boue, Matieu
2007-12-13
The classical theory of spherical wave propagation is not valid at large distances from a sound source due to the influence of wind and temperature gradients that refract, i.e., bend the sound waves. This will in the downwind direction lead to a cylindrical type of wave spreading for large distances (> 1 km). Cylindrical spreading will give a smaller damping with distance as compared to spherical spreading (3 dB/distance doubling instead of 6 dB). But over areas with soft ground, i.e., grass land, the effect of ground reflections will increase the damping so that, if the effect of atmospheric damping is removed, a behavior close to a free field spherical spreading often is observed. This is the standard assumption used in most national recommendations for predicting outdoor sound propagation, e.g., noise from wind turbines. Over areas with hard surfaces, e.g., desserts or the sea, the effect of ground damping is small and therefore cylindrical propagation could be expected in the downwind direction. This observation backed by a limited number of measurements is the background for the Swedish recommendation, which suggests that cylindrical wave spreading should be assumed for distances larger than 200 m for sea based wind turbines. The purpose of this work was to develop measurement procedures for long range sound transmission and to apply this to investigate the occurrence of cylindrical wave spreading in the Baltic Sea. This work has been successfully finished and is described in this report. Another ambition was to develop models for long range sound transmission based on the parabolic equation. Here the work is not finished but must be continued in another project. Long term measurements were performed in the Kalmar strait, Sweden, located between the mainland and Oeland, during 2005 and 2006. Two different directive sound sources placed on a lighthouse in the middle of the strait produced low frequency tones at 80, 200 and 400 Hz. At the reception point on
DEFF Research Database (Denmark)
Buchardt, Kristian
2016-01-01
Affine processes possess the property that expectations of exponential affine transformations are given by a set of Riccati differential equations, which is the main feature of this popular class of processes. In this paper we generalise these results for expectations of more general transformati...
PRINCIPLES OF AFFINITY-BASED BIOSENSORS
Despite the amount of resources that have been invested by national and international academic, government, and commercial sectors to develop affinity-based biosensor products, little obvious success has been realized through commercialization of these devices for specific applic...
International Nuclear Information System (INIS)
Verma, Surendra P.; Andaverde, Jorge; Santoyo, E.
2006-01-01
We used the error propagation theory to calculate uncertainties in static formation temperature estimates in geothermal and petroleum wells from three widely used methods (line-source or Horner method; spherical and radial heat flow method; and cylindrical heat source method). Although these methods commonly use an ordinary least-squares linear regression model considered in this study, we also evaluated two variants of a weighted least-squares linear regression model for the actual relationship between the bottom-hole temperature and the corresponding time functions. Equations based on the error propagation theory were derived for estimating uncertainties in the time function of each analytical method. These uncertainties in conjunction with those on bottom-hole temperatures were used to estimate individual weighting factors required for applying the two variants of the weighted least-squares regression model. Standard deviations and 95% confidence limits of intercept were calculated for both types of linear regressions. Applications showed that static formation temperatures computed with the spherical and radial heat flow method were generally greater (at the 95% confidence level) than those from the other two methods under study. When typical measurement errors of 0.25 h in time and 5 deg. C in bottom-hole temperature were assumed for the weighted least-squares model, the uncertainties in the estimated static formation temperatures were greater than those for the ordinary least-squares model. However, if these errors were smaller (about 1% in time and 0.5% in temperature measurements), the weighted least-squares linear regression model would generally provide smaller uncertainties for the estimated temperatures than the ordinary least-squares linear regression model. Therefore, the weighted model would be statistically correct and more appropriate for such applications. We also suggest that at least 30 precise and accurate BHT and time measurements along with
Light propagation and emission in scattering media. Application to imaging of complex media
International Nuclear Information System (INIS)
Pierrat, Romain
2007-01-01
In this manuscript, we raise different aspects of the propagation and emission of electromagnetic waves in a scattering medium. In the first part, we show that the Radiative Transfer Equation (rte) is a very good tool to study light propagation in a complex medium. Thanks to this formalism, we study the evolution of the spatial coherence of the beam inside the medium, which is seen as a signature of the different transport regimes of photons (single scattering, multiple scattering, diffusive regime). Next, we derive rigorously the diffusion approximation by using a modal approach of the rte. In particular, we obtain that the diffusion coefficient is independent of the level of absorption in the dynamic regime while it depends on absorption in the case of the steady-state regime. Finally, we study the temporal fluctuations of the scattered intensity and show that the use of the rte allows to go beyond the diffusive regime described by the diffusing-waves spectroscopy theory (dws). Comparisons between numerical computations and experiments are realized in reflexion to underline the fundamental role of the anisotropy of the scattering, which is not described by the standard theory. The second part is dedicated to the study of light emission in complex media. First, we study the amplification of scattered light in a gain system called random laser and show that it exists a laser threshold in the incoherent feedback regime. This threshold is quantified by using a modal approach of the rte. Thanks to this formalism, we highlight the limitations of the diffusion approximation in such a system. Next, we study the modification of the fluorescent decay rate of a single molecule embedded in a complex medium. We derive a model allowing the replacement of the scattering medium by an homogeneous equivalent medium taking into account the multiple scattering and the interactions between scatterers. This model is validated by comparison with the value of the decay rate of the
International Nuclear Information System (INIS)
Kovalova, Zuzana; Leroy, Magali; Jacobs, Carolyn; Kirkpatrick, Michael J; Odic, Emmanuel; Machala, Zdenko; Lopes, Filipa; Laux, Christophe O; DuBow, Michael S
2015-01-01
Pulsed corona discharges propagated in argon (or in argon with added water vapor) at atmospheric pressure on the interior surface of a 49 cm long quartz tube were investigated for the application of surface bio-decontamination. H 2 O molecule dissociation in the argon plasma generated reactive species (i.e. OH in ground and excited states) and UV emission, which both directly affected bacterial cells. In order to facilitate the evaluation of the contribution of UV radiation, a DNA damage repair defective bacterial strain, Escherichia coli DH-1, was used. Discharge characteristics, including propagation velocity and plasma temperature, were measured. Up to ∼5.5 and ∼5 log 10 reductions were observed for E. coli DH-1 bacteria (from 10 6 initial load) exposed 2 cm and 44 cm away from the charged electrode, respectively, for a 20 min plasma treatment. The factors contributing to the observed bactericidal effect include desiccation, reactive oxygen species (OH) plus H 2 O 2 accumulation in the liquid phase, and UV-B (and possibly VUV) emission in dry argon. The steady state temperature measured on the quartz tube wall did not exceeded 29 °C; the contribution of heating, along with that of H 2 O 2 accumulation, was estimated to be low. The effect of UV-B emission alone or in combination with the other stress factors of the plasma process was examined for different operating conditions. (paper)
Application of distributed point source method (DPSM) to wave propagation in anisotropic media
Fooladi, Samaneh; Kundu, Tribikram
2017-04-01
Distributed Point Source Method (DPSM) was developed by Placko and Kundu1, as a technique for modeling electromagnetic and elastic wave propagation problems. DPSM has been used for modeling ultrasonic, electrostatic and electromagnetic fields scattered by defects and anomalies in a structure. The modeling of such scattered field helps to extract valuable information about the location and type of defects. Therefore, DPSM can be used as an effective tool for Non-Destructive Testing (NDT). Anisotropy adds to the complexity of the problem, both mathematically and computationally. Computation of the Green's function which is used as the fundamental solution in DPSM is considerably more challenging for anisotropic media, and it cannot be reduced to a closed-form solution as is done for isotropic materials. The purpose of this study is to investigate and implement DPSM for an anisotropic medium. While the mathematical formulation and the numerical algorithm will be considered for general anisotropic media, more emphasis will be placed on transversely isotropic materials in the numerical example presented in this paper. The unidirectional fiber-reinforced composites which are widely used in today's industry are good examples of transversely isotropic materials. Development of an effective and accurate NDT method based on these modeling results can be of paramount importance for in-service monitoring of damage in composite structures.
Modeling elastic wave propagation in kidney stones with application to shock wave lithotripsy.
Cleveland, Robin O; Sapozhnikov, Oleg A
2005-10-01
A time-domain finite-difference solution to the equations of linear elasticity was used to model the propagation of lithotripsy waves in kidney stones. The model was used to determine the loading on the stone (principal stresses and strains and maximum shear stresses and strains) due to the impact of lithotripsy shock waves. The simulations show that the peak loading induced in kidney stones is generated by constructive interference from shear waves launched from the outer edge of the stone with other waves in the stone. Notably the shear wave induced loads were significantly larger than the loads generated by the classic Hopkinson or spall effect. For simulations where the diameter of the focal spot of the lithotripter was smaller than that of the stone the loading decreased by more than 50%. The constructive interference was also sensitive to shock rise time and it was found that the peak tensile stress reduced by 30% as rise time increased from 25 to 150 ns. These results demonstrate that shear waves likely play a critical role in stone comminution and that lithotripters with large focal widths and short rise times should be effective at generating high stresses inside kidney stones.
International Nuclear Information System (INIS)
Ilyin, E.; Pashkeev, I.; Senin, A.; Gerasimova, N.
2001-01-01
The possibility of self-propagating high-temperature synthesis (SPHTS) application for an immobilization of solid high level wastes (HLW) in cermet materials is considered. The schemes of multilayer cermet blocks formation are offered. Such blocks consist of a ceramet core with immobilized HLW and a protective cover - ceramet without HLW. The influence of the base components form (pure Ti and Si, ferrotitanium and ferrosilicon), metallic components (Ni, Cu, Cr, Fe, ferrochromium) and nonmetallic components (SiO 2 , Al 2 O 3 , TiO 2 ) on burning rate and cover ceramet structure is investigated in compositions on a basis of Ti+B, Ti+Si, Ti+C systems. Model samples of multilayer cermet blocks are manufactured using of HLW simulators. (authors)
International Nuclear Information System (INIS)
Tan, Haihui; Xu, Guanghua; Tao, Tangfei; Zhang, Sicong; Luo, Ailing
2016-01-01
Highlights: • Optimal defrosting mode for finned-tube evaporator is S0 mode. • Stress excited by ultrasonic vibration is larger than ice adhesion stress 0.4 MPa. • Frequency matching can enhance the defrosting efficiency effectively. • Ultrasonic vibration can effectively suppressing the frost deposition. • Thermal comfort and heat transfer efficiency enhanced with ultrasonic vibration. - Abstract: Frosting deposited on the outdoor coil of air-source heat pump (ASHP) units deteriorates the operational performance and energy efficiency. Therefore, periodic defrosting is necessary. First, the dispersion curves for the propagation mechanism of an ultrasonic guided wave in the evaporator are determined through numerical calculation. In addition, the shear stress and vibration characteristics under ultrasonic excitation are analysed using finite element method (FEM). Finally, the vibration amplitude and defrosting performance of ultrasonic vibration is analysed. The numerical calculation results indicate that three guided wave modes exist in the evaporator, including both A0 and S0 modes of the Lamb wave and SH0 mode of the SH wave, with the optimal defrosting mode being S0 of the Lamb wave. The FEM results show that the vibrational shapes of S0 mode and longitudinal mode clearly exists in the fin and tube, the torsional and flexural modes also exist in the tube, and the FEM results are consistent with the numerical calculation results. The impedance analysis and laser vibrometer results indicate that the resonance frequency shifting, electro-acoustic converting efficiency and vibration energy decrease is due to increasing external load. The ultrasonic defrosting experimental results indicate that ultrasonic vibration can suppress frost deposit on the fin surface.
ALBERTO CARLOS DE QUEIROZ PINTO; VICTOR GALÁN SAÚCO; SISIR KUMAR MITRA; FRANCISCO RICARDO FERREIRA
2018-01-01
ABSTRACT This Chapter has the objectives to search, through the review of the available literature, important informations on the evolution of mango propagation regarding theoretical and practical aspects from cellular base of sexual propagation, nursery structures and organizations, substrate compositions and uses, importance of rootstock and scion selections, also it will be described the preparation and transport of the grafts (stem and bud) as well as the main asexual propagation methods...
Rezaei, Shahla; Shahverdi, Ahmad Reza; Faramarzi, Mohammad Ali
2017-04-01
The aim of the present work was to study the ability of a halophilic bacterial laccase to efficient delignification in extreme conditions. Here, a highly stable extracellular laccase showing ligninolytic activity from halophilic Aquisalibacillus elongatus is described. The laccase production was strongly influenced by NaCl and CuSO 4 and under optimal conditions reached 4.8UmL -1 . The monomeric enzyme of 75kDa was purified by a synthetic affinity column with 68.2% yield and 99.8-fold purification. The enzyme showed some valuable features viz. stability against a wide range of organic solvents, salts, metals, inhibitors, and surfactants and specificity to a wide spectrum of substrates diverse in structure and redox potential. It retained more than 50% of the original activity at 25-75°C and pH 5.0-10.0. Furthermore, the enzyme was found to be effective in the delignification of sugar beet pulp in an ionic liquid that makes it useful for industrial applications. Copyright © 2017 Elsevier Ltd. All rights reserved.
Lectin affinity electrophoresis.
Kobayashi, Yuka
2014-01-01
An interaction or a binding event typically changes the electrophoretic properties of a molecule. Affinity electrophoresis methods detect changes in the electrophoretic pattern of molecules (mainly macromolecules) that occur as a result of biospecific interactions or complex formation. Lectin affinity electrophoresis is a very effective method for the detection and analysis of trace amounts of glycobiological substances. It is particularly useful for isolating and separating the glycoisomers of target molecules. Here, we describe a sensitive technique for the detection of glycoproteins separated by agarose gel-lectin affinity electrophoresis that uses antibody-affinity blotting. The technique is tested using α-fetoprotein with lectin (Lens culinaris agglutinin and Phaseolus vulgaris agglutinin)-agarose gels.
A Generalized Affine Isoperimetric Inequality
Chen, Wenxiong; Howard, Ralph; Lutwak, Erwin; Yang, Deane; Zhang, Gaoyong
2004-01-01
A purely analytic proof is given for an inequality that has as a direct consequence the two most important affine isoperimetric inequalities of plane convex geometry: The Blaschke-Santalo inequality and the affine isoperimetric inequality of affine differential geometry.
Electron affinities: theoretical
International Nuclear Information System (INIS)
Kaufman, J.J.
1976-01-01
A brief description is given of the conceptual background and formalism of the various ab-initio and semi-ab-initio quantum computational techniques for calculating atomic and molecular electron affinities: Hartree--Fock--Roothaan SCF, configuration interaction (CI), multiconfiguration SCF (MC-SCF), Bethe--Goldstone, superposition of configurations (SOC), ab-initio effective core model potentials, Xα-MS, plus other less common methods. Illustrative and comparative examples of electron affinities calculated by these various methods are presented
Tsunami Generation and Propagation by 3D deformable Landslides and Application to Scenarios
McFall, Brian C.; Fritz, Hermann M.
2014-05-01
Tsunamis generated by landslides and volcano flank collapse account for some of the most catastrophic natural disasters recorded and can be particularly devastative in the near field region due to locally high wave amplitudes and runup. The events of 1958 Lituya Bay, 1963 Vajont reservoir, 1980 Spirit Lake, 2002 Stromboli and 2010 Haiti demonstrate the danger of tsunamis generated by landslides or volcano flank collapses. Unfortunately critical field data from these events is lacking. Source and runup scenarios based on real world events are physically modeled using generalized Froude similarity in the three dimensional NEES tsunami wave basin at Oregon State University. A novel pneumatic landslide tsunami generator (LTG) was deployed to simulate landslides with varying geometry and kinematics. The bathymetric and topographic scenarios tested with the LTG are the basin-wide propagation and runup, fjord, curved headland fjord and a conical island setting representing a landslide off an island or a volcano flank collapse. The LTG consists of a sliding box filled with 1,350 kg of landslide material which is accelerated by means of four pneumatic pistons down a 2H:1V slope. The landslide is launched from the sliding box and continues to accelerate by gravitational forces up to velocities of 5 m/s. The landslide Froude number at impact with the water is in the range 1
DEFF Research Database (Denmark)
Sin, Gürkan; Gernaey, Krist; Eliasson Lantz, Anna
2009-01-01
The uncertainty and sensitivity analysis are evaluated for their usefulness as part of the model-building within Process Analytical Technology applications. A mechanistic model describing a batch cultivation of Streptomyces coelicolor for antibiotic production was used as case study. The input...... compared to the large uncertainty observed in the antibiotic and off-gas CO2 predictions. The output uncertainty was observed to be lower during the exponential growth phase, while higher in the stationary and death phases - meaning the model describes some periods better than others. To understand which...... promising for helping to build reliable mechanistic models and to interpret the model outputs properly. These tools make part of good modeling practice, which can contribute to successful PAT applications for increased process understanding, operation and control purposes. © 2009 American Institute...
Lollino, Piernicola; Giordan, Daniele; Allasia, Paolo; Pastor, Manuel
2016-04-01
An intense reactivation of a large earthflow (about 6 million m3 of soil debris) took place in Montaguto (Southern Apennines, Italy) between 2005 and 2006 as a consequence of the retrogression of a sliding process in the source area at the top of the slope. The earthflow run-out was approximately 2-2.5 km long, with the landslide mass thickness approximately ranging between 5 m and 30 m. Relevant damages were produced at the toe of the slope, since important infrastructures hereby located were covered by large volumes of landslide detritum. In the transition area, that is just downslope the source area, the landslide soil mass was channelized and transformed into a viscous soil flowing down through a natural depression channel, with an average displacement rate estimated to range between 3 and 7 m/day. In this work an application of the Smoothed Particle Hydrodynamics method has been carried out in order to simulate both the main features of the earthflow propagation, that is the direction and the thickness of the flowing mass, as well as to investigate some factors of the soil mechanical behavior that might have controlled the earthflow mobility. In particular, two different assumptions concerning the soil rheology, i.e. Bingham visco-plasticity and frictional-consolidating soil, the first complying more with the assumption of a flow-like behavior and the latter with a soil-like behavior of the landslide mass, have been made for comparison purposes. Based on the experiences gained from previous authors concerning the in-situ features of similar earthflow soil masses, these landslides are thought to behave more as a viscous fluid during the very first stages of propagation due to phase transition processes and, later on, to recover a soil-like behavior, therefore characterized by sliding mechanism, due to soil consolidation processes. Field evidences of consolidation processes have indeed been observed in situ in recent years based on pore water pressure monitoring
Variational formulation of the method of lines and its application to the wave propagation problems
CSIR Research Space (South Africa)
Shatalov, M
2011-07-01
Full Text Available accuracy is ( )3 ,O h u t x???? ??? ? (for (1) the error has order ( )2 ,O h u t x??? ??? ? ). For the second order derivative: 18th International Congress on Sound and Vibration, Rio de Janeiro, Brazil, 10-14 July 2011 3... ? ??? ?? ??? ? and first derivative calculation with accuracy ( ) 2 2 2 ,u t xO h x ? ?? ?? ??? ? , gives us the same result as application of the finite difference scheme of accuracy ( ) 4 4 4 ,u t xO h x ? ?? ?? ??? ? to calculation of the second...
Directory of Open Access Journals (Sweden)
Yaw ChiaHwan
2014-01-01
Full Text Available Research on the application of ultraductile engineered cementitious composite (ECC as overlay in the repair of deteriorated concrete structures is performed in this paper. Also, interfacial crack kinking and trapping mechanism experimentally observed in ECC/concrete overlay repair system are described by comparison of toughness and energy release rate. The mechanism involves cycles of extension, kinking, and arrest of interfacial crack into the overlay. Experimental testing of overlay repair system reveals significant improvements in load carrying capacity and ductility over conventional concrete overlay. The commonly observed overlay system failure mode of delamination or spalling is eliminated when ECC is applied. These failure modes are suppressed when ECC is used as an ideal and durable candidate overlay repair material.
Directory of Open Access Journals (Sweden)
ALBERTO CARLOS DE QUEIROZ PINTO
2018-03-01
Full Text Available ABSTRACT This Chapter has the objectives to search, through the review of the available literature, important informations on the evolution of mango propagation regarding theoretical and practical aspects from cellular base of sexual propagation, nursery structures and organizations, substrate compositions and uses, importance of rootstock and scion selections, also it will be described the preparation and transport of the grafts (stem and bud as well as the main asexual propagation methods their uses and practices. Finally, pattern and quality of graft mangos and their commercialization aspects will be discussed in this Chapter.
Cherepanov, Genady P
2015-03-28
By way of introduction, the general invariant integral (GI) based on the energy conservation law is presented, with mention of cosmic, gravitational, mass, elastic, thermal and electromagnetic energy of matter application to demonstrate the approach, including Coulomb's Law generalized for moving electric charges, Newton's Law generalized for coupled gravitational/cosmic field, the new Archimedes' Law accounting for gravitational and surface energy, and others. Then using this approach the temperature track behind a moving crack is found, and the coupling of elastic and thermal energies is set up in fracturing. For porous materials saturated with a fluid or gas, the notion of binary continuum is used to introduce the corresponding GIs. As applied to the horizontal drilling and fracturing of boreholes, the field of pressure and flow rate as well as the fluid output from both a horizontal borehole and a fracture are derived in the fluid extraction regime. The theory of fracking in shale gas reservoirs is suggested for three basic regimes of the drill mud permeation, with calculating the shape and volume of the local region of the multiply fractured rock in terms of the pressures of rock, drill mud and shale gas. © 2015 The Author(s) Published by the Royal Society. All rights reserved.
International Nuclear Information System (INIS)
Crawford, H.J.; Engelage, J.; Jones, F.C.
1989-08-01
A database of single particle inclusive fragment production cross section measurements has been established and is accessible over common computer networks. These measurements have been obtained from both published literature and direct communication with experimenters and include cross sections for nuclear beams on H, He, and heavier targets, and for H and He beams on nuclear targets, for energies >30 MeV/nucleon. These cross sections are directly applicable to calculations involving cosmic ray nuclear interactions with matter. The data base includes projectile, target, and fragment specifications, beam energy, cross section with uncertainty, literature reference, and comment code. It is continuously updated to assure accuracy and completeness. Also available are widely used semi-empirical formulations for calculating production cross sections and excitation functions. In this paper we discuss the database in detail and describe how it can be accessed. We compare the measurements with semi-empirical calculations and point out areas where improved calculations and further cross section measurements are required. 5 refs., 2 figs
Acar, T.; Lauter, K.; Naehrig, M.; Shumow, D.; Abdalla, M.; Lange, T.
2013-01-01
We report on relative performance numbers for affine and projective pairings on a dual-core Cortex A9 ARM processor. Using a fast inversion in the base field and doing inversion in extension fields by using the norm map to reduce to inversions in smaller fields, we find a very low ratio of
Pichardo, Samuel; Moreno-Hernández, Carlos; Drainville, Robert Andrew; Sin, Vivian; Curiel, Laura; Hynynen, Kullervo
2017-09-01
A better understanding of ultrasound transmission through the human skull is fundamental to develop optimal imaging and therapeutic applications. In this study, we present global attenuation values and functions that correlate apparent density calculated from computed tomography scans to shear speed of sound. For this purpose, we used a model for sound propagation based on the viscoelastic wave equation (VWE) assuming isotropic conditions. The model was validated using a series of measurements with plates of different plastic materials and angles of incidence of 0°, 15° and 50°. The optimal functions for transcranial ultrasound propagation were established using the VWE, scan measurements of transcranial propagation with an angle of incidence of 40° and a genetic optimization algorithm. Ten (10) locations over three (3) skulls were used for ultrasound frequencies of 270 kHz and 836 kHz. Results with plastic materials demonstrated that the viscoelastic modeling predicted both longitudinal and shear propagation with an average (±s.d.) error of 9(±7)% of the wavelength in the predicted delay and an error of 6.7(±5)% in the estimation of transmitted power. Using the new optimal functions of speed of sound and global attenuation for the human skull, the proposed model predicted the transcranial ultrasound transmission for a frequency of 270 kHz with an expected error in the predicted delay of 5(±2.7)% of the wavelength. The sound propagation model predicted accurately the sound propagation regardless of either shear or longitudinal sound transmission dominated. For 836 kHz, the model predicted accurately in average with an error in the predicted delay of 17(±16)% of the wavelength. Results indicated the importance of the specificity of the information at a voxel level to better understand ultrasound transmission through the skull. These results and new model will be very valuable tools for the future development of transcranial applications of
International Nuclear Information System (INIS)
Cadavid, A.C.
1989-01-01
The author constructs a non-Abelian field theory by gauging a Kac-Moody algebra, obtaining an infinite tower of interacting vector fields and associated ghosts, that obey slightly modified Feynman rules. She discusses the spontaneous symmetry breaking of such theory via the Higgs mechanism. If the Higgs particle lies in the Cartan subalgebra of the Kac-Moody algebra, the previously massless vectors acquire a mass spectrum that is linear in the Kac-Moody index and has additional fine structure depending on the associated Lie algebra. She proceeds to show that there is no obstacle in implementing the affine extension of supersymmetric Yang-Mills theories. The result is valid in four, six and ten space-time dimensions. Then the affine extension of supergravity is investigated. She discusses only the loop algebra since the affine extension of the super-Poincare algebra appears inconsistent. The construction of the affine supergravity theory is carried out by the group manifold method and leads to an action describing infinite towers of spin 2 and spin 3/2 fields that interact subject to the symmetries of the loop algebra. The equations of motion satisfy the usual consistency check. Finally, she postulates a theory in which both the vector and scalar fields lie in the loop algebra of SO(3). This theory has an expanded soliton sector, and corresponding to the original 't Hooft-Polyakov solitonic solutions she now finds an infinite family of exact, special solutions of the new equations. She also proposes a perturbation method for obtaining an arbitrary solution of those equations for each level of the affine index
An ellipsoidal calculus based on propagation and fusion.
Ros, L; Sabater, A; Thomas, F
2002-01-01
Presents an ellipsoidal calculus based solely on two basic operations: propagation and fusion. Propagation refers to the problem of obtaining an ellipsoid that must satisfy an affine relation with another ellipsoid, and fusion to that of computing the ellipsoid that tightly bounds the intersection of two given ellipsoids. These two operations supersede the Minkowski sum and difference, affine transformation and intersection tight bounding of ellipsoids on which other ellipsoidal calculi are based. Actually, a Minkowski operation can be seen as a fusion followed by a propagation and an affine transformation as a particular case of propagation. Moreover, the presented formulation is numerically stable in the sense that it is immune to degeneracies of the involved ellipsoids and/or affine relations. Examples arising when manipulating uncertain geometric information in the context of the spatial interpretation of line drawings are extensively used as a testbed for the presented calculus.
Lankford, Christopher L; Does, Mark D
2018-02-01
Quantitative MRI may require correcting for nuisance parameters which can or must be constrained to independently measured or assumed values. The noise and/or bias in these constraints propagate to fitted parameters. For example, the case of refocusing pulse flip angle constraint in multiple spin echo T 2 mapping is explored. An analytical expression for the mean-squared error of a parameter of interest was derived as a function of the accuracy and precision of an independent estimate of a nuisance parameter. The expression was validated by simulations and then used to evaluate the effects of flip angle (θ) constraint on the accuracy and precision of T⁁2 for a variety of multi-echo T 2 mapping protocols. Constraining θ improved T⁁2 precision when the θ-map signal-to-noise ratio was greater than approximately one-half that of the first spin echo image. For many practical scenarios, constrained fitting was calculated to reduce not just the variance but the full mean-squared error of T⁁2, for bias in θ⁁≲6%. The analytical expression derived in this work can be applied to inform experimental design in quantitative MRI. The example application to T 2 mapping provided specific cases, depending on θ⁁ accuracy and precision, in which θ⁁ measurement and constraint would be beneficial to T⁁2 variance or mean-squared error. Magn Reson Med 79:673-682, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.
Czech Academy of Sciences Publication Activity Database
Ehala, Sille; Toman, Petr; Makrlík, E.; Kašička, Václav
2009-01-01
Roč. 1216, č. 45 (2009), s. 7927-7931 ISSN 0021-9673 R&D Projects: GA ČR(CZ) GA203/08/1428; GA AV ČR 1ET400500402 Institutional research plan: CEZ:AV0Z40550506; CEZ:AV0Z40500505 Keywords : affinity capillary electrophoresis * benzo-18-crown-6-ether * density functional theory Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 4.101, year: 2009
Affine and quasi-affine frames for rational dilations
DEFF Research Database (Denmark)
Bownik, Marcin; Lemvig, Jakob
2011-01-01
In this paper we extend the investigation of quasi-affine systems, which were originally introduced by Ron and Shen [J. Funct. Anal. 148 (1997), 408-447] for integer, expansive dilations, to the class of rational, expansive dilations. We show that an affine system is a frame if, and only if......, the corresponding family of quasi-affine systems are frames with uniform frame bounds. We also prove a similar equivalence result between pairs of dual affine frames and dual quasi-affine frames. Finally, we uncover some fundamental differences between the integer and rational settings by exhibiting an example...
Setty, Srinivas J.; Cefola, Paul J.; Montenbruck, Oliver; Fiedler, Hauke
2016-05-01
Catalog maintenance for Space Situational Awareness (SSA) demands an accurate and computationally lean orbit propagation and orbit determination technique to cope with the ever increasing number of observed space objects. As an alternative to established numerical and analytical methods, we investigate the accuracy and computational load of the Draper Semi-analytical Satellite Theory (DSST). The standalone version of the DSST was enhanced with additional perturbation models to improve its recovery of short periodic motion. The accuracy of DSST is, for the first time, compared to a numerical propagator with fidelity force models for a comprehensive grid of low, medium, and high altitude orbits with varying eccentricity and different inclinations. Furthermore, the run-time of both propagators is compared as a function of propagation arc, output step size and gravity field order to assess its performance for a full range of relevant use cases. For use in orbit determination, a robust performance of DSST is demonstrated even in the case of sparse observations, which is most sensitive to mismodeled short periodic perturbations. Overall, DSST is shown to exhibit adequate accuracy at favorable computational speed for the full set of orbits that need to be considered in space surveillance. Along with the inherent benefits of a semi-analytical orbit representation, DSST provides an attractive alternative to the more common numerical orbit propagation techniques.
Rudraraju, Siva Shankar; Garikipati, Krishna; Waas, Anthony M.; Bednarcyk, Brett A.
2013-01-01
The phenomenon of crack propagation is among the predominant modes of failure in many natural and engineering structures, often leading to severe loss of structural integrity and catastrophic failure. Thus, the ability to understand and a priori simulate the evolution of this failure mode has been one of the cornerstones of applied mechanics and structural engineering and is broadly referred to as "fracture mechanics." The work reported herein focuses on extending this understanding, in the context of through-thickness crack propagation in cohesive materials, through the development of a continuum-level multiscale numerical framework, which represents cracks as displacement discontinuities across a surface of zero measure. This report presents the relevant theory, mathematical framework, numerical modeling, and experimental investigations of through-thickness crack propagation in fiber-reinforced composites using the Variational Multiscale Cohesive Method (VMCM) developed by the authors.
Energy Technology Data Exchange (ETDEWEB)
Fiorina, D
1998-01-29
Some systems for the control and the surveillance of fast reactors are based on the characteristics of the ultrasonic wave propagation. We present here the results of a numerical and experimental study of ultrasonic propagation in a thermal turbulent medium. A numerical model, based on the technique of superposition of discrete Fourier modes for representing isotropic and homogeneous turbulence and on the Gaussian beam summation method for calculating the acoustic field, has been implemented in order to study the propagation of a point source wave in a bidimensional turbulent medium. Our model is based on the following principle: the medium is represented by a great number of independent realizations of a turbulent field and for each of them we calculate the acoustic field in a deterministic way. Statistics over a great number of realizations enable us to access to the different quantities of the distorted acoustic field: variance of the time of flight fluctuations, scintillation index and intensity probability density function. In the case of small fluctuations, the results for these three quantities are in a good agreement with analytical solutions. When the level of the fluctuations grows, the model predicts correct evolutions. However, a great sensitivity to the location of a receiver in the vicinity of a caustic has been proved. Calculations in the temporal domain have also been performed. They give an illustration of the possible effects of the turbulence on an impulsion signal. An experimental device, fitted with thermocouples and acoustic transducers, has been used to study the ultrasonic propagation in turbulent water. The different measures permitted to characterize the turbulent field and to get aware of the effect of the turbulence on the acoustic propagation. The acoustical measures agree well with the analytical solution of Chernov and Rytov. They are show the importance of the knowledge of the real spectrum of the fluctuations and the limitations of
Methods for quantifying T cell receptor binding affinities and thermodynamics
Piepenbrink, Kurt H.; Gloor, Brian E.; Armstrong, Kathryn M.; Baker, Brian M.
2013-01-01
αβ T cell receptors (TCRs) recognize peptide antigens bound and presented by class I or class II major histocompatibility complex (MHC) proteins. Recognition of a peptide/MHC complex is required for initiation and propagation of a cellular immune response, as well as the development and maintenance of the T cell repertoire. Here we discuss methods to quantify the affinities and thermodynamics of interactions between soluble ectodomains of TCRs and their peptide/MHC ligands, focusing on titration calorimetry, surface plasmon resonance, and fluorescence anisotropy. As TCRs typically bind ligand with weak-to-moderate affinities, we focus the discussion on means to enhance the accuracy and precision of low affinity measurements. In addition to further elucidating the biology of the T cell mediated immune response, more reliable low affinity measurements will aid with more probing studies with mutants or altered peptides that can help illuminate the physical underpinnings of how TCRs achieve their remarkable recognition properties. PMID:21609868
DEFF Research Database (Denmark)
Skjødt, Mette Louise
Yeast surface display is an effective tool for antibody affinity maturation because yeast can be used as an all-in-one workhorse to assemble, display and screen diversified antibody libraries. By employing the natural ability of yeast Saccharomyces cerevisiae to efficiently recombine multiple DNA...... laboratory conditions. A particular emphasis was put on using molecular techniques in conjunction with microenvironmental measurements (O2, pH, irradiance), a combination that is rarely found but provides a much more detailed understanding of “cause and effect” in complex natural systems...
David, P
2013-01-01
Propagation of Waves focuses on the wave propagation around the earth, which is influenced by its curvature, surface irregularities, and by passage through atmospheric layers that may be refracting, absorbing, or ionized. This book begins by outlining the behavior of waves in the various media and at their interfaces, which simplifies the basic phenomena, such as absorption, refraction, reflection, and interference. Applications to the case of the terrestrial sphere are also discussed as a natural generalization. Following the deliberation on the diffraction of the "ground? wave around the ear
Konapala, Goutam; Mishra, Ashok
2017-12-01
The quantification of spatio-temporal hydroclimatic extreme events is a key variable in water resources planning, disaster mitigation, and preparing climate resilient society. However, quantification of these extreme events has always been a great challenge, which is further compounded by climate variability and change. Recently complex network theory was applied in earth science community to investigate spatial connections among hydrologic fluxes (e.g., rainfall and streamflow) in water cycle. However, there are limited applications of complex network theory for investigating hydroclimatic extreme events. This article attempts to provide an overview of complex networks and extreme events, event synchronization method, construction of networks, their statistical significance and the associated network evaluation metrics. For illustration purpose, we apply the complex network approach to study the spatio-temporal evolution of droughts in Continental USA (CONUS). A different drought threshold leads to a new drought event as well as different socio-economic implications. Therefore, it would be interesting to explore the role of thresholds on spatio-temporal evolution of drought through network analysis. In this study, long term (1900-2016) Palmer drought severity index (PDSI) was selected for spatio-temporal drought analysis using three network-based metrics (i.e., strength, direction and distance). The results indicate that the drought events propagate differently at different thresholds associated with initiation of drought events. The direction metrics indicated that onset of mild drought events usually propagate in a more spatially clustered and uniform approach compared to onsets of moderate droughts. The distance metric shows that the drought events propagate for longer distance in western part compared to eastern part of CONUS. We believe that the network-aided metrics utilized in this study can be an important tool in advancing our knowledge on drought
Energy Technology Data Exchange (ETDEWEB)
Rongere, F X; Gibault, J
1994-05-01
Electricite de France, wishing to limit the accidental unavailability of its nuclear plants and to ensure their safety rigorously takes particular care to reduce the risk of fire. In this context, the Heat Transfer and Aerodynamics Branch of the Research and Development Division has been in charge of the design of numerical tools to simulate the fire propagation in buildings since 1985. Its program is articulated towards three axes which include : the development of the MAGIC software program, the characterization of the combustibles present in power plants, the development of methods for the use of the computer codes in the design of plants. This paper gives on overview of the activity in progress in this research fields. It illustrates also the applications performed and anticipated at Electricite de France of the numerical simulation in fire safety design. We discuss at the end of it the limitations and the development factors of these tool use. One of the later is the association of MAGIC software and the FIVE method. (authors). 15 refs., 10 figs., 2 tabs.
International Nuclear Information System (INIS)
Macias-Diaz, J.E.; Puri, A.
2007-01-01
In the present Letter, we simulate the propagation of binary signals in semi-infinite, mechanical chains of coupled oscillators harmonically driven at the end, by making use of the recently discovered process of nonlinear supratransmission. Our numerical results-which are based on a brand-new computational technique with energy-invariant properties-show an efficient and reliable transmission of information
Monitoring sediment-generated noise using submerged hydrophones is a surrogate method for measuring bed load transport in streams with the potential for improving estimates of bed load transport through widespread, inexpensive monitoring. Understanding acoustic signal propagation in natural stream e...
International Nuclear Information System (INIS)
Loupias, B.
2008-10-01
Plasma jets are often observed in the polar regions of Young Stellar Objects (YSO). For a better understanding of the whole processes at the origin of their formation and evolution, this research thesis aims at demonstrating the feasibility of a plasma jet generation by a power laser, and at investigating its characteristics. After a detailed description of Young Stellar Objects jets and an overview of theoretical models, the author describes some experiments performed with gas guns, pulsed machines and power lasers. He describes means of generation of a jet by laser interaction via strong shock propagation. He reports experimental work, describing the target, laser operating conditions and the determination of jet parameters: speed, temperature, density. Then, he introduces results obtained for plasma jet propagation in vacuum, describes their evolution with respect to initial conditions (target type, laser operating conditions), and identifies optimal conditions for generating a jet similar to that in astrophysical conditions. He considers their propagation in ambient medium like for YSO jets in interstellar medium. Two distinct cases are investigated: collision of two successive shocks in a gaseous medium, and propagation of a plasma jet in a gas jet
International Nuclear Information System (INIS)
Sebelin, E.; Peysson, Y.; Litaudon, X.; Moreau, D.
1997-09-01
In the context of complex Hilbert spaces is proved, around Lax-Milgram lemma, the existence and uniqueness of solutions associated to a class of stationary variational problems. This result is applied to the study of variational problems from the propagation equation of time-harmonic electromagnetic waves in confined tokamak plasmas. (author)
Energy Technology Data Exchange (ETDEWEB)
Sebelin, E.; Peysson, Y.; Litaudon, X.; Moreau, D. [Association Euratom-CEA, CEA Cadarache, 13 - Saint-Paul-lez-Durance (France). Dept. de Recherches sur la Fusion Controlee; Miellou, J.C. [Besancon Univ., 25 (France). Laboratoire d`Analyse Numerique; Lafitte, O. [CEA Limeil, 94 - Villeneuve-Saint-Georges (France)
1997-09-01
In the context of complex Hilbert spaces is proved, around Lax-Milgram lemma, the existence and uniqueness of solutions associated to a class of stationary variational problems. This result is applied to the study of variational problems from the propagation equation of time-harmonic electromagnetic waves in confined tokamak plasmas. (author) 21 refs.
International Nuclear Information System (INIS)
Fiorina, D.
1998-01-01
Some systems for the control and the surveillance of fast reactors are based on the characteristics of the ultrasonic wave propagation. We present here the results of a numerical and experimental study of ultrasonic propagation in a thermal turbulent medium. A numerical model, based on the technique of superposition of discrete Fourier modes for representing isotropic and homogeneous turbulence and on the Gaussian beam summation method for calculating the acoustic field, has been implemented in order to study the propagation of a point source wave in a bidimensional turbulent medium. Our model is based on the following principle: the medium is represented by a great number of independent realizations of a turbulent field and for each of them we calculate the acoustic field in a deterministic way. Statistics over a great number of realizations enable us to access to the different quantities of the distorted acoustic field: variance of the time of flight fluctuations, scintillation index and intensity probability density function. In the case of small fluctuations, the results for these three quantities are in a good agreement with analytical solutions. When the level of the fluctuations grows, the model predicts correct evolutions. However, a great sensitivity to the location of a receiver in the vicinity of a caustic has been proved. Calculations in the temporal domain have also been performed. They give an illustration of the possible effects of the turbulence on an impulsion signal. An experimental device, fitted with thermocouples and acoustic transducers, has been used to study the ultrasonic propagation in turbulent water. The different measures permitted to characterize the turbulent field and to get aware of the effect of the turbulence on the acoustic propagation. The acoustical measures agree well with the analytical solution of Chernov and Rytov. They are show the importance of the knowledge of the real spectrum of the fluctuations and the limitations of
The solutions of affine and conformal affine Toda field theory
International Nuclear Information System (INIS)
Papadopoulos, G.; Spence, B.
1994-02-01
We give new formulations of the solutions of the field equations of the affine Toda and conformal affine Toda theories on a cylinder and two-dimensional Minkowski space-time. These solutions are parameterised in terms of initial data and the resulting covariant phase spaces are diffeomorphic to the Hamiltonian ones. We derive the fundamental Poisson brackets of the parameters of the solutions and give the general static solutions for the affine theory. (authors). 10 refs
Nakajima, Kazuki; Kinoshita, Mitsuhiro; Oda, Yasuo; Masuko, Takashi; Kaku, Hanae; Shibuya, Naoto; Kakehi, Kazuaki
2004-09-01
We developed capillary affinity electrophoresis (CAE) to analyze the molecular interaction between carbohydrate chains and proteins in solution state. A mixture of oligosaccharides derived from a glycoprotein was labeled with 8-aminopyrene-1,3,6-trisulfonate (APTS), and used as glycan library without isolation. Interaction of a carbohydrate-binding protein with each oligosaccharide in the mixture could be simultaneously observed, and relative affinities of oligosaccharides toward the protein were accurately determined. In this study, we applied CAE to detect the presence of lectins in some plants (Japanese elderberry bark and tulip bulb). In the crude extract of the elderberry bark, binding activity toward sialo-carbohydrate chains could be easily detected. We also examined the presence of lectins in the crude extract of tulip bulbs and determined the detailed carbohydrate-binding specificity of Tulipa gesneriana agglutinin (TGA), one of the lectins from tulip bulbs. Kinetic studies demonstrated that TGA showed novel carbohydrate-binding specificity and preferentially recognized triantennary oligosaccharides with Gal residues at nonreducing termini and a Fuc residue linked through alpha(1-6) linkage at chitobiose portion of the reducing termini but not tetraantennary carbohydrates. The results described here indicate that CAE will be a valuable method for both screening of lectins in natural sources and determination of their detailed carbohydrate-binding specificities.
Gasulla, I; Capmany, J
2006-10-02
We present a closed-form expression for the evaluation of the transfer function of a multimode fiber (MMF) link based on the electric field propagation model. After validating the result we investigate the potential for broadband transmission in regions far from baseband. We find that MMFs offer the potential for broadband ROF transmission in the microwave and millimetre wave regions in short and middle reach distances.
International Nuclear Information System (INIS)
Litaize, O.
2000-01-01
The goal of this thesis is to study the neutron propagation by reflection from lacunar medium interfaces. The most efficient method to calculate this type of propagation is to use the concept of albedo. Actual version of NARCISSE code uses a simple formulation of angular differential albedos and so, can only treat single reflections. Multiple reflections treatment needs the knowledge of neutron spectrum after reflection. This energetic information is contained in double angular and energy differential albedos. The first step of this study consists to generate these albedos for various materials. Several methods have been tested and the Monte Carlo method was retained. A new estimator has been developed and validated in the Mote Carlo transport code TRIPOLI-4. It computes, during the simulation of the neutron history, the angular and energy reflection probability at each collision site. The second step consists to generate an interpolation scheme and albedo libraries for various materials. A new version of NARCISSE was developed to use these libraries and the interpolation module. Spectrum and dose rates comparisons were made between codes to validate these albedos. The neutron propagation by multiple reflections can be studied now, by using this new version of Narcisse. (author)
Liubartseva, Svitlana; Coppini, Giovanni; Ciliberti, Stefania Angela; Lecci, Rita
2017-04-01
In operational oil spill modeling, MEDSLIK-II (De Dominicis et al., 2013) focuses on the reliability of the oil drift and fate predictions routinely fed by operational oceanographic and atmospheric forecasting chain. Uncertainty calculations enhance oil spill forecast efficiency, supplying probability maps to quantify the propagation of various uncertainties. Recently, we have developed the methodology that allows users to evaluate the variability of oil drift forecast caused by uncertain data on the initial oil spill conditions (Liubartseva et al., 2016). One of the key methodological aspects is a reasonable choice of a way of parameter perturbation. In case of starting oil spill location and time, these scalars might be treated as independent random parameters. If we want to perturb the underlying ocean currents and wind, we have to deal with deterministic vector parameters. To a first approximation, we suggest rolling forecasts as a set of perturbed ocean currents and wind. This approach does not need any extra hydrodynamic calculations, and it is quick enough to be performed in web-based applications. The capabilities of the proposed methodology are explored using the Black Sea Forecasting System (BSFS) recently implemented by Ciliberti et al. (2016) for the Copernicus Marine Environment Monitoring Service (http://marine.copernicus.eu/services-portfolio/access-to-products). BSFS horizontal resolution is 1/36° in zonal and 1/27° in meridional direction (ca. 3 km). Vertical domain discretization is represented by 31 unevenly spaced vertical levels. Atmospheric wind data are provided by the European Centre for Medium-Range Weather Forecasts (ECMWF) forecasts, at 1/8° (ca. 12.5 km) horizontal and 6-hour temporal resolution. A great variety of probability patterns controlled by different underlying flows is represented including the cyclonic Rim Current, flow bifurcations in anticyclonic eddies (e.g., Sevastopol and Batumi), northwestern shelf circulation, etc
Fujii, Satoshi; Odawara, Tatsuya; Yamada, Haruya; Omori, Tatsuya; Hashimoto, Ken-Ya; Torii, Hironori; Umezawa, Hitoshi; Shikata, Shinichi
2013-05-01
Diamond has the highest known SAW phase velocity, sufficient for applications in the gigahertz range. However, although numerous studies have demonstrated SAW devices on polycrystalline diamond thin films, all have had much larger propagation loss than single-crystal materials such as LiNbO3. Hence, in this study, we fabricated and characterized one-port SAW resonators on single-crystal diamond substrates synthesized using a high-pressure and high-temperature method to identify and minimize sources of propagation loss. A series of one-port resonators were fabricated with the interdigital transducer/ AlN/diamond structure and their characteristics were measured. The device with the best performance exhibited a resonance frequency f of 5.3 GHz, and the equivalent circuit model gave a quality factor Q of 5509. Thus, a large fQ product of approximately 2.9 × 10(13) was obtained, and the propagation loss was found to be only 0.006 dB/wavelength. These excellent properties are attributed mainly to the reduction of scattering loss in a substrate using a single-crystal diamond, which originated from the grain boundary of diamond and the surface roughness of the AlN thin film and the diamond substrate. These results show that single-crystal diamond SAW resonators have great potential for use in low-noise super-high-frequency oscillators.
Merten, O W; Reiter, S; Scheirer, W; Katinger, H
1983-01-01
The human cell line PLC/PRF/5 (5) was used for the production of hepatitis B surface antigen subtype ad (HBsAg ad) and purified by affinity chromatography (AC) with monoclonal antibodies (mAb). mAb to HBsAg from mouse ascites have been purified by Protein A - AC prior coupling to AH-Sepharose 4B (Pharmacia). The combined procedure of ammonium-sulphate-precipitation of HBsAg from culture supernatants and immunosorbent-AC leads to approx. 700-fold purification. ELISA results using the mAb and the HBsAg for diagnostics of human serum, positive for anti-HBsAg-antibodies correlate with the RIA (AUSAB, Abbott).
Directory of Open Access Journals (Sweden)
Ruijing Gan
2015-01-01
Full Text Available Accurate incidence forecasting of infectious disease provides potentially valuable insights in its own right. It is critical for early prevention and may contribute to health services management and syndrome surveillance. This study investigates the use of a hybrid algorithm combining grey model (GM and back propagation artificial neural networks (BP-ANN to forecast hepatitis B in China based on the yearly numbers of hepatitis B and to evaluate the method’s feasibility. The results showed that the proposal method has advantages over GM (1, 1 and GM (2, 1 in all the evaluation indexes.
Gan, Ruijing; Chen, Xiaojun; Yan, Yu; Huang, Daizheng
2015-01-01
Accurate incidence forecasting of infectious disease provides potentially valuable insights in its own right. It is critical for early prevention and may contribute to health services management and syndrome surveillance. This study investigates the use of a hybrid algorithm combining grey model (GM) and back propagation artificial neural networks (BP-ANN) to forecast hepatitis B in China based on the yearly numbers of hepatitis B and to evaluate the method's feasibility. The results showed that the proposal method has advantages over GM (1, 1) and GM (2, 1) in all the evaluation indexes.
Dagrau, Franck; Coulouvrat, François; Marchiano, Régis; Héron, Nicolas
2008-06-01
Dassault Aviation as a civil aircraft manufacturer is studying the feasibility of a supersonic business jet with the target of an "acceptable" sonic boom at the ground level, and in particular in case of focusing. A sonic boom computational process has been performed, that takes into account meteorological effects and aircraft manoeuvres. Turn manoeuvres and aircraft acceleration create zones of convergence of rays (caustics) which are the place of sound amplification. Therefore two elements have to be evaluated: firstly the geometrical position of the caustics, and secondly the noise level in the neighbourhood of the caustics. The modelling of the sonic boom propagation is based essentially on the assumptions of geometrical acoustics. Ray tracing is obtained according to Fermat's principle as paths that minimise the propagation time between the source (the aircraft) and the receiver. Wave amplitude and time waveform result from the solution of the inviscid Burgers' equation written along each individual ray. The "age variable" measuring the cumulative nonlinear effects is linked to the ray tube area. Caustics are located as the place where the ray tube area vanishes. Since geometrical acoustics does not take into account diffraction effects, it breaks down in the neighbourhood of caustics where it would predict unphysical infinite pressure amplitude. The aim of this study is to describe an original method for computing the focused noise level. The approach involves three main steps that can be summarised as follows. The propagation equation is solved by a forward marching procedure split into three successive steps: linear propagation in a homogeneous medium, linear perturbation due to the weak heterogeneity of the medium, and non-linear effects. The first step is solved using an "exact" angular spectrum algorithm. Parabolic approximation is applied only for the weak perturbation due to the heterogeneities. Finally, non linear effects are performed by solving the
1982-08-25
hoth real and complex; and () compute the propagation speed in the acoustic cal Ibr:ator. (continued on reverse) DD IARM3 1473 EDITION OF I NOVSSIS...FORMAT (3F15.0) 0131 GO TO 230 0132 690 CONTINUE 0133 END 50 *> SUBROUTINES SUBROUTINE: DET C C SUBROUTINE DET C DECEMBER, 1980 C EDITED BY TINA RUGGIERO...33 AISA =AKDA/BAMS 0008 02A=AKA**’-AKDA**2 0009 S2A=AKA**2-AKSA**2 0010 IF (RHM) 65P65P40 0011 40 AKFA-AKDA/COCD 0012 OF2A-AKA**2-AKFA**2 0013 IF (OF2A
Smooth surfaces from bilinear patches: Discrete affine minimal surfaces
Kä ferbö ck, Florian; Pottmann, Helmut
2013-01-01
Motivated by applications in freeform architecture, we study surfaces which are composed of smoothly joined bilinear patches. These surfaces turn out to be discrete versions of negatively curved affine minimal surfaces and share many properties
Energy Technology Data Exchange (ETDEWEB)
Bakhshpour, Monireh; Derazshamshir, Ali; Bereli, Nilay [Department of Chemistry, Biochemistry Division, Hacettepe University, Ankara (Turkey); Elkak, Assem [Laboratory of “Valorisation des Ressources Naturelles et Produits de Santé (VRNPS)”, Doctoral School of Sciences and Technology, Lebanese University, Rafic Hariri University Campus, Hadath (Lebanon); Denizli, Adil, E-mail: denizli@hacettepe.edu [Department of Chemistry, Biochemistry Division, Hacettepe University, Ankara (Turkey)
2016-04-01
The immobilized metal-affinity chromatography (IMAC) has gained significant interest as a widespread separation and purification tool for therapeutic proteins, nucleic acids and other biological molecules. The enormous potential of IMAC for proteins with natural surface exposed-histidine residues and for recombinant proteins with histidine clusters. Cryogels as monolithic materials have recently been proposed as promising chromatographic adsorbents for the separation of biomolecules in downstream processing. In the present study, IMAC cryogels have been synthesized and utilized for the adsorption and separation of immunoglobulin G (IgG) from IgG solution and whole human plasma. For this purpose, Cu(II)-ions were coupled to poly(hydroxyethyl methacrylate) PHEMA using poly(ethylene imine) (PEI) as the chelating ligand. In this study the cryogels formation optimized by the varied proportion of PEI from 1% to 15% along with different amounts of Cu (II) as chelating metal. The prepared cryogels were characterized by scanning electron microscopy, Fourier transform infrared spectroscopy, and thermogravimetric analysis. The [PHEMA/PEI]–Cu(II) cryogels were assayed for their capability to bind the human IgG from aqueous solutions. The IMAC cryogels were found to have high affinity toward human IgG. The adsorption of human IgG was investigated onto the PHEMA/PEI cryogels with (10% PEI) and the concentration of Cu (II) varied as 10, 50, 100 and 150 mg/L. The separation of human IgG was achieved in one purification step at pH 7.4. The maximum adsorption capacity was observed at the [PHEMA/PEI]–Cu(II) (10% PEI) with 72.28 mg/g of human IgG. The purification efficiency and human IgG purity were investigated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). - Highlights: • Cu(II)-ions were coupled to PHEMA using PEI as the chelating ligand. • Cu(II) chelated [PHEMA/PEI] cryogels for IgG separation were produced. • Maximum IgG adsorption capacity
International Nuclear Information System (INIS)
Bakhshpour, Monireh; Derazshamshir, Ali; Bereli, Nilay; Elkak, Assem; Denizli, Adil
2016-01-01
The immobilized metal-affinity chromatography (IMAC) has gained significant interest as a widespread separation and purification tool for therapeutic proteins, nucleic acids and other biological molecules. The enormous potential of IMAC for proteins with natural surface exposed-histidine residues and for recombinant proteins with histidine clusters. Cryogels as monolithic materials have recently been proposed as promising chromatographic adsorbents for the separation of biomolecules in downstream processing. In the present study, IMAC cryogels have been synthesized and utilized for the adsorption and separation of immunoglobulin G (IgG) from IgG solution and whole human plasma. For this purpose, Cu(II)-ions were coupled to poly(hydroxyethyl methacrylate) PHEMA using poly(ethylene imine) (PEI) as the chelating ligand. In this study the cryogels formation optimized by the varied proportion of PEI from 1% to 15% along with different amounts of Cu (II) as chelating metal. The prepared cryogels were characterized by scanning electron microscopy, Fourier transform infrared spectroscopy, and thermogravimetric analysis. The [PHEMA/PEI]–Cu(II) cryogels were assayed for their capability to bind the human IgG from aqueous solutions. The IMAC cryogels were found to have high affinity toward human IgG. The adsorption of human IgG was investigated onto the PHEMA/PEI cryogels with (10% PEI) and the concentration of Cu (II) varied as 10, 50, 100 and 150 mg/L. The separation of human IgG was achieved in one purification step at pH 7.4. The maximum adsorption capacity was observed at the [PHEMA/PEI]–Cu(II) (10% PEI) with 72.28 mg/g of human IgG. The purification efficiency and human IgG purity were investigated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). - Highlights: • Cu(II)-ions were coupled to PHEMA using PEI as the chelating ligand. • Cu(II) chelated [PHEMA/PEI] cryogels for IgG separation were produced. • Maximum IgG adsorption capacity
Hemoglobin affinity in Andean rodents
Directory of Open Access Journals (Sweden)
HRVOJ OSTOJIC
2002-01-01
Full Text Available Blood hemoglobin oxygen affinity (P50 was measured in three Andean species and in the laboratory rat (control, all raised near sea level. Chinchilla lanigera (Molina, 1792 has an altitudinal habitat range from low Andean slopes up to 3000 m., while Chinchilla brevicaudata (Waterhouse, 1848 has an altitudinal range from 3000 to 5000 m. The laboratory type guinea pig, wild type guinea pig (Cavia porcellus, (Waterhouse, 1748, and laboratory rat (Rattus norvegicus were also raised at sea level. The Andean species had high hemoglobin oxygen affinities (low P50 compared with the rat. Chinchilla brevicaudata had a higher affinity than Chinchilla lanigera. The wild type guinea pig had a higher affinity than the laboratory type. As has been shown in other species, this is another example of an inverse correlation between the altitude level and the P50 values. This is the first hemoglobin oxygen affinity study in Chinchilla brevicaudata.
Zhong, P; Chuong, C J; Preminger, G M
1993-07-01
To better understand the mechanism of stone fragmentation during extracorporeal shock wave lithotripsy (ESWL), the model developed in Part I [P. Zhong and C.J. Chuong, J. Acoust. Soc. Am. 94, 19-28 (1993)] is applied to study cavitation microjet impingement and its resultant shock wave propagation in renal calculi. Impact pressure at the stone boundary and stress, strain at the propagating shock fronts in the stone were calculated for typical ESWL loading conditions. At the anterior surface of the stone, the jet induced compressive stress can vary from 0.82 approximately 4 times that of the water hammer pressure depending on the contact angles; whereas the jet-induced shear stress can achieve its maximum, with a magnitude of 30% approximately 54% of the water hammer pressure, near the detachment of the longitudinal (or P) wave in the solid. Comparison of model predictions with material failure strengths of renal calculi suggests that jet impact can lead to stone surface erosion by combined compressive and shear loadings at the jet impacting surface, and spalling failure by tensile forces at the distal surface of the stone. Comparing responses from four different stone types suggests that cystine is the most difficult stone to fragment in ESWL, as observed from clinical experience.
Mapping Affinities in Academic Organizations
Directory of Open Access Journals (Sweden)
Dario Rodighiero
2018-02-01
Full Text Available Scholarly affinities are one of the most fundamental hidden dynamics that drive scientific development. Some affinities are actual, and consequently can be measured through classical academic metrics such as co-authoring. Other affinities are potential, and therefore do not leave visible traces in information systems; for instance, some peers may share interests without actually knowing it. This article illustrates the development of a map of affinities for academic collectives, designed to be relevant to three audiences: the management, the scholars themselves, and the external public. Our case study involves the School of Architecture, Civil and Environmental Engineering of EPFL, hereinafter ENAC. The school consists of around 1,000 scholars, 70 laboratories, and 3 institutes. The actual affinities are modeled using the data available from the information systems reporting publications, teaching, and advising scholars, whereas the potential affinities are addressed through text mining of the publications. The major challenge for designing such a map is to represent the multi-dimensionality and multi-scale nature of the information. The affinities are not limited to the computation of heterogeneous sources of information; they also apply at different scales. The map, thus, shows local affinities inside a given laboratory, as well as global affinities among laboratories. This article presents a graphical grammar to represent affinities. Its effectiveness is illustrated by two actualizations of the design proposal: an interactive online system in which the map can be parameterized, and a large-scale carpet of 250 square meters. In both cases, we discuss how the materiality influences the representation of data, in particular the way key questions could be appropriately addressed considering the three target audiences: the insights gained by the management and their consequences in terms of governance, the understanding of the scholars’ own
Compound immobilization and drug-affinity chromatography.
Rix, Uwe; Gridling, Manuela; Superti-Furga, Giulio
2012-01-01
Bioactive small molecules act through modulating a yet unpredictable number of targets. It is therefore of critical importance to define the cellular target proteins of a compound as an entry point to understanding its mechanism of action. Often, this can be achieved in a direct fashion by chemical proteomics. As with any affinity chromatography, immobilization of the bait to a solid support is one of the earliest and most crucial steps in the process. Interfering with structural features that are important for identification of a target protein will be detrimental to binding affinity. Also, many molecules are sensitive to heat or to certain chemicals, such as acid or base, and might be destroyed during the process of immobilization, which therefore needs to be not only efficient, but also mild. The subsequent affinity chromatography step needs to preserve molecular and conformational integrity of both bait compound and proteins in order to result in the desired specific enrichment while ensuring a high level of compatibility with downstream analysis by mass spectrometry. Thus, the right choice of detergent, buffer, and protease inhibitors is also essential. This chapter describes a widely applicable procedure for the immobilization of small molecule drugs and for drug-affinity chromatography with subsequent protein identification by mass spectrometry.
Robotti, Andrea; Natale, Massimo; Albo, Alessandra Giuliano; Lis, Katarzyna; Perga, Simona; Marnetto, Fabiana; Gilli, Francesca; Bertolotto, Antonio
2010-09-01
Plasma acute-phase proteins (APPs) glyco-isoforms are important biomarkers of inflammatory processes such as those occurring in multiple sclerosis (MS). Specific analysis of these proteins is often hampered by sample biochemical complexity. The aim of our study was to set up a method to accurately visualize, identify and quantify APPs glyco-isoforms in human serum. An enrichment strategy based on affinity chromatography using the carbohydrate-binding proteins concanavalin A (ConA) and erythrina cristagalli lectin (ECL) was applied to pooled serum samples from 15 patients and 9 healthy individuals. Image analysis of 2-DE detected 30 spots with a fold change higher than 1.5. A total of 14 were statistically significant (p valuewell known. Performing galectin-3 binding and Western blotting, we were able to demonstrate a correlation between hybrid type glyco-isoforms of β-haptoglobin and MS. In conclusion, although the patho-physiological role of the identified species still remains unclear and further validations are needed, these findings may have a relevant impact on disease-specific marker identification approaches.
Ma, Liyun; Li, Jing; Zhao, Juan; Liao, Han; Xu, Li; Shi, Zhi-guo
2016-01-01
In the current study, novel featured silica, named penetrable silica, simultaneously containing macropores and mesopores, was immobilized with bovine serum albumin (BSA) via Schiff base method. The obtained BSA-SiO2 was employed as the high-performance liquid chromatographic (HPLC) stationary phase. Firstly, D- and L-tryptophan were used as probes to investigate the chiral separation ability of the BSA-SiO2 stationary phase. An excellent enantioseparation factor was obtained up to 4.3 with acceptable stability within at least 1 month. Next, the BSA-SiO2 stationary phase was applied to study the interaction between imatinib mesylate (IM) and BSA by frontal affinity chromatography. A single type of binding site was found for IM with the immobilized BSA, and the hydrogen-bonding and van der Waals interactions were expected to be contributing interactions based on the thermodynamic studies, and this was a spontaneous process. Compared to the traditional silica for HPLC stationary phase, the proposed penetrable silica microsphere possessed a larger capacity to bond more BSA, minimizing column overloading effects and enhancing enantioseparation ability. In addition, the lower running column back pressure and fast mass transfer were meaningful for the column stability and lifetime. It was a good substrate to immobilize biomolecules for fast chiral resolution and screening drug-protein interactions.
Knutsson, Magnus; Åbom, Mats
2009-02-01
Charge air coolers (CACs) are used on turbocharged internal combustion engines to enhance the overall gas-exchange performance. The cooling of the charged air results in higher density and thus volumetric efficiency. It is also important for petrol engines that the knock margin increases with reduced charge air temperature. A property that is still not very well investigated is the sound transmission through a CAC. The losses, due to viscous and thermal boundary layers as well as turbulence, in the narrow cooling tubes result in frequency dependent attenuation of the transmitted sound that is significant and dependent on the flow conditions. Normally, the cross-sections of the cooling tubes are neither circular nor rectangular, which is why no analytical solution accounting for a superimposed mean flow exists. The cross-dimensions of the connecting tanks, located on each side of the cooling tubes, are large compared to the diameters of the inlet and outlet ducts. Three-dimensional effects will therefore be important at frequencies significantly lower than the cut-on frequencies of the inlet/outlet ducts. In this study the two-dimensional finite element solution scheme for sound propagation in narrow tubes, including the effect of viscous and thermal boundary layers, originally derived by Astley and Cummings [Wave propagation in catalytic converters: Formulation of the problem and finite element scheme, Journal of Sound and Vibration 188 (5) (1995) 635-657] is used to extract two-ports to represent the cooling tubes. The approximate solutions for sound propagation, accounting for viscothermal and turbulent boundary layers derived by Dokumaci [Sound transmission in narrow pipes with superimposed uniform mean flow and acoustic modelling of automobile catalytic converters, Journal of Sound and Vibration 182 (5) (1995) 799-808] and Howe [The damping of sound by wall turbulent shear layers, Journal of the Acoustical Society of America 98 (3) (1995) 1723-1730], are
International Nuclear Information System (INIS)
Moore, John J.; Reigel, Marissa M.; Donohoue, Collin D.
2009-01-01
The project uses an exothermic combustion synthesis reaction, termed self-propagating high-temperature synthesis (SHS), to produce high quality, reproducible nitride fuels and other ceramic type nuclear fuels (cercers and cermets, etc.) in conjunction with the fabrication of transmutation fuels. The major research objective of the project is determining the fundamental SHS processing parameters by first using manganese as a surrogate for americium to produce dense Zr-Mn-N ceramic compounds. These fundamental principles will then be transferred to the production of dense Zr-Am-N ceramic materials. A further research objective in the research program is generating fundamental SHS processing data to the synthesis of (i) Pu-Am-Zr-N and (ii) U-Pu-Am-N ceramic fuels. In this case, Ce will be used as the surrogate for Pu, Mn as the surrogate for Am, and depleted uranium as the surrogate for U. Once sufficient fundamental data has been determined for these surrogate systems, the information will be transferred to Idaho National Laboratory (INL) for synthesis of Zr-Am-N, Pu-Am-Zr-N and U-Pu-Am-N ceramic fuels. The high vapor pressures of americium (Am) and americium nitride (AmN) are cause for concern in producing nitride ceramic nuclear fuel that contains Am. Along with the problem of Am retention during the sintering phases of current processing methods, are additional concerns of producing a consistent product of desirable homogeneity, density and porosity. Similar difficulties have been experienced during the laboratory scale process development stage of producing metal alloys containing Am wherein compact powder sintering methods had to be abandoned. Therefore, there is an urgent need to develop a low-temperature or low-heat fuel fabrication process for the synthesis of Am-containing ceramic fuels. Self-propagating high temperature synthesis (SHS), also called combustion synthesis, offers such an alternative process for the synthesis of Am nitride fuels. Although SHS
Chun, Sehun
2017-07-01
Applying the method of moving frames to Maxwell's equations yields two important advancements for scientific computing. The first is the use of upwind flux for anisotropic materials in Maxwell's equations, especially in the context of discontinuous Galerkin (DG) methods. Upwind flux has been available only to isotropic material, because of the difficulty of satisfying the Rankine-Hugoniot conditions in anisotropic media. The second is to solve numerically Maxwell's equations on curved surfaces without the metric tensor and composite meshes. For numerical validation, spectral convergences are displayed for both two-dimensional anisotropic media and isotropic spheres. In the first application, invisible two-dimensional metamaterial cloaks are simulated with a relatively coarse mesh by both the lossless Drude model and the piecewisely-parametered layered model. In the second application, extremely low frequency propagation on various surfaces such as spheres, irregular surfaces, and non-convex surfaces is demonstrated.
Brites, Carlos D. S.; Lima, Patrícia P.; Silva, Nuno J. O.; Millán, Angel; Amaral, Vitor S.; Palacio, Fernando; Carlos, Luís D.
2013-07-01
There is an increasing demand for accurate, non-invasive and self-reference temperature measurements as technology progresses into the nanoscale. This is particularly so in micro- and nanofluidics where the comprehension of heat transfer and thermal conductivity mechanisms can play a crucial role in areas as diverse as energy transfer and cell physiology. Here we present two luminescent ratiometric nanothermometers based on a magnetic core coated with an organosilica shell co-doped with Eu3+ and Tb3+ chelates. The design of the hybrid host and chelate ligands permits the working of the nanothermometers in a nanofluid at 293-320 K with an emission quantum yield of 0.38 +/- 0.04, a maximum relative sensitivity of 1.5% K-1 at 293 K and a spatio-temporal resolution (constrained by the experimental setup) of 64 × 10-6 m/150 × 10-3 s (to move out of 0.4 K - the temperature uncertainty). The heat propagation velocity in the nanofluid, (2.2 +/- 0.1) × 10-3 m s-1, was determined at 294 K using the nanothermometers' Eu3+/Tb3+ steady-state spectra. There is no precedent of such an experimental measurement in a thermographic nanofluid, where the propagation velocity is measured from the same nanoparticles used to measure the temperature.There is an increasing demand for accurate, non-invasive and self-reference temperature measurements as technology progresses into the nanoscale. This is particularly so in micro- and nanofluidics where the comprehension of heat transfer and thermal conductivity mechanisms can play a crucial role in areas as diverse as energy transfer and cell physiology. Here we present two luminescent ratiometric nanothermometers based on a magnetic core coated with an organosilica shell co-doped with Eu3+ and Tb3+ chelates. The design of the hybrid host and chelate ligands permits the working of the nanothermometers in a nanofluid at 293-320 K with an emission quantum yield of 0.38 +/- 0.04, a maximum relative sensitivity of 1.5% K-1 at 293 K and a spatio
Propagation of epithermal neutrons in the empty mesh of the EDF3 reactor. Application of Zeus IV
International Nuclear Information System (INIS)
Brisbois, Jacques; Sonnet, Alain; Rafalovitch, Armand
1969-10-01
The authors report the verification of the Zeus 4 Monte Carlo code by applying it to an actual example of neutron propagation in a large enclosure, the empty mesh of the EDF3 reactor, supplied through the box holes (for the passage of heat transfer fluid ducts). This enclosure is represented by 105 parallelepipedic meshes in which are placed 4 plane and square sources of same cross section as the holes, and emitting inwards in cos θ. Source intensity is determined by flow rate measurements during tests in the air, interpreted by a Zeus-based calculation and channel power measurements during a 387 MW level operation. The presence of ducts is taken into account by applying a global attenuation coefficient to the sources. Calculation and experiment results agree very well in view of geometry complexity [fr
Sun, Jiaqi; Xie, Yuchen; Ye, Wenxing; Ho, Jeffrey; Entezari, Alireza; Blackband, Stephen J.
2013-01-01
In this paper, we present a novel dictionary learning framework for data lying on the manifold of square root densities and apply it to the reconstruction of diffusion propagator (DP) fields given a multi-shell diffusion MRI data set. Unlike most of the existing dictionary learning algorithms which rely on the assumption that the data points are vectors in some Euclidean space, our dictionary learning algorithm is designed to incorporate the intrinsic geometric structure of manifolds and performs better than traditional dictionary learning approaches when applied to data lying on the manifold of square root densities. Non-negativity as well as smoothness across the whole field of the reconstructed DPs is guaranteed in our approach. We demonstrate the advantage of our approach by comparing it with an existing dictionary based reconstruction method on synthetic and real multi-shell MRI data. PMID:24684004
Wei, Wang; Binwu, He
2008-12-01
According to the notion of Lp-affine surface area by Lutwak, in this paper, we introduce the concept of Lp-dual affine surface area. Further, we establish the affine isoperimetric inequality and the Blaschke-Santaló inequality for Lp-dual affine surface area. Besides, the dual Brunn-Minkowski inequality for Lp-dual affine surface area is presented.
Energy Technology Data Exchange (ETDEWEB)
Huseynli, Sabina; Baydemir, Gözde; Sarı, Esma [Department of Chemistry, Biochemistry Division, Hacettepe University, Ankara (Turkey); Elkak, Assem [Laboraory of “Valorisation des Ressources Naturelles et Produits de Santé (VRNPS)”, Doctoral School of Sciences and Technology, Lebanese University, Rafic Hariri University Campus, Hadath (Lebanon); Denizli, Adil, E-mail: denizli@hacettepe.edu.tr [Department of Chemistry, Biochemistry Division, Hacettepe University, Ankara (Turkey)
2015-01-01
Naturally produced by the human immune system, immunoglobulin nowadays is widely used for in vivo and in vitro purposes. The increased needs for pure immunoglobulin have prompted researchers to find new immunoglobulin chromatographic separation processes. Cryogels as chromatographic adsorbents, congregate several mechanical features including good compatibility, large pore structure, flexibility, short diffusion pathway and stability. These different characteristics make them a good alternative to conventional chromatographic methods and allowing their potential use in separation technology. In the present study, two sets of poly(2-hydroxyethyl methacrylate) (PHEMA) based beads were prepared and functionalized with Reactive Red 120 (RR) and Reactive Green HE 4BD (RG) dyes, and then embedded into supermacroporous cryogels. The morphology, physical and chemical features of the prepared bead embedded composite cryogel discs (CCDs) were performed by scanning electron microscopy (SEM), swelling test, elemental analysis and Fourier transform infrared spectroscopy (FTIR). The results showed that the embedded composite cryogel discs have a specific surface area of 192.0 m{sup 2}/g with maximum adsorption capacity of HIgG 239.8 mg/g for the RR functionalized CCD and 170 mg/g for RG functionalized CCD columns, both at pH 6.2. - Highlights: • Dye attached composite cryogel discs were prepared to separate HIgG subclasses. • Composite cryogels characterized by swelling, FTIR, SEM and elemental analysis. • Reactive Green HE 4B and Reactive Red 120 dyes were used as the affinity ligand. • HIgG and subclasses were separate from both aqueous solution and human plasma.
International Nuclear Information System (INIS)
Huseynli, Sabina; Baydemir, Gözde; Sarı, Esma; Elkak, Assem; Denizli, Adil
2015-01-01
Naturally produced by the human immune system, immunoglobulin nowadays is widely used for in vivo and in vitro purposes. The increased needs for pure immunoglobulin have prompted researchers to find new immunoglobulin chromatographic separation processes. Cryogels as chromatographic adsorbents, congregate several mechanical features including good compatibility, large pore structure, flexibility, short diffusion pathway and stability. These different characteristics make them a good alternative to conventional chromatographic methods and allowing their potential use in separation technology. In the present study, two sets of poly(2-hydroxyethyl methacrylate) (PHEMA) based beads were prepared and functionalized with Reactive Red 120 (RR) and Reactive Green HE 4BD (RG) dyes, and then embedded into supermacroporous cryogels. The morphology, physical and chemical features of the prepared bead embedded composite cryogel discs (CCDs) were performed by scanning electron microscopy (SEM), swelling test, elemental analysis and Fourier transform infrared spectroscopy (FTIR). The results showed that the embedded composite cryogel discs have a specific surface area of 192.0 m 2 /g with maximum adsorption capacity of HIgG 239.8 mg/g for the RR functionalized CCD and 170 mg/g for RG functionalized CCD columns, both at pH 6.2. - Highlights: • Dye attached composite cryogel discs were prepared to separate HIgG subclasses. • Composite cryogels characterized by swelling, FTIR, SEM and elemental analysis. • Reactive Green HE 4B and Reactive Red 120 dyes were used as the affinity ligand. • HIgG and subclasses were separate from both aqueous solution and human plasma
Representations of affine Hecke algebras
Xi, Nanhua
1994-01-01
Kazhdan and Lusztig classified the simple modules of an affine Hecke algebra Hq (q E C*) provided that q is not a root of 1 (Invent. Math. 1987). Ginzburg had some very interesting work on affine Hecke algebras. Combining these results simple Hq-modules can be classified provided that the order of q is not too small. These Lecture Notes of N. Xi show that the classification of simple Hq-modules is essentially different from general cases when q is a root of 1 of certain orders. In addition the based rings of affine Weyl groups are shown to be of interest in understanding irreducible representations of affine Hecke algebras. Basic knowledge of abstract algebra is enough to read one third of the book. Some knowledge of K-theory, algebraic group, and Kazhdan-Lusztig cell of Cexeter group is useful for the rest
Contractions of affine spherical varieties
International Nuclear Information System (INIS)
Arzhantsev, I V
1999-01-01
The language of filtrations and contractions is used to describe the class of G-varieties obtainable as the total spaces of the construction of contraction applied to affine spherical varieties, which is well-known in invariant theory. These varieties are local models for arbitrary affine G-varieties of complexity 1 with a one-dimensional categorical quotient. As examples, reductive algebraic semigroups and three-dimensional SL 2 -varieties are considered
Riva, Fabio; Milanese, Lucio; Ricci, Paolo
2017-10-01
To reduce the computational cost of the uncertainty propagation analysis, which is used to study the impact of input parameter variations on the results of a simulation, a general and simple to apply methodology based on decomposing the solution to the model equations in terms of Chebyshev polynomials is discussed. This methodology, based on the work by Scheffel [Am. J. Comput. Math. 2, 173-193 (2012)], approximates the model equation solution with a semi-analytic expression that depends explicitly on time, spatial coordinates, and input parameters. By employing a weighted residual method, a set of nonlinear algebraic equations for the coefficients appearing in the Chebyshev decomposition is then obtained. The methodology is applied to a two-dimensional Braginskii model used to simulate plasma turbulence in basic plasma physics experiments and in the scrape-off layer of tokamaks, in order to study the impact on the simulation results of the input parameter that describes the parallel losses. The uncertainty that characterizes the time-averaged density gradient lengths, time-averaged densities, and fluctuation density level are evaluated. A reasonable estimate of the uncertainty of these distributions can be obtained with a single reduced-cost simulation.
Matsumoto, Takuma; Shibata, Kazunari
We have performed MHD simulations of Alfven wave propagation along an open ux tube in the solar atmosphere. In our numerical model, Alfven waves are generated by the photospheric granular motion. As the wave generator, we used a derived temporal spectrum of the photo-spheric granular motion from G-band movies of Hinode/SOT. It is shown that the total energy ux at the corona becomes larger and the transition region height becomes higher in the case when we use the observed spectrum rather than white/pink noise spectrum as the wave gener-ator. This difference can be explained by the Alfven wave resonance between the photosphere and the transition region. After performing Fourier analysis on our numerical results, we have found that the region between the photosphere and the transition region becomes an Alfven wave resonant cavity. We have conrmed that there are at least three resonant frequencies, 1, 3 and 5 mHz, in our numerical model. Alfven wave resonance is one of the most effective mechanisms to explain the dynamics of the spicules and the sufficient energy ux to heat the corona.
An improved affine projection algorithm for active noise cancellation
Zhang, Congyan; Wang, Mingjiang; Han, Yufei; Sun, Yunzhuo
2017-08-01
Affine projection algorithm is a signal reuse algorithm, and it has a good convergence rate compared to other traditional adaptive filtering algorithm. There are two factors that affect the performance of the algorithm, which are step factor and the projection length. In the paper, we propose a new variable step size affine projection algorithm (VSS-APA). It dynamically changes the step size according to certain rules, so that it can get smaller steady-state error and faster convergence speed. Simulation results can prove that its performance is superior to the traditional affine projection algorithm and in the active noise control (ANC) applications, the new algorithm can get very good results.
Topology optimization of wave-propagation problems
DEFF Research Database (Denmark)
Jensen, Jakob Søndergaard; Sigmund, Ole
2006-01-01
Topology optimization is demonstrated as a useful tool for systematic design of wave-propagation problems. We illustrate the applicability of the method for optical, acoustic and elastic devices and structures.......Topology optimization is demonstrated as a useful tool for systematic design of wave-propagation problems. We illustrate the applicability of the method for optical, acoustic and elastic devices and structures....
2015-12-23
Molecular Recognition Element For Use in Sensor Applications Report Title The overall goal of the project was to evolve a highly thermostable enzyme ( alcohol ...SECURITY CLASSIFICATION OF: The overall goal of the project was to evolve a highly thermostable enzyme ( alcohol dehydrogenase D (AdhD) from Pyrococcus...furiosus) to bind an explosive molecule, RDX. The enzyme naturally catalyzes the nicotinamide cofactor-dependent oxidation or reduction of alcohols
Radio wave propagation and parabolic equation modeling
Apaydin, Gokhan
2018-01-01
A thorough understanding of electromagnetic wave propagation is fundamental to the development of sophisticated communication and detection technologies. The powerful numerical methods described in this book represent a major step forward in our ability to accurately model electromagnetic wave propagation in order to establish and maintain reliable communication links, to detect targets in radar systems, and to maintain robust mobile phone and broadcasting networks. The first new book on guided wave propagation modeling and simulation to appear in nearly two decades, Radio Wave Propagation and Parabolic Equation Modeling addresses the fundamentals of electromagnetic wave propagation generally, with a specific focus on radio wave propagation through various media. The authors explore an array of new applications, and detail various v rtual electromagnetic tools for solving several frequent electromagnetic propagation problems. All of the methods described are presented within the context of real-world scenari...
The Structure of Affine Buildings
Weiss, Richard M
2009-01-01
In The Structure of Affine Buildings, Richard Weiss gives a detailed presentation of the complete proof of the classification of Bruhat-Tits buildings first completed by Jacques Tits in 1986. The book includes numerous results about automorphisms, completions, and residues of these buildings. It also includes tables correlating the results in the locally finite case with the results of Tits's classification of absolutely simple algebraic groups defined over a local field. A companion to Weiss's The Structure of Spherical Buildings, The Structure of Affine Buildings is organized around the clas
International Nuclear Information System (INIS)
Shin, Yong Woo; Kim, Min Soo; Lee, Sang Kwon
2010-01-01
For the detection of the impact location in a pipeline system, the correlation method has been the conventional method. For the application of the correlation method, the diameter of a duct should be small so that the acoustic wave inside the duct can propagate with nondispersive characteristics, in the form of, for example, a plane wave. This correlation method calculates the cross-correlation between acoustic waves measured at two acceleration sensors attached to a buried duct. It also gives information about the arrival time delay of an acoustic wave between two sensors. These arrival time delays are used for the estimation of the impact location. However, when the diameter of the duct is large, the acoustic waves inside the duct propagate with dispersive characteristics owing to the reflection of the acoustic wave off of the wall of the duct. This dispersive characteristic is related to the acoustic modes inside a duct. Therefore, the correlation method does not work correctly for the detection of the impact location. This paper proposes new methods of accurately measuring the arrival time delay between two sensors attached to duct line system. This method is based on the time-frequency analyses of the short time Fourier transform (STFT) and continuous wavelet transform (CWT). These methods can discriminate direct waves (non-dispersive waves) and reflective waves (dispersive waves) from the measured wave signals through the time-frequency analysis. The direct wave or the reflective wave is used to estimate the arrival time delay. This delay is used for the identification of the impact location. This systematic method can predict the impact location due to the impact forces of construction equipment with more accuracy than the correlation method
Semiclassical propagation of Wigner functions.
Dittrich, T; Gómez, E A; Pachón, L A
2010-06-07
We present a comprehensive study of semiclassical phase-space propagation in the Wigner representation, emphasizing numerical applications, in particular as an initial-value representation. Two semiclassical approximation schemes are discussed. The propagator of the Wigner function based on van Vleck's approximation replaces the Liouville propagator by a quantum spot with an oscillatory pattern reflecting the interference between pairs of classical trajectories. Employing phase-space path integration instead, caustics in the quantum spot are resolved in terms of Airy functions. We apply both to two benchmark models of nonlinear molecular potentials, the Morse oscillator and the quartic double well, to test them in standard tasks such as computing autocorrelation functions and propagating coherent states. The performance of semiclassical Wigner propagation is very good even in the presence of marked quantum effects, e.g., in coherent tunneling and in propagating Schrodinger cat states, and of classical chaos in four-dimensional phase space. We suggest options for an effective numerical implementation of our method and for integrating it in Monte-Carlo-Metropolis algorithms suitable for high-dimensional systems.
Energy Technology Data Exchange (ETDEWEB)
Franca, Demartonne R. [Brasilia Univ., DF (Brazil). Dept. de Engenharia Eletrica; Cheng-Kuei Jen; Yuu Ono [National Research Council (NRC), Quebec (Canada). Industrial Materials Institute
2005-07-01
Ultrasonic techniques are attractive for process monitoring and control because they are non-intrusive, robust and inexpensive. Two common concerns limiting the high temperature performance of conventional ultrasonic systems for flow measurement are related to transducers and couplants. A suitable approach to overcoming this drawback is to insert a thermal isolating buffer rod with good ultrasonic performance (e.g., high signal-to-noise ratio). This requirement is important because, a priori, the noises generated in the buffer rod may bury the desired signals, so that no meaningful information is extracted. Besides protecting the ultrasonic transducers from overheating in applications such as high temperature flow measurements, buffer rods are also a solution for the couplant between the probe and tested sample, since their probing end can be directly wetted by fluids. Here, we propose clad buffer rods driven by shear transducers as the main building block of contra propagating ultrasonic flowmeters for high temperature application. It is demonstrated that the superior signal-to-noise ratio exhibit by clad buffer rods compared to the reported non-clad counterparts improve precision in transit-time measurement, leading to more accurate flow speed determination. In addition, it is shown that clad buffer rods generate specific ultrasonic signals for temperature calibration of flowmeters, allowing temperature variation while still measuring accurately the flow speed. These results are of interest for the oil and gas industries. (author)
Propagation of dynamic measurement uncertainty
International Nuclear Information System (INIS)
Hessling, J P
2011-01-01
The time-dependent measurement uncertainty has been evaluated in a number of recent publications, starting from a known uncertain dynamic model. This could be defined as the 'downward' propagation of uncertainty from the model to the targeted measurement. The propagation of uncertainty 'upward' from the calibration experiment to a dynamic model traditionally belongs to system identification. The use of different representations (time, frequency, etc) is ubiquitous in dynamic measurement analyses. An expression of uncertainty in dynamic measurements is formulated for the first time in this paper independent of representation, joining upward as well as downward propagation. For applications in metrology, the high quality of the characterization may be prohibitive for any reasonably large and robust model to pass the whiteness test. This test is therefore relaxed by not directly requiring small systematic model errors in comparison to the randomness of the characterization. Instead, the systematic error of the dynamic model is propagated to the uncertainty of the measurand, analogously but differently to how stochastic contributions are propagated. The pass criterion of the model is thereby transferred from the identification to acceptance of the total accumulated uncertainty of the measurand. This increases the relevance of the test of the model as it relates to its final use rather than the quality of the calibration. The propagation of uncertainty hence includes the propagation of systematic model errors. For illustration, the 'upward' propagation of uncertainty is applied to determine if an appliance box is damaged in an earthquake experiment. In this case, relaxation of the whiteness test was required to reach a conclusive result
Smooth surfaces from bilinear patches: Discrete affine minimal surfaces
Käferböck, Florian
2013-06-01
Motivated by applications in freeform architecture, we study surfaces which are composed of smoothly joined bilinear patches. These surfaces turn out to be discrete versions of negatively curved affine minimal surfaces and share many properties with their classical smooth counterparts. We present computational design approaches and study special cases which should be interesting for the architectural application. 2013 Elsevier B.V.
Energy Technology Data Exchange (ETDEWEB)
Aihara, S.; Tsuchida, Y. [Nippon Steel Corp., Tokyo (Japan); Machida, S.; Yoshinari, H. [The University of Tokyo, Tokyo (Japan). Faculty of Engineering
1996-12-31
A proposal was made previously on a model of brittle crack propagation and arrest that considers the effect of crack opening suppression by using unbroken ligaments generated on steel plate surface and the effect that cracks precede in the central part of the plate thickness, based on a local limit stress theory for brittleness fracture. This paper discusses applicability of this model to a mixed type test, and elucidates causes for difference in the arrest tenacity of both types in a double tensile test of the standard size. The brittle crack propagation and arrest model based on the local limit stress theory was found applicable to a simulation of the mixed type test. Experimental crack propagation speed history and behavior of the arrest were reproduced nearly completely by using this model. When load stress is increased, the arrests in the mixed type test may be classified into arrests of both inside the steel plate and near the surface, cracks in the former position or arrest in the latter position, and rush of cracks into both positions. Furthermore, at higher stresses, the propagation speed drops once after cracks rushed into the test plate, but turns to a rise, leading to propagation and piercing. 8 refs., 15 figs., 3 tabs.
Energy Technology Data Exchange (ETDEWEB)
Aihara, S; Tsuchida, Y [Nippon Steel Corp., Tokyo (Japan); Machida, S; Yoshinari, H [The University of Tokyo, Tokyo (Japan). Faculty of Engineering
1997-12-31
A proposal was made previously on a model of brittle crack propagation and arrest that considers the effect of crack opening suppression by using unbroken ligaments generated on steel plate surface and the effect that cracks precede in the central part of the plate thickness, based on a local limit stress theory for brittleness fracture. This paper discusses applicability of this model to a mixed type test, and elucidates causes for difference in the arrest tenacity of both types in a double tensile test of the standard size. The brittle crack propagation and arrest model based on the local limit stress theory was found applicable to a simulation of the mixed type test. Experimental crack propagation speed history and behavior of the arrest were reproduced nearly completely by using this model. When load stress is increased, the arrests in the mixed type test may be classified into arrests of both inside the steel plate and near the surface, cracks in the former position or arrest in the latter position, and rush of cracks into both positions. Furthermore, at higher stresses, the propagation speed drops once after cracks rushed into the test plate, but turns to a rise, leading to propagation and piercing. 8 refs., 15 figs., 3 tabs.
Affinity biosensors: techniques and protocols
National Research Council Canada - National Science Library
Rogers, Kim R; Mulchandani, Ashok
1998-01-01
..., and government to begin or expand their biosensors research. This volume, Methods in Biotechnology vol. 7: Affinity Biosensors: Techniques and Protocols, describes a variety of classical and emerging transduction technologies that have been interfaced to bioaffinity elements (e.g., antibodies and receptors). Some of the reas...
Keller, Max; Kuhn, Kilian K; Einsiedel, Jürgen; Hübner, Harald; Biselli, Sabrina; Mollereau, Catherine; Wifling, David; Svobodová, Jaroslava; Bernhardt, Günther; Cabrele, Chiara; Vanderheyden, Patrick M L; Gmeiner, Peter; Buschauer, Armin
2016-03-10
Derivatization of biologically active peptides by conjugation with fluorophores or radionuclide-bearing moieties is an effective and commonly used approach to prepare molecular tools and diagnostic agents. Whereas lysine, cysteine, and N-terminal amino acids have been mostly used for peptide conjugation, we describe a new, widely applicable approach to peptide conjugation based on the nonclassical bioisosteric replacement of the guanidine group in arginine by a functionalized carbamoylguanidine moiety. Four arginine-containing peptide receptor ligands (angiotensin II, neurotensin(8-13), an analogue of the C-terminal pentapeptide of neuropeptide Y, and a neuropeptide FF analogue) were subject of this proof-of-concept study. The N(ω)-carbamoylated arginines, bearing spacers with a terminal amino group, were incorporated into the peptides by standard Fmoc solid phase peptide synthesis. The synthesized chemically stable peptide derivatives showed high receptor affinities with Ki values in the low nanomolar range, even when bulky fluorophores had been attached. Two new tritiated tracers for angiotensin and neurotensin receptors are described.
Einstein’s gravity from a polynomial affine model
Castillo-Felisola, Oscar; Skirzewski, Aureliano
2018-03-01
We show that the effective field equations for a recently formulated polynomial affine model of gravity, in the sector of a torsion-free connection, accept general Einstein manifolds—with or without cosmological constant—as solutions. Moreover, the effective field equations are partially those obtained from a gravitational Yang–Mills theory known as Stephenson–Kilmister–Yang theory. Additionally, we find a generalization of a minimally coupled massless scalar field in General Relativity within a ‘minimally’ coupled scalar field in this affine model. Finally, we present a brief (perturbative) analysis of the propagators of the gravitational theory, and count the degrees of freedom. For completeness, we prove that a Birkhoff-like theorem is valid for the analyzed sector.
Wave propagation in electromagnetic media
International Nuclear Information System (INIS)
Davis, J.L.
1990-01-01
This book is concerned with wave propagation in reacting media, specifically in electromagnetic materials. An account is presented of the mathematical methods of wave phenomena in electromagnetic materials. The author presents the theory of time-varying electromagnetic fields, which involves a discussion of Faraday's laws, Maxwell's equations and their application to electromagnetic wave propagation under a variety of conditions. The author gives a discussion of magnetohydrodynamics and plasma physics. Chapters are included on quantum mechanics and the theory of relativity. The mathematical foundation of electromagnetic waves vis a vis partial differential equations is discussed
Propagation testing multi-cell batteries.
Energy Technology Data Exchange (ETDEWEB)
Orendorff, Christopher J. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Lamb, Joshua [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Steele, Leigh Anna Marie [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Spangler, Scott Wilmer [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
2014-10-01
Propagation of single point or single cell failures in multi-cell batteries is a significant concern as batteries increase in scale for a variety of civilian and military applications. This report describes the procedure for testing failure propagation along with some representative test results to highlight the potential outcomes for different battery types and designs.
Vegetative Propagation and the Genetic Improvement of North American Hardwoods
R. E. Farmer
1973-01-01
Progress and problems in vegetative propagation of important North American hardwoods are reviewed with emphasis on rooting cuttings and the application of propagation techniques in breeding research. Some problems in rooting physiology are discussed.
Satake diagrams of affine Kac-Moody algebras
Energy Technology Data Exchange (ETDEWEB)
Tripathy, L K [S B R Government Womens' College, Berhampur, Orissa 760 001 (India); Pati, K C [Department of Physics, Khallikote College, Berhampur, Orissa 760 001 (India)
2006-02-10
Satake diagrams of affine Kac-Moody algebras (untwisted and twisted) are obtained from their Dynkin diagrams. These diagrams give a classification of restricted root systems associated with these algebras. In the case of simple Lie algebras, these root systems and Satake diagrams correspond to symmetric spaces which have recently found many physical applications in quantum integrable systems, quantum transport problems, random matrix theories etc. We hope these types of root systems may have similar applications in theoretical physics in future and may correspond to symmetric spaces analogue of affine Kac-Moody algebras if they exist.
The affine quantum gravity programme
Klauder, J R
2002-01-01
The central principle of affine quantum gravity is securing and maintaining the strict positivity of the matrix left brace g-hat sub a sub b (x)right brace composed of the spatial components of the local metric operator. On spectral grounds, canonical commutation relations are incompatible with this principle, and they must be replaced by noncanonical, affine commutation relations. Due to the partial second-class nature of the quantum gravitational constraints, it is advantageous to use the recently developed projection operator method, which treats all quantum constraints on an equal footing. Using this method, enforcement of regularized versions of the gravitational operator constraints is formulated quite naturally by means of a novel and relatively well-defined functional integral involving only the same set of variables that appears in the usual classical formulation. It is anticipated that skills and insight to study this formulation can be developed by studying special, reduced-variable models that sti...
Eigenwave spectrum of surface acoustic waves on a rough self-affine fractal surface
Palasantzas, George
1994-01-01
The propagation of a sound wave along a statistically rough solid-vacuum interface is investigated for the case of self-affine fractals. The wave-number relation ω=ω(k) is examined for the transverse polarized surface wave. The range of existence of this wave is analyzed as a function of the degree
Affine invariants of convex polygons.
Flusser, Jan
2002-01-01
In this correspondence, we prove that the affine invariants, for image registration and object recognition, proposed recently by Yang and Cohen (see ibid., vol.8, no.7, p.934-46, July 1999) are algebraically dependent. We show how to select an independent and complete set of the invariants. The use of this new set leads to a significant reduction of the computing complexity without decreasing the discrimination power.
,
2013-01-01
This U.S. Geological Survey (USGS) Open-File report presents a compilation of tsunami modeling studies for the Science Application for Risk Reduction (SAFRR) tsunami scenario. These modeling studies are based on an earthquake source specified by the SAFRR tsunami source working group (Kirby and others, 2013). The modeling studies in this report are organized into three groups. The first group relates to tsunami generation. The effects that source discretization and horizontal displacement have on tsunami initial conditions are examined in section 1 (Whitmore and others). In section 2 (Ryan and others), dynamic earthquake rupture models are explored in modeling tsunami generation. These models calculate slip distribution and vertical displacement of the seafloor as a result of realistic fault friction, physical properties of rocks surrounding the fault, and dynamic stresses resolved on the fault. The second group of papers relates to tsunami propagation and inundation modeling. Section 3 (Thio) presents a modeling study for the entire California coast that includes runup and inundation modeling where there is significant exposure and estimates of maximum velocity and momentum flux at the shoreline. In section 4 (Borrero and others), modeling of tsunami propagation and high-resolution inundation of critical locations in southern California is performed using the National Oceanic and Atmospheric Administration’s (NOAA) Method of Splitting Tsunami (MOST) model and NOAA’s Community Model Interface for Tsunamis (ComMIT) modeling tool. Adjustments to the inundation line owing to fine-scale structures such as levees are described in section 5 (Wilson). The third group of papers relates to modeling of hydrodynamics in ports and harbors. Section 6 (Nicolsky and Suleimani) presents results of the model used at the Alaska Earthquake Information Center for the Ports of Los Angeles and Long Beach, as well as synthetic time series of the modeled tsunami for other selected
Rank Two Affine Manifolds in Genus 3
Aulicino, David; Nguyen, Duc-Manh
2016-01-01
We complete the classification of rank two affine manifolds in the moduli space of translation surfaces in genus three. Combined with a recent result of Mirzakhani and Wright, this completes the classification of higher rank affine manifolds in genus three.
Alternative affinity tools: more attractive than antibodies?
Ruigrok, V.J.B.; Levisson, M.; Eppink, M.H.M.; Smidt, H.; Oost, van der J.
2011-01-01
Antibodies are the most successful affinity tools used today, in both fundamental and applied research (diagnostics, purification and therapeutics). Nonetheless, antibodies do have their limitations, including high production costs and low stability. Alternative affinity tools based on nucleic acids
Spectral affinity in protein networks.
Voevodski, Konstantin; Teng, Shang-Hua; Xia, Yu
2009-11-29
Protein-protein interaction (PPI) networks enable us to better understand the functional organization of the proteome. We can learn a lot about a particular protein by querying its neighborhood in a PPI network to find proteins with similar function. A spectral approach that considers random walks between nodes of interest is particularly useful in evaluating closeness in PPI networks. Spectral measures of closeness are more robust to noise in the data and are more precise than simpler methods based on edge density and shortest path length. We develop a novel affinity measure for pairs of proteins in PPI networks, which uses personalized PageRank, a random walk based method used in context-sensitive search on the Web. Our measure of closeness, which we call PageRank Affinity, is proportional to the number of times the smaller-degree protein is visited in a random walk that restarts at the larger-degree protein. PageRank considers paths of all lengths in a network, therefore PageRank Affinity is a precise measure that is robust to noise in the data. PageRank Affinity is also provably related to cluster co-membership, making it a meaningful measure. In our experiments on protein networks we find that our measure is better at predicting co-complex membership and finding functionally related proteins than other commonly used measures of closeness. Moreover, our experiments indicate that PageRank Affinity is very resilient to noise in the network. In addition, based on our method we build a tool that quickly finds nodes closest to a queried protein in any protein network, and easily scales to much larger biological networks. We define a meaningful way to assess the closeness of two proteins in a PPI network, and show that our closeness measure is more biologically significant than other commonly used methods. We also develop a tool, accessible at http://xialab.bu.edu/resources/pnns, that allows the user to quickly find nodes closest to a queried vertex in any protein
Spectral affinity in protein networks
Directory of Open Access Journals (Sweden)
Teng Shang-Hua
2009-11-01
Full Text Available Abstract Background Protein-protein interaction (PPI networks enable us to better understand the functional organization of the proteome. We can learn a lot about a particular protein by querying its neighborhood in a PPI network to find proteins with similar function. A spectral approach that considers random walks between nodes of interest is particularly useful in evaluating closeness in PPI networks. Spectral measures of closeness are more robust to noise in the data and are more precise than simpler methods based on edge density and shortest path length. Results We develop a novel affinity measure for pairs of proteins in PPI networks, which uses personalized PageRank, a random walk based method used in context-sensitive search on the Web. Our measure of closeness, which we call PageRank Affinity, is proportional to the number of times the smaller-degree protein is visited in a random walk that restarts at the larger-degree protein. PageRank considers paths of all lengths in a network, therefore PageRank Affinity is a precise measure that is robust to noise in the data. PageRank Affinity is also provably related to cluster co-membership, making it a meaningful measure. In our experiments on protein networks we find that our measure is better at predicting co-complex membership and finding functionally related proteins than other commonly used measures of closeness. Moreover, our experiments indicate that PageRank Affinity is very resilient to noise in the network. In addition, based on our method we build a tool that quickly finds nodes closest to a queried protein in any protein network, and easily scales to much larger biological networks. Conclusion We define a meaningful way to assess the closeness of two proteins in a PPI network, and show that our closeness measure is more biologically significant than other commonly used methods. We also develop a tool, accessible at http://xialab.bu.edu/resources/pnns, that allows the user to
Casse, C.; Gosset, M.; Peugeot, C.; Boone, A.; Pedinotti, V.
2013-12-01
The use of satellite based rainfall in research or operational Hydrological application is becoming more and more frequent. This is specially true in the Tropics where ground based gauge (or radar) network are generally scarce and often degrading. Member of the GPM constellation, the new French-Indian satellite Mission Megha-Tropiques (MT) dedicated to the water and energy budget in the tropical atmosphere contributes to a better monitoring of rainfall in the inter-tropical zone. As part of this mission, research is developed on the use of MT rainfall products for hydrological research or operational application such as flood monitoring. A key issue for such applications is how to account for rainfall products biases and uncertainties, and how to propagate them in the end user models ? Another important question is how to choose the best space-time resolution for the rainfall forcing, given that both model performances and rain-product uncertainties are resolution dependent. This talk will present on going investigations and perspectives on this subject, with examples from the Megha_tropiques Ground validation sites in West Africa. The CNRM model Surfex-ISBA/TRIP has been set up to simulate the hydrological behavior of the Niger River. This modeling set up is being used to study the predictability of Niger Floods events in the city of Niamey and the performances of satellite rainfall products as forcing for such predictions. One of the interesting feature of the Niger outflow in Niamey is its double peak : a first peak attributed to 'local' rainfall falling in small to medium size basins situated in the region of Niamey, and a second peak linked to the rainfall falling in the upper par of the river, and slowly propagating through the river towards Niamey. The performances of rainfall products are found to differ between the wetter/upper part of the basin, and the local/sahelian areas. Both academic tests with artificially biased or 'perturbed' rainfield and actual
Wang, Weidong; Leng, Gangsong
2007-11-01
According to the three notions of mixed affine surface area, Lp-affine surface area and Lp-mixed affine surface area proposed by Lutwak, in this article, we give the concept of ith Lp-mixed affine surface area such that the first and second notions of Lutwak are its special cases. Further, some Lutwak's results are extended associated with this concept. Besides, applying this concept, we establish an inequality for the volumes and dual quermassintegrals of a class of star bodies.
Propagation of SLF/ELF electromagnetic waves
Pan, Weiyan
2014-01-01
This book deals with the SLF/ELF wave propagation, an important branch of electromagnetic theory. The SLF/ELF wave propagation theory is well applied in earthquake electromagnetic radiation, submarine communication, thunderstorm detection, and geophysical prospecting and diagnostics. The propagation of SLF/ELF electromagnetic waves is introduced in various media like the earth-ionospheric waveguide, ionospheric plasma, sea water, earth, and the boundary between two different media or the stratified media. Applications in the earthquake electromagnetic radiation and the submarine communications are also addressed. This book is intended for scientists and engineers in the fields of radio propagation and EM theory and applications. Prof. Pan is a professor at China Research Institute of Radiowave Propagation in Qingdao (China). Dr. Li is a professor at Zhejiang University in Hangzhou (China).
Manifolds with integrable affine shape operator
Directory of Open Access Journals (Sweden)
Daniel A. Joaquín
2005-05-01
Full Text Available This work establishes the conditions for the existence of vector fields with the property that theirs covariant derivative, with respect to the affine normal connection, be the affine shape operatorS in hypersurfaces. Some results are obtained from this property and, in particular, for some kind of affine decomposable hypersurfaces we explicitely get the actual vector fields.
Affinity Spaces and 21st Century Learning
Gee, James Paul
2017-01-01
This article discusses video games as "attractors" to "affinity spaces." It argues that affinity spaces are key sites today where people teach and learn 21st Century skills. While affinity spaces are proliferating on the Internet as interest-and-passion-driven sites devoted to a common set of endeavors, they are not new, just…
Using Affinity Diagrams to Evaluate Interactive Prototypes
DEFF Research Database (Denmark)
Lucero, Andrés
2015-01-01
our particular use of affinity diagramming in prototype evaluations. We reflect on a decade’s experience using affinity diagramming across a number of projects, both in industry and academia. Our affinity diagramming process in interaction design has been tailored and consists of four stages: creating...
Constrained bidirectional propagation and stroke segmentation
Energy Technology Data Exchange (ETDEWEB)
Mori, S; Gillespie, W; Suen, C Y
1983-03-01
A new method for decomposing a complex figure into its constituent strokes is described. This method, based on constrained bidirectional propagation, is suitable for parallel processing. Examples of its application to the segmentation of Chinese characters are presented. 9 references.
Gravitational Goldstone fields from affine gauge theory
Tresguerres, Romualdo; Mielke, Eckehard W.
2000-08-01
In order to facilitate the application of standard renormalization techniques, gravitation should be described, in the pure connection formalism, as a Yang-Mills theory of a certain spacetime group, say the Poincaré or the affine group. This embodies the translational as well as the linear connection. However, the coframe is not the standard Yang-Mills-type gauge field of the translations, since it lacks the inhomogeneous gradient term in the gauge transformations. By explicitly restoring this ``hidden'' piece within the framework of nonlinear realizations, the usual geometrical interpretation of the dynamical theory becomes possible, and in addition one can avoid the metric or coframe degeneracy which would otherwise interfere with the integrations within the path integral. We claim that nonlinear realizations provide the general mathematical scheme for the foundation of gauge theories of spacetime symmetries. When applied to construct the Yang-Mills theory of the affine group, tetrads become identified with nonlinear translational connections; the anholonomic metric no longer constitutes an independent gravitational potential, since its degrees of freedom reveal a correspondence to eliminateable Goldstone bosons. This may be an important advantage for quantization.
ACTS Propagation Measurements in Maryland and Virginia
Dissanayake, Asoka; Lin, Kuan-Ting
1996-01-01
Rapid growth in new satellite services incorporating very small aperture terminals (VSAT) and ultra small aperture terminals (USAT) is expected in the coming years. Small size terminals allow for widespread use of satellite services in small business and domestic applications. Due to congestion of lower frequency bands such as C and Ku, most of these services will use Ka-band (2/20 GHz) frequencies. Propagation impairments produced by the troposphere is a limiting factor for the effective use of the 20/30 GHz band and the use of smaller Earth terminals makes it difficult to provide sufficient link margins for propagation related outages. In this context, reliable prediction of propagation impairments for low margin systems becomes important. Due to the complexity of propagation phenomena propagation modeling is mainly attempted on an empirical basis. As such, the availability of reliable measured data that extend to probability levels well in excess of the traditional limit of 1 percent is of great importance in the development, validation, and refinement of propagation models. The beacon payload on the Advanced Communications Technology Satellite (ACTS) together with the propagation measurement terminals developed under the NASA ACTS propagation program provide an excellent opportunity to collect such data on a long-term basis. This paper presents the results of ACTS propagation measurements conducted in the Washington, DC metropolitan area by COMSAT Laboratories.
The affine quantum gravity programme
International Nuclear Information System (INIS)
Klauder, John R
2002-01-01
The central principle of affine quantum gravity is securing and maintaining the strict positivity of the matrix { g-hat ab (x)} composed of the spatial components of the local metric operator. On spectral grounds, canonical commutation relations are incompatible with this principle, and they must be replaced by noncanonical, affine commutation relations. Due to the partial second-class nature of the quantum gravitational constraints, it is advantageous to use the recently developed projection operator method, which treats all quantum constraints on an equal footing. Using this method, enforcement of regularized versions of the gravitational operator constraints is formulated quite naturally by means of a novel and relatively well-defined functional integral involving only the same set of variables that appears in the usual classical formulation. It is anticipated that skills and insight to study this formulation can be developed by studying special, reduced-variable models that still retain some basic characteristics of gravity, specifically a partial second-class constraint operator structure. Although perturbatively nonrenormalizable, gravity may possibly be understood nonperturbatively from a hard-core perspective that has proved valuable for specialized models. Finally, developing a procedure to pass to the genuine physical Hilbert space involves several interconnected steps that require careful coordination
International Nuclear Information System (INIS)
Murphy, G.L.
1975-01-01
The general topic of geometric unified field theories is discussed in the first section. Some reasons are given for pursuing such theories, and some criticisms are considered. The second section develops the fundamental equations of a purely affine theory which is invariant under projective transformations of the affine connection. This theory is a generalization of that of Schrodinger. Possible identifications for the space-time metric are considered in Sec. III. Sections IV and V deal with the limits of pure gravitation and electrodynamics. In the symmetric limit, Einstein's vacuum equations with cosmological term are recovered. The theory also contains a generalized electrodynamic set of equations which is very similar to the Born-Infeld set. In the weak-field approximation, a finite mass must be attributed to the photon. The problem of motion for charges is discussed here, and it is argued that criticisms of unified field theories because of a supposed inability to produce the Lorentz force law are probably not justified. Three more speculative sections deal with possible explanations of nuclear forces, the spin-torsion relation, and particle structure
Golshan, Nassar (Editor)
1996-01-01
The NASA Propagation Experimenters (NAPEX) Meeting and associated Advanced Communications Technology Satellite (ACTS) Propagation Studies Miniworkshop convene yearly to discuss studies supported by the NASA Propagation Program. Representatives from the satellite communications (satcom)industry, academia, and government with an interest in space-ground radio wave propagation have peer discussion of work in progress, disseminate propagation results, and interact with the satcom industry. NAPEX XX, in Fairbanks, Alaska, June 4-5, 1996, had three sessions: (1) "ACTS Propagation Study: Background, Objectives, and Outcomes," covered results from thirteen station-years of Ka-band experiments; (2) "Propagation Studies for Mobile and Personal Satellite Applications," provided the latest developments in measurement, modeling, and dissemination of propagation phenomena of interest to the mobile, personal, and aeronautical satcom industry; and (3)"Propagation Research Topics," covered a range of topics including space/ground optical propagation experiments, propagation databases, the NASA Propagation Web Site, and revision plans for the NASA propagation effects handbooks. The ACTS Miniworkshop, June 6, 1996, covered ACTS status, engineering support for ACTS propagation terminals, and the ACTS Propagation Data Center. A plenary session made specific recommendations for the future direction of the program.
Li, Ming
material expressed by electric field dependent dielectric constant. Next, the concepts of spectrum interpolation (Chapter 3), higher-order incident (Chapter 4) and perfectly matched layer (Chapter 5) are introduced and applied to TMM, with detailed simulation for 1D, 2D, and 3D photonic crystal examples. Curvilinear coordinate transform is applied to the Maxwell's Equations to study waveguide bend (Chapter 6). By finding the phase difference along propagation direction at various XY plane locations, the behaviors of electromagnetic wave propagation (such as light bending, focusing etc) can be studied (Chapter 7), which can be applied to diffractive optics for new devices design. Numerical simulation tools for lasing devices are usually based on rate equations which are not accurate above the threshold and for small scale lasing cavities (such as nano-scale cavities). Recently, we extend the TMM package function to include the capacity of dealing active gain materials. Both lasing (above threshold) and spontaneous emission (below threshold) can be studied in the frame work of our Gain-TMM algorithm. Chapter 8 will illustrate the algorithm in detail and show the simulation results for 3D photonic crystal lasing devices. Then, microwave experiments (mainly resonant cavity embedded at layer-by-layer woodpile structures) are performed at Chapter 9 as an efficient practical way to study photonic crystal devices. The size of photonic crystal under microwave region is at the order of centimeter which makes the fabrication easier to realize. At the same time due to the scaling property, the result of microwave experiments can be applied directly to optical or infrared frequency regions. The systematic TMM simulations for various resonant cavities are performed and consistent results are obtained when compared with microwave experiments. Besides scaling the experimental results to much smaller wavelength, designing potential photonic crystal devices for application at microwave is
Enhancing Community Detection By Affinity-based Edge Weighting Scheme
Energy Technology Data Exchange (ETDEWEB)
Yoo, Andy [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Sanders, Geoffrey [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Henson, Van [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Vassilevski, Panayot [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
2015-10-05
Community detection refers to an important graph analytics problem of finding a set of densely-connected subgraphs in a graph and has gained a great deal of interest recently. The performance of current community detection algorithms is limited by an inherent constraint of unweighted graphs that offer very little information on their internal community structures. In this paper, we propose a new scheme to address this issue that weights the edges in a given graph based on recently proposed vertex affinity. The vertex affinity quantifies the proximity between two vertices in terms of their clustering strength, and therefore, it is ideal for graph analytics applications such as community detection. We also demonstrate that the affinity-based edge weighting scheme can improve the performance of community detection algorithms significantly.
International Nuclear Information System (INIS)
Cash, R.J.
1995-01-01
To assure the continued absence of uncontrolled condensed-phase chemical reactions in connection with the Hanford waste materials, efforts have been underway including both theoretical and experimental investigations to clarify the requirements for such reactions. This document defines the differences and requirements for homogeneous runaway and propagating chemical reactions incuding a discussion of general contact-temperature ignition (CTI) condition for propagating reactions that include the effect of moisture. The CTI condition implies that the contact temperature or interface temperature between reacted and unreacted materials must exceed the ignition temperature and is compared to experimental data including both synthetic ferrocyanide and surrogate organic materials. In all cases, the occurrences of ignition accompanied by self-propagating reactions are consistent with the theoretical anticipations of the CTI condition
Lee, H. S.
2018-03-01
Corrosion fatigue crack propagation test was conducted of giga-grade steel and its heat affected zone in pH buffer solutions, and the results were compared with model predictions. Pure corrosion effect on fatigue crack propagation, particularly, in corrosive environment was evaluated by means of the modified Forman equation. As shown in results, the average corrosion rate determined from the ratio of pure corrosion induced crack length to entire crack length under a cycle load were 0.11 and 0.37 for base metal and heat affected zone, respectively, with load ratio of 0.5, frequency of 0.5 and pH 10.0 environment. These results demonstrate new interpretation methodology for corrosion fatigue crack propagation enabling the pure corrosion effects on the behavior to be determined.
Modelling the gluon propagator
Energy Technology Data Exchange (ETDEWEB)
Leinweber, D.B.; Parrinello, C.; Skullerud, J.I.; Williams, A.G
1999-03-01
Scaling of the Landau gauge gluon propagator calculated at {beta} = 6.0 and at {beta} = 6.2 is demonstrated. A variety of functional forms for the gluon propagator calculated on a large (32{sup 3} x 64) lattice at {beta} = 6.0 are investigated.
Salomons, E.; Polinder, H.; Lohman, W.; Zhou, H.; Borst, H.
2009-01-01
A new engineering model for sound propagation in cities is presented. The model is based on numerical and experimental studies of sound propagation between street canyons. Multiple reflections in the source canyon and the receiver canyon are taken into account in an efficient way, while weak
Antisymmetric tensor generalizations of affine vector fields.
Houri, Tsuyoshi; Morisawa, Yoshiyuki; Tomoda, Kentaro
2016-02-01
Tensor generalizations of affine vector fields called symmetric and antisymmetric affine tensor fields are discussed as symmetry of spacetimes. We review the properties of the symmetric ones, which have been studied in earlier works, and investigate the properties of the antisymmetric ones, which are the main theme in this paper. It is shown that antisymmetric affine tensor fields are closely related to one-lower-rank antisymmetric tensor fields which are parallelly transported along geodesics. It is also shown that the number of linear independent rank- p antisymmetric affine tensor fields in n -dimensions is bounded by ( n + 1)!/ p !( n - p )!. We also derive the integrability conditions for antisymmetric affine tensor fields. Using the integrability conditions, we discuss the existence of antisymmetric affine tensor fields on various spacetimes.
Affine LIBOR Models with Multiple Curves
DEFF Research Database (Denmark)
Grbac, Zorana; Papapantoleon, Antonis; Schoenmakers, John
2015-01-01
are specified following the methodology of the affine LIBOR models and are driven by the wide and flexible class of affine processes. The affine property is preserved under forward measures, which allows us to derive Fourier pricing formulas for caps, swaptions, and basis swaptions. A model specification...... with dependent LIBOR rates is developed that allows for an efficient and accurate calibration to a system of caplet prices....
Selection of imprinted nanoparticles by affinity chromatography.
Guerreiro, António R; Chianella, Iva; Piletska, Elena; Whitcombe, Michael J; Piletsky, Sergey A
2009-04-15
Soluble molecularly imprinted nanoparticles were synthesised via iniferter initiated polymerisation and separated by size via gel permeation chromatography. Subsequent fractionation of these particles by affinity chromatography allowed the separation of high affinity fractions from the mixture of nanoparticles. Fractions selected this way possess affinity similar to that of natural antibodies (K(d) 6.6x10(-8)) M and were also able to discriminate between related functional analogues of the template.
Network propagation in the cytoscape cyberinfrastructure.
Carlin, Daniel E; Demchak, Barry; Pratt, Dexter; Sage, Eric; Ideker, Trey
2017-10-01
Network propagation is an important and widely used algorithm in systems biology, with applications in protein function prediction, disease gene prioritization, and patient stratification. However, up to this point it has required significant expertise to run. Here we extend the popular network analysis program Cytoscape to perform network propagation as an integrated function. Such integration greatly increases the access to network propagation by putting it in the hands of biologists and linking it to the many other types of network analysis and visualization available through Cytoscape. We demonstrate the power and utility of the algorithm by identifying mutations conferring resistance to Vemurafenib.
Network propagation in the cytoscape cyberinfrastructure.
Directory of Open Access Journals (Sweden)
Daniel E Carlin
2017-10-01
Full Text Available Network propagation is an important and widely used algorithm in systems biology, with applications in protein function prediction, disease gene prioritization, and patient stratification. However, up to this point it has required significant expertise to run. Here we extend the popular network analysis program Cytoscape to perform network propagation as an integrated function. Such integration greatly increases the access to network propagation by putting it in the hands of biologists and linking it to the many other types of network analysis and visualization available through Cytoscape. We demonstrate the power and utility of the algorithm by identifying mutations conferring resistance to Vemurafenib.
Connections between quantized affine algebras and superalgebras
International Nuclear Information System (INIS)
Zhang, R.B.
1992-08-01
Every affine superalgebra with a symmetrizable Cartan matrix is closely related to an ordinary affine algebra with the same Cartan matrix. It is shown that the quantum supergroup associated with the former is essentially isomorphic to the quantum group associated with the latter in an appropriate class of representations. At the classical level, each integrable irreducible highest weight representation of the affine superalgebra has a corresponding irreducible representation of the affine algebra, which has the same weight space decomposition. (author). 5 refs, 3 tabs
Directory of Open Access Journals (Sweden)
Carlos Pons-Morera
2012-06-01
Full Text Available El uso de las técnicas de affinity diagram está cada día más en alza como método para discernir los puntos clave de una organización o los resortes que darán lugar a una mejora competitiva. El caso que nos ocupa es una primera aproximación a la identificación de qué servicios de los que ofrece la Universidad Politécnica de Valencia, podrían ser mejorados con el uso de nuevas tecnologías. (Affinity diagram techniques are used to discern the key points of an organization or key factors that will lead to an improvement in competitive advantages. In this paper we do a first approximation to identify which services offered by the Universidad Politécnica de Valencia could be improved with the use of new technologies.
Numerical simulation methods for wave propagation through optical waveguides
International Nuclear Information System (INIS)
Sharma, A.
1993-01-01
The simulation of the field propagation through waveguides requires numerical solutions of the Helmholtz equation. For this purpose a method based on the principle of orthogonal collocation was recently developed. The method is also applicable to nonlinear pulse propagation through optical fibers. Some of the salient features of this method and its application to both linear and nonlinear wave propagation through optical waveguides are discussed in this report. 51 refs, 8 figs, 2 tabs
International Nuclear Information System (INIS)
Pisani, F.
2000-02-01
In the fast igniter scheme, a recent approach proposed for the inertial confinement fusion, the idea is to dissociate the fuel ignition phase from its compression. The ignition phase would be then achieved by means of an external energy source: a fast electron beam generated by the interaction with an ultra-intense laser. The main goal of this work is to study the mechanisms of the hot electron energy transfer to the compressed fuel. We intent in particular to study the role of the electric and collisional effects involved in the hot electron propagation in a medium with properties similar to the compressed fuel. We carried out two experiments, one at the Vulcan laser facility (England) and the second one at the new LULI 100 TW laser (France). During the first experiment, we obtained the first results on the hot electron propagation in a dense and hot plasma. The innovating aspect of this work was in particular the use of the laser-shock technique to generate high pressures, allowing the strongly correlated and degenerated plasma to be created. The role of the electric and magnetic effects due to the space charge associated with the fast electron beam has been investigated in the second experiment. Here we studied the propagation in materials with different electrical characteristics: an insulator and a conductor. The analysis of the results showed that only by taking into account simultaneously the two propagation mechanisms (collisions and electric effects) a correct treatment of the energy deposition is possible. We also showed the importance of taking into account the induced modifications due to the electrons beam crossing the target, especially the induced heating. (author)
On affine non-negative matrix factorization
DEFF Research Database (Denmark)
Laurberg, Hans; Hansen, Lars Kai
2007-01-01
We generalize the non-negative matrix factorization (NMF) generative model to incorporate an explicit offset. Multiplicative estimation algorithms are provided for the resulting sparse affine NMF model. We show that the affine model has improved uniqueness properties and leads to more accurate id...
Global affine differential geometry of hypersurfaces
Li, An-Min; Zhao, Guosong; Hu, Zejun
2015-01-01
This book draws a colorful and widespread picture of global affine hypersurface theory up to the most recent state. Moreover, the recent development revealed that affine differential geometry- as differential geometry in general- has an exciting intersection area with other fields of interest, like partial differential equations, global analysis, convex geometry and Riemann surfaces.
Novel trends in affinity biosensors: current challenges and perspectives
International Nuclear Information System (INIS)
Arugula, Mary A; Simonian, Aleksandr
2014-01-01
Molecular biorecognition processes facilitate physical and biochemical interactions between molecules in all crucial metabolic pathways. Perhaps the target analyte and the biorecognition element interactions have the most impactful use in biosensing applications. Traditional analytical sensing systems offer excellent biorecognition elements with the ability to detect and determine the presence of analytes. High affinity antibodies and DNA play an important role in the development of affinity biosensors based on electrochemical, optical and mass sensitive approaches. Advancements in this area routinely employ labels, label free, nanoparticles, multifunctional matrices, carbon nanotubes and other methods to meet the requirements of its own application. However, despite increasing affinity ceilings for conventional biosensors, the field draws back in meeting specifically important demands, such as long-term stability, ultrasensitivity, rapid detection, extreme selectivity, strong biological base, calibration, in vivo measurements, regeneration, satisfactory performance and ease of production. Nevertheless, recent efforts through this line have produced novel high-tech nanosensing systems such as ‘aptamers’ and ‘phages’ which exhibit high-throughput sensing. Aptamers and phages are powerful tools that excel over antibodies in sensibility, stability, multi-detection, in vivo measurements and regeneration. Phages are superior in stability, screening for affinity-based target molecules ranging from small to proteins and even cells, and easy production. In this review, we focus mainly on recent developments in affinity-based biosensors such as immunosensors, DNA sensors, emphasizing aptasensors and phage-based biosensors basing on novel electrochemical, optical and mass sensitive detection techniques. We also address enzyme inhibition-based biosensors and the current problems associated with the above sensors and their future perspectives. (topical review)
International Nuclear Information System (INIS)
Ferrand, Adrien; Darmon, Michel; Chatillon, Sylvain; Deschamps, Marc
2014-01-01
The Time of Flight Diffraction (TOFD) technique is a classical ultrasonic method used in ultrasonic non-destructive evaluation, which allows a precise positioning and a quantitative size evaluation of cracks in the inspected material. Among the typical phenomena arising in the current TOFD inspection, the so-called 'head wave' is the first contribution reaching the receiver. The head wave propagation on a planar interface is well known and identified as a critical refraction taking place on the material surface. On irregular surfaces, it has been shown that the head wave results from the melting of surface and bulk waves mechanisms and that surface irregularities are responsible for numerous diffractions of the incident head wave. To simulate such behaviour, a model has been developed using a ray tracing technique based on time of flight minimization (generalized Fermat's principle). It enables the calculation of the ray path and the corresponding time of flight of all waves propagating in the material, including the head wave. To obtain a complete propagation model for these waves (both trajectory and amplitude), the integration of Geometrical Theory of Diffraction (GTD) models is currently performed by coupling them with the ray-based approach discussed above.
Ferrand, Adrien; Darmon, Michel; Chatillon, Sylvain; Deschamps, Marc
2014-04-01
The Time of Flight Diffraction (TOFD) technique is a classical ultrasonic method used in ultrasonic non-destructive evaluation, which allows a precise positioning and a quantitative size evaluation of cracks in the inspected material. Among the typical phenomena arising in the current TOFD inspection, the so-called "head wave" is the first contribution reaching the receiver. The head wave propagation on a planar interface is well known and identified as a critical refraction taking place on the material surface. On irregular surfaces, it has been shown that the head wave results from the melting of surface and bulk waves mechanisms and that surface irregularities are responsible for numerous diffractions of the incident head wave. To simulate such behaviour, a model has been developed using a ray tracing technique based on time of flight minimization (generalized Fermat's principle). It enables the calculation of the ray path and the corresponding time of flight of all waves propagating in the material, including the head wave. To obtain a complete propagation model for these waves (both trajectory and amplitude), the integration of Geometrical Theory of Diffraction (GTD) models is currently performed by coupling them with the ray-based approach discussed above.
Database for propagation models
Kantak, Anil V.
1991-07-01
A propagation researcher or a systems engineer who intends to use the results of a propagation experiment is generally faced with various database tasks such as the selection of the computer software, the hardware, and the writing of the programs to pass the data through the models of interest. This task is repeated every time a new experiment is conducted or the same experiment is carried out at a different location generating different data. Thus the users of this data have to spend a considerable portion of their time learning how to implement the computer hardware and the software towards the desired end. This situation may be facilitated considerably if an easily accessible propagation database is created that has all the accepted (standardized) propagation phenomena models approved by the propagation research community. Also, the handling of data will become easier for the user. Such a database construction can only stimulate the growth of the propagation research it if is available to all the researchers, so that the results of the experiment conducted by one researcher can be examined independently by another, without different hardware and software being used. The database may be made flexible so that the researchers need not be confined only to the contents of the database. Another way in which the database may help the researchers is by the fact that they will not have to document the software and hardware tools used in their research since the propagation research community will know the database already. The following sections show a possible database construction, as well as properties of the database for the propagation research.
Improving image segmentation by learning region affinities
Energy Technology Data Exchange (ETDEWEB)
Prasad, Lakshman [Los Alamos National Laboratory; Yang, Xingwei [TEMPLE UNIV.; Latecki, Longin J [TEMPLE UNIV.
2010-11-03
We utilize the context information of other regions in hierarchical image segmentation to learn new regions affinities. It is well known that a single choice of quantization of an image space is highly unlikely to be a common optimal quantization level for all categories. Each level of quantization has its own benefits. Therefore, we utilize the hierarchical information among different quantizations as well as spatial proximity of their regions. The proposed affinity learning takes into account higher order relations among image regions, both local and long range relations, making it robust to instabilities and errors of the original, pairwise region affinities. Once the learnt affinities are obtained, we use a standard image segmentation algorithm to get the final segmentation. Moreover, the learnt affinities can be naturally unutilized in interactive segmentation. Experimental results on Berkeley Segmentation Dataset and MSRC Object Recognition Dataset are comparable and in some aspects better than the state-of-art methods.
DNA motif elucidation using belief propagation
Wong, Ka-Chun; Chan, Tak-Ming; Peng, Chengbin; Li, Yue; Zhang, Zhaolei
2013-01-01
Protein-binding microarray (PBM) is a high-throughout platform that can measure the DNA-binding preference of a protein in a comprehensive and unbiased manner. A typical PBM experiment can measure binding signal intensities of a protein to all the possible DNA k-mers (k = 8 ?10); such comprehensive binding affinity data usually need to be reduced and represented as motif models before they can be further analyzed and applied. Since proteins can often bind to DNA in multiple modes, one of the major challenges is to decompose the comprehensive affinity data into multimodal motif representations. Here, we describe a new algorithm that uses Hidden Markov Models (HMMs) and can derive precise and multimodal motifs using belief propagations. We describe an HMM-based approach using belief propagations (kmerHMM), which accepts and preprocesses PBM probe raw data into median-binding intensities of individual k-mers. The k-mers are ranked and aligned for training an HMM as the underlying motif representation. Multiple motifs are then extracted from the HMM using belief propagations. Comparisons of kmerHMM with other leading methods on several data sets demonstrated its effectiveness and uniqueness. Especially, it achieved the best performance on more than half of the data sets. In addition, the multiple binding modes derived by kmerHMM are biologically meaningful and will be useful in interpreting other genome-wide data such as those generated from ChIP-seq. The executables and source codes are available at the authors' websites: e.g. http://www.cs.toronto.edu/?wkc/kmerHMM. 2013 The Author(s).
DNA motif elucidation using belief propagation.
Wong, Ka-Chun; Chan, Tak-Ming; Peng, Chengbin; Li, Yue; Zhang, Zhaolei
2013-09-01
Protein-binding microarray (PBM) is a high-throughout platform that can measure the DNA-binding preference of a protein in a comprehensive and unbiased manner. A typical PBM experiment can measure binding signal intensities of a protein to all the possible DNA k-mers (k=8∼10); such comprehensive binding affinity data usually need to be reduced and represented as motif models before they can be further analyzed and applied. Since proteins can often bind to DNA in multiple modes, one of the major challenges is to decompose the comprehensive affinity data into multimodal motif representations. Here, we describe a new algorithm that uses Hidden Markov Models (HMMs) and can derive precise and multimodal motifs using belief propagations. We describe an HMM-based approach using belief propagations (kmerHMM), which accepts and preprocesses PBM probe raw data into median-binding intensities of individual k-mers. The k-mers are ranked and aligned for training an HMM as the underlying motif representation. Multiple motifs are then extracted from the HMM using belief propagations. Comparisons of kmerHMM with other leading methods on several data sets demonstrated its effectiveness and uniqueness. Especially, it achieved the best performance on more than half of the data sets. In addition, the multiple binding modes derived by kmerHMM are biologically meaningful and will be useful in interpreting other genome-wide data such as those generated from ChIP-seq. The executables and source codes are available at the authors' websites: e.g. http://www.cs.toronto.edu/∼wkc/kmerHMM.
DNA motif elucidation using belief propagation
Wong, Ka-Chun
2013-06-29
Protein-binding microarray (PBM) is a high-throughout platform that can measure the DNA-binding preference of a protein in a comprehensive and unbiased manner. A typical PBM experiment can measure binding signal intensities of a protein to all the possible DNA k-mers (k = 8 ?10); such comprehensive binding affinity data usually need to be reduced and represented as motif models before they can be further analyzed and applied. Since proteins can often bind to DNA in multiple modes, one of the major challenges is to decompose the comprehensive affinity data into multimodal motif representations. Here, we describe a new algorithm that uses Hidden Markov Models (HMMs) and can derive precise and multimodal motifs using belief propagations. We describe an HMM-based approach using belief propagations (kmerHMM), which accepts and preprocesses PBM probe raw data into median-binding intensities of individual k-mers. The k-mers are ranked and aligned for training an HMM as the underlying motif representation. Multiple motifs are then extracted from the HMM using belief propagations. Comparisons of kmerHMM with other leading methods on several data sets demonstrated its effectiveness and uniqueness. Especially, it achieved the best performance on more than half of the data sets. In addition, the multiple binding modes derived by kmerHMM are biologically meaningful and will be useful in interpreting other genome-wide data such as those generated from ChIP-seq. The executables and source codes are available at the authors\\' websites: e.g. http://www.cs.toronto.edu/?wkc/kmerHMM. 2013 The Author(s).
International Nuclear Information System (INIS)
2002-01-01
The purpose of this Analysis and Model Report (AMR) supporting the Site Recommendation/License Application (SR/LA) for the Yucca Mountain Project is the development of elementary analyses of the interactions of a hypothetical dike with a repository drift (i.e., tunnel) and with the drift contents at the potential Yucca Mountain repository. This effort is intended to support the analysis of disruptive events for Total System Performance Assessment (TSPA). This AMR supports the Process Model Report (PMR) on disruptive events (CRWMS M and O 2000a). This purpose is documented in the development plan (DP) ''Coordinate Modeling of Dike Propagation Near Drifts Consequences for TSPA-SR/LA'' (CRWMS M and O 2000b). Evaluation of that Development Plan and the work to be conducted to prepare Interim Change Notice (ICN) 1 of this report, which now includes the design option of ''Open'' drifts, indicated that no revision to that DP was needed. These analyses are intended to provide reasonable bounds for a number of expected effects: (1) Temperature changes to the waste package from exposure to magma; (2) The gas flow available to degrade waste containers during the intrusion; (3) Movement of the waste package as it is displaced by the gas, pyroclasts and magma from the intruding dike (the number of packages damaged); (4) Movement of the backfill (Backfill is treated here as a design option); (5) The nature of the mechanics of the dike/drift interaction. These analyses serve two objectives: to provide preliminary analyses needed to support evaluation of the consequences of an intrusive event and to provide a basis for addressing some of the concerns of the Nuclear Regulatory Commission (NRC) expressed in the Igneous Activity Issue Resolution Status Report
Lie algebraic discussion for affinity based information diffusion in social networks
Shang, Yilun
2017-11-01
In this paper we develop a dynamical information diffusion model which features the affinity of people with information disseminated in social networks. Four types of agents, i.e., susceptible, informed, known, and refractory ones, are involved in the system, and the affinity mechanism composing of an affinity threshold which represents the fitness of information to be propagated is incorporated. The model can be generally described by a time-inhomogeneous Markov chain, which is governed by its master (Kolmogorov) equation. Based on the Wei-Norman method, we derive analytical solutions of the model by constructing a low-dimensional Lie algebra. Numerical examples are provided to illustrate the obtained theoretical results. This study provides useful insights into the closed-form solutions of complex social dynamics models through the Lie algebra method.
Propagation Characteristics of International Space Station Wireless Local Area Network
Sham, Catherine C.; Hwn, Shian U.; Loh, Yin-Chung
2005-01-01
This paper describes the application of the Uniform Geometrical Theory of Diffraction (UTD) for Space Station Wireless Local Area Networks (WLANs) indoor propagation characteristics analysis. The verification results indicate good correlation between UTD computed and measured signal strength. It is observed that the propagation characteristics are quite different in the Space Station modules as compared with those in the typical indoor WLANs environment, such as an office building. The existing indoor propagation models are not readily applicable to the Space Station module environment. The Space Station modules can be regarded as oversized imperfect waveguides. Two distinct propagation regions separated by a breakpoint exist. The propagation exhibits the guided wave characteristics. The propagation loss in the Space Station, thus, is much smaller than that in the typical office building. The path loss model developed in this paper is applicable for Space Station WLAN RF coverage and link performance analysis.
The Cutting Edge of Affinity Electrophoresis Technology
Kinoshita, Eiji; Kinoshita-Kikuta, Emiko; Koike, Tohru
2015-01-01
Affinity electrophoresis is an important technique that is widely used to separate and analyze biomolecules in the fields of biology and medicine. Both quantitative and qualitative information can be gained through affinity electrophoresis. Affinity electrophoresis can be applied through a variety of strategies, such as mobility shift electrophoresis, charge shift electrophoresis or capillary affinity electrophoresis. These strategies are based on changes in the electrophoretic patterns of biological macromolecules that result from interactions or complex-formation processes that induce changes in the size or total charge of the molecules. Nucleic acid fragments can be characterized through their affinity to other molecules, for example transcriptional factor proteins. Hydrophobic membrane proteins can be identified by means of a shift in the mobility induced by a charged detergent. The various strategies have also been used in the estimation of association/disassociation constants. Some of these strategies have similarities to affinity chromatography, in that they use a probe or ligand immobilized on a supported matrix for electrophoresis. Such methods have recently contributed to profiling of major posttranslational modifications of proteins, such as glycosylation or phosphorylation. Here, we describe advances in analytical techniques involving affinity electrophoresis that have appeared during the last five years. PMID:28248262
The Cutting Edge of Affinity Electrophoresis Technology.
Kinoshita, Eiji; Kinoshita-Kikuta, Emiko; Koike, Tohru
2015-03-18
Affinity electrophoresis is an important technique that is widely used to separate and analyze biomolecules in the fields of biology and medicine. Both quantitative and qualitative information can be gained through affinity electrophoresis. Affinity electrophoresis can be applied through a variety of strategies, such as mobility shift electrophoresis, charge shift electrophoresis or capillary affinity electrophoresis. These strategies are based on changes in the electrophoretic patterns of biological macromolecules that result from interactions or complex-formation processes that induce changes in the size or total charge of the molecules. Nucleic acid fragments can be characterized through their affinity to other molecules, for example transcriptional factor proteins. Hydrophobic membrane proteins can be identified by means of a shift in the mobility induced by a charged detergent. The various strategies have also been used in the estimation of association/disassociation constants. Some of these strategies have similarities to affinity chromatography, in that they use a probe or ligand immobilized on a supported matrix for electrophoresis. Such methods have recently contributed to profiling of major posttranslational modifications of proteins, such as glycosylation or phosphorylation. Here, we describe advances in analytical techniques involving affinity electrophoresis that have appeared during the last five years.
Mathematical analysis of frontal affinity chromatography in particle and membrane configurations.
Tejeda-Mansir, A; Montesinos, R M; Guzmán, R
2001-10-30
The scaleup and optimization of large-scale affinity-chromatographic operations in the recovery, separation and purification of biochemical components is of major industrial importance. The development of mathematical models to describe affinity-chromatographic processes, and the use of these models in computer programs to predict column performance is an engineering approach that can help to attain these bioprocess engineering tasks successfully. Most affinity-chromatographic separations are operated in the frontal mode, using fixed-bed columns. Purely diffusive and perfusion particles and membrane-based affinity chromatography are among the main commercially available technologies for these separations. For a particular application, a basic understanding of the main similarities and differences between particle and membrane frontal affinity chromatography and how these characteristics are reflected in the transport models is of fundamental relevance. This review presents the basic theoretical considerations used in the development of particle and membrane affinity chromatography models that can be applied in the design and operation of large-scale affinity separations in fixed-bed columns. A transport model for column affinity chromatography that considers column dispersion, particle internal convection, external film resistance, finite kinetic rate, plus macropore and micropore resistances is analyzed as a framework for exploring further the mathematical analysis. Such models provide a general realistic description of almost all practical systems. Specific mathematical models that take into account geometric considerations and transport effects have been developed for both particle and membrane affinity chromatography systems. Some of the most common simplified models, based on linear driving-force (LDF) and equilibrium assumptions, are emphasized. Analytical solutions of the corresponding simplified dimensionless affinity models are presented. Particular
Mobile Technology Affinity in Renal Transplant Recipients.
Reber, S; Scheel, J; Stoessel, L; Schieber, K; Jank, S; Lüker, C; Vitinius, F; Grundmann, F; Eckardt, K-U; Prokosch, H-U; Erim, Y
Medication nonadherence is a common problem in renal transplant recipients (RTRs). Mobile health approaches to improve medication adherence are a current trend, and several medication adherence apps are available. However, it is unknown whether RTRs use these technologies and to what extent. In the present study, the mobile technology affinity of RTRs was analyzed. We hypothesized significant age differences in mobile technology affinity and that mobile technology affinity is associated with better cognitive functioning as well as higher educational level. A total of 109 RTRs (63% male) participated in the cross-sectional study, with an overall mean age of 51.8 ± 14.2 years. The study included the Technology Experience Questionnaire (TEQ) for the assessment of mobile technology affinity, a cognitive test battery, and sociodemographic data. Overall, 57.4% of the patients used a smartphone or tablet and almost 45% used apps. The TEQ sum score was 20.9 in a possible range from 6 (no affinity to technology) to 30 (very high affinity). Younger patients had significantly higher scores in mobile technology affinity. The only significant gender difference was found in having fun with using electronic devices: Men enjoyed technology more than women did. Mobile technology affinity was positively associated with cognitive functioning and educational level. Young adult patients might profit most from mobile health approaches. Furthermore, high educational level and normal cognitive functioning promote mobile technology affinity. This should be kept in mind when designing mobile technology health (mHealth) interventions for RTRs. For beneficial mHealth interventions, further research on potential barriers and desired technologic features is necessary to adapt apps to patients' needs. Copyright © 2017 Elsevier Inc. All rights reserved.
Affinity Strings: Enterprise Data for Resource Recommendations
Directory of Open Access Journals (Sweden)
Shane Nackerud
2008-12-01
Full Text Available The University of Minnesota Libraries have created a MyLibrary portal, with databases and e-journals targeted to users, based on their affiliations. The University's enterprise authentication system provides an "affinity string", now used to personalize the MyLibrary portal. This affinity string automates discovery of a user's relationship to the University--describing a user's academic department and degree program or position at the University. Affinity strings also provide the Libraries with an anonymized view of resource usage, allowing data collection that respects users' privacy and lays the groundwork for automated recommendation of relevant resources based on the practices and habits of their peers.
Wave Propagation in Bimodular Geomaterials
Kuznetsova, Maria; Pasternak, Elena; Dyskin, Arcady; Pelinovsky, Efim
2016-04-01
Observations and laboratory experiments show that fragmented or layered geomaterials have the mechanical response dependent on the sign of the load. The most adequate model accounting for this effect is the theory of bimodular (bilinear) elasticity - a hyperelastic model with different elastic moduli for tension and compression. For most of geo- and structural materials (cohesionless soils, rocks, concrete, etc.) the difference between elastic moduli is such that their modulus in compression is considerably higher than that in tension. This feature has a profound effect on oscillations [1]; however, its effect on wave propagation has not been comprehensively investigated. It is believed that incorporation of bilinear elastic constitutive equations within theory of wave dynamics will bring a deeper insight to the study of mechanical behaviour of many geomaterials. The aim of this paper is to construct a mathematical model and develop analytical methods and numerical algorithms for analysing wave propagation in bimodular materials. Geophysical and exploration applications and applications in structural engineering are envisaged. The FEM modelling of wave propagation in a 1D semi-infinite bimodular material has been performed with the use of Marlow potential [2]. In the case of the initial load expressed by a harmonic pulse loading strong dependence on the pulse sign is observed: when tension is applied before compression, the phenomenon of disappearance of negative (compressive) strains takes place. References 1. Dyskin, A., Pasternak, E., & Pelinovsky, E. (2012). Periodic motions and resonances of impact oscillators. Journal of Sound and Vibration, 331(12), 2856-2873. 2. Marlow, R. S. (2008). A Second-Invariant Extension of the Marlow Model: Representing Tension and Compression Data Exactly. In ABAQUS Users' Conference.
Nazarov, Anton
2012-11-01
In this paper we present Affine.m-a program for computations in representation theory of finite-dimensional and affine Lie algebras and describe implemented algorithms. The algorithms are based on the properties of weights and Weyl symmetry. Computation of weight multiplicities in irreducible and Verma modules, branching of representations and tensor product decomposition are the most important problems for us. These problems have numerous applications in physics and we provide some examples of these applications. The program is implemented in the popular computer algebra system Mathematica and works with finite-dimensional and affine Lie algebras. Catalogue identifier: AENA_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AENB_v1_0.html Program obtainable from: CPC Program Library, Queen’s University, Belfast, UK Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 24 844 No. of bytes in distributed program, including test data, etc.: 1 045 908 Distribution format: tar.gz Programming language: Mathematica. Computer: i386-i686, x86_64. Operating system: Linux, Windows, Mac OS, Solaris. RAM: 5-500 Mb Classification: 4.2, 5. Nature of problem: Representation theory of finite-dimensional Lie algebras has many applications in different branches of physics, including elementary particle physics, molecular physics, nuclear physics. Representations of affine Lie algebras appear in string theories and two-dimensional conformal field theory used for the description of critical phenomena in two-dimensional systems. Also Lie symmetries play a major role in a study of quantum integrable systems. Solution method: We work with weights and roots of finite-dimensional and affine Lie algebras and use Weyl symmetry extensively. Central problems which are the computations of weight multiplicities, branching and fusion coefficients are solved using one general recurrent
Affinity purification of recombinant human plasminogen activator ...
African Journals Online (AJOL)
Affinity purification of recombinant human plasminogen activator from ... Screening antibody was performed using rhPA milk in an ELISA-elution assay. ... useful for purifying other tPA mutants or other novel recombinant milkderived proteins.
Quantum deformation of the affine transformation algebra
International Nuclear Information System (INIS)
Aizawa, N.; Sato, Haru-Tada
1994-01-01
We discuss a quantum deformation of the affine transformation algebra in one-dimensional space. It is shown that the quantum algebra has a non-cocommutative Hopf algebra structure, simple realizations and quantum tensor operators. (orig.)
Dynamics of Open Systems with Affine Maps
International Nuclear Information System (INIS)
Zhang Da-Jian; Liu Chong-Long; Tong Dian-Min
2015-01-01
Many quantum systems of interest are initially correlated with their environments and the reduced dynamics of open systems are an interesting while challenging topic. Affine maps, as an extension of completely positive maps, are a useful tool to describe the reduced dynamics of open systems with initial correlations. However, it is unclear what kind of initial state shares an affine map. In this study, we give a sufficient condition of initial states, in which the reduced dynamics can always be described by an affine map. Our result shows that if the initial states of the combined system constitute a convex set, and if the correspondence between the initial states of the open system and those of the combined system, defined by taking the partial trace, is a bijection, then the reduced dynamics of the open system can be described by an affine map. (paper)
On the Lp affine isoperimetric inequalities
Indian Academy of Sciences (India)
surface area measure on convex bodies. We also establish the reverse version of -Petty projection inequality and an affine isoperimetric inequality of − p K . Author Affiliations. Wuyang Yu1 Gangsong Leng2. Institute of Management Decision ...
Affinity chromatography: A versatile technique for antibody purification.
Arora, Sushrut; Saxena, Vikas; Ayyar, B Vijayalakshmi
2017-03-01
Antibodies continue to be extremely utilized entities in myriad applications including basic research, imaging, targeted delivery, chromatography, diagnostics, and therapeutics. At production stage, antibodies are generally present in complex matrices and most of their intended applications necessitate purification. Antibody purification has always been a major bottleneck in downstream processing of antibodies, due to the need of high quality products and associated high costs. Over the years, extensive research has focused on finding better purification methodologies to overcome this holdup. Among a plethora of different techniques, affinity chromatography is one of the most selective, rapid and easy method for antibody purification. This review aims to provide a detailed overview on affinity chromatography and the components involved in purification. An array of support matrices along with various classes of affinity ligands detailing their underlying working principles, together with the advantages and limitations of each system in purifying different types of antibodies, accompanying recent developments and important practical methodological considerations to optimize purification procedure are discussed. Copyright © 2016 Elsevier Inc. All rights reserved.
Project Integration Architecture: A Practical Demonstration of Information Propagation
Jones, William Henry
2005-01-01
One of the goals of the Project Integration Architecture (PIA) effort is to provide the ability to propagate information between disparate applications. With this ability, applications may then be formed into an application graph constituting a super-application. Such a super-application would then provide all of the analysis appropriate to a given technical system. This paper reports on a small demonstration of this concept in which a Computer Aided Design (CAD) application was connected to an inlet analysis code and geometry information automatically propagated from one to the other. The majority of the work reported involved not the technology of information propagation, but rather the conversion of propagated information into a form usable by the receiving application.
Different endothelin receptor affinities in dog tissues
International Nuclear Information System (INIS)
Loeffler, B.M.L.; Loehrer, W.
1991-01-01
Endothelin (ET) is a long-lasting potent vasoconstrictor-peptide. Here the authors report different binding affinities of endothelin-1 (ET-1) to ET-receptors of various dog tissues. Crude microsomal fractions were prepared after homogenisation of dog tissues in 50 mM Tris/HCl, 20 mM MnCl2, 1 mM EDTA, pH 7.4 by differential centrifugation. Aliquots of microsomal fractions (70 micrograms of protein) were incubated at 25 degrees C for 180 min in the presence of 20 pM 125I-ET-1 and various concentrations of cold ET-1. Four different ET-1 receptor binding affinities were found: adrenals, cerebrum, liver, heart, skeletal muscle and stomach microsomal membranes contained high affinity binding sites (Kd 50 - 80 pM, Bmax 60 - 250 fmol/mg). In cerebellum and spleen medium affinity ET-1 receptors (Kd 350 pM, Bmax 880 and 1200 fmol/mg respectively) were present. In comparison lung and kidney microsomes contained a low affinity ET-1 receptor (Kd 800 and 880 pM, Bmax 1600 and 350 fmol/mg). Receptors of even lower affinity were present in heart, intestine and liver microsomes with Kd values of 3 - 6 nM
Zhou, Zhongxing; Gao, Feng; Zhao, Huijuan; Zhang, Lixin
2012-11-21
New x-ray phase contrast imaging techniques without using synchrotron radiation confront a common problem from the negative effects of finite source size and limited spatial resolution. These negative effects swamp the fine phase contrast fringes and make them almost undetectable. In order to alleviate this problem, deconvolution procedures should be applied to the blurred x-ray phase contrast images. In this study, three different deconvolution techniques, including Wiener filtering, Tikhonov regularization and Fourier-wavelet regularized deconvolution (ForWaRD), were applied to the simulated and experimental free space propagation x-ray phase contrast images of simple geometric phantoms. These algorithms were evaluated in terms of phase contrast improvement and signal-to-noise ratio. The results demonstrate that the ForWaRD algorithm is most appropriate for phase contrast image restoration among above-mentioned methods; it can effectively restore the lost information of phase contrast fringes while reduce the amplified noise during Fourier regularization.
Directory of Open Access Journals (Sweden)
Neni Mulyani
2007-01-01
Full Text Available Research on the vegetative propagation of Rhizophora mucronata using hypocotyl cutting sistem was carried out at Faculty of Forestry, Bogor Agricultural University. Histological analysis of adventitous shoot was done at Biotechnology and Tree Breeding Laboratory, SEAMEO-BIOTROP. Three types of hypocotyl cutting (complete hypocotyl, top part of cut-hypocotyl and bottom part of cut-hypocotyl were induced using 6-BAP hormones at 0 and 500 ppm. Adventitous shoot of bottom part of cut-hypocotyl appeared 140 days after planting. Shoot from complete hypocotyl and top part of cut-hypocotyl grew earlier than adventitous shoot from bottom part of cut-hypocotyl. Hystologycal analysis of adventitous shoot showed the existance of primary meristem, stipule and leaf primordia. The growth of complete hipocotyl was higher than both of top part of cut-hypocotyl and bottom part of cut-hypocotyl. There was no effect of hormone induction on the shoot growth of them.
Yu, Hao; Rossi, Giammarco; Braglia, Andrea; Perrone, Guido
2016-08-10
The paper presents the development of a tool based on a back-propagation artificial neural network to assist in the accurate positioning of the lenses used to collimate the beam from semiconductor laser diodes along the so-called fast axis. After training using a Gaussian beam ray-equivalent model, the network is capable of indicating the tilt, decenter, and defocus of such lenses from the measured field distribution, so the operator can determine the errors with respect to the actual lens position and optimize the diode assembly procedure. An experimental validation using a typical configuration exploited in multi-emitter diode module assembly and fast axis collimating lenses with different focal lengths and numerical apertures is reported.
Propagation environments [Chapter 4
Douglass F. Jacobs; Thomas D. Landis; Tara Luna
2009-01-01
An understanding of all factors influencing plant growth in a nursery environment is needed for the successful growth and production of high-quality container plants. Propagation structures modify the atmospheric conditions of temperature, light, and relative humidity. Native plant nurseries are different from typical horticultural nurseries because plants must be...
Uncertainty Propagation in OMFIT
Smith, Sterling; Meneghini, Orso; Sung, Choongki
2017-10-01
A rigorous comparison of power balance fluxes and turbulent model fluxes requires the propagation of uncertainties in the kinetic profiles and their derivatives. Making extensive use of the python uncertainties package, the OMFIT framework has been used to propagate covariant uncertainties to provide an uncertainty in the power balance calculation from the ONETWO code, as well as through the turbulent fluxes calculated by the TGLF code. The covariant uncertainties arise from fitting 1D (constant on flux surface) density and temperature profiles and associated random errors with parameterized functions such as a modified tanh. The power balance and model fluxes can then be compared with quantification of the uncertainties. No effort is made at propagating systematic errors. A case study will be shown for the effects of resonant magnetic perturbations on the kinetic profiles and fluxes at the top of the pedestal. A separate attempt at modeling the random errors with Monte Carlo sampling will be compared to the method of propagating the fitting function parameter covariant uncertainties. Work supported by US DOE under DE-FC02-04ER54698, DE-FG2-95ER-54309, DE-SC 0012656.
International Nuclear Information System (INIS)
Dvoeglazov, V.V.
1997-01-01
An analog of the j = 1/2 Feynman-Dyson propagator is presented in the framework of the j = 1 Weinberg's theory. The basis for this construction is the concept of the Weinberg field as a system of four field functions differing by parity and by dual transformations. (orig.)
Czech Academy of Sciences Publication Activity Database
Schejbal, V.; Bezoušek, P.; Čermák, D.; NĚMEC, Z.; Fišer, Ondřej; Hájek, M.
2006-01-01
Roč. 15, č. 1 (2006), s. 17-24 ISSN 1210-2512 R&D Projects: GA MPO(CZ) FT-TA2/030 Institutional research plan: CEZ:AV0Z30420517 Keywords : Ultra wide band * UWB antennas * UWB propagation * multipath effects Subject RIV: JB - Sensors, Measurment, Regulation
National Research Council Canada - National Science Library
Gray, William
1994-01-01
This paper discusses the question of tropical cyclone propagation or why the average tropical cyclone moves 1-2 m/s faster and usually 10-20 deg to the left of its surrounding (or 5-7 deg radius) deep layer (850-300 mb) steering current...
The metric-affine gravitational theory as the gauge theory of the affine group
International Nuclear Information System (INIS)
Lord, E.A.
1978-01-01
The metric-affine gravitational theory is shown to be the gauge theory of the affine group, or equivalently, the gauge theory of the group GL(4,R) of tetrad deformations in a space-time with a locally Minkowskian metric. The identities of the metric-affine theory, and the relationship between them and those of general relativity and Sciama-Kibble theory, are derived. (Auth.)
International Nuclear Information System (INIS)
Villarreal, Oscar D.; Yu, Lili; Rodriguez, Roberto A.; Chen, Liao Y.
2017-01-01
Computing the ligand-protein binding affinity (or the Gibbs free energy) with chemical accuracy has long been a challenge for which many methods/approaches have been developed and refined with various successful applications. False positives and, even more harmful, false negatives have been and still are a common occurrence in practical applications. Inevitable in all approaches are the errors in the force field parameters we obtain from quantum mechanical computation and/or empirical fittings for the intra- and inter-molecular interactions. These errors propagate to the final results of the computed binding affinities even if we were able to perfectly implement the statistical mechanics of all the processes relevant to a given problem. And they are actually amplified to various degrees even in the mature, sophisticated computational approaches. In particular, the free energy perturbation (alchemical) approaches amplify the errors in the force field parameters because they rely on extracting the small differences between similarly large numbers. In this paper, we develop a hybrid steered molecular dynamics (hSMD) approach to the difficult binding problems of a ligand buried deep inside a protein. Sampling the transition along a physical (not alchemical) dissociation path of opening up the binding cavity- -pulling out the ligand- -closing back the cavity, we can avoid the problem of error amplifications by not relying on small differences between similar numbers. We tested this new form of hSMD on retinol inside cellular retinol-binding protein 1 and three cases of a ligand (a benzylacetate, a 2-nitrothiophene, and a benzene) inside a T4 lysozyme L99A/M102Q(H) double mutant. In all cases, we obtained binding free energies in close agreement with the experimentally measured values. This indicates that the force field parameters we employed are accurate and that hSMD (a brute force, unsophisticated approach) is free from the problem of error amplification suffered by
Hirota's solitons in the affine and the conformal affine Toda models
International Nuclear Information System (INIS)
Aratyn, H.; Constantinidis, C.P.; Ferreira, L.A.; Gomes, J.F.; Zimerman, A.H.
1993-01-01
We use Hirota's method formulated as a recursive scheme to construct a complete set of soliton solutions for the affine Toda field theory based on an arbitrary Lie algebra. Our solutions include a new class of solitons connected with two different types of degeneracies encountered in Hirota's perturbation approach. We also derive an universal mass formula for all Hirota's solutions to the affine Toda model valid for all underlying Lie groups. Embedding of the affine Toda model in the conformal affine Toda model plays a crucial role in this analysis. (orig.)
Affinity-tuning leukocyte integrin for development of safe therapeutics
Park, Spencer
Much attention has been given to the molecular and cellular pathways linking inflammation with cancer and the local tumor environment to identify new target molecules that could lead to improved diagnosis and treatment. Among the many molecular players involved in the complex response, central to the induction of inflammation is intercellular adhesion molecule (ICAM)-1, which is of particular interest for its highly sensitive and localized expression in response to inflammatory signals. ICAM-1, which has been implicated to play a critical role in tumor progression in various types of cancer, has also been linked to cancer metastases, where ICAM-1 facilitates the spread of metastatic cancer cells to secondary sites. This unique expression profile of ICAM-1 throughout solid tumor microenvironment makes ICAM-1 an intriguing molecular target, which holds great potential as an important diagnostic and therapeutic tool. Herein, we have engineered the ligand binding domain, or the inserted (I) domain of a leukocyte integrin, to exhibit a wide range of monovalent affinities to the natural ligand, ICAM-1. Using the resulting I domain variants, we have created drug and gene delivery nanoparticles, as well as targeted immunotherapeutics that have the ability to bind and migrate to inflammatory sites prevalent in tumors and the associated microenvironment. Through the delivery of diagnostic agents, chemotherapeutics, and immunotherapeutics, the following chapters demonstrate that the affinity enhancements achieved by directed evolution bring the affinity of I domains into the range optimal for numerous applications.
K-AP: Generating specified K clusters by efficient Affinity Propagation
Zhang, Xiangliang; Wang, Wei; Nø rvå g, Kjetil; Sebag, Michè le
2010-01-01
and experimental validation, K-AP was shown to be able to directly generate K clusters as user defined, with a negligible increase of computational cost compared to AP. In the meanwhile, K-AP preserves the clustering quality as AP in terms of the distortion. K
Anomaly Detection for Internet of Vehicles: A Trust Management Scheme with Affinity Propagation
Directory of Open Access Journals (Sweden)
Shu Yang
2016-01-01
Full Text Available Anomaly detection is critical for intelligent vehicle (IV collaboration. Forming clusters/platoons, IVs can work together to accomplish complex jobs that they are unable to perform individually. To improve security and efficiency of Internet of Vehicles, IVs’ anomaly detection has been extensively studied and a number of trust-based approaches have been proposed. However, most of these proposals either pay little attention to leader-based detection algorithm or ignore the utility of networked Roadside-Units (RSUs. In this paper, we introduce a trust-based anomaly detection scheme for IVs, where some malicious or incapable vehicles are existing on roads. The proposed scheme works by allowing IVs to detect abnormal vehicles, communicate with each other, and finally converge to some trustworthy cluster heads (CHs. Periodically, the CHs take responsibility for intracluster trust management. Moreover, the scheme is enhanced with a distributed supervising mechanism and a central reputation arbitrator to assure robustness and fairness in detecting process. The simulation results show that our scheme can achieve a low detection failure rate below 1%, demonstrating its ability to detect and filter the abnormal vehicles.
Photon Propagation through Linearly Active Dimers
Directory of Open Access Journals (Sweden)
José Delfino Huerta Morales
2017-06-01
Full Text Available We provide an analytic propagator for non-Hermitian dimers showing linear gain or losses in the quantum regime. In particular, we focus on experimentally feasible realizations of the PT -symmetric dimer and provide their mean photon number and second order two-point correlation. We study the propagation of vacuum, single photon spatially-separable, and two-photon spatially-entangled states. We show that each configuration produces a particular signature that might signal their possible uses as photon switches, semi-classical intensity-tunable sources, or spatially entangled sources to mention a few possible applications.
Propagator of stochastic electrodynamics
International Nuclear Information System (INIS)
Cavalleri, G.
1981-01-01
The ''elementary propagator'' for the position of a free charged particle subject to the zero-point electromagnetic field with Lorentz-invariant spectral density proportionalω 3 is obtained. The nonstationary process for the position is solved by the stationary process for the acceleration. The dispersion of the position elementary propagator is compared with that of quantum electrodynamics. Finally, the evolution of the probability density is obtained starting from an initial distribution confined in a small volume and with a Gaussian distribution in the velocities. The resulting probability density for the position turns out to be equal, to within radiative corrections, to psipsi* where psi is the Kennard wave packet. If the radiative corrections are retained, the present result is new since the corresponding expression in quantum electrodynamics has not yet been found. Besides preceding quantum electrodynamics for this problem, no renormalization is required in stochastic electrodynamics
Preventing Unofficial Information Propagation
Le, Zhengyi; Ouyang, Yi; Xu, Yurong; Ford, James; Makedon, Fillia
Digital copies are susceptible to theft and vulnerable to leakage, copying, or manipulation. When someone (or some group), who has stolen, leaked, copied, or manipulated digital documents propagates the documents over the Internet and/or distributes those through physical distribution channels many challenges arise which document holders must overcome in order to mitigate the impact to their privacy or business. This paper focuses on the propagation problem of digital credentials, which may contain sensitive information about a credential holder. Existing work such as access control policies and the Platform for Privacy Preferences (P3P) assumes that qualified or certified credential viewers are honest and reliable. The proposed approach in this paper uses short-lived credentials based on reverse forward secure signatures to remove this assumption and mitigate the damage caused by a dishonest or honest but compromised viewer.
Kim, Jongsu; Kwon, Seung-Gab; Back, Seunghyun; Kang, Bongchul
2018-03-01
We present a novel laser-induced surface treatment process to rapidly control the spatial wettabilities of various functional solutions with submicron to micron resolutions. Ultrathin hydrophobic self-assembled monolayers (SAMs) that little absorb typical laser lights due to short penetration depth were selectively deactivated by instantaneous interaction with laser-induced metallic plasmas. The spatial region of the deactivated SAM, which corresponds to process resolution, is adjustable by controlling the spatial propagation of the plasma. This method leads to the parallel formation of hydrophilic functional solutions on glass substrates with a minimum resolution on the submicron scale. To show its feasibility in device engineering fields, this method was applied to the cost-effective fabrication of electronics and biosensors. Rapid self-patterning of electronic and biological functional solutions (silver nanoparticle solution and streptavidin protein solution) was successfully realized by selective deactivation of two different SAMs (tridecafluoro-1,1,2,2-tetrahydrooctyltrichlorosilane (FOTS) for electronics and the hetero-hybrid SAM (octadecyltrichlorosilane (OTS)/2-[methoxy(polyethyleneoxy)propyl] trichlorosilane (PEG)) for biosensors). As a result, this method can be exploited for the rapid and low-cost fabrication of various thin film devices such as electronics, biosensors, energy, displays, and photonics.
On Affine Fusion and the Phase Model
Directory of Open Access Journals (Sweden)
Mark A. Walton
2012-11-01
Full Text Available A brief review is given of the integrable realization of affine fusion discovered recently by Korff and Stroppel. They showed that the affine fusion of the su(n Wess-Zumino-Novikov-Witten (WZNW conformal field theories appears in a simple integrable system known as the phase model. The Yang-Baxter equation leads to the construction of commuting operators as Schur polynomials, with noncommuting hopping operators as arguments. The algebraic Bethe ansatz diagonalizes them, revealing a connection to the modular S matrix and fusion of the su(n WZNW model. The noncommutative Schur polynomials play roles similar to those of the primary field operators in the corresponding WZNW model. In particular, their 3-point functions are the su(n fusion multiplicities. We show here how the new phase model realization of affine fusion makes obvious the existence of threshold levels, and how it accommodates higher-genus fusion.
Affine coherent states and Toeplitz operators
Hutníková, Mária; Hutník, Ondrej
2012-06-01
We study a parameterized family of Toeplitz operators in the context of affine coherent states based on the Calderón reproducing formula (= resolution of unity on L_2( {R})) and the specific admissible wavelets (= affine coherent states in L_2( {R})) related to Laguerre functions. Symbols of such Calderón-Toeplitz operators as individual coordinates of the affine group (= upper half-plane with the hyperbolic geometry) are considered. In this case, a certain class of pseudo-differential operators, their properties and their operator algebras are investigated. As a result of this study, the Fredholm symbol algebras of the Calderón-Toeplitz operator algebras for these particular cases of symbols are described. This article is part of a special issue of Journal of Physics A: Mathematical and Theoretical devoted to ‘Coherent states: mathematical and physical aspects’.
Directory of Open Access Journals (Sweden)
Tsang-Pai Liu
2012-03-01
Conclusion: In summary, the greater predictive accuracy and precision made the application of BIA with the BP–ANN mathematical model more feasible for the clinical measurement of FM and FFM in the lower limbs of elderly people.
The dynamics of metric-affine gravity
International Nuclear Information System (INIS)
Vitagliano, Vincenzo; Sotiriou, Thomas P.; Liberati, Stefano
2011-01-01
Highlights: → The role and the dynamics of the connection in metric-affine theories is explored. → The most general second order action does not lead to a dynamical connection. → Including higher order invariants excites new degrees of freedom in the connection. → f(R) actions are also discussed and shown to be a non- representative class. - Abstract: Metric-affine theories of gravity provide an interesting alternative to general relativity: in such an approach, the metric and the affine (not necessarily symmetric) connection are independent quantities. Furthermore, the action should include covariant derivatives of the matter fields, with the covariant derivative naturally defined using the independent connection. As a result, in metric-affine theories a direct coupling involving matter and connection is also present. The role and the dynamics of the connection in such theories is explored. We employ power counting in order to construct the action and search for the minimal requirements it should satisfy for the connection to be dynamical. We find that for the most general action containing lower order invariants of the curvature and the torsion the independent connection does not carry any dynamics. It actually reduces to the role of an auxiliary field and can be completely eliminated algebraically in favour of the metric and the matter field, introducing extra interactions with respect to general relativity. However, we also show that including higher order terms in the action radically changes this picture and excites new degrees of freedom in the connection, making it (or parts of it) dynamical. Constructing actions that constitute exceptions to this rule requires significant fine tuned and/or extra a priori constraints on the connection. We also consider f(R) actions as a particular example in order to show that they constitute a distinct class of metric-affine theories with special properties, and as such they cannot be used as representative toy
Phosphopeptide enrichment by immobilized metal affinity chromatography
DEFF Research Database (Denmark)
Thingholm, Tine E.; Larsen, Martin R.
2016-01-01
Immobilized metal affinity chromatography (IMAC) has been the method of choice for phosphopeptide enrichment prior to mass spectrometric analysis for many years and it is still used extensively in many laboratories. Using the affinity of negatively charged phosphate groups towards positively...... charged metal ions such as Fe3+, Ga3+, Al3+, Zr4+, and Ti4+ has made it possible to enrich phosphorylated peptides from peptide samples. However, the selectivity of most of the metal ions is limited, when working with highly complex samples, e.g., whole-cell extracts, resulting in contamination from...
Control and estimation of piecewise affine systems
Xu, Jun
2014-01-01
As a powerful tool to study nonlinear systems and hybrid systems, piecewise affine (PWA) systems have been widely applied to mechanical systems. Control and Estimation of Piecewise Affine Systems presents several research findings relating to the control and estimation of PWA systems in one unified view. Chapters in this title discuss stability results of PWA systems, using piecewise quadratic Lyapunov functions and piecewise homogeneous polynomial Lyapunov functions. Explicit necessary and sufficient conditions for the controllability and reachability of a class of PWA systems are
New unitary affine-Virasoro constructions
International Nuclear Information System (INIS)
Halpern, M.B.; Kiritsis, E.; Obers, N.A.; Poratti, M.; Yamron, J.P.
1990-01-01
This paper reports on a quasi-systematic investigation of the Virasoro master equation. The space of all affine-Virasoro constructions is organized by K-conjugation into affine-Virasoro nests, and an estimate of the dimension of the space shows that most solutions await discovery. With consistent ansatze for the master equation, large classes of new unitary nests are constructed, including quadratic deformation nests with continuous conformal weights, and unitary irrational central charge nests, which may dominate unitary rational central charge on compact g
Energy Technology Data Exchange (ETDEWEB)
Pisani, F
2000-02-15
In the fast igniter scheme, a recent approach proposed for the inertial confinement fusion, the idea is to dissociate the fuel ignition phase from its compression. The ignition phase would be then achieved by means of an external energy source: a fast electron beam generated by the interaction with an ultra-intense laser. The main goal of this work is to study the mechanisms of the hot electron energy transfer to the compressed fuel. We intent in particular to study the role of the electric and collisional effects involved in the hot electron propagation in a medium with properties similar to the compressed fuel. We carried out two experiments, one at the Vulcan laser facility (England) and the second one at the new LULI 100 TW laser (France). During the first experiment, we obtained the first results on the hot electron propagation in a dense and hot plasma. The innovating aspect of this work was in particular the use of the laser-shock technique to generate high pressures, allowing the strongly correlated and degenerated plasma to be created. The role of the electric and magnetic effects due to the space charge associated with the fast electron beam has been investigated in the second experiment. Here we studied the propagation in materials with different electrical characteristics: an insulator and a conductor. The analysis of the results showed that only by taking into account simultaneously the two propagation mechanisms (collisions and electric effects) a correct treatment of the energy deposition is possible. We also showed the importance of taking into account the induced modifications due to the electrons beam crossing the target, especially the induced heating. (author)
Zhao, L.; Wen, L.
2009-12-01
The shear wave splitting measurements provide important information on mantle flow, deformation and mineralogy. They are now routinely made using the method developed by Silver and Chan (1994). More and more dense regional observations also begin to reveal sharp spatial variations of seismic anisotropy which could not be explained by simplified horizontal homogeneous anisotropic structures. To better constrain the mantle anisotropy beneath those regions, we developed a two-dimensional hybrid method for simulating seismic wave propagation in laterally-varying anisotropic media [Zhao et al., 2008]. In this presentation, we apply the method to study anisotropic structures beneath central Tibet by waveform modeling the teleseismic SKS phases recorded in the International Deep Profiling of Tibet and the Himalayas project (INDEPTH) III. Using data from two events that were selected such that the stations and sources can be approximated as a two-dimensional profile, we derived an optimal model for the anisotropic structures of the upper mantle beneath the study region: a 50-70 km thick anisotropic layer with a fast direction trending N95°E beneath the Qiangtang block, a 150 km thick and 60 km wide anisotropic segment with an axis trending N95°E beneath the northernmost Lhasa block, and a ~30 km wide transition zone in between within which the fast direction trends N45°E and the depth extent of anisotropy decreases northward sharply. Synthetic waveform modeling further suggests that an anisotropic model with a horizontal symmetry axis can explain the observations better than that with a dipping symmetry, and a low velocity zone possibly underlies or mixes with the anisotropic structures in the northern portion of the region. The optimal model yields synthetic seismograms that are in good agreement with the observations in both amplitudes and relative arrival times of SKS phases. Synthetic tests also indicate that different elastic constants, source parameters and depth
Energy Technology Data Exchange (ETDEWEB)
Litaize, O
2000-07-01
The goal of this thesis is to study the neutron propagation by reflection from lacunar medium interfaces. The most efficient method to calculate this type of propagation is to use the concept of albedo. Actual version of NARCISSE code uses a simple formulation of angular differential albedos and so, can only treat single reflections. Multiple reflections treatment needs the knowledge of neutron spectrum after reflection. This energetic information is contained in double angular and energy differential albedos. The first step of this study consists to generate these albedos for various materials. Several methods have been tested and the Monte Carlo method was retained. A new estimator has been developed and validated in the Mote Carlo transport code TRIPOLI-4. It computes, during the simulation of the neutron history, the angular and energy reflection probability at each collision site. The second step consists to generate an interpolation scheme and albedo libraries for various materials. A new version of NARCISSE was developed to use these libraries and the interpolation module. Spectrum and dose rates comparisons were made between codes to validate these albedos. The neutron propagation by multiple reflections can be studied now, by using this new version of Narcisse. (author)
Energy Technology Data Exchange (ETDEWEB)
Litaize, O
2000-07-01
The goal of this thesis is to study the neutron propagation by reflection from lacunar medium interfaces. The most efficient method to calculate this type of propagation is to use the concept of albedo. Actual version of NARCISSE code uses a simple formulation of angular differential albedos and so, can only treat single reflections. Multiple reflections treatment needs the knowledge of neutron spectrum after reflection. This energetic information is contained in double angular and energy differential albedos. The first step of this study consists to generate these albedos for various materials. Several methods have been tested and the Monte Carlo method was retained. A new estimator has been developed and validated in the Mote Carlo transport code TRIPOLI-4. It computes, during the simulation of the neutron history, the angular and energy reflection probability at each collision site. The second step consists to generate an interpolation scheme and albedo libraries for various materials. A new version of NARCISSE was developed to use these libraries and the interpolation module. Spectrum and dose rates comparisons were made between codes to validate these albedos. The neutron propagation by multiple reflections can be studied now, by using this new version of Narcisse. (author)
Thermal propagation and stability in superconducting films
International Nuclear Information System (INIS)
Gray, K.E.; Kampwirth, R.T.; Zasadzinski, J.F.; Ducharme, S.P.
1983-01-01
Thermal propagation and stable hot spots (normal domains) are studied in various high Tsub(c) superconducting films (Nb 3 Sn, Nb, NbN and Nb 3 Ge). A new energy balance is shown to give reasonable quantitative agreement of the dependence of the propagation velocity on the length of short normal domains. The steady state (zero velocity) measurements indicate the existence of two distinct situations for films on high thermal conductivity (sapphire) substrates. For low power per unit area the film and substrate have the same temperature, and the thermal properties of the substrate dominate. However, for higher power densities in short hot spots, the coupling is relatively weak and the thermal properties of the film alone are important. Here a connection is made between the critical current stability of superconducting films and a critical hot spot size for thermal propagation. As a result efficient heat removal is shown to dominate the stabilisation of superconducting films. The strong and weak coupling situations also lead to modifications of the models for propagation velocities on sapphire substrates. Self-healing of hot spots and other phenomena in superconducting film are explained. The potential use of the thermal propagation model in applications of superconductors, especially switches is discussed. (author)
Nonlinear operators and their propagators
International Nuclear Information System (INIS)
Schwartz, C.
1997-01-01
Mathematical physicists are familiar with a large set of tools designed for dealing with linear operators, which are so common in both the classical and quantum theories; but many of those tools are useless with nonlinear equations of motion. In this work a general algebra and calculus is developed for working with nonlinear operators: The basic new tool being the open-quotes slash product,close quotes defined by A(1+εB) =A+εA/B+O(ε 2 ). For a generic time development equation, the propagator is constructed and then there follows the formal version of time dependent perturbation theory, in remarkable similarity to the linear situation. A nonperturbative approximation scheme capable of producing high accuracy computations, previously developed for linear operators, is shown to be applicable as well in the nonlinear domain. A number of auxiliary mathematical properties and examples are given. copyright 1997 American Institute of Physics
Crossing Chris: Some Markerian Affinities
Directory of Open Access Journals (Sweden)
Adrian Martin
2010-01-01
-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;}
Abstract (E: This essay creatively explores a group of artists, writers, and other special individuals whose work or life story can be described as having an intriguing affinity with the protean career of Chris Marker. Avoiding the ‘usual suspects’ (such as Godard or Sebald, it discusses gossip columnist Milt Machlin, record collector Harry Smith, painter Gianfranco Baruchello, writer-filmmaker Edgardo Cozarinsky, and several others. From this constellation, a particular view of Markerian poetics emerges, touching upon the meanings of anonymity, storytelling, history and archiving.
Abstract (F: Cet essai brosse de manière créative le portrait d’un groupe d'artistes, d'écrivains et d'autres personnes particulières dont le travail ou la biographie peuvent être décrits comme montrant une étrange mais certaine connivence avec la carrière protéiforme de Chris Marker. Evitant les lieux communs (comme Godard ou Sebald, cet article trace des références moins attendues :
Development of an aptamer-based affinity purification method for vascular endothelial growth factor
Directory of Open Access Journals (Sweden)
Maren Lönne
2015-12-01
Full Text Available Since aptamers bind their targets with high affinity and specificity, they are promising alternative ligands in protein affinity purification. As aptamers are chemically synthesized oligonucleotides, they can be easily produced in large quantities regarding GMP conditions allowing their application in protein production for therapeutic purposes. Several advantages of aptamers compared to antibodies are described in general within this paper. Here, an aptamer directed against the human Vascular Endothelial Growth Factor (VEGF was used as affinity ligand for establishing a purification platform for VEGF in small scale. The aptamer was covalently immobilized on magnetic beads in a controlled orientation resulting in a functional active affinity matrix. Target binding was optimized by introduction of spacer molecules and variation of aptamer density. Further, salt-induced target elution was demonstrated as well as VEGF purification from a complex protein mixture proving the specificity of protein-aptamer binding.
Affinity Programs and the Real Estate Brokerage Industry
G Stacy Sirmans; David A. Macpherson
2001-01-01
This study surveys active real estate brokers obtaining information on involvement in affinity programs and referral/relocation networks. Some results regarding affinity involvement are: (a) 13% of respondents reported affinity affilliations, 75% reported no affiliations, and 12% indicated plans to become involved within the next year; (b) about half having affinity affiliations were involved with 2-4 groups; (c) affinity relationships were most often with membership organizations, corporatio...
Polynomials associated with equilibria of affine Toda-Sutherland systems
International Nuclear Information System (INIS)
Odake, S; Sasaki, R
2004-01-01
An affine Toda-Sutherland system is a quasi-exactly solvable multi-particle dynamics based on an affine simple root system. It is a 'cross' between two well-known integrable multi-particle dynamics, an affine Toda molecule (exponential potential, periodic nearest-neighbour interaction) and a Sutherland system (inverse sine-square interaction). Polynomials describing the equilibrium positions of affine Toda-Sutherland systems are determined for all affine simple root systems
Wave propagation in elastic solids
Achenbach, Jan
1984-01-01
The propagation of mechanical disturbances in solids is of interest in many branches of the physical scienses and engineering. This book aims to present an account of the theory of wave propagation in elastic solids. The material is arranged to present an exposition of the basic concepts of mechanical wave propagation within a one-dimensional setting and a discussion of formal aspects of elastodynamic theory in three dimensions, followed by chapters expounding on typical wave propagation phenomena, such as radiation, reflection, refraction, propagation in waveguides, and diffraction. The treat
On propagation of axisymmetric waves in pressurized functionally graded elastomeric hollow cylinders
Wu, Bin; Su, Yipin; Liu, Dongying; Chen, Weiqiu; Zhang, Chuanzeng
2018-05-01
Soft materials can be designed with a functionally graded (FG) property for specific applications. Such material inhomogeneity can also be found in many soft biological tissues whose functionality is only partly understood to date. In this paper, we analyze the axisymmetric guided wave propagation in a pressurized FG elastomeric hollow cylinder. The cylinder is subjected to a combined action of axial pre-stretch and pressure difference applied to the inner and outer cylindrical surfaces. We consider both torsional waves and longitudinal waves propagating in the FG cylinder made of incompressible isotropic elastomer, which is characterized by the Mooney-Rivlin strain energy function but with the material parameters varying with the radial coordinate in an affine way. The pressure difference generates an inhomogeneous deformation field in the FG cylinder, which dramatically complicates the superimposed wave problem described by the small-on-large theory. A particularly efficient approach is hence employed which combines the state-space formalism for the incremental wave motion with the approximate laminate or multi-layer technique. Dispersion relations for the two types of axisymmetric guided waves are then derived analytically. The accuracy and convergence of the proposed approach is validated numerically. The effects of the pressure difference, material gradient, and axial pre-stretch on both the torsional and the longitudinal wave propagation characteristics are discussed in detail through numerical examples. It is found that the frequency of axisymmetric waves depends nonlinearly on the pressure difference and the material gradient, and an increase in the material gradient enhances the capability of the pressure difference to adjust the wave behavior in the FG cylinder. This work provides a theoretical guidance for characterizing FG soft materials by in-situ ultrasonic nondestructive evaluation and for designing tunable waveguides via material tailoring along
Temporal scaling in information propagation
Huang, Junming; Li, Chao; Wang, Wen-Qiang; Shen, Hua-Wei; Li, Guojie; Cheng, Xue-Qi
2014-06-01
For the study of information propagation, one fundamental problem is uncovering universal laws governing the dynamics of information propagation. This problem, from the microscopic perspective, is formulated as estimating the propagation probability that a piece of information propagates from one individual to another. Such a propagation probability generally depends on two major classes of factors: the intrinsic attractiveness of information and the interactions between individuals. Despite the fact that the temporal effect of attractiveness is widely studied, temporal laws underlying individual interactions remain unclear, causing inaccurate prediction of information propagation on evolving social networks. In this report, we empirically study the dynamics of information propagation, using the dataset from a population-scale social media website. We discover a temporal scaling in information propagation: the probability a message propagates between two individuals decays with the length of time latency since their latest interaction, obeying a power-law rule. Leveraging the scaling law, we further propose a temporal model to estimate future propagation probabilities between individuals, reducing the error rate of information propagation prediction from 6.7% to 2.6% and improving viral marketing with 9.7% incremental customers.
DEFF Research Database (Denmark)
Vorum, H; Pedersen, A O; Honoré, B
1992-01-01
Binding equilibria for decanoate to a defatted, commercially available human serum albumin preparation were investigated by dialysis exchange rate determinations. The binding isotherm could not be fitted by the general binding equation. It was necessary to assume that the preparation was a mixture...... of two albumin components about 40% of the albumin having high affinity and about 60% having low affinity. By affinity chromatography we succeeded in purifying the low-affinity component from the mixture. The high-affinity component, however, could not be isolated. We further analyzed the fatty acid...... and drug binding abilities of the low-affinity component. The fatty acids decanoate, laurate, myristate and palmitate were bound with higher affinity to the mixture than to the low-affinity component. Diazepam was bound with nearly the same affinity to the low-affinity component as to the albumin mixture...
Fan Affinity Laws from a Collision Model
Bhattacharjee, Shayak
2012-01-01
The performance of a fan is usually estimated using hydrodynamical considerations. The calculations are long and involved and the results are expressed in terms of three affinity laws. In this paper we use kinetic theory to attack this problem. A hard sphere collision model is used, and subsequently a correction to account for the flow behaviour…
It's the peptide-MHC affinity, stupid.
Kammertoens, Thomas; Blankenstein, Thomas
2013-04-15
Adoptively transferred T cells can reject large established tumors, but recurrence due to escape variants frequently occurs. In this issue of Cancer Cell, Engels et al. demonstrate that the affinity of the target peptide to the MHC molecule determines whether large tumors will relapse following adoptive T cell therapy. Copyright © 2013 Elsevier Inc. All rights reserved.
General super Virasoro construction on affine G
International Nuclear Information System (INIS)
Mohammedi, N.
1990-10-01
We consider a bosonic current algebra and a theory of free fermions and construct a general N = 1 super Virasoro current algebra. We obtain a master-set of equations which comprises the bosonic master equation for general Virasoro construction on affine G. As an illustration we study the case of the group SU(2). (author). 13 refs
Prediction of tides using back-propagation neural networks
Digital Repository Service at National Institute of Oceanography (India)
Mandal, S.
Prediction of tides is very much essential for human activities and to reduce the construction cost in marine environment. This paper presents an application of the artificial neural network with back-propagation procedures for accurate prediction...
Energy Technology Data Exchange (ETDEWEB)
Orcutt, Kelly Davis; Slusarczyk, Adrian L. [Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Cieslewicz, Maryelise [Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Ruiz-Yi, Benjamin [Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Bhushan, Kumar R. [Division of Hematology/Oncology, Beth Israel Deaconess Medical Center, Boston, MA 02215 (United States); Frangioni, John V. [Division of Hematology/Oncology, Beth Israel Deaconess Medical Center, Boston, MA 02215 (United States); Department of Radiology, Beth Israel Deaconess Medical Center, Boston, MA 02215 (United States); Wittrup, K. Dane, E-mail: wittrup@mit.ed [Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States)
2011-02-15
Introduction: In pretargeted radioimmunotherapy (PRIT), a bifunctional antibody is administered and allowed to pre-localize to tumor cells. Subsequently, a chelated radionuclide is administered and captured by cell-bound antibody while unbound hapten clears rapidly from the body. We aim to engineer high-affinity binders to 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid (DOTA) chelates for use in PRIT applications. Methods: We mathematically modeled antibody and hapten pharmacokinetics to analyze hapten tumor retention as a function of hapten binding affinity. Motivated by model predictions, we used directed evolution and yeast surface display to affinity mature the 2D12.5 antibody to DOTA, reformatted as a single chain variable fragment (scFv). Results: Modeling predicts that for high antigen density and saturating bsAb dose, a hapten-binding affinity of 100 pM is needed for near-maximal hapten retention. We affinity matured 2D12.5 with an initial binding constant of about 10 nM to DOTA-yttrium chelates. Affinity maturation resulted in a 1000-fold affinity improvement to biotinylated DOTA-yttrium, yielding an 8.2{+-}1.9 picomolar binder. The high-affinity scFv binds DOTA complexes of lutetium and gadolinium with similar picomolar affinity and indium chelates with low nanomolar affinity. When engineered into a bispecific antibody construct targeting carcinoembryonic antigen, pretargeted high-affinity scFv results in significantly higher tumor retention of a {sup 111}In-DOTA hapten compared to pretargeted wild-type scFv in a xenograft mouse model. Conclusions: We have engineered a versatile, high-affinity, DOTA-chelate-binding scFv. We anticipate it will prove useful in developing pretargeted imaging and therapy protocols to exploit the potential of a variety of radiometals.
Bolt beam propagation analysis
Shokair, I. R.
BOLT (Beam on Laser Technology) is a rocket experiment to demonstrate electron beam propagation on a laser ionized plasma channel across the geomagnetic field in the ion focused regime (IFR). The beam parameters for BOLT are: beam current I(sub b) = 100 Amps, beam energy of 1--1.5 MeV (gamma =3-4), and a Gaussian beam and channel of radii r(sub b) = r(sub c) = 1.5 cm. The N+1 ionization scheme is used to ionize atomic oxygen in the upper atmosphere. This scheme utilizes 130 nm light plus three IR lasers to excite and then ionize atomic oxygen. The limiting factor for the channel strength is the energy of the 130 nm laser, which is assumed to be 1.6 mJ for BOLT. At a fixed laser energy and altitude (fixing the density of atomic oxygen), the range can be varied by adjusting the laser tuning, resulting in a neutralization fraction axial profile of the form: f(z) = f(sub 0) e(exp minus z)/R, where R is the range. In this paper we consider the propagation of the BOLT beam and calculate the range of the electron beam taking into account the fact that the erosion rates (magnetic and inductive) vary with beam length as the beam and channel dynamically respond to sausage and hose instabilities.
Rivest-Hénault, David; Dowson, Nicholas; Greer, Peter B; Fripp, Jurgen; Dowling, Jason A
2015-07-01
CT-MR registration is a critical component of many radiation oncology protocols. In prostate external beam radiation therapy, it allows the propagation of MR-derived contours to reference CT images at the planning stage, and it enables dose mapping during dosimetry studies. The use of carefully registered CT-MR atlases allows the estimation of patient specific electron density maps from MRI scans, enabling MRI-alone radiation therapy planning and treatment adaptation. In all cases, the precision and accuracy achieved by registration influences the quality of the entire process. Most current registration algorithms do not robustly generalize and lack inverse-consistency, increasing the risk of human error and acting as a source of bias in studies where information is propagated in a particular direction, e.g. CT to MR or vice versa. In MRI-based treatment planning where both CT and MR scans serve as spatial references, inverse-consistency is critical, if under-acknowledged. A robust, inverse-consistent, rigid/affine registration algorithm that is well suited to CT-MR alignment in prostate radiation therapy is presented. The presented method is based on a robust block-matching optimization process that utilises a half-way space definition to maintain inverse-consistency. Inverse-consistency substantially reduces the influence of the order of input images, simplifying analysis, and increasing robustness. An open source implementation is available online at http://aehrc.github.io/Mirorr/. Experimental results on a challenging 35 CT-MR pelvis dataset demonstrate that the proposed method is more accurate than other popular registration packages and is at least as accurate as the state of the art, while being more robust and having an order of magnitude higher inverse-consistency than competing approaches. The presented results demonstrate that the proposed registration algorithm is readily applicable to prostate radiation therapy planning. Copyright © 2015. Published by
Energy Technology Data Exchange (ETDEWEB)
Canneviere, K.
2003-12-15
This work is devoted to the study of the propagation and the structure of two-phases turbulent flames. To this end, Direct Numerical Simulations (DNS) are used. First, numerical systems for two-phases flow simulations is presented along with a specific chemical model. Then, a study of laminar spray flames is carried out. An analytical study related to the dynamics of evaporation of droplets is first proposed where the influence on the equivalence ratio of the ratio between the heating delay of the droplet and the evaporation delay is detailed. The simulation of a propagating flame through a cloud of droplets is carried out and a pulsating behavior is highlighted. A study of these flames according to the topology of liquid fuel enabled us to characterize a double flame structure composed of a premixed flame and a diffusion flame. Our last study is devoted to spray turbulent flames. Two-phase combustion of turbulent jets has been simulated. By varying the spray injection parameters (density, equivalence ratio), a database has been generated. This database allowed us to describe local and global flame regimes appearing in the combustion of sprays. They have been categorized in four main structures: open and closed external regime, group combustion and mixed combustion. Eventually, a combustion diagram has been developed. It involves the spray vaporization time, the mean inter-space between droplets or group of droplets and eventually the injected equivalence ratio. (author)
Energy Technology Data Exchange (ETDEWEB)
Shioi, Masahiko, E-mail: shioi.masahiko@jp.panasonic.com [Device Solutions Center, Panasonic Corporation, 3-4, Hikaridai, Seika-cho, Soraku-gun, Kyoto 619-0237 (Japan); Department of Electric and Electronic Engineering, Graduate School of Engineering, Kobe University, Rokkodai, Nada, Kobe 657-8501 (Japan); Jans, Hilde [Interuniversity Microelectronics Center VZW., Kapeldreef 75, 3001 Leuven (Belgium); Lodewijks, Kristof [Interuniversity Microelectronics Center VZW., Kapeldreef 75, 3001 Leuven (Belgium); Department of Electrical Engineering, Katholieke Universiteit Leuven, Celestijnenlaan 200 D, B-3001 Leuven (Belgium); Van Dorpe, Pol; Lagae, Liesbet [Interuniversity Microelectronics Center VZW., Kapeldreef 75, 3001 Leuven (Belgium); Department of Physics, Katholieke Universiteit Leuven, Celestijnenlaan 200 D, B-3001 Leuven (Belgium); Kawamura, Tatsuro [Device Solutions Center, Panasonic Corporation, 3-4, Hikaridai, Seika-cho, Soraku-gun, Kyoto 619-0237 (Japan)
2014-06-16
With a view to biomedical and environmental applications, we investigate the plasmonic properties of a rectangular gold nanodisk array in water to boost surface enhanced Raman scattering (SERS) effects. To control the resonance wavelengths of the surface plasmon polariton and the localized surface plasmon, their dependence on the array period and diameter in water is studied in detail using a finite difference time domain method. A good agreement is obtained between calculated resonant wavelengths and those of gold nanodisk arrays fabricated using electron beam lithography. For the optimized structure, a SERS enhancement factor of 7.8 × 10{sup 7} is achieved in water experimentally.
The role of CH/π interactions in the high affinity binding of streptavidin and biotin.
Ozawa, Motoyasu; Ozawa, Tomonaga; Nishio, Motohiro; Ueda, Kazuyoshi
2017-08-01
The streptavidin-biotin complex has an extraordinarily high affinity (Ka: 10 15 mol -1 ) and contains one of the strongest non-covalent interactions known. This strong interaction is widely used in biological tools, including for affinity tags, detection, and immobilization of proteins. Although hydrogen bond networks and hydrophobic interactions have been proposed to explain this high affinity, the reasons for it remain poorly understood. Inspired by the deceased affinity of biotin observed for point mutations of streptavidin at tryptophan residues, we hypothesized that a CH/π interaction may also contribute to the strong interaction between streptavidin and biotin. CH/π interactions were explored and analyzed at the biotin-binding site and at the interface of the subunits by the fragment molecular orbital method (FMO) and extended applications: PIEDA and FMO4. The results show that CH/π interactions are involved in the high affinity for biotin at the binding site of streptavidin. We further suggest that the involvement of CH/π interactions at the subunit interfaces and an extended CH/π network play more critical roles in determining the high affinity, rather than involvement at the binding site. Copyright © 2017 Elsevier Inc. All rights reserved.
NASA Lunar Base Wireless System Propagation Analysis
Hwu, Shian U.; Upanavage, Matthew; Sham, Catherine C.
2007-01-01
There have been many radio wave propagation studies using both experimental and theoretical techniques over the recent years. However, most of studies have been in support of commercial cellular phone wireless applications. The signal frequencies are mostly at the commercial cellular and Personal Communications Service bands. The antenna configurations are mostly one on a high tower and one near the ground to simulate communications between a cellular base station and a mobile unit. There are great interests in wireless communication and sensor systems for NASA lunar missions because of the emerging importance of establishing permanent lunar human exploration bases. Because of the specific lunar terrain geometries and RF frequencies of interest to the NASA missions, much of the published literature for the commercial cellular and PCS bands of 900 and 1800 MHz may not be directly applicable to the lunar base wireless system and environment. There are various communication and sensor configurations required to support all elements of a lunar base. For example, the communications between astronauts, between astronauts and the lunar vehicles, between lunar vehicles and satellites on the lunar orbits. There are also various wireless sensor systems among scientific, experimental sensors and data collection ground stations. This presentation illustrates the propagation analysis of the lunar wireless communication and sensor systems taking into account the three dimensional terrain multipath effects. It is observed that the propagation characteristics are significantly affected by the presence of the lunar terrain. The obtained results indicate the lunar surface material, terrain geometry and antenna location are the important factors affecting the propagation characteristics of the lunar wireless systems. The path loss can be much more severe than the free space propagation and is greatly affected by the antenna height, surface material and operating frequency. The
Propagators and path integrals
Energy Technology Data Exchange (ETDEWEB)
Holten, J.W. van
1995-08-22
Path-integral expressions for one-particle propagators in scalar and fermionic field theories are derived, for arbitrary mass. This establishes a direct connection between field theory and specific classical point-particle models. The role of world-line reparametrization invariance of the classical action and the implementation of the corresponding BRST-symmetry in the quantum theory are discussed. The presence of classical world-line supersymmetry is shown to lead to an unwanted doubling of states for massive spin-1/2 particles. The origin of this phenomenon is traced to a `hidden` topological fermionic excitation. A different formulation of the pseudo-classical mechanics using a bosonic representation of {gamma}{sub 5} is shown to remove these extra states at the expense of losing manifest supersymmetry. (orig.).
Curvilinear crack layer propagation
Chudnovsky, Alexander; Chaoui, Kamel; Moet, Abdelsamie
1987-01-01
An account is given of an experiment designed to allow observation of the effect of damage orientation on the direction of crack growth in the case of crack layer propagation, using polystyrene as the model material. The direction of crack advance under a given loading condition is noted to be determined by a competition between the tendency of the crack to maintain its current direction and the tendency to follow the orientation of the crazes at its tip. The orientation of the crazes is, on the other hand, determined by the stress field due to the interaction of the crack, the crazes, and the hole. The changes in craze rotation relative to the crack define the active zone rotation.
Atomistics of crack propagation
International Nuclear Information System (INIS)
Sieradzki, K.; Dienes, G.J.; Paskin, A.; Massoumzadeh, B.
1988-01-01
The molecular dynamic technique is used to investigate static and dynamic aspects of crack extension. The material chosen for this study was the 2D triangular solid with atoms interacting via the Johnson potential. The 2D Johnson solid was chosen for this study since a sharp crack in this material remains stable against dislocation emission up to the critical Griffith load. This behavior allows for a meaningful comparison between the simulation results and continuum energy theorems for crack extension by appropriately defining an effective modulus which accounts for sample size effects and the non-linear elastic behavior of the Johnson solid. Simulation results are presented for the stress fields of moving cracks and these dynamic results are discussed in terms of the dynamic crack propagation theories, of Mott, Eshelby, and Freund
Broadband unidirectional ultrasound propagation
Sinha, Dipen N.; Pantea, Cristian
2017-12-12
A passive, linear arrangement of a sonic crystal-based apparatus and method including a 1D sonic crystal, a nonlinear medium, and an acoustic low-pass filter, for permitting unidirectional broadband ultrasound propagation as a collimated beam for underwater, air or other fluid communication, are described. The signal to be transmitted is first used to modulate a high-frequency ultrasonic carrier wave which is directed into the sonic crystal side of the apparatus. The apparatus processes the modulated signal, whereby the original low-frequency signal exits the apparatus as a collimated beam on the side of the apparatus opposite the sonic crystal. The sonic crystal provides a bandpass acoustic filter through which the modulated high-frequency ultrasonic signal passes, and the nonlinear medium demodulates the modulated signal and recovers the low-frequency sound beam. The low-pass filter removes remaining high-frequency components, and contributes to the unidirectional property of the apparatus.
Propagation into an unstable state
International Nuclear Information System (INIS)
Dee, G.
1985-01-01
We describe propagating front solutions of the equations of motion of pattern-forming systems. We make a number of conjectures concerning the properties of such fronts in connection with pattern selection in these systems. We describe a calculation which can be used to calculate the velocity and state selected by certain types of propagating fronts. We investigate the propagating front solutions of the amplitude equation which provides a valid dynamical description of many pattern-forming systems near onset
Feynman propagator in curved space-time
International Nuclear Information System (INIS)
Candelas, P.; Raine, D.J.
1977-01-01
The Wick rotation is generalized in a covariant manner so as to apply to curved manifolds in a way that is independent of the analytic properties of the manifold. This enables us to show that various methods for defining a Feynman propagator to be found in the literature are equivalent where they are applicable. We are also able to discuss the relation between certain regularization methods that have been employed
Staircase Models from Affine Toda Field Theory
Dorey, P; Dorey, Patrick; Ravanini, Francesco
1993-01-01
We propose a class of purely elastic scattering theories generalising the staircase model of Al. B. Zamolodchikov, based on the affine Toda field theories for simply-laced Lie algebras g=A,D,E at suitable complex values of their coupling constants. Considering their Thermodynamic Bethe Ansatz equations, we give analytic arguments in support of a conjectured renormalisation group flow visiting the neighbourhood of each W_g minimal model in turn.
Calculation of protein-ligand binding affinities.
Gilson, Michael K; Zhou, Huan-Xiang
2007-01-01
Accurate methods of computing the affinity of a small molecule with a protein are needed to speed the discovery of new medications and biological probes. This paper reviews physics-based models of binding, beginning with a summary of the changes in potential energy, solvation energy, and configurational entropy that influence affinity, and a theoretical overview to frame the discussion of specific computational approaches. Important advances are reported in modeling protein-ligand energetics, such as the incorporation of electronic polarization and the use of quantum mechanical methods. Recent calculations suggest that changes in configurational entropy strongly oppose binding and must be included if accurate affinities are to be obtained. The linear interaction energy (LIE) and molecular mechanics Poisson-Boltzmann surface area (MM-PBSA) methods are analyzed, as are free energy pathway methods, which show promise and may be ready for more extensive testing. Ultimately, major improvements in modeling accuracy will likely require advances on multiple fronts, as well as continued validation against experiment.
2D Affine and Projective Shape Analysis.
Bryner, Darshan; Klassen, Eric; Huiling Le; Srivastava, Anuj
2014-05-01
Current techniques for shape analysis tend to seek invariance to similarity transformations (rotation, translation, and scale), but certain imaging situations require invariance to larger groups, such as affine or projective groups. Here we present a general Riemannian framework for shape analysis of planar objects where metrics and related quantities are invariant to affine and projective groups. Highlighting two possibilities for representing object boundaries-ordered points (or landmarks) and parameterized curves-we study different combinations of these representations (points and curves) and transformations (affine and projective). Specifically, we provide solutions to three out of four situations and develop algorithms for computing geodesics and intrinsic sample statistics, leading up to Gaussian-type statistical models, and classifying test shapes using such models learned from training data. In the case of parameterized curves, we also achieve the desired goal of invariance to re-parameterizations. The geodesics are constructed by particularizing the path-straightening algorithm to geometries of current manifolds and are used, in turn, to compute shape statistics and Gaussian-type shape models. We demonstrate these ideas using a number of examples from shape and activity recognition.
Excited state electron affinity calculations for aluminum
Hussein, Adnan Yousif
2017-08-01
Excited states of negative aluminum ion are reviewed, and calculations of electron affinities of the states (3s^23p^2)^1D and (3s3p^3){^5}{S}° relative to the (3s^23p)^2P° and (3s3p^2)^4P respectively of the neutral aluminum atom are reported in the framework of nonrelativistic configuration interaction (CI) method. A priori selected CI (SCI) with truncation energy error (Bunge in J Chem Phys 125:014107, 2006) and CI by parts (Bunge and Carbó-Dorca in J Chem Phys 125:014108, 2006) are used to approximate the valence nonrelativistic energy. Systematic studies of convergence of electron affinity with respect to the CI excitation level are reported. The calculated value of the electron affinity for ^1D state is 78.675(3) meV. Detailed Calculations on the ^5S°c state reveals that is 1216.8166(3) meV below the ^4P state.
Affinity functions for modeling glass dissolution rates
Energy Technology Data Exchange (ETDEWEB)
Bourcier, W.L. [Lawrence Livermore National Lab., CA (United States)
1997-07-01
Glass dissolution rates decrease dramatically as glass approach ''saturation'' with respect to the leachate solution. Most repository sites are chosen where water fluxes are minimal, and therefore the waste glass is most likely to dissolve under conditions close to ''saturation''. The key term in the rate expression used to predict glass dissolution rates close to ''saturation'' is the affinity term, which accounts for saturation effects on dissolution rates. Interpretations of recent experimental data on the dissolution behaviour of silicate glasses and silicate minerals indicate the following: 1) simple affinity control does not explain the observed dissolution rate for silicate minerals or glasses; 2) dissolution rates can be significantly modified by dissolved cations even under conditions far from saturation where the affinity term is near unity; 3) the effects of dissolved species such as Al and Si on the dissolution rate vary with pH, temperature, and saturation state; and 4) as temperature is increased, the effect of both pH and temperature on glass and mineral dissolution rates decrease, which strongly suggests a switch in rate control from surface reaction-based to diffusion control. Borosilicate glass dissolution models need to be upgraded to account for these recent experimental observations. (A.C.)
Wave Propagation in Jointed Geologic Media
Energy Technology Data Exchange (ETDEWEB)
Antoun, T
2009-12-17
Predictive modeling capabilities for wave propagation in a jointed geologic media remain a modern day scientific frontier. In part this is due to a lack of comprehensive understanding of the complex physical processes associated with the transient response of geologic material, and in part it is due to numerical challenges that prohibit accurate representation of the heterogeneities that influence the material response. Constitutive models whose properties are determined from laboratory experiments on intact samples have been shown to over-predict the free field environment in large scale field experiments. Current methodologies for deriving in situ properties from laboratory measured properties are based on empirical equations derived for static geomechanical applications involving loads of lower intensity and much longer durations than those encountered in applications of interest involving wave propagation. These methodologies are not validated for dynamic applications, and they do not account for anisotropic behavior stemming from direcitonal effects associated with the orientation of joint sets in realistic geologies. Recent advances in modeling capabilities coupled with modern high performance computing platforms enable physics-based simulations of jointed geologic media with unprecedented details, offering a prospect for significant advances in the state of the art. This report provides a brief overview of these modern computational approaches, discusses their advantages and limitations, and attempts to formulate an integrated framework leading to the development of predictive modeling capabilities for wave propagation in jointed and fractured geologic materials.
Miyamoto, K; Itoh, Y; Tsuda, F; Matsui, T; Tanaka, T; Miyamoto, H; Naitoh, S; Imai, M; Usuda, S; Nakamura, T
1986-05-22
Human primary hepatocellular carcinoma (PLC/342), carried by nude mice, produces hepatitis B core particles as well as hepatitis B surface antigen particles. Core particles purified form PLC/342 tumors displayed epitopes of hepatitis B core antigen (HBcAg) but not epitopes of hepatitis B e antigen (HBeAg) on their surface, unlike core particles prepared from Dane particles, derived from plasma of asymptomatic carriers, that expressed epitopes of both HBcAg and HBeAg. Core particles obtained from PLC/342 tumors were applied to the determination of antibody to HBcAg (anti-HBc) by passive hemagglutination. The assay detected anti-HBc not only in individuals with persistent infection with hepatitis B virus and in those who had recovered from transient infection, but also in patients with acute type B hepatitis, indicating that it can detect anti-HBc of either IgG or IgM class. A liberal availability of core particles from tumors carried by nude mice, taken together with an easy applicability of the method, would make the passive hemagglutination for anti-HBc a valuable tool in clinical and epidemiological studies, especially in places where sophisticated methods are not feasible.
Directory of Open Access Journals (Sweden)
Johan Nilvebrant
Full Text Available The epidermal growth factor receptor 2, ERBB2, is a well-validated target for cancer diagnostics and therapy. Recent studies suggest that the over-expression of this receptor in various cancers might also be exploited for antibody-based payload delivery, e.g. antibody drug conjugates. In such strategies, the full-length antibody format is probably not required for therapeutic effect and smaller tumor-specific affinity proteins might be an alternative. However, small proteins and peptides generally suffer from fast excretion through the kidneys, and thereby require frequent administration in order to maintain a therapeutic concentration. In an attempt aimed at combining ERBB2-targeting with antibody-like pharmacokinetic properties in a small protein format, we have engineered bispecific ERBB2-binding proteins that are based on a small albumin-binding domain. Phage display selection against ERBB2 was used for identification of a lead candidate, followed by affinity maturation using second-generation libraries. Cell surface display and flow-cytometric sorting allowed stringent selection of top candidates from pools pre-enriched by phage display. Several affinity-matured molecules were shown to bind human ERBB2 with sub-nanomolar affinity while retaining the interaction with human serum albumin. Moreover, parallel selections against ERBB2 in the presence of human serum albumin identified several amino acid substitutions that dramatically modulate the albumin affinity, which could provide a convenient means to control the pharmacokinetics. The new affinity proteins competed for ERBB2-binding with the monoclonal antibody trastuzumab and recognized the native receptor on a human cancer cell line. Hence, high affinity tumor targeting and tunable albumin binding were combined in one small adaptable protein.
The parabolic equation method for outdoor sound propagation
DEFF Research Database (Denmark)
Arranz, Marta Galindo
The parabolic equation method is a versatile tool for outdoor sound propagation. The present study has focused on the Cranck-Nicolson type Parabolic Equation method (CNPE). Three different applications of the CNPE method have been investigated. The first two applications study variations of the g......The parabolic equation method is a versatile tool for outdoor sound propagation. The present study has focused on the Cranck-Nicolson type Parabolic Equation method (CNPE). Three different applications of the CNPE method have been investigated. The first two applications study variations...
Krainer, Georg; Keller, Sandro
2015-04-01
Isothermal titration calorimetry (ITC) is the gold standard for dissecting the thermodynamics of a biomolecular binding process within a single experiment. However, reliable determination of the dissociation constant (KD) from a single titration is typically limited to the range 100 μM>KD>1 nM. Interactions characterized by a lower KD can be assessed indirectly by so-called competition or displacement assays, provided that a suitable competitive ligand is available whose KD falls within the directly accessible window. However, this protocol is limited by the fact that it necessitates at least two titrations to characterize one high-affinity inhibitor, resulting in considerable consumption of both sample material and time. Here, we introduce a fast and efficient ITC displacement assay that allows for the simultaneous characterization of both a high-affinity ligand and a moderate-affinity ligand competing for the same binding site on a receptor within a single experiment. The protocol is based on a titration of the high-affinity ligand into a solution containing the moderate-affinity ligand bound to the receptor present in excess. The resulting biphasic binding isotherm enables accurate and precise determination of KD values and binding enthalpies (ΔH) of both ligands. We discuss the theoretical background underlying the approach, demonstrate its practical application to metal ion chelation, explore its potential and limitations with the aid of simulations and statistical analyses, and elaborate on potential applications to protein-inhibitor interactions. Copyright © 2014 Elsevier Inc. All rights reserved.
Sheshadri, A.; Plumb, R. A.
2017-12-01
The leading "annular mode", defined as the dominant EOF of surface pressure or of zonal mean zonal wind variability, appears as a dipolar structure straddling the mean midlatitude jet and thus seems to describe north-south wobbling of the jet latitude. However, extratropical zonal wind anomalies frequently tend to migrate poleward. This behavior can be described by the first two EOFs, the first (AM1) being the dipolar structure, and the second (AM2) having a tripolar structure centered on the mean jet. Taken in isolation, AM1 thus describes a north-south wobbling of the jet position, while AM2 describes a strengthening and narrowing of the jet. However, despite the fact that they are spatially orthogonal, and their corresponding time series temporally orthogonal, AM1 and AM2 are not independent, but show significant lag-correlations which reveal the propagation. The EOFs are not modes of the underlying dynamical system governing the zonal flow evolution. The true modes can be estimated using principal oscillation pattern (POP) analysis. In the troposphere, the leading POPs manifest themselves as a pair of complex conjugate structures with conjugate eigenvalues thus, in reality, constituting a single, complex, mode that describes propagating anomalies. Even though the principal components associated with the two leading EOFs decay at different rates, each decays faster than the true mode. These facts have implications for eddy feedback and the susceptibility of the mode to external perturbations. If one interprets the annular modes as the modes of the system, then simple theory predicts that the response to steady forcing will usually be dominated by AM1 (with the longest time scale). However, such arguments should really be applied to the true modes. Experiments with a simplified GCM show that climate response to perturbations do not necessarily have AM1 structures. Implications of these results for stratosphere-troposphere interactions are explored. The POP
Efficient Geometric Sound Propagation Using Visibility Culling
Chandak, Anish
2011-07-01
Simulating propagation of sound can improve the sense of realism in interactive applications such as video games and can lead to better designs in engineering applications such as architectural acoustics. In this thesis, we present geometric sound propagation techniques which are faster than prior methods and map well to upcoming parallel multi-core CPUs. We model specular reflections by using the image-source method and model finite-edge diffraction by using the well-known Biot-Tolstoy-Medwin (BTM) model. We accelerate the computation of specular reflections by applying novel visibility algorithms, FastV and AD-Frustum, which compute visibility from a point. We accelerate finite-edge diffraction modeling by applying a novel visibility algorithm which computes visibility from a region. Our visibility algorithms are based on frustum tracing and exploit recent advances in fast ray-hierarchy intersections, data-parallel computations, and scalable, multi-core algorithms. The AD-Frustum algorithm adapts its computation to the scene complexity and allows small errors in computing specular reflection paths for higher computational efficiency. FastV and our visibility algorithm from a region are general, object-space, conservative visibility algorithms that together significantly reduce the number of image sources compared to other techniques while preserving the same accuracy. Our geometric propagation algorithms are an order of magnitude faster than prior approaches for modeling specular reflections and two to ten times faster for modeling finite-edge diffraction. Our algorithms are interactive, scale almost linearly on multi-core CPUs, and can handle large, complex, and dynamic scenes. We also compare the accuracy of our sound propagation algorithms with other methods. Once sound propagation is performed, it is desirable to listen to the propagated sound in interactive and engineering applications. We can generate smooth, artifact-free output audio signals by applying
Affine fractal functions as bases of continuous funtions | Navascues ...
African Journals Online (AJOL)
The objective of the present paper is the study of affine transformations of the plane, which provide self-affine curves as attractors. The properties of these curves depend decisively of the coefficients of the system of affinities involved. The corresponding functions are continuous on a compact interval. If the scale factors are ...
Propagation of Ion Acoustic Perturbations
DEFF Research Database (Denmark)
Pécseli, Hans
1975-01-01
Equations describing the propagation of ion acoustic perturbations are considered, using the assumption that the electrons are Boltzman distributed and isothermal at all times. Quasi-neutrality is also considered.......Equations describing the propagation of ion acoustic perturbations are considered, using the assumption that the electrons are Boltzman distributed and isothermal at all times. Quasi-neutrality is also considered....
Expression and affinity purification of recombinant proteins from plants
Desai, Urvee A.; Sur, Gargi; Daunert, Sylvia; Babbitt, Ruth; Li, Qingshun
2002-01-01
With recent advances in plant biotechnology, transgenic plants have been targeted as an inexpensive means for the mass production of proteins for biopharmaceutical and industrial uses. However, the current plant purification techniques lack a generally applicable, economic, large-scale strategy. In this study, we demonstrate the purification of a model protein, beta-glucuronidase (GUS), by employing the protein calmodulin (CaM) as an affinity tag. In the proposed system, CaM is fused to GUS. In the presence of calcium, the calmodulin fusion protein binds specifically to a phenothiazine-modified surface of an affinity column. When calcium is removed with a complexing agent, e.g., EDTA, calmodulin undergoes a conformational change allowing the dissociation of the calmodulin-phenothiazine complex and, therefore, permitting the elution of the GUS-CaM fusion protein. The advantages of this approach are the fast, efficient, and economical isolation of the target protein under mild elution conditions, thus preserving the activity of the target protein. Two types of transformation methods were used in this study, namely, the Agrobacterium-mediated system and the viral-vector-mediated transformation system. Copyright 2002 Elsevier Science (USA).
Propagation Engineering in Wireless Communications
Ghasemi, Abdollah; Ghasemi, Farshid
2012-01-01
Wireless communications has seen explosive growth in recent decades, in a realm that is both broad and rapidly expanding to include satellite services, navigational aids, remote sensing, telemetering, audio and video broadcasting, high-speed data communications, mobile radio systems and much more. Propagation Engineering in Wireless Communications deals with the basic principles of radiowaves propagation for frequency bands used in radio-communications, offering descriptions of new achievements and newly developed propagation models. The book bridges the gap between theoretical calculations and approaches, and applied procedures needed for advanced radio links design. The primary objective of this two-volume set is to demonstrate the fundamentals, and to introduce propagation phenomena and mechanisms that engineers are likely to encounter in the design and evaluation of radio links of a given type and operating frequency. Volume one covers basic principles, along with tropospheric and ionospheric propagation,...
Transionospheric propagation predictions
Klobucher, J. A.; Basu, S.; Basu, S.; Bernhardt, P. A.; Davies, K.; Donatelli, D. E.; Fremouw, E. J.; Goodman, J. M.; Hartmann, G. K.; Leitinger, R.
1979-01-01
The current status and future prospects of the capability to make transionospheric propagation predictions are addressed, highlighting the effects of the ionized media, which dominate for frequencies below 1 to 3 GHz, depending upon the state of the ionosphere and the elevation angle through the Earth-space path. The primary concerns are the predictions of time delay of signal modulation (group path delay) and of radio wave scintillation. Progress in these areas is strongly tied to knowledge of variable structures in the ionosphere ranging from the large scale (thousands of kilometers in horizontal extent) to the fine scale (kilometer size). Ionospheric variability and the relative importance of various mechanisms responsible for the time histories observed in total electron content (TEC), proportional to signal group delay, and in irregularity formation are discussed in terms of capability to make both short and long term predictions. The data base upon which predictions are made is examined for its adequacy, and the prospects for prediction improvements by more theoretical studies as well as by increasing the available statistical data base are examined.
Dressing the nucleon propagator
International Nuclear Information System (INIS)
Fishman, S.; Gersten, A.
1976-01-01
The nucleon propagator in the ''nested bubbles'' approximation is analyzed. The approximation is built from the minimal set of diagrams which is needed to maintain the unitarity condition under two-pion production threshold in the two-nucleon Bethe--Salpeter equation. Recursive formulas for subsets of ''nested bubbles'' diagrams calculated in the framework of the pseudoscalar interaction are obtained by the use of dispersion relations. We prove that the sum of all the ''nested bubbles'' diverges. Moreover, the successive iterations are plagued with ghost poles. We prove that the first approximation--which is the so-called chain approximation--has ghost poles for any nonvanishing coupling constant. In an earlier paper we have shown that ghost poles lead to ghost cuts. These cuts are present in the ''nested bubbles.'' Ghost elimination procedures are discussed. Modifications of the ''nested bubbles'' approximation are introduced in order to obtain convergence and in order to eliminate the ghost poles and ghost cuts. In a similar way as in the Lee model, cutoff functions are introduced in order to eliminate the ghost poles. The necessary and sufficient conditions for the absence of ghost poles are formulated and analyzed. The spectral functions of the modified ''nested bubbles'' are analyzed and computed. Finally, we present a theorem, similar in its form to Levinson's theorem in scattering theory, which enables one to compute in a simple way the number of ghost poles
A simple three dimensional wide-angle beam propagation method
Ma, Changbao; van Keuren, Edward
2006-05-01
The development of three dimensional (3-D) waveguide structures for chip scale planar lightwave circuits (PLCs) is hampered by the lack of effective 3-D wide-angle (WA) beam propagation methods (BPMs). We present a simple 3-D wide-angle beam propagation method (WA-BPM) using Hoekstra’s scheme along with a new 3-D wave equation splitting method. The applicability, accuracy and effectiveness of our method are demonstrated by applying it to simulations of wide-angle beam propagation and comparing them with analytical solutions.
Affine Fullerene C60 in a GS-Quasigroup
Directory of Open Access Journals (Sweden)
Vladimir Volenec
2014-01-01
Full Text Available It will be shown that the affine fullerene C60, which is defined as an affine image of buckminsterfullerene C60, can be obtained only by means of the golden section. The concept of the affine fullerene C60 will be constructed in a general GS-quasigroup using the statements about the relationships between affine regular pentagons and affine regular hexagons. The geometrical interpretation of all discovered relations in a general GS-quasigroup will be given in the GS-quasigroup C(1/2(1+5.
On the structure of self-affine convex bodies
Energy Technology Data Exchange (ETDEWEB)
Voynov, A S [M. V. Lomonosov Moscow State University, Faculty of Mechanics and Mathematics, Moscow (Russian Federation)
2013-08-31
We study the structure of convex bodies in R{sup d} that can be represented as a union of their affine images with no common interior points. Such bodies are called self-affine. Vallet's conjecture on the structure of self-affine bodies was proved for d = 2 by Richter in 2011. In the present paper we disprove the conjecture for all d≥3 and derive a detailed description of self-affine bodies in R{sup 3}. Also we consider the relation between properties of self-affine bodies and functional equations with a contraction of an argument. Bibliography: 10 titles.
Design Against Propagating Shear Failure in Pipelines
Leis, B. N.; Gray, J. Malcolm
Propagating shear failure can occur in gas and certain hazardous liquid transmission pipelines, potentially leading to a large long-burning fire and/or widespread pollution, depending on the transported product. Such consequences require that the design of the pipeline and specification of the steel effectively preclude the chance of propagating shear failure. Because the phenomenology of such failures is complex, design against such occurrences historically has relied on full-scale demonstration experiments coupled with empirically calibrated analytical models. However, as economic drivers have pushed toward larger diameter higher pressure pipelines made of tough higher-strength grades, the design basis to ensure arrest has been severely compromised. Accordingly, for applications where the design basis becomes less certain, as has occurred increasing as steel grade and toughness has increased, it has become necessary to place greater reliance on the use and role of full-scale testing.
M2 qualify laser beam propagation
International Nuclear Information System (INIS)
Abdelhalim, Bencheikh; Mohamed, Bouafia
2010-01-01
One of the most important properties of a laser resonator is the highly collimated or spatially coherent nature of the laser output beam. Laser beam diameter and quality factor M 2 are significant parameters in a wide range of laser applications. This is because the spatial beam quality determines how closely the beam can be focused or how well the beam propagates over long distances without significant dispersion. In the present paper we have used three different methods to qualify the spatial structure of a laser beam propagating in free space, the results are obtained and discussed, and we have found that the Wigner distribution function is a powerful tool which allows a global characterization of any kind of beam
Topology optimization of vibration and wave propagation problems
DEFF Research Database (Denmark)
Jensen, Jakob Søndergaard
2007-01-01
The method of topology optimization is a versatile method to determine optimal material layouts in mechanical structures. The method relies on, in principle, unlimited design freedom that can be used to design materials, structures and devices with significantly improved performance and sometimes...... novel functionality. This paper addresses basic issues in simulation and topology design of vibration and wave propagation problems. Steady-state and transient wave propagation problems are addressed and application examples for both cases are presented....
Yoshimi, T; Kawabata, S; Taira, S; Okuno, A; Mikawa, R; Murayama, S; Tanaka, K; Takikawa, O
2015-11-07
A novel screening system, using affinity imaging mass spectrometry (AIMS), has been developed to identify protein aggregates or organ structures in unfixed human tissue. Frozen tissue sections are positioned on small (millimetre-scale) stainless steel chips and incubated with an extensive library of small molecules. Candidate molecules showing specific affinity for the tissue section are identified by imaging mass spectrometry (IMS). As an example application, we screened over a thousand compounds against Alzheimer's disease (AD) brain tissue and identified several compounds with high affinity for AD brain sections containing tau deposits compared to age-matched controls. It should also be possible to use AIMS to isolate chemical compounds with affinity for tissue structures or components that have been extensively modified by events such as oxidation, phosphorylation, acetylation, aggregation, racemization or truncation, for example, due to aging. It may also be applicable to biomarker screening programs.
Laser beam propagation generation and propagation of customized light
Forbes, Andrew
2014-01-01
""The text is easy to read and is accompanied by beautiful illustrations. It is an excellent book for anyone working in laser beam propagation and an asset for any library.""-Optics & Photonics News, July 2014
Computer modeling of inelastic wave propagation in porous rock
International Nuclear Information System (INIS)
Cheney, J.A.; Schatz, J.F.; Snell, C.
1979-01-01
Computer modeling of wave propagation in porous rock has several important applications. Among them are prediction of fragmentation and permeability changes to be caused by chemical explosions used for in situ resource recovery, and the understanding of nuclear explosion effects such as seismic wave generation, containment, and site hardness. Of interest in all these applications are the distance from the source to which inelastic effects persist and the amount of porosity change within the inelastic region. In order to study phenomena related to these applications, the Cam Clay family of models developed at Cambridge University was used to develop a similar model that is applicable to wave propagation in porous rock. That model was incorporated into a finite-difference wave propagation computer code SOC. 10 figures, 1 table
High affinity hemoglobin and Parkinson's disease.
Graham, Jeffrey; Hobson, Douglas; Ponnampalam, Arjuna
2014-12-01
Parkinson's disease (PD) is a neurodegenerative disorder characterized by the loss of dopaminergic neurons in the substantia nigra (SN) region of the midbrain. Oxidative damage in this region has been shown to play an important role in the pathogenesis of this disease. Human neurons have been discovered to contain hemoglobin, with an increased concentration seen in the neurons of the SN. High affinity hemoglobin is a clinical entity resulting from mutations that create a functional increase in the binding of hemoglobin to oxygen and an inability to efficiently unload it to tissues. This can result in a number of metabolic compensatory changes, including an elevation in circulating hemoglobin and an increase in the molecule 2,3-diphosphoglycerate (2,3-DPG). Population based studies have revealed that patients with PD have elevated hemoglobin as well as 2,3-DPG levels. Based on these observations, we hypothesize that the oxidative damage seen in PD is related to an underlying high affinity hemoglobin subtype. Copyright © 2014 Elsevier Ltd. All rights reserved.
Aspects of affine Toda field theory
International Nuclear Information System (INIS)
Braden, H.W.; Corrigan, E.; Dorey, P.E.; Sasaki, R.
1990-05-01
The report is devoted to properties of the affine Toda field theory, the intention being to highlight a selection of curious properties that should be explicable in terms of the underlying group theory but for which in most cases there are no explanation. The motivation for exploring the ideas contained in this report came principally from the recent work of Zamolodchikov concerning the two dimensional Ising model at critical temperature perturbed by a magnetic field. Hollowood and Mansfield pointed out that since Toda field theory is conformal the perturbation considered by Zamolodchikov might well be best regarded as a perturbation of a Toda field theory. This work made it seem plausible that the theory sought by Zamolodchikov was actually affine E 8 Toda field theory. However, this connection required an imaginary value of the coupling constant. Investigations here concerning exact S-matrices use a perturbative approach based on real coupling and the results differ in various ways from those thought to correspond to perturbed conformal field theory. A further motivation is to explore the connection between conformal and perturbed conformal field theories in other contexts using similar ideas. (N.K.)
From affine Hecke algebras to boundary symmetries
International Nuclear Information System (INIS)
Doikou, Anastasia
2005-01-01
Motivated by earlier works we employ appropriate realizations of the affine Hecke algebra and we recover previously known non-diagonal solutions of the reflection equation for the U q (gl n -bar ) case. The corresponding N site spin chain with open boundary conditions is then constructed and boundary non-local charges associated to the non-diagonal solutions of the reflection equation are derived, as coproduct realizations of the reflection algebra. With the help of linear intertwining relations involving the aforementioned solutions of the reflection equation, the symmetry of the open spin chain with the corresponding boundary conditions is exhibited, being essentially a remnant of the U q (gl n -bar ) algebra. More specifically, we show that representations of certain boundary non-local charges commute with the generators of the affine Hecke algebra and with the local Hamiltonian of the open spin chain for a particular choice of boundary conditions. Furthermore, we are able to show that the transfer matrix of the open spin chain commutes with a certain number of boundary non-local charges, depending on the choice of boundary conditions
The electron affinity of some radiotherapeutic agents used in cancer therapy
International Nuclear Information System (INIS)
Wold, E.; Kaalhus, O.; Johansen, E.S.; Ekse, A.T.
1980-01-01
In order to evaluate whether chemotherapeutic compounds applied in cancer treatment might interact with radiation as anoxic cell sensitizers, the electron-affinic properties of DTIC (5-(3,3-dimethyl-1-triazeno)imidazole-4 carboxamide) AIC 4(5)-aminoimidazole-5(4)-carboxamide, hydroxyurea, busulfan and cyclophosphamide were studied by pulse radiolysis. Reaction rates with hydrated electrons were determined for all these compounds. With the exception of DTIC, they all reacted much more slowly with electrons than do most electron-affinic sensitizers. One-electron reduction potentials were determined for DTIC, AIC and hydroxyurea. The values were all in the region for the onset of sensitization, with hydroxyurea as the most promising (E 7 1 = -0.552 V). For busulfan and cyclophosphamide no value could be determined, but these compounds are probably less electron-affinic than hydroxyurea. A possible application of chemotherapeutic agents as radiosensitizers is discussed. (author)
Study on the electromagnetic waves propagation characteristics in partially ionized plasma slabs
Directory of Open Access Journals (Sweden)
Zhi-Bin Wang
2016-05-01
Full Text Available Propagation characteristics of electromagnetic (EM waves in partially ionized plasma slabs are studied in this paper. Such features are significant to applications in plasma antennas, blackout of re-entry flying vehicles, wave energy injection to plasmas, and etc. We in this paper developed a theoretical model of EM wave propagation perpendicular to a plasma slab with a one-dimensional density inhomogeneity along propagation direction to investigate essential characteristics of EM wave propagation in nonuniform plasmas. Particularly, the EM wave propagation in sub-wavelength plasma slabs, where the geometric optics approximation fails, is studied and in comparison with thicker slabs where the geometric optics approximation applies. The influences of both plasma and collisional frequencies, as well as the width of the plasma slab, on the EM wave propagation characteristics are discussed. The results can help the further understanding of propagation behaviours of EM waves in nonuniform plasma, and applications of the interactions between EM waves and plasmas.
Affinity maturation of a portable Fab–RNA module for chaperone-assisted RNA crystallography
Koirala, Deepak; Shelke, Sandip A; Dupont, Marcel; Ruiz, Stormy; DasGupta, Saurja; Bailey, Lucas J; Benner, Steven A; Piccirilli, Joseph A
2018-01-01
Abstract Antibody fragments such as Fabs possess properties that can enhance protein and RNA crystallization and therefore can facilitate macromolecular structure determination. In particular, Fab BL3–6 binds to an AAACA RNA pentaloop closed by a GC pair with ∼100 nM affinity. The Fab and hairpin have served as a portable module for RNA crystallization. The potential for general application make it desirable to adjust the properties of this crystallization module in a manner that facilitates its use for RNA structure determination, such as ease of purification, surface entropy or binding affinity. In this work, we used both in vitro RNA selection and phage display selection to alter the epitope and paratope sides of the binding interface, respectively, for improved binding affinity. We identified a 5′-GNGACCC-3′ consensus motif in the RNA and S97N mutation in complimentarity determining region L3 of the Fab that independently impart about an order of magnitude improvement in affinity, resulting from new hydrogen bonding interactions. Using a model RNA, these modifications facilitated crystallization under a wider range of conditions and improved diffraction. The improved features of the Fab–RNA module may facilitate its use as an affinity tag for RNA purification and imaging and as a chaperone for RNA crystallography. PMID:29309709
Aguda, Adeleke H; Lavallee, Vincent; Cheng, Ping; Bott, Tina M; Meimetis, Labros G; Law, Simon; Nguyen, Nham T; Williams, David E; Kaleta, Jadwiga; Villanueva, Ivan; Davies, Julian; Andersen, Raymond J; Brayer, Gary D; Brömme, Dieter
2016-08-26
Natural products are an important source of novel drug scaffolds. The highly variable and unpredictable timelines associated with isolating novel compounds and elucidating their structures have led to the demise of exploring natural product extract libraries in drug discovery programs. Here we introduce affinity crystallography as a new methodology that significantly shortens the time of the hit to active structure cycle in bioactive natural product discovery research. This affinity crystallography approach is illustrated by using semipure fractions of an actinomycetes culture extract to isolate and identify a cathepsin K inhibitor and to compare the outcome with the traditional assay-guided purification/structural analysis approach. The traditional approach resulted in the identification of the known inhibitor antipain (1) and its new but lower potency dehydration product 2, while the affinity crystallography approach led to the identification of a new high-affinity inhibitor named lichostatinal (3). The structure and potency of lichostatinal (3) was verified by total synthesis and kinetic characterization. To the best of our knowledge, this is the first example of isolating and characterizing a potent enzyme inhibitor from a partially purified crude natural product extract using a protein crystallographic approach.
Visual attitude propagation for small satellites
Rawashdeh, Samir A.
As electronics become smaller and more capable, it has become possible to conduct meaningful and sophisticated satellite missions in a small form factor. However, the capability of small satellites and the range of possible applications are limited by the capabilities of several technologies, including attitude determination and control systems. This dissertation evaluates the use of image-based visual attitude propagation as a compliment or alternative to other attitude determination technologies that are suitable for miniature satellites. The concept lies in using miniature cameras to track image features across frames and extracting the underlying rotation. The problem of visual attitude propagation as a small satellite attitude determination system is addressed from several aspects: related work, algorithm design, hardware and performance evaluation, possible applications, and on-orbit experimentation. These areas of consideration reflect the organization of this dissertation. A "stellar gyroscope" is developed, which is a visual star-based attitude propagator that uses relative motion of stars in an imager's field of view to infer the attitude changes. The device generates spacecraft relative attitude estimates in three degrees of freedom. Algorithms to perform the star detection, correspondence, and attitude propagation are presented. The Random Sample Consensus (RANSAC) approach is applied to the correspondence problem to successfully pair stars across frames while mitigating falsepositive and false-negative star detections. This approach provides tolerance to the noise levels expected in using miniature optics and no baffling, and the noise caused by radiation dose on orbit. The hardware design and algorithms are validated using test images of the night sky. The application of the stellar gyroscope as part of a CubeSat attitude determination and control system is described. The stellar gyroscope is used to augment a MEMS gyroscope attitude propagation
Methodologies of Uncertainty Propagation Calculation
International Nuclear Information System (INIS)
Chojnacki, Eric
2002-01-01
After recalling the theoretical principle and the practical difficulties of the methodologies of uncertainty propagation calculation, the author discussed how to propagate input uncertainties. He said there were two kinds of input uncertainty: - variability: uncertainty due to heterogeneity, - lack of knowledge: uncertainty due to ignorance. It was therefore necessary to use two different propagation methods. He demonstrated this in a simple example which he generalised, treating the variability uncertainty by the probability theory and the lack of knowledge uncertainty by the fuzzy theory. He cautioned, however, against the systematic use of probability theory which may lead to unjustifiable and illegitimate precise answers. Mr Chojnacki's conclusions were that the importance of distinguishing variability and lack of knowledge increased as the problem was getting more and more complex in terms of number of parameters or time steps, and that it was necessary to develop uncertainty propagation methodologies combining probability theory and fuzzy theory
Propagation engineering in wireless communications
Ghasemi, Abdollah; Ghasemi, Farshid
2016-01-01
This book covers the basic principles for understanding radio wave propagation for common frequency bands used in radio-communications. This includes achievements and developments in propagation models for wireless communication. This book is intended to bridge the gap between the theoretical calculations and approaches to the applied procedures needed for radio links design in a proper manner. The authors emphasize propagation engineering by giving fundamental information and explain the use of basic principles together with technical achievements. This new edition includes additional information on radio wave propagation in guided media and technical issues for fiber optics cable networks with several examples and problems. This book also includes a solution manual - with 90 solved examples distributed throughout the chapters - and 158 problems including practical values and assumptions.
Wave propagation in electromagnetic media
Davis, Julian L
1990-01-01
This is the second work of a set of two volumes on the phenomena of wave propagation in nonreacting and reacting media. The first, entitled Wave Propagation in Solids and Fluids (published by Springer-Verlag in 1988), deals with wave phenomena in nonreacting media (solids and fluids). This book is concerned with wave propagation in reacting media-specifically, in electro magnetic materials. Since these volumes were designed to be relatively self contained, we have taken the liberty of adapting some of the pertinent material, especially in the theory of hyperbolic partial differential equations (concerned with electromagnetic wave propagation), variational methods, and Hamilton-Jacobi theory, to the phenomena of electromagnetic waves. The purpose of this volume is similar to that of the first, except that here we are dealing with electromagnetic waves. We attempt to present a clear and systematic account of the mathematical methods of wave phenomena in electromagnetic materials that will be readily accessi...
Massive propagators in instanton fields
International Nuclear Information System (INIS)
Brown, L.S.; Lee, C.
1978-01-01
Green's functions for massive spinor and vector particles propagating in a self-dual but otherwise arbitrary non-Abelian gauge field are shown to be completely determined by the corresponding Green's functions of massive scalar particles
Laser Beam Propagation Through Inhomogeneous Media with Shock-Like Profiles: Modeling and Computing
Adamovsky, Grigory; Ida, Nathan
1997-01-01
Wave propagation in inhomogeneous media has been studied for such diverse applications as propagation of radiowaves in atmosphere, light propagation through thin films and in inhomogeneous waveguides, flow visualization, and others. In recent years an increased interest has been developed in wave propagation through shocks in supersonic flows. Results of experiments conducted in the past few years has shown such interesting phenomena as a laser beam splitting and spreading. The paper describes a model constructed to propagate a laser beam through shock-like inhomogeneous media. Numerical techniques are presented to compute the beam through such media. The results of computation are presented, discussed, and compared with experimental data.
Quantum Graphical Models and Belief Propagation
International Nuclear Information System (INIS)
Leifer, M.S.; Poulin, D.
2008-01-01
Belief Propagation algorithms acting on Graphical Models of classical probability distributions, such as Markov Networks, Factor Graphs and Bayesian Networks, are amongst the most powerful known methods for deriving probabilistic inferences amongst large numbers of random variables. This paper presents a generalization of these concepts and methods to the quantum case, based on the idea that quantum theory can be thought of as a noncommutative, operator-valued, generalization of classical probability theory. Some novel characterizations of quantum conditional independence are derived, and definitions of Quantum n-Bifactor Networks, Markov Networks, Factor Graphs and Bayesian Networks are proposed. The structure of Quantum Markov Networks is investigated and some partial characterization results are obtained, along the lines of the Hammersley-Clifford theorem. A Quantum Belief Propagation algorithm is presented and is shown to converge on 1-Bifactor Networks and Markov Networks when the underlying graph is a tree. The use of Quantum Belief Propagation as a heuristic algorithm in cases where it is not known to converge is discussed. Applications to decoding quantum error correcting codes and to the simulation of many-body quantum systems are described
Pulsed positive corona streamer propagation and branching
International Nuclear Information System (INIS)
Veldhuizen, E.M. van; Rutgers, W.R.
2002-01-01
The propagation and branching of pulsed positive corona streamers in a short gap is observed with high resolution in space and time. The appearance of the pre-breakdown phenomena can be controlled by the electrode configuration, the gas composition and the impedance of the pulsed power circuit. In a point-wire gap the positive corona shows much more branching than in the parallel plane gap with a protrusion. In air, the branching is more pronounced than in argon. The pulsed power circuit appears to operate in two modes, either as an inductive circuit creating a lower number of thick streamers or as a resistive circuit giving a higher number of thin streamers. A possible cause for branching is electrostatic repulsion of two parts of the streamer head. The electric field at the streamer head is limited, the maximum values found are ∼170 kV cm -1 in air and ∼100 kV cm -1 in argon. At these maximum field strengths, the electrons have 5-10 eV energy, so the ionization is dominated by two-step processes. Differences between argon and ambient air in the field strength at which streamers propagate are ascribed to the difference in de-excitation processes in noble and molecular gases. The fact that the pulsed power circuit can control the streamer structure is important for applications, but this effect must also be taken into account in fundamental studies of streamer propagation and branching. (author)
Pulsed positive corona streamer propagation and branching
Energy Technology Data Exchange (ETDEWEB)
Veldhuizen, E.M. van [Department of Physics, Technische Universiteit Eindhoven, Eindhoven (Netherlands)]. E-mail: e.m.v.veldhuizen@tue.nl; Rutgers, W.R. [Department of Physics, Technische Universiteit Eindhoven, Eindhoven (Netherlands)
2002-09-07
The propagation and branching of pulsed positive corona streamers in a short gap is observed with high resolution in space and time. The appearance of the pre-breakdown phenomena can be controlled by the electrode configuration, the gas composition and the impedance of the pulsed power circuit. In a point-wire gap the positive corona shows much more branching than in the parallel plane gap with a protrusion. In air, the branching is more pronounced than in argon. The pulsed power circuit appears to operate in two modes, either as an inductive circuit creating a lower number of thick streamers or as a resistive circuit giving a higher number of thin streamers. A possible cause for branching is electrostatic repulsion of two parts of the streamer head. The electric field at the streamer head is limited, the maximum values found are {approx}170 kV cm{sup -1} in air and {approx}100 kV cm{sup -1} in argon. At these maximum field strengths, the electrons have 5-10 eV energy, so the ionization is dominated by two-step processes. Differences between argon and ambient air in the field strength at which streamers propagate are ascribed to the difference in de-excitation processes in noble and molecular gases. The fact that the pulsed power circuit can control the streamer structure is important for applications, but this effect must also be taken into account in fundamental studies of streamer propagation and branching. (author)
Crack propagation on spherical pressure vessels
International Nuclear Information System (INIS)
Lebey, J.; Roche, R.
1975-01-01
The risk presented by a crack on a pressure vessel built with a ductile steel cannot be well evaluated by simple application of the rules of Linear Elastic Fracture Mechanics, which only apply to brittle materials. Tests were carried out on spherical vessels of three different scales built with the same steel. Cracks of different length were machined through the vessel wall. From the results obtained, crack initiation stress (beginning of stable propagation) and instable propagation stress may be plotted against the lengths of these cracks. For small and medium size, subject to ductile fracture, the resulting curves are identical, and may be used for ductile fracture prediction. Brittle rupture was observed on larger vessels and crack propagation occurred at lower stress level. Preceedings curves are not usable for fracture analysis. Ultimate pressure can be computed with a good accuracy by using equivalent energy toughness, Ksub(1cd), characteristic of the metal plates. Satisfactory measurements have been obtained on thin samples. The risks of brittle fracture may then judged by comparing Ksub(1cd) with the calculated K 1 value, in which corrections for vessel shape are taken into account. It is thus possible to establish the bursting pressure of cracked spherical vessels, with the help of two rules, one for brittle fracture, the other for ductile instability. A practical method is proposed on the basis of the work reported here
Self-affinity and nonextensivity of sunspots
International Nuclear Information System (INIS)
Moret, M.A.
2014-01-01
In this paper we study the time series of sunspots by using two different approaches, analyzing its self-affine behavior and studying its distribution. The long-range correlation exponent α has been calculated via Detrended Fluctuation Analysis and the power law vanishes to values greater than 11 years. On the other hand, the distribution of the sunspots obeys a q-exponential decay that suggests a non-extensive behavior. This observed characteristic seems to take an alternative interpretation of the sunspots dynamics. The present findings suggest us to propose a dynamic model of sunspots formation based on a nonlinear Fokker–Planck equation. Therefore its dynamic process follows the generalized thermostatistical formalism.
Wave propagation in nanostructures nonlocal continuum mechanics formulations
Gopalakrishnan, Srinivasan
2013-01-01
Wave Propagation in Nanostructures describes the fundamental and advanced concepts of waves propagating in structures that have dimensions of the order of nanometers. The book is fundamentally based on non-local elasticity theory, which includes scale effects in the continuum model. The book predominantly addresses wave behavior in carbon nanotubes and graphene structures, although the methods of analysis provided in this text are equally applicable to other nanostructures. The book takes the reader from the fundamentals of wave propagation in nanotubes to more advanced topics such as rotating nanotubes, coupled nanotubes, and nanotubes with magnetic field and surface effects. The first few chapters cover the basics of wave propagation, different modeling schemes for nanostructures and introduce non-local elasticity theories, which form the building blocks for understanding the material provided in later chapters. A number of interesting examples are provided to illustrate the important features of wave behav...
FATIGUE CRACK PROPAGATION THROUGH AUSTEMPERED DUCTILE IRON MICROSTRUCTURE
Directory of Open Access Journals (Sweden)
Lukáš Bubenko
2010-10-01
Full Text Available Austempered ductile iron (ADI has a wide range of application, particularly for castings used in automotive and earth moving machinery industries. These components are usually subjected to variable dynamic loading that may promote initiation and propagation of fatigue cracks up to final fracture. Thus, it is important to determine the fatigue crack propagation behavior of ADI. Since fatigue crack growth rate (da/dN vs. stress intensity factor K data describe fatigue crack propagation resistance and fatigue durability of structural materials, da/dN vs. Ka curves of ADI 1050 are reported here. The threshold amplitude of stress intensity factor Kath is also determined. Finally, the influence of stress intensity factor amplitude to the character of fatigue crack propagation through the ADI microstructure is described.
Hydrodynamic model of hydrogen-flame propagation in reactor vessels
International Nuclear Information System (INIS)
Baer, M.R.; Ratzel, A.C.
1982-01-01
A hydrodynamic model for hydrogen flame propagation in reactor geometries is presented. This model is consistent with the theory of slow combustion in which the gasdynamic field equations are treated in the limit of small Mach numbers. To the lowest order, pressure is spatially uniform. The flame is treated as a density and entropy discontinuity which propagates at prescribed burning velocities, corresponding to laminar or turbulent flames. Radiation cooling of the burned combustion gases and possible preheating of the unburned gases during propagation of the flame is included using a molecular gas-band thermal radiation model. Application of this model has been developed for 1-D variable area flame propagation. Multidimensional effects induced by hydrodynamics and buoyancy are introduced as a correction to the burn velocity (which reflects a modification of planar flame surface to a distorted surface) using experimentally measured pressure-rise time data for hydrogen/air deflagrations in cylindrical vessels
Laser beam propagation through random media
Andrews, Larry C
2005-01-01
Since publication of the first edition of this text in 1998, there have been several new, important developments in the theory of beam wave propagation through a random medium, which have been incorporated into this second edition. Also new to this edition are models for the scintillation index under moderate-to-strong irradiance fluctuations; models for aperture averaging based on ABCD ray matrices; beam wander and its effects on scintillation; theory of partial coherence of the source; models of rough targets for ladar applications; phase fluctuations; analysis of other beam shapes; plus exp
Multiprocessor Real-Time Scheduling with Hierarchical Processor Affinities
Bonifaci , Vincenzo; Brandenburg , Björn; D'Angelo , Gianlorenzo; Marchetti-Spaccamela , Alberto
2016-01-01
International audience; Many multiprocessor real-time operating systems offer the possibility to restrict the migrations of any task to a specified subset of processors by setting affinity masks. A notion of " strong arbitrary processor affinity scheduling " (strong APA scheduling) has been proposed; this notion avoids schedulability losses due to overly simple implementations of processor affinities. Due to potential overheads, strong APA has not been implemented so far in a real-time operat...
Quantifying high-affinity binding of hydrophobic ligands by isothermal titration calorimetry.
Krainer, Georg; Broecker, Jana; Vargas, Carolyn; Fanghänel, Jörg; Keller, Sandro
2012-12-18
A fast and reliable quantification of the binding thermodynamics of hydrophobic high-affinity ligands employing a new calorimetric competition experiment is described. Although isothermal titration calorimetry is the method of choice for a quantitative characterization of intermolecular interactions in solution, a reliable determination of a dissociation constant (K(D)) is typically limited to the range 100 μM > K(D) > 1 nM. Interactions displaying higher or lower K(D) values can be assessed indirectly, provided that a suitable competing ligand is available whose K(D) falls within the directly accessible affinity window. This established displacement assay, however, requires the high-affinity ligand to be soluble at high concentrations in aqueous buffer and, consequently, poses serious problems in the study of protein binding involving small-molecule ligands dissolved in organic solvents--a familiar case in many drug-discovery projects relying on compound libraries. The calorimetric competition assay introduced here overcomes this limitation, thus allowing for a detailed thermodynamic description of high-affinity receptor-ligand interactions involving poorly water-soluble compounds. Based on a single titration of receptor into a dilute mixture of the two competing ligands, this competition assay provides accurate and precise values for the dissociation constants and binding enthalpies of both high- and moderate-affinity ligands. We discuss the theoretical background underlying the approach, demonstrate its practical application to metal ion chelation and high-affinity protein-inhibitor interactions, and explore its potential and limitations with the aid of simulations and statistical analyses.
Group symmetries and information propagation
International Nuclear Information System (INIS)
Draayer, J.P.
1980-01-01
Spectroscopy concerns itself with the ways in which the Hamiltonian and other interesting operators defined in few-particle spaces are determined or determine properties of many-particle systems. But the action of the central limit theorem (CLT) filters the transmission of information between source and observed so whether propagating forward from a few-particle defining space, as is usual in theoretical studies, or projecting backward to it from measured things, each is only sensitive to averaged properties of the other. Our concern is with the propagation of spectroscopic information in the presence of good symmetries when filtering action of the CLT is effective. Specifically, we propose to address the question, What propagates and how. We begin with some examples, using both scalar and isospin geometries to illustrate simple propagation. Examples of matrix propagation are studied; contact with standard tensor algebra is established and an algorithm put forward for the expansion of any operator in terms of another set, complete or not; shell-model results for 20 Ne using a realistic interaction and two trace-equivalent forms are presented; and some further challenges are mentioned
Energy Technology Data Exchange (ETDEWEB)
Glinec, Y
2006-09-15
This experimental study concerns the generation of electron beams with original properties. These electrons beams originate from the interaction of an ultra-intense and short laser pulse with a gas jet. Previously, these electron beams had a large divergence and a broad spectrum. A major improvement in this field was achieved when an electron beam with low divergence (10 mrad) and a peaked spectrum (170 MeV) was observed during this thesis, using a new single shot electron spectrometer. A parametric study of the interaction allowed to observe the evolution of the electron beam. Experiments have been carried out to deepen the characterization of the electron beam. The observation of transition radiation generated by the electrons at an interface shows that the electron beam interacts with the laser pulse during the acceleration. Radial oscillations of the electron beam around the laser axis, named betatron oscillations, were also observed on the electron spectra. Such a quasi-monoenergetic spectrum is essential for many applications. In order to justify the interest of this electron beam, several applications are presented: a sub-milli-metric gamma-ray radiography of dense objects, a dose profile of the electron beam comparable to present capabilities of photon sources for radiotherapy, a very short temporal profile useful for water radiolysis and the generation of a bright X-ray source with low divergence. (author)
Energy Technology Data Exchange (ETDEWEB)
Glinec, Y
2006-09-15
This experimental study concerns the generation of electron beams with original properties. These electrons beams originate from the interaction of an ultra-intense and short laser pulse with a gas jet. Previously, these electron beams had a large divergence and a broad spectrum. A major improvement in this field was achieved when an electron beam with low divergence (10 mrad) and a peaked spectrum (170 MeV) was observed during this thesis, using a new single shot electron spectrometer. A parametric study of the interaction allowed to observe the evolution of the electron beam. Experiments have been carried out to deepen the characterization of the electron beam. The observation of transition radiation generated by the electrons at an interface shows that the electron beam interacts with the laser pulse during the acceleration. Radial oscillations of the electron beam around the laser axis, named betatron oscillations, were also observed on the electron spectra. Such a quasi-monoenergetic spectrum is essential for many applications. In order to justify the interest of this electron beam, several applications are presented: a sub-milli-metric gamma-ray radiography of dense objects, a dose profile of the electron beam comparable to present capabilities of photon sources for radiotherapy, a very short temporal profile useful for water radiolysis and the generation of a bright X-ray source with low divergence. (author)
Signal propagation along the axon.
Rama, Sylvain; Zbili, Mickaël; Debanne, Dominique
2018-03-08
Axons link distant brain regions and are usually considered as simple transmission cables in which reliable propagation occurs once an action potential has been generated. Safe propagation of action potentials relies on specific ion channel expression at strategic points of the axon such as nodes of Ranvier or axonal branch points. However, while action potentials are generally considered as the quantum of neuronal information, their signaling is not entirely digital. In fact, both their shape and their conduction speed have been shown to be modulated by activity, leading to regulations of synaptic latency and synaptic strength. We report here newly identified mechanisms of (1) safe spike propagation along the axon, (2) compartmentalization of action potential shape in the axon, (3) analog modulation of spike-evoked synaptic transmission and (4) alteration in conduction time after persistent regulation of axon morphology in central neurons. We discuss the contribution of these regulations in information processing. Copyright © 2018 Elsevier Ltd. All rights reserved.
Salomons, E.M.; Lohman, W.J.A.; Zhou, H.
2016-01-01
Propagation of sound waves in air can be considered as a special case of fluid dynamics. Consequently, the lattice Boltzmann method (LBM) for fluid flow can be used for simulating sound propagation. In this article application of the LBM to sound propagation is illustrated for various cases:
Wave equations for pulse propagation
International Nuclear Information System (INIS)
Shore, B.W.
1987-01-01
Theoretical discussions of the propagation of pulses of laser radiation through atomic or molecular vapor rely on a number of traditional approximations for idealizing the radiation and the molecules, and for quantifying their mutual interaction by various equations of propagation (for the radiation) and excitation (for the molecules). In treating short-pulse phenomena it is essential to consider coherent excitation phenomena of the sort that is manifest in Rabi oscillations of atomic or molecular populations. Such processes are not adequately treated by rate equations for excitation nor by rate equations for radiation. As part of a more comprehensive treatment of the coupled equations that describe propagation of short pulses, this memo presents background discussion of the equations that describe the field. This memo discusses the origin, in Maxwell's equations, of the wave equation used in the description of pulse propagation. It notes the separation into lamellar and solenoidal (or longitudinal and transverse) and positive and negative frequency parts. It mentions the possibility of separating the polarization field into linear and nonlinear parts, in order to define a susceptibility or index of refraction and, from these, a phase and group velocity. The memo discusses various ways of characterizing the polarization characteristics of plane waves, that is, of parameterizing a transverse unit vector, such as the Jones vector, the Stokes vector, and the Poincare sphere. It discusses the connection between macroscopically defined quantities, such as the intensity or, more generally, the Stokes parameters, and microscopic field amplitudes. The material presented here is a portion of a more extensive treatment of propagation to be presented separately. The equations presented here have been described in various books and articles. They are collected here as a summary and review of theory needed when treating pulse propagation
Vegetative propagation of Bambusa vulgaris
Directory of Open Access Journals (Sweden)
Rafael Malfitano Braga
2017-06-01
Full Text Available Bamboo is an important source of raw material of multiple uses. The development of simple techniques for its propagation is a practical way to enable its implementation in ownership of low technology. The present work had the objective of evaluating artisanal propagation methods for Bambusa vulgaris. Two types of propagules were tested, with buds budded or not, and three relative positions to the removal of vegetative material on the culm. The best propagule was with only one node, extracted from the lower thirds of the stem, presenting 72% of rooting. This result demonstrates its potential for seedling production of this species under low tech.
Nonequilibrium theory of flame propagation
International Nuclear Information System (INIS)
Merzhanov, A.G.
1995-01-01
The nonequilibrium theory of flame propagation is considered as applied to the following three processes of wave propagation: the combustion waves of the second kind, the combustion waves with broad reaction zones, and the combustion waves with chemical stages. Kinetic and combustion wave parameters are presented for different in composition mixtures of boron and transition metals, such as Zr, Hf, Ti, Nb, Ta, Mo, as well as for the Ta-N, Zr-C-H, Nb-B-O systems to illustrate specific features of the above-mentioned processes [ru
Cambrian trilobites with Siberian affinities, southwestern Alaska
Energy Technology Data Exchange (ETDEWEB)
Palmer, A.R.; Egbert, R.M.; Sullivan, R.; Knoth, J.S.
1985-02-01
Cambrian trilobites occur in two levels (about 7 m apart) in the core of a large, complex anticlinal structure in the area between the Taylor Mountains and the Hoholitna River in southwestern Alaska. The lower collection contains Erbia, Macannaia (a species close to Soviet forms described as Pagetia ferox Lermontova), two species of Kootenia (including one perhaps cospecific with forms from the central Brooks range), and several species of ptychoparioid trilobites. It is clear that biogeographic affinities are with the transitional facies of the eastern Siberian platform and the south Siberian foldbelt. In Soviet terms, the age of the collection falls in a disputed interval called latest Early Cambrian (Tojonian) by some authors, and earliest Middle Cambrian (Amgan) by others. In North American terms, Macannaia is known only from early Middle Cambrian beds. The younger collection contains abundant agnostids, a variety of conocoryphids, Paradoxides, and several species of ptychoparioid trilobites. This is an assemblage of undoubted late Middle Cambrian age, comparable to faunas described from the Maya State of the Siberian platform and the Paradoxides paradoxissimus Stage of the Baltic region. Both faunas are from ocean-facing or outer shelf environments. None of the key non-agnostid or non-pagetiid elements have been seen previously in deposits of Cambrian North America.
Set-Membership Proportionate Affine Projection Algorithms
Directory of Open Access Journals (Sweden)
Stefan Werner
2007-01-01
Full Text Available Proportionate adaptive filters can improve the convergence speed for the identification of sparse systems as compared to their conventional counterparts. In this paper, the idea of proportionate adaptation is combined with the framework of set-membership filtering (SMF in an attempt to derive novel computationally efficient algorithms. The resulting algorithms attain an attractive faster converge for both situations of sparse and dispersive channels while decreasing the average computational complexity due to the data discerning feature of the SMF approach. In addition, we propose a rule that allows us to automatically adjust the number of past data pairs employed in the update. This leads to a set-membership proportionate affine projection algorithm (SM-PAPA having a variable data-reuse factor allowing a significant reduction in the overall complexity when compared with a fixed data-reuse factor. Reduced-complexity implementations of the proposed algorithms are also considered that reduce the dimensions of the matrix inversions involved in the update. Simulations show good results in terms of reduced number of updates, speed of convergence, and final mean-squared error.
[Separation of osteoclasts by lectin affinity chromatography].
Itokazu, M; Tan, A; Tanaka, S
1991-09-01
Newborn rat calvaria bone cells obtained by digestion were fractionated on columns of wheat-germ agglutinin (WGA) sepharose 6MB for osteoclast isolation. The initial nonspecific binding cells which were passed through the WGA sepharose column by a buffer acquired a high enzyme activity of alkaline phosphatase, but not that of acid phosphatase. However, elution of cells using a buffer with the addition of N-acetyl-D-glucosamine resulted in a high acid phosphatase activity but no alkaline phosphatase activity. The former WGA binding negative fraction enriched osteoblasts averaging 30 microns in size. The latter WGA binding positive fraction enriched osteoclasts ranging from 20 microns to 60 microns in size. The electron-microscope clearly demonstrated the cellular details of osteoclasts. Isolated cell counts showed a ratio of six to four. These results indicate that our method of osteoclast isolation is simple and useful in lectin affinity chromatography because all cells have sugar moieties on their surface and the binding of osteoclasts can be reversed by the addition of specific lectin-binding sugars to the eluting buffer.
Affine connection form of Regge calculus
Khatsymovsky, V. M.
2016-12-01
Regge action is represented analogously to how the Palatini action for general relativity (GR) as some functional of the metric and a general connection as independent variables represents the Einstein-Hilbert action. The piecewise flat (or simplicial) spacetime of Regge calculus is equipped with some world coordinates and some piecewise affine metric which is completely defined by the set of edge lengths and the world coordinates of the vertices. The conjugate variables are the general nondegenerate matrices on the three-simplices which play the role of a general discrete connection. Our previous result on some representation of the Regge calculus action in terms of the local Euclidean (Minkowsky) frame vectors and orthogonal connection matrices as independent variables is somewhat modified for the considered case of the general linear group GL(4, R) of the connection matrices. As a result, we have some action invariant w.r.t. arbitrary change of coordinates of the vertices (and related GL(4, R) transformations in the four-simplices). Excluding GL(4, R) connection from this action via the equations of motion we have exactly the Regge action for the considered spacetime.
Affinity of serum apolipoproteins for lipid monolayers
International Nuclear Information System (INIS)
Ibdah, J.A.
1987-01-01
The effects of lipid composition and packing as well as the structure of the protein on the affinities of apolipoproteins for lipid monolayers have been investigated. The adsorption of 14 C-reductively methylated human apolipoproteins A-I and A-II at saturating subphase concentrations to monolayers prepared with synthetic lipids or lipoprotein surface lipids spread at various initial surface pressures has been studied. The adsorption of apolipoproteins is monitored by following the surface radioactivity using a gas flow counter and Wilhelmy plate, respectively. The physical states of the lipid monolayers are evaluated by measurement of the surface pressure-molecular area isotherms using a Langmuir-Adam surface balance. The probable helical regions in various apolipoproteins have been predicted using a secondary structure analysis computer program. The mean residue hydrophobicity and mean residue hydrophobic moment for the predicted helical segments have been calculated. The surface properties of synthetic peptides which are amphipathic helix analogs have been investigated at the air-water and lipid-water interfaces
Neutrino propagation in a fluctuating sun
International Nuclear Information System (INIS)
Burgess, C.P.; Michaud, D.
1997-01-01
We adapt to neutrino physics a general formulation for particle propagation in fluctuating media, initially developed for applications to electromagnetism and neutron optics. In leading approximation this formalism leads to the usual MSW effective Hamiltonian governing neutrino propagation through a medium. Next-to-leading contributions describe deviations from this description, which arise due to neutrino interactions with fluctuations in the medium. We compute these corrections for two types of fluctuations: (i) microscopic thermal fluctuations and (ii) macroscopic fluctuations in the medium s density. While the first of these reproduces standard estimates, which are negligible for applications to solar neutrinos, we find that the second can be quite large, since it grows in size with the correlation length of the fluctuation. We consider two models in some detail. For fluctuations whose correlations extend only over a local region in space of length l, appreciable effects for MSW oscillations arise if (δn/n) 2 l approx-gt 100m or so. Alternatively, a crude model of helioseismic p-waves gives appreciable effects only when (δn/n)approx-gt 1%. In general the dominant effect is to diminish the quality of the resonance, making the suppression of the 7 Be neutrinos a good experimental probe of fluctuations deep within the sun. Fluctuations can also provide a new mechanism for reducing the solar neutrino flux, giving an energy-independent suppression factor of 1/2 away from the resonant region, even for small vacuum mixing angles. copyright 1997 Academic Press, Inc
Morse oscillator propagator in the high temperature limit II: Quantum dynamics and spectroscopy
Toutounji, Mohamad
2018-04-01
This paper is a continuation of Paper I (Toutounji, 2017) of which motivation was testing the applicability of Morse oscillator propagator whose analytical form was derived by Duru (1983). This is because the Morse oscillator propagator was reported (Duru, 1983) in a triple-integral form of a functional of modified Bessel function of the first kind, which considerably limits its applicability. For this reason, I was prompted to find a regime under which Morse oscillator propagator may be simplified and hence be expressed in a closed-form. This was well accomplished in Paper I. Because Morse oscillator is of central importance and widely used in modelling vibrations, its propagator applicability will be extended to applications in quantum dynamics and spectroscopy as will be reported in this paper using the off-diagonal propagator of Morse oscillator whose analytical form is derived.
Theoretical determination of proton affinity differences in zeolites
Kramer, G.J.; Santen, van R.A.
1993-01-01
An important factor in zeolite catalysis is the proton affinity, i.e., the energy required to remove a proton from the zeolite lattice. Differences in proton affinity are expected to influence the catalytic activity of acid sites, making the catalytically active sites inhomogeneous (within one
Capillary electrophoresis-based assessment of nanobody affinity and purity
Haselberg, Rob; Oliveira, Sabrina; van der Meel, Roy; Somsen, Govert W; de Jong, Gerhardus J
2014-01-01
Drug purity and affinity are essential attributes during development and production of therapeutic proteins. In this work, capillary electrophoresis (CE) was used to determine both the affinity and composition of the biotechnologically produced "nanobody" EGa1, the binding fragment of a
Generalized Warburg impedance on realistic self-affine fractals ...
Indian Academy of Sciences (India)
2016-08-26
Aug 26, 2016 ... We analyse the problem of impedance for a diffusion controlled charge transfer process across an irregular interface. These interfacial irregularities are characterized as two class of random fractals: (i) a statistically isotropic self-affine fractals and (ii) a statistically corrugated self-affine fractals.
Polynomial Primal-Dual Cone Affine Scaling for Semidefinite Programming
A.B. Berkelaar (Arjan); J.F. Sturm; S. Zhang (Shuzhong)
1996-01-01
textabstractIn this paper we generalize the primal--dual cone affine scaling algorithm of Sturm and Zhang to semidefinite programming. We show in this paper that the underlying ideas of the cone affine scaling algorithm can be naturely applied to semidefinite programming, resulting in a new
Affine group formulation of the Standard Model coupled to gravity
Energy Technology Data Exchange (ETDEWEB)
Chou, Ching-Yi, E-mail: l2897107@mail.ncku.edu.tw [Department of Physics, National Cheng Kung University, Taiwan (China); Ita, Eyo, E-mail: ita@usna.edu [Department of Physics, US Naval Academy, Annapolis, MD (United States); Soo, Chopin, E-mail: cpsoo@mail.ncku.edu.tw [Department of Physics, National Cheng Kung University, Taiwan (China)
2014-04-15
In this work we apply the affine group formalism for four dimensional gravity of Lorentzian signature, which is based on Klauder’s affine algebraic program, to the formulation of the Hamiltonian constraint of the interaction of matter and all forces, including gravity with non-vanishing cosmological constant Λ, as an affine Lie algebra. We use the hermitian action of fermions coupled to gravitation and Yang–Mills theory to find the density weight one fermionic super-Hamiltonian constraint. This term, combined with the Yang–Mills and Higgs energy densities, are composed with York’s integrated time functional. The result, when combined with the imaginary part of the Chern–Simons functional Q, forms the affine commutation relation with the volume element V(x). Affine algebraic quantization of gravitation and matter on equal footing implies a fundamental uncertainty relation which is predicated upon a non-vanishing cosmological constant. -- Highlights: •Wheeler–DeWitt equation (WDW) quantized as affine algebra, realizing Klauder’s program. •WDW formulated for interaction of matter and all forces, including gravity, as affine algebra. •WDW features Hermitian generators in spite of fermionic content: Standard Model addressed. •Constructed a family of physical states for the full, coupled theory via affine coherent states. •Fundamental uncertainty relation, predicated on non-vanishing cosmological constant.
Fermionic construction of vertex operators for twisted affine algebras
International Nuclear Information System (INIS)
Frappat, L.; Sorba, P.; Sciarrino, A.
1988-03-01
We construct vertex operator representations of the twisted affine algebras in terms of fermionic (or parafermionic in some cases) elementary fields. The folding method applied to the extended Dynkin diagrams of the affine algebras allows us to determine explicitly these fermionic fields as vertex operators
Generalized Warburg impedance on realistic self-affine fractals
Indian Academy of Sciences (India)
We analyse the problem of impedance for a diffusion controlled charge transfer process across an irregular interface. These interfacial irregularities are characterized as two class of random fractals: (i) a statistically isotropic self-affine fractals and (ii) a statistically corrugated self-affine fractals. The information about the ...
Pseudo-affinity chromatography of rumen microbial cellulase on ...
African Journals Online (AJOL)
Pseudo-affinity chromatography of rumen microbial cellulase on Sepharose- Cibacron Blue F3GA. ... African Journal of Biotechnology ... Pseudo affinity adsorption of bioproducts on Sepharose-cibacron blue F3-GA was subjected to rumen microbial enzyme evaluation through batch binding and column chromatography of ...
Self-affine roughness influence on redox reaction charge admittance
Palasantzas, G
2005-01-01
In this work we investigate the influence of self-affine electrode roughness on the admittance of redox reactions during facile charge transfer kinetics. The self-affine roughness is characterized by the rms roughness amplitude w, the correlation length xi and the roughness exponent H (0
Affine Toda equations and solutions in the homogeneous grading
Czech Academy of Sciences Publication Activity Database
Zuevsky, Alexander
2018-01-01
Roč. 542, April 1 (2018), s. 149-161 ISSN 0024-3795 Institutional support: RVO:67985840 Keywords : affine Lie gebras * affine Toda modes * solitons Subject RIV: BA - General Mathematics OBOR OECD: Pure mathematics Impact factor: 0.973, year: 2016 https://www.sciencedirect.com/science/article/pii/S0024379517302100
Online identification of continuous bimodal and trimodal piecewise affine systems
Le, Q.T.; van den Boom, A.J.J.; Baldi, S.; Rantzer, Anders; Bagterp Jørgensen, John; Stoustrup, Jakob
2016-01-01
This paper investigates the identification of continuous piecewise affine systems in state space form with jointly unknown partition and subsystem matrices. The partition of the system is generated by the so-called centers. By representing continuous piecewise affine systems in the max-form and
Propagation and wavefront ambiguity of linear nondiffracting beams
Grunwald, R.; Bock, M.
2014-02-01
Ultrashort-pulsed Bessel and Airy beams in free space are often interpreted as "linear light bullets". Usually, interconnected intensity profiles are considered a "propagation" along arbitrary pathways which can even follow curved trajectories. A more detailed analysis, however, shows that this picture gives an adequate description only in situations which do not require to consider the transport of optical signals or causality. To also cover these special cases, a generalization of the terms "beam" and "propagation" is necessary. The problem becomes clearer by representing the angular spectra of the propagating wave fields by rays or Poynting vectors. It is known that quasi-nondiffracting beams can be described as caustics of ray bundles. Their decomposition into Poynting vectors by Shack-Hartmann sensors indicates that, in the frame of their classical definition, the corresponding local wavefronts are ambiguous and concepts based on energy density are not appropriate to describe the propagation completely. For this reason, quantitative parameters like the beam propagation factor have to be treated with caution as well. For applications like communication or optical computing, alternative descriptions are required. A heuristic approach based on vector field based information transport and Fourier analysis is proposed here. Continuity and discontinuity of far field distributions in space and time are discussed. Quantum aspects of propagation are briefly addressed.
Pressure wave propagation in the discharge piping with water pool
International Nuclear Information System (INIS)
Bang, Young S.; Seul, Kwang W.; Kim, In Goo
2004-01-01
Pressure wave propagation in the discharge piping with a sparger submerged in a water pool, following the opening of a safety relief valve, is analyzed. To predict the pressure transient behavior, a RELAP5/MOD3 code is used. The applicability of the RELAP5 code and the adequacy of the present modeling scheme are confirmed by simulating the applicable experiment on a water hammer with voiding. As a base case, the modeling scheme was used to calculate the wave propagation inside a vertical pipe with sparger holes and submerged within a water pool. In addition, the effects on wave propagation of geometric factors, such as the loss coefficient, the pipe configuration, and the subdivision of sparger pipe, are investigated. The effects of inflow conditions, such as water slug inflow and the slow opening of a safety relief valve are also examined
Duals of Affine Grassmann Codes and Their Relatives
DEFF Research Database (Denmark)
Beelen, P.; Ghorpade, S. R.; Hoholdt, T.
2012-01-01
Affine Grassmann codes are a variant of generalized Reed-Muller codes and are closely related to Grassmann codes. These codes were introduced in a recent work by Beelen Here, we consider, more generally, affine Grassmann codes of a given level. We explicitly determine the dual of an affine...... Grassmann code of any level and compute its minimum distance. Further, we ameliorate the results by Beelen concerning the automorphism group of affine Grassmann codes. Finally, we prove that affine Grassmann codes and their duals have the property that they are linear codes generated by their minimum......-weight codewords. This provides a clean analogue of a corresponding result for generalized Reed-Muller codes....
Exploring Girls' Science Affinities Through an Informal Science Education Program
Todd, Brandy; Zvoch, Keith
2017-10-01
This study examines science interests, efficacy, attitudes, and identity—referred to as affinities, in the context of an informal science outreach program for girls. A mixed methods design was used to explore girls' science affinities before, during, and after participation in a cohort-based summer science camp. Multivariate analysis of survey data revealed that girls' science affinities varied as a function of the joint relationship between family background and number of years in the program, with girls from more affluent families predicted to increase affinities over time and girls from lower income families to experience initial gains in affinities that diminish over time. Qualitative examination of girls' perspectives on gender and science efficacy, attitudes toward science, and elements of science identities revealed a complex interplay of gendered stereotypes of science and girls' personal desires to prove themselves knowledgeable and competent scientists. Implications for the best practice in fostering science engagement and identities in middle school-aged girls are discussed.
DAYA ANTIBAKTERI EKSTRAK ETANOL DAUN SENGGANI (Melastoma affine D. Don
Directory of Open Access Journals (Sweden)
Ika Trisharyanti Dian Kusumowati
2014-08-01
Full Text Available Melastoma affine D. Don had some activities such as anthelmintic, antibacteria, antiinfiammation, antifungal, and antitumor. The aims of this research was determine antibacteria activity of ethanolic extract of Melastoma affine D. Don. The antimicrobial activity was tested by solid dilution method to get Minimum Inhibition Concentration (MIC. The compounds in Melastoma affine D. Don was analyzed by tube test method and Thin Layer Chromatography (TLC with chloroform : methanol : formic acid (8,5:1,5:0,5 as mobile phase and silica gel GF254 as stationary phase. The result showed ethanolic extract of Melastoma affine D. Don contains alkaloid, polyphenol, fiavonoid, saponin, and essential oil. The MIC of Senggani against Staphylococcus aureus was 2% and 3% against Escherichia coli and the extract could not inhibit Staphylococcus aureus and Escherichia coli multiresistant until concentration 7% extract ethanol. Keywords: Melastoma affine D. Don, Staphylococcus aureus, Escherichia coli
Propagation modeling in a manufacturing environment
Energy Technology Data Exchange (ETDEWEB)
Birdwell, J.D.; Horn, R.D.; Rader, M.S. [Univ. of Tennessee, Knoxville, TN (United States). Dept. of Electrical Engineering; Shourbaji, A.A. [Oak Ridge Centers for Mfg. Technology, TN (United States)
1995-12-31
Wireless sensors which utilize low power spread spectrum data transmission have significant potential in industrial environments due to low cabling and installation costs. In addition, this technology imposes fewer constraints upon placement due to cable routing, allowing sensors to be installed in areas with poor access. Limitations are imposed on sensor and receiver placement by electromagnetic propagation effects in the industrial environment, including multipath and the presence of absorbing media. This paper explores the electromagnetic analysis of potential wireless sensor applications using commercially available finite element software. In addition, since the applications environment is often at least partially specified in electronic form using computer-aided drafting software, the importation of information from this software is discussed. Both three-dimensional and two-dimensional examples are presented which demonstrate the utility and limitations of the method.
Physics of Earthquake Rupture Propagation
Xu, Shiqing; Fukuyama, Eiichi; Sagy, Amir; Doan, Mai-Linh
2018-05-01
A comprehensive understanding of earthquake rupture propagation requires the study of not only the sudden release of elastic strain energy during co-seismic slip, but also of other processes that operate at a variety of spatiotemporal scales. For example, the accumulation of the elastic strain energy usually takes decades to hundreds of years, and rupture propagation and termination modify the bulk properties of the surrounding medium that can influence the behavior of future earthquakes. To share recent findings in the multiscale investigation of earthquake rupture propagation, we held a session entitled "Physics of Earthquake Rupture Propagation" during the 2016 American Geophysical Union (AGU) Fall Meeting in San Francisco. The session included 46 poster and 32 oral presentations, reporting observations of natural earthquakes, numerical and experimental simulations of earthquake ruptures, and studies of earthquake fault friction. These presentations and discussions during and after the session suggested a need to document more formally the research findings, particularly new observations and views different from conventional ones, complexities in fault zone properties and loading conditions, the diversity of fault slip modes and their interactions, the evaluation of observational and model uncertainties, and comparison between empirical and physics-based models. Therefore, we organize this Special Issue (SI) of Tectonophysics under the same title as our AGU session, hoping to inspire future investigations. Eighteen articles (marked with "this issue") are included in this SI and grouped into the following six categories.
Invisibility cloaking without superluminal propagation
Energy Technology Data Exchange (ETDEWEB)
Perczel, Janos; Leonhardt, Ulf [School of Physics and Astronomy, University of St Andrews, North Haugh, St Andrews KY16 9SS (United Kingdom); Tyc, Tomas, E-mail: jp394@st-andrews.ac.uk, E-mail: tomtyc@physics.muni.cz, E-mail: ulf@st-andrews.ac.uk [Faculty of Science, Kotlarska 2 and Faculty of Informatics, Botanicka 68a, Masaryk University, 61137 Brno (Czech Republic)
2011-08-15
Conventional cloaking based on Euclidean transformation optics requires that the speed of light should tend to infinity on the inner surface of the cloak. Non-Euclidean cloaking still needs media with superluminal propagation. Here we show by giving an example that this is no longer necessary.
Propagating Class and Method Combination
DEFF Research Database (Denmark)
Ernst, Erik
1999-01-01
number of implicit combinations. For example, it is possible to specify separate aspects of a family of classes, and then combine several aspects into a full-fledged class family. The combination expressions would explicitly combine whole-family aspects, and by propagation implicitly combine the aspects...
The Monitoring and Affinity Purification of Proteins Using Dual Tags with Tetracysteine Motifs
Giannone, Richard J.; Liu, Yie; Wang, Yisong
Identification and characterization of protein-protein interaction networks is essential for the elucidation of biochemical mechanisms and cellular function. Affinity purification in combination with liquid chromatography-tandem mass spectrometry (LC-MS/MS) has emerged as a very powerful tactic for the identification of specific protein-protein interactions. In this chapter, we describe a comprehensive methodology that uses our recently developed dual-tag affinity purification system for the enrichment and identification of mammalian protein complexes. The protocol covers a series of separate but sequentially related techniques focused on the facile monitoring and purification of a dual-tagged protein of interest and its interacting partners via a system built with tetracysteine motifs and various combinations of affinity tags. Using human telomeric repeat binding factor 2 (TRF2) as an example, we demonstrate the power of the system in terms of bait protein recovery after dual-tag affinity purification, detection of bait protein subcellular localization and expression, and successful identification of known and potentially novel TRF2 interacting proteins. Although the protocol described here has been optimized for the identification and characterization of TRF2-associated proteins, it is, in principle, applicable to the study of any other mammalian protein complexes that may be of interest to the research community.
Chen, Guilin; Huang, Bill X; Guo, Mingquan
2018-05-21
Medicinal plants have played an important role in maintaining human health for thousands of years. However, the interactions between the active components in medicinal plants and some certain biological targets during a disease are still unclear in most cases. To conduct the high-throughput screening for small active molecules that can interact with biological targets, which is of great theoretical significance and practical value. The ultrafiltration mass spectrometry (UF-LC/MS) is a powerful bio-analytical method by combining affinity ultrafiltration and liquid chromatography-mass spectrometry (LC/MS), which could rapidly screen and identify small active molecules that bind to biological targets of interest at the same time. Compared with other analytical methods, affinity UF-LC/MS has the characteristics of fast, sensitive and high throughput, and is especially suitable for the complicated extracts of medicinal plants. In this review, the basic principle, characteristics and some most recent challenges in UF-LC/MS have been demonstrated. Meanwhile, the progress and applications of affinity UF-LC/MS in the discovery of the active components from natural medicinal plants and the interactions between small molecules and biological target proteins are also briefly summarised. In addition, the future directions for UF-LC/MS are also prospected. Affinity UF-LC/MS is a powerful tool in studies on the interactions between small active molecules and biological protein targets, especially in the high-throughput screening of active components from the natural medicinal plants. Copyright © 2018 John Wiley & Sons, Ltd.
Electron affinity and excited states of methylglyoxal
Dauletyarov, Yerbolat; Dixon, Andrew R.; Wallace, Adam A.; Sanov, Andrei
2017-07-01
Using photoelectron imaging spectroscopy, we characterized the anion of methylglyoxal (X2A″ electronic state) and three lowest electronic states of the neutral methylglyoxal molecule: the closed-shell singlet ground state (X1A'), the lowest triplet state (a3A″), and the open-shell singlet state (A1A″). The adiabatic electron affinity (EA) of the ground state, EA(X1A') = 0.87(1) eV, spectroscopically determined for the first time, compares to 1.10(2) eV for unsubstituted glyoxal. The EAs (adiabatic attachment energies) of two excited states of methylglyoxal were also determined: EA(a3A″) = 3.27(2) eV and EA(A1A″) = 3.614(9) eV. The photodetachment of the anion to each of these two states produces the neutral species near the respective structural equilibria; hence, the a3A″ ← X2A″ and A1A″ ← X2A″ photodetachment transitions are dominated by intense peaks at their respective origins. The lowest-energy photodetachment transition, on the other hand, involves significant geometry relaxation in the X1A' state, which corresponds to a 60° internal rotation of the methyl group, compared to the anion structure. Accordingly, the X1A' ← X2A″ transition is characterized as a broad, congested band, whose vertical detachment energy, VDE = 1.20(4) eV, significantly exceeds the adiabatic EA. The experimental results are in excellent agreement with the ab initio predictions using several equation-of-motion methodologies, combined with coupled-cluster theory.
Electron affinities of atoms, molecules, and radicals
International Nuclear Information System (INIS)
Christodoulides, A.A.; McCorkle, D.L.; Christophorou, L.G.
1982-01-01
We review briefly but comprehensively the theoretical, semiempirical and experimental methods employed to determine electron affinities (EAs) of atoms, molecules and radicals, and summarize the EA data obtained by these methods. The detailed processes underlying the principles of the experimental methods are discussed very briefly. It is, nonetheless, instructive to recapitulate the definition of EA and those of the related quantities, namely, the vertical detachment energy, VDE, and the vertical attachment energy, VAE. The EA of an atom is defined as the difference in total energy between the ground state of the neutral atom (plus the electron at rest at infinity) and its negative ion. The EA of a molecule is defined as the difference in energy between the neutral molecule plus an electron at rest at infinity and the molecular negative ion when both, the neutral molecules and the negative ion, are in their ground electronic, vibrational and rotational states. The VDE is defined as the minimum energy required to eject the electron from the negative ion (in its ground electronic and nuclear state) without changing the internuclear separation; since the vertical transition may leave the neutral molecule in an excited vibrational/rotational state, the VDE, although the same as the EA for atoms is, in general, different (larger than), from the EA for molecules. Similarly, the VAE is defined as the difference in energy between the neutral molecule in its ground electronic, vibrational and rotational states plus an electron at rest at infinity and the molecular negative ion formed by addition of an electron to the neutral molecule without allowing a change in the intermolecular separation of the constituent nuclei; it is a quantity appropriate to those cases where the lowest negative ion state lies above the ground states of the neutral species and is less or equal to EA
Convulsant bicuculline modifies CNS muscarinic receptor affinity
Directory of Open Access Journals (Sweden)
Rodríguez de Lores Arnaiz Georgina
2006-04-01
Full Text Available Abstract Background Previous work from this laboratory has shown that the administration of the convulsant drug 3-mercaptopropionic acid (MP, a GAD inhibitor, modifies not only GABA synthesis but also binding of the antagonist [3H]-quinuclidinyl benzilate ([3H]-QNB to central muscarinic receptors, an effect due to an increase in affinity without modifications in binding site number. The cholinergic system has been implicated in several experimental epilepsy models and the ability of acetylcholine to regulate neuronal excitability in the neocortex is well known. To study the potential relationship between GABAergic and cholinergic systems with seizure activity, we analyzed the muscarinic receptor after inducing seizure by bicuculline (BIC, known to antagonize the GABA-A postsynaptic receptor subtype. Results We analyzed binding of muscarinic antagonist [3H]-QNB to rat CNS membranes after i.p. administration of BIC at subconvulsant (1.0 mg/kg and convulsant (7.5 mg/kg doses. Subconvulsant BIC dose failed to develop seizures but produced binding alteration in the cerebellum and hippocampus with roughly 40% increase and 10% decrease, respectively. After convulsant BIC dose, which invariably led to generalized tonic-clonic seizures, binding increased 36% and 15% to cerebellar and striatal membranes respectively, but decreased 12% to hippocampal membranes. Kd value was accordingly modified: with the subconvulsant dose it decreased 27% in cerebellum whereas it increased 61% in hippocampus; with the convulsant dose, Kd value decreased 33% in cerebellum but increased 85% in hippocampus. No change in receptor number site was found, and Hill number was invariably close to unity. Conclusion Results indicate dissimilar central nervous system area susceptibility of muscarinic receptor to BIC. Ligand binding was modified not only by a convulsant BIC dose but also by a subconvulsant dose, indicating that changes are not attributable to the seizure process
Interactive Sound Propagation using Precomputation and Statistical Approximations
Antani, Lakulish
Acoustic phenomena such as early reflections, diffraction, and reverberation have been shown to improve the user experience in interactive virtual environments and video games. These effects arise due to repeated interactions between sound waves and objects in the environment. In interactive applications, these effects must be simulated within a prescribed time budget. We present two complementary approaches for computing such acoustic effects in real time, with plausible variation in the sound field throughout the scene. The first approach, Precomputed Acoustic Radiance Transfer, precomputes a matrix that accounts for multiple acoustic interactions between all scene objects. The matrix is used at run time to provide sound propagation effects that vary smoothly as sources and listeners move. The second approach couples two techniques---Ambient Reverberance, and Aural Proxies---to provide approximate sound propagation effects in real time, based on only the portion of the environment immediately visible to the listener. These approaches lie at different ends of a space of interactive sound propagation techniques for modeling sound propagation effects in interactive applications. The first approach emphasizes accuracy by modeling acoustic interactions between all parts of the scene; the second approach emphasizes efficiency by only taking the local environment of the listener into account. These methods have been used to efficiently generate acoustic walkthroughs of architectural models. They have also been integrated into a modern game engine, and can enable realistic, interactive sound propagation on commodity desktop PCs.
Maximum nondiffracting propagation distance of aperture-truncated Airy beams
Chu, Xingchun; Zhao, Shanghong; Fang, Yingwu
2018-05-01
Airy beams have called attention of many researchers due to their non-diffracting, self-healing and transverse accelerating properties. A key issue in research of Airy beams and its applications is how to evaluate their nondiffracting propagation distance. In this paper, the critical transverse extent of physically realizable Airy beams is analyzed under the local spatial frequency methodology. The maximum nondiffracting propagation distance of aperture-truncated Airy beams is formulated and analyzed based on their local spatial frequency. The validity of the formula is verified by comparing the maximum nondiffracting propagation distance of an aperture-truncated ideal Airy beam, aperture-truncated exponentially decaying Airy beam and exponentially decaying Airy beam. Results show that the formula can be used to evaluate accurately the maximum nondiffracting propagation distance of an aperture-truncated ideal Airy beam. Therefore, it can guide us to select appropriate parameters to generate Airy beams with long nondiffracting propagation distance that have potential application in the fields of laser weapons or optical communications.
Thermal-depth matching in dynamic scene based on affine projection and feature registration
Wang, Hongyu; Jia, Tong; Wu, Chengdong; Li, Yongqiang
2018-03-01
This paper aims to study the construction of 3D temperature distribution reconstruction system based on depth and thermal infrared information. Initially, a traditional calibration method cannot be directly used, because the depth and thermal infrared camera is not sensitive to the color calibration board. Therefore, this paper aims to design a depth and thermal infrared camera calibration board to complete the calibration of the depth and thermal infrared camera. Meanwhile a local feature descriptors in thermal and depth images is proposed. The belief propagation matching algorithm is also investigated based on the space affine transformation matching and local feature matching. The 3D temperature distribution model is built based on the matching of 3D point cloud and 2D thermal infrared information. Experimental results show that the method can accurately construct the 3D temperature distribution model, and has strong robustness.
Selective high-affinity polydentate ligands and methods of making such
Energy Technology Data Exchange (ETDEWEB)
Denardo, Sally J.; Denardo, Gerald L.; Balhorn, Rodney L.
2018-02-06
This invention provides novel polydentate selective high affinity ligands (SHALs) that can be used in a variety of applications in a manner analogous to the use of antibodies. SHALs typically comprise a multiplicity of ligands that each bind different region son the target molecule. The ligands are joined directly or through a linker thereby forming a polydentate moiety that typically binds the target molecule with high selectivity and avidity.
Characteristics of high affinity and low affinity adenosine binding sites in human cerebral cortex
International Nuclear Information System (INIS)
John, D.; Fox, I.V.
1986-01-01
The binding characteristics of human brain cortical membrane fractions were evaluated to test the hypothesis that there are A 1 and A 2 adenosine binding sites. The ligands used were 2-chloro(8- 3 H) adenosine and N 6 -(adenine-2, 8- 3 H) cyclohexayladenosine. Binding of chloroadenosine to human brain cortical membranes was time dependent, reversible and concentration dependent. The kinetic constant determinations from binding studies of the adenosine receptor are presented. Utilizing tritium-cyclohexyladenosine as ligand the authors observed evidence for a high affinity binding site in human brain cortical membranes with a kd of 5 nM
Drone-borne GPR design: Propagation issues
Chandra, Madhu; Tanzi, Tullio Joseph
2018-01-01
In this paper, we shall address the electromagnetic wave propagation issues that are critical to determining the feasibility of a drone-borne ground-penetrating radar sensor for humanitarian applications, particularly in the context of disaster management. Frequency- and polarization-dependent scattering, attenuation and dispersion of radar signals penetrating into the sub-surface region will determine the applicability of a drone-mounted radar sensor capable of registering radar echoes for observing and monitoring sub-surface features. The functionality of the radar will thus be assessed depending on key radar parameters that include the central radar frequency, the modulation depth, and the mode of radar operation (pulsed FM, FM-CW), the antenna type, the available power-budget. In the analysis to be presented, the radar equation, together with the aforementioned propagation effects, will be used to simulate the signal strength of radar echoes under different conditions arising from the chosen key-radar parameters and the assumed physical properties of the sub-surface earth medium. The analysis to be presented will indicate whether or not the drone-borne ground-penetrating radar is a feasible system and if it could be constructed with the technologies available today. Taking into account the strict constraints involved to design drone applications for Public Protection and Disaster Relief (PPDR), the ideas developed hereafter are both prospective and exploratory. The objective is to see if a solution can be found in the near future. xml:lang="fr" Dans l'analyse présentée, l'équation radar, ainsi que les effets de propagation susmentionnés, serviront à simuler la puissance du signal des échos radar sous différentes conditions découlant des paramètres clés choisis et les propriétés physiques du milieu sous la surface. L'étude a pour objectif de démontrer si le système est réalisable et s'il peut être construit avec les technologies disponibles
50 CFR 21.30 - Raptor propagation permits.
2010-10-01
... (CONTINUED) TAKING, POSSESSION, TRANSPORTATION, SALE, PURCHASE, BARTER, EXPORTATION, AND IMPORTATION OF... take, possess, transport, import, purchase, barter, or offer to sell, purchase, or barter any raptor... of the applicant's experience with raptor propagation or handling raptors; (4) A description of each...
Propagation of waves in a multicomponent plasma having charged ...
Indian Academy of Sciences (India)
Propagation of waves in a multicomponent plasma having charged dust particles has been investigated by various authors in recent times as the presence of charged dust grains give rise to a new kind of modes called dust modes and it has wide applications in magneto- sphere and space plasma [1–3]. In fact, Rao et al [4] ...
Propagation of field disturbances in Yang-Mills theory
International Nuclear Information System (INIS)
De Lorenci, Vitorio A.; Li Shiyuan
2008-01-01
The propagation of field disturbances is examined in the context of the effective Yang-Mills Lagrangian, which is intended to be applied to QCD systems. It is shown that birefringence phenomena can occur in such systems provided some restrictive conditions, as causality, are fulfilled. Possible applications to phenomenology are addressed.
PIV tracer behavior on propagating shock fronts
International Nuclear Information System (INIS)
Glazyrin, Fyodor N; Mursenkova, Irina V; Znamenskaya, Irina A
2016-01-01
The present work was aimed at the quantitative particle image velocimetry (PIV) measurement of a velocity field near the front of a propagating shock wave and the study of the dynamics of liquid tracers crossing the shock front. For this goal, a shock tube with a rectangular cross-section (48 × 24 mm) was used. The flat shock wave with Mach numbers M = 1.4–2.0 propagating inside the tube channel was studied as well as an expanding shock wave propagating outside the channel with M = 1.2–1.8 at its main axis. The PIV imaging of the shock fronts was carried out with an aerosol of dioctyl sebacate (DEHS) as tracer particles. The pressures of the gas in front of the shock waves studied ranged from 0.013 Mpa to 0.1 MPa in the series of experiments. The processed PIV data, compared to the 1D normal shock theory, yielded consistent values of wake velocity immediately behind the plain shock wave. Special attention was paid to the blurring of the velocity jump on the shock front due to the inertial particle lag and peculiarities of the PIV technique. A numerical algorithm was developed for analysis and correction of the PIV data on the shock fronts, based on equations of particle-flow interaction. By application of this algorithm, the effective particle diameter of the DEHS aerosol tracers was estimated as 1.03 ± 0.12 μm. A number of different formulations for particle drag were tested with this algorithm, with varying success. The results show consistency with previously reported experimental data obtained for cases of stationary shock waves. (paper)
Numerical Algorithms for Precise and Efficient Orbit Propagation and Positioning
Bradley, Ben K.
Motivated by the growing space catalog and the demands for precise orbit determination with shorter latency for science and reconnaissance missions, this research improves the computational performance of orbit propagation through more efficient and precise numerical integration and frame transformation implementations. Propagation of satellite orbits is required for astrodynamics applications including mission design, orbit determination in support of operations and payload data analysis, and conjunction assessment. Each of these applications has somewhat different requirements in terms of accuracy, precision, latency, and computational load. This dissertation develops procedures to achieve various levels of accuracy while minimizing computational cost for diverse orbit determination applications. This is done by addressing two aspects of orbit determination: (1) numerical integration used for orbit propagation and (2) precise frame transformations necessary for force model evaluation and station coordinate rotations. This dissertation describes a recently developed method for numerical integration, dubbed Bandlimited Collocation Implicit Runge-Kutta (BLC-IRK), and compare its efficiency in propagating orbits to existing techniques commonly used in astrodynamics. The BLC-IRK scheme uses generalized Gaussian quadratures for bandlimited functions. It requires significantly fewer force function evaluations than explicit Runge-Kutta schemes and approaches the efficiency of the 8th-order Gauss-Jackson multistep method. Converting between the Geocentric Celestial Reference System (GCRS) and International Terrestrial Reference System (ITRS) is necessary for many applications in astrodynamics, such as orbit propagation, orbit determination, and analyzing geoscience data from satellite missions. This dissertation provides simplifications to the Celestial Intermediate Origin (CIO) transformation scheme and Earth orientation parameter (EOP) storage for use in positioning and
Methods for determining the genetic affinity of microorganisms and viruses
Fox, George E. (Inventor); Willson, III, Richard C. (Inventor); Zhang, Zhengdong (Inventor)
2012-01-01
Selecting which sub-sequences in a database of nucleic acid such as 16S rRNA are highly characteristic of particular groupings of bacteria, microorganisms, fungi, etc. on a substantially phylogenetic tree. Also applicable to viruses comprising viral genomic RNA or DNA. A catalogue of highly characteristic sequences identified by this method is assembled to establish the genetic identity of an unknown organism. The characteristic sequences are used to design nucleic acid hybridization probes that include the characteristic sequence or its complement, or are derived from one or more characteristic sequences. A plurality of these characteristic sequences is used in hybridization to determine the phylogenetic tree position of the organism(s) in a sample. Those target organisms represented in the original sequence database and sufficient characteristic sequences can identify to the species or subspecies level. Oligonucleotide arrays of many probes are especially preferred. A hybridization signal can comprise fluorescence, chemiluminescence, or isotopic labeling, etc.; or sequences in a sample can be detected by direct means, e.g. mass spectrometry. The method's characteristic sequences can also be used to design specific PCR primers. The method uniquely identifies the phylogenetic affinity of an unknown organism without requiring prior knowledge of what is present in the sample. Even if the organism has not been previously encountered, the method still provides useful information about which phylogenetic tree bifurcation nodes encompass the organism.
ODE/IM correspondence and modified affine Toda field equations
Energy Technology Data Exchange (ETDEWEB)
Ito, Katsushi; Locke, Christopher
2014-08-15
We study the two-dimensional affine Toda field equations for affine Lie algebra g{sup ^} modified by a conformal transformation and the associated linear equations. In the conformal limit, the associated linear problem reduces to a (pseudo-)differential equation. For classical affine Lie algebra g{sup ^}, we obtain a (pseudo-)differential equation corresponding to the Bethe equations for the Langlands dual of the Lie algebra g, which were found by Dorey et al. in study of the ODE/IM correspondence.
Realization of Robertson-Walker spacetimes as affine hypersurfaces
International Nuclear Information System (INIS)
Chen Bangyen
2007-01-01
Due to the growing interest in embeddings of spacetimes in higher dimensional spaces, we consider a special type of embedding. We prove that Robertson-Walker spacetimes can be embedded as centroaffine hypersurfaces and graph hypersurfaces in some affine spaces in such a way that the induced relative metrics are exactly the Lorentzian metrics on the Robertson-Walker spacetimes. Such realizations allow us to view Robertson-Walker spacetimes and their submanifolds as affine submanifolds in a natural way. Consequently, our realizations make it possible to apply the tools of affine differential geometry to study Robertson-Walker spacetimes and their submanifolds
Volatility Components, Affine Restrictions and Non-Normal Innovations
DEFF Research Database (Denmark)
Christoffersen, Peter; Jacobs, Kris; Dorian, Christian
Recent work by Engle and Lee (1999) shows that allowing for long-run and short-run components greatly enhances a GARCH model's ability fit daily equity return dynamics. Using the risk-neutralization in Duan (1995), we assess the option valuation performance of the Engle-Lee model and compare...... models to four conditionally non-normal versions. As in Hsieh and Ritchken (2005), we find that non-affine models dominate affine models both in terms of fitting return and in terms of option valuation. For the affine models we find strong evidence in favor of the component structure for both returns...
The topological entropy of iterated piecewise affine maps is uncomputable
Directory of Open Access Journals (Sweden)
Pascal Koiran
2001-12-01
Full Text Available We show that it is impossible to compute (or even to approximate the topological entropy of a continuous piecewise affine function in dimension four. The same result holds for saturated linear functions in unbounded dimension. We ask whether the topological entropy of a piecewise affine function is always a computable real number, and conversely whether every non-negative computable real number can be obtained as the topological entropy of a piecewise affine function. It seems that these two questions are also open for cellular automata.
Accurate determination of the oxidative phosphorylation affinity for ADP in isolated mitochondria.
Directory of Open Access Journals (Sweden)
Gilles Gouspillou
Full Text Available BACKGROUND: Mitochondrial dysfunctions appear strongly implicated in a wide range of pathologies. Therefore, there is a growing need in the determination of the normal and pathological integrated response of oxidative phosphorylation to cellular ATP demand. The present study intends to address this issue by providing a method to investigate mitochondrial oxidative phosphorylation affinity for ADP in isolated mitochondria. METHODOLOGY/PRINCIPAL FINDINGS: The proposed method is based on the simultaneous monitoring of substrate oxidation (determined polarographically and phosphorylation (determined using the glucose-hexokinase glucose-6-phosphate dehydrogenase-NADP(+ enzymatic system rates, coupled to the determination of actual ADP and ATP concentrations by bioluminescent assay. This enzymatic system allows the study of oxidative phosphorylation during true steady states in a wide range of ADP concentrations. We demonstrate how the application of this method allows an accurate determination of mitochondrial affinity for ADP from both oxidation (K(mVox and phosphorylation (K(mVp rates. We also demonstrate that determination of K(mVox leads to an important overestimation of the mitochondrial affinity for ADP, indicating that mitochondrial affinity for ADP should be determined using phosphorylation rate. Finally, we show how this method allows the direct and precise determination of the mitochondrial coupling efficiency. Data obtained from rat skeletal muscle and liver mitochondria illustrate the discriminating capabilities of this method. CONCLUSIONS/SIGNIFICANCE: Because the proposed method allows the accurate determination of mitochondrial oxidative phosphorylation affinity for ADP in isolated mitochondria, it also opens the route to a better understanding of functional consequences of mitochondrial adaptations/dysfunctions arising in various physiological/pathophysiological conditions.
Uncertainty Propagation in Monte Carlo Depletion Analysis
International Nuclear Information System (INIS)
Shim, Hyung Jin; Kim, Yeong-il; Park, Ho Jin; Joo, Han Gyu; Kim, Chang Hyo
2008-01-01
A new formulation aimed at quantifying uncertainties of Monte Carlo (MC) tallies such as k eff and the microscopic reaction rates of nuclides and nuclide number densities in MC depletion analysis and examining their propagation behaviour as a function of depletion time step (DTS) is presented. It is shown that the variance of a given MC tally used as a measure of its uncertainty in this formulation arises from four sources; the statistical uncertainty of the MC tally, uncertainties of microscopic cross sections and nuclide number densities, and the cross correlations between them and the contribution of the latter three sources can be determined by computing the correlation coefficients between the uncertain variables. It is also shown that the variance of any given nuclide number density at the end of each DTS stems from uncertainties of the nuclide number densities (NND) and microscopic reaction rates (MRR) of nuclides at the beginning of each DTS and they are determined by computing correlation coefficients between these two uncertain variables. To test the viability of the formulation, we conducted MC depletion analysis for two sample depletion problems involving a simplified 7x7 fuel assembly (FA) and a 17x17 PWR FA, determined number densities of uranium and plutonium isotopes and their variances as well as k ∞ and its variance as a function of DTS, and demonstrated the applicability of the new formulation for uncertainty propagation analysis that need be followed in MC depletion computations. (authors)
A general approach to error propagation
International Nuclear Information System (INIS)
Sanborn, J.B.
1987-01-01
A computational approach to error propagation is explained. It is shown that the application of the first-order Taylor theory to a fairly general expression representing an inventory or inventory-difference quantity leads naturally to a data structure that is useful for structuring error-propagation calculations. This data structure incorporates six types of data entities: (1) the objects in the material balance, (2) numerical parameters that describe these objects, (3) groups or sets of objects, (4) the terms which make up the material-balance equation, (5) the errors or sources of variance and (6) the functions or subroutines that represent Taylor partial derivatives. A simple algorithm based on this data structure can be defined using formulas that are sums of squares of sums. The data structures and algorithms described above have been implemented as computer software in FORTRAN for IBM PC-type machines. A free-form data-entry format allows users to separate data as they wish into separate files and enter data using a text editor. The program has been applied to the computation of limits of error for inventory differences (LEIDs) within the DOE complex. 1 ref., 3 figs
Simulation of ultrasound propagation in bone
Kaufman, Jonathan J.; Luo, Gangming; Siffert, Robert S.
2004-10-01
Ultrasound has been proposed as a means to noninvasively assess bone and, particularly, bone strength and fracture risk, as for example in osteoporosis. Because strength is a function of both mineral density and architecture, ultrasound has the potential to provide more accurate measurement of bone integrity than, for example, with x-ray absorptiometric methods. Although some of this potential has already been realized-a number of clinical devices are presently available-there is still much that is unknown regarding the interaction of ultrasound with bone. Because of the inherent complexity of the propagation medium, few analytic solutions exist with practical application. For this reason, ultrasound simulation techniques have been developed and applied to a number of different problems of interest in ultrasonic bone assessment. Both 2D and 3D simulation results will be presented, including the effects of architecture and density on the received waveform, propagation effects of both cortical and trabecular bone, and the relative contributions of scattering and absorption to attenuation in trabecular bone. The results of these simulation studies should lead to improved understanding and ultimately to more effective clinical devices for ultrasound bone assessment. [This work was supported by The Carroll and Milton Petrie Foundation and by SBIR Grant No. 1R43RR16750 from the National Center for Research Resources of the NIH.
VEGETATIVE PROPAGATION OF Schizolobium amazonicum BY cutting
Directory of Open Access Journals (Sweden)
Poliana Coqueiro Dias
2015-09-01
Full Text Available The aim of this study was to develop a methodology for the vegetative propagation of paricá (Schizolobium amazonicum through cutting, evaluating the effect of IBA (0, 8000, 16000 and 32,000 mg.L-1 on rooting of apical and intermediate stakes. The base of the cuttings were dipped in IBA solution for 10 seconds and then were staked in polyethylene tubes of 110 cm³, filled with organic substrate (Bioplant®. The irrigation of the seedlings was carried out by means of a nebulization system with a uniform flow rate of 7 L.h-1. After 40 days, were evaluated: percentage of survival, rooting percentage, percentage of roots observed at the lower end of the plastic tube, average number of roots, length of roots, presence of calluses, vigor and root dry matter. The results for the characteristics evaluated, with emphasis on survival, showed the highest averages were obtained at intermediate stakes, regardless of the dose of IBA. The highest rooting percentage, root number, length and dry mass of roots, in both types of cuttings was obtained with the highest dose tested of AIB (32,000 mg.L-1. Based on these results, it is concluded that the technique of cutting associated with application of plant growth regulators can be used for vegetative propagation of S. amazonicum.
The nature of the S-linear algebra: For an S-propagator
Strati, Francesco
2012-01-01
This paper is intended to analyse an S-linear algebra’s application so as to build an S-propagator's concept. In particular we shall study a semi -deterministic propagator via superposition (it is intended the Carfì ́s notion of superposition).
The optics of gyrotropic crystals in the field of two counter-propagating ultrasound waves
International Nuclear Information System (INIS)
Gevorgyan, A H; Harutyunyan, E M; Hovhannisyan, M A; Matinyan, G K
2014-01-01
We consider oblique light propagation through a layer of a gyrotropic crystal in the field of two counter-propagating ultrasound waves. The problem is solved by Ambartsumyan's layer addition modified method. The results of the reflection spectra for different values of the problem parameters are presented. The possibilities of such system applications are discussed.
Propagation loss model comparisons on selected scenarios from the Weston memorial workshop
Sertlek, H.O.; Ainslie, M.A.
2013-01-01
The accurate and stable calculation of underwater acoustic propagation is needed for applications such as sonar performance prediction, noise mapping and acoustic communication. In this work, some widely used acoustic propagation models, based on different methods such as normal mode, ray tracing,
The propagator of stochastic electrodynamics
Cavalleri, G.
1981-01-01
The "elementary propagator" for the position of a free charged particle subject to the zero-point electromagnetic field with Lorentz-invariant spectral density ~ω3 is obtained. The nonstationary process for the position is solved by the stationary process for the acceleration. The dispersion of the position elementary propagator is compared with that of quantum electrodynamics. Finally, the evolution of the probability density is obtained starting from an initial distribution confined in a small volume and with a Gaussian distribution in the velocities. The resulting probability density for the position turns out to be equal, to within radiative corrections, to ψψ* where ψ is the Kennard wave packet. If the radiative corrections are retained, the present result is new since the corresponding expression in quantum electrodynamics has not yet been found. Besides preceding quantum electrodynamics for this problem, no renormalization is required in stochastic electrodynamics.
Interprocedural Analysis with Lazy Propagation
DEFF Research Database (Denmark)
Jensen, Simon Holm; Møller, Anders; Thiemann, Peter
2010-01-01
We propose lazy propagation as a technique for flow- and context-sensitive interprocedural analysis of programs with objects and first-class functions where transfer functions may not be distributive. The technique is described formally as a systematic modification of a variant of the monotone fr...... framework and its theoretical properties are shown. It is implemented in a type analysis tool for JavaScript where it results in a significant improvement in performance....
Crack propagation in dynamic thermoelasticity
International Nuclear Information System (INIS)
Bui, H.D.
1980-01-01
We study the singular thermoelastic fields near the crack tip, in the linear strain assumption. The equations are coupled and non linear. The asymptotic expansions of the displacement and the temperature are given for the first and the second order. It is shown that the temperature is singular when the crack propagates. However, this field does not change the dominant singularity of the mechanical field which is the same as that obtained in the theory of isothermal elasticity [fr
Information Propagation on Permissionless Blockchains
Ersoy, Oguzhan; Ren, Zhijie; Erkin, Zekeriya; Lagendijk, Reginald L.
2017-01-01
Blockchain technology, as a decentralized and non-hierarchical platform, has the potential to replace centralized systems. Yet, there are several challenges inherent in the blockchain structure. One of the deficiencies of the existing blockchains is a convenient information propagation technique enhancing incentive-compatibility and bandwidth efficiency. The transition from a centralized system into distributed one brings along game theoretical concerns. Especially for the permissionless bloc...
Quantum noise and superluminal propagation
International Nuclear Information System (INIS)
Segev, Bilha; Milonni, Peter W.; Babb, James F.; Chiao, Raymond Y.
2000-01-01
Causal ''superluminal'' effects have recently been observed and discussed in various contexts. The question arises whether such effects could be observed with extremely weak pulses, and what would prevent the observation of an ''optical tachyon.'' Aharonov, Reznik, and Stern (ARS) [Phys. Rev. Lett. 81, 2190 (1998)] have argued that quantum noise will preclude the observation of a superluminal group velocity when the pulse consists of one or a few photons. In this paper we reconsider this question both in a general framework and in the specific example, suggested by Chiao, Kozhekin, and Kurizki (CKK) [Phys. Rev. 77, 1254 (1996)], of off-resonant, short-pulse propagation in an optical amplifier. We derive in the case of the amplifier a signal-to-noise ratio that is consistent with the general ARS conclusions when we impose their criteria for distinguishing between superluminal propagation and propagation at the speed c. However, results consistent with the semiclassical arguments of CKK are obtained if weaker criteria are imposed, in which case the signal can exceed the noise without being ''exponentially large.'' We show that the quantum fluctuations of the field considered by ARS are closely related to superfluorescence noise. More generally, we consider the implications of unitarity for superluminal propagation and quantum noise and study, in addition to the complete and truncated wave packets considered by ARS, the residual wave packet formed by their difference. This leads to the conclusion that the noise is mostly luminal and delayed with respect to the superluminal signal. In the limit of a very weak incident signal pulse, the superluminal signal will be dominated by the noise part, and the signal-to-noise ratio will therefore be very small. (c) 2000 The American Physical Society
Propagation functions in pseudoparticle fields
International Nuclear Information System (INIS)
Brown, L.S.; Carlitz, R.D.; Creamer, D.B.; Lee, C.
1978-01-01
The Green's functions for massless spinor and vector particles propagating in a self-dual but otherwise arbitrary non-Abelian gauge field are shown to be completely determined by the corrresponding Green's functions of scalar particles. Simple, explicit algebraic expressions are constructed for the scalar Green's functions of isospin-1/2 and isospin-1 particles in the self-dual field of a configuration of n pseudoparticles described by 5n arbitrary parameters
Propagation calculation for reactor cases
Energy Technology Data Exchange (ETDEWEB)
Yang Yanhua [School of Power and Energy Engineering, Shanghai Jiao Tong Univ., Shanghai (China); Moriyama, K.; Maruyama, Y.; Nakamura, H.; Hashimoto, K. [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment
2000-11-01
The propagation of steam explosion for real reactor geometry and conditions are investigated by using the computer code JASMINE-pro. The ex-vessel steam explosion is considered, which is described as follow: during the accident of reactor core meltdown, the molten core melts a hole at the bottom of reactor vessel and causes the higher temperature core fuel being leaked into the water pool below reactor vessel. During the melt-water mixing interaction process, the high temperature melt evaporates the cool water at an extreme high rate and might induce a steam explosion. A steam explosion could experience first the premixing phase and then the propagation explosion phase. For a propagation calculation, we should know the information about the initial fragmentation time, the total melt mass, premixing region size, initial void fraction and distribution of the melt volume fraction, and so on. All the initial conditions used in this calculation are based on analyses from some simple assumptions and the observation from the experiments. The results show that the most important parameter for the initial condition of this phase is the total mass and its initial distribution. This gives the requirement for a premixing calculation. On the other hand, for higher melt volume fraction case, the fragmentation is strong so that the local pressure can exceed over the EOS maximum pressure of the code, which lead to the incorrect calculation or divergence of the calculation. (Suetake, M.)
Propagating separable equalities in an MDD store
DEFF Research Database (Denmark)
Hadzic, Tarik; Hooker, John N.; Tiedemann, Peter
2008-01-01
We present a propagator that achieves MDD consistency for a separable equality over an MDD (multivalued decision diagram) store in pseudo-polynomial time. We integrate the propagator into a constraint solver based on an MDD store introduced in [1]. Our experiments show that the new propagator pro...... provides substantial computational advantage over propagation of two inequality constraints, and that the advantage increases when the maximum width of the MDD store increases....
International Nuclear Information System (INIS)
Bramantya, M A; Sawada, T; Motozawa, M
2010-01-01
Ultrasonic propagation velocity in a magnetic fluid (MF) and magnetorheological fluid (MRF) changes with the application of an external magnetic field. The formation of clustering structures inside the MF and MRF clearly has an influence on the ultrasonic propagation velocity. Therefore, we propose a qualitative analysis of these structures by measuring properties of ultrasonic propagation. Since MF and MRF are opaque, non-contact inspection using the ultrasonic technique can be very useful for analyzing the inner structures of MF and MRF. In this study, we measured ultrasonic propagation velocity in a hydrocarbon-based MF and MRF precisely. Based on these results, the clustering structures of these fluids are analyzed experimentally in terms of elapsed time dependence and the effect of external magnetic field strength. The results reveal hysteresis and anisotropy in the ultrasonic propagation velocity. We also discuss differences of ultrasonic propagation velocity between MF and MRF.
Fire Propagation Tracing Model in the Explicit Treatment of Events of Fire PSA
International Nuclear Information System (INIS)
Lim, Ho Gon; Han, Sang Hoon; Yang, Jun Eon
2010-01-01
The fire propagation model in a fire PSA has not been considered analytically instead a simplified analyst's intuition was used to consider the fire propagation path. A fire propagation equation is developed to trace all the propagation paths in the fire area in which a zone is defined to identify various fire ignition sources. An initiation of fire is assumed to take place in a zone. Then, the propagation is modeled with a Boolean equation. Since the explicit fire PSA modeling requires an exclusive event set to sum up the..., exclusive event sets are derived from the fire propagation equation. As an example, we show the exclusive set for a 2x3 rectangular fire zone. Also, the applicability the developed fire equation is discussed when the number of zone increases including the limitation of the explicit fire PSA modeling method
Fast Heat Pulse Propagation by Turbulence Spreading
DEFF Research Database (Denmark)
Naulin, Volker; Juul Rasmussen, Jens; Mantica, Paola
2009-01-01
The propagation of a cold pulse initiated by edge cooling in JET is compared to propagation of the heat wave originating from a modulation of the heating source roughly at mid radius. It is found that the propagation of the cold pulse is by far faster than what could be predicted on the basis of ...
Semiclassical scalar propagators in curved backgrounds: Formalism and ambiguities
International Nuclear Information System (INIS)
Grain, J.; Barrau, A.
2007-01-01
The phenomenology of quantum systems in curved space-times is among the most fascinating fields of physics, allowing--often at the gedankenexperiment level--constraints on tentative theories of quantum gravity. Determining the dynamics of fields in curved backgrounds remains, however, a complicated task because of the highly intricate partial differential equations involved, especially when the space metric exhibits no symmetry. In this article, we provide--in a pedagogical way--a general formalism to determine this dynamics at the semiclassical order. To this purpose, a generic expression for the semiclassical propagator is computed and the equation of motion for the probability four-current is derived. Those results underline a direct analogy between the computation of the propagator in general relativistic quantum mechanics and the computation of the propagator for stationary systems in nonrelativistic quantum mechanics. A possible application of this formalism to curvature-induced quantum interferences is also discussed
Prepulse effect on intense femtosecond laser pulse propagation in gas
International Nuclear Information System (INIS)
Giulietti, Antonio; Tomassini, Paolo; Galimberti, Marco; Giulietti, Danilo; Gizzi, Leonida A.; Koester, Petra; Labate, Luca; Ceccotti, Tiberio; D'Oliveira, Pascal; Auguste, Thierry; Monot, Pascal; Martin, Philippe
2006-01-01
The propagation of an ultrashort laser pulse can be affected by the light reaching the medium before the pulse. This can cause a serious drawback to possible applications. The propagation in He of an intense 60-fs pulse delivered by a Ti:sapphire laser in the chirped pulse amplification (CPA) mode has been investigated in conditions of interest for laser-plasma acceleration of electrons. The effects of both nanosecond amplified spontaneous emission and picosecond pedestals have been clearly identified. There is evidence that such effects are basically of refractive nature and that they are not detrimental for the propagation of a CPA pulse focused to moderately relativistic intensity. The observations are fully consistent with numerical simulations and can contribute to the search of a stable regime for laser acceleration
Beam propagation through a gaseous reactor: classical transport
International Nuclear Information System (INIS)
Yu, S.S.; Buchanan, H.L.; Lee, E.P.; Chambers, F.W.
1979-01-01
The present calculations are applicable to any beam geometry with cylindrical symmetry, including the converging beam geometry (large entrance port with radius > or approx. = 10 cm), as well as the pencil-shaped beam (small porthole with radius approx. mm). The small porthole is clearly advantageous from the reactor vessel design point of view. While the physics of the latter mode of propagation may be more complex, analyses up to this point have not revealed any detrimental instability effects that will inhibit propagation. In fact, the large perpendicular velocity v/sub perpendicular/ that the pinched mode can accommodate provides a mechanism for the quenching of filamentary instability. Furthermore, this mode of propagation can withstand more ion scattering and is not subject to the upper bound on pressure (p < 10 torr) which is imposed on the converging beam mode
Affinity between information retrieval system and search topic
International Nuclear Information System (INIS)
Ebinuma, Yukio
1979-01-01
Ten search profiles are tested on the INIS system at the Japan Atomic Energy Research Institute. The results are plotted on recall-precision chart ranging from 100% recall to 100% precision. The curves are not purely systems-dependent nor search-dependent, and are determined substantially by the ''affinity'' between the system and the search topic. The curves are named ''Affinity curves of search topics with information retrieval systems'', and hence retrieval affinity factors are derived. They are obtained not only for individual search topics but also for averages in the system. By such a quantitative examination, the difference of affinity among search topics in a given system, that of the same search topic among various systems, and that of systems to the same group of search topics can be compared reasonably. (author)
Antibody Affinity Maturation in Fishes—Our Current Understanding
Directory of Open Access Journals (Sweden)
Brad G. Magor
2015-07-01
Full Text Available It has long been believed that fish lack antibody affinity maturation, in part because they were thought to lack germinal centers. Recent research done on sharks and bony fishes indicates that these early vertebrates are able to affinity mature their antibodies. This article reviews the functionality of the fish homologue of the immunoglobulin (Ig mutator enzyme activation-induced cytidine deaminase (AID. We also consider the protein and molecular evidence for Ig somatic hypermutation and antibody affinity maturation. In the context of recent evidence for a putative proto-germinal center in fishes we propose some possible reasons that observed affinity maturation in fishes often seems lacking and propose future work that might shed further light on this process in fishes.
Congruence of genomic and ethnolinguistic affinities among five ...
Indian Academy of Sciences (India)
their ethnic and linguistic affinities, we analysed DNA samples of individuals drawn from five tribes with diverse, but ... arisen from admixture between the Gonds (maternal) and ..... nuclear `fossil' of the mitochondrial D-loop and the origin of.
ASIFT: An Algorithm for Fully Affine Invariant Comparison
Directory of Open Access Journals (Sweden)
Guoshen Yu
2011-02-01
Full Text Available If a physical object has a smooth or piecewise smooth boundary, its images obtained by cameras in varying positions undergo smooth apparent deformations. These deformations are locally well approximated by affine transforms of the image plane. In consequence the solid object recognition problem has often been led back to the computation of affine invariant image local features. The similarity invariance (invariance to translation, rotation, and zoom is dealt with rigorously by the SIFT method The method illustrated and demonstrated in this work, Affine-SIFT (ASIFT, simulates a set of sample views of the initial images, obtainable by varying the two camera axis orientation parameters, namely the latitude and the longitude angles, which are not treated by the SIFT method. Then it applies the SIFT method itself to all images thus generated. Thus, ASIFT covers effectively all six parameters of the affine transform.
Sugawara construction for affine SL(N,1)
International Nuclear Information System (INIS)
Henningson, M.
1990-01-01
We investigate the sl(N,1) superalgebras, their affine extensions and their representations. This is used to perform a Sugawara construction of the Virasoro algebra. The allowed values of the conformal anomaly and the conformal dimension are computed. (orig.)
Self-affine fractal growth front of Aspergillus oryzae
Matsuura, Shu; Miyazima, Sasuke
1992-12-01
Aspergillus oryzae have been grown in various environmental conditions and analyzed from the viewpoint of self-affinity. The growth behavior can be described by the Eden model in favorable conditions, and by DLA in unfavorable conditions.
Russo, Giacomo; Capuozzo, Antonella; Barbato, Francesco; Irace, Carlo; Santamaria, Rita; Grumetto, Lucia
2018-06-01
Bisphenol A (BPA) is a chemical used in numerous industrial applications. Due to its well ascertained toxicity as endocrine disruptor, industries have started to replace it with other bisphenols whose alleged greater safety is scarcely supported by literature studies. In this study, the toxicity of seven BPA analogues was evaluated using both in silico and in vitro techniques, as compared to BPA toxicity. Furthermore, their affinity indexes for phospholipids (i.e. phospholipophilicity) were determined by immobilized artificial membrane liquid chromatography (IAM-LC) and possible relationships with in vitro toxic activity were also investigated. The results on four different cell cultures yielded similar ranking of toxicity for the bisphenols considered, with IC 50 values confirming their poor acute toxicity. As compared to BPA, bisphenol AF, bisphenol B, bisphenol M, and bisphenol A diglycidyl ether resulted more toxic, while bisphenol S, bisphenol F and bisphenol E were found as the less toxic congeners. These results are partly consistent with the scale of phospholipid affinity showing that toxicity increases at increasing membrane affinity. Therefore, phospholipophilicity determination can be assumed as a useful preliminary tool to select less toxic congeners to surrogate BPA in industrial applications. Copyright © 2018 Elsevier Ltd. All rights reserved.
Local uncontrollability for affine control systems with jumps
Treanţă, Savin
2017-09-01
This paper investigates affine control systems with jumps for which the ideal If(g1, …, gm) generated by the drift vector field f in the Lie algebra L(f, g1, …, gm) can be imbedded as a kernel of a linear first-order partial differential equation. It will lead us to uncontrollable affine control systems with jumps for which the corresponding reachable sets are included in explicitly described differentiable manifolds.
On $L_p$ Affine Surface Area and Curvature Measures
Zhao, Yiming
2015-01-01
The relationship between $L_p$ affine surface area and curvature measures is investigated. As a result, a new representation of the existing notion of $L_p$ affine surface area depending only on curvature measures is derived. Direct proofs of the equivalence between this new representation and those previously known are provided. The proofs show that the new representation is, in a sense, "polar" to that of Lutwak's and "dual" to that of Sch\\"utt & Werner's.
Color and Contrast Enhancement by Controlled Piecewise Affine Histogram Equalization
Directory of Open Access Journals (Sweden)
Jose-Luis Lisani
2012-10-01
Full Text Available This paper presents a simple contrast enhancement algorithm based on histogram equalization (HE. The proposed algorithm performs a piecewise affine transform of the intensity levels of a digital image such that the new cumulative distribution function will be approximately uniform (as with HE, but where the stretching of the range is locally controlled to avoid brutal noise enhancement. We call this algorithm Piecewise Affine Equalization (PAE. Several experiments show that, in general, the new algorithm improves HE results.
Electromagnetic wave propagation in relativistic magnetized plasmas
International Nuclear Information System (INIS)
Weiss, I.
1985-01-01
An improved mathematical technique and a new code for deriving the conductivity tensor for collisionless plasmas have been developed. The method is applicable to a very general case, including both hot (relativistic) and cold magnetized plasmas, with only isotropic equilibrium distributions being considered here. The usual derivation starts from the relativistic Vlasov equation and leads to an integration over an infinite sum of Bessel functions which has to be done numerically. In the new solution the integration is carried out over a product of two Bessel functions only. This reduces the computing time very significantly. An added advantage over existing codes is our capability to perform the computations for waves propagating obliquely to the magnetic field. Both improvements greatly facilitate investigations of properties of the plasma under conditions hitherto unexplored
Propagating wave correlations in complex systems
International Nuclear Information System (INIS)
Creagh, Stephen C; Gradoni, Gabriele; Hartmann, Timo; Tanner, Gregor
2017-01-01
We describe a novel approach for computing wave correlation functions inside finite spatial domains driven by complex and statistical sources. By exploiting semiclassical approximations, we provide explicit algorithms to calculate the local mean of these correlation functions in terms of the underlying classical dynamics. By defining appropriate ensemble averages, we show that fluctuations about the mean can be characterised in terms of classical correlations. We give in particular an explicit expression relating fluctuations of diagonal contributions to those of the full wave correlation function. The methods have a wide range of applications both in quantum mechanics and for classical wave problems such as in vibro-acoustics and electromagnetism. We apply the methods here to simple quantum systems, so-called quantum maps, which model the behaviour of generic problems on Poincaré sections. Although low-dimensional, these models exhibit a chaotic classical limit and share common characteristics with wave propagation in complex structures. (paper)
Large amplitude parallel propagating electromagnetic oscillitons
International Nuclear Information System (INIS)
Cattaert, Tom; Verheest, Frank
2005-01-01
Earlier systematic nonlinear treatments of parallel propagating electromagnetic waves have been given within a fluid dynamic approach, in a frame where the nonlinear structures are stationary and various constraining first integrals can be obtained. This has lead to the concept of oscillitons that has found application in various space plasmas. The present paper differs in three main aspects from the previous studies: first, the invariants are derived in the plasma frame, as customary in the Sagdeev method, thus retaining in Maxwell's equations all possible effects. Second, a single differential equation is obtained for the parallel fluid velocity, in a form reminiscent of the Sagdeev integrals, hence allowing a fully nonlinear discussion of the oscilliton properties, at such amplitudes as the underlying Mach number restrictions allow. Third, the transition to weakly nonlinear whistler oscillitons is done in an analytical rather than a numerical fashion
Controlling wave propagation through nonlinear engineered granular systems
Leonard, Andrea
We study the fundamental dynamic behavior of a special class of ordered granular systems in order to design new, structured materials with unique physical properties. The dynamic properties of granular systems are dictated by the nonlinear, Hertzian, potential in compression and zero tensile strength resulting from the discrete material structure. Engineering the underlying particle arrangement of granular systems allows for unique dynamic properties, not observed in natural, disordered granular media. While extensive studies on 1D granular crystals have suggested their usefulness for a variety of engineering applications, considerably less attention has been given to higher-dimensional systems. The extension of these studies in higher dimensions could enable the discovery of richer physical phenomena not possible in 1D, such as spatial redirection and anisotropic energy trapping. We present experiments, numerical simulation (based on a discrete particle model), and in some cases theoretical predictions for several engineered granular systems, studying the effects of particle arrangement on the highly nonlinear transient wave propagation to develop means for controlling the wave propagation pathways. The first component of this thesis studies the stress wave propagation resulting from a localized impulsive loading for three different 2D particle lattice structures: square, centered square, and hexagonal granular crystals. By varying the lattice structure, we observe a wide range of properties for the propagating stress waves: quasi-1D solitary wave propagation, fully 2D wave propagation with tunable wave front shapes, and 2D pulsed wave propagation. Additionally the effects of weak disorder, inevitably present in real granular systems, are investigated. The second half of this thesis studies the solitary wave propagation through 2D and 3D ordered networks of granular chains, reducing the effective density compared to granular crystals by selectively placing wave
Robotic high-throughput purification of affinity-tagged recombinant proteins.
Wiesler, Simone C; Weinzierl, Robert O J
2015-01-01
Affinity purification of recombinant proteins has become the method of choice to obtain good quantities and qualities of proteins for a variety of downstream biochemical applications. While manual or FPLC-assisted purification techniques are generally time-consuming and labor-intensive, the advent of high-throughput technologies and liquid handling robotics has simplified and accelerated this process significantly. Additionally, without the human factor as a potential source of error, automated purification protocols allow for the generation of large numbers of proteins simultaneously and under directly comparable conditions. The delivered material is ideal for activity comparisons of different variants of the same protein. Here, we present our strategy for the simultaneous purification of up to 24 affinity-tagged proteins for activity measurements in biochemical assays. The protocol described is suitable for the scale typically required in individual research laboratories.
Interest Rates with Long Memory: A Generalized Affine Term-Structure Model
DEFF Research Database (Denmark)
Osterrieder, Daniela
.S. government bonds, we model the time series of the state vector by means of a co-fractional vector autoregressive model. The implication is that yields of all maturities exhibit nonstationary, yet mean-reverting, long-memory behavior of the order d ≈ 0.87. The long-run dynamics of the state vector are driven......We propose a model for the term structure of interest rates that is a generalization of the discrete-time, Gaussian, affine yield-curve model. Compared to standard affine models, our model allows for general linear dynamics in the vector of state variables. In an application to real yields of U...... forecasts that outperform several benchmark models, especially at long forecasting horizons....
Semiclassical propagator of the Wigner function.
Dittrich, Thomas; Viviescas, Carlos; Sandoval, Luis
2006-02-24
Propagation of the Wigner function is studied on two levels of semiclassical propagation: one based on the Van Vleck propagator, the other on phase-space path integration. Leading quantum corrections to the classical Liouville propagator take the form of a time-dependent quantum spot. Its oscillatory structure depends on whether the underlying classical flow is elliptic or hyperbolic. It can be interpreted as the result of interference of a pair of classical trajectories, indicating how quantum coherences are to be propagated semiclassically in phase space. The phase-space path-integral approach allows for a finer resolution of the quantum spot in terms of Airy functions.
The propagator of quantum gravity in minisuperspace
International Nuclear Information System (INIS)
Louko, J.
1985-04-01
We study the quantum gravitational propagation amplitude between two spacelike three-surfaces in minisuperspaces where the supermomentum constraints are identically satisfied. We derive a well-defined path integral formula for the propagator and show that the propagator is an inverse of the canonical Hamiltonian operator. In an exactly solvable deSitter minisuperspace model the propagator is found to obey semi-classically correct boundary conditions. We discuss the implications for the full theory and suggest an approach to unravelling the physical meaning of the propagator. (orig.)
Tropospheric radiowave propagation beyond the horizon
Du Castel, François
1966-01-01
Tropospheric Radiowave Propagation Beyond the Horizon deals with developments concerning the tropospheric propagation of ultra-short radio waves beyond the horizon, with emphasis on the relationship between the theoretical and the experimental. Topics covered include the general conditions of propagation in the troposphere; general characteristics of propagation beyond the horizon; and attenuation in propagation. This volume is comprised of six chapters and begins with a brief historical look at the various stages that have brought the technique of transhorizon links to its state of developmen
Light propagation in linear optical media
Gillen, Glen D; Guha, Shekhar
2013-01-01
Light Propagation in Linear Optical Media describes light propagation in linear media by expanding on diffraction theories beyond what is available in classic optics books. In one volume, this book combines the treatment of light propagation through various media, interfaces, and apertures using scalar and vector diffraction theories. After covering the fundamentals of light and physical optics, the authors discuss light traveling within an anisotropic crystal and present mathematical models for light propagation across planar boundaries between different media. They describe the propagation o
J. Rogan; T.M. Wright; J. Cardille; H. Pearsall; Y. Ogneva-Himmelberger; Rachel Riemann; Kurt Riitters; K. Partington
2016-01-01
Forest fragmentation has been studied extensively with respect to biodiversity loss, disruption of ecosystem services, and edge effects although the relationship between forest fragmentation and human activities is still not well understood. We classified the pattern of forests in Massachusetts using fragmentation indicators to address...
International Nuclear Information System (INIS)
Hu Naihong; Rosso, M.; Zhang Honglian
2006-12-01
We further find the defining structure of a two-parameter quantum affine algebra U r,s (sl n -circumflex) (n > 2) in the sense of Benkart-Witherspoon [BW1] after the work of [BGH1], [HS] and [BH], which turns out to be a Drinfeld double. Of more importance for the 'affine' cases is that we work out the compatible two-parameter version of the Drinfeld realization as a quantum affinization of U r,s (sl n ) and establish the Drinfeld isomorphism Theorem in the two-parameter setting via developing a new remarkable combinatorial approach - quantum 'affine' Lyndon basis with an explicit valid algorithm, based on the Drinfeld realization. (author)
Propagation phenomena in real world networks
Fay, Damien; Gabryś, Bogdan
2015-01-01
“Propagation, which looks at spreading in complex networks, can be seen from many viewpoints; it is undesirable, or desirable, controllable, the mechanisms generating that propagation can be the topic of interest, but in the end all depends on the setting. This book covers leading research on a wide spectrum of propagation phenomenon and the techniques currently used in its modelling, prediction, analysis and control. Fourteen papers range over topics including epidemic models, models for trust inference, coverage strategies for networks, vehicle flow propagation, bio-inspired routing algorithms, P2P botnet attacks and defences, fault propagation in gene-cellular networks, malware propagation for mobile networks, information propagation in crisis situations, financial contagion in interbank networks, and finally how to maximize the spread of influence in social networks. The compendium will be of interest to researchers, those working in social networking, communications and finance and is aimed at providin...
Multispecimen fatigue crack propagation testing
International Nuclear Information System (INIS)
Ermi, A.M.; Bauer, R.E.; Chin, B.A.; Straalsund, J.L.
1981-01-01
Chains of miniature center-cracked-tension specimens were tested on a conventional testing machine and on a prototypic in-reactor fatigue machine as part of the fusion reactor materials alloy development program. Annealed and 20 percent cold-worked 316 stainless steel specimens were cycled under various conditions of temperature, frequency, stress ratio and chain length. Crack growth rates determined from multispecimen visual measurements and from an electrical potential technique were consistent with those obtained by conventional test methods. Results demonstrate that multispecimen chain testing is a valid method of obtaining fatigue crack propagation information for alloy development. 8 refs
Radio Propagation into Modern Buildings
DEFF Research Database (Denmark)
Rodriguez Larrad, Ignacio; Nguyen, Huan Cong; Jørgensen, Niels T.K.
2014-01-01
Energy-efficient buildings are gaining momentum in order to comply with the new energy regulations. Especially in northern cold countries, thick reinforced walls and energy-efficient windows composed of several layers of glass plus metal coating are becoming the de facto elements in modern building...... constructions. These materials are used in favor of achieving a proper level of thermal isolation, but it has been noticed that they can impact heavily on radio signal propagation. This paper presents a measurement-based analysis of the outdoor-to-indoor attenuation experienced in several modern constructions...
Fast imaging of streamer propagation
International Nuclear Information System (INIS)
Veldhuizen, E.M. van; Baede, A.H.F.M.; Hayashi, D.; Rutgers, W.R.
2001-01-01
Recently measurement methods are becoming available to study the corona discharge in more detail. One of the most promising methods is laser-induced fluorescence to determine radical density. Recent improvements in CCD cameras makes it now possible to improve measurements of the discharge structure to a resolution of 1 ns in time and 10 μm in space. This paper shows the first results of the spontaneous emission of a point-to-plane corona discharge in air using such a camera. It clearly indicates that the 2-D approach for streamer propagation under these conditions is insufficient
Fast imaging of streamer propagation
Energy Technology Data Exchange (ETDEWEB)
Veldhuizen, E.M. van; Baede, A.H.F.M.; Hayashi, D.; Rutgers, W.R. [Eindhoven Univ. of Technology (Netherlands). Dept. of Applied Physics
2001-07-01
Recently measurement methods are becoming available to study the corona discharge in more detail. One of the most promising methods is laser-induced fluorescence to determine radical density. Recent improvements in CCD cameras makes it now possible to improve measurements of the discharge structure to a resolution of 1 ns in time and 10 {mu}m in space. This paper shows the first results of the spontaneous emission of a point-to-plane corona discharge in air using such a camera. It clearly indicates that the 2-D approach for streamer propagation under these conditions is insufficient.
Modification Propagation in Complex Networks
Mouronte, Mary Luz; Vargas, María Luisa; Moyano, Luis Gregorio; Algarra, Francisco Javier García; Del Pozo, Luis Salvador
To keep up with rapidly changing conditions, business systems and their associated networks are growing increasingly intricate as never before. By doing this, network management and operation costs not only rise, but are difficult even to measure. This fact must be regarded as a major constraint to system optimization initiatives, as well as a setback to derived economic benefits. In this work we introduce a simple model in order to estimate the relative cost associated to modification propagation in complex architectures. Our model can be used to anticipate costs caused by network evolution, as well as for planning and evaluating future architecture development while providing benefit optimization.
Probabilistic aspects of fatigue crack propagation data for zirconium-2.5 % niobium
International Nuclear Information System (INIS)
Wilkins, B.J.S.; Reich, A.R.
1976-11-01
Fatigue crack propagation data for Zr-2.5 % Nb pressure tube material at 20 and 400 deg C are presented. The practical application of these data in terms of error analysis and extrapolation errors is discussed. (author)
Studies of nonlinear femtosecond pulse propagation in bulk materials
Eaton, Hilary Kaye
2000-10-01
Femtosecond pulse lasers are finding widespread application in a variety of fields including medical research, optical switching and communications, plasma formation, high harmonic generation, and wavepacket formation and control. As the number of applications for femtosecond pulses increases, so does the need to fully understand the linear and nonlinear processes involved in propagating these pulses through materials under various conditions. Recent advances in pulse measurement techniques, such as frequency-resolved optical gating (FROG), allow measurement of the full electric field of the pulse and have made detailed investigations of short- pulse propagation effects feasible. In this thesis, I present detailed experimental studies of my work involving nonlinear propagation of femtosecond pulses in bulk media. Studies of plane-wave propagation in fused silica extend the SHG form of FROG from a simple pulse diagnostic to a useful method of interrogating the nonlinear response of a material. Studies of nonlinear propagation are also performed in a regime where temporal pulse splitting occurs. Experimental results are compared with a three- dimensional nonlinear Schrödinger equation. This comparison fuels the development of a more complete model for pulse splitting. Experiments are also performed at peak input powers above those at which pulse splitting is observed. At these higher intensities, a broadband continuum is generated. This work presents a detailed study of continuum behavior and power loss as well as the first near-field spatial- spectral measurements of the generated continuum light. Nonlinear plane-wave propagation of short pulses in liquids is also investigated, and a non-instantaneous nonlinearity with a surprisingly short response time of 10 fs is observed in methanol. Experiments in water confirm that this effect in methanol is indeed real. Possible explanations for the observed effect are discussed and several are experimentally rejected. This
Genetic conservation and paddlefish propagation
Sloss, Brian L.; Klumb, Robert A.; Heist, Edward J.
2009-01-01
The conservation of genetic diversity of our natural resources is overwhelmingly one of the central foci of 21st century management practices. Three recommendations related to the conservation of paddlefish Polyodon spathula genetic diversity are to (1) identify genetic diversity at both nuclear and mitochondrial DNA loci using a suggested list of 20 sampling locations, (2) use genetic diversity estimates to develop genetic management units, and (3) identify broodstock sources to minimize effects of supplemental stocking on the genetic integrity of native paddlefish populations. We review previous genetic work on paddlefish and described key principles and concepts associated with maintaining genetic diversity within and among paddlefish populations and also present a genetic case study of current paddlefish propagation at the U.S. Fish and Wildlife Service Gavins Point National Fish Hatchery. This study confirmed that three potential sources of broodfish were genetically indistinguishable at the loci examined, allowing the management agencies cooperating on this program flexibility in sampling gametes. This study also showed significant bias in the hatchery occurred in terms of male reproductive contribution, which resulted in a shift in the genetic diversity of progeny compared to the broodfish. This shift was shown to result from differential male contributions, partially attributed to the mode of egg fertilization. Genetic insights enable implementation of a paddlefish propagation program within an adaptive management strategy that conserves inherent genetic diversity while achieving demographic goals.
Quantum propagation across cosmological singularities
Gielen, Steffen; Turok, Neil
2017-05-01
The initial singularity is the most troubling feature of the standard cosmology, which quantum effects are hoped to resolve. In this paper, we study quantum cosmology with conformal (Weyl) invariant matter. We show that it is natural to extend the scale factor to negative values, allowing a large, collapsing universe to evolve across a quantum "bounce" into an expanding universe like ours. We compute the Feynman propagator for Friedmann-Robertson-Walker backgrounds exactly, identifying curious pathologies in the case of curved (open or closed) universes. We then include anisotropies, fixing the operator ordering of the quantum Hamiltonian by imposing covariance under field redefinitions and again finding exact solutions. We show how complex classical solutions allow one to circumvent the singularity while maintaining the validity of the semiclassical approximation. The simplest isotropic universes sit on a critical boundary, beyond which there is qualitatively different behavior, with potential for instability. Additional scalars improve the theory's stability. Finally, we study the semiclassical propagation of inhomogeneous perturbations about the flat, isotropic case, at linear and nonlinear order, showing that, at least at this level, there is no particle production across the bounce. These results form the basis for a promising new approach to quantum cosmology and the resolution of the big bang singularity.
Simplified propagation of standard uncertainties
International Nuclear Information System (INIS)
Shull, A.H.
1997-01-01
An essential part of any measurement control program is adequate knowledge of the uncertainties of the measurement system standards. Only with an estimate of the standards'' uncertainties can one determine if the standard is adequate for its intended use or can one calculate the total uncertainty of the measurement process. Purchased standards usually have estimates of uncertainty on their certificates. However, when standards are prepared and characterized by a laboratory, variance propagation is required to estimate the uncertainty of the standard. Traditional variance propagation typically involves tedious use of partial derivatives, unfriendly software and the availability of statistical expertise. As a result, the uncertainty of prepared standards is often not determined or determined incorrectly. For situations meeting stated assumptions, easier shortcut methods of estimation are now available which eliminate the need for partial derivatives and require only a spreadsheet or calculator. A system of simplifying the calculations by dividing into subgroups of absolute and relative uncertainties is utilized. These methods also incorporate the International Standards Organization (ISO) concepts for combining systematic and random uncertainties as published in their Guide to the Expression of Measurement Uncertainty. Details of the simplified methods and examples of their use are included in the paper
Uncertainty propagation in nuclear forensics
International Nuclear Information System (INIS)
Pommé, S.; Jerome, S.M.; Venchiarutti, C.
2014-01-01
Uncertainty propagation formulae are presented for age dating in support of nuclear forensics. The age of radioactive material in this context refers to the time elapsed since a particular radionuclide was chemically separated from its decay product(s). The decay of the parent radionuclide and ingrowth of the daughter nuclide are governed by statistical decay laws. Mathematical equations allow calculation of the age of specific nuclear material through the atom ratio between parent and daughter nuclides, or through the activity ratio provided that the daughter nuclide is also unstable. The derivation of the uncertainty formulae of the age may present some difficulty to the user community and so the exact solutions, some approximations, a graphical representation and their interpretation are presented in this work. Typical nuclides of interest are actinides in the context of non-proliferation commitments. The uncertainty analysis is applied to a set of important parent–daughter pairs and the need for more precise half-life data is examined. - Highlights: • Uncertainty propagation formulae for age dating with nuclear chronometers. • Applied to parent–daughter pairs used in nuclear forensics. • Investigated need for better half-life data
Traceless affinity labeling of endogenous proteins for functional analysis in living cells.
Hayashi, Takahiro; Hamachi, Itaru
2012-09-18
affinity labeling method and allows for real-time monitoring of protein activity. With the high target specificity and biocompatibility of this technique, we have achieved individual labeling and imaging of endogenously expressed proteins in samples of high biological complexity. We also highlight applications in which our current approach enabled the monitoring of important biological events, such as ligand binding, in living cells. These novel chemical labeling techniques are expected to provide a molecular toolbox for studying a wide variety of proteins and beyond in living cells.
Energy Technology Data Exchange (ETDEWEB)
Baudrit, C
2005-10-15
Currently, decisions pertaining to the management of potentially polluted sites very often rely on the evaluation of risks for man and the environment. This evaluation is carried out with the help of models which simulate the transfer of pollutants from a source to a vulnerable target, for different scenarios of exposure. The selection of parameter values of these models is based as much as possible on the data collected at the time of on-site investigations (phase of diagnosis). However, due to time and financial constraints, information regarding model parameters is often incomplete and imprecise. This leads to uncertainty that needs to be accounted for the decision-making process. Uncertainty regarding model parameters may have essentially two origins. It may arise from randomness due to natural variability resulting from heterogeneity of population or the fluctuations of a quantity in time. Or it may be caused by impreciseness due to a lack of information resulting, for example, from systematic measurement errors or expert opinions. In risk assessment, no distinction is traditionally made between these two types of uncertainty, both being represented by means of a single probability distribution. So, uncertainty in risk assessment models is generally addressed within a purely probabilistic framework. This approach comes down to assuming that knowledge regarding model parameters is always of random nature (variability). Such knowledge is represented by single probability distributions typically propagated through the risk model using the Monte-Carlo technique. Even if this approach is well-known, the difficulty is to avoid an arbitrary choice of the shape of probability distributions assigned to model parameters. Indeed in the context of risk assessment related to pollutant exposure, knowledge of some parameters is often imprecise or incomplete. The use of single probability distribution to represent this type of knowledge becomes subjective and partly arbitrary
Directory of Open Access Journals (Sweden)
Yibo Sun
2017-03-01
Full Text Available Ultrasonic bonding has an increasing application in the micro assembly of polymeric micro-electro mechanical systems (MEMS with high requirements for fusion precision. In the ultrasonic bonding process, the propagation of ultrasonic vibration in polymer components is related to the interfacial fusion, which can be used as a monitoring parameter to control ultrasonic energy. To study the vibration propagation in viscoelastic polymer components, finite element analysis on the bonding of poly methyl methacrylate (PMMA micro connector to substrate for microfluidic system is carried out. Curves of propagated vibration amplitude corresponding to interfacial temperatures are obtained. The ultrasonic vibration propagated in PMMA components are measured through experiments. The theoretical and experimental results are contrasted to analyze the change mechanism of vibration propagation related to temperature. Based on the ultrasonic bonding process controlled by the feedback of vibration propagation, interfacial fusions at different vibration propagation states are obtained through experiments. Interfacial fusion behavior is contrasted to the propagated vibration amplitude in theoretical and experimental studies. The relation between vibration propagation and fusion degree is established with the proper parameter range for the obtained high quality bonding.