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Sample records for affinity propagation applications

  1. Hierarchical Affinity Propagation

    CERN Document Server

    Givoni, Inmar; Frey, Brendan J

    2012-01-01

    Affinity propagation is an exemplar-based clustering algorithm that finds a set of data-points that best exemplify the data, and associates each datapoint with one exemplar. We extend affinity propagation in a principled way to solve the hierarchical clustering problem, which arises in a variety of domains including biology, sensor networks and decision making in operational research. We derive an inference algorithm that operates by propagating information up and down the hierarchy, and is efficient despite the high-order potentials required for the graphical model formulation. We demonstrate that our method outperforms greedy techniques that cluster one layer at a time. We show that on an artificial dataset designed to mimic the HIV-strain mutation dynamics, our method outperforms related methods. For real HIV sequences, where the ground truth is not available, we show our method achieves better results, in terms of the underlying objective function, and show the results correspond meaningfully to geographi...

  2. Scaling analysis of affinity propagation.

    Science.gov (United States)

    Furtlehner, Cyril; Sebag, Michèle; Zhang, Xiangliang

    2010-06-01

    We analyze and exploit some scaling properties of the affinity propagation (AP) clustering algorithm proposed by Frey and Dueck [Science 315, 972 (2007)]. Following a divide and conquer strategy we setup an exact renormalization-based approach to address the question of clustering consistency, in particular, how many cluster are present in a given data set. We first observe that the divide and conquer strategy, used on a large data set hierarchically reduces the complexity O(N2) to O(N((h+2)/(h+1))) , for a data set of size N and a depth h of the hierarchical strategy. For a data set embedded in a d -dimensional space, we show that this is obtained without notably damaging the precision except in dimension d=2 . In fact, for d larger than 2 the relative loss in precision scales such as N((2-d)/(h+1)d). Finally, under some conditions we observe that there is a value s* of the penalty coefficient, a free parameter used to fix the number of clusters, which separates a fragmentation phase (for ss*) of the underlying hidden cluster structure. At this precise point holds a self-similarity property which can be exploited by the hierarchical strategy to actually locate its position, as a result of an exact decimation procedure. From this observation, a strategy based on AP can be defined to find out how many clusters are present in a given data set. PMID:20866473

  3. Data Stream Clustering With Affinity Propagation

    KAUST Repository

    Zhang, Xiangliang

    2014-07-09

    Data stream clustering provides insights into the underlying patterns of data flows. This paper focuses on selecting the best representatives from clusters of streaming data. There are two main challenges: how to cluster with the best representatives and how to handle the evolving patterns that are important characteristics of streaming data with dynamic distributions. We employ the Affinity Propagation (AP) algorithm presented in 2007 by Frey and Dueck for the first challenge, as it offers good guarantees of clustering optimality for selecting exemplars. The second challenging problem is solved by change detection. The presented StrAP algorithm combines AP with a statistical change point detection test; the clustering model is rebuilt whenever the test detects a change in the underlying data distribution. Besides the validation on two benchmark data sets, the presented algorithm is validated on a real-world application, monitoring the data flow of jobs submitted to the EGEE grid.

  4. Classification of neocortical interneurons using affinity propagation

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    Roberto eSantana

    2013-12-01

    Full Text Available In spite of over a century of research on cortical circuits, it is still unknown how many classes of cortical neurons exist. Neuronal classification has been a difficult problem because it is unclear what a neuronal cell class actually is and what are the best characteristics are to define them. Recently, unsupervised classifications using cluster analysis based on morphological, physiological or molecular characteristics, when applied to selected datasets, have provided quantitative and unbiased identification of distinct neuronal subtypes. However, better and more robust classification methods are needed for increasingly complex and larger datasets. We explored the use of affinity propagation, a recently developed unsupervised classification algorithm imported from machine learning, which gives a representative example or exemplar for each cluster. As a case study, we applied affinity propagation to a test dataset of 337 interneurons belonging to four subtypes, previously identified based on morphological and physiological characteristics. We found that affinity propagation correctly classified most of the neurons in a blind, non-supervised manner. In fact, using a combined anatomical/physiological dataset, our algorithm differentiated parvalbumin from somatostatin interneurons in 49 out of 50 cases. Affinity propagation could therefore be used in future studies to validly classify neurons, as a first step to help reverse engineer neural circuits.

  5. Semisupervised Clustering for Networks Based on Fast Affinity Propagation

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    Mu Zhu

    2013-01-01

    Full Text Available Most of the existing clustering algorithms for networks are unsupervised, which cannot help improve the clustering quality by utilizing a small number of prior knowledge. We propose a semisupervised clustering algorithm for networks based on fast affinity propagation (SCAN-FAP, which is essentially a kind of similarity metric learning method. Firstly, we define a new constraint similarity measure integrating the structural information and the pairwise constraints, which reflects the effective similarities between nodes in networks. Then, taking the constraint similarities as input, we propose a fast affinity propagation algorithm which keeps the advantages of the original affinity propagation algorithm while increasing the time efficiency by passing only the messages between certain nodes. Finally, by extensive experimental studies, we demonstrate that the proposed algorithm can take fully advantage of the prior knowledge and improve the clustering quality significantly. Furthermore, our algorithm has a superior performance to some of the state-of-art approaches.

  6. Distributed Clustering in Cognitive Radio Ad Hoc Networks Using Soft-Constraint Affinity Propagation

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    J.Z. Zhang

    2012-09-01

    Full Text Available Absence of network infrastructure and heterogeneous spectrum availability in cognitive radio ad hoc networks (CRAHNs necessitate the self-organization of cognitive radio users (CRs for efficient spectrum coordination. The cluster-based structure is known to be effective in both guaranteeing system performance and reducing communication overhead in variable network environment. In this paper, we propose a distributed clustering algorithm based on soft-constraint affinity propagation message passing model (DCSCAP. Without dependence on predefined common control channel (CCC, DCSCAP relies on the distributed message passing among CRs through their available channels, making the algorithm applicable for large scale networks. Different from original soft-constraint affinity propagation algorithm, the maximal iterations of message passing is controlled to a relatively small number to accommodate to the dynamic environment of CRAHNs. Based on the accumulated evidence for clustering from the message passing process, clusters are formed with the objective of grouping the CRs with similar spectrum availability into smaller number of clusters while guaranteeing at least one CCC in each cluster. Extensive simulation results demonstrate the preference of DCSCAP compared with existing algorithms in both efficiency and robustness of the clusters.

  7. Local and global approaches of affinity propagation clustering for large scale data

    CERN Document Server

    Xia, Dingyin; Zhang, Xuqing; Zhuang, Yueting

    2009-01-01

    Recently a new clustering algorithm called 'affinity propagation' (AP) has been proposed, which efficiently clustered sparsely related data by passing messages between data points. However, we want to cluster large scale data where the similarities are not sparse in many cases. This paper presents two variants of AP for grouping large scale data with a dense similarity matrix. The local approach is partition affinity propagation (PAP) and the global method is landmark affinity propagation (LAP). PAP passes messages in the subsets of data first and then merges them as the number of initial step of iterations; it can effectively reduce the number of iterations of clustering. LAP passes messages between the landmark data points first and then clusters non-landmark data points; it is a large global approximation method to speed up clustering. Experiments are conducted on many datasets, such as random data points, manifold subspaces, images of faces and Chinese calligraphy, and the results demonstrate that the two...

  8. Application of PCA and Eros Affinity Propagation Clustering in Financial Data Sets%基于主成分分析和 Eros 的邻近传播算法在金融数据集中的应用

    Institute of Scientific and Technical Information of China (English)

    廖洪一; 王欣

    2015-01-01

    The multi-dimensional characteristics and high noise characteristics of the financial data set make it hard to analyze the time series.This paper puts forward an algorithm based on the principal component analysis and the Eros affinity propagation clustering.First it uses the principal component analysis method to extract the main eigenvalues of the multivariate financial time series data;then uses the Eros affinity propagation clustering to analyze the extracted eigenvalues.This kind of clustering algo-rithm can make the individual data as an attribute of the original data, through iterate competition to achieve optimal, do not need to find the number of clusters.The research results show that, this integrated method greatly reduces the dimension of the time se-ries, and has a highly correct classification rate.It proves that this algorithm is very effective.%金融数据集的多维特性和高噪声特性使得对金融时间序列数据的分析难上加难,本文提出一种基于主成分分析和Eros的近邻传播的聚类算法。首先利用主成分分析方法对多变量的金融时间序列数据进行降维处理,提取出主要特征值;然后使用基于Eros的近邻传播算法聚类对提取出的特征值进行分析。该聚类方法可以把数据集中的个体当作是原始数据的一个属性,通过迭代竞争达到最优,不需要事先确定聚类数目。研究结果表明,这种集成算法大大降低了时间序列数据的维度,有很高的分类正确率,表明该聚类方法用于金融时间序列数据处理是有效可行的。

  9. Self-training-based face recognition using semi-supervised linear discriminant analysis and affinity propagation.

    Science.gov (United States)

    Gan, Haitao; Sang, Nong; Huang, Rui

    2014-01-01

    Face recognition is one of the most important applications of machine learning and computer vision. The traditional supervised learning methods require a large amount of labeled face images to achieve good performance. In practice, however, labeled images are usually scarce while unlabeled ones may be abundant. In this paper, we introduce a semi-supervised face recognition method, in which semi-supervised linear discriminant analysis (SDA) and affinity propagation (AP) are integrated into a self-training framework. In particular, SDA is employed to compute the face subspace using both labeled and unlabeled images, and AP is used to identify the exemplars of different face classes in the subspace. The unlabeled data can then be classified according to the exemplars and the newly labeled data with the highest confidence are added to the labeled data, and the whole procedure iterates until convergence. A series of experiments on four face datasets are carried out to evaluate the performance of our algorithm. Experimental results illustrate that our algorithm outperforms the other unsupervised, semi-supervised, and supervised methods. PMID:24561932

  10. Propagation of signals in spaces with affine connections and metrics as models of space-time

    OpenAIRE

    Manoff, Sawa

    2003-01-01

    The propagation of signals in space-time is considered on the basis of the notion of null (isotropic) vector field in spaces with affine connections and metrics as models of space or of space-time. The Doppler effect is generalized for these types of spaces. The notions of aberration, standard (longitudinal) Doppler effect, and transversal Doppler effect are considered. On their grounds, the Hubble effect appears as Doppler effect with explicit forms of the centrifugal (centripetal) and Corio...

  11. Accurate Ionization Potentials and Electron Affinities of Acceptor Molecules IV: Electron-Propagator Methods.

    Science.gov (United States)

    Dolgounitcheva, O; Díaz-Tinoco, Manuel; Zakrzewski, V G; Richard, Ryan M; Marom, Noa; Sherrill, C David; Ortiz, J V

    2016-02-01

    Comparison of ab initio electron-propagator predictions of vertical ionization potentials and electron affinities of organic, acceptor molecules with benchmark calculations based on the basis set-extrapolated, coupled cluster single, double, and perturbative triple substitution method has enabled identification of self-energy approximations with mean, unsigned errors between 0.1 and 0.2 eV. Among the self-energy approximations that neglect off-diagonal elements in the canonical, Hartree-Fock orbital basis, the P3 method for electron affinities, and the P3+ method for ionization potentials provide the best combination of accuracy and computational efficiency. For approximations that consider the full self-energy matrix, the NR2 methods offer the best performance. The P3+ and NR2 methods successfully identify the correct symmetry label of the lowest cationic state in two cases, naphthalenedione and benzoquinone, where some other methods fail. PMID:26730459

  12. Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis

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    Franz Silvio

    2011-06-01

    Full Text Available Abstract Background Classification and naming is a key step in the analysis, understanding and adequate management of living organisms. However, where to set limits between groups can be puzzling especially in clonal organisms. Within the Mycobacterium tuberculosis complex (MTC, the etiological agent of tuberculosis (TB, experts have first identified several groups according to their pattern at repetitive sequences, especially at the CRISPR locus (spoligotyping, and to their epidemiological relevance. Most groups such as "Beijing" found good support when tested with other loci. However, other groups such as T family and T1 subfamily (belonging to the "Euro-American" lineage correspond to non-monophyletic groups and still need to be refined. Here, we propose to use a method called Affinity Propagation that has been successfully used in image categorization to identify relevant patterns at the CRISPR locus in MTC. Results To adequately infer the relative divergence time between strains, we used a distance method inspired by the recent evolutionary model by Reyes et al. We first confirm that this method performs better than the Jaccard index commonly used to compare spoligotype patterns. Second, we document the support of each spoligotype family among the previous classification using affinity propagation on the international spoligotyping database SpolDB4. This allowed us to propose a consensus assignation for all SpolDB4 spoligotypes. Third, we propose new signatures to subclassify the T family. Conclusion Altogether, this study shows how the new clustering algorithm Affinity Propagation can help building or refining clonal organims classifications. It also describes well-supported families and subfamilies among M. tuberculosis complex, especially inside the modern "Euro-American" lineage.

  13. A multiobjective evolutionary algorithm to find community structures based on affinity propagation

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    Shang, Ronghua; Luo, Shuang; Zhang, Weitong; Stolkin, Rustam; Jiao, Licheng

    2016-07-01

    Community detection plays an important role in reflecting and understanding the topological structure of complex networks, and can be used to help mine the potential information in networks. This paper presents a Multiobjective Evolutionary Algorithm based on Affinity Propagation (APMOEA) which improves the accuracy of community detection. Firstly, APMOEA takes the method of affinity propagation (AP) to initially divide the network. To accelerate its convergence, the multiobjective evolutionary algorithm selects nondominated solutions from the preliminary partitioning results as its initial population. Secondly, the multiobjective evolutionary algorithm finds solutions approximating the true Pareto optimal front through constantly selecting nondominated solutions from the population after crossover and mutation in iterations, which overcomes the tendency of data clustering methods to fall into local optima. Finally, APMOEA uses an elitist strategy, called "external archive", to prevent degeneration during the process of searching using the multiobjective evolutionary algorithm. According to this strategy, the preliminary partitioning results obtained by AP will be archived and participate in the final selection of Pareto-optimal solutions. Experiments on benchmark test data, including both computer-generated networks and eight real-world networks, show that the proposed algorithm achieves more accurate results and has faster convergence speed compared with seven other state-of-art algorithms.

  14. An Affinity Propagation Clustering Algorithm for Mixed Numeric and Categorical Datasets

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    Kang Zhang

    2014-01-01

    Full Text Available Clustering has been widely used in different fields of science, technology, social science, and so forth. In real world, numeric as well as categorical features are usually used to describe the data objects. Accordingly, many clustering methods can process datasets that are either numeric or categorical. Recently, algorithms that can handle the mixed data clustering problems have been developed. Affinity propagation (AP algorithm is an exemplar-based clustering method which has demonstrated good performance on a wide variety of datasets. However, it has limitations on processing mixed datasets. In this paper, we propose a novel similarity measure for mixed type datasets and an adaptive AP clustering algorithm is proposed to cluster the mixed datasets. Several real world datasets are studied to evaluate the performance of the proposed algorithm. Comparisons with other clustering algorithms demonstrate that the proposed method works well not only on mixed datasets but also on pure numeric and categorical datasets.

  15. Nonlinear force propagation, anisotropic stiffening and non-affine relaxation in a model cytoskeleton

    Science.gov (United States)

    Mizuno, Daisuke; Head, David; Ikebe, Emi; Nakamasu, Akiko; Kinoshita, Suguru; Peijuan, Zhang; Ando, Shoji

    2013-03-01

    Forces are generated heterogeneously in living cells and transmitted through cytoskeletal networks that respond highly non-linearly. Here, we carry out high-bandwidth passive microrheology on vimentin networks reconstituted in vitro, and observe the nonlinear mechanical response due to forces propagating from a local source applied by an optical tweezer. Since the applied force is constant, the gel becomes equilibrated and the fluctuation-dissipation theorem can be employed to deduce the viscoelasticity of the local environment from the thermal fluctuations of colloidal probes. Our experiments unequivocally demonstrate the anisotropic stiffening of the cytoskeletal network behind the applied force, with greater stiffening in the parallel direction. Quantitative agreement with an affine continuum model is obtained, but only for the response at certain frequency ~ 10-1000 Hz which separates the high-frequency power law and low-frequency elastic behavior of the network. We argue that the failure of the model at lower frequencies is due to the presence of non-affinity, and observe that zero-frequency changes in particle separation can be fitted when an independently-measured, empirical nonaffinity factor is applied.

  16. Detection-Guided Fast Affine Projection Channel Estimator for Speech Applications

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    Yan Wu Jennifer

    2007-04-01

    Full Text Available In various adaptive estimation applications, such as acoustic echo cancellation within teleconferencing systems, the input signal is a highly correlated speech. This, in general, leads to extremely slow convergence of the NLMS adaptive FIR estimator. As a result, for such applications, the affine projection algorithm (APA or the low-complexity version, the fast affine projection (FAP algorithm, is commonly employed instead of the NLMS algorithm. In such applications, the signal propagation channel may have a relatively low-dimensional impulse response structure, that is, the number m of active or significant taps within the (discrete-time modelled channel impulse response is much less than the overall tap length n of the channel impulse response. For such cases, we investigate the inclusion of an active-parameter detection-guided concept within the fast affine projection FIR channel estimator. Simulation results indicate that the proposed detection-guided fast affine projection channel estimator has improved convergence speed and has lead to better steady-state performance than the standard fast affine projection channel estimator, especially in the important case of highly correlated speech input signals.

  17. Detection-Guided Fast Affine Projection Channel Estimator for Speech Applications

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    Homer John

    2007-01-01

    Full Text Available In various adaptive estimation applications, such as acoustic echo cancellation within teleconferencing systems, the input signal is a highly correlated speech. This, in general, leads to extremely slow convergence of the NLMS adaptive FIR estimator. As a result, for such applications, the affine projection algorithm (APA or the low-complexity version, the fast affine projection (FAP algorithm, is commonly employed instead of the NLMS algorithm. In such applications, the signal propagation channel may have a relatively low-dimensional impulse response structure, that is, the number m of active or significant taps within the (discrete-time modelled channel impulse response is much less than the overall tap length n of the channel impulse response. For such cases, we investigate the inclusion of an active-parameter detection-guided concept within the fast affine projection FIR channel estimator. Simulation results indicate that the proposed detection-guided fast affine projection channel estimator has improved convergence speed and has lead to better steady-state performance than the standard fast affine projection channel estimator, especially in the important case of highly correlated speech input signals.

  18. Markov clustering versus affinity propagation for the partitioning of protein interaction graphs

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    Vlasblom James

    2009-03-01

    Full Text Available Abstract Background Genome scale data on protein interactions are generally represented as large networks, or graphs, where hundreds or thousands of proteins are linked to one another. Since proteins tend to function in groups, or complexes, an important goal has been to reliably identify protein complexes from these graphs. This task is commonly executed using clustering procedures, which aim at detecting densely connected regions within the interaction graphs. There exists a wealth of clustering algorithms, some of which have been applied to this problem. One of the most successful clustering procedures in this context has been the Markov Cluster algorithm (MCL, which was recently shown to outperform a number of other procedures, some of which were specifically designed for partitioning protein interactions graphs. A novel promising clustering procedure termed Affinity Propagation (AP was recently shown to be particularly effective, and much faster than other methods for a variety of problems, but has not yet been applied to partition protein interaction graphs. Results In this work we compare the performance of the Affinity Propagation (AP and Markov Clustering (MCL procedures. To this end we derive an unweighted network of protein-protein interactions from a set of 408 protein complexes from S. cervisiae hand curated in-house, and evaluate the performance of the two clustering algorithms in recalling the annotated complexes. In doing so the parameter space of each algorithm is sampled in order to select optimal values for these parameters, and the robustness of the algorithms is assessed by quantifying the level of complex recall as interactions are randomly added or removed to the network to simulate noise. To evaluate the performance on a weighted protein interaction graph, we also apply the two algorithms to the consolidated protein interaction network of S. cerevisiae, derived from genome scale purification experiments and to versions of

  19. A general method of community detection by identifying community centers with affinity propagation

    Science.gov (United States)

    Guo, Wei-Feng; Zhang, Shao-Wu

    2016-04-01

    Detection of community structures is beneficial to analyzing the structures and properties of networks. It is of theoretical interest and practical significance in modern science. So far, a large number of algorithms have been proposed to detect community structures in complex networks, but most of them are suitable for a specific network structure. In this paper, a novel method (called CDMIC) is proposed to detect the communities in un-weighted, weighted, un-directed, directed and signed networks by constructing a dissimilarity distance matrix of network and identifying community centers with maximizing modularity. For a given network, we first estimate the distance between all pairs of nodes for constructing the dissimilarity distance matrix of the network. Then, this distance matrix is input to the affinity propagation (AP) algorithm to extract a candidate center set of community. Thirdly, we rank these centers in descending order according to the sum of their availability and responsibility. Finally, we determine the community structure by selecting the center subset from the candidate center set in an incremental manner to make the modularity maximization. On three real-world networks and some synthetic networks, experimental results show that our CDMIC method has higher performance in terms of classification accuracy and normalized mutual information (NMI), and ability to tolerate the resolution limitation.

  20. Clustering Protein Sequences Using Affinity Propagation Based on an Improved Similarity Measure

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    Fan Yang

    2010-01-01

    Full Text Available The sizes of the protein databases are growing rapidly nowadays, thus it becomes increasingly important to cluster protein sequences only based on sequence information. In this paper we improve the similarity measure proposed by Kelil et al, then cluster sequences using the Affinity propagation (AP algorithm and provide a method to decide the input preference of AP algorithm. We tested our method extensively and compared its performance with other four methods on several datasets of COG, G protein, CAZy, SCOP database. We consistently observed that, the number of clusters that we obtained for a given set of proteins approximate to the correct number of clusters in that set. Moreover, in our experiments, the quality of the clusters when quantified by F-measure was better than that of other algorithms (on average, it is 15% better than that of BlastClust, 56% better than that of TribeMCL, 23% better than that of CLUSS, and 42% better than that of Spectral clustering.

  1. K-AP: Generating specified K clusters by efficient Affinity Propagation

    KAUST Repository

    Zhang, Xiangliang

    2010-12-01

    The Affinity Propagation (AP) clustering algorithm proposed by Frey and Dueck (2007) provides an understandable, nearly optimal summary of a data set. However, it suffers two major shortcomings: i) the number of clusters is vague with the user-defined parameter called self-confidence, and ii) the quadratic computational complexity. When aiming at a given number of clusters due to prior knowledge, AP has to be launched many times until an appropriate setting of self-confidence is found. The re-launched AP increases the computational cost by one order of magnitude. In this paper, we propose an algorithm, called K-AP, to exploit the immediate results of K clusters by introducing a constraint in the process of message passing. Through theoretical analysis and experimental validation, K-AP was shown to be able to directly generate K clusters as user defined, with a negligible increase of computational cost compared to AP. In the meanwhile, K-AP preserves the clustering quality as AP in terms of the distortion. K-AP is more effective than k-medoids w.r.t. the distortion minimization and higher clustering purity. © 2010 IEEE.

  2. Affinity based and molecularly imprinted cryogels: Applications in biomacromolecule purification.

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    Andaç, Müge; Galaev, Igor Yu; Denizli, Adil

    2016-05-15

    The publications in macro-molecularly imprinted polymers have increased drastically in recent years with the development of water-based polymer systems. The macroporous structure of cryogels has allowed the use of these materials within different applications, particularly in affinity purification and molecular imprinting based methods. Due to their high selectivity, specificity, efficient mass transfer and good reproducibility, molecularly imprinted cryogels (MICs) have become attractive for researchers in the separation and purification of proteins. In this review, the recent developments in affinity based cryogels and molecularly imprinted cryogels in protein purification are reviewed comprehensively. PMID:26454622

  3. An Efficient Text Clustering Approach using Affinity Propagation with weight modification

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    Isha Sharma

    2014-05-01

    Full Text Available Recently the text mining has emerged as one of the most important fields of data mining because of most of the searching in the web is done on the basis of provided text, also the increasing use of social web network uses the text as major component and extracting the effective information directly or indirectly requires an efficient grouping algorithm which should be capable of providing efficient clustering. The most widely used techniques use vector space model to find equivalent vector of the text for clustering. The vector space model represents the text on the form of n-tuples numeric array (vector where each dimension represents the unique word and the value is the weight of that word on the basis of term frequency-inverse document frequency (tf-idf, the problem of the technique is that the unique words count in any document may be very large which will create the similarly long vectors whose processing will require large memory with processing power secondly analysis may be required a bias categorical grouping which not addressed in the above technique. Hence in this paper an efficient clustering approach is presented which uses one dimension for the group of the words representing the similar area of interest with that we have also considered the uneven weighting of each dimension depending upon the categorical bias during clustering. After creating the vector the clustering is performed using seedsaffinity clustering technique. Finally to study the performance of the presented algorithm, it is applied to the benchmark data set Reuters-21578 and compared it for F-measure, Entropy and Execution time with k-means algorithm and the original AP (affinity propagation algorithm the results shows that the presented algorithm outperforms the others by acceptable margin.

  4. Fundamentals and application of ordered molecular assemblies to affinity biosensing.

    Science.gov (United States)

    Matharu, Zimple; Bandodkar, Amay Jairaj; Gupta, Vinay; Malhotra, Bansi Dhar

    2012-02-01

    Organization of biomolecules in two/three dimensional assemblies has recently aroused much interest in nanobiotechnology. In this context, the development of techniques for controlling spatial arrangement and orientation of the desired molecules to generate highly-ordered nanostructures in the form of a mono/multi layer is considered highly significant. The studies of monolayer films to date have focused on three distinct methods of preparation: (i) the Langmuir-Blodgett (LB) technique, involving the transfer of a monolayer assembled at the gas-liquid interface; (ii) self-assembly at the liquid-solid interface, based on spontaneous adsorption of desired molecules from a solution directly onto a solid surface; and (iii) Layer-by-layer (LBL) self-assembly at a liquid-solid interface, based on inter-layer electrostatic attractions for fabrication of multilayers. A variety of monolayers have been utilized to fabricate biomolecular electronic devices including biosensors. The composition of a monolayer based matrix has been found to influence the activity(ies) of biomolecule(s). We present comprehensive and critical analysis of ordered molecular assemblies formed by LB and self-assembly with potential applications to affinity biosensing. This critical review on fundamentals and application of ordered molecular assemblies to affinity biosensing is likely to benefit researchers working in this as well as related fields of research (401 references). PMID:22105315

  5. A Mixed Approach to Similarity Metric Selection in Affinity Propagation-Based WiFi Fingerprinting Indoor Positioning.

    Science.gov (United States)

    Caso, Giuseppe; de Nardis, Luca; di Benedetto, Maria-Gabriella

    2015-01-01

    The weighted k-nearest neighbors (WkNN) algorithm is by far the most popular choice in the design of fingerprinting indoor positioning systems based on WiFi received signal strength (RSS). WkNN estimates the position of a target device by selecting k reference points (RPs) based on the similarity of their fingerprints with the measured RSS values. The position of the target device is then obtained as a weighted sum of the positions of the k RPs. Two-step WkNN positioning algorithms were recently proposed, in which RPs are divided into clusters using the affinity propagation clustering algorithm, and one representative for each cluster is selected. Only cluster representatives are then considered during the position estimation, leading to a significant computational complexity reduction compared to traditional, flat WkNN. Flat and two-step WkNN share the issue of properly selecting the similarity metric so as to guarantee good positioning accuracy: in two-step WkNN, in particular, the metric impacts three different steps in the position estimation, that is cluster formation, cluster selection and RP selection and weighting. So far, however, the only similarity metric considered in the literature was the one proposed in the original formulation of the affinity propagation algorithm. This paper fills this gap by comparing different metrics and, based on this comparison, proposes a novel mixed approach in which different metrics are adopted in the different steps of the position estimation procedure. The analysis is supported by an extensive experimental campaign carried out in a multi-floor 3D indoor positioning testbed. The impact of similarity metrics and their combinations on the structure and size of the resulting clusters, 3D positioning accuracy and computational complexity are investigated. Results show that the adoption of metrics different from the one proposed in the original affinity propagation algorithm and, in particular, the combination of different

  6. A Novel User Classification Method for Femtocell Network by Using Affinity Propagation Algorithm and Artificial Neural Network

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    Afaz Uddin Ahmed

    2014-01-01

    Full Text Available An artificial neural network (ANN and affinity propagation (AP algorithm based user categorization technique is presented. The proposed algorithm is designed for closed access femtocell network. ANN is used for user classification process and AP algorithm is used to optimize the ANN training process. AP selects the best possible training samples for faster ANN training cycle. The users are distinguished by using the difference of received signal strength in a multielement femtocell device. A previously developed directive microstrip antenna is used to configure the femtocell device. Simulation results show that, for a particular house pattern, the categorization technique without AP algorithm takes 5 indoor users and 10 outdoor users to attain an error-free operation. While integrating AP algorithm with ANN, the system takes 60% less training samples reducing the training time up to 50%. This procedure makes the femtocell more effective for closed access operation.

  7. Smooth affine shear tight frames: digitization and applications

    Science.gov (United States)

    Zhuang, Xiaosheng

    2015-08-01

    In this paper, we mainly discuss one of the recent developed directional multiscale representation systems: smooth affine shear tight frames. A directional wavelet tight frame is generated by isotropic dilations and translations of directional wavelet generators, while an affine shear tight frame is generated by anisotropic dilations, shears, and translations of shearlet generators. These two tight frames are actually connected in the sense that the affine shear tight frame can be obtained from a directional wavelet tight frame through subsampling. Consequently, an affine shear tight frame indeed has an underlying filter bank from the MRA structure of its associated directional wavelet tight frame. We call such filter banks affine shear filter banks, which can be designed completely in the frequency domain. We discuss the digitization of affine shear filter banks and their implementations: the forward and backward digital affine shear transforms. Redundancy rate and computational complexity of digital affine shear transforms are also investigated in this paper. Numerical experiments and comparisons in image/video processing show the advantages of digital affine shear transforms over many other state-of-art directional multiscale representation systems.

  8. APPLICATION OF IMMUNOGLOBULIN-BINDING PROTEINS A, G, L IN THE AFFINITY CHROMATOGRAPHY

    OpenAIRE

    Sviatenko, О.; Gorbatiuk, O.; Vasylchenko, О.

    2014-01-01

    Proteins A, G and L are native or recombinant proteins of microbial origin that bind to mammalian immunoglobulins. Preferably recombinant variants of proteins A, G, L are used in biotechnology for affinity sorbents production. Сomparative characteristics of proteins A, G, L and affinity sorbents on the basis of them, advantages and disadvantages of these proteins application as ligands in the affinity chromatography are done. Analysis of proteins A, G, L properties is presented. Binding speci...

  9. Affine diffusions and related processes simulation, theory and applications

    CERN Document Server

    Alfonsi, Aurélien

    2015-01-01

    This book gives an overview of affine diffusions, from Ornstein-Uhlenbeck processes to Wishart processes and it considers some related diffusions such as Wright-Fisher processes. It focuses on different simulation schemes for these processes, especially second-order schemes for the weak error. It also presents some models, mostly in the field of finance, where these methods are relevant and provides some numerical experiments. The book explains the mathematical background to understand affine diffusions and analyze the accuracy of the schemes.  

  10. Theoretical outdoor noise propagation models: Application to practical predictions

    Science.gov (United States)

    Tuominen, H. T.; Lahti, T.

    1982-02-01

    The theoretical calculation approaches for outdoor noise propagation are reviewed. Possibilities for their application to practical engineering calculations are outlined. A calculation procedure, which is a combination and extension of several theoretical models, is described. Calculation examples are compared with the results of some propagation studies.

  11. Mechanics of Systems of Affine Bodies. Geometric Foundations and Applications in Dynamics of Structured Media

    CERN Document Server

    S\\lawianowski, J J; Martens, A; Go\\lubowska, B; zko, E E Ro\\

    2010-01-01

    In the present paper we investigate the mechanics of systems of affinely-rigid bodies, i.e., bodies rigid in the sense of affine geometry. Certain physical applications are possible in modelling of molecular crystals, granular media, and other physical objects. Particularly interesting are dynamical models invariant under the group underlying geometry of degrees of freedom. In contrary to the single body case there exist nontrivial potentials invariant under this group (left and right acting). The concept of relative (mutual) deformation tensors of pairs of affine bodies is discussed. Scalar invariants built of such tensors are constructed. There is an essential novelty in comparison to deformation scalars of single affine bodies, i.e., there exist affinely-invariant scalars of mutual deformations. Hence, the hierarchy of interaction models according to their invariance group, from Euclidean to affine ones, can be considered.

  12. Exact deformations of quantum groups; applications to the affine case

    CERN Document Server

    Frønsdal, Christian

    1996-01-01

    This paper continues our investigation of a class of generalized quantum groups. The ``standard" R-matrix was shown to be the unique solution of a very simple, linear recursion relation and the classical limit was obtained in the case of quantized Kac-Moody algebras of finite type. Here the standard R-matrix for generalized quantum groups is first examined in the case of quantized affine Kac-Moody algebras. The classical limit yields the standard affine r-matrices of Belavin and Drinfeld. Then, turning to the general case, we study the exact deformations of the standard R-matrix and the associated Hopf algebras. They are described as a generalized twist, R_\\epsilon = (F^t)^{-1}RF, where R is the standard R-matrix and F (a power series in the deformation parameter \\epsilon) is the solution of a linear recursion relation of the same type as that which determines R. Specializing again, to the case of quantized, affine Kac-Moody algebras, and taking the classical limit of these esoteric quantum groups, one re-dis...

  13. Application of Wave Propagation to Pyroshock Analysis

    OpenAIRE

    Gherlone, M.; D. Lomario; M. Mattone; R.Ruotolo

    2004-01-01

    Pyroshocks are high frequency transients due to pyrotechnic devices used in aerospace engineering in order to deploy solar arrays and antennae, separate subsystems from the spacecraft or separate the spacecraft itself from the base stage booster; their prediction is usually complex and very time consuming.The aim of this article is to investigate on the application of the analysis of transmission of waves in elastic media in order to predict the dynamic response to pyroshocks. The work is com...

  14. Applications of Error Propagation Analyses to Geochemical Calculation

    Institute of Scientific and Technical Information of China (English)

    徐伟彪; 饶纪龙

    1991-01-01

    Two examples are given for comparing applications and limitations of four methods which can be used to deal with error propagation in geochemical calculations.The examples indicate that the Monte Carlo method can also be employed to evaluate the effect of covariance.A special function of the method for covariance matrix shown here can reveal the correlations of middle variables relative to the independent primary variables.

  15. hwloc: a Generic Framework for Managing Hardware Affinities in HPC Applications

    OpenAIRE

    Broquedis, François; Clet-Ortega, Jérôme; Moreaud, Stéphanie; Furmento, Nathalie; Goglin, Brice; Mercier, Guillaume; Thibault, Samuel; Namyst, Raymond

    2010-01-01

    The increasing numbers of cores, shared caches and memory nodes within machines introduces a complex hardware topology. High-performance computing applications now have to carefully adapt their placement and behavior according to the underlying hierarchy of hardware resources and their software affinities. We introduce the Hardware Locality (hwloc) software which gathers hardware information about processors, caches, memory nodes and more, and exposes it to applications and runtime systems in...

  16. Acoustic Propagation Modeling for Marine Hydro-Kinetic Applications

    Science.gov (United States)

    Johnson, C. N.; Johnson, E.

    2014-12-01

    The combination of riverine, tidal, and wave energy have the potential to supply over one third of the United States' annual electricity demand. However, in order to deploy and test prototypes, and commercial installations, marine hydrokinetic (MHK) devices must meet strict regulatory guidelines that determine the maximum amount of noise that can be generated and sets particular thresholds for determining disturbance and injury caused by noise. An accurate model for predicting the propagation of a MHK source in a real-life hydro-acoustic environment has been established. This model will help promote the growth and viability of marine, water, and hydrokinetic energy by confidently assuring federal regulations are meet and harmful impacts to marine fish and wildlife are minimal. Paracousti, a finite difference solution to the acoustic equations, was originally developed for sound propagation in atmospheric environments and has been successfully validated for a number of different geophysical activities. The three-dimensional numerical implementation is advantageous over other acoustic propagation techniques for a MHK application where the domains of interest have complex 3D interactions from the seabed, banks, and other shallow water effects. A number of different cases for hydro-acoustic environments have been validated by both analytical and numerical results from canonical and benchmark problems. This includes a variety of hydrodynamic and physical environments that may be present in a potential MHK application including shallow and deep water, sloping, and canyon type bottoms, with varying sound speed and density profiles. With the model successfully validated for hydro-acoustic environments more complex and realistic MHK sources from turbines and/or arrays can be modeled.

  17. Implementations of back propagation algorithm in ecosystems applications

    Science.gov (United States)

    Ali, Khalda F.; Sulaiman, Riza; Elamir, Amir Mohamed

    2015-05-01

    Artificial Neural Networks (ANNs) have been applied to an increasing number of real world problems of considerable complexity. Their most important advantage is in solving problems which are too complex for conventional technologies, that do not have an algorithmic solutions or their algorithmic Solutions is too complex to be found. In general, because of their abstraction from the biological brain, ANNs are developed from concept that evolved in the late twentieth century neuro-physiological experiments on the cells of the human brain to overcome the perceived inadequacies with conventional ecological data analysis methods. ANNs have gained increasing attention in ecosystems applications, because of ANN's capacity to detect patterns in data through non-linear relationships, this characteristic confers them a superior predictive ability. In this research, ANNs is applied in an ecological system analysis. The neural networks use the well known Back Propagation (BP) Algorithm with the Delta Rule for adaptation of the system. The Back Propagation (BP) training Algorithm is an effective analytical method for adaptation of the ecosystems applications, the main reason because of their capacity to detect patterns in data through non-linear relationships. This characteristic confers them a superior predicting ability. The BP algorithm uses supervised learning, which means that we provide the algorithm with examples of the inputs and outputs we want the network to compute, and then the error is calculated. The idea of the back propagation algorithm is to reduce this error, until the ANNs learns the training data. The training begins with random weights, and the goal is to adjust them so that the error will be minimal. This research evaluated the use of artificial neural networks (ANNs) techniques in an ecological system analysis and modeling. The experimental results from this research demonstrate that an artificial neural network system can be trained to act as an expert

  18. Applicability of Parametrized Form of Fully Dressed Quark Propagator

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    According to extensive study of the Dyson-Schwinger equations for a fully dressed quark propagator in the "rainbow" approximation with an effective gluon propagator, a parametrized fully dressed confining quark propagator is suggested in this paper. The parametrized quark propagator describes a confined quark propagation in hadron, and is analytic everywhere in complex p2-plane and has no Lehmann representation. The vector and scalar self-energy functions [1 - Af(p2)] and [Bf(p2) - mf], dynamically running effective mass of quark Mf(p2) and the structure of non-local quark vacuum condensates as well as local quark vacuum condensates are predicted by use of the parametrized quark propagator. The results are compatible with other theoretical calculations.

  19. Applicability of deterministic propagation models for mobile operators

    NARCIS (Netherlands)

    Mantel, O.C.; Oostveen, J.C.; Popova, M.P.

    2007-01-01

    Deterministic propagation models based on ray tracing or ray launching are widely studied in the scientific literature, because of their high accuracy. Also many commercial propagation modelling tools include ray-based models. In spite of this, they are hardly used in commercial operations by cellul

  20. Application of a finite difference technique to thermal wave propagation

    Science.gov (United States)

    Baumeister, K. J.

    1975-01-01

    A finite difference formulation is presented for thermal wave propagation resulting from periodic heat sources. The numerical technique can handle complex problems that might result from variable thermal diffusivity, such as heat flow in the earth with ice and snow layers. In the numerical analysis, the continuous temperature field is represented by a series of grid points at which the temperature is separated into real and imaginary terms. Next, computer routines previously developed for acoustic wave propagation are utilized in the solution for the temperatures. The calculation procedure is illustrated for the case of thermal wave propagation in a uniform property semi-infinite medium.

  1. Propagation of Bessel beam for ground-to-space applications

    OpenAIRE

    Ituen, Iniabasi; Birch, Philip; Young, Rupert; Chatwin, Chris

    2015-01-01

    We model the propagation of Gaussian and Bessel beams from ground through 22km altitude of atmospheric turbulence. We observe the Bessel beam has better performance based on RMS intensity error and the captured beam power

  2. Fractional calculus with applications in mechanics wave propagation, impact and variational principles

    CERN Document Server

    Atanackovic, Teodor M; Stankovic, Bogoljub; Zorica, Du?an

    2014-01-01

    The books Fractional Calculus with Applications in Mechanics: Vibrations and Diffusion Processes and Fractional Calculus with Applications in Mechanics: Wave Propagation, Impact and Variational Principles contain various applications of fractional calculus to the fields of classical mechanics. Namely, the books study problems in fields such as viscoelasticity of fractional order, lateral vibrations of a rod of fractional order type, lateral vibrations of a rod positioned on fractional order viscoelastic foundations, diffusion-wave phenomena, heat conduction, wave propagation, forced oscillati

  3. The application of magnetic force differentiation for the measurement of the affinity of peptide libraries

    International Nuclear Information System (INIS)

    A new method has been developed for measuring the binding affinity of phage displayed peptides and a target protein using magnetic particles. The specific interaction between the phage displayed peptides and the target protein was subject to a force generated by the magnetic particle. The binding affinity was obtained by analyzing the force-bond lifetime

  4. Application of a constrained regularization method to extraction of affinity distributions: proton and metal binding to humic substances.

    Science.gov (United States)

    Orsetti, Silvia; Andrade, Estela María; Molina, Fernando V

    2009-08-15

    The binding of proton and metal cations to humic substances has been analyzed with a regularized fitting procedure (using the CONTIN software package) to extract conditional affinity distributions, valid at a given ionic strength, from binding (titration) curves. The procedure was previously tested with simulated titration curves using a simple bi-Gaussian model, the NICA-Donnan model, and the Stockholm humic model. Application to literature data for proton binding shows that in several cases the affinity distribution found is bimodal (carboxylic and phenolic sites) as usually assumed; however in other cases, specially for fulvic acids, a trimodal distribution is clearly discerned, with a smaller peak between the two noted above attributed to the presence of vicinal carboxylic groups. The analysis of metal binding curves has been performed in a few cases where the available data could be reliably processed, separating the proton affinity distribution and obtaining the conditional affinity spectra. For Cd(II) and Pb(II) a bimodal distribution is found, attributed in principle to mono- and bidentate binding, based on spectroscopic data. In the case of Cu(II), a more complex affinity distribution is found showing 3-4 peaks; this is consistent with spectroscopic studies, where different binding modes, up to tetradentate, have been observed. PMID:19477457

  5. Imaging by forward propagating the data: Theory and application

    KAUST Repository

    Zuberi, Akbar

    2013-02-27

    The forward (modelled) wavefield for conventional reverse time migration (RTM) is computed by extrapolating the wavefield from an estimated source wavelet. In the typical case of a smooth subsurface velocity, this wavefield lacks the components, including surface reflections, necessary to image multiples in the observed data. We, instead, introduce the concept of forward propagating the recorded data, including direct arrivals, as part of RTM. We analyse the influence of the main components of the data on the imaging process, which include direct arrivals, primaries and surface-related multiples. In our RTM methodology, this implies correlating the forward extrapolated recorded data wavefield with its reversely extrapolated version prior to applying the zero-lag cross-correlation imaging condition. The interaction of the data components with each other in the cross-correlation process will image primaries and multiples, as well as introduce cross-talk artefact terms. However, some of these artefacts are present in conventional RTM implementation and they tend to be relatively weak. In fact, for the surface seismic experiment, forward propagating the direct arrivals is almost equivalent to forward propagating a source and it tends to contribute the majority of the data imaging energy. In addition, primaries and multiples recorded in the data become multiples of one higher order. Forward propagating the recorded data to recreate the source will relieve us from the requirement of estimating the source function. It will also include near-surface information necessary to improve the image in areas with near-surface complexity. Data from a simple synthetic layered model, as well as the Marmousi model, are used to demonstrate some of these features. © 2013 European Association of Geoscientists & Engineers.

  6. Wave propagation in layered anisotropic media with application to composites

    CERN Document Server

    Nayfeh, AH

    1995-01-01

    Recent advances in the study of the dynamic behavior of layered materials in general, and laminated fibrous composites in particular, are presented in this book. The need to understand the microstructural behavior of such classes of materials has brought a new challenge to existing analytical tools. This book explores the fundamental question of how mechanical waves propagate and interact with layered anisotropic media. The chapters are organized in a logical sequence depending upon the complexity of the physical model and its mathematical treatment.

  7. PHARMACEUTICAL AND BIOMEDICAL APPLICATIONS OF AFFINITY CHROMATOGRAPHY: RECENT TRENDS AND DEVELOPMENTS

    OpenAIRE

    Hage, David S.; Anguizola, Jeanethe A.; Bi, Cong; Li, Rong; Matsuda, Ryan; Papastavros, Efthimia; Pfaunmiller, Erika; Vargas, John; Zheng, Xiwei

    2012-01-01

    Affinity chromatography is a separation technique that has become increasingly important in work with biological samples and pharmaceutical agents. This method is based on the use of a biologically-related agent as a stationary phase to selectively retain analytes or to study biological interactions. This review discusses the basic principles behind affinity chromatography and examines recent developments that have occurred in the use of this method for biomedical and pharmaceutical analysis....

  8. Preparation of Chitosan-coated Nylon Membranes and their Application as Affinity Membranes

    Institute of Scientific and Technical Information of China (English)

    Wei SHI; Feng Bao ZHANG; Guo Liang ZHANG

    2005-01-01

    Chitosan-coated nylon membranes which possess a large number of reactive groups of-CH2OH and -NH2 were prepared by coupling chitosan onto the nylon membrane. Then polylysine as ligand was also immobilized onto the composite membranes by 1, l′-carbonyldiimidazole activation to prepare affinity membranes for bilirubin adsorption. The results showed that these membranes exhibited high binding affinity capacities for bilirubin and the adsorption isotherm fitted the Freundlich model well.

  9. Bioanalytical applications of affinity-based nanotube membranes for sensing and separations

    Science.gov (United States)

    Caicedo, Hector Mario

    2008-11-01

    Nanotechnology has played an important role in the development of research and technology during the last two decades. The contribution of nanotechnology in different fields, along with the versatility of the constructed nanoscale materials, have made nanotechnology one of the most suitable tools to develop particular nanostructures to realize a desired function and application. A nanostructure is simply an entity at the nanometer scale with one, two or three dimensional features. Since nanotechnology covers a broad range of nanoscale materials, to simplify nanotechnology, it can be classified into two categories based on how the nanostructures are prepared: top-down and bottom-up. In the top-down methods, the nanostructures are constructed by chiseling larger bulk materials into entities of smaller size. Conversely, in the bottom-up case, small units are grown or assembled into their desired size and shape. The nanoporous materials specifically have attracted a lot of attention because they can be used for the synthesis of a variety of functional nanostructures of great usefulness in technology. These porous nanostructures usually combine many of the advantages of the top-down and bottom-up methodologies such as flexibility, size controllability, and cost. The research presented in this work utilizes nanoporous membranes to develop porous nanostructured platforms with potential applications in sensing and separations. In particular, this work is centered in fundamental studies for bioanalytical applications of affinity-based nanotube membranes for sensing and separations. A bottom-up methodology like the template synthesis was used to produce silica nanotubes inside of the pores of alumina membrane. The functionalization of the inside walls of these silica nanotube membranes allowed control of the functional behavior and properties of the nanostructured membrane during membrane-based separations and sensing. The general scheme of the work presented here, is

  10. Emergent properties of nanosensor arrays: applications for monitoring IgG affinity distributions, weakly affined hypermannosylation, and colony selection for biomanufacturing.

    Science.gov (United States)

    Reuel, Nigel F; Grassbaugh, Brittany; Kruss, Sebastian; Mundy, J Zachary; Opel, Cary; Ogunniyi, Adebola O; Egodage, Kamal; Wahl, Ramon; Helk, Bernhard; Zhang, Jingqing; Kalcioglu, Z Ilke; Tvrdy, Kevin; Bellisario, Darin O; Mu, Bin; Blake, Steven S; Van Vliet, Krystyn J; Love, J Christopher; Wittrup, Karl Dane; Strano, Michael S

    2013-09-24

    It is widely recognized that an array of addressable sensors can be multiplexed for the label-free detection of a library of analytes. However, such arrays have useful properties that emerge from the ensemble, even when monofunctionalized. As examples, we show that an array of nanosensors can estimate the mean and variance of the observed dissociation constant (KD), using three different examples of binding IgG with Protein A as the recognition site, including polyclonal human IgG (KD μ = 19 μM, σ(2) = 1000 mM(2)), murine IgG (KD μ = 4.3 nM, σ(2) = 3 μM(2)), and human IgG from CHO cells (KD μ = 2.5 nM, σ(2) = 0.01 μM(2)). Second, we show that an array of nanosensors can uniquely monitor weakly affined analyte interactions via the increased number of observed interactions. One application involves monitoring the metabolically induced hypermannosylation of human IgG from CHO using PSA-lectin conjugated sensor arrays where temporal glycosylation patterns are measured and compared. Finally, the array of sensors can also spatially map the local production of an analyte from cellular biosynthesis. As an example, we rank productivity of IgG-producing HEK colonies cultured directly on the array of nanosensors itself. PMID:23909808

  11. Applications of on-line weak affinity interactions in free solution capillary electrophoresis

    DEFF Research Database (Denmark)

    Heegaard, Niels H H; Nissen, Mogens H; Chen, David D Y

    2002-01-01

    The impressive selectivity offered by capillary electrophoresis can in some cases be further increased when ligands or additives that engage in weak affinity interactions with one or more of the separated analytes are added to the electrophoresis buffer. This on-line affinity capillary...... enantiomers and on using capillary electrophoresis to characterize such interactions quantitatively. We describe the equations for binding isotherms, illustrate how selectivity can be manipulated by varying the additive concentrations, and show how the methods may be used to estimate binding constants. On......-line affinity capillary electrophoresis methods are especially valuable for enantiomeric separations and for functional characterization of the contents of biological samples that are only available in minute quantities....

  12. Architecture of high-affinity unnatural-base DNA aptamers toward pharmaceutical applications

    OpenAIRE

    Ken-ichiro Matsunaga; Michiko Kimoto; Charlotte Hanson; Michael Sanford; Young, Howard A.; Ichiro Hirao

    2015-01-01

    We present a remodeling method for high-affinity unnatural-base DNA aptamers to augment their thermal stability and nuclease resistance, for use as drug candidates targeting specific proteins. Introducing a unique mini-hairpin DNA provides robust stability to unnatural-base DNA aptamers generated by SELEX using genetic alphabet expansion, without reducing their high affinity. By this method, >80% of the remodeled DNA aptamer targeting interferon-γ (K D of 33 pM) survived in human serum at 37 ...

  13. Application of radiation grafted media for lectin affinity separation and urease immobilization: A novel approach to tumor therapy and renal disease diagnosis

    Science.gov (United States)

    Müller-Schulte, D.; Daschek, W.

    1995-09-01

    Carriers modified by synergistic radiation grafting are used as affinity media for the separation of a lectin from a mistletoe extract. The grafted supports show distinctly superior properties when compared to conventional affinity media. The application of these carriers as urease immobilization support incorporated in a conductimetric bioreactor for urea analysis as potential diagnostic device in renal diseases is also described.

  14. Application of radiation grafted media for lectin affinity separation and urease immobilization: a novel approach to tumor therapy and renal disease diagnosis

    Energy Technology Data Exchange (ETDEWEB)

    Mueller-Schulte, D. [Institut fuer Anorganische Chemie, Aachen (Germany); Daschek, W. [Kuratorium fuer Heimdialyse, Aachen (Germany)

    1995-10-01

    Carriers modified by synergistic radiation grafting are used as affinity media for the separation of a lectin from a mistletoe extract. The grafted supports show distinctly superior properties when compared to conventional affinity media. The application of these carriers as urease immobilization support incorporated in a conductimetric bioreactor for urea analysis as potential diagnostic device in renal diseases is also described. (Author).

  15. Application of radiation grafted media for lectin affinity separation and urease immobilization: a novel approach to tumor therapy and renal disease diagnosis

    International Nuclear Information System (INIS)

    Carriers modified by synergistic radiation grafting are used as affinity media for the separation of a lectin from a mistletoe extract. The grafted supports show distinctly superior properties when compared to conventional affinity media. The application of these carriers as urease immobilization support incorporated in a conductimetric bioreactor for urea analysis as potential diagnostic device in renal diseases is also described. (author)

  16. Application of monolithic affinity HPLC column for rapid determination of malt glycoproteins

    OpenAIRE

    Benkovská, D. (Dagmar); Flodrová, D. (Dana); Bobálová, J. (Janette)

    2013-01-01

    The aim of this study was to optimize separation and enrichment of barley malt glycoproteins on a monolithic ConA affinity HPLC column. ConA-bound proteins were separated on SDS-PAGE and identified using MALDI-TOF/TOF MS after chymotryptic digestion. Our proteomic analysis allowed successful determination of several putative malt glycoproteins.

  17. A Multi-Model Approach for Uncertainty Propagation and Model Calibration in CFD Applications

    CERN Document Server

    Wang, Jian-xun; Xiao, Heng

    2015-01-01

    Proper quantification and propagation of uncertainties in computational simulations are of critical importance. This issue is especially challenging for CFD applications. A particular obstacle for uncertainty quantifications in CFD problems is the large model discrepancies associated with the CFD models used for uncertainty propagation. Neglecting or improperly representing the model discrepancies leads to inaccurate and distorted uncertainty distribution for the Quantities of Interest. High-fidelity models, being accurate yet expensive, can accommodate only a small ensemble of simulations and thus lead to large interpolation errors and/or sampling errors; low-fidelity models can propagate a large ensemble, but can introduce large modeling errors. In this work, we propose a multi-model strategy to account for the influences of model discrepancies in uncertainty propagation and to reduce their impact on the predictions. Specifically, we take advantage of CFD models of multiple fidelities to estimate the model ...

  18. Application of Ni(II-assisted peptide bond hydrolysis to non-enzymatic affinity tag removal.

    Directory of Open Access Journals (Sweden)

    Edyta Kopera

    Full Text Available In this study, we demonstrate a non-enzymatic method for hydrolytic peptide bond cleavage, applied to the removal of an affinity tag from a recombinant fusion protein, SPI2-SRHWAP-His(6. This method is based on a highly specific Ni(II reaction with (S/TXHZ peptide sequences. It can be applied for the protein attached to an affinity column or to the unbound protein in solution. We studied the effect of pH, temperature and Ni(II concentration on the efficacy of cleavage and developed an analytical protocol, which provides active protein with a 90% yield and ∼100% purity. The method works well in the presence of non-ionic detergents, DTT and GuHCl, therefore providing a viable alternative for currently used techniques.

  19. Application of superparamagnetic microspheres for affinity adsorption and purification of glutathione

    Science.gov (United States)

    Wang, Qiang; Guan, Yueping; Yang, Mingzhu

    2012-10-01

    The superparamagnetic poly-(MA-DVB) microspheres with micron size were synthesized by the modified suspension polymerization method. Adsorption of glutathione by magnetic poly-(MA-DVB) microspheres with IDA-copper was investigated. The effect of solution pH value, affinity adsorption and desorption of glutathione was studied. The results showed that the optimum pH value for glutathione adsorption was found at pH=3.5, the maximum capacity for glutathione of magnetic poly-(MA-DVB) microspheres was estimated at 42.4 mg/g by fitting the experimental data to the Langmuir equation. The adsorption equilibrium of glutathione was obtained in about 10 min and the adsorbed glutathione was desorbed from the magnetic microspheres in about 30 min using NaCl buffer solution. The magnetic microspheres could be repeatedly utilized for the affinity adsorption of glutathione.

  20. Moringa oleifera lectin and binding affinity to humic acids : application to water treatment

    OpenAIRE

    Santos, Andréa F. S.; Luz, Luciana A.; Cunha, M. G. C.; Paiva, Patrícia M.G.; Teixeira, J.A.; Brito, A. G.; R. Nogueira; L. C. B. B. Coelho

    2007-01-01

    Humic acids, natural organic matter, constitute a problem in water treatment; they react with chlorine forming undesirable disinfection byproducts. The aim of this work was the purification of a saline soluble Moringa oleifera lectin (SSMoL) and characterization of its affinity to humic acids. SSMoL isolation included extraction of seed flour, saline fractionation and guar gel chromatography. Hemagglutinating activity (HA) of extract (E), fraction (0-60F) and SSMoL was assessed...

  1. Soliton Propagation in nonlinear optical fibers : theory and application

    OpenAIRE

    Goy, David A.

    1987-01-01

    A survey of research in nonlinear optical fibers is given. Important background concepts are introduced and explained. Present and future applications of nonlinear optical fibers arc reviewed. A mathematical model of a nonlinear optical fiber is developed using a coupled-mode theory approach, and methods of solving nonlinear partial differential equations arc discussed. A detailed history of research in the field is given, and recommendations for future research are made.

  2. Affinity capillary electrophoresis and its application to investigation of noncovalent interactions of (bio)molecules

    Czech Academy of Sciences Publication Activity Database

    Kašička, Václav; Štěpánová, Sille; Konášová, Renáta; Růžička, Martin

    Rožnov pod Radhoštěm: Česká chromatografická škola, 2015. O9. [Česká chromatografická škola HPLC 2015. 03.05.2015-06.05.2015, Rožnov pod Radhoštěm] R&D Projects: GA ČR(CZ) GA13-17224S Institutional support: RVO:61388963 Keywords : affinity capillary electrophoresis * noncovalent interactions * binding constants Subject RIV: CB - Analytical Chemistry, Separation

  3. [Preparation of novel magnetic dextran affinity adsorbents and their application to purify urokinase].

    Science.gov (United States)

    Dong, Y S; Liang, F; Yu, X Y; Guo, L A; Chang, J H

    2001-01-01

    The reverse phase suspension and embedment technique were adopted to prepare magnetic dextran microsphere (MDMS). The dispersion medium was mixture of some organic solvents. Span-80 was used as stabilizer. The aqueous dextran with magnetic fluid was suspended in dispersion medium with epichlorohydrin as cross-linking reagent. The mixture was stirred for 30 minutes at room temperature and then heated at 70 degrees C for 4 hours, MDMS was thus obtained. MDMS was activated by epichlorohydrin on which 6-aminohexanoic acid, glycine or ethylene diamine was bonded as spacers. Then it was coupled with p-aminobenzamide, L-arginine methyl ester or guanidohexanoic acid and five magnetic affinity adsorbents were prepared. The MDMS was polydisperse particles with the size of 50-300 meshes and the content of Fe3O4 was about 6.2 per cent in the MDMS. Influence of some parameters such as viscosity and density of organic phase, the volume ratio of organic and aqueous phase, the quantity of surfactant and stirring speed on preparing MDMS was studied. Magnetic affinity adsorbents were used to purify crude urokinase in a bath mode and the effect of coupling reagents and ligands on results of purification was discussed. The bioactivity recovery was 40.0 to 60.7 per cent, the purification-fold was between 14.9 and 32.8, and the adsorptive capacity varies from 89 mg to 121 mg per milliliter of adsorbent. PMID:12541840

  4. Application of superparamagnetic microspheres for affinity adsorption and purification of glutathione

    Energy Technology Data Exchange (ETDEWEB)

    Wang Qiang [School of Materials Science and Engineering, University of Science and Technology Beijing, Beijing 100083 (China); Guan Yueping, E-mail: ypguan@mater.ustb.edu.cn [School of Materials Science and Engineering, University of Science and Technology Beijing, Beijing 100083 (China); Yang Mingzhu [School of Materials Science and Engineering, University of Science and Technology Beijing, Beijing 100083 (China)

    2012-10-15

    The superparamagnetic poly-(MA-DVB) microspheres with micron size were synthesized by the modified suspension polymerization method. Adsorption of glutathione by magnetic poly-(MA-DVB) microspheres with IDA-copper was investigated. The effect of solution pH value, affinity adsorption and desorption of glutathione was studied. The results showed that the optimum pH value for glutathione adsorption was found at pH=3.5, the maximum capacity for glutathione of magnetic poly-(MA-DVB) microspheres was estimated at 42.4 mg/g by fitting the experimental data to the Langmuir equation. The adsorption equilibrium of glutathione was obtained in about 10 min and the adsorbed glutathione was desorbed from the magnetic microspheres in about 30 min using NaCl buffer solution. The magnetic microspheres could be repeatedly utilized for the affinity adsorption of glutathione. - Highlights: Black-Right-Pointing-Pointer The magnetic microsphere with surface IDA-Cu groups was synthesized. Black-Right-Pointing-Pointer The magnetic microspheres were applied for adsorption of GSH. Black-Right-Pointing-Pointer The adsorption-desorption of glutathione was investigated. Black-Right-Pointing-Pointer The maximum adsorption capacity of GSH was fitted at 42.4 mg/g.

  5. Application of superparamagnetic microspheres for affinity adsorption and purification of glutathione

    International Nuclear Information System (INIS)

    The superparamagnetic poly-(MA–DVB) microspheres with micron size were synthesized by the modified suspension polymerization method. Adsorption of glutathione by magnetic poly-(MA–DVB) microspheres with IDA-copper was investigated. The effect of solution pH value, affinity adsorption and desorption of glutathione was studied. The results showed that the optimum pH value for glutathione adsorption was found at pH=3.5, the maximum capacity for glutathione of magnetic poly-(MA–DVB) microspheres was estimated at 42.4 mg/g by fitting the experimental data to the Langmuir equation. The adsorption equilibrium of glutathione was obtained in about 10 min and the adsorbed glutathione was desorbed from the magnetic microspheres in about 30 min using NaCl buffer solution. The magnetic microspheres could be repeatedly utilized for the affinity adsorption of glutathione. - Highlights: ► The magnetic microsphere with surface IDA–Cu groups was synthesized. ► The magnetic microspheres were applied for adsorption of GSH. ► The adsorption–desorption of glutathione was investigated. ► The maximum adsorption capacity of GSH was fitted at 42.4 mg/g.

  6. Experimental Investigation of Radio Signal Propagation in Scientific Facilities for Telerobotic Applications

    OpenAIRE

    Ramviyas Parasuraman; Keith Kershaw; Manuel Ferre

    2013-01-01

    Understanding the radio signal transmission characteristics in the environment where the telerobotic application is sought is a key part of achieving a reliable wireless communication link between a telerobot and a control station. In this paper, wireless communication requirements and a case study of a typical telerobotic application in an underground facility at CERN are presented. Then, the theoretical and experimental characteristics of radio propagation are investigated with respect to t...

  7. Affinity reagent technology development and application to rapid immunochromatographic pathogen detection

    Science.gov (United States)

    Sooter, Letha J.; Stratis-Cullum, Dimitra N.; Zhang, Yanting; Daugherty, Patrick S.; Soh, H. Tom; Pellegrino, Paul; Stagliano, Nancy

    2007-09-01

    Immunochromatography is a rapid, reliable, and cost effective method of detecting biowarfare agents. The format is similar to that of an over-the-counter pregnancy test. A sample is applied to one end of a cassette and then a control line, and possibly a sample line, are visualized at the other end of the cassette. The test is based upon a sandwich assay. For the control, a line of Protein A is immobilized on the membrane. Gold nanoparticle bound IgG flows through the membrane and binds the Protein A, creating a visible line on the membrane. For the sample, one epitope is immobilized on the membrane and another epitope is attached to gold nanoparticles. The sample binds gold bound epitope, travels through the membrane, and binds membrane bound epitope. The two epitopes are not cross-reactive, therefore a sample line is only visible if the sample is present. In order to efficiently screen for binders to a sample target, a novel, Continuous Magnetic Activated Cell Sorter (CMACS) has been developed on a disposable, microfluidic platform. The CMACS chip quickly sorts E. coli peptide libraries for target binders with high affinity. Peptide libraries, are composed of approximately ten million bacteria, each displaying a different peptide on their surface. The target of interest is conjugated to a micrometer sized magnetic particle. After the library and the target are incubated together to allow binding, the mixture is applied to the CMACS chip. In the presence of patterned nickel and an external magnet, separation occurs of the bead-bound bacteria from the bulk material. The bead fraction is added to bacterial growth media where any attached E. coli grow and divide. These cells are cloned, sequenced, and the peptides are assayed for target binding affinity. As a proof-of-principle, assays were developed for human C-reactive protein. More defense relevant targets are currently being pursued.

  8. Experimental Investigation of Radio Signal Propagation in Scientific Facilities for Telerobotic Applications

    Directory of Open Access Journals (Sweden)

    Ramviyas Parasuraman

    2013-10-01

    Full Text Available Understanding the radio signal transmission characteristics in the environment where the telerobotic application is sought is a key part of achieving a reliable wireless communication link between a telerobot and a control station. In this paper, wireless communication requirements and a case study of a typical telerobotic application in an underground facility at CERN are presented. Then, the theoretical and experimental characteristics of radio propagation are investigated with respect to time, distance, location and surrounding objects. Based on analysis of the experimental findings, we show how a commercial wireless system, such as Wi-Fi, can be made suitable for a case study application at CERN.

  9. Characterization of the galactomannans from Parkinsonia aculeata seeds and their application on affinity chromatography

    Directory of Open Access Journals (Sweden)

    Ivone Garros-Rosa

    2006-06-01

    Full Text Available Successive aqueous (10 ºC, 25 ºC and 80 ºC and alkaline (1M NaOH; 25 ºC extractions of milled Parkinsonia aculeata endosperms gave rise to four galactomannan fractions. These extractions furnished viscous galactomannans with Man:Gal ratios ranging from 3.1:1; 3.7:1; 4.9:1 and 6.1:1 (P1, P2, P3 and P4, respectively. Fraction P1 was used for structural studies by using methylation analysis, periodate oxidation and 13C-NMR. It showed a linear backbone of beta(1->4 linked D-mannose units, to which single alpha(1->6-linked D-galactose are attached. This galactomannan has Mw 775700 g/mol and intrinsic viscosity of 558 mL/g. The four fractions and the crude endosperm were treated with epichlorydrin and used as matrix for affinity chromatography. All columns tested showed ability to bind lectin samples. The efficiency is related to the degree and pattern of substitution of galactosyl units on the D-mannan backbone.

  10. Radio Wave Propagation in Curved Rectangular Tunnels at 5.8 GHz for Metro Applications

    OpenAIRE

    Masson, E.; COCHERIL, Y; COMBEAU, P; AVENEAU, S; BERBINEAU, M; VAUZELLE, R; FAYT, E

    2011-01-01

    The need for wireless communication systems is increasing in the transport domain. These systems have to be operational in every type of environment and particularly tunnels for metro applications. These ones can have rectangular, circular or arch-shaped cross section. Furthermore, they can be straight or curved. This paper presents a new method to model the radio wave propagation in straight tunnels with an arch-shaped cross section and in curved tunnels with a rectangular cross section. The...

  11. Markov propagation of allosteric effects in biomolecular systems: application to GroEL–GroES

    OpenAIRE

    Chennubhotla, Chakra; Bahar, Ivet

    2006-01-01

    We introduce a novel approach for elucidating the potential pathways of allosteric communication in biomolecular systems. The methodology, based on Markov propagation of ‘information' across the structure, permits us to partition the network of interactions into soft clusters distinguished by their coherent stochastics. Probabilistic participation of residues in these clusters defines the communication patterns inherent to the network architecture. Application to bacterial chaperonin complex ...

  12. Light propagation in the field of a moving axisymmetric body: theory and application to JUNO

    OpenAIRE

    Van Hees, A; Bertone, S.; Poncin-Lafitte, C. Le

    2014-01-01

    Given the extreme accuracy of modern space science, a precise relativistic modeling of observations is required. We use the Time Transfer Functions formalism to study light propagation in the field of uniformly moving axisymmetric bodies, which extends the field of application of previous works. We first present a space-time metric adapted to describe the geometry of an ensemble of uniformly moving bodies. Then, we show that the expression of the Time Transfer Functions in the field of a unif...

  13. Development and Applications of Benchmark Examples for Static Delamination Propagation Predictions

    Science.gov (United States)

    Krueger, Ronald

    2013-01-01

    The development and application of benchmark examples for the assessment of quasistatic delamination propagation capabilities was demonstrated for ANSYS (TradeMark) and Abaqus/Standard (TradeMark). The examples selected were based on finite element models of Double Cantilever Beam (DCB) and Mixed-Mode Bending (MMB) specimens. First, quasi-static benchmark results were created based on an approach developed previously. Second, the delamination was allowed to propagate under quasi-static loading from its initial location using the automated procedure implemented in ANSYS (TradeMark) and Abaqus/Standard (TradeMark). Input control parameters were varied to study the effect on the computed delamination propagation. Overall, the benchmarking procedure proved valuable by highlighting the issues associated with choosing the appropriate input parameters for the VCCT implementations in ANSYS® and Abaqus/Standard®. However, further assessment for mixed-mode delamination fatigue onset and growth is required. Additionally studies should include the assessment of the propagation capabilities in more complex specimens and on a structural level.

  14. Understanding the Physical Optics Phenomena by Using a Digital Application for Light Propagation

    Energy Technology Data Exchange (ETDEWEB)

    Sierra-Sosa, Daniel-Esteban; Angel-Toro, Luciano, E-mail: dsierras@eafit.edu.co, E-mail: langel@eafit.edu.co [Grupo de Optica Aplicada, Universidad EAFIT, 1 Medellin (Colombia)

    2011-01-01

    Understanding the light propagation on the basis of the Huygens-Fresnel principle stands for a fundamental factor for deeper comprehension of different physical optics related phenomena like diffraction, self-imaging, image formation, Fourier analysis and spatial filtering. This constitutes the physical approach of the Fourier optics whose principles and applications have been developed since the 1950's. Both for analytical and digital applications purposes, light propagation can be formulated in terms of the Fresnel Integral Transform. In this work, a digital optics application based on the implementation of the Discrete Fresnel Transform (DFT), and addressed to serve as a tool for applications in didactics of optics is presented. This tool allows, at a basic and intermediate learning level, exercising with the identification of basic phenomena, and observing changes associated with modifications of physical parameters. This is achieved by using a friendly graphic user interface (GUI). It also assists the user in the development of his capacity for abstracting and predicting the characteristics of more complicated phenomena. At an upper level of learning, the application could be used to favor a deeper comprehension of involved physics and models, and experimenting with new models and configurations. To achieve this, two characteristics of the didactic tool were taken into account when designing it. First, all physical operations, ranging from simple diffraction experiments to digital holography and interferometry, were developed on the basis of the more fundamental concept of light propagation. Second, the algorithm was conceived to be easily upgradable due its modular architecture based in MATLAB (registered) software environment. Typical results are presented and briefly discussed in connection with didactics of optics.

  15. Understanding the Physical Optics Phenomena by Using a Digital Application for Light Propagation

    Science.gov (United States)

    Sierra-Sosa, Daniel-Esteban; Ángel-Toro, Luciano

    2011-01-01

    Understanding the light propagation on the basis of the Huygens-Fresnel principle stands for a fundamental factor for deeper comprehension of different physical optics related phenomena like diffraction, self-imaging, image formation, Fourier analysis and spatial filtering. This constitutes the physical approach of the Fourier optics whose principles and applications have been developed since the 1950's. Both for analytical and digital applications purposes, light propagation can be formulated in terms of the Fresnel Integral Transform. In this work, a digital optics application based on the implementation of the Discrete Fresnel Transform (DFT), and addressed to serve as a tool for applications in didactics of optics is presented. This tool allows, at a basic and intermediate learning level, exercising with the identification of basic phenomena, and observing changes associated with modifications of physical parameters. This is achieved by using a friendly graphic user interface (GUI). It also assists the user in the development of his capacity for abstracting and predicting the characteristics of more complicated phenomena. At an upper level of learning, the application could be used to favor a deeper comprehension of involved physics and models, and experimenting with new models and configurations. To achieve this, two characteristics of the didactic tool were taken into account when designing it. First, all physical operations, ranging from simple diffraction experiments to digital holography and interferometry, were developed on the basis of the more fundamental concept of light propagation. Second, the algorithm was conceived to be easily upgradable due its modular architecture based in MATLAB® software environment. Typical results are presented and briefly discussed in connection with didactics of optics.

  16. Understanding the Physical Optics Phenomena by Using a Digital Application for Light Propagation

    International Nuclear Information System (INIS)

    Understanding the light propagation on the basis of the Huygens-Fresnel principle stands for a fundamental factor for deeper comprehension of different physical optics related phenomena like diffraction, self-imaging, image formation, Fourier analysis and spatial filtering. This constitutes the physical approach of the Fourier optics whose principles and applications have been developed since the 1950's. Both for analytical and digital applications purposes, light propagation can be formulated in terms of the Fresnel Integral Transform. In this work, a digital optics application based on the implementation of the Discrete Fresnel Transform (DFT), and addressed to serve as a tool for applications in didactics of optics is presented. This tool allows, at a basic and intermediate learning level, exercising with the identification of basic phenomena, and observing changes associated with modifications of physical parameters. This is achieved by using a friendly graphic user interface (GUI). It also assists the user in the development of his capacity for abstracting and predicting the characteristics of more complicated phenomena. At an upper level of learning, the application could be used to favor a deeper comprehension of involved physics and models, and experimenting with new models and configurations. To achieve this, two characteristics of the didactic tool were taken into account when designing it. First, all physical operations, ranging from simple diffraction experiments to digital holography and interferometry, were developed on the basis of the more fundamental concept of light propagation. Second, the algorithm was conceived to be easily upgradable due its modular architecture based in MATLAB (registered) software environment. Typical results are presented and briefly discussed in connection with didactics of optics.

  17. Propagation of Nonlinear Waves in Waveguides and Application to Nondestructive Stress Measurement

    Science.gov (United States)

    Nucera, Claudio

    Propagation of nonlinear waves in waveguides is a field that has received an ever increasing interest in the last few decades. Nonlinear guided waves are excellent candidates for interrogating long waveguide like structures because they combine high sensitivity to structural conditions, typical of nonlinear parameters, with large inspection ranges, characteristic of wave propagation in bounded media. The primary topic of this dissertation is the analysis of ultrasonic waves, including ultrasonic guided waves, propagating in their nonlinear regime and their application to structural health monitoring problems, particularly the measurement of thermal stress in Continuous Welded Rail (CWR). Following an overview of basic physical principles generating nonlinearities in ultrasonic wave propagation, the case of higher-harmonic generation in multi-mode and dispersive guided waves is examined in more detail. A numerical framework is developed in order to predict favorable higher-order generation conditions (i.e. specific guided modes and frequencies) for waveguides of arbitrary cross-sections. This model is applied to various benchmark cases of complex structures. The nonlinear wave propagation model is then applied to the case of a constrained railroad track (CWR) subjected to thermal variations. This study is a direct response to the key need within the railroad transportation community to develop a technique able to measure thermal stresses in CWR, or determine the rail temperature corresponding to a null thermal stress (Neutral Temperature -- NT). The numerical simulation phase concludes with a numerical study performed using ABAQUS commercial finite element package. These analyses were crucial in predicting the evolution of the nonlinear parameter beta with thermal stress level acting in the rail. A novel physical model, based on interatomic potential, was developed to explain the origin of nonlinear wave propagation under constrained thermal expansion. In fact

  18. New application of temperature-dependent modelling of high temperature superconductors: Quench propagation and pulse magnetization

    Science.gov (United States)

    Zhang, Min; Matsuda, Koichi; Coombs, T. A.

    2012-08-01

    We present temperature-dependent modeling of high-temperature superconductors (HTS) to understand HTS electromagnetic phenomena where temperature fluctuation plays a nontrivial role. Thermal physics is introduced into the well-developed H-formulation model, and the effect of temperature-dependent parameters is considered. Based on the model, we perform extensive studies on two important HTS applications: quench propagation and pulse magnetization. A micrometer-scale quench model of HTS coil is developed, which can be used to estimate minimum quench energy and normal zone propagation velocity inside the coil. In addition, we study the influence of inhomogeneity of HTS bulk during pulse magnetization. We demonstrate how the inhomogeneous distribution of critical current inside the bulk results in varying degrees of heat dissipation and uniformity of final trapped field. The temperature-dependent model is proven to be a powerful tool to study the thermally coupled electromagnetic phenomena of HTS.

  19. Application of a convergent, composite coupled cluster approach to bound state, adiabatic electron affinities in atoms and small molecules.

    Science.gov (United States)

    Feller, David

    2016-01-01

    Benchmark quality adiabatic electron affinities for a collection of atoms and small molecules were obtained with the Feller-Peterson-Dixon composite coupled cluster theory method. Prior applications of this method demonstrated its ability to accurately predict atomization energies/heats of formation for more than 170 molecules. In the current work, the 1-particle expansion involved very large correlation consistent basis sets, ranging up to aug-cc-pV9Z (aug-cc-pV10Z for H and H2), with the goal of minimizing the residual basis set truncation error that must otherwise be approximated with extrapolation formulas. The n-particle expansion begins with coupled cluster calculations through iterative single and double excitations plus a quasiperturbative treatment of "connected" triple excitations (CCSD(T)) pushed to the complete basis set limit followed by CCSDT, CCSDTQ, or CCSDTQ5 corrections. Due to the small size of the systems examined here, it was possible in many cases to extend the n-particle expansion to the full configuration interaction wave function limit. Additional, smaller corrections associated with core/valence correlation, scalar relativity, anharmonic zero point vibrational energies, and non-adiabatic effects were also included. The overall root mean square (RMS) deviation was 0.005 eV (0.12 kcal/mol). This level of agreement was comparable to what was found with molecular heats of formation. A 95% confidence level corresponds to roughly twice the RMS value or 0.01 eV. While the atomic electron affinities are known experimentally to high accuracy, the molecular values are less certain. This contributes to the difficulty of gauging the accuracy of the theoretical results. A limited number of electron affinities were determined with the explicitly correlated CCSD(T)-F12b method. After extending the VnZ-F12 orbital basis sets with additional diffuse functions, the F12b method was found to accurately reproduce the best F/F(-) value obtained with standard

  20. Application of a convergent, composite coupled cluster approach to bound state, adiabatic electron affinities in atoms and small molecules

    Science.gov (United States)

    Feller, David

    2016-01-01

    Benchmark quality adiabatic electron affinities for a collection of atoms and small molecules were obtained with the Feller-Peterson-Dixon composite coupled cluster theory method. Prior applications of this method demonstrated its ability to accurately predict atomization energies/heats of formation for more than 170 molecules. In the current work, the 1-particle expansion involved very large correlation consistent basis sets, ranging up to aug-cc-pV9Z (aug-cc-pV10Z for H and H2), with the goal of minimizing the residual basis set truncation error that must otherwise be approximated with extrapolation formulas. The n-particle expansion begins with coupled cluster calculations through iterative single and double excitations plus a quasiperturbative treatment of "connected" triple excitations (CCSD(T)) pushed to the complete basis set limit followed by CCSDT, CCSDTQ, or CCSDTQ5 corrections. Due to the small size of the systems examined here, it was possible in many cases to extend the n-particle expansion to the full configuration interaction wave function limit. Additional, smaller corrections associated with core/valence correlation, scalar relativity, anharmonic zero point vibrational energies, and non-adiabatic effects were also included. The overall root mean square (RMS) deviation was 0.005 eV (0.12 kcal/mol). This level of agreement was comparable to what was found with molecular heats of formation. A 95% confidence level corresponds to roughly twice the RMS value or 0.01 eV. While the atomic electron affinities are known experimentally to high accuracy, the molecular values are less certain. This contributes to the difficulty of gauging the accuracy of the theoretical results. A limited number of electron affinities were determined with the explicitly correlated CCSD(T)-F12b method. After extending the VnZ-F12 orbital basis sets with additional diffuse functions, the F12b method was found to accurately reproduce the best F/F- value obtained with standard

  1. Applicability assessment of plug weld to ITER vacuum vessel by crack propagation analysis

    International Nuclear Information System (INIS)

    In order to improve the fabricability of the vacuum vessel (VV) of International Thermonuclear Experimental Reactor (ITER), applicability of plug weld between VV outer shell and stiffening ribs/blanket support housings has been assessed using crack propagation analysis for the plug weld. The ITER VV is a double-wall structure of inner and outer shells with ribs and housings between the shells. For the fabrication of VV, ribs and housings are welded to outer shell after welding to inner shell. A lot of weld grooves should be adjusted for welding outer shell. The plug weld is that outer shells with slit at the weld region are set on ribs/housings then outer shells are welded to them by filling the slits with weld metal. The plug weld can allow larger tolerance of weld groove gap than ordinary butt weld. However, un-welded lengths parallel to outer sell surface remain in the plug weld region. It is necessary to evaluate the allowable un-welded length to apply the plug weld to ITER VV fabrication. For the assessment, the allowable un-welded lengths have been calculated by crack propagation analyses for load conditions, conservatively assuming the un-welded region is a crack. In the analyses, firstly allowable crack lengths are calculated from the stresses of the weld region. Then assuming initial crack length, crack propagation is calculated during operation period. Allowable initial crack lengths are determined on the condition that the propagated cracks should not exceed the allowable crack lengths. The analyses have been carried out for typical inboard straight region and inboard upper curved region with the maximum housing stress. The allowable initial cracks of ribs are estimated to be 8.8mm and 38mm for the rib and the housing, respectively, considering inspection error of 4.4mm. Plug weld between outer shell and ribs/housings could be applicable. (author)

  2. Application of a new dual localization-affinity purification tag reveals novel aspects of protein kinase biology in Aspergillus nidulans.

    Directory of Open Access Journals (Sweden)

    Colin P De Souza

    Full Text Available Filamentous fungi occupy critical environmental niches and have numerous beneficial industrial applications but devastating effects as pathogens and agents of food spoilage. As regulators of essentially all biological processes protein kinases have been intensively studied but how they regulate the often unique biology of filamentous fungi is not completely understood. Significant understanding of filamentous fungal biology has come from the study of the model organism Aspergillus nidulans using a combination of molecular genetics, biochemistry, cell biology and genomic approaches. Here we describe dual localization-affinity purification (DLAP tags enabling endogenous N or C-terminal protein tagging for localization and biochemical studies in A. nidulans. To establish DLAP tag utility we endogenously tagged 17 protein kinases for analysis by live cell imaging and affinity purification. Proteomic analysis of purifications by mass spectrometry confirmed association of the CotA and NimXCdk1 kinases with known binding partners and verified a predicted interaction of the SldABub1/R1 spindle assembly checkpoint kinase with SldBBub3. We demonstrate that the single TOR kinase of A. nidulans locates to vacuoles and vesicles, suggesting that the function of endomembranes as major TOR cellular hubs is conserved in filamentous fungi. Comparative analysis revealed 7 kinases with mitotic specific locations including An-Cdc7 which unexpectedly located to mitotic spindle pole bodies (SPBs, the first such localization described for this family of DNA replication kinases. We show that the SepH septation kinase locates to SPBs specifically in the basal region of apical cells in a biphasic manner during mitosis and again during septation. This results in gradients of SepH between G1 SPBs which shift along hyphae as each septum forms. We propose that SepH regulates the septation initiation network (SIN specifically at SPBs in the basal region of G1 cells and that

  3. Affine Data-Flow Graphs for the Synthesis of Hard Real-Time Applications

    OpenAIRE

    Bouakaz, Adnan; Talpin, Jean-Pierre; Vitek, Jan

    2012-01-01

    Data-flow models ease the task of constructing feasible schedules of computations and communications of high-assurance embedded applications. One key and open issue is how to schedule data-flow graphs so as to minimize the buffering of data and reduce end-to-end latency. Most of the proposed techniques in that respect are based on either static or data-driven scheduling. This paper looks at the problem in a different way by considering priority-driven preemptive scheduling theory of periodic ...

  4. SNR enhancement for composite application using multiple Doppler vibrometers based laser ultrasonic propagation imager

    Science.gov (United States)

    Truong, Thanh Chung; Lee, Jung Ryul

    2016-09-01

    In recent years, the technology of using laser ultrasonic propagation imaging for damage visualization of composite structures were applied to real-world applications. Among many choices of sensor for the Ultrasonic Propagation Imager, the laser interferometry has several advantages: it is non-invasive, and portable, and with extraordinarily long-range measurement. However, the critical issue with interferometry sensing is its low signal-to-noise ratio (SNR), where the background noise can mask the damage-induced waves and making it impossible to identify the damages, especially in composite structures. In this paper, we propose a hardware-based SNR enhancement technique using multiple Laser Doppler Vibrometers (LDVs). The out-of-plane mode of ultrasonic signals are measured by multiple LDVs at a common sensing point and then averaged in real time. We showed that the SNR enhancement in experiments was consistent with the theoretical prediction, and also the test results showed a clear improvement for damage visualization of structures using Ultrasonic Wave Propagation Imaging and Ultrasonic Wavenumber Imaging algorithms.

  5. Providing affinity

    DEFF Research Database (Denmark)

    Guglielmi, Michel; Johannesen, Hl

    , Essex, Hertfordshire, Norfolk and Suffolk. Research found that there was a lack of identity or sense of belonging and nothing anchoring people to the region as a whole. Common affinity is somehow forced to the people of East England and thereby we came to the conclusion that a single landmark or a...... a sense of belonging to people sharing deterritorialized synchronic experiences. But at the same time, the immersion experience is highly low tech and desperately analog, mainly based on fabulation, cartoons, and mushrooms growing in local forests. It ultimately appeals to the experienced sense of...

  6. Software Failure Propagation Prevention: Application of the Guidelines and Recommendations of Proof of Concept Pilots for Ground and Flight Software

    Science.gov (United States)

    Hann, Mark; Rodriguez Dapena, Patricia; Moretti, Davide

    2014-08-01

    Software Failure Propagation Prevention (SFPP) project aims to establish the conditions and identify the methods, techniques and tools to be used to ensure prevention of failure propagation between software products and components of different criticality category, both on-board and in the ground segment, under an ESA R&D contract [2]. This paper describes the development of the "Guidelines And Recommendations For Prevention Of Software Failure Propagation" [6] and the application of these guidelines in two proof of concept pilots. These pilots demonstrate the application of the techniques and methods described in the guidelines to two existing space software applications, one for ground segment and one for flight segment. This paper follows on from [1], which described the analysis of software failure propagation, the review of current practices inside and outside the European Space domain.

  7. Classification of neocortical interneurons using affinity propagation

    OpenAIRE

    Santana, Roberto; McGarry, Laura M.; Bielza, Concha; Larrañaga, Pedro; Yuste, Rafael

    2013-01-01

    In spite of over a century of research on cortical circuits, it is still unknown how many classes of cortical neurons exist. In fact, neuronal classification is a difficult problem because it is unclear how to designate a neuronal cell class and what are the best characteristics to define them. Recently, unsupervised classifications using cluster analysis based on morphological, physiological, or molecular characteristics, have provided quantitative and unbiased identification of distinct neu...

  8. Classification of neocortical interneurons using affinity propagation

    OpenAIRE

    Roberto eSantana; Laura eMcGarry; Concha eBielza; Pedro eLarrañaga; Rafael eYuste

    2013-01-01

    In spite of over a century of research on cortical circuits, it is still unknown how many classes of cortical neurons exist. Neuronal classification has been a difficult problem because it is unclear what a neuronal cell class actually is and what are the best characteristics are to define them. Recently, unsupervised classifications using cluster analysis based on morphological, physiological or molecular characteristics, when applied to selected datasets, have provided quantitative and unbi...

  9. Illumination of interior spaces by bended hollow light guides: Application of the theoretical light propagation method

    Energy Technology Data Exchange (ETDEWEB)

    Darula, Stanislav; Kocifaj, Miroslav; Kittler, Richard [ICA, Slovak Academy of Sciences, Bratislava (Slovakia); Kundracik, Frantisek [Department of Experimental Physics, FMPI, Comenius University, Bratislava (Slovakia)

    2010-12-15

    To ensure comfort and healthy conditions in interior spaces the thermal, acoustics and daylight factors of the environment have to be considered in the building design. Due to effective energy performance in buildings the new technology and applications also in daylight engineering are sought such as tubular light guides. These allow the transport of natural light into the building core reducing energy consumption. A lot of installations with various geometrical and optical properties can be applied in real buildings. The simplest set of tubular light guide consists of a transparent cupola, direct tube with high reflected inner surface and a ceiling cover or diffuser redistributing light into the interior. Such vertical tubular guide is often used on flat roofs. When the roof construction is inclined a bend in the light guide system has to be installed. In this case the cupola is set on the sloped roof which collects sunlight and skylight from the seen part of the sky hemisphere as well as that reflected from the ground and opposite facades. In comparison with the vertical tube some additional light losses and distortions of the propagated light have to be expected in bended tubular light guides. Recently the theoretical model of light propagation was already published and its applications are presented in this study solving illuminance distributions on the ceiling cover interface and further illuminance distribution on the working plane in the interior. (author)

  10. Comparison between different uncertainty propagation methods in multivariate analysis: An application in the bivariate case

    Energy Technology Data Exchange (ETDEWEB)

    Mullor, R. [Dpto. Estadistica e Investigacion Operativa, Universidad Alicante (Spain); Sanchez, A., E-mail: aisanche@eio.upv.e [Dpto. Estadistica e Investigacion Operativa Aplicadas y Calidad, Universidad Politecnica Valencia, Camino de Vera s/n 46022 (Spain); Martorell, S. [Dpto. Ingenieria Quimica y Nuclear, Universidad Politecnica Valencia (Spain); Martinez-Alzamora, N. [Dpto. Estadistica e Investigacion Operativa Aplicadas y Calidad, Universidad Politecnica Valencia, Camino de Vera s/n 46022 (Spain)

    2011-06-15

    Safety related systems performance optimization is classically based on quantifying the effects that testing and maintenance activities have on reliability and cost (R+C). However, R+C quantification is often incomplete in the sense that important uncertainties may not be considered. An important number of studies have been published in the last decade in the field of R+C based optimization considering uncertainties. They have demonstrated that inclusion of uncertainties in the optimization brings the decision maker insights concerning how uncertain the R+C results are and how this uncertainty does matter as it can result in differences in the outcome of the decision making process. Several methods of uncertainty propagation based on the theory of tolerance regions have been proposed in the literature depending on the particular characteristics of the variables in the output and their relations. In this context, the objective of this paper focuses on the application of non-parametric and parametric methods to analyze uncertainty propagation, which will be implemented on a multi-objective optimization problem where reliability and cost act as decision criteria and maintenance intervals act as decision variables. Finally, a comparison of results of these applications and the conclusions obtained are presented.

  11. Comparison between different uncertainty propagation methods in multivariate analysis: An application in the bivariate case

    International Nuclear Information System (INIS)

    Safety related systems performance optimization is classically based on quantifying the effects that testing and maintenance activities have on reliability and cost (R+C). However, R+C quantification is often incomplete in the sense that important uncertainties may not be considered. An important number of studies have been published in the last decade in the field of R+C based optimization considering uncertainties. They have demonstrated that inclusion of uncertainties in the optimization brings the decision maker insights concerning how uncertain the R+C results are and how this uncertainty does matter as it can result in differences in the outcome of the decision making process. Several methods of uncertainty propagation based on the theory of tolerance regions have been proposed in the literature depending on the particular characteristics of the variables in the output and their relations. In this context, the objective of this paper focuses on the application of non-parametric and parametric methods to analyze uncertainty propagation, which will be implemented on a multi-objective optimization problem where reliability and cost act as decision criteria and maintenance intervals act as decision variables. Finally, a comparison of results of these applications and the conclusions obtained are presented.

  12. Analysis of the quench propagation along Nb3Sn Rutherford cables with the THELMA code. Part II: application to the quench longitudinal propagation

    CERN Document Server

    Manfreda, G.; Bajas, H.; Perez, J.C.

    2016-01-01

    To improve the technology of the new generation of accelerator magnets, prototypes are being manufactured and tested in several laboratories. In parallel, many numerical analyses are being carried out to predict the magnets behaviour and interpret the experimental results. This paper focuses on the quench propagation velocity, which is a crucial parameter as regards the energy dissipation along the magnet conductor. The THELMA code, originally developed for cable-in-conduit conductors for fusion magnets, has been used to study such quench propagation. To this purpose, new code modules have been added to describe the Rutherford cable geometry, the material non-linear thermal properties and to describe the thermal conduction problem in transient regime. THELMA can describe the Rutherford cable at the strand level, modelling both the electrical and thermal contact resistances between strands and enabling the analysis of the effects of local hot spots and quench heaters. This paper describes the model application...

  13. Switching strategy based on homotopy continuation for non-regular affine systems with application in induction motor control

    OpenAIRE

    Borisevich, Alex; Schullerus, Gernot

    2012-01-01

    In the article the problem of output setpoint tracking for affine non-linear system is considered. Presented approach combines state feedback linearization and homotopy numerical continuation in subspaces of phase space where feedback linearization fails. The method of numerical parameter continuation for solving systems of nonlinear equations is generalized to control affine non-linear dynamical systems. The illustrative example of control of MIMO system which is not static feedback lineariz...

  14. Can we beat the biotin-avidin pair?: cucurbit[7]uril-based ultrahigh affinity host-guest complexes and their applications.

    Science.gov (United States)

    Shetty, Dinesh; Khedkar, Jayshree K; Park, Kyeng Min; Kim, Kimoon

    2015-12-01

    The design of synthetic, monovalent host-guest molecular recognition pairs is still challenging and of particular interest to inquire into the limits of the affinity that can be achieved with designed systems. In this regard, cucurbit[7]uril (CB[7]), an important member of the host family cucurbit[n]uril (CB[n], n = 5-8, 10, 14), has attracted much attention because of its ability to form ultra-stable complexes with multiple guests. The strong hydrophobic effect between the host cavity and guests, ion-dipole and dipole-dipole interactions of guests with CB portals helps in cooperative and multiple noncovalent interactions that are essential for realizing such strong complexations. These highly selective, strong yet dynamic interactions can be exploited in many applications including affinity chromatography, biomolecule immobilization, protein isolation, biological catalysis, and sensor technologies. In this review, we summarize the progress in the development of high affinity guests for CB[7], factors affecting the stability of complexes, theoretical insights, and the utility of these high affinity pairs in different challenging applications. PMID:26434388

  15. Evaluating propagation method performance over time with Bayesian updating: an application to incubator testing

    Science.gov (United States)

    Converse, Sarah J.; Chandler, J. N.; Olsen, G.H.; Shafer, C. C.

    2010-01-01

    In captive-rearing programs, small sample sizes can limit the quality of information on performance of propagation methods. Bayesian updating can be used to increase information on method performance over time. We demonstrate an application to incubator testing at USGS Patuxent Wildlife Research Center. A new type of incubator was purchased for use in the whooping crane (Grus americana) propagation program, which produces birds for release. We tested the new incubator for reliability, using sandhill crane (Grus canadensis) eggs as surrogates. We determined that the new incubator should result in hatching rates no more than 5% lower than the available incubators, with 95% confidence, before it would be used to incubate whooping crane eggs. In 2007, 5 healthy chicks hatched from 12 eggs in the new incubator, and 2 hatched from 5 in an available incubator, for a median posterior difference of method, where a veterinarian determined whether eggs produced chicks that, at hatching, had no apparent health problems that would impede future release. We used the 2007 estimates as priors in the 2008 analysis. In 2008, 7 normal chicks hatched from 15 eggs in the new incubator, and 11 hatched from 15 in an available incubator, for a median posterior difference of 19%, with 95% credible interval (-8%, 44%). The increased sample size has increased our understanding of incubator performance. While additional data will be collected, at this time the new incubator does not appear adequate for use with whooping crane eggs.

  16. Fluorescence excitation and propagation through brain phantom gelatins: measurements and potential applications

    Science.gov (United States)

    Allison, S. W.; Gillies, G. T.

    2010-08-01

    We have investigated the utility of 0.6% agarose gels as surrogate materials for brain tissues in optical propagation studies for possible diagnostic and therapeutic applications. Centimeter-scale layers of the gel exhibited a Beer's law attenuation factor, δ, of ≈0.2 mm-1 for incident illumination via a pulsed LED (100 Hz) at 405 nm. This result was different by only about a factor of 3 from the effective penetration depth at similar wavelengths through in vitro samples of the gray (cortical) matter of human brain, as measured by others. Then, films of the thermographic phosphors La2O2S:Eu, Mg4FGeO6:Mn, YAG:Cr and variants of the latter were formed on aluminum substrates and the fluorescence of these samples was stimulated and observed through layers of the gel up to 4 cm thick. In all cases, the fluorescence was easily excited and distinguishable above the background. The results demonstrate that this gel might serve as an inexpensive and robust test bed for exploratory studies of neurological modalities involving propagation of optical signals within brain tissues.

  17. Self-propagating high-temperature synthesis of MnZn-ferrites for inductor applications

    International Nuclear Information System (INIS)

    The self-propagating high-temperature synthesis (SHS) route is evaluated for the synthesis of MnZn-ferrite powders that are subsequently processed towards the manufacturing of high initial magnetic permeability polycrystalline specimens for inductor applications. The conditions for the synthesis of particular phases by SHS reactions between iron metal and oxide powders were optimized and the effects of the synthesis parameters on ignition and propagation characteristics were studied. By 'fine-tuning' the synthesis parameters, products of a wide spectrum of phases from single-phase, pure and well crystallized (MnxZny)Fe2+δO4 to the oxide of the divalent metals (Mnx'Zny'Fe1-x'-y')O could be controllably synthesized. Advantages of the synthesis route are demonstrated by tests on properties of merit on final products: combustion powder products were subsequently pressed to torroids, sintered and characterized with respect to their magnetic properties, in comparison to conventionally synthesized samples of the same composition. When sintered under appropriate schedules of oxygen partial pressure profile to avoid phase oxidation at 600 deg. C, SHS powders could be processed to high permeability MnZn-ferrites. At equal average particle sizes SHS powders exhibit higher reactivity and grain growth compared to conventionally synthesized powders. This advantage can be utilized in the manufacturing of high permeability MnZn-ferrites with shorter firing schedules and thus all associated advantages in terms of productivity, production costs or zinc evaporation loss

  18. Infinite transitivity on affine varieties

    OpenAIRE

    Arzhantsev, Ivan; Flenner, Hubert; Kaliman, Shulim; Kutzschebauch, Frank; ZAIDENBERG, MIKHAIL

    2012-01-01

    In this note we survey recent results on automorphisms of affine algebraic varieties, infinitely transitive group actions and flexibility. We present related constructions and examples, and discuss geometric applications and open problems.

  19. Signal transceiver transit times and propagation delay corrections for ranging and geo-referencing applications

    CERN Document Server

    Kaufmann, P; Pamboukian, S V D; de Morais, R Vilhena

    2012-01-01

    The changes in phase, time and frequency suffered by signals when retransmitted by a remote and inaccessible transponder and the propagation delays are major constraints to obtain accurate ranging measurements in various related applications. We present a new method and system to determine these delays for every single pulsed signal transmission. The process utilizes four ground-based reference stations, synchronized in time and installed at well known geodesic coordinates. The repeater station is located within the fields of view common to the four reference bases, such as in a platform transported by a satellite, balloon, aircraft, etc. Signal transmitted by one of the reference bases is retransmitted by the transponder, received back by the four bases, producing four ranging measurements which are processed to determine uniquely the time delays undergone in every retransmission process. The repeater's positions with respect to each group of three out of four reference bases are given by a system of equatio...

  20. Parallel Reservoir Simulations with Sparse Grid Techniques and Applications to Wormhole Propagation

    KAUST Repository

    Wu, Yuanqing

    2015-09-08

    In this work, two topics of reservoir simulations are discussed. The first topic is the two-phase compositional flow simulation in hydrocarbon reservoir. The major obstacle that impedes the applicability of the simulation code is the long run time of the simulation procedure, and thus speeding up the simulation code is necessary. Two means are demonstrated to address the problem: parallelism in physical space and the application of sparse grids in parameter space. The parallel code can gain satisfactory scalability, and the sparse grids can remove the bottleneck of flash calculations. Instead of carrying out the flash calculation in each time step of the simulation, a sparse grid approximation of all possible results of the flash calculation is generated before the simulation. Then the constructed surrogate model is evaluated to approximate the flash calculation results during the simulation. The second topic is the wormhole propagation simulation in carbonate reservoir. In this work, different from the traditional simulation technique relying on the Darcy framework, we propose a new framework called Darcy-Brinkman-Forchheimer framework to simulate wormhole propagation. Furthermore, to process the large quantity of cells in the simulation grid and shorten the long simulation time of the traditional serial code, standard domain-based parallelism is employed, using the Hypre multigrid library. In addition to that, a new technique called “experimenting field approach” to set coefficients in the model equations is introduced. In the 2D dissolution experiments, different configurations of wormholes and a series of properties simulated by both frameworks are compared. We conclude that the numerical results of the DBF framework are more like wormholes and more stable than the Darcy framework, which is a demonstration of the advantages of the DBF framework. The scalability of the parallel code is also evaluated, and good scalability can be achieved. Finally, a mixed

  1. A higher-order nonlocal elasticity and strain gradient theory and its applications in wave propagation

    Science.gov (United States)

    Lim, C. W.; Zhang, G.; Reddy, J. N.

    2015-05-01

    approach. Two additional kinds of parameters, the higher-order nonlocal parameters and the nonlocal gradient length coefficients are introduced to account for the size-dependent characteristics of nonlocal gradient materials at nanoscale. To illustrate its application values, the theory is applied for wave propagation in a nonlocal strain gradient system and the new dispersion relations derived are presented through examples for wave propagating in Euler-Bernoulli and Timoshenko nanobeams. The numerical results based on the new nonlocal strain gradient theory reveal some new findings with respect to lattice dynamics and wave propagation experiment that could not be matched by both the classical nonlocal stress model and the contemporary strain gradient theory. Thus, this higher-order nonlocal strain gradient model provides an explanation to some observations in the classical and nonlocal stress theories as well as the strain gradient theory in these aspects.

  2. Light propagation through weakly scattering media: a study of Monte Carlo vs. diffusion theory with application to neuroimaging

    Science.gov (United States)

    Ancora, Daniele; Zacharopoulos, Athanasios; Ripoll, Jorge; Zacharakis, Giannis

    2015-07-01

    One of the major challenges within Optical Imaging, photon propagation through clear layers embedded between scattering tissues, can be now efficiently modelled in real-time thanks to the Monte Carlo approach based on GPU. Because of its nature, the photon propagation problem can be very easily parallelized and ran on low cost hardware, avoiding the need for expensive Super Computers. A comparison between Diffusion and MC photon propagation theory is presented in this work with application to neuroimaging, investigating low scattering regions in a mouse-like phantom. Regions such as the Cerebral Spinal Fluid, are currently not taken into account in the classical computational models because of the impossibility to accurately simulate light propagation using fast Diffusive Equation approaches, leading to inaccuracies during the reconstruction process. The goal of the study presented here, is to reduce and further improve the computation accuracy of the reconstructed solution in a highly realistic scenario in the case of neuroimaging in preclinical mouse models.

  3. Titanium dioxide as chemo-affinity chromatographic sorbent of biomolecular compounds - Applications in acidic modification-specific proteomics

    DEFF Research Database (Denmark)

    Engholm-Keller, Kasper; Larsen, Martin R

    2011-01-01

    matrices for further characterization is affinity chromatography, which relies on the specific interaction between an analyte in solution and a solid adsorbent. Titanium dioxide-based affinity chromatography has proven to be a versatile tool in enrichment of various compounds such as phosphorylated...... biomolecules due to its unique ion and ligand exchange properties and high stability towards pH and temperature. Recently, titanium dioxide chromatography was introduced in proteomics as a highly specific method for enriching phosphorylated peptides - a method, which has been widely adapted by the field of...

  4. Investigations of temporal reshaping during filamentary propagation with application to impulsive raman spectroscopy

    Science.gov (United States)

    Odhner, Johanan

    Femtosecond laser filamentation in gaseous media is a new source of broadband, ultrashort radiation that has the potential for application to many fields of research. In this dissertation filamentation is studied with a view to understanding the underlying physics governing the formation and propagation dynamics of filamentation, as well as to developing a method for vibrational spectroscopy based on the filament-induced impulsive vibrational excitation of molecules in the filamentation region. In pursuit of a better understanding of the underlying physical processes driving filamentation, the development of a new method for characterizing high intensity ultrashort laser pulses is presented, wherein two laser beams generate a transient grating in a noble gas, causing the pulse undergoing filamentation to diffract from the grating. Measuring the spectrum as a function of time delay between the filament and probe beams generates a spectrogram that can be inverted to recover the spectral and temporal phase and amplitude of the filamentary pulse. This technique enables measurement of the filamentary pulse in its native environment, offering a window into the pulse dynamics as a function of propagation distance. The intrinsic pulse shortening observed during filamentation leads to the impulsive excitation of molecular vibrations, which can be used to understand the dynamics of filamentation as well. Combined measurements of the longitudinally-resolved filament Raman spectrum, power spectrum, and fluorescence intensity confirm the propagation dynamics inferred from pulse measurements and show that filamentation provides a viable route to impulsive vibrational spectroscopy at remote distances from the laser source. The technique is applied to thermometry in air and in flames, and an analytical expression is derived to describe the short-time dynamics of the rovibrational wave-packet dispersion experienced by diatomic molecules in the wave of the filament. It is found that

  5. Deformation-based atrophy computation by surface propagation and its application to Alzheimer's disease.

    Science.gov (United States)

    Pai, Akshay; Sporring, Jon; Darkner, Sune; Dam, Erik B; Lillholm, Martin; Jørgensen, Dan; Oh, Joonmi; Chen, Gennan; Suhy, Joyce; Sørensen, Lauge; Nielsen, Mads

    2016-01-01

    Obtaining regional volume changes from a deformation field is more precise when using simplex counting (SC) compared with Jacobian integration (JI) due to the numerics involved in the latter. Although SC has been proposed before, numerical properties underpinning the method and a thorough evaluation of the method against JI is missing in the literature. The contributions of this paper are: (a) we propose surface propagation (SP)-a simplification to SC that significantly reduces its computational complexity; (b) we will derive the orders of approximation of SP which can also be extended to SC. In the experiments, we will begin by empirically showing that SP is indeed nearly identical to SC, and that both methods are more stable than JI in presence of moderate to large deformation noise. Since SC and SP are identical, we consider SP as a representative of both the methods for a practical evaluation against JI. In a real application on Alzheimer's disease neuroimaging initiative data, we show the following: (a) SP produces whole brain and medial temporal lobe atrophy numbers that are significantly better than JI at separating between normal controls and Alzheimer's disease patients; (b) SP produces disease group atrophy differences comparable to or better than those obtained using FreeSurfer, demonstrating the validity of the obtained clinical results. Finally, in a reproducibility study, we show that the voxel-wise application of SP yields significantly lower variance when compared to JI. PMID:27014717

  6. An explicitly solvated full atomistic model of the cardiac thin filament and application on the calcium binding affinity effects from familial hypertrophic cardiomyopathy linked mutations

    Science.gov (United States)

    Williams, Michael; Schwartz, Steven

    2015-03-01

    The previous version of our cardiac thin filament (CTF) model consisted of the troponin complex (cTn), two coiled-coil dimers of tropomyosin (Tm), and 29 actin units. We now present the newest revision of the model to include explicit solvation. The model was developed to continue our study of genetic mutations in the CTF proteins which are linked to familial hypertrophic cardiomyopathies. Binding of calcium to the cTnC subunit causes subtle conformational changes to propagate through the cTnC to the cTnI subunit which then detaches from actin. Conformational changes propagate through to the cTnT subunit, which allows Tm to move into the open position along actin, leading to muscle contraction. Calcium disassociation allows for the reverse to occur, which results in muscle relaxation. The inclusion of explicit TIP3 water solvation allows for the model to get better individual local solvent to protein interactions; which are important when observing the N-lobe calcium binding pocket of the cTnC. We are able to compare in silica and in vitro experimental results to better understand the physiological effects from mutants, such as the R92L/W and F110V/I of the cTnT, on the calcium binding affinity compared to the wild type.

  7. Minimization of the root of a quadratic functional under a system of affine equality constraints with application to portfolio management

    Science.gov (United States)

    Landsman, Zinoviy

    2008-10-01

    We present an explicit closed form solution of the problem of minimizing the root of a quadratic functional subject to a system of affine constraints. The result generalizes Z. Landsman, Minimization of the root of a quadratic functional under an affine equality constraint, J. Comput. Appl. Math. 2007, to appear, see sciencedirect.com/science/journal/03770427>, articles in press, where the optimization problem was solved under only one linear constraint. This is of interest for solving significant problems pertaining to financial economics as well as some classes of feasibility and optimization problems which frequently occur in tomography and other fields. The results are illustrated in the problem of optimal portfolio selection and the particular case when the expected return of finance portfolio is certain is discussed.

  8. Surface plasmon resonance applications in drug discovery : with an emphasis on small molecule and low affinity systems

    OpenAIRE

    Ricklin, Daniel

    2005-01-01

    Surface plasmon resonance (SPR) technology evolved into a key technology for the characterization of biomolecular interactions, and is integrated in many stages of the drug discovery process. Despite recent developments in the area of instrument sensitivity and data processing, working with small molecules and low affinity interactions still remains a major challenge. The aim of this thesis was therefore to evaluate and develop different methods for the accurate and reliable de...

  9. Two-dimensional complex source point solutions: application to propagationally invariant beams, optical fiber modes, planar waveguides, and plasmonic devices.

    Science.gov (United States)

    Sheppard, Colin J R; Kou, Shan S; Lin, Jiao

    2014-12-01

    Highly convergent beam modes in two dimensions are considered based on rigorous solutions of the scalar wave (Helmholtz) equation, using the complex source point formalism. The modes are applicable to planar waveguide or surface plasmonic structures and nearly concentric microcavity resonator modes in two dimensions. A novel solution is that of a vortex beam, where the direction of propagation is in the plane of the vortex. The modes also can be used as a basis for the cross section of propagationally invariant beams in three dimensions and bow-tie-shaped optical fiber modes. PMID:25606756

  10. Spectral-based Propagation Schemes for Time-Dependent Quantum Systems with Application to Carbon Nanotubes

    CERN Document Server

    Chen, Zuojing

    2010-01-01

    Effective modeling and numerical spectral-based propagation schemes are proposed for addressing the challenges in time-dependent quantum simulations of systems ranging from atoms, molecules, and nanostructures to emerging nanoelectronic devices. While time-dependent Hamiltonian problems can be formally solved by propagating the solutions along tiny simulation time steps, a direct numerical treatment is often considered too computationally demanding. In this paper, however, we propose to go beyond these limitations by introducing high-performance numerical propagation schemes to compute the solution of the time-ordered evolution operator. In addition to the direct Hamiltonian diagonalizations that can be efficiently performed using the new eigenvalue solver FEAST, we have designed a Gaussian propagation scheme and a basis transformed propagation scheme (BTPS) which allow to reduce considerably the simulation times needed by time intervals. It is outlined that BTPS offers the best computational efficiency allow...

  11. Application of radiation induced mutations in the improvement of vegetatively propagated crops

    International Nuclear Information System (INIS)

    Full text: The NOBEL PEACE PRIZE, 2005, award to the International Atomic Energy Agency (IAEA) is a recognition to the contributions of nuclear technique applications, in a tough face off with plant genetic engineering, in sustainable food production, improvement of nutrition balance, and food security. Nuclear technology is effective in generating genetic variability, selection of useful mutants and multiplication in large numbers. A wide range of mutants of various vegetatively propagated crops have been isolated (www.iaea.org). In vitro plant regeneration is very much genotypic dependent, type of explants; culture medium, plant growth regulators etc. Somatic embryogenesis is an ideal system for the selection and multiplication of mutants and also would save time to dissociate chimeras. The role of molecular tools has become very crucial in understanding the molecular basis of differentiation and genetic variability; gene identification, isolation, and transfer. The new gene discovery with reverse and forward genetics will open the way for developing functional genomic plant breeding. There is no opposition from the consumers to consume food products derived from mutants, unlike strong opposition to the consumption of genetically modified (GM) food. Moreover, bio-safety regulations are not applied to mutants, however, strictly adhere to GM food. Tomorrow's agriculture will be under tremendous pressure for feeding the world's population in the face of climatic changes, salt and drought stresses, and biotic stresses; and mutagenesis would be the answer

  12. Light propagation in the field of a moving axisymmetric body: theory and application to Juno

    CERN Document Server

    Hees, A; Poncin-Lafitte, C Le

    2014-01-01

    Given the extreme accuracy of modern space science, a precise relativistic modeling of observations is required. We use the Time Transfer Functions formalism to study light propagation in the field of moving axisymmetric bodies, which extends the field of application of previous works. We first derive a space-time metric adapted to describe the geometry of an ensemble of moving bodies. Then, we show that the expression of the Time Transfer Functions in the field of a uniformly moving body can be easily derived from its well-known expression in a stationary field by using a change of variables. We also give a general expression of the Time Transfer Function in the case where the motion of the body is arbitrary. This result is given in the form of an integral easily computable numerically. We also provide the derivatives of the Time Transfer Function in this case, which are mandatory to compute Doppler and astrometric observables. We particularize our results in the case of moving axisymmetric bodies. Finally, ...

  13. Numerical modelling of fire propagation: principles and applications at Electricite de France

    International Nuclear Information System (INIS)

    Electricite de France, wishing to limit the accidental unavailability of its nuclear plants and to ensure their safety rigorously takes particular care to reduce the risk of fire. In this context, the Heat Transfer and Aerodynamics Branch of the Research and Development Division has been in charge of the design of numerical tools to simulate the fire propagation in buildings since 1985. Its program is articulated towards three axes which include : the development of the MAGIC software program, the characterization of the combustibles present in power plants, the development of methods for the use of the computer codes in the design of plants. This paper gives on overview of the activity in progress in this research fields. It illustrates also the applications performed and anticipated at Electricite de France of the numerical simulation in fire safety design. We discuss at the end of it the limitations and the development factors of these tool use. One of the later is the association of MAGIC software and the FIVE method. (authors). 15 refs., 10 figs., 2 tabs

  14. Gaussian processes with built-in dimensionality reduction: Applications to high-dimensional uncertainty propagation

    Science.gov (United States)

    Tripathy, Rohit; Bilionis, Ilias; Gonzalez, Marcial

    2016-09-01

    Uncertainty quantification (UQ) tasks, such as model calibration, uncertainty propagation, and optimization under uncertainty, typically require several thousand evaluations of the underlying computer codes. To cope with the cost of simulations, one replaces the real response surface with a cheap surrogate based, e.g., on polynomial chaos expansions, neural networks, support vector machines, or Gaussian processes (GP). However, the number of simulations required to learn a generic multivariate response grows exponentially as the input dimension increases. This curse of dimensionality can only be addressed, if the response exhibits some special structure that can be discovered and exploited. A wide range of physical responses exhibit a special structure known as an active subspace (AS). An AS is a linear manifold of the stochastic space characterized by maximal response variation. The idea is that one should first identify this low dimensional manifold, project the high-dimensional input onto it, and then link the projection to the output. If the dimensionality of the AS is low enough, then learning the link function is a much easier problem than the original problem of learning a high-dimensional function. The classic approach to discovering the AS requires gradient information, a fact that severely limits its applicability. Furthermore, and partly because of its reliance to gradients, it is not able to handle noisy observations. The latter is an essential trait if one wants to be able to propagate uncertainty through stochastic simulators, e.g., through molecular dynamics codes. In this work, we develop a probabilistic version of AS which is gradient-free and robust to observational noise. Our approach relies on a novel Gaussian process regression with built-in dimensionality reduction. In particular, the AS is represented as an orthogonal projection matrix that serves as yet another covariance function hyper-parameter to be estimated from the data. To train the

  15. Affine functors and duality

    OpenAIRE

    J. Navarro; Sancho, C.; Sancho, P.

    2009-01-01

    A functor of sets $\\mathbb X$ over the category of $K$-commutative algebras is said to be an affine functor if its functor of functions, $\\mathbb A_{\\mathbb X}$, is reflexive and $\\mathbb X=\\Spec \\mathbb A_{\\mathbb X}$. We prove that affine functors are equal to a direct limit of affine schemes and that affine schemes, formal schemes, the completion of affine schemes along a closed subscheme, etc., are affine functors. Endowing an affine functor $\\mathbb X$ with a functor of monoids structure...

  16. Power Series Expansion of Propagator for Path Integral and Its Applications

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    In this paper we obtain a propagator of path integral for a harmonic oscillator and a driven harmonic oscillator by using the power series expansion. It is shown that our result for the harmonic oscillator is more exact than the previous one obtained with other approximation methods. By using the same method, we obtain a propagator of path integral for the driven harmonic oscillator, which does not have any exact expansion. The more exact propagators may improve the path integral results for these systems.

  17. Ray tracing propagation modeling for future small-cell and indoor applications: A review of current techniques

    Science.gov (United States)

    Fuschini, Franco; Vitucci, Enrico M.; Barbiroli, Marina; Falciasecca, Gabriele; Degli-Esposti, Vittorio

    2015-06-01

    Applied for the first time to mobile radio propagation modeling at the beginning of the nineties, ray tracing is now living a second youth. It is probably the best model to assist in the design and planning of future short-range, millimeter-wave wireless systems, where the more limited propagation environment with respect to UHF frequencies allows to overcome traditional high-CPU time limitations while the higher operating frequency makes ray-optics approximations less drastic and allows to achieve an unprecedented level of accuracy. An overview of ray tracing propagation modeling is given in this paper, with a special attention to future prospects and applications. In particular, frontiers of ray-based propagation modeling such as extension to diffuse scattering, multidimensional channel characterization, multiple-input multiple-output (MIMO) capacity assessments, and future applications such as real-time ray tracing are addressed in the paper with reference to the work recently carried out at the University of Bologna.

  18. Application of Compressed Sensing to 2-D Ultrasonic Propagation Imaging System data

    Energy Technology Data Exchange (ETDEWEB)

    Mascarenas, David D. [Los Alamos National Laboratory; Farrar, Charles R. [Los Alamos National Laboratory; Chong, See Yenn [Engineering Institute-Korea; Lee, J.R. [Engineering Institute-Korea; Park, Gyu Hae [Los Alamos National Laboratory; Flynn, Eric B. [Los Alamos National Laboratory

    2012-06-29

    The Ultrasonic Propagation Imaging (UPI) System is a unique, non-contact, laser-based ultrasonic excitation and measurement system developed for structural health monitoring applications. The UPI system imparts laser-induced ultrasonic excitations at user-defined locations on a structure of interest. The response of these excitations is then measured by piezoelectric transducers. By using appropriate data reconstruction techniques, a time-evolving image of the response can be generated. A representative measurement of a plate might contain 800x800 spatial data measurement locations and each measurement location might be sampled at 500 instances in time. The result is a total of 640,000 measurement locations and 320,000,000 unique measurements. This is clearly a very large set of data to collect, store in memory and process. The value of these ultrasonic response images for structural health monitoring applications makes tackling these challenges worthwhile. Recently compressed sensing has presented itself as a candidate solution for directly collecting relevant information from sparse, high-dimensional measurements. The main idea behind compressed sensing is that by directly collecting a relatively small number of coefficients it is possible to reconstruct the original measurement. The coefficients are obtained from linear combinations of (what would have been the original direct) measurements. Often compressed sensing research is simulated by generating compressed coefficients from conventionally collected measurements. The simulation approach is necessary because the direct collection of compressed coefficients often requires compressed sensing analog front-ends that are currently not commercially available. The ability of the UPI system to make measurements at user-defined locations presents a unique capability on which compressed measurement techniques may be directly applied. The application of compressed sensing techniques on this data holds the potential to

  19. Propagation of nonlinear waves in waveguides and application to nondestructive stress measurement

    OpenAIRE

    Nucera, Claudio

    2012-01-01

    Propagation of nonlinear waves in waveguides is a field that has received an ever increasing interest in the last few decades. Nonlinear guided waves are excellent candidates for interrogating long waveguide like structures because they combine high sensitivity to structural conditions, typical of nonlinear parameters, with large inspection ranges, characteristic of wave propagation in bounded media. The primary topic of this dissertation is the analysis of ultrasonic waves, including ultraso...

  20. Marine Atmospheric Surface Layer and Its Application to Electromagnetic Wave Propagation

    Science.gov (United States)

    Wang, Q.

    2015-12-01

    An important application of the atmospheric surface layer research is to characterize the near surface vertical gradients in temperature and humidity in order to predict radar and radio communication conditions in the environment. In this presentation, we will give an overview of a new research initiative funded under the Office of Naval Research (ONR) Multi-University Research Initiative (MURI): the Coupled Air-Sea Processes and EM Ducting Research (CASPER). The objective is to fully characterize the marine atmospheric boundary layer (MABL) as an electromagnetic (EM) propagation environment with the emphasis of spatial and temporal heterogeneities and surface wave/swell effects, both of which contravene the underlying assumptions of Monin-Obukhov Similarity Theory (MOST) used in coupled environmental forecast models. Furthermore, coastal variability in the inversion atop the MABL presents a challenge to forecast models and also causes practical issues in EM prediction models. These issues are the target of investigation of CASPER. CASPER measurement component includes two major field campaigns: CASPER-East (2015 Duck, NC) and CASPER-West (2018 southern California). This presentation will show the extensive measurements to be made during the CASPER -East field campaign with the focus on the marine atmospheric surface layer measurements with two research vessels, two research aircraft, surface flux buoy, wave gliders, ocean gliders, tethered balloons, and rawinsondes. Unlike previous research on the marine surface layer with the focus on surface fluxes and surface flux parameterization, CASPER field campaigns also emphasize of the surface layer profiles and the validation of the surface layer flux-profile relationship originally derived over land surfaces. Results from CASPER pilot experiment and preliminary results from CASPER-East field campaign will be discussed.

  1. Purification of a thermostable chitinase from Bacillus cereus by chitin affinity and its application in microbial community changes in soil.

    Science.gov (United States)

    Liang, Tzu-Wen; Hsieh, Tung-Yen; Wang, San-Lang

    2014-06-01

    A thermostable chitinase was purified by chitin affinity from the culture supernatant of Bacillus cereus TKU028 with shrimp head powder (SHP) as the sole carbon/nitrogen source. TKU028 chitinase was purified using a one-step affinity adsorbent system, and the molecular mass of TKU028 chitinase (approximately 40 kDa) was then determined using SDS-PAGE. The enzyme was stable for 60 min at temperatures below 60 °C and stable over a broad pH range of 4-9 for 60 min. In addition, the temporal changes of a bacterial community in mangrove river sediment of the Tamsui River with added SHP were also analysed by PCR-denaturing gradient gel electrophoresis to investigate the effects of B. cereus TKU028 on the degradation of SHP. The 6-week incubation sample of SHP and B. cereus TKU028-amended mangrove river sediment displayed the highest amount of biomass, reducing sugar and total sugar, and some variance of bacterial community composition existed in the soils. PMID:24342954

  2. β2-Adrenoceptor affinity chromatography and its application in the screening of the active compounds from Semen Armeniacae Amarum

    Institute of Scientific and Technical Information of China (English)

    ZHENG XiaoHui; ZHAO XinFeng; YANG Rong; WANG ShiXiang; WEI YinMao; ZHENG JianBin

    2008-01-01

    β2-Adrenoceptor (β2-AR) was purified from the rabbit lung tissue by sepharose-salbutamol affinity chromatographic column. To prepare the β2-AR stationary phase, β2-AR was evenly immobilized on the surface of macro-pore silica with a mild chemical coupling method through covalent bond. The reten-tion properties of β2-AR stationary phase were characterized by four ligands, salbutamol sulfate, noradrenaline bitartrate, adrenaline hydrochloride and propranolol hydrochloride, to establish the β2-AR affinity chromatography. Then, the method was used to screen the active compounds from the total extracts of Semen Armeniacae Amarum. The results showed that β2-AR on the surface of the sta-tionary phase could keep its original bioactivity and selectivity. Amygdalin retained in the chroma-tographic column was proved to be the active compound of the total extracts of Semen Armeniacae Amarum. Compared with the existing chromatographic screening approaches, this method showed a good stability and high selectivity. The active compounds which could interact with β2-AR in traditional Chinese medicine (TCM) could be screened efficiently by this method, providing a new way to screen the active compounds in complicated samples such as TCM.

  3. Radio wave propagation in curved rectangular tunnels at 5.8 GHz for metro applications, simulations and measurements

    OpenAIRE

    Masson, E.; COCHERIL, Y; COMBEAU, P; AVENEAU, L; BERBINEAU, M; VAUZELLE, R; FAYT, E

    2011-01-01

    8 pages International audience Nowadays, the need for wireless communication systems is increasing in transport domain. These systems have to be operational in every type of environment and particularly tunnels for metro applications. These ones can have rectangular, circular or arch-shaped cross section. Furthermore, they can be straight or curved. This article presents a new method to model the radio wave propagation in straight tunnels with an arch-shaped cross section and in curved ...

  4. Second-Order Perturbation Theory for Fractional Occupation Systems: Applications to Ionization Potential and Electron Affinity Calculations.

    Science.gov (United States)

    Su, Neil Qiang; Xu, Xin

    2016-05-10

    Recently, we have developed an integration approach for the calculations of ionization potentials (IPs) and electron affinities (EAs) of molecular systems at the level of second-order Møller-Plesset (MP2) (Su, N. Q.; Xu, X. J. Chem. Theory Comput. 11, 4677, 2015), where the full MP2 energy gradient with respect to the orbital occupation numbers was derived but only at integer occupations. The theory is completed here to cover the fractional occupation systems, such that Slater's transition state concept can be used to have accurate predictions of IPs and EAs. Antisymmetrized Goldstone diagrams have been employed for interpretations and better understanding of the derived equations, where two additional rules were introduced in the present work specifically for hole or particle lines with fractional occupation numbers. PMID:27010405

  5. Application of Benchmark Examples to Assess the Single and Mixed-Mode Static Delamination Propagation Capabilities in ANSYS

    Science.gov (United States)

    Krueger, Ronald

    2012-01-01

    The application of benchmark examples for the assessment of quasi-static delamination propagation capabilities is demonstrated for ANSYS. The examples are independent of the analysis software used and allow the assessment of the automated delamination propagation in commercial finite element codes based on the virtual crack closure technique (VCCT). The examples selected are based on two-dimensional finite element models of Double Cantilever Beam (DCB), End-Notched Flexure (ENF), Mixed-Mode Bending (MMB) and Single Leg Bending (SLB) specimens. First, the quasi-static benchmark examples were recreated for each specimen using the current implementation of VCCT in ANSYS . Second, the delamination was allowed to propagate under quasi-static loading from its initial location using the automated procedure implemented in the finite element software. Third, the load-displacement relationship from a propagation analysis and the benchmark results were compared, and good agreement could be achieved by selecting the appropriate input parameters. The benchmarking procedure proved valuable by highlighting the issues associated with choosing the input parameters of the particular implementation. Overall the results are encouraging, but further assessment for three-dimensional solid models is required.

  6. Application of a modular multi-Gaussian beam model to wave propagation in anisotropic materials

    International Nuclear Information System (INIS)

    A modular multi-Gaussian beam model is used to study the effect of material anisotropy on ultrasonic beam propagation. It is shown that the characteristics of the beam as it propagates are, controlled by two properties of the slowness surface. The slopes of the slowness surface affect the beam direction (beam skewing) and the curvatures of the slowness surface affect the overall beam profile. It is shown that the slowness curvature pulls or pushes the overall beam profile without changing the amplitude and this behavior is different from the effect of interface curvature, An austenite stainless steel is considered. The least squares method are used to extract the local properties of the slowness parameters. Some simulation results are given to illustrate the effects these parameters on ultrasonic beam propagation.

  7. Application of the Marsupial Paradigm to Tropical Cyclone Formation from Northwestward-Propagating Disturbances

    Science.gov (United States)

    Wang, Zhuo; Dunkerton, Timothy J.; Montgomery, Michael T.

    2012-01-01

    A wave-tracking algorithm is developed for northwestward-propagating waves that, on occasion, play a role in tropical cyclogenesis over the western oceans. To obtain the Lagrangian flow structure, the frame of reference is translated obliquely at the same propagation speed with the precursor disturbance. Trajectory analysis suggests that streamlines in the obliquely translated frame of reference can be used to approximate flow trajectories. The algorithm was applied to Super Typhoon Nakri (2008), Tropical Cyclone Erika (2009), and a few other examples. Diagnoses of meteorological analyses and satellite-derived moisture and precipitation fields show that the marsupial framework for tropical cyclogenesis in tropical easterly waves is relevant also for northwestward-propagating disturbances as are commonly observed in the tropical western Atlantic, the Gulf of Mexico, and the western North Pacific. Finally, it is suggested that analysis of the global model data and satellite observations in the marsupial framework can provide useful guidance on early tropical cyclone advisories.

  8. Tuning the Fano resonance between localized and propagating surface plasmon resonances for refractive index sensing applications

    CERN Document Server

    Lodewijks, Kristof; Van Roy, Willem; Borghs, Gustaaf; Lagae, Liesbet; Van Dorpe, Pol

    2012-01-01

    Localized and propagating surface plasmon resonances are known to show very pronounced interactions if they are simultaneously excited in the same nanostructure. Here we study the fano interference that occurs between localized (LSPR) and propagating (SPP) modes by means of phase sensitive spectroscopic ellipsometry. The sample structures consist of periodic gratings of gold nanodisks on top of a continuous gold layer and a thin dielectric spacer, in which the structural dimensions were tuned in such a way that the dipolar LSPR mode and the propagating SPP modes are excited in the same spectral region. We observe pronounced anti-crossing and strongly asymmetric line shapes when both modes move to each others vicinity, accompagnied of largely increased phase differences between the respective plasmon resonances. Moreover we show that the anti-crossing can be exploited to increase the refractive index sensitivity of the localized modes dramatically, which result in largely increased values for the Figure-Of-Mer...

  9. Analysis of Wave Propagation in Stratified Structures Using Circuit Analogues, with Application to Electromagnetic Absorbers

    Science.gov (United States)

    Sjoberg, Daniel

    2008-01-01

    This paper presents an overview of how circuit models can be used for analysing wave propagation in stratified structures. Relatively complex structures can be analysed using models which are accessible to undergraduate students. Homogeneous slabs are modelled as transmission lines, and thin sheets between the slabs are modelled as lumped…

  10. Comprehensive Design and Propagation Study of a Compact Dual Band Antenna for Healthcare Applications

    Directory of Open Access Journals (Sweden)

    Mohammad Monirujjaman Khan

    2015-04-01

    Full Text Available In this paper, a dual band planar inverted F antenna (PIFA has been investigated for cooperative on- and off-body communications. Free space and on-body performance parameters like return loss, bandwidth, radiation pattern and efficiency of this antenna are shown and investigated. The on- and off-body radio propagation channel performance at 2.45 GHz and 1.9 GHz have been investigated, respectively. Experimental investigations are performed both in the anechoic chamber and in an indoor environment. The path loss exponent has been extracted for both on- and off-body radio propagation scenarios. For on-body propagation, the path loss exponent is 2.48 and 2.22 in the anechoic chamber and indoor environment, respectively. The path loss exponent is 1.27 for off-body radio propagation situation. For on-body case, the path loss has been characterized for ten different locations on the body at 2.45 GHz, whereas for off-body case radio channel studies are performed for five different locations at 1.9 GHz. The proposed antenna shows a good on- and off-body radio channel performance.

  11. The mixed Wentzel–Kramers–Brillouin-full-wave approach and its application to lower hybrid wave propagation and absorption

    International Nuclear Information System (INIS)

    The mixed Wentzel–Kramers–Brillouin (WKB)-full-wave approach for the calculation of the 2D mode structure in tokamak plasmas is further developed based on our previous work [A. Cardinali and F. Zonca, Phys. Plasmas 10, 4199 (2003) and Z. X. Lu et al., Phys. Plasmas 19, 042104 (2012)]. A new scheme for theoretical analysis and numerical implementation of the mixed WKB-full-wave approach is formulated, based on scale separation and asymptotic analysis. Besides its capability to efficiently investigate the initial value problem for 2D mode structures and linear stability, in this work, the mixed WKB-full-wave approach is extended to the investigation of radio frequency wave propagation and absorption, e.g., lower hybrid waves. As a novel method, its comparison with other approaches, e.g., WKB and beam tracing methods, is discussed. Its application to lower hybrid wave propagation in concentric circular tokamak plasmas using typical FTU discharge parameters is also demonstrated.

  12. Dual Affine invariant points

    OpenAIRE

    Meyer, Mathieu; Schuett, Carsten; Werner, Elisabeth M.

    2013-01-01

    An affine invariant point on the class of convex bodies in R^n, endowed with the Hausdorff metric, is a continuous map p which is invariant under one-to-one affine transformations A on R^n, that is, p(A(K))=A(p(K)). We define here the new notion of dual affine point q of an affine invariant point p by the formula q(K^{p(K)})=p(K) for every convex body K, where K^{p(K)} denotes the polar of K with respect to p(K). We investigate which affine invariant points do have a dual point, whether this ...

  13. Brutal crack propagation in dynamic fracture: industrial application to the length of the crack arrest

    International Nuclear Information System (INIS)

    This research thesis aims at understanding and analysing some mechanisms involved in the dynamic failure under various loadings which are notably present in industrial environment, and more particularly in some parts of EDF's plants where networks of micro-cracks may steadily grow: heterogeneous zones, defects under coating. The author presents a simplified model based on the de-bonding of a film to understand the mechanisms of a sudden failure under a quasi-static loading. He develops a similar model to explore the influence of a defect on crack propagation under a quasi-static loading, and then under a sudden loading. This model is then generalized to the case of several defects, and more particularly very small defects. Finally, the author gives a numerical interpretation of a sudden propagation under quasi-static loading

  14. A Novel Vertex Affinity for Community Detection

    Energy Technology Data Exchange (ETDEWEB)

    Yoo, Andy [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Sanders, Geoffrey [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Henson, Van [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Vassilevski, Panayot [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2015-10-05

    We propose a novel vertex affinity measure in this paper. The new vertex affinity quantifies the proximity between two vertices in terms of their clustering strength and is ideal for such graph analytics applications as community detection. We also developed a framework that combines simple graph searches and resistance circuit formulas to compute the vertex affinity efficiently. We study the properties of the new affinity measure empirically in comparison to those of other popular vertex proximity metrics. Our results show that the existing metrics are ill-suited for community detection due to their lack of fundamental properties that are essential for correctly capturing inter- and intra-cluster vertex proximity.

  15. Compact noncontraction semigroups of affine operators

    Science.gov (United States)

    Voynov, A. S.; Protasov, V. Yu

    2015-07-01

    We analyze compact multiplicative semigroups of affine operators acting in a finite-dimensional space. The main result states that every such semigroup is either contracting, that is, contains elements of arbitrarily small operator norm, or all its operators share a common invariant affine subspace on which this semigroup is contracting. The proof uses functional difference equations with contraction of the argument. We look at applications to self-affine partitions of convex sets, the investigation of finite affine semigroups and the proof of a criterion of primitivity for nonnegative matrix families. Bibliography: 32 titles.

  16. PROPAGATION CHARACTERISTICS OF HIGH ORDER LONGITUDINAL MODES IN STEEL STRANDS AND THEIR APPLICATIONS

    Institute of Scientific and Technical Information of China (English)

    Zenghua Liu; Su Liu; Bin Wu; Yinong Zhang; Cunfu He

    2008-01-01

    Propagation characteristics of high order longitudinal modes of ultrasonic guided waves in seven-wire steel strands are investigated theoretically and experimentally. According to these analysis results, proper longitudinal modes are selected for defect detection in steel strands.Dispersion curves for helical and central wires in a 17.80 mm nominal diameter seven-wire steel strand are numerically obtained firstly, and propagation characteristics of high-order longitudinal modes, such as wave structures, attenuation and dispersion, are analyzed. In experiments, the signals of ultrasonic guided wave at different high frequencies are excited and received at one end of a steel strand by using the same single piezoelectric transducer. The identification of longitudinal modes in the received signals is achieved based on short time Fourier transform. Furthermore,appropriate L(0, 5) mode at 2.54 MHz is chosen for detecting an artificial defect in a helical wire of the steel strand. Results show that high order longitudinal modes in a high frequency range with low dispersion and attenuation whose energy propagates mainly in the center of the wires can be used for defect detection in long range steel strands.

  17. Application of adaptive kinetic modelling for bias propagation reduction in direct 4D image reconstruction

    International Nuclear Information System (INIS)

    Parametric imaging in thoracic and abdominal PET can provide additional parameters more relevant to the pathophysiology of the system under study. However, dynamic data in the body are noisy due to the limiting counting statistics leading to suboptimal kinetic parameter estimates. Direct 4D image reconstruction algorithms can potentially improve kinetic parameter precision and accuracy in dynamic PET body imaging. However, construction of a common kinetic model is not always feasible and in contrast to post-reconstruction kinetic analysis, errors in poorly modelled regions may spatially propagate to regions which are well modelled. To reduce error propagation from erroneous model fits, we implement and evaluate a new approach to direct parameter estimation by incorporating a recently proposed kinetic modelling strategy within a direct 4D image reconstruction framework. The algorithm uses a secondary more general model to allow a less constrained model fit in regions where the kinetic model does not accurately describe the underlying kinetics. A portion of the residuals then is adaptively included back into the image whilst preserving the primary model characteristics in other well modelled regions using a penalty term that trades off the models. Using fully 4D simulations based on dynamic [15O]H2O datasets, we demonstrate reduction in propagation-related bias for all kinetic parameters. Under noisy conditions, reductions in bias due to propagation are obtained at the cost of increased noise, which in turn results in increased bias and variance of the kinetic parameters. This trade-off reflects the challenge of separating the residuals arising from poor kinetic modelling fits from the residuals arising purely from noise. Nonetheless, the overall root mean square error is reduced in most regions and parameters. Using the adaptive 4D image reconstruction improved model fits can be obtained in poorly modelled regions, leading to reduced errors potentially propagating

  18. Self-propagating high temperature synthesis for compound thermoelectrics and new criterion for applicability of combustion processing

    Science.gov (United States)

    Tang, Xinfeng; Su, Xianli; Uher, Ctirad; Tang's Group Team; Uher's Group Team

    2015-03-01

    Here we report compound thermoelectric materials (Bi2Te3, Bi2Se3, Cu2Se,Cu2SnSe3, half-Heusler alloys, lead chalcogenides, skutterudites, and magnesium silicides) with thermoelectric properties comparable with materials prepared by the traditional routes of synthesis can be synthesized at a minimal cost and on the time scale of seconds using the self-propagating high temperature synthesis method. Moreover, we found that the criterion often quoted in the literature as the necessary precondition for combustion synthesis, Tad >= 1800 K, is not universal and certainly not applicable to thermoelectric compound semiconductors. Instead, we offer new empirically-based criterion, Tad /Tm , L >1, i.e., the adiabatic temperature must be high enough to melt the lower melting point component, which covers all materials synthesized by self-propagating high temperature synthesis, including the high temperature refractory compounds for which the Tad >= 1800 K criterion was originally developed. Our work opens a new avenue for ultra-fast, low cost, mass production fabrication of efficient thermoelectric materials and the new criterion greatly broadens the scope of materials that can be successfully synthesized by self-propagating high temperature synthesis. We wish to acknowledge support from the National Basic Research Program of China (973 program) under Project 2013CB632502.

  19. A fast Fourier transform implementation of the Kramers-Kronig relations: Application to anomalous and left handed propagation

    Directory of Open Access Journals (Sweden)

    Jérôme Lucas

    2012-09-01

    Full Text Available In this this paper we quickly derive the Kramers-Kronig relations from simple causality considerations and propose a simple way to implement them using the Fast Fourier Transform. This work focuses on how to make these relations a usable tool even when their conditions of validity are not strictly respected. In this respect we emphasize on their application to the constant low level loss approximation at microwave frequencies. The method presented is demonstrated on various typical cases of fancy propagation: high velocity, negative phase velocity and evanescent waves.

  20. Application of back-propagation neural networks to identification of seismic arrival types

    OpenAIRE

    Dai, Heng; MacBeth, Colin

    1997-01-01

    A back-propagation neural network (BPNN) approach is developed to identify P- and S-arrivals from three-component recordings of local earthquake data. The BPNN is trained by selecting trace segments of P- and S-waves and noise bursts converted into an attribute space based on the degree of polarization (DOP). After training, the network can automatically identify the type of arrival on earthquake recordings. Compared with manual analysis, a BPNN trained with nine groups of DOP segments can co...

  1. Application of finite difference techniques to noise propagation in jet engine ducts

    Science.gov (United States)

    Baumeister, K. J.

    1973-01-01

    A finite difference formulation is presented for wave propagation in a rectangular two-dimensional duct without steady flow. The difference technique, which should be useful in the study of acoustically treated inlet and exhausts ducts used in turbofan engines, can readily handle acoustical flow field complications such as axial variations in wall impedance and cross section area. In the numerical analysis, the continuous acoustic field is lumped into a series of grid points in which the pressure and velocity at each grid point are separated into real and imaginary terms. An example calculation is also presented for the sound attenuation in a two-dimensional straight soft-walled suppressor.

  2. Application of finite difference techniques to noise propagation in jet engine ducts

    Science.gov (United States)

    Baumeister, K. J.

    1973-01-01

    A finite difference formulation is presented for wave propagation in a rectangular two-dimensional duct without steady flow. The difference technique, which should be used in the study of acoustically treated inlet and exhausts ducts used in turbofan engines, can readily handle acoustical flow field complications such as axial variations in wall impedance and cross-section area. In the numerical analysis, the continuous acoustic field is lumped into a series of grid points in which the pressure and velocity at each grid point are separated into real and imaginary terms. An example calculation is also presented for the sound attenuation in a two-dimensional straight soft-walled suppressor.

  3. Analogies between optical propagation and heat diffusion: Applications to micro-cavities, gratings and cloaks

    CERN Document Server

    Amra, Claude; Zerrad, Myriam; Guenneau, Sébastien; Soriano, Gabriel; Gralak, Boris; Bellieud, Michel; Veynante, Denis; Rolland, Nathalie

    2015-01-01

    A new analogy between optical propagation and heat diffusion in heterogeneous anisotropic media has been proposed recently [S. Guenneau, C. Amra, and D. Veynante, Optics Express Vol. 20, 8207-8218 (2012)]. A detailed derivation of this unconventional correspondence is presented and developed. In time harmonic regime, all thermal parameters are related to optical ones in artificial metallic media, thus making possible to use numerical codes developed for optics. Then the optical admittance formalism is extended to heat conduction in multilayered structures. The concepts of planar micro-cavities, diffraction gratings, and planar transformation optics for heat conduction are addressed. Results and limitations of the analogy are emphasized.

  4. Affine Grassmann codes

    DEFF Research Database (Denmark)

    Høholdt, Tom; Beelen, Peter; Ghorpade, Sudhir Ramakant

    2010-01-01

    We consider a new class of linear codes, called affine Grassmann codes. These can be viewed as a variant of generalized Reed-Muller codes and are closely related to Grassmann codes.We determine the length, dimension, and the minimum distance of any affine Grassmann code. Moreover, we show that...... affine Grassmann codes have a large automorphism group and determine the number of minimum weight codewords....

  5. The effect of barriers on wave propagation phenomena: With application for aircraft noise shielding

    Science.gov (United States)

    Mgana, C. V. M.; Chang, I. D.

    1982-01-01

    The frequency spectrum was divided into high and low frequency regimes and two separate methods were developed and applied to account for physical factors associated with flight conditions. For long wave propagation, the acoustic filed due to a point source near a solid obstacle was treated in terms of an inner region which where the fluid motion is essentially incompressible, and an outer region which is a linear acoustic field generated by hydrodynamic disturbances in the inner region. This method was applied to a case of a finite slotted plate modelled to represent a wing extended flap for both stationary and moving media. Ray acoustics, the Kirchhoff integral formulation, and the stationary phase approximation were combined to study short wave length propagation in many limiting cases as well as in the case of a semi-infinite plate in a uniform flow velocity with a point source above the plate and embedded in a different flow velocity to simulate an engine exhaust jet stream surrounding the source.

  6. Application of ray theory to propagation of low frequency noise from wind turbines

    Science.gov (United States)

    Hawkins, James A.

    1987-01-01

    Ray theory is used to explain data from two experiments (1985 and 1985) on the propagation of low frequency sound generated by the WTS-4 wind turbine. Emphasis is on downwind data, but some upwind measurements taken during the 1985 experiment are also considered. General ray theory for a moving medium is reviewed and ray equations obtained. Restrictions are introduced simplifying the equations and permitting the use of a ray theory program MEDUSA, the computed propagation loss curve of which is compared to the measurements. Good qualitative agreement is obtained with 1984 downwind data. The results indicate that the downwind sound field is that of a near-ground sound channel. Although more scatter is seen in the 1985 data, agreement between theory and data is also good. In particular, the position and magnitude of the jump in the sound levels associated with the beginning of the sound channel is correctly predicted. The theoretical explanation of the upwind data is less successful. Ray theory calculations indicate the formation of a shadow zone that, in fact, does not occur. While no sharp shadow zone is apparent in the data, the general expectation (based on ray theory) that sound levels should be much reduced upwind is confirmed by the data.

  7. Beam propagation

    International Nuclear Information System (INIS)

    The main part of this thesis consists of 15 published papers, in which the numerical Beam Propagating Method (BPM) is investigated, verified and used in a number of applications. In the introduction a derivation of the nonlinear Schroedinger equation is presented to connect the beginning of the soliton papers with Maxwell's equations including a nonlinear polarization. This thesis focuses on the wide use of the BPM for numerical simulations of propagating light and particle beams through different types of structures such as waveguides, fibers, tapers, Y-junctions, laser arrays and crystalline solids. We verify the BPM in the above listed problems against other numerical methods for example the Finite-element Method, perturbation methods and Runge-Kutta integration. Further, the BPM is shown to be a simple and effective way to numerically set up the Green's function in matrix form for periodic structures. The Green's function matrix can then be diagonalized with matrix methods yielding the eigensolutions of the structure. The BPM inherent transverse periodicity can be untied, if desired, by for example including an absorptive refractive index at the computational window edges. The interaction of two first-order soliton pulses is strongly dependent on the phase relationship between the individual solitons. When optical phase shift keying is used in coherent one-carrier wavelength communication, the fiber attenuation will suppress or delay the nonlinear instability. (orig.)

  8. Long Range Sound Propagation over Sea: Application to Wind Turbine Noise

    Energy Technology Data Exchange (ETDEWEB)

    Boue, Matieu

    2007-12-13

    The classical theory of spherical wave propagation is not valid at large distances from a sound source due to the influence of wind and temperature gradients that refract, i.e., bend the sound waves. This will in the downwind direction lead to a cylindrical type of wave spreading for large distances (> 1 km). Cylindrical spreading will give a smaller damping with distance as compared to spherical spreading (3 dB/distance doubling instead of 6 dB). But over areas with soft ground, i.e., grass land, the effect of ground reflections will increase the damping so that, if the effect of atmospheric damping is removed, a behavior close to a free field spherical spreading often is observed. This is the standard assumption used in most national recommendations for predicting outdoor sound propagation, e.g., noise from wind turbines. Over areas with hard surfaces, e.g., desserts or the sea, the effect of ground damping is small and therefore cylindrical propagation could be expected in the downwind direction. This observation backed by a limited number of measurements is the background for the Swedish recommendation, which suggests that cylindrical wave spreading should be assumed for distances larger than 200 m for sea based wind turbines. The purpose of this work was to develop measurement procedures for long range sound transmission and to apply this to investigate the occurrence of cylindrical wave spreading in the Baltic Sea. This work has been successfully finished and is described in this report. Another ambition was to develop models for long range sound transmission based on the parabolic equation. Here the work is not finished but must be continued in another project. Long term measurements were performed in the Kalmar strait, Sweden, located between the mainland and Oeland, during 2005 and 2006. Two different directive sound sources placed on a lighthouse in the middle of the strait produced low frequency tones at 80, 200 and 400 Hz. At the reception point on

  9. Propagation characteristics of converted refracted wave and its application in static correction of converted wave

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Three-component seismic exploration through P-wave source and three-component geophone is an effective technique used in complicated reservoir exploration. In three-component seismic exploration data processing,one of the difficulties is static correction of converted wave. This paper analyzes propagation characteristics of non-converted and converted refracted waves,and discovers a favor-able condition for the formation of converted refracted wave,i.e. the velocity of overlaying medium S wave is much lower than that of underlying medium S wave. In addition,the paper proposes the static correction method of converted wave based on PPS converted refracted wave,and processes the real three-component seismic data with better results of static correction of converted wave.

  10. Expectation propagation for nonlinear inverse problems – with an application to electrical impedance tomography

    Energy Technology Data Exchange (ETDEWEB)

    Gehre, Matthias, E-mail: mgehre@math.uni-bremen.de [Center for Industrial Mathematics, University of Bremen, Bremen D-28344 (Germany); Jin, Bangti, E-mail: bangti.jin@gmail.com [Department of Mathematics, University of California, Riverside, University Ave. 900, Riverside, CA 92521 (United States)

    2014-02-15

    In this paper, we study a fast approximate inference method based on expectation propagation for exploring the posterior probability distribution arising from the Bayesian formulation of nonlinear inverse problems. It is capable of efficiently delivering reliable estimates of the posterior mean and covariance, thereby providing an inverse solution together with quantified uncertainties. Some theoretical properties of the iterative algorithm are discussed, and the efficient implementation for an important class of problems of projection type is described. The method is illustrated with one typical nonlinear inverse problem, electrical impedance tomography with complete electrode model, under sparsity constraints. Numerical results for real experimental data are presented, and compared with that by Markov chain Monte Carlo. The results indicate that the method is accurate and computationally very efficient.

  11. Application of perturbation theory methods to nuclear data uncertainty propagation using the collision probability method

    International Nuclear Information System (INIS)

    This thesis presents a comprehensive study of sensitivity/uncertainty analysis for reactor performance parameters (e.g. the k-effective) to the base nuclear data from which they are computed. The analysis starts at the fundamental step, the Evaluated Nuclear Data File and the uncertainties inherently associated with the data they contain, available in the form of variance/covariance matrices. We show that when a methodical and consistent computation of sensitivity is performed, conventional deterministic formalisms can be sufficient to propagate nuclear data uncertainties with the level of accuracy obtained by the most advanced tools, such as state-of-the-art Monte Carlo codes. By applying our developed methodology to three exercises proposed by the OECD (Uncertainty Analysis for Criticality Safety Assessment Benchmarks), we provide insights of the underlying physical phenomena associated with the used formalisms. (author)

  12. Analytical Uncertainty Propagation in Life Cycle Inventory and Impact Assessment: Application to an Automobile Front Panel

    DEFF Research Database (Denmark)

    Hong, Jinglan; Shaked, Shanna; Rosenbaum, Ralph K.;

    2010-01-01

    Background, aim, and scope Uncertainty information is essential for the proper use of Life Cycle Assessment (LCA) and environmental assessments in decision making. So far, parameter uncertainty propagation has mainly been studied using Monte Carlo techniques that are relatively computationally...... approach to the comparison of two or more LCA scenarios. Since in LCA it is crucial to account for both common inventory processes and common impact assessment characterization factors among the different scenarios, we further develop the approach to address this dependency. We provide a method to easily...... tested cases, we obtained a good concordance between the Monte Carlo and the Taylor series expansion methods regarding the probability that one scenario is better than the other. Discussion The Taylor series expansion method addresses the crucial need of accounting for dependencies in LCA, both for...

  13. Affine modifications and affine hypersurfaces with a very transitive automorphism group

    OpenAIRE

    Kaliman, Shulim; ZAIDENBERG, MIKHAIL

    1998-01-01

    We study a kind of modification of an affine domain which produces another affine domain. First appeared in passing in the basic paper of O. Zariski (1942), it was further considered by E.D. Davis (1967). The first named author applied its geometric counterpart to construct contractible smooth affine varieties non-isomorphic to Euclidean spaces. Here we provide certain conditions which guarantee preservation of the topology under a modification. As an application, we show that the group of bi...

  14. Expectation Propagation

    OpenAIRE

    Raymond, Jack; Manoel, Andre; Opper, Manfred

    2014-01-01

    Variational inference is a powerful concept that underlies many iterative approximation algorithms; expectation propagation, mean-field methods and belief propagations were all central themes at the school that can be perceived from this unifying framework. The lectures of Manfred Opper introduce the archetypal example of Expectation Propagation, before establishing the connection with the other approximation methods. Corrections by expansion about the expectation propagation are then explain...

  15. ZnO Films on {001}-Cut -Propagating GaAs Substrates for Surface Acoustic Wave Device Applications

    Science.gov (United States)

    Kim, Yoonkee; Hunt, William D.; Hickernell, Frederick S.; Higgins, Robert J.; Jen, Cheng-Kuei

    1995-01-01

    A potential application for piezoelectric films on GaAs substrates is the monolithic integration of surface acoustic wave (SAW) devices with GaAs electronics. Knowledge of the SAW properties of the layered structure is critical for the optimum and accurate design of such devices. The acoustic properties of ZnO films sputtered on {001}-cut -propagating GaAs substrates are investigated in this article, including SAW Velocity effective piezoelectric coupling constant, propagation loss. diffraction, velocity surface, and reflectivity of shorted and open metallic gratings. The measurements of these essential SAW properties for the frequency range between 180 and 360 MHz have been performed using a knife-edge laser probe for film thicknesses over the range of 1.6-4 micron and with films or different grain sizes. The high quality of dc triode sputtered films was observed as evidenced by high K(exp 2) and low attenuation. The measurements of the velocity surface, which directly affects the SAW diffraction, on the bare and metalized ZnO on SiO2, or Si3N4 on {001}-cut GaAs samples are reported using two different techniques: 1) knife-edge laser probe, 2) line-focus-beam scanning acoustic microscope. It was found that near the propagation direction, the focusing SAW property of the bare GaAs changes into a nonfocusing one for the layered structure, but a reversed phenomenon exists near the direction. Furthermore, to some extent the diffraction of the substrate can be controlled with the film thickness. The reflectivity of shorted and open gratings are also analyzed and measured. Zero reflectivity is observed for a shorted grating. There is good agreement between the measured data and theoretical values.

  16. ZnO films on /001/-cut (110)-propagating GaAs substrates for surface acoustic wave device applications

    Science.gov (United States)

    Hickernell, Frederick S.; Higgins, Robert J.; Jen, Cheng-Kuei; Kim, Yoonkee; Hunt, William D.

    1995-01-01

    A potential application for piezoelectric films substrates is the monolithic integration of surface acoustic wave (SAW) devices with GaAs electronics. Knowledge of the SAW properties of the layered structure is critical for the optimum and accurate design of such devices. The acoustic properties of ZnO films sputtered on /001/-cut group of (110) zone axes-propagating GaAs substrates are investigated in this article, including SAW velocity, effective piezoelectric coupling constant, propagation loss, diffraction, velocity surface, and reflectivity of shorted and open metallic gratings. The measurements of these essential SAW properties for the frequency range between 180 and 360 MHz have been performed using a knife-edge laser probe for film thicknesses over the range of 1.6-4 micron and with films of different grain sizes. The high quality of dc triode sputtered films was observed as evidenced by high K(sup 2) and low attenuation. The measurements of the velocity surface, which directly affects the SAW diffraction, on the bare and metalized ZnO on SiO2 or Si3N4 on /001/-cut GaAs samples are reported using two different techniques: (1) knife-edge laser probe, (2) line-focus-beam scanning acoustic microscope. It was found that near the group of (110) zone axes propagation direction, the focusing SAW property of the bare GaAs changes into a nonfocusing one for the layered structure, but a reversed phenomenon exists near the (100) direction. Furthermore, to some extent the diffraction of the substrate can be controlled with the film thickness. The reflectivity of shorted and open gratings are also analyzed and measured. Zero reflectivity is observed for a shorted grating. There is good agreement between the measured data and theoretical values.

  17. Application of the error propagation theory in estimates of static formation temperatures in geothermal and petroleum boreholes

    International Nuclear Information System (INIS)

    We used the error propagation theory to calculate uncertainties in static formation temperature estimates in geothermal and petroleum wells from three widely used methods (line-source or Horner method; spherical and radial heat flow method; and cylindrical heat source method). Although these methods commonly use an ordinary least-squares linear regression model considered in this study, we also evaluated two variants of a weighted least-squares linear regression model for the actual relationship between the bottom-hole temperature and the corresponding time functions. Equations based on the error propagation theory were derived for estimating uncertainties in the time function of each analytical method. These uncertainties in conjunction with those on bottom-hole temperatures were used to estimate individual weighting factors required for applying the two variants of the weighted least-squares regression model. Standard deviations and 95% confidence limits of intercept were calculated for both types of linear regressions. Applications showed that static formation temperatures computed with the spherical and radial heat flow method were generally greater (at the 95% confidence level) than those from the other two methods under study. When typical measurement errors of 0.25 h in time and 5 deg. C in bottom-hole temperature were assumed for the weighted least-squares model, the uncertainties in the estimated static formation temperatures were greater than those for the ordinary least-squares model. However, if these errors were smaller (about 1% in time and 0.5% in temperature measurements), the weighted least-squares linear regression model would generally provide smaller uncertainties for the estimated temperatures than the ordinary least-squares linear regression model. Therefore, the weighted model would be statistically correct and more appropriate for such applications. We also suggest that at least 30 precise and accurate BHT and time measurements along with

  18. Atmospheric pressure argon surface discharges propagated in long tubes: physical characterization and application to bio-decontamination

    Science.gov (United States)

    Kovalova, Zuzana; Leroy, Magali; Jacobs, Carolyn; Kirkpatrick, Michael J.; Machala, Zdenko; Lopes, Filipa; Laux, Christophe O.; DuBow, Michael S.; Odic, Emmanuel

    2015-11-01

    Pulsed corona discharges propagated in argon (or in argon with added water vapor) at atmospheric pressure on the interior surface of a 49 cm long quartz tube were investigated for the application of surface bio-decontamination. H2O molecule dissociation in the argon plasma generated reactive species (i.e. OH in ground and excited states) and UV emission, which both directly affected bacterial cells. In order to facilitate the evaluation of the contribution of UV radiation, a DNA damage repair defective bacterial strain, Escherichia coli DH-1, was used. Discharge characteristics, including propagation velocity and plasma temperature, were measured. Up to ~5.5 and ~5 log10 reductions were observed for E. coli DH-1 bacteria (from 106 initial load) exposed 2 cm and 44 cm away from the charged electrode, respectively, for a 20 min plasma treatment. The factors contributing to the observed bactericidal effect include desiccation, reactive oxygen species (OH) plus H2O2 accumulation in the liquid phase, and UV-B (and possibly VUV) emission in dry argon. The steady state temperature measured on the quartz tube wall did not exceeded 29 °C the contribution of heating, along with that of H2O2 accumulation, was estimated to be low. The effect of UV-B emission alone or in combination with the other stress factors of the plasma process was examined for different operating conditions.

  19. Propagation of very long water waves, with vorticity, over variable depth, with applications to tsunamis

    Energy Technology Data Exchange (ETDEWEB)

    Constantin, A [School of Mathematics, Trinity College Dublin, College Green, Dublin 2 (Ireland); Johnson, R S [School of Mathematics and Statistics, University of Newcastle upon Tyne, Newcastle upon Tyne, NE1 7RU (United Kingdom)], E-mail: r.s.johnson@newcastle.ac.uk

    2008-03-31

    We present a theory of very long waves propagating on the surface of water. The waves evolve slowly, both on the scale {epsilon} (weak nonlinearity), and on the scale, {sigma}, of the depth variation. In our model, dispersion does not affect the evolution of the wave even over the large distances that tsunamis may travel. We allow a distribution of vorticity, in addition to variable depth. Our solution is not valid for depth = O({epsilon}{sup 4/5}); the equations here are expressed in terms of the single parameter {epsilon}{sup 2/5}{sigma} and matched to the solution in deep water. For a slow depth variation of the background state (consistent with our model), we prove that a constant-vorticity solution exists, from deep water to shoreline, and that regions of isolated vorticity can also exist, for appropriate bottom profiles. We describe how the wave properties are modified by the presence of vorticity. Some graphical examples of our various solutions are presented.

  20. Application of back-propagation neural networks to identification of seismic arrival types

    Science.gov (United States)

    Dai, Hengchang; MacBeth, Colin

    1997-05-01

    A back-propagation neural network (BPNN) approach is developed to identify P- and S-arrivals from three-component recordings of local earthquake data. The BPNN is trained by selecting trace segments of P- and S-waves and noise bursts converted into an attribute space based on the degree of polarization (DOP). After training, the network can automatically identify the type of arrival on earthquake recordings. Compared with manual analysis, a BPNN trained with nine groups of DOP segments can correctly identify 82.3% of the P-arrivals and 62.6% of the S-arrivals from one seismic station, and when trained with five groups from a training dataset selected from another seismic station, it can correctly identify 76.6% of the P-arrivals and 60.5% of S-arrivals. This approach is adaptive and needs only the onset time of arrivals as input, although its performance cannot be improved by simply adding more training datasets due to the complexity of DOP patterns. Our experience suggests that other information or another network may be necessary to improve its performance.

  1. Symmetric discontinuous Galerkin methods for 1-D waves Fourier analysis, propagation, observability and applications

    CERN Document Server

    Marica, Aurora

    2014-01-01

    This work describes the propagation properties of the so-called symmetric interior penalty discontinuous Galerkin (SIPG) approximations of the 1-d wave equation. This is done by means of linear approximations on uniform meshes. First, a careful Fourier analysis is constructed, highlighting the coexistence of two Fourier spectral branches or spectral diagrams (physical and spurious) related to the two components of the numerical solution (averages and jumps). Efficient filtering mechanisms are also developed by means of techniques previously proved to be appropriate for classical schemes like finite differences or P1-classical finite elements. In particular, the work presents a proof that the uniform observability property is recovered uniformly by considering initial data with null jumps and averages given by a bi-grid filtering algorithm. Finally, the book explains how these results can be extended to other more sophisticated conforming and non-conforming finite element methods, in particular to quad...

  2. Application of self-propagating high-temperature synthesis processes in chemistry and technology of hydrides

    International Nuclear Information System (INIS)

    Described is the procedure of obtaining hydrides through self-propagating high-temperature synthesis of refractory compounds from elements in burning regime. The flow chart of producing hydrides by this process is presented. The starting components are intimately mixed, compressed and burnt in a constant-pressure cylinder, in a hydrogen atmosphere, at a pressure of 3 to 100 atm. The reaction rates are determined by photorecording of the heat. In the Ti-B-H2 system, the reagent ratio B/Ti varies from 0.1 to 2. The combustion yields titanium hydrides for a charge with the B/Ti ratio of 0.1 to 0.5, and titanium borides containing from 1 to 0.2w.% of H2 for compositions with the B/Ti ratio of 0.6 to 2. The major factors governing the formation of the yield products have been revealed. When Ti and Zr burn in hydrogen, a change in pressure from 1 to 100 atm does not affect the hydrogen content in the hydride. When rare earth elements burn, an increase in pressure in the case of light lanthanides leads to a higher hydrogen content in the product. In the case of heavy lanthanides, a hexagonal trihydride phase appears along with the cubic dihydride phase. The percentage of hydrogen in the yield product is independent of the mass of the metal hydrogenated in the reactor

  3. Affine and Projective Geometry

    CERN Document Server

    Bennett, M K

    1995-01-01

    An important new perspective on AFFINE AND PROJECTIVE GEOMETRY. This innovative book treats math majors and math education students to a fresh look at affine and projective geometry from algebraic, synthetic, and lattice theoretic points of view. Affine and Projective Geometry comes complete with ninety illustrations, and numerous examples and exercises, covering material for two semesters of upper-level undergraduate mathematics. The first part of the book deals with the correlation between synthetic geometry and linear algebra. In the second part, geometry is used to introduce lattice theory

  4. Propagation equation of Hermite-Gauss beams through a complex optical system with apertures and its application to focal shift.

    Science.gov (United States)

    Peng, Sun; Jin, Guo; Tingfeng, Wang

    2013-07-01

    Based on the generalized Huygens-Fresnel diffraction integral (Collins' formula), the propagation equation of Hermite-Gauss beams through a complex optical system with a limiting aperture is derived. The elements of the optical system may be all those characterized by an ABCD ray-transfer matrix, as well as any kind of apertures represented by complex transmittance functions. To obtain the analytical expression, we expand the aperture transmittance function into a finite sum of complex Gaussian functions. Thus the limiting aperture is expressed as a superposition of a series of Gaussian-shaped limiting apertures. The advantage of this treatment is that we can treat almost all kinds of apertures in theory. As application, we define the width of the beam and the focal plane using an encircled-energy criterion and calculate the intensity distribution of Hermite-Gauss beams at the actual focus of an aperture lens. PMID:24323153

  5. Uncertainty Propagation and Quantification using Constrained Coupled Adaptive Forward-Inverse Schemes: Theory and Applications

    Science.gov (United States)

    Ryerson, F. J.; Ezzedine, S. M.; Antoun, T.

    2013-12-01

    The success of implementation and execution of numerous subsurface energy technologies such shale gas extraction, geothermal energy, underground coal gasification rely on detailed characterization of the geology and the subsurface properties. For example, spatial variability of subsurface permeability controls multi-phase flow, and hence impacts the prediction of reservoir performance. Subsurface properties can vary significantly over several length scales making detailed subsurface characterization unfeasible if not forbidden. Therefore, in common practices, only sparse measurements of data are available to image or characterize the entire reservoir. For example pressure, P, permeability, k, and production rate, Q, measurements are only available at the monitoring and operational wells. Elsewhere, the spatial distribution of k is determined by various deterministic or stochastic interpolation techniques and P and Q are calculated from the governing forward mass balance equation assuming k is given at all locations. Several uncertainty drivers, such as PSUADE, are then used to propagate and quantify the uncertainty (UQ) of quantities (variable) of interest using forward solvers. Unfortunately, forward-solver techniques and other interpolation schemes are rarely constrained by the inverse problem itself: given P and Q at observation points determine the spatially variable map of k. The approach presented here, motivated by fluid imaging for subsurface characterization and monitoring, was developed by progressively solving increasingly complex realistic problems. The essence of this novel approach is that the forward and inverse partial differential equations are the interpolator themselves for P, k and Q rather than extraneous and sometimes ad hoc schemes. Three cases with different sparsity of data are investigated. In the simplest case, a sufficient number of passive pressure data (pre-production pressure gradients) are given. Here, only the inverse hyperbolic

  6. Affine dynamics with torsion

    Energy Technology Data Exchange (ETDEWEB)

    Gueltekin, Kemal [Izmir Institute of Technology, Department of Physics, Izmir (Turkey)

    2016-03-15

    In this study, we give a thorough analysis of a general affine gravity with torsion. After a brief exposition of the affine gravities considered by Eddington and Schroedinger, we construct and analyze different affine gravities based on the determinants of the Ricci tensor, the torsion tensor, the Riemann tensor, and their combinations. In each case we reduce equations of motion to their simplest forms and give a detailed analysis of their solutions. Our analyses lead to the construction of the affine connection in terms of the curvature and torsion tensors. Our solutions of the dynamical equations show that the curvature tensors at different points are correlated via non-local, exponential rescaling factors determined by the torsion tensor. (orig.)

  7. Affinity Proteomics in the mountains: Alpbach 2015.

    Science.gov (United States)

    Taussig, Michael J

    2016-09-25

    The 2015 Alpbach Workshop on Affinity Proteomics, organised by the EU AFFINOMICS consortium, was the 7th workshop in this series. As in previous years, the focus of the event was the current state of affinity methods for proteome analysis, including complementarity with mass spectrometry, progress in recombinant binder production methods, alternatives to classical antibodies as affinity reagents, analysis of proteome targets, industry focus on biomarkers, and diagnostic and clinical applications. The combination of excellent science with Austrian mountain scenery and winter sports engender an atmosphere that makes this series of workshops exceptional. The articles in this Special Issue represent a cross-section of the presentations at the 2015 meeting. PMID:27118167

  8. Affine and degenerate affine BMW algebras: Actions on tensor space

    CERN Document Server

    Daugherty, Zajj; Virk, Rahbar

    2012-01-01

    The affine and degenerate affine Birman-Murakami-Wenzl (BMW) algebras arise naturally in the context of Schur-Weyl duality for orthogonal and symplectic quantum groups and Lie algebras, respectively. Cyclotomic BMW algebras, affine and cyclotomic Hecke algebras, and their degenerate versions are quotients. In this paper we explain how the affine and degenerate affine BMW algebras are tantalizers (tensor power centralizer algebras) by defining actions of the affine braid group and the degenerate affine braid algebra on tensor space and showing that, in important cases, these actions induce actions of the affine and degenerate affine BMW algebras. We then exploit the connection to quantum groups and Lie algebras to determine universal parameters for the affine and degenerate affine BMW algebras. Finally, we show that the universal parameters are central elements--the higher Casimir elements for orthogonal and symplectic enveloping algebras and quantum groups.

  9. Belief propagation with multipoint correlations and its application to inverse problem

    International Nuclear Information System (INIS)

    We give explicit formulas of the Bethe approximation with multipoint correlations for systems with magnetic field. The obtained formulas include the closed form of the magnetization and the correlations between adjacent degrees of freedom. On the basis of our results, we propose a new iterative algorithm of the improved Bethe approximation. We confirm that the proposed technique is available for the random spin systems and indeed gives more accurate locations of the critical points. We discuss the possibility of the application of our method to the inverse Ising model by use of these equations

  10. Implementing turbulence transport in the CRONOS framework and application to the propagation of CMEs

    CERN Document Server

    Wiengarten, Tobias; Kleimann, Jens; Kissmann, Ralf

    2015-01-01

    We present the implementation of turbulence transport equations in addition to the Reynolds-averaged MHD equations within the Cronos framework. The model is validated by comparisons with earlier findings before it is extended to be applicable to regions in the solar wind that are not highly super-Alfv\\'enic. We find that the respective additional terms result in absolute normalized cross-helicity to decline more slowly, while a proper implementation of the mixing terms can even lead to increased cross-helicities in the inner heliosphere. The model extension allows to place the inner boundary of the simulations closer to the Sun, where we choose its location at 0.1 AU for future application to the Wang-Sheeley-Arge model. Here, we concentrate on effects on the turbulence evolution for transient events by injecting a coronal mass ejection (CME). We find that the steep gradients and shocks associated with these structures result in enhanced turbulence levels and reduced cross-helicity. Our results can now be use...

  11. Good Modeling Practice for PAT Applications: Propagation of Input Uncertainty and Sensitivity Analysis

    DEFF Research Database (Denmark)

    Sin, Gürkan; Gernaey, Krist; Eliasson Lantz, Anna

    2009-01-01

    compared to the large uncertainty observed in the antibiotic and off-gas CO2 predictions. The output uncertainty was observed to be lower during the exponential growth phase, while higher in the stationary and death phases - meaning the model describes some periods better than others. To understand which...... input parameters are responsible for the output uncertainty, three sensitivity methods (Standardized Regression Coefficients, Morris and differential analysis) were evaluated and compared. The results from these methods were mostly in agreement with each other and revealed that only few parameters......The uncertainty and sensitivity analysis are evaluated for their usefulness as part of the model-building within Process Analytical Technology applications. A mechanistic model describing a batch cultivation of Streptomyces coelicolor for antibiotic production was used as case study. The input...

  12. 3D Objects Localization Using Fuzzy Approach and Hierarchical Belief Propagation: Application at Level Crossings

    Directory of Open Access Journals (Sweden)

    Dufaux A

    2011-01-01

    Full Text Available Technological solutions for obstacle-detection systems have been proposed to prevent accidents in safety-transport applications. In order to avoid the limits of these proposed technologies, an obstacle-detection system utilizing stereo cameras is proposed to detect and localize multiple objects at level crossings. Background subtraction is first performed using the color independent component analysis technique, which has proved its performance against other well-known object-detection methods. The main contribution is the development of a robust stereo-matching algorithm which reliably localizes in 3D each segmented object. A standard stereo dataset and real-world images are used to test and evaluate the performances of the proposed algorithm to prove the efficiency and the robustness of the proposed video-surveillance system.

  13. Application of the multi-scale finite element method to wave propagation problems in damaged structures

    Science.gov (United States)

    Casadei, F.; Ruzzene, M.

    2011-04-01

    This work illustrates the possibility to extend the field of application of the Multi-Scale Finite Element Method (MsFEM) to structural mechanics problems that involve localized geometrical discontinuities like cracks or notches. The main idea is to construct finite elements with an arbitrary number of edge nodes that describe the actual geometry of the damage with shape functions that are defined as local solutions of the differential operator of the specific problem according to the MsFEM approach. The small scale information are then brought to the large scale model through the coupling of the global system matrices that are assembled using classical finite element procedures. The efficiency of the method is demonstrated through selected numerical examples that constitute classical problems of great interest to the structural health monitoring community.

  14. The mechanics and physics of fracturing: application to thermal aspects of crack propagation and to fracking.

    Science.gov (United States)

    Cherepanov, Genady P

    2015-03-28

    By way of introduction, the general invariant integral (GI) based on the energy conservation law is presented, with mention of cosmic, gravitational, mass, elastic, thermal and electromagnetic energy of matter application to demonstrate the approach, including Coulomb's Law generalized for moving electric charges, Newton's Law generalized for coupled gravitational/cosmic field, the new Archimedes' Law accounting for gravitational and surface energy, and others. Then using this approach the temperature track behind a moving crack is found, and the coupling of elastic and thermal energies is set up in fracturing. For porous materials saturated with a fluid or gas, the notion of binary continuum is used to introduce the corresponding GIs. As applied to the horizontal drilling and fracturing of boreholes, the field of pressure and flow rate as well as the fluid output from both a horizontal borehole and a fracture are derived in the fluid extraction regime. The theory of fracking in shale gas reservoirs is suggested for three basic regimes of the drill mud permeation, with calculating the shape and volume of the local region of the multiply fractured rock in terms of the pressures of rock, drill mud and shale gas. PMID:25713454

  15. On Applications of Pyramid Doubly Joint Bilateral Filtering in Dense Disparity Propagation

    Science.gov (United States)

    Abadpour, Arash

    2014-06-01

    Stereopsis is the basis for numerous tasks in machine vision, robotics, and 3D data acquisition and processing. In order for the subsequent algorithms to function properly, it is important that an affordable method exists that, given a pair of images taken by two cameras, can produce a representation of disparity or depth. This topic has been an active research field since the early days of work on image processing problems and rich literature is available on the topic. Joint bilateral filters have been recently proposed as a more affordable alternative to anisotropic diffusion. This class of image operators utilizes correlation in multiple modalities for purposes such as interpolation and upscaling. In this work, we develop the application of bilateral filtering for converting a large set of sparse disparity measurements into a dense disparity map. This paper develops novel methods for utilizing bilateral filters in joint, pyramid, and doubly joint settings, for purposes including missing value estimation and upscaling. We utilize images of natural and man-made scenes in order to exhibit the possibilities offered through the use of pyramid doubly joint bilateral filtering for stereopsis.

  16. Investigation of Propagation Characteristics of Twisted Hollow Waveguides for Particle Accelerator Applications

    Energy Technology Data Exchange (ETDEWEB)

    Wilson, Joshua Lee [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Univ. of Tennessee, Knoxville, TN (United States)

    2008-09-01

    A new class of accelerating structures employing a uniformly twisted waveguide is investigated. Twisted waveguides of various cross-sectional geometries are considered and analyzed. It is shown that such a twisted waveguide can support waves that travel at a speed slower than the speed of light c. The slow-wave properties of twisted structures are of interest because these slow-wave electromagnetic fields can be used in applications such as electron traveling wave tubes and linear particle accelerators. Since there is no exact closed form solution for the electromagnetic fields within a twisted waveguide or cavity, several previously proposed approximate methods are examined, and more effcient approaches are developed. It is found that the existing perturbation theory methods yield adequate results for slowly twisted structures; however, our efforts here are geared toward analyzing rapidly twisted structures using modifed finite difference methods specially suited for twisted structures. Although the method can handle general twisted structures, three particular cross sections are selected as representative cases for careful analysis. First, a slowly twisted rectangular cavity is analyzed as a reference case. This is because its shape is simple and perturbation theory already gives a good approximate solution for such slow twists rates. Secondly, a symmetrically notched circular cross section is investigated, since its longitudinal cross section is comparable to the well known disk-loaded cavity (used in many practical accelerator designs, including SLAC). Finally, a "dumbbell" shaped cross section is analyzed because of its similarity to the well-known TESLA-type accelerating cavity, which is of great importance because of its wide acceptance as a superconducting cavity. To validate the results of the developed theory and our extensive simulations, the newly developed numerical models are compared to commercial codes. Also, several prototypes are developed

  17. Numerical analysis of wave generation and propagation in a focused surface acoustic wave device for potential microfluidics applications.

    Science.gov (United States)

    Sankaranarayanan, Subramanian K R S; Bhethanabotla, Venkat R

    2009-03-01

    We develop a 3-D finite element model of a focused surface acoustic wave (F-SAW) device based on LiNbO(3) to analyze the wave generation and propagation characteristics for devices operating at MHz frequencies with varying applied input voltages. We compare the F-SAW device to a conventional SAW device with similar substrate dimensions and transducer finger periodicity. SAW devices with concentrically shaped focused interdigital transducer fingers (F-IDTs) are found to excite waves with high intensity and high beam-width compression ratio, confined to a small localized area. F-SAW devices are more sensitive to amplitude variations at regions close to the focal point than conventional SAW devices having uniform IDT configuration. We compute F-SAW induced streaming forces and velocity fields by applying a successive approximation technique to the Navier-Stokes equation (Nyborg's theory). The maximum streaming force obtained at the focal point varies as the square of the applied input voltage. Computed streaming velocities at the focal point in F-SAW devices are at least an order of magnitude higher than those in conventional SAW devices. Simulated frequency response indicates higher insertion losses in F-SAW devices than in conventional devices, reflecting their greater utility as actuators than as sensors. Our simulation findings suggest that F-SAW devices can be utilized effectively for actuation in microfluidic applications involving diffusion limited transport processes. PMID:19411221

  18. Antibody affinity maturation

    DEFF Research Database (Denmark)

    Skjødt, Mette Louise

    Yeast surface display is an effective tool for antibody affinity maturation because yeast can be used as an all-in-one workhorse to assemble, display and screen diversified antibody libraries. By employing the natural ability of yeast Saccharomyces cerevisiae to efficiently recombine multiple DNA...

  19. Development and application of one-way elastic wave propagators in generally-anisotropic, heterogeneous, three-dimensional media

    Science.gov (United States)

    Angus, Douglas A.

    A finite-difference narrow-angle one-way wave equation is implemented and is applied to various wave propagation problems to verify the method as well as to study frequency-dependent three-component waveform effects. The narrow-angle wave equation is the most approximate, yet most computationally practical, of the one-way wave equations derived by Thomson (1999). Although the vector narrow-angle wave equation is limited to a certain propagation distance, it is still a viable and powerful modelling approach to wave propagation in three-dimensional elastic media. A FORTRAN finite-difference code is developed that is second-order accurate in the lateral and forward propagation direction and requires only three extrapolation planes to be stored during each propagation step. Numerical analysis of the finite-difference algorithm indicates that the scheme is stable for appropriate initial conditions and, for the propagation path-lengths of interest, angular range of forward propagation and source-pulse spectral content, numerical grid-anisotropy is minimal. The narrow-angle propagator is sufficiently accurate for angles up to +/-15° to the preferred direction of propagation and is stable within singular regions of slowness space. For reasonable velocity gradients, the travel-times and amplitudes of transmitted and converted body-waves are in good agreement with an exact reference solution. The conical-point singularity is the main focus of the homogeneous, anisotropic wave propagation examples, because it represents the most extreme anisotropic singularity and poses the greatest difficulty for ray-based methods. The results of wave propagation along the acoustic axis display characteristic and potentially diagnostic waveform effects, such as wavefront folding and tearing, merging and splitting pulses, growth of anomalous components and bipolar waveforms. The results of wave propagation in isotropic heterogeneous media are consistent with various published results. Some

  20. Reduced basis approximation and a posteriori error estimation for affinely parametrized elliptic coercive partial differential equations: Application to transport and continuum mechanics

    OpenAIRE

    ROZZA, Gianluigi; Huynh, D.B. Phuong; Patera, Anthony T.

    2008-01-01

    In this paper we consider (hierarchical, Lagrange) reduced basis approximation and a posteriori error estimation for linear functional outputs of affinely parametrized elliptic coercive partial differential equations. The essential ingredients are (primal-dual) Galerkin projection onto a low- dimensional space associated with a smooth ``parametric manifold'' --- dimension reduction; efficient and effective greedy sampling methods for identification of optimal and numerically stabl...

  1. Aptamer Affinity Maturation by Resampling and Microarray Selection.

    Science.gov (United States)

    Kinghorn, Andrew B; Dirkzwager, Roderick M; Liang, Shaolin; Cheung, Yee-Wai; Fraser, Lewis A; Shiu, Simon Chi-Chin; Tang, Marco S L; Tanner, Julian A

    2016-07-19

    Aptamers have significant potential as affinity reagents, but better approaches are critically needed to discover higher affinity nucleic acids to widen the scope for their diagnostic, therapeutic, and proteomic application. Here, we report aptamer affinity maturation, a novel aptamer enhancement technique, which combines bioinformatic resampling of aptamer sequence data and microarray selection to navigate the combinatorial chemistry binding landscape. Aptamer affinity maturation is shown to improve aptamer affinity by an order of magnitude in a single round. The novel aptamers exhibited significant adaptation, the complexity of which precludes discovery by other microarray based methods. Honing aptamer sequences using aptamer affinity maturation could help optimize a next generation of nucleic acid affinity reagents. PMID:27346322

  2. Affine and degenerate affine BMW algebras: The center

    CERN Document Server

    Daugherty, Zajj; Virk, Rahbar

    2011-01-01

    The degenerate affine and affine BMW algebras arise naturally in the context of Schur-Weyl duality for orthogonal and symplectic Lie algebras and quantum groups, respectively. Cyclotomic BMW algebras, affine Hecke algebras, cyclotomic Hecke algebras, and their degenerate versions are quotients. In this paper the theory is unified by treating the orthogonal and symplectic cases simultaneously; we make an exact parallel between the degenerate affine and affine cases via a new algebra which takes the role of the affine braid group for the degenerate setting. A main result of this paper is an identification of the centers of the affine and degenerate affine BMW algebras in terms of rings of symmetric functions which satisfy a "cancellation property" or "wheel condition" (in the degenerate case, a reformulation of a result of Nazarov). Miraculously, these same rings also arise in Schubert calculus, as the cohomology and K-theory of isotropic Grassmanians and symplectic loop Grassmanians. We also establish new inte...

  3. Self Focussing as a Coherence Propagation Phenomena. An Application to Calculate the Coherence Length for an Atom Laser

    CERN Document Server

    Castellanos, L M

    2003-01-01

    A theoretical description in terms of the coherence propagation is given for self-focussing. The concept of coherence length is defined in terms of free, self-focussing propagation giving results in accordance with well known experimental criteria for the laser. Extension of the method is given for an Atom Laser showing good results in agreement with recents numerical results of Trippenbach et. al.: J. Phys. B:At. Mol. Opt. Phys. 33, 47-54 (2000).

  4. Affinity driven social networks

    Science.gov (United States)

    Ruyú, B.; Kuperman, M. N.

    2007-04-01

    In this work we present a model for evolving networks, where the driven force is related to the social affinity between individuals of a population. In the model, a set of individuals initially arranged on a regular ordered network and thus linked with their closest neighbors are allowed to rearrange their connections according to a dynamics closely related to that of the stable marriage problem. We show that the behavior of some topological properties of the resulting networks follows a non trivial pattern.

  5. Affine General Equilibrium Models

    OpenAIRE

    Bjørn Eraker

    2008-01-01

    No-arbitrage models are extremely flexible modelling tools but often lack economic motivation. This paper describes an equilibrium consumption-based CAPM framework based on Epstein-Zin preferences, which produces analytic pricing formulas for stocks and bonds under the assumption that macro growth rates follow affine processes. This allows the construction of equilibrium pricing formulas while maintaining the same flexibility of state dynamics as in no-arbitrage models. In demonstrating the a...

  6. Gaussian Affine Feature Detector

    OpenAIRE

    Xu, Xiaopeng; Zhang, Xiaochun

    2011-01-01

    A new method is proposed to get image features' geometric information. Using Gaussian as an input signal, a theoretical optimal solution to calculate feature's affine shape is proposed. Based on analytic result of a feature model, the method is different from conventional iterative approaches. From the model, feature's parameters such as position, orientation, background luminance, contrast, area and aspect ratio can be extracted. Tested with synthesized and benchmark data, the method achieve...

  7. Application of Adenosine Triphosphate Affinity Probe and Scheduled Multiple-Reaction Monitoring Analysis for Profiling Global Kinome in Human Cells in Response to Arsenite Treatment

    OpenAIRE

    Guo, Lei; Xiao, Yongsheng; Wang, Yinsheng

    2014-01-01

    Phosphorylation of cellular components catalyzed by kinases plays important roles in cell signaling and proliferation. Quantitative assessment of perturbation in global kinome may provide crucial knowledge for elucidating the mechanisms underlying the cytotoxic effects of environmental toxicants. Here, we utilized an adenosine triphosphate (ATP) affinity probe coupled with stable isotope labeling by amino acids in cell culture (SILAC) to assess quantitatively the arsenite-induced alteration o...

  8. On the Affine Isoperimetric Inequalities

    Indian Academy of Sciences (India)

    Wuyang Yu; Gangsong Leng

    2011-11-01

    We obtain an isoperimetric inequality which estimate the affine invariant -surface area measure on convex bodies. We also establish the reverse version of -Petty projection inequality and an affine isoperimetric inequality of $_{-p}K$.

  9. Adjoint affine fusion and tadpoles

    OpenAIRE

    Urichuk, Andrew; Walton, Mark A.

    2016-01-01

    We study affine fusion with the adjoint representation. For simple Lie algebras, elementary and universal formulas determine the decomposition of a tensor product of an integrable highest-weight representation with the adjoint representation. Using the (refined) affine depth rule, we prove that equally striking results apply to adjoint affine fusion. For diagonal fusion, a coefficient equals the number of nonzero Dynkin labels of the relevant affine highest weight, minus 1. A nice lattice-pol...

  10. Extended affine Weyl groups: Presentation by conjugation via integral collection

    OpenAIRE

    Azam, Saeid; Shahsanaei, Valiollah

    2009-01-01

    We give several necessary and sufficient conditions for the existence of {\\it the presentation by conjugation} for a non-simply laced extended affine Weyl group. We invent a computational tool by which one can determine simply the existence of the presentation by conjugation for an extended affine Weyl group. As an application, we determine the existence of the presentation by conjugation for a large class of extended affine Weyl groups.

  11. Streamlining the Pipeline for Generation of Recombinant Affinity Reagents by Integrating the Affinity Maturation Step

    Directory of Open Access Journals (Sweden)

    Renhua Huang

    2015-09-01

    Full Text Available Often when generating recombinant affinity reagents to a target, one singles out an individual binder, constructs a secondary library of variants, and affinity selects a tighter or more specific binder. To enhance the throughput of this general approach, we have developed a more integrated strategy where the “affinity maturation” step is part of the phage-display pipeline, rather than a follow-on process. In our new schema, we perform two rounds of affinity selection, followed by error-prone PCR on the pools of recovered clones, generation of secondary libraries, and three additional rounds of affinity selection, under conditions of off-rate competition. We demonstrate the utility of this approach by generating low nanomolar fibronectin type III (FN3 monobodies to five human proteins: ubiquitin-conjugating enzyme E2 R1 (CDC34, COP9 signalosome complex subunit 5 (COPS5, mitogen-activated protein kinase kinase 5 (MAP2K5, Splicing factor 3A subunit 1 (SF3A1 and ubiquitin carboxyl-terminal hydrolase 11 (USP11. The affinities of the resulting monobodies are typically in the single-digit nanomolar range. We demonstrate the utility of two binders by pulling down the targets from a spiked lysate of HeLa cells. This integrated approach should be applicable to directed evolution of any phage-displayed affinity reagent scaffold.

  12. Streamlining the Pipeline for Generation of Recombinant Affinity Reagents by Integrating the Affinity Maturation Step.

    Science.gov (United States)

    Huang, Renhua; Gorman, Kevin T; Vinci, Chris R; Dobrovetsky, Elena; Gräslund, Susanne; Kay, Brian K

    2015-01-01

    Often when generating recombinant affinity reagents to a target, one singles out an individual binder, constructs a secondary library of variants, and affinity selects a tighter or more specific binder. To enhance the throughput of this general approach, we have developed a more integrated strategy where the "affinity maturation" step is part of the phage-display pipeline, rather than a follow-on process. In our new schema, we perform two rounds of affinity selection, followed by error-prone PCR on the pools of recovered clones, generation of secondary libraries, and three additional rounds of affinity selection, under conditions of off-rate competition. We demonstrate the utility of this approach by generating low nanomolar fibronectin type III (FN3) monobodies to five human proteins: ubiquitin-conjugating enzyme E2 R1 (CDC34), COP9 signalosome complex subunit 5 (COPS5), mitogen-activated protein kinase kinase 5 (MAP2K5), Splicing factor 3A subunit 1 (SF3A1) and ubiquitin carboxyl-terminal hydrolase 11 (USP11). The affinities of the resulting monobodies are typically in the single-digit nanomolar range. We demonstrate the utility of two binders by pulling down the targets from a spiked lysate of HeLa cells. This integrated approach should be applicable to directed evolution of any phage-displayed affinity reagent scaffold. PMID:26437402

  13. Numerical and experimental analysis of transient wave propagation through perforated plates for application to the simulation of LOCA in PWR

    International Nuclear Information System (INIS)

    Highlights: ► LOCA simulation: analyze effects of perforated plates on rarefaction waves propagation at reactor level. ► Localized impedance relations to account for singular head loss and acoustic delays. ► Experimental campaign to produce a reference solution for wave propagation through a thickorifice plate. ► Qualification of a reference CFD code to produce reflection/transmission solutions for any geometry. ► Calibration procedure for impedance relations using CFD reference solutions. - Abstract: Loss of coolant accident is characterized by a transient rarefaction wave propagating inside the primary loop after pipe break, resulting in fluid loading on internal structures, especially on the baffle surrounding the reactor core. In that case, loading comes from differences in rarefaction wave travel times, whether it propagates through the reactor core or through the by-pass between baffle and core barrel, yielding delays and pressure differences on both sides of baffle plates. Propagation is strongly influenced by geometric obstacles such as holes in baffle reinforcement plates, which cannot be represented in a numerical model of the whole primary loop and has then to be replaced by suitable impedance relations. A methodology to validate and calibrate such impedance models, based on specific experimental results and high-order CFD simulations, is thus proposed. Models are tested and integrated into EUROPLEXUS fast-transient fluid–structure dynamics software.

  14. Application of Advection-Diffusion Routing Model to Flood Wave Propagation:A Case Study on Big Piney River, Missouri USA

    Institute of Scientific and Technical Information of China (English)

    Yang Yang; Theodore A Endreny; David J Nowak

    2016-01-01

    Flood wave propagation modeling is of critical importance to advancing water re-sources management and protecting human life and property. In this study, we investigated how the advection-diffusion routing model performed in flood wave propagation on a 16 km long down-stream section of the Big Piney River, MO. Model performance was based on gaging station data at the upstream and downstream cross sections. We demonstrated with advection-diffusion theory that for small differences in watershed drainage area between the two river cross sections, inflow along the reach mainly contributes to the downstream hydrograph’s rising limb and not to the falling limb. The downstream hydrograph’s falling limb is primarily determined by the propagated flood wave originating at the upstream cross section. This research suggests the parameter for the advection-diffusion routing model can be calibrated by fitting the hydrograph falling limb. Application of the advection diffusion model to the flood wave of January 29, 2013 supports our theoretical finding that the propagated flood wave determines the downstream cross section falling limb, and the model has good performance in our test examples.

  15. A Comment on a Novel Approach for the Registration of Weak Affine Images

    Czech Academy of Sciences Publication Activity Database

    Flusser, Jan; Zitová, Barbara

    2013-01-01

    Roč. 34, č. 12 (2013), s. 1381-1385. ISSN 0167-8655 R&D Projects: GA ČR GAP103/11/1552 Keywords : Image registration * Affine transform * Affine subgroups * Weak affine transform * Area-preserving affine transform Subject RIV: JD - Computer Applications, Robotics Impact factor: 1.062, year: 2013 http://library.utia.cas.cz/separaty/2013/ZOI/flusser-a comment on a novel approach for the registration of weak affine images.pdf

  16. A forecasting system using the parabolic equation: Application to surface-to-air propagation in the presence of elevated layers

    Science.gov (United States)

    Craig, K. H.; Levy, M. F.

    1989-09-01

    The parabolic equation approach to clear-air propagation modeling overcomes many of the difficulties associated with ray and mode theory methods. A parabolic equation model was implemented on a PC based system using a transputer to carry out the computationally intensive numerical integrations. The model was used from VHF to millimetric frequencies and applied to evaporation duct and elevated duct problems. The latter are important for surface-to-air propagation and were difficult to solve because of the complicated structure of the layers. A case study of an elevated duct caused by anticyclonic subsidence shows the importance of up-to-date meteorological data from a wide geographical area. A full-wave calculation of the wideband properties of the propagation channel illustrates the possibilities opened up by the new model. The frequency selective effects can be large, and are sensitive to the small-scale structure of the ducting layers.

  17. Frequency analysis of wave propagation into a visco-elastic medium-application to heated clay behaviour

    International Nuclear Information System (INIS)

    The cross-hole method is used to measure wave propagation velocity and define elastic characteristics of a soil. Fourier spectrum of wave propagated into any medium depends on the characteristics of the medium too. So, spectral analysis can be used to study soil behavior and soil improvement. Several experiments conducted to control soil injection by spectral analysis show a spectral shift to high frequency in well injected medium. Both models written, the first one SEOD, by Girardi - SNCF and the second one DOSCH, by Crepel - COYNE et BELLIER use wave propagation into a Kelvin-Voigt visco-elastic medium. They show the same shift to high frequencies due to an increase of elastic constants and Quality factor. Such a method can be applied to heated clay survey almost without any change

  18. On the Theory and Numerical Simulation of Cohesive Crack Propagation with Application to Fiber-Reinforced Composites

    Science.gov (United States)

    Rudraraju, Siva Shankar; Garikipati, Krishna; Waas, Anthony M.; Bednarcyk, Brett A.

    2013-01-01

    The phenomenon of crack propagation is among the predominant modes of failure in many natural and engineering structures, often leading to severe loss of structural integrity and catastrophic failure. Thus, the ability to understand and a priori simulate the evolution of this failure mode has been one of the cornerstones of applied mechanics and structural engineering and is broadly referred to as "fracture mechanics." The work reported herein focuses on extending this understanding, in the context of through-thickness crack propagation in cohesive materials, through the development of a continuum-level multiscale numerical framework, which represents cracks as displacement discontinuities across a surface of zero measure. This report presents the relevant theory, mathematical framework, numerical modeling, and experimental investigations of through-thickness crack propagation in fiber-reinforced composites using the Variational Multiscale Cohesive Method (VMCM) developed by the authors.

  19. Contribution to the determination of the double angular and energy differential neutron albedo. Application to the propagation in lacunar medium

    International Nuclear Information System (INIS)

    This thesis deals with the neutrons propagation by reflection on the vacuum-matter interfaces of a lacunar medium, to control the direct irradiation risk. The more efficient method to simulate this propagation is the use of reflection coefficients (albedo). The first part of the work deals with the generation of albedo for various materials. The Monte Carlo method has been chosen and a new estimator has been developed and validated in the Monte Carlo transport code TRIPOLI4. This estimator is based on the neutrons transport simulation in the matter, to calculate in each collision point the double differential reflexions probability. The second part deals with the implementing of an interpolation module of the generated albedo in a library. These differential albedo of neutrons allow the study of the neutrons propagation by multi-reflections and the accurate calculation of the equivalent dose rate generated by the neutrons reflections. (A.L.B.)

  20. Gaussian Affine Feature Detector

    CERN Document Server

    Xu, Xiaopeng

    2011-01-01

    A new method is proposed to get image features' geometric information. Using Gaussian as an input signal, a theoretical optimal solution to calculate feature's affine shape is proposed. Based on analytic result of a feature model, the method is different from conventional iterative approaches. From the model, feature's parameters such as position, orientation, background luminance, contrast, area and aspect ratio can be extracted. Tested with synthesized and benchmark data, the method achieves or outperforms existing approaches in term of accuracy, speed and stability. The method can detect small, long or thin objects precisely, and works well under general conditions, such as for low contrast, blurred or noisy images.

  1. Track parameter propagation through the application of a new adaptive Runge-Kutta-Nystroem method in the ATLAS experiment

    International Nuclear Information System (INIS)

    In this paper we study several fixed step and adaptive Runge-Kutta methods suitable for transporting track parameters through an inhomogeneous magnetic field. Moreover, we present a new adaptive Runge-Kutta-Nystroem method which estimates the local error of the extrapolation without introducing extra stages to the original Runge-Kutta-Nystroem method. Furthermore, these methods are compared for propagation accuracy and computing cost efficiency in the simultaneous track and error propagation (STEP) algorithm of the common ATLAS tracking software. The tests show the new adaptive Runge-Kutta-Nystroem method to be the most computing cost efficient.

  2. On the application of locally adaptive unstructured grids to the problems of blast wave propagation and attenuation

    International Nuclear Information System (INIS)

    The problem of blast wave propagation and attenuation have always been of considerable basic and practical interest. Due to diffraction effects, reflections and possible focusing, blast wave intensity may vary considerably even at the same distance from the explosion center. From the computational point of view, these problems deal typically with computational domains of complex geometry, often requiring the resolution of gas dynamics phenomena having characteristic scales much smaller than the scale of a computational domain. This paper presents experiences and capabilities in applying the above techniques to various practical problems involving blast wave propagation and attenuation

  3. Isolation of specific anti-T3 and anti-T4 antibodies by affinity chromatography and their application for solid phase radioimmunoassay

    International Nuclear Information System (INIS)

    For laboratory, clinical and experimental purposes highly purified and high avidity antibodies, devoid of other plasma proteins, are required. Hitherto physical and chemical methods have not provided antibodies of sufficient purity, and it was only the introduction of affinity chromatography which achieved antibodies of required purity. Various suports /Affi-Gel 10, CNBr-activated Sepharose 4B, AH-Sepharose 4B and Epoxy-activated Sepharose 6B/ were tried for immobilization of iodothyronines. From these materials Epoxy-activated Sepharose 6B gave most satisfactory results, hence some details of the coupling procedure are given

  4. Predicting binding affinities of protein ligands from three-dimensional models: application to peptide binding to class I major histocompatibility proteins

    DEFF Research Database (Denmark)

    Rognan, D; Lauemoller, S L; Holm, A; Buus, S; Tschinke, V

    1999-01-01

    A simple and fast free energy scoring function (Fresno) has been developed to predict the binding free energy of peptides to class I major histocompatibility (MHC) proteins. It differs from existing scoring functions mainly by the explicit treatment of ligand desolvation and of unfavorable protein...... interactions were found to contribute the most to HLA-A0201-peptide interactions, whereas H-bonding predominates in H-2K(k) recognition. Both cross-validated models were afterward used to predict the binding affinity of a test set of 26 peptides to HLA-A0204 (an HLA allele closely related to HLA-A0201) and of...

  5. On constructing purely affine theories with matter

    Science.gov (United States)

    Cervantes-Cota, Jorge L.; Liebscher, D.-E.

    2016-08-01

    We explore ways to obtain the very existence of a space-time metric from an action principle that does not refer to it a priori. Although there are reasons to believe that only a non-local theory can viably achieve this goal, we investigate here local theories that start with Schrödinger's purely affine theory (Schrödinger in Space-time structure. Cambridge UP, Cambridge, 1950), where he gave reasons to set the metric proportional to the Ricci curvature aposteriori. When we leave the context of unified field theory, and we couple the non-gravitational matter using some weak equivalence principle, we can show that the propagation of shock waves does not define a lightcone when the purely affine theory is local and avoids the explicit use of the Ricci tensor in realizing the weak equivalence principle. When the Ricci tensor is substituted for the metric, the equations seem to have only a very limited set of solutions. This backs the conviction that viable purely affine theories have to be non-local.

  6. On constructing purely affine theories with matter

    CERN Document Server

    Cervantes-Cota, Jorge L

    2016-01-01

    We explore ways to obtain the very existence of a space-time metric from an action principle that does not refer to it a priori. Although there are reasons to believe that only a non-local theory can viably achieve this goal, we investigate here local theories that start with Schroedinger's purely affine theory [21], where he gave reasons to set the metric proportional to the Ricci curvature aposteriori. When we leave the context of unified field theory, and we couple the non-gravitational matter using some weak equivalence principle, we can show that the propagation of shock waves does not define a lightcone when the purely affine theory is local and avoids the explicit use of the Ricci tensor in realizing the weak equivalence principle. When the Ricci tensor is substituted for the metric, the equations seem to have only a very limited set of solutions. This backs the conviction that viable purely affine theories have to be non-local.

  7. Experimental investigation of the formation and propagation of plasma jets created by a power laser: application to laboratory astrophysics

    International Nuclear Information System (INIS)

    Plasma jets are often observed in the polar regions of Young Stellar Objects (YSO). For a better understanding of the whole processes at the origin of their formation and evolution, this research thesis aims at demonstrating the feasibility of a plasma jet generation by a power laser, and at investigating its characteristics. After a detailed description of Young Stellar Objects jets and an overview of theoretical models, the author describes some experiments performed with gas guns, pulsed machines and power lasers. He describes means of generation of a jet by laser interaction via strong shock propagation. He reports experimental work, describing the target, laser operating conditions and the determination of jet parameters: speed, temperature, density. Then, he introduces results obtained for plasma jet propagation in vacuum, describes their evolution with respect to initial conditions (target type, laser operating conditions), and identifies optimal conditions for generating a jet similar to that in astrophysical conditions. He considers their propagation in ambient medium like for YSO jets in interstellar medium. Two distinct cases are investigated: collision of two successive shocks in a gaseous medium, and propagation of a plasma jet in a gas jet

  8. An application of nonlinear supratransmission to the propagation of binary signals in weakly damped, mechanical systems of coupled oscillators

    Energy Technology Data Exchange (ETDEWEB)

    Macias-Diaz, J.E. [Departamento de Matematicas y Fisica, Universidad Autonoma de Aguascalientes, Aguascalientes, Ags. 20100 (Mexico) and Department of Physics, University of New Orleans, New Orleans, LA 70148 (United States)]. E-mail: jemacias@correo.uaa.mx; Puri, A. [Department of Physics, University of New Orleans, New Orleans, LA 70148 (United States)]. E-mail: apuri@uno.edu

    2007-07-02

    In the present Letter, we simulate the propagation of binary signals in semi-infinite, mechanical chains of coupled oscillators harmonically driven at the end, by making use of the recently discovered process of nonlinear supratransmission. Our numerical results-which are based on a brand-new computational technique with energy-invariant properties-show an efficient and reliable transmission of information.

  9. Development and Application of Benchmark Examples for Mixed-Mode I/II Quasi-Static Delamination Propagation Predictions

    Science.gov (United States)

    Krueger, Ronald

    2012-01-01

    The development of benchmark examples for quasi-static delamination propagation prediction is presented. The example is based on a finite element model of the Mixed-Mode Bending (MMB) specimen for 50% mode II. The benchmarking is demonstrated for Abaqus/Standard, however, the example is independent of the analysis software used and allows the assessment of the automated delamination propagation prediction capability in commercial finite element codes based on the virtual crack closure technique (VCCT). First, a quasi-static benchmark example was created for the specimen. Second, starting from an initially straight front, the delamination was allowed to propagate under quasi-static loading. Third, the load-displacement as well as delamination length versus applied load/displacement relationships from a propagation analysis and the benchmark results were compared, and good agreement could be achieved by selecting the appropriate input parameters. The benchmarking procedure proved valuable by highlighting the issues associated with choosing the input parameters of the particular implementation. Overall, the results are encouraging, but further assessment for mixed-mode delamination fatigue onset and growth is required.

  10. Propagation of waves

    CERN Document Server

    David, P

    2013-01-01

    Propagation of Waves focuses on the wave propagation around the earth, which is influenced by its curvature, surface irregularities, and by passage through atmospheric layers that may be refracting, absorbing, or ionized. This book begins by outlining the behavior of waves in the various media and at their interfaces, which simplifies the basic phenomena, such as absorption, refraction, reflection, and interference. Applications to the case of the terrestrial sphere are also discussed as a natural generalization. Following the deliberation on the diffraction of the "ground? wave around the ear

  11. A New Method for Navigating Optimal Direction for Pulling Ligand from Binding Pocket: Application to Ranking Binding Affinity by Steered Molecular Dynamics.

    Science.gov (United States)

    Vuong, Quan Van; Nguyen, Tin Trung; Li, Mai Suan

    2015-12-28

    In this paper we present a new method for finding the optimal path for pulling a ligand from the binding pocket using steered molecular dynamics (SMD). Scoring function is defined as the steric hindrance caused by a receptor to ligand movement. Then the optimal path corresponds to the minimum of this scoring function. We call the new method MSH (Minimal Steric Hindrance). Contrary to existing navigation methods, our approach takes into account the geometry of the ligand while other methods including CAVER only consider the ligand as a sphere with a given radius. Using three different target + receptor sets, we have shown that the rupture force Fmax and nonequilibrium work Wpull obtained based on the MSH method show a much higher correlation with experimental data on binding free energies compared to CAVER. Furthermore, Wpull was found to be a better indicator for binding affinity than Fmax. Thus, the new MSH method is a reliable tool for obtaining the best direction for ligand exiting from the binding site. Its combination with the standard SMD technique can provide reasonable results for ranking binding affinities using Wpull as a scoring function. PMID:26595261

  12. Application of the Gaussian beam summation method to the study of the ultrasonic wave propagation in a turbulent medium

    International Nuclear Information System (INIS)

    Some systems for the control and the surveillance of fast reactors are based on the characteristics of the ultrasonic wave propagation. We present here the results of a numerical and experimental study of ultrasonic propagation in a thermal turbulent medium. A numerical model, based on the technique of superposition of discrete Fourier modes for representing isotropic and homogeneous turbulence and on the Gaussian beam summation method for calculating the acoustic field, has been implemented in order to study the propagation of a point source wave in a bidimensional turbulent medium. Our model is based on the following principle: the medium is represented by a great number of independent realizations of a turbulent field and for each of them we calculate the acoustic field in a deterministic way. Statistics over a great number of realizations enable us to access to the different quantities of the distorted acoustic field: variance of the time of flight fluctuations, scintillation index and intensity probability density function. In the case of small fluctuations, the results for these three quantities are in a good agreement with analytical solutions. When the level of the fluctuations grows, the model predicts correct evolutions. However, a great sensitivity to the location of a receiver in the vicinity of a caustic has been proved. Calculations in the temporal domain have also been performed. They give an illustration of the possible effects of the turbulence on an impulsion signal. An experimental device, fitted with thermocouples and acoustic transducers, has been used to study the ultrasonic propagation in turbulent water. The different measures permitted to characterize the turbulent field and to get aware of the effect of the turbulence on the acoustic propagation. The acoustical measures agree well with the analytical solution of Chernov and Rytov. They are show the importance of the knowledge of the real spectrum of the fluctuations and the limitations of

  13. Affinity Purification of Insulin by Peptide-Ligand Affinity Chromatography

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The affinity heptapeptide (HWWWPAS) for insulin, selected from phage display library,was coupled to EAH Sepharose 4B gel and packed to a 1-mL column. The column was used for the affinity purification of insulin from protein mixture and commercial insulin preparation. It was observed that the minor impurity in the commercial insulin was removed by the affinity chromatography. Nearly 40 mg of insulin could be purified with the 1-mL affinity column. The results revealed the high specificity and capacity of the affinity column for insulin purification. Moreover, based on the analysis of the amino acids in the peptide sequence, shorter peptides were designed and synthesized for insulin chromatography. As a result, HWWPS was found to be a good alternative to HWWWPAS, while the other two peptides with three or four amino acids showed weak affinity for insulin. The results indicated that the peptide sequence of HWWWPAS was quite conservative for specific binding of insulin.

  14. An affine framework for analytical mechanics

    OpenAIRE

    Urbanski, Pawel

    2003-01-01

    An affine Cartan calculus is developed. The concepts of special affine bundles and special affine duality are introduced. The canonical isomorphisms, fundamental for Lagrangian and Hamiltonian formulations of the dynamics in the affine setting are proved.

  15. In vitro affinity maturation of a natural human antibody overcomes a barrier to in vivo affinity maturation

    Science.gov (United States)

    Li, Bing; Fouts, Ashley E; Stengel, Katharina; Luan, Peng; Dillon, Michael; Liang, Wei-Ching; Feierbach, Becket; Kelley, Robert F; Hötzel, Isidro

    2014-01-01

    Antibodies isolated from human donors are increasingly being developed for anti-infective therapeutics. These antibodies undergo affinity maturation in vivo, minimizing the need for engineering of therapeutic leads for affinity. However, the affinities required for some therapeutic applications may be higher than the affinities of the leads obtained, requiring further affinity maturation in vitro. To improve the neutralization potency of natural human antibody MSL-109 targeting human cytomegalovirus (CMV), we affinity matured the antibody against the gH/gL glycoprotein complex. A phage display library where most of the six complementary-determining regions (CDRs) were allowed to vary in only one amino acid residue at a time was used to scan for mutations that improve binding affinity. A T55R mutation and multiple mutations in position 53 of the heavy chain were identified that, when present individually or in combination, resulted in higher apparent affinities to gH/gL and improved CMV neutralization potency of Fab fragments expressed in bacterial cells. Three of these mutations in position 53 introduced glycosylation sites in heavy chain CDR 2 (CDR H2) that impaired binding of antibodies expressed in mammalian cells. One high affinity (KD < 10 pM) variant was identified that combined the D53N and T55R mutations while avoiding glycosylation of CDR H2. However, all the amino acid substitutions identified by phage display that improved binding affinity without introducing glycosylation sites required between two and four simultaneous nucleotide mutations to avoid glycosylation. These results indicate that the natural human antibody MSL-109 is close to a local affinity optimum. We show that affinity maturation by phage display can be used to identify and bypass barriers to in vivo affinity maturation of antibodies imposed by glycosylation and codon usage. These constraints may be relatively prevalent in human antibodies due to the codon usage and the amino acid

  16. Adjoint affine fusion and tadpoles

    Science.gov (United States)

    Urichuk, Andrew; Walton, Mark A.

    2016-06-01

    We study affine fusion with the adjoint representation. For simple Lie algebras, elementary and universal formulas determine the decomposition of a tensor product of an integrable highest-weight representation with the adjoint representation. Using the (refined) affine depth rule, we prove that equally striking results apply to adjoint affine fusion. For diagonal fusion, a coefficient equals the number of nonzero Dynkin labels of the relevant affine highest weight, minus 1. A nice lattice-polytope interpretation follows and allows the straightforward calculation of the genus-1 1-point adjoint Verlinde dimension, the adjoint affine fusion tadpole. Explicit formulas, (piecewise) polynomial in the level, are written for the adjoint tadpoles of all classical Lie algebras. We show that off-diagonal adjoint affine fusion is obtained from the corresponding tensor product by simply dropping non-dominant representations.

  17. Adjoint affine fusion and tadpoles

    CERN Document Server

    Urichuk, Andrew

    2016-01-01

    We study affine fusion with the adjoint representation. For simple Lie algebras, elementary and universal formulas determine the decomposition of a tensor product of an integrable highest-weight representation with the adjoint representation. Using the (refined) affine depth rule, we prove that equally striking results apply to adjoint affine fusion. For diagonal fusion, a coefficient equals the number of nonzero Dynkin labels of the relevant affine highest weight, minus 1. A nice lattice-polytope interpretation follows, and allows the straightforward calculation of the genus-1 1-point adjoint Verlinde dimension, the adjoint affine fusion tadpole. Explicit formulas, (piecewise) polynomial in the level, are written for the adjoint tadpoles of all classical Lie algebras. We show that off-diagonal adjoint affine fusion is obtained from the corresponding tensor product by simply dropping non-dominant representations.

  18. Baroclinicity, forcing mechanism and prediction of chemical propagation of San Diego Bay and their effects on naval applications

    OpenAIRE

    Kyriakidis, Kleanthis

    2005-01-01

    Both instantaneous current and chemical propagation predictions are of utmost importance for all littoral naval operations, including diving, amphibious and mine warfare ones. Undoubtedly, the operating limits and environmental thresholds are crucial and highly reliant on the accuracy and precision of the predictions. San Diego Bay is important because it hosts a large part of the U.S. fleet and has special ecological significance. A hydrodynamic model, "Water Quality Management and Analysis ...

  19. Applications of velocity potential function to acoustic duct propagation and radiation from inlets using finite element theory

    Science.gov (United States)

    Baumeister, K. J.; Majjigi, R. K.

    1979-01-01

    A finite element velocity potential program has been developed to study acoustic wave propagation in complex geometries. For irrotational flows, relatively low sound frequencies, and plane wave input, the finite element solutions show significant effects of inlet curvature and flow gradients on the attenuation of a given acoustic liner in a realistic variable area turbofan inlet. In addition, as shown in the paper, the velocity potential approach can not be used to estimate the effects of rotational flow on acoustic propagation since the potential acoustic disturbances propagate at the speed of the media in sheared flow. Approaches are discussed that are being considered for extending the finite element solution to include the far field as well as the internal portion of the duct. A new matrix partitioning approach is presented that can be incorporated in previously developed programs to allow the finite element calculation to be marched into the far field. The partitioning approach provides a large reduction in computer storage and running times.

  20. Wave propagation in a viscous fluid with a pipeline shear mean flow and application for ultrasonic flow meter

    Science.gov (United States)

    Chen, Yong; Huang, Yiyong; Chen, Xiaoqian

    2013-11-01

    This paper deals with the problem of wave propagation in a compressible viscous fluid confined by a rigid-walled circular pipeline in the presence of a shear mean flow. On the assumption of isentropic and axisymmetric wave propagation, the convected acoustic equations are mathematically deduced from the conservations of continuity and momentum, leading to a set of coupled second-order differential equations with respect of the acoustic pressure and velocity components in radial and axial directions. A solution based on the Fourier-Bessel theory, which is complete and orthogonal in Lebesgue space, is introduced to transform the differential equations to an infinite set of homogeneous algebraic equations, thus the wave number can be calculated due to the existence condition of a non-trivial solution. After the discussion of the method's convergence, the cut-off frequency of the wave mode is theoretically analyzed. Furthermore, wave attenuation of the first four wave modes due to fluid viscosity is numerically studied in the presence of the laminar and turbulent flow profiles. Meanwhile, the measurement performance of an ultrasonic flow meter based on the difference of downstream and upstream wave propagations is parametrically addressed.

  1. Rift propagation

    Science.gov (United States)

    Parmentier, E. M.; Schubert, G.

    1989-01-01

    A model for rift propagation which treats the rift as a crack in an elastic plate which is filled from beneath by upwelling viscous asthenosphere as it lengthens and opens. Growth of the crack is driven by either remotely applied forces or the pressure of buoyant asthenosphere in the crack and is resisted by viscous stresses associated with filling the crack. The model predicts a time for a rift to form which depends primarily on the driving stress and asthenosphere viscosity. For a driving stress on the order of 10 MPa, as expected from the topography of rifted swells, the development of rifts over times of a few Myr requires an asthenosphere viscosity of 10 to the 16th Pa s (10 to the 17th poise). This viscosity, which is several orders of magnitude less than values determined by postglacial rebound and at least one order of magnitude less than that inferred for spreading center propagation, may reflect a high temperature or large amount of partial melting in the mantle beneath a rifted swell.

  2. Application of back-propagation artificial neural network and curve estimation in pharmacokinetics of losartan in rabbit

    OpenAIRE

    Lin, Bin; Lin, Gaotong; Liu, Xianyun; Ma, Jianshe; Wang, Xianchuan; Lin, Feiyan; Hu, Lufeng

    2015-01-01

    In order to develop pharmacokinetic model, a well-known multilayer feed-forward algorithm back-propagation artificial neural networks (BP-ANN) was applied to the pharmacokinetics of losartan in rabbit. The plasma concentrations of losartan in twelve rabbits, which were divided into two groups and given losartan 2 mg/kg by intravenous (Iv) and intragastrical (Ig) administration, were determined by LC-MS. The BP-ANN model included one input layer, hidden layers, and one output layer was constru...

  3. Non linear shock wave propagation in heterogeneous fluids: a numerical approach beyond the parabolic approximation with application to sonic boom.

    Science.gov (United States)

    Dagrau, Franck; Coulouvrat, François; Marchiano, Régis; Héron, Nicolas

    2008-06-01

    Dassault Aviation as a civil aircraft manufacturer is studying the feasibility of a supersonic business jet with the target of an "acceptable" sonic boom at the ground level, and in particular in case of focusing. A sonic boom computational process has been performed, that takes into account meteorological effects and aircraft manoeuvres. Turn manoeuvres and aircraft acceleration create zones of convergence of rays (caustics) which are the place of sound amplification. Therefore two elements have to be evaluated: firstly the geometrical position of the caustics, and secondly the noise level in the neighbourhood of the caustics. The modelling of the sonic boom propagation is based essentially on the assumptions of geometrical acoustics. Ray tracing is obtained according to Fermat's principle as paths that minimise the propagation time between the source (the aircraft) and the receiver. Wave amplitude and time waveform result from the solution of the inviscid Burgers' equation written along each individual ray. The "age variable" measuring the cumulative nonlinear effects is linked to the ray tube area. Caustics are located as the place where the ray tube area vanishes. Since geometrical acoustics does not take into account diffraction effects, it breaks down in the neighbourhood of caustics where it would predict unphysical infinite pressure amplitude. The aim of this study is to describe an original method for computing the focused noise level. The approach involves three main steps that can be summarised as follows. The propagation equation is solved by a forward marching procedure split into three successive steps: linear propagation in a homogeneous medium, linear perturbation due to the weak heterogeneity of the medium, and non-linear effects. The first step is solved using an "exact" angular spectrum algorithm. Parabolic approximation is applied only for the weak perturbation due to the heterogeneities. Finally, non linear effects are performed by solving the

  4. Improved native affinity purification of RNA.

    Science.gov (United States)

    Batey, Robert T; Kieft, Jeffrey S

    2007-08-01

    RNA biochemical or structural studies often require an RNA sample that is chemically pure, and most protocols for its in vitro production use denaturing polyacrylamide gel electrophoresis to achieve this. Unfortunately, many RNAs do not quantitatively refold into an active conformation after denaturation, creating significant problems for downstream characterization or use. In addition, this traditional purification method is not amenable to studies demanding high-throughput RNA production. Recently, we presented the first general method for producing almost any RNA sequence that employs an affinity tag that is removed during the purification process. Because technical difficulties prevented application of this method to many RNAs, we have developed an improved version that utilizes a different activatable ribozyme and affinity tag that are considerably more robust, rapid, and broadly applicable. PMID:17548432

  5. Effect of different conditions and gamma irradiation on the dyeing affinity of natural and synthetic fabrics for cinnamic Acid derivative as a new application

    International Nuclear Information System (INIS)

    Cinnamic acid derivative; cinnamic acid,α-cyano-p dimethylamino-ethyl ester (CCDE) was used as a dye for different textile fabrics such as wool, nylon, polyester and wool/ polyester blend. The factors that may affect the dyeing process such as usual additives (carriers and dispersing agents), solvent, ph, dyeing temperature, dyeing time, CCDE concentration and irradiation dose were studied. The results of colour strength measurements indicate that irradiation prior to dyeing has no significant effect on the dye ability of nylon, polyester and wool/polyester blend. However, irradiation of wool fabrics prior to dyeing leads to slight improvement in the dye ability comared to the unirradiated fabric. Also, the dyeing affinity in the terms of colour strength was found to depend on the ph of the medium, in which the highest colour strength was achived at ph 4. Meanwhile, it was found that the solvents and usual dyeing additives have a significant effect on the dye ability. In this regard, the highest colour stringht was obtained by using benzyl alcohol (BA) and a carrier agent

  6. Effect of cutting diameter and hormonal application on the propagation of Ficus roxburghii Wall. through branch cuttings

    Directory of Open Access Journals (Sweden)

    Rakeshwar Singh Rana

    2012-05-01

    Full Text Available Fruit gathering from Ficus roxburghii Wall., a multipurpose tree,hinders its regeneration through seed. The present study was undertaken to propagate this species using branch cuttings treated with different hormones in two different seasons: rainy-July and spring-March. In both seasons (rainy and spring, large sized (1.25-2.5 cm diameter cuttings resulted in statistically higher growth of all the studied parameters than that of small sized (< 1.25 cm diameter cuttings, except the number of shoots in both the seasonsand number of lateral roots in rainy season. The effect of hormonal treatments(Indole-acetic acid, Indole-butyric acid and Naphthyl-acetic acidwas also significant on all the studied parameters in both the study seasons except in the case of number of shoots in rainy season where the influence was not-significant. The interaction large size x IBA 100 ppm resulted in significantly better growth of the studied parameters in both seasons except for the number of lateral roots, number of shoots, shoot length and number of leaves in rainy season. This study implies that species is amenable to cloning with different hormonal treatments. In general, it was observed that growth and development of cuttings was better in spring than the rainy season.Therefore, for the successful propagation of Ficus roxburghii, largesized cuttings are to be treated with IBA 100 ppm and be planted in spring.

  7. Sound propagation in narrow tubes including effects of viscothermal and turbulent damping with application to charge air coolers

    Science.gov (United States)

    Knutsson, Magnus; Åbom, Mats

    2009-02-01

    Charge air coolers (CACs) are used on turbocharged internal combustion engines to enhance the overall gas-exchange performance. The cooling of the charged air results in higher density and thus volumetric efficiency. It is also important for petrol engines that the knock margin increases with reduced charge air temperature. A property that is still not very well investigated is the sound transmission through a CAC. The losses, due to viscous and thermal boundary layers as well as turbulence, in the narrow cooling tubes result in frequency dependent attenuation of the transmitted sound that is significant and dependent on the flow conditions. Normally, the cross-sections of the cooling tubes are neither circular nor rectangular, which is why no analytical solution accounting for a superimposed mean flow exists. The cross-dimensions of the connecting tanks, located on each side of the cooling tubes, are large compared to the diameters of the inlet and outlet ducts. Three-dimensional effects will therefore be important at frequencies significantly lower than the cut-on frequencies of the inlet/outlet ducts. In this study the two-dimensional finite element solution scheme for sound propagation in narrow tubes, including the effect of viscous and thermal boundary layers, originally derived by Astley and Cummings [Wave propagation in catalytic converters: Formulation of the problem and finite element scheme, Journal of Sound and Vibration 188 (5) (1995) 635-657] is used to extract two-ports to represent the cooling tubes. The approximate solutions for sound propagation, accounting for viscothermal and turbulent boundary layers derived by Dokumaci [Sound transmission in narrow pipes with superimposed uniform mean flow and acoustic modelling of automobile catalytic converters, Journal of Sound and Vibration 182 (5) (1995) 799-808] and Howe [The damping of sound by wall turbulent shear layers, Journal of the Acoustical Society of America 98 (3) (1995) 1723-1730], are

  8. Affinity composite cryogel discs functionalized with Reactive Red 120 and Green HE 4BD dye ligands: Application on the separation of human immunoglobulin G subclasses

    Energy Technology Data Exchange (ETDEWEB)

    Huseynli, Sabina; Baydemir, Gözde; Sarı, Esma [Department of Chemistry, Biochemistry Division, Hacettepe University, Ankara (Turkey); Elkak, Assem [Laboraory of “Valorisation des Ressources Naturelles et Produits de Santé (VRNPS)”, Doctoral School of Sciences and Technology, Lebanese University, Rafic Hariri University Campus, Hadath (Lebanon); Denizli, Adil, E-mail: denizli@hacettepe.edu.tr [Department of Chemistry, Biochemistry Division, Hacettepe University, Ankara (Turkey)

    2015-01-01

    Naturally produced by the human immune system, immunoglobulin nowadays is widely used for in vivo and in vitro purposes. The increased needs for pure immunoglobulin have prompted researchers to find new immunoglobulin chromatographic separation processes. Cryogels as chromatographic adsorbents, congregate several mechanical features including good compatibility, large pore structure, flexibility, short diffusion pathway and stability. These different characteristics make them a good alternative to conventional chromatographic methods and allowing their potential use in separation technology. In the present study, two sets of poly(2-hydroxyethyl methacrylate) (PHEMA) based beads were prepared and functionalized with Reactive Red 120 (RR) and Reactive Green HE 4BD (RG) dyes, and then embedded into supermacroporous cryogels. The morphology, physical and chemical features of the prepared bead embedded composite cryogel discs (CCDs) were performed by scanning electron microscopy (SEM), swelling test, elemental analysis and Fourier transform infrared spectroscopy (FTIR). The results showed that the embedded composite cryogel discs have a specific surface area of 192.0 m{sup 2}/g with maximum adsorption capacity of HIgG 239.8 mg/g for the RR functionalized CCD and 170 mg/g for RG functionalized CCD columns, both at pH 6.2. - Highlights: • Dye attached composite cryogel discs were prepared to separate HIgG subclasses. • Composite cryogels characterized by swelling, FTIR, SEM and elemental analysis. • Reactive Green HE 4B and Reactive Red 120 dyes were used as the affinity ligand. • HIgG and subclasses were separate from both aqueous solution and human plasma.

  9. Affinity composite cryogel discs functionalized with Reactive Red 120 and Green HE 4BD dye ligands: Application on the separation of human immunoglobulin G subclasses

    International Nuclear Information System (INIS)

    Naturally produced by the human immune system, immunoglobulin nowadays is widely used for in vivo and in vitro purposes. The increased needs for pure immunoglobulin have prompted researchers to find new immunoglobulin chromatographic separation processes. Cryogels as chromatographic adsorbents, congregate several mechanical features including good compatibility, large pore structure, flexibility, short diffusion pathway and stability. These different characteristics make them a good alternative to conventional chromatographic methods and allowing their potential use in separation technology. In the present study, two sets of poly(2-hydroxyethyl methacrylate) (PHEMA) based beads were prepared and functionalized with Reactive Red 120 (RR) and Reactive Green HE 4BD (RG) dyes, and then embedded into supermacroporous cryogels. The morphology, physical and chemical features of the prepared bead embedded composite cryogel discs (CCDs) were performed by scanning electron microscopy (SEM), swelling test, elemental analysis and Fourier transform infrared spectroscopy (FTIR). The results showed that the embedded composite cryogel discs have a specific surface area of 192.0 m2/g with maximum adsorption capacity of HIgG 239.8 mg/g for the RR functionalized CCD and 170 mg/g for RG functionalized CCD columns, both at pH 6.2. - Highlights: • Dye attached composite cryogel discs were prepared to separate HIgG subclasses. • Composite cryogels characterized by swelling, FTIR, SEM and elemental analysis. • Reactive Green HE 4B and Reactive Red 120 dyes were used as the affinity ligand. • HIgG and subclasses were separate from both aqueous solution and human plasma

  10. Method for modeling transport of particles in realistic porous networks: application to the computation of NMR flow propagators.

    Science.gov (United States)

    Picard, Guillemette; Frey, Kurt

    2007-06-01

    We model the transport of particles present in a fluid steadily flowing through a porous medium. The porous medium is described by a representative three-dimensional network. The particles are subjected to advection by the flow and to thermal diffusion. We propose to calculate their trajectories with the continuous time random walk framework. This enables us to efficiently sample disordered networks with realistic topology. The method proposed in this paper is general and can be adapted to model dispersion of tracers. It is applied here to simulate the measurement of the flow propagator [Formula: see text] which is defined as the ensemble density distribution of tracer displacements [Formula: see text], in a given time interval delta t. It can be extracted from pulsed magnetic field gradient spin echo NMR experiments carried out on porous media while fluid is flowing. Preliminary numerical results show good qualitative agreement with experiments. PMID:17677361

  11. Debris flow hazard assessment by integrated modeling of landslide triggering and propagation: application to the Messina Province, Italy

    Science.gov (United States)

    Stancanelli, L. M.; Peres, D. J.; Cavallaro, L.; Cancelliere, A.; Foti, E.

    2014-12-01

    During the last decades an increase of debris flow catastrophic events has been recorded along the Italian territory, mainly due to the increment of settlements and human activities in mountain areas. Considering the large extent of debris flow prone areas, non structural protection strategies should be preferably implemented because of economic constrains associated with structural mitigation measures. In such a framework hazard assessment methodologies play a key role representing useful tools for the development of emergency management policies. The aim of the present study is to apply an integrated debris flow hazard assessment methodology, where rainfall probabilistic analysis and physically-based landslide triggering and propagation models are combined. In particular, the probabilistic rainfall analysis provides the forcing scenarios of different return periods, which are then used as input to a model based on combination of the USGS TRIGRS and the FLO-2D codes. The TRIGRS model (Baum et al., 2008; 2010), developed for analyzing shallow landslide triggering is based on an analytical solution of linearized forms of the Richards' infiltration equation and an infinite-slope stability calculation to estimate the timing and locations of slope failures, while the FLO-2D (O'Brien 1986) is a two-dimensional finite difference model that simulates debris flow propagation following a mono-phase approach, based on empirical quadratic rheological relation developed by O'Brien and Julien (1985). Various aspects of the combination of the models are analyzed, giving a particular focus on the possible variations of triggered amounts compatible with a given return period. The methodology is applied to the case study area of the Messina Province in Italy, which has been recently struck by severe events, as the one of the 1st October 2009 which hit the Giampilieri Village causing 37 fatalities. Results are analyzed to assess the potential hazard that may affect the densely

  12. Representations of affine Hecke algebras

    CERN Document Server

    Xi, Nanhua

    1994-01-01

    Kazhdan and Lusztig classified the simple modules of an affine Hecke algebra Hq (q E C*) provided that q is not a root of 1 (Invent. Math. 1987). Ginzburg had some very interesting work on affine Hecke algebras. Combining these results simple Hq-modules can be classified provided that the order of q is not too small. These Lecture Notes of N. Xi show that the classification of simple Hq-modules is essentially different from general cases when q is a root of 1 of certain orders. In addition the based rings of affine Weyl groups are shown to be of interest in understanding irreducible representations of affine Hecke algebras. Basic knowledge of abstract algebra is enough to read one third of the book. Some knowledge of K-theory, algebraic group, and Kazhdan-Lusztig cell of Cexeter group is useful for the rest

  13. Artificial Affinity Proteins as Ligands of Immunoglobulins

    Directory of Open Access Journals (Sweden)

    Barbara Mouratou

    2015-01-01

    Full Text Available A number of natural proteins are known to have affinity and specificity for immunoglobulins. Some of them are widely used as reagents for detection or capture applications, such as Protein G and Protein A. However, these natural proteins have a defined spectrum of recognition that may not fit specific needs. With the development of combinatorial protein engineering and selection techniques, it has become possible to design artificial affinity proteins with the desired properties. These proteins, termed alternative scaffold proteins, are most often chosen for their stability, ease of engineering and cost-efficient recombinant production in bacteria. In this review, we focus on alternative scaffold proteins for which immunoglobulin binders have been identified and characterized.

  14. Affine toric SL(2)-embeddings

    International Nuclear Information System (INIS)

    In the theory of affine SL(2)-embeddings, which was constructed in 1973 by Popov, a locally transitive action of the group SL(2) on a normal affine three-dimensional variety X is determined by a pair (p/q,r), where 0GV//T-hat. In the substantiation of this result a key role is played by Cox's construction in toric geometry. Bibliography: 12 titles

  15. Propagation of acoustic waves in two waveguides coupled by perforations. II. Application to periodic lattices of finite length

    CERN Document Server

    Pachebat, Marc

    2016-01-01

    The paper deals with the generic problem of two waveguides coupled by perforations, which can be perforated tube mufflers without or with partitions, possibly with absorbing materials. Other examples are ducts with branched resonators of honeycomb cavities , which can be coupled or not, and splitter silencers. Assuming low frequencies, only one mode is considered in each guide. The propagation in the two waveguides can be very different, thanks e.g. to the presence of constrictions. The model is a discrete, periodic one, based upon 4th-order impedance matrices and their diagonalization. All the calculation is analytical, thanks to the partition of the matrices in 2nd-order matrices, and allows the treatment of a very wide types of problems. Several aspects are investigated: the local or non-local character of the reaction of one guide to the other; the definition of a coupling coefficient; the effect of finite size when a lattice with n cells in inserted into an infinite guide; the relationship between the In...

  16. The Application of a Massively Parallel Computer to the Simulation of Electrical Wave Propagation Phenomena in the Heart Muscle Using Simplified Models

    Science.gov (United States)

    Karpoukhin, Mikhii G.; Kogan, Boris Y.; Karplus, Walter J.

    1995-01-01

    The simulation of heart arrhythmia and fibrillation are very important and challenging tasks. The solution of these problems using sophisticated mathematical models is beyond the capabilities of modern super computers. To overcome these difficulties it is proposed to break the whole simulation problem into two tightly coupled stages: generation of the action potential using sophisticated models. and propagation of the action potential using simplified models. The well known simplified models are compared and modified to bring the rate of depolarization and action potential duration restitution closer to reality. The modified method of lines is used to parallelize the computational process. The conditions for the appearance of 2D spiral waves after the application of a premature beat and the subsequent traveling of the spiral wave inside the simulated tissue are studied.

  17. The application of back-propagation neural network to automatic picking seismic arrivals from single-component recordings

    Science.gov (United States)

    Dai, Hengchang; MacBeth, Colin

    1997-07-01

    An automatic approach is developed to pick P and S arrivals from single component (1-C) recordings of local earthquake data. In this approach a back propagation neural network (BPNN) accepts a normalized segment (window of 40 samples) of absolute amplitudes from the 1-C recordings as its input pattern, calculating two output values between 0 and 1. The outputs (0,1) or (1,0) correspond to the presence of an arrival or background noise within a moving window. The two outputs form a time series. The P and S arrivals are then retrieved from this series by using a threshold and a local maximum rule. The BPNN is trained by only 10 pairs of P arrivals and background noise segments from the vertical component (V-C) recordings. It can also successfully pick seismic arrivals from the horizontal components (E-W and N-S). Its performance is different for each of the three components due to strong effects of ray path and source position on the seismic waveforms. For the data from two stations of TDP3 seismic network, the success rates are 93%, 89%, and 83% for P arrivals and 75%, 91%, and 87% for S arrivals from the V-C, E-W, and N-S recordings, respectively. The accuracy of the onset times picked from each individual 1-C recording is similar. Adding a constraint on the error to be 10 ms (one sample increment), 66%, 59% and 63% of the P arrivals and 53%, 61%, and 58% of the S arrivals are picked from the V-C, E-W and N-S recordings respectively. Its performance is lower than a similar three-component picking approach but higher than other 1-C picking methods.

  18. E-commerce Propagation in The Middle East Economies: an Application of a Revised Technology Acceptance Model

    Directory of Open Access Journals (Sweden)

    David Saloman

    2013-09-01

    Full Text Available E-commerce is the technology of conducting commercial transactions via electronic media. The Internet has provided this media to the extent that commerce is being increasingly made through it. However, another side of commerce, which included the (heavy lifting of physical goods are still traversing the distribution channels and employing the traditional transportation infrastructure with varying efficiency and cost. This paper examines the employment and adoption of this technology within the Middle East businesses, and what are the barriers that hinder this adoption. The famous Technology Acceptance Model, TAM is implemented with some variations to identify the difficulties associated with implementing e-business models through a survey of key stakeholders in this industry, namely procurement professional and logistics managers. One hundred forty five participants filled the survey questionnaire aimed at measuring their responses to perceived usefulness (PU, perceived ease of use (PEOU, attitudes towards usage (ATU and behavioral intention to use (BIU the e-business system The results shows that the main factors holding the propagation of e-commerce in these countries, and in spite of growing interests and belief in implementing e-commerce, are related to the inertia of the legacy operating systems, the lack of compatible infrastructure, the security of information, and the level of business ethics. A conceptual mathematical probability model is developed to estimate a new TAM as an MTAM where the acceptance is computed as an average probability of six interaction factors. Several conclusions were arrived at including the need for the development and installation of a legal framework for safeguarding against abuse and illegal schemes of defrauding consumers.

  19. A MEMS Dielectric Affinity Glucose Biosensor.

    Science.gov (United States)

    Huang, Xian; Li, Siqi; Davis, Erin; Li, Dachao; Wang, Qian; Lin, Qiao

    2013-06-20

    Continuous glucose monitoring (CGM) sensors based on affinity detection are desirable for long-term and stable glucose management. However, most affinity sensors contain mechanical moving structures and complex design in sensor actuation and signal readout, limiting their reliability in subcutaneously implantable glucose detection. We have previously demonstrated a proof-of-concept dielectric glucose sensor that measured pre-mixed glucose-sensitive polymer solutions at various glucose concentrations. This sensor features simplicity in sensor design, and possesses high specificity and accuracy in glucose detection. However, lack of glucose diffusion passage, this device is unable to fulfill real-time in-vivo monitoring. As a major improvement to this device, we present in this paper a fully implantable MEMS dielectric affinity glucose biosensor that contains a perforated electrode embedded in a suspended diaphragm. This capacitive-based sensor contains no moving parts, and enables glucose diffusion and real-time monitoring. The experimental results indicate that this sensor can detect glucose solutions at physiological concentrations and possesses good reversibility and reliability. This sensor has a time constant to glucose concentration change at approximately 3 min, which is comparable to commercial systems. The sensor has potential applications in fully implantable CGM that require excellent long-term stability and reliability. PMID:24511215

  20. Simultaneous purification and refolding of proteins by affinity precipitation and macro (affinity ligand)-facilitated three phase partitioning (MLFTPP).

    Science.gov (United States)

    Roy, Ipsita; Mondal, Kalyani; Gupta, Munishwar N

    2014-01-01

    This chapter describes two simple interrelated non-chromatographic methods of protein purification. In the first method, called affinity precipitation, inherent affinity of reversibly soluble-insoluble polymers (also called stimuli-sensitive or smart polymers) is exploited to form an affinity complex in free solution with target protein. The affinity complex is precipitated by a suitable change in the medium. The desired protein is dissociated from the smart polymer. In the second method called macro (affinity ligand)-facilitated three phase partitioning (MLFTPP), the affinity complex is precipitated at an interface between upper t-butanol-rich phase and lower aqueous phase. These three phases are achieved by adding appropriate amounts of ammonium sulfate and t-butanol to the initial crude extract. In the first protocol, sequential MLFTPP is used with two different smart polymers to purify pectinase and cellulase from a single crude preparation. The second protocol illustrates the application of the affinity precipitation in simultaneous purification and refolding of a urea-denatured xylanase. PMID:24648072

  1. Belief propagation for graph partitioning

    International Nuclear Information System (INIS)

    We study the belief-propagation algorithm for the graph bi-partitioning problem, i.e. the ground state of the ferromagnetic Ising model at a fixed magnetization. Application of a message passing scheme to a model with a fixed global parameter is not banal and we show that the magnetization can in fact be fixed in a local way within the belief-propagation equations. Our method provides the full phase diagram of the bi-partitioning problem on random graphs, as well as an efficient heuristic solver that we anticipate to be useful in a wide range of application of the partitioning problem.

  2. Smooth surfaces from bilinear patches: Discrete affine minimal surfaces

    KAUST Repository

    Käferböck, Florian

    2013-06-01

    Motivated by applications in freeform architecture, we study surfaces which are composed of smoothly joined bilinear patches. These surfaces turn out to be discrete versions of negatively curved affine minimal surfaces and share many properties with their classical smooth counterparts. We present computational design approaches and study special cases which should be interesting for the architectural application. 2013 Elsevier B.V.

  3. Identification of acoustic wave propagation in a duct line and its application to detection of impact source location based on signal processing

    Energy Technology Data Exchange (ETDEWEB)

    Shin, Yong Woo; Kim, Min Soo; Lee, Sang Kwon [Inha University, Seoul (Korea, Republic of)

    2010-12-15

    For the detection of the impact location in a pipeline system, the correlation method has been the conventional method. For the application of the correlation method, the diameter of a duct should be small so that the acoustic wave inside the duct can propagate with nondispersive characteristics, in the form of, for example, a plane wave. This correlation method calculates the cross-correlation between acoustic waves measured at two acceleration sensors attached to a buried duct. It also gives information about the arrival time delay of an acoustic wave between two sensors. These arrival time delays are used for the estimation of the impact location. However, when the diameter of the duct is large, the acoustic waves inside the duct propagate with dispersive characteristics owing to the reflection of the acoustic wave off of the wall of the duct. This dispersive characteristic is related to the acoustic modes inside a duct. Therefore, the correlation method does not work correctly for the detection of the impact location. This paper proposes new methods of accurately measuring the arrival time delay between two sensors attached to duct line system. This method is based on the time-frequency analyses of the short time Fourier transform (STFT) and continuous wavelet transform (CWT). These methods can discriminate direct waves (non-dispersive waves) and reflective waves (dispersive waves) from the measured wave signals through the time-frequency analysis. The direct wave or the reflective wave is used to estimate the arrival time delay. This delay is used for the identification of the impact location. This systematic method can predict the impact location due to the impact forces of construction equipment with more accuracy than the correlation method

  4. Identification of acoustic wave propagation in a duct line and its application to detection of impact source location based on signal processing

    International Nuclear Information System (INIS)

    For the detection of the impact location in a pipeline system, the correlation method has been the conventional method. For the application of the correlation method, the diameter of a duct should be small so that the acoustic wave inside the duct can propagate with nondispersive characteristics, in the form of, for example, a plane wave. This correlation method calculates the cross-correlation between acoustic waves measured at two acceleration sensors attached to a buried duct. It also gives information about the arrival time delay of an acoustic wave between two sensors. These arrival time delays are used for the estimation of the impact location. However, when the diameter of the duct is large, the acoustic waves inside the duct propagate with dispersive characteristics owing to the reflection of the acoustic wave off of the wall of the duct. This dispersive characteristic is related to the acoustic modes inside a duct. Therefore, the correlation method does not work correctly for the detection of the impact location. This paper proposes new methods of accurately measuring the arrival time delay between two sensors attached to duct line system. This method is based on the time-frequency analyses of the short time Fourier transform (STFT) and continuous wavelet transform (CWT). These methods can discriminate direct waves (non-dispersive waves) and reflective waves (dispersive waves) from the measured wave signals through the time-frequency analysis. The direct wave or the reflective wave is used to estimate the arrival time delay. This delay is used for the identification of the impact location. This systematic method can predict the impact location due to the impact forces of construction equipment with more accuracy than the correlation method

  5. Affinity and Efficacy of Copper Following an Algicide Exposure: Application of the Critical Burden Concept for Lyngbya wollei Control in Lay Lake, AL

    Science.gov (United States)

    Bishop, West M.; Willis, Ben E.; Horton, C. Todd

    2015-04-01

    Accurate predictions of nuisance algae responses to algicide exposures are needed to guide management decisions. Copper sorption and responses of Lyngbya wollei (Farlow ex Gomont) Speziale and Dyck were measured in the laboratory and two areas in Lay Lake (AL, USA) to treatments of Captain® XTR (SePRO Corporation; chelated copper algicide) and a sequential treatment of GreenClean® Liquid (BioSafe Systems, LLC; peroxygen algicide) combined with Hydrothol® 191 (United Phosphorus, Inc.; endothall algicide) followed by Captain XTR. Measured filament viability in laboratory exposures predicted Captain XTR alone could control L. wollei in Lay Lake, with 2 mg Cu/g algae EC75. This produced a targeted field treatment of 9.7 kg Cu/ha which was divided into three applications of 0.3 mg Cu/L as Captain XTR in the treatment areas. Laboratory and field experiments indicated treatments of Captain XTR alone and the combination treatment resulted in comparable copper sorption and responses of L. wollei. Copper adsorbed greater to L. wollei in laboratory experiments than in the treated areas of Lay Lake with comparable exposures (2 mg Cu/g L. wollei). However, responses and infused copper were similar and correlated in laboratory experiments and treated areas of Lay Lake indicating infused copper is critical for governing toxicity. Laboratory exposures as mg Cu/g algae accurately predicted the necessary algicide exposure required to attain the critical burden of infused copper and elicit desired responses of L. wollei in treated areas of Lay Lake.

  6. A novel contra propagating ultrasonic flowmeter using glad buffer rods for high temperature measurement. Application to the oil and gas industries

    Energy Technology Data Exchange (ETDEWEB)

    Franca, Demartonne R. [Brasilia Univ., DF (Brazil). Dept. de Engenharia Eletrica; Cheng-Kuei Jen; Yuu Ono [National Research Council (NRC), Quebec (Canada). Industrial Materials Institute

    2005-07-01

    Ultrasonic techniques are attractive for process monitoring and control because they are non-intrusive, robust and inexpensive. Two common concerns limiting the high temperature performance of conventional ultrasonic systems for flow measurement are related to transducers and couplants. A suitable approach to overcoming this drawback is to insert a thermal isolating buffer rod with good ultrasonic performance (e.g., high signal-to-noise ratio). This requirement is important because, a priori, the noises generated in the buffer rod may bury the desired signals, so that no meaningful information is extracted. Besides protecting the ultrasonic transducers from overheating in applications such as high temperature flow measurements, buffer rods are also a solution for the couplant between the probe and tested sample, since their probing end can be directly wetted by fluids. Here, we propose clad buffer rods driven by shear transducers as the main building block of contra propagating ultrasonic flowmeters for high temperature application. It is demonstrated that the superior signal-to-noise ratio exhibit by clad buffer rods compared to the reported non-clad counterparts improve precision in transit-time measurement, leading to more accurate flow speed determination. In addition, it is shown that clad buffer rods generate specific ultrasonic signals for temperature calibration of flowmeters, allowing temperature variation while still measuring accurately the flow speed. These results are of interest for the oil and gas industries. (author)

  7. Fracture mechanical modeling of brittle crack propagation and arrest of steel. 3. Application to duplex-type test; Kozai no zeisei kiretsu denpa teisi no rikigaku model. 3. Konseigata shiken eno tekiyo

    Energy Technology Data Exchange (ETDEWEB)

    Aihara, S.; Tsuchida, Y. [Nippon Steel Corp., Tokyo (Japan); Machida, S.; Yoshinari, H. [The University of Tokyo, Tokyo (Japan). Faculty of Engineering

    1996-12-31

    A proposal was made previously on a model of brittle crack propagation and arrest that considers the effect of crack opening suppression by using unbroken ligaments generated on steel plate surface and the effect that cracks precede in the central part of the plate thickness, based on a local limit stress theory for brittleness fracture. This paper discusses applicability of this model to a mixed type test, and elucidates causes for difference in the arrest tenacity of both types in a double tensile test of the standard size. The brittle crack propagation and arrest model based on the local limit stress theory was found applicable to a simulation of the mixed type test. Experimental crack propagation speed history and behavior of the arrest were reproduced nearly completely by using this model. When load stress is increased, the arrests in the mixed type test may be classified into arrests of both inside the steel plate and near the surface, cracks in the former position or arrest in the latter position, and rush of cracks into both positions. Furthermore, at higher stresses, the propagation speed drops once after cracks rushed into the test plate, but turns to a rise, leading to propagation and piercing. 8 refs., 15 figs., 3 tabs.

  8. Radio frequency propagation made easy

    CERN Document Server

    Faruque, Saleh

    2015-01-01

    This book introduces Radio Frequency Propagation to a broad audience.  The author blends theory and practice to bring readers up-to-date in key concepts, underlying principles and practical applications of wireless communications.  The presentation is designed to be easily accessible, minimizing mathematics and maximizing visuals.

  9. Affinity Solvents for Intensified Organics Extraction: Development Challenges and Prospects

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    In most organics extraction processes, the commonly used solvents employ solely physical interactions. Therefore, for the recovery and purification of products from complex mixtures, the selectivity and/or capacity of classical solvents towards the desired solutes is usually insufficient, enforcing the need for complex and thus expensive separation schemes. Significant simplification and cost-reduction can be achieved when affinity solvents would be available that are able to recognize the solutes of interest by their molecular structure. The main development challenges to establish such affinity solvents are: Selection and incorporation of molecular recognition and complexation capabilities; Evaluation of extraction capabilities; Efficient recovery and recycling of the affinity solvents; Implementation in industrial extraction equipment. This paper presents how these development challenges are addressed at the University of Twente, going all the way from affinity solvent design and synthesis, via high throughput screening and characterization up to pilot plant evaluation. Essential in the successful development of affinity solvents are structural cooperations with molecular chemists and custom synthesis companies for their design and synthesis. The various aspects are illustrated by several examples where newly developed environmentally benign affinity solvents appeared able to create major breakthroughs. The applications addressed involve oxygenates, sugars, and pharmaceutical ingredients, such as optical isomers and biomolecules.

  10. Affine density in wavelet analysis

    CERN Document Server

    Kutyniok, Gitta

    2007-01-01

    In wavelet analysis, irregular wavelet frames have recently come to the forefront of current research due to questions concerning the robustness and stability of wavelet algorithms. A major difficulty in the study of these systems is the highly sensitive interplay between geometric properties of a sequence of time-scale indices and frame properties of the associated wavelet systems. This volume provides the first thorough and comprehensive treatment of irregular wavelet frames by introducing and employing a new notion of affine density as a highly effective tool for examining the geometry of sequences of time-scale indices. Many of the results are new and published for the first time. Topics include: qualitative and quantitative density conditions for existence of irregular wavelet frames, non-existence of irregular co-affine frames, the Nyquist phenomenon for wavelet systems, and approximation properties of irregular wavelet frames.

  11. Protein isolation using affinity chromatography

    OpenAIRE

    Besselink, T.

    2012-01-01

    Many product or even waste streams in the food industry contain components that may have potential for e.g. functional foods. These streams are typically large in volume and the components of interest are only present at low concentrations. A robust and highly selective separation process should be developed for efficient isolation of the components. Affinity chromatography is such a selective method. Ligands immobilized to a stationary phase (e.g., a resin or membrane) are used to bind the c...

  12. Inhomogeneous self-affine carpets

    OpenAIRE

    Fraser, Jonathan M.

    2013-01-01

    We investigate the dimension theory of inhomogeneous self-affine carpets. Through the work of Olsen, Snigireva and Fraser, the dimension theory of inhomogeneous self-similar sets is now relatively well-understood, however, almost no progress has been made concerning more general non-conformal inhomogeneous attractors. If a dimension is countably stable, then the results are immediate and so we focus on the upper and lower box dimensions and compute these explicitly for large classes of inhomo...

  13. Propagation testing multi-cell batteries.

    Energy Technology Data Exchange (ETDEWEB)

    Orendorff, Christopher J.; Lamb, Joshua; Steele, Leigh Anna Marie; Spangler, Scott Wilmer

    2014-10-01

    Propagation of single point or single cell failures in multi-cell batteries is a significant concern as batteries increase in scale for a variety of civilian and military applications. This report describes the procedure for testing failure propagation along with some representative test results to highlight the potential outcomes for different battery types and designs.

  14. Alternative affinity tools: more attractive than antibodies?

    NARCIS (Netherlands)

    Ruigrok, V.J.B.; Levisson, M.; Eppink, M.H.M.; Smidt, H.; Oost, van der J.

    2011-01-01

    Antibodies are the most successful affinity tools used today, in both fundamental and applied research (diagnostics, purification and therapeutics). Nonetheless, antibodies do have their limitations, including high production costs and low stability. Alternative affinity tools based on nucleic acids

  15. Spectral affinity in protein networks

    Directory of Open Access Journals (Sweden)

    Teng Shang-Hua

    2009-11-01

    Full Text Available Abstract Background Protein-protein interaction (PPI networks enable us to better understand the functional organization of the proteome. We can learn a lot about a particular protein by querying its neighborhood in a PPI network to find proteins with similar function. A spectral approach that considers random walks between nodes of interest is particularly useful in evaluating closeness in PPI networks. Spectral measures of closeness are more robust to noise in the data and are more precise than simpler methods based on edge density and shortest path length. Results We develop a novel affinity measure for pairs of proteins in PPI networks, which uses personalized PageRank, a random walk based method used in context-sensitive search on the Web. Our measure of closeness, which we call PageRank Affinity, is proportional to the number of times the smaller-degree protein is visited in a random walk that restarts at the larger-degree protein. PageRank considers paths of all lengths in a network, therefore PageRank Affinity is a precise measure that is robust to noise in the data. PageRank Affinity is also provably related to cluster co-membership, making it a meaningful measure. In our experiments on protein networks we find that our measure is better at predicting co-complex membership and finding functionally related proteins than other commonly used measures of closeness. Moreover, our experiments indicate that PageRank Affinity is very resilient to noise in the network. In addition, based on our method we build a tool that quickly finds nodes closest to a queried protein in any protein network, and easily scales to much larger biological networks. Conclusion We define a meaningful way to assess the closeness of two proteins in a PPI network, and show that our closeness measure is more biologically significant than other commonly used methods. We also develop a tool, accessible at http://xialab.bu.edu/resources/pnns, that allows the user to

  16. Modification of tropospheric propagation conditions

    Science.gov (United States)

    Jeske, H.

    1990-10-01

    The propagation mechanisms of ultra-short radio waves and microwaves are governed by the composition of the troposphere and their space-time structure of the refractive index field. Useful effects are obtained by chaff clouds concerning communication channels, masking of targets or meteorological research. A wide field of posiibilities seems to be within the scope of weather modification experiments. But due to the huge variability of cloud and rain parameters only minor propagation changes are to be expected. A successful application of remotely determining atmospheric temperature profiles is the modulation of the atmospheric refractive index field by sound waves and tracking the acoustic wave fronts by a Doppler radar (Radio Acoustic Sounding System). Oil and alga slicks on water surfaces may change the reflection/scattering and emission properties for radar waves. They also suppress evaporation which may influence the development of tropical storms but just so evaporation duct propagation of microwaves.

  17. Manifolds with integrable affine shape operator

    Directory of Open Access Journals (Sweden)

    Daniel A. Joaquín

    2005-05-01

    Full Text Available This work establishes the conditions for the existence of vector fields with the property that theirs covariant derivative, with respect to the affine normal connection, be the affine shape operatorS in hypersurfaces. Some results are obtained from this property and, in particular, for some kind of affine decomposable hypersurfaces we explicitely get the actual vector fields.

  18. Propagation of SLF/ELF electromagnetic waves

    CERN Document Server

    Pan, Weiyan

    2014-01-01

    This book deals with the SLF/ELF wave propagation, an important branch of electromagnetic theory. The SLF/ELF wave propagation theory is well applied in earthquake electromagnetic radiation, submarine communication, thunderstorm detection, and geophysical prospecting and diagnostics. The propagation of SLF/ELF electromagnetic waves is introduced in various media like the earth-ionospheric waveguide, ionospheric plasma, sea water, earth, and the boundary between two different media or the stratified media. Applications in the earthquake electromagnetic radiation and the submarine communications are also addressed. This book is intended for scientists and engineers in the fields of radio propagation and EM theory and applications. Prof. Pan is a professor at China Research Institute of Radiowave Propagation in Qingdao (China). Dr. Li is a professor at Zhejiang University in Hangzhou (China).

  19. Propagation des ondes élastiques dans les matériaux non linéaires Aperçu des résultats de laboratoire obtenus sur les roches et des applications possibles en géophysique Propagation of Elastic Waves in Nonlinear Materials Survey of Laboratory Results on Rock and Geophysical Applications

    Directory of Open Access Journals (Sweden)

    Rasolofosaon P.

    2006-12-01

    Full Text Available Les roches présentent souvent un comportement élastique nettement non linéaire, entraînant des conséquences importantes sur la propagation des ondes. Cette non-linéarité élastique est surtout causée par les microdéfauts mécaniques ubiquistes (microfissures, joints de grains, macles, etc. dont la rigidité varie sous l'effet de la contrainte. Ce sujet fait l'objet d'études de plus en plus nombreuses. Nous nous proposons de présenter très sommairement les bases théoriques et les résultats expérimentaux permettant d'avoir un ordre de grandeur des effets caractéristiques observés dans les roches afin de pouvoir proposer une approche critique des possibilités d'applications en géophysique. Deux disciplines se sont développées en parallèle à partir du même principe physique et avec des formalismes très proches : - L'acousto-élasticité étudie l'effet des précontraintes statiques sur les vitesses de propagation des ondes élastiques. On dispose d'un formalisme mécanique élaboré permettant de relier quantitativement variation de contrainte et variation de vitesse élastique (par exemple pour ce qui concerne l'anisotropie acoustique induite par un état de contrainte et d'une méthode expérimentale de mesure des coefficients de non-linéarité. - L'acoustique non linéaire s'intéresse aux conséquences de la variation des modules élastiques au passage d'une onde qui ne peut plus être considérée comme une petite perturbation, mais qui induit localement des modifications mesurables du milieu de propagation ; modifications entraînant l'apparition de phénomènes inconnus en acoustique linéaire tels que la génération d'harmoniques et l'interaction onde-onde. Les applications à la sismique pétrolière semblent fort lointaines puisque, avec les méthodes classiques de surface ou de puits, il y a peu d'espoir de réussir à faire propager jusqu'aux couches profondes des ondes dont l'amplitude dépasserait le seuil de

  20. Topology optimization of wave-propagation problems

    DEFF Research Database (Denmark)

    Jensen, Jakob Søndergaard; Sigmund, Ole

    Topology optimization is demonstrated as a useful tool for systematic design of wave-propagation problems. We illustrate the applicability of the method for optical, acoustic and elastic devices and structures....

  1. Combinatorial topology of three-dimensional self-affine tiles

    CERN Document Server

    Bandt, Christoph

    2010-01-01

    We develop tools to study the topology and geometry of self-affine fractals in dimension three and higher. We use the self-affine structure and obtain rather detailed information about the connectedness of interior and boundary sets, and on the dimensions and intersections of boundary sets. As an application, we describe in algebraic terms the polyhedral structure of the six fractal three-dimensional twindragons. Only two of them can be homeomorphic to a ball but even these have faces which are not homeomorphic to a disk.

  2. Affine Moment Invariants Generated by Automated Solution of the Equations

    Czech Academy of Sciences Publication Activity Database

    Suk, Tomáš; Flusser, Jan

    Los Alamitos : IEEE Press, 2008, s. 3270-3273. ISBN 978-1-4244-2174-9. [19th International Conference on Pattern Recognition. Tampa (US), 07.12.2008-11.12.2008] R&D Projects: GA ČR GA102/08/1593 Institutional research plan: CEZ:AV0Z10750506 Keywords : affine moment invariants * object recognition * Cayley-Aronhold differential equation Subject RIV: JD - Computer Applications, Robotics http://library.utia.cas.cz/separaty/2008/ZOI/suk-affine moment invariants generated by automated solution of the equations. pdf

  3. Gravitational Goldstone fields from affine gauge theory

    CERN Document Server

    Tresguerres, R

    2000-01-01

    In order to facilitate the application of standard renormalization techniques, gravitation should be decribed, if possible, in pure connection formalism, as a Yang-Mills theory of a certain spacetime group, say the Poincare or the affine group. This embodies the translational as well as the linear connection. However, the coframe is not the standard Yang-Mills type gauge field of the translations, since it lacks the inhomogeneous gradient term in the gauge transformations. By explicitly restoring the "hidden" piece responsible for this behavior within the framework of nonlinear realizations, the usual geometrical interpretation of the dynamical theory becomes possible, and in addition one can avoid the metric or coframe degeneracy which would otherwise interfere with the integrations within the path integral. We claim that nonlinear realizations provide a general mathematical scheme clarifying the foundations of gauge theories of spacetime symmetries. When applied to construct the Yang-Mills theory of the aff...

  4. Enhancing Community Detection By Affinity-based Edge Weighting Scheme

    Energy Technology Data Exchange (ETDEWEB)

    Yoo, Andy [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Sanders, Geoffrey [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Henson, Van [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Vassilevski, Panayot [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2015-10-05

    Community detection refers to an important graph analytics problem of finding a set of densely-connected subgraphs in a graph and has gained a great deal of interest recently. The performance of current community detection algorithms is limited by an inherent constraint of unweighted graphs that offer very little information on their internal community structures. In this paper, we propose a new scheme to address this issue that weights the edges in a given graph based on recently proposed vertex affinity. The vertex affinity quantifies the proximity between two vertices in terms of their clustering strength, and therefore, it is ideal for graph analytics applications such as community detection. We also demonstrate that the affinity-based edge weighting scheme can improve the performance of community detection algorithms significantly.

  5. Rational self-affine tiles

    CERN Document Server

    Steiner, Wolfgang

    2012-01-01

    An integral self-affine tile is the solution of a set equation $\\mathbf{A} \\mathcal{T} = \\bigcup_{d \\in \\mathcal{D}} (\\mathcal{T} + d)$, where $\\mathbf{A}$ is an $n \\times n$ integer matrix and $\\mathcal{D}$ is a finite subset of $\\mathbb{Z}^n$. In the recent decades, these objects and the induced tilings have been studied systematically. We extend this theory to matrices $\\mathbf{A} \\in \\mathbb{Q}^{n \\times n}$. We define rational self-affine tiles as compact subsets of the open subring $\\mathbb{R}^n\\times \\prod_\\mathfrak{p} K_\\mathfrak{p}$ of the ad\\'ele ring $\\mathbb{A}_K$, where the factors of the (finite) product are certain $\\mathfrak{p}$-adic completions of a number field $K$ that is defined in terms of the characteristic polynomial of $\\mathbf{A}$. Employing methods from classical algebraic number theory, Fourier analysis in number fields, and results on zero sets of transfer operators, we establish a general tiling theorem for these tiles. We also associate a second kind of tiles with a rational matr...

  6. The affine quantum gravity programme

    International Nuclear Information System (INIS)

    The central principle of affine quantum gravity is securing and maintaining the strict positivity of the matrix { g-hat ab(x)} composed of the spatial components of the local metric operator. On spectral grounds, canonical commutation relations are incompatible with this principle, and they must be replaced by noncanonical, affine commutation relations. Due to the partial second-class nature of the quantum gravitational constraints, it is advantageous to use the recently developed projection operator method, which treats all quantum constraints on an equal footing. Using this method, enforcement of regularized versions of the gravitational operator constraints is formulated quite naturally by means of a novel and relatively well-defined functional integral involving only the same set of variables that appears in the usual classical formulation. It is anticipated that skills and insight to study this formulation can be developed by studying special, reduced-variable models that still retain some basic characteristics of gravity, specifically a partial second-class constraint operator structure. Although perturbatively nonrenormalizable, gravity may possibly be understood nonperturbatively from a hard-core perspective that has proved valuable for specialized models. Finally, developing a procedure to pass to the genuine physical Hilbert space involves several interconnected steps that require careful coordination

  7. A recurrence relation for characters of highest weight integrable modules for affine Lie algebras

    OpenAIRE

    Cook, William J; Li, Haisheng; Misra, Kailash C.

    2005-01-01

    Using certain results for the vertex operator algebras associated with affine Lie algebras we obtain recurrence relations for the characters of integrable highest weight irreducible modules for an affine Lie algebra. As an application we show that in the simply-laced level 1 case, these recurrence relations give the known characters, whose principal specializations naturally give rise to some multisum Macdonald identities.

  8. Propagator of spinless tachyons

    International Nuclear Information System (INIS)

    The possibility of formulating a tachyon propagator is considered. Both nonrelativistic- and relativistic-tachyon propagators are derived. The presented theory is based on the reciprocity principle according to which the roles of space and time are interchanged. The roles of tachyon energy and momentum are also interchanged. The relativistic-tachyon propagator reflects the fact that positive- and negative-momentum states are separated by a gap which remains unaltered in all Lorentz frames. The relativistic-tachyon propagator includes the momentum sign function instead of the energy sign function as compared with the bradyon propagator. For these reasons, the relativistic-tachyon propagator leads to a solution of the tachyon Klein-Gordon equation which is Lorentz invariant. (author)

  9. Propagator for finite range potentials

    International Nuclear Information System (INIS)

    The Schroedinger equation in integral form is applied to the one-dimensional scattering problem in the case of a general finite range, nonsingular potential. A simple expression for the Laplace transform of the transmission propagator is obtained in terms of the associated Fredholm determinant, by means of matrix methods; the particular form of the kernel and the peculiar aspects of the transmission problem play an important role. The application to an array of delta potentials is shown

  10. Towards "Propagation = Logic + Control"

    OpenAIRE

    Brand, Sebastian; Yap, Roland H. C.

    2006-01-01

    Constraint propagation algorithms implement logical inference. For efficiency, it is essential to control whether and in what order basic inference steps are taken. We provide a high-level framework that clearly differentiates between information needed for controlling propagation versus that needed for the logical semantics of complex constraints composed from primitive ones. We argue for the appropriateness of our controlled propagation framework by showing that it c...

  11. The contact-temperature ignition (CTI) criteria for propagating chemical reactions including the effect of moisture and application to Hanford waste

    International Nuclear Information System (INIS)

    To assure the continued absence of uncontrolled condensed-phase chemical reactions in connection with the Hanford waste materials, efforts have been underway including both theoretical and experimental investigations to clarify the requirements for such reactions. This document defines the differences and requirements for homogeneous runaway and propagating chemical reactions incuding a discussion of general contact-temperature ignition (CTI) condition for propagating reactions that include the effect of moisture. The CTI condition implies that the contact temperature or interface temperature between reacted and unreacted materials must exceed the ignition temperature and is compared to experimental data including both synthetic ferrocyanide and surrogate organic materials. In all cases, the occurrences of ignition accompanied by self-propagating reactions are consistent with the theoretical anticipations of the CTI condition

  12. The contact-temperature ignition (CTI) criteria for propagating chemical reactions including the effect of moisture and application to Hanford waste

    Energy Technology Data Exchange (ETDEWEB)

    Cash, R.J.

    1995-09-27

    To assure the continued absence of uncontrolled condensed-phase chemical reactions in connection with the Hanford waste materials, efforts have been underway including both theoretical and experimental investigations to clarify the requirements for such reactions. This document defines the differences and requirements for homogeneous runaway and propagating chemical reactions incuding a discussion of general contact-temperature ignition (CTI) condition for propagating reactions that include the effect of moisture. The CTI condition implies that the contact temperature or interface temperature between reacted and unreacted materials must exceed the ignition temperature and is compared to experimental data including both synthetic ferrocyanide and surrogate organic materials. In all cases, the occurrences of ignition accompanied by self-propagating reactions are consistent with the theoretical anticipations of the CTI condition.

  13. A novel EBSD-based finite-element wave propagation model for investigating seismic anisotropy: Application to Finero Peridotite, Ivrea-Verbano Zone, Northern Italy

    Science.gov (United States)

    Zhong, Xin; Frehner, Marcel; Kunze, Karsten; Zappone, Alba

    2014-10-01

    A novel electron backscatter diffraction (EBSD) -based finite-element (FE) wave propagation simulation is presented and applied to investigate seismic anisotropy of peridotite samples. The FE model simulates the dynamic propagation of seismic waves along any chosen direction through representative 2D EBSD sections. The numerical model allows separation of the effects of crystallographic preferred orientation (CPO) and shape preferred orientation (SPO). The obtained seismic velocities with respect to specimen orientation are compared with Voigt-Reuss-Hill estimates and with laboratory measurements. The results of these three independent methods testify that CPO is the dominant factor controlling seismic anisotropy. Fracture fillings and minor minerals like hornblende only influence the seismic anisotropy if their volume proportion is sufficiently large (up to 23%). The SPO influence is minor compared to the other factors. The presented FE model is discussed with regard to its potential in simulating seismic wave propagation using EBSD data representing natural rock petrofabrics.

  14. UWB Propagation through Walls

    Directory of Open Access Journals (Sweden)

    M. Hajek

    2006-04-01

    Full Text Available The propagation of ultra wide band (UWB signals through walls is analyzed. For this propagation studies, it is necessary to consider not only propagation at a single frequency but in the whole band. The UWB radar output signal is formed by both transmitter and antenna. The effects of antenna receiving and transmitting responses for various antenna types (such as small and aperture antennas are studied in the frequency as well as time domain. Moreover, UWB radar output signals can be substantially affected due to electromagnetic wave propagation through walls and multipath effects.

  15. Conformal field theory on affine Lie groups

    International Nuclear Information System (INIS)

    Working directly on affine Lie groups, we construct several new formulations of the WZW model, the gauged WZW model, and the generic affine-Virasoro action. In one formulation each of these conformal field theories (CFTs) is expressed as a one-dimensional mechanical system whose variables are coordinates on the affine Lie group. When written in terms of the affine group element, this formulation exhibits a two-dimensional WZW term. In another formulation each CFT is written as a two-dimensional field theory, with a three- dimensional WZW term, whose fields are coordinates on the affine group. On the basis of these equivalent formulations, we develop a translation dictionary in which the new formulations on the affine Lie group are understood as mode formulations of the conventional formulations on the Lie group. Using this dictionary, we also express each CFT as a three-dimensional field theory on the Lie group with a four-dimensional WZW term. 36 refs

  16. Conformal field theory on affine Lie groups

    Energy Technology Data Exchange (ETDEWEB)

    Clubok, K.S.

    1996-04-01

    Working directly on affine Lie groups, we construct several new formulations of the WZW model, the gauged WZW model, and the generic affine-Virasoro action. In one formulation each of these conformal field theories (CFTs) is expressed as a one-dimensional mechanical system whose variables are coordinates on the affine Lie group. When written in terms of the affine group element, this formulation exhibits a two-dimensional WZW term. In another formulation each CFT is written as a two-dimensional field theory, with a three- dimensional WZW term, whose fields are coordinates on the affine group. On the basis of these equivalent formulations, we develop a translation dictionary in which the new formulations on the affine Lie group are understood as mode formulations of the conventional formulations on the Lie group. Using this dictionary, we also express each CFT as a three-dimensional field theory on the Lie group with a four-dimensional WZW term. 36 refs.

  17. Maximin affinity learning of image segmentation

    CERN Document Server

    Turaga, Srinivas C; Helmstaedter, Moritz; Denk, Winfried; Seung, H Sebastian

    2009-01-01

    Images can be segmented by first using a classifier to predict an affinity graph that reflects the degree to which image pixels must be grouped together and then partitioning the graph to yield a segmentation. Machine learning has been applied to the affinity classifier to produce affinity graphs that are good in the sense of minimizing edge misclassification rates. However, this error measure is only indirectly related to the quality of segmentations produced by ultimately partitioning the affinity graph. We present the first machine learning algorithm for training a classifier to produce affinity graphs that are good in the sense of producing segmentations that directly minimize the Rand index, a well known segmentation performance measure. The Rand index measures segmentation performance by quantifying the classification of the connectivity of image pixel pairs after segmentation. By using the simple graph partitioning algorithm of finding the connected components of the thresholded affinity graph, we are ...

  18. The semiclassical propagator in fermionic Fock space

    CERN Document Server

    Engl, Thomas; Urbina, Juan Diego; Richter, Klaus

    2014-01-01

    We present a rigorous derivation of a semiclassical propagator for anticommuting (fermionic) degrees of freedom, starting from an exact representation in terms of Grassmann variables. As a key feature of our approach the anticommuting variables are integrated out exactly, and an exact path integral representation of the fermionic propagator in terms of commuting variables is constructed. Since our approach is not based on auxiliary (Hubbard-Stratonovich) fields, it surpasses the calculation of fermionic determinants yielding a standard form $\\int {\\cal D}[\\psi,\\psi^{*}] {\\rm e}^{i R[\\psi,\\psi^{*}]}$ with real actions for the propagator. These two features allow us to provide a rigorous definition of the classical limit of interacting fermionic fields and therefore to achieve the long-standing goal of a theoretically sound construction of a semiclassical van Vleck-Gutzwiller propagator in fermionic Fock space. As an application, we use our propagator to investigate how the different universality classes (ortho...

  19. Methods for Improving Aptamer Binding Affinity

    OpenAIRE

    Hijiri Hasegawa; Nasa Savory; Koichi Abe; Kazunori Ikebukuro

    2016-01-01

    Aptamers are single stranded oligonucleotides that bind a wide range of biological targets. Although aptamers can be isolated from pools of random sequence oligonucleotides using affinity-based selection, aptamers with high affinities are not always obtained. Therefore, further refinement of aptamers is required to achieve desired binding affinities. The optimization of primary sequences and stabilization of aptamer conformations are the main approaches to refining the binding properties of a...

  20. Covariant Functional Calculi from the Affine Groups

    OpenAIRE

    Gong, Yafang

    2009-01-01

    Invoking the Clifford-Hermite Wavelets from Clifford analysis, we use the covariances of affine groups to construct a kind of functional calculi for several non-commuting bounded operators. Functional calculi are the intertwining transforms between the representations of affine groups in the space $L^2(\\mathbb R^m)$ and in the space of bounded operators. It turns out that the Weyl calculus is the value of this new functional calculus at the identity of affine groups. Our app...

  1. Multipole solutions in metric-affine gravity

    CERN Document Server

    Socorro, J; Macías, A; Mielke, E W; Socorro, José; Lämmerzahl, Claus; Macías, Alfredo; Mielke, Eckehard W.

    1998-01-01

    Above Planck energies, the spacetime might become non--Riemannian, as it is known fron string theory and inflation. Then geometries arise in which nonmetricity and torsion appear as field strengths, side by side with curvature. By gauging the affine group, a metric affine gauge theory emerges as dynamical framework. Here, by using the harmonic map ansatz, a new class of multipole like solutions in the metric affine gravity theory (MAG) is obtained.

  2. Maximin affinity learning of image segmentation

    OpenAIRE

    Srinivas C Turaga; Briggman, Kevin L; Helmstaedter, Moritz; Denk, Winfried; Seung, H. Sebastian

    2009-01-01

    Images can be segmented by first using a classifier to predict an affinity graph that reflects the degree to which image pixels must be grouped together and then partitioning the graph to yield a segmentation. Machine learning has been applied to the affinity classifier to produce affinity graphs that are good in the sense of minimizing edge misclassification rates. However, this error measure is only indirectly related to the quality of segmentations produced by ultimately partitioning the a...

  3. Discrete Affine Minimal Surfaces with Indefinite Metric

    OpenAIRE

    Craizer, Marcos; Anciaux, Henri; Lewiner, Thomas

    2008-01-01

    Inspired by the Weierstrass representation of smooth affine minimal surfaces with indefinite metric, we propose a constructive process producing a large class of discrete surfaces that we call discrete affine minimal surfaces. We show that they are critical points of an affine area functional defined on the space of quadrangular discrete surfaces. The construction makes use of asymptotic coordinates and allows defining the discrete analogs of some differential geometric objects, such as the n...

  4. Protein Complex Purification by Affinity Capture.

    Science.gov (United States)

    LaCava, John; Fernandez-Martinez, Javier; Hakhverdyan, Zhanna; Rout, Michael P

    2016-01-01

    Affinity capture has become a powerful technique for consistently purifying endogenous protein complexes, facilitating biochemical and biophysical assays on otherwise inaccessible biological assemblies, and enabling broader interactomic exploration. For this procedure, cells are broken and their contents separated and extracted into a solvent, permitting access to target macromolecular complexes thus released in solution. The complexes are specifically enriched from the extract onto a solid medium coupled with an affinity reagent-usually an antibody-that recognizes the target either directly or through an appended affinity tag, allowing subsequent characterization of the complex. Here, we discuss approaches and considerations for purifying endogenous yeast protein complexes by affinity capture. PMID:27371601

  5. Structural determinants of sigma receptor affinity

    International Nuclear Information System (INIS)

    The structural determinants of sigma receptor affinity have been evaluated by examining a wide range of compounds related to opioids, neuroleptics, and phenylpiperidine dopaminergic structures for affinity at sigma receptor-binding sites labeled with (+)-[3H]3-PPP. Among opioid compounds, requirements for sigma receptor affinity differ strikingly from the determinants of affinity for conventional opiate receptors. Sigma sites display reverse stereoselectivity to classical opiate receptors. Multi-ringed opiate-related compounds such as morphine and naloxone have negligible affinity for sigma sites, with the highest sigma receptor affinity apparent for benzomorphans which lack the C ring of opioids. Highest affinity among opioids and other compounds occurs with more lipophilic N-substituents. This feature is particularly striking among the 3-PPP derivatives as well as the opioids. The butyrophenone haloperidol is the most potent drug at sigma receptors we have detected. Among the series of butyrophenones, receptor affinity is primarily associated with the 4-phenylpiperidine moiety. Conformational calculations for various compounds indicate a fairly wide range of tolerance for distances between the aromatic ring and the amine nitrogen, which may account for the potency at sigma receptors of structures of considerable diversity. Among the wide range of structures that bind to sigma receptor-binding sites, the common pharmacophore associated with high receptor affinity is a phenylpiperidine with a lipophilic N-substituent

  6. Structural determinants of sigma receptor affinity

    Energy Technology Data Exchange (ETDEWEB)

    Largent, B.L.; Wikstroem, H.G.; Gundlach, A.L.; Snyder, S.H.

    1987-12-01

    The structural determinants of sigma receptor affinity have been evaluated by examining a wide range of compounds related to opioids, neuroleptics, and phenylpiperidine dopaminergic structures for affinity at sigma receptor-binding sites labeled with (+)-(/sup 3/H)3-PPP. Among opioid compounds, requirements for sigma receptor affinity differ strikingly from the determinants of affinity for conventional opiate receptors. Sigma sites display reverse stereoselectivity to classical opiate receptors. Multi-ringed opiate-related compounds such as morphine and naloxone have negligible affinity for sigma sites, with the highest sigma receptor affinity apparent for benzomorphans which lack the C ring of opioids. Highest affinity among opioids and other compounds occurs with more lipophilic N-substituents. This feature is particularly striking among the 3-PPP derivatives as well as the opioids. The butyrophenone haloperidol is the most potent drug at sigma receptors we have detected. Among the series of butyrophenones, receptor affinity is primarily associated with the 4-phenylpiperidine moiety. Conformational calculations for various compounds indicate a fairly wide range of tolerance for distances between the aromatic ring and the amine nitrogen, which may account for the potency at sigma receptors of structures of considerable diversity. Among the wide range of structures that bind to sigma receptor-binding sites, the common pharmacophore associated with high receptor affinity is a phenylpiperidine with a lipophilic N-substituent.

  7. A quantitative method for evaluating numerical simulation accuracy of time-transient Lamb wave propagation with its applications to selecting appropriate element size and time step.

    Science.gov (United States)

    Wan, Xiang; Xu, Guanghua; Zhang, Qing; Tse, Peter W; Tan, Haihui

    2016-01-01

    Lamb wave technique has been widely used in non-destructive evaluation (NDE) and structural health monitoring (SHM). However, due to the multi-mode characteristics and dispersive nature, Lamb wave propagation behavior is much more complex than that of bulk waves. Numerous numerical simulations on Lamb wave propagation have been conducted to study its physical principles. However, few quantitative studies on evaluating the accuracy of these numerical simulations were reported. In this paper, a method based on cross correlation analysis for quantitatively evaluating the simulation accuracy of time-transient Lamb waves propagation is proposed. Two kinds of error, affecting the position and shape accuracies are firstly identified. Consequently, two quantitative indices, i.e., the GVE (group velocity error) and MACCC (maximum absolute value of cross correlation coefficient) derived from cross correlation analysis between a simulated signal and a reference waveform, are proposed to assess the position and shape errors of the simulated signal. In this way, the simulation accuracy on the position and shape is quantitatively evaluated. In order to apply this proposed method to select appropriate element size and time step, a specialized 2D-FEM program combined with the proposed method is developed. Then, the proper element size considering different element types and time step considering different time integration schemes are selected. These results proved that the proposed method is feasible and effective, and can be used as an efficient tool for quantitatively evaluating and verifying the simulation accuracy of time-transient Lamb wave propagation. PMID:26315506

  8. A generalized photon propagator

    CERN Document Server

    Itin, Yakov

    2007-01-01

    A covariant gauge independent derivation of the generalized dispersion relation of electromagnetic waves in a medium with local and linear constitutive law is presented. A generalized photon propagator is derived. For Maxwell constitutive tensor, the standard light cone structure and the standard Feynman propagator are reinstated.

  9. Influence of the high-affinity growth hormone (GH)-binding protein on plasma profiles of free and bound GH and on the apparent half-life of GH. Modeling analysis and clinical applications.

    OpenAIRE

    Veldhuis, J D; Johnson, M.L.; Faunt, L M; MERCADO, M.; Baumann, G

    1993-01-01

    The discovery of a specific high-affinity growth hormone (GH) binding protein (GH-BP) in plasma adds complexity to the dynamics of GH secretion and clearance. Intuitive predictions are that such a protein would damp sharp oscillations in GH concentrations otherwise caused by bursts of GH secretion into the blood volume, prolong the apparent half-life of circulating GH, and contribute a reservoir function. To test these implicit considerations, we formulated an explicit mathematical model of p...

  10. Structure of classical affine and classical affine fractional W-algebras

    International Nuclear Information System (INIS)

    We introduce a classical BRST complex (See Definition 3.2.) and show that one can construct a classical affine W-algebra via the complex. This definition clarifies that classical affine W-algebras can be considered as quasi-classical limits of quantum affine W-algebras. We also give a definition of a classical affine fractional W-algebra as a Poisson vertex algebra. As in the classical affine case, a classical affine fractional W-algebra has two compatible λ-brackets and is isomorphic to an algebra of differential polynomials as a differential algebra. When a classical affine fractional W-algebra is associated to a minimal nilpotent, we describe explicit forms of free generators and compute λ-brackets between them. Provided some assumptions on a classical affine fractional W-algebra, we find an infinite sequence of integrable systems related to the algebra, using the generalized Drinfel’d and Sokolov reduction

  11. Affinity approaches in RNAi-based therapeutics purification.

    Science.gov (United States)

    Pereira, Patrícia; Queiroz, João A; Figueiras, Ana; Sousa, Fani

    2016-05-15

    The recent investigation on RNA interference (RNAi) related mechanisms and applications led to an increased awareness of the importance of RNA in biology. Nowadays, RNAi-based technology has emerged as a potentially powerful tool for silencing gene expression, being exploited to develop new therapeutics for treating a vast number of human disease conditions, as it is expected that this technology can be translated onto clinical applications in a near future. This approach makes use of a large number of small (namely short interfering RNAs, microRNAs and PIWI-interacting RNAs) and long non-coding RNAs (ncRNAs), which are likely to have a crucial role as the next generation therapeutics. The commercial and biomedical interest in these RNAi-based therapy applications have fostered the need to develop innovative procedures to easily and efficiently purify RNA, aiming to obtain the final product with high purity degree, good quality and biological activity. Recently, affinity chromatography has been applied to ncRNAs purification, in view of the high specificity. Therefore, this article intends to review the biogenesis pathways of regulatory ncRNAs and also to discuss the most significant and recent developments as well as applications of affinity chromatography in the challenging task of purifying ncRNAs. In addition, the importance of affinity chromatography in ncRNAs purification is addressed and prospects for what is forthcoming are presented. PMID:26830537

  12. Trust Propagation in Small Worlds

    DEFF Research Database (Denmark)

    Gray, Elizabeth; Seigneur, Jean-Marc; Chen, Yong;

    2003-01-01

    do not scale well. We aim to develop trust-based security mechanisms using small world concepts to optimise formation and propagation of trust amongst entities in these vast networks. In this regard, we surmise that in a very large mobile ad hoc network, trust, risk, and recommendations can be...... propagated through relatively short paths connecting entities. Our work describes the design of trust-formation and risk-assessment systems, as well as that of an entity recognition scheme, within the context of the small world network topology.......The possibility of a massive, networked infrastructure of diverse entities partaking in collaborative applications with each other increases more and more with the proliferation of mobile devices and the development of ad hoc networking technologies. In this context, traditional security measures...

  13. Error Propagation in a System Model

    Science.gov (United States)

    Schloegel, Kirk (Inventor); Bhatt, Devesh (Inventor); Oglesby, David V. (Inventor); Madl, Gabor (Inventor)

    2015-01-01

    Embodiments of the present subject matter can enable the analysis of signal value errors for system models. In an example, signal value errors can be propagated through the functional blocks of a system model to analyze possible effects as the signal value errors impact incident functional blocks. This propagation of the errors can be applicable to many models of computation including avionics models, synchronous data flow, and Kahn process networks.

  14. POPPY: Physical Optics Propagation in PYthon

    Science.gov (United States)

    Perrin, Marshall; Long, Joseph; Douglas, Ewan; Sivaramakrishnan, Anand; Slocum, Christine

    2016-02-01

    POPPY (Physical Optics Propagation in PYthon) simulates physical optical propagation including diffraction. It implements a flexible framework for modeling Fraunhofer and Fresnel diffraction and point spread function formation, particularly in the context of astronomical telescopes. POPPY provides the optical modeling framework for WebbPSF (ascl:1504.007) and was developed as part of a simulation package for JWST, but is available separately and is broadly applicable to many kinds of imaging simulations.

  15. Novel trends in affinity biosensors: current challenges and perspectives

    International Nuclear Information System (INIS)

    Molecular biorecognition processes facilitate physical and biochemical interactions between molecules in all crucial metabolic pathways. Perhaps the target analyte and the biorecognition element interactions have the most impactful use in biosensing applications. Traditional analytical sensing systems offer excellent biorecognition elements with the ability to detect and determine the presence of analytes. High affinity antibodies and DNA play an important role in the development of affinity biosensors based on electrochemical, optical and mass sensitive approaches. Advancements in this area routinely employ labels, label free, nanoparticles, multifunctional matrices, carbon nanotubes and other methods to meet the requirements of its own application. However, despite increasing affinity ceilings for conventional biosensors, the field draws back in meeting specifically important demands, such as long-term stability, ultrasensitivity, rapid detection, extreme selectivity, strong biological base, calibration, in vivo measurements, regeneration, satisfactory performance and ease of production. Nevertheless, recent efforts through this line have produced novel high-tech nanosensing systems such as ‘aptamers’ and ‘phages’ which exhibit high-throughput sensing. Aptamers and phages are powerful tools that excel over antibodies in sensibility, stability, multi-detection, in vivo measurements and regeneration. Phages are superior in stability, screening for affinity-based target molecules ranging from small to proteins and even cells, and easy production. In this review, we focus mainly on recent developments in affinity-based biosensors such as immunosensors, DNA sensors, emphasizing aptasensors and phage-based biosensors basing on novel electrochemical, optical and mass sensitive detection techniques. We also address enzyme inhibition-based biosensors and the current problems associated with the above sensors and their future perspectives. (topical review)

  16. Free C+ actions on affine threefolds

    OpenAIRE

    Kraft, H.

    2005-01-01

    We study algebraic actions of the additive group C+ on an affine threefold X and prove a smoothness property for the quotient morphism X -< X//C+. Then, following Shulim Kaliman, we give a proof of the conjecture that every free C+ action on affine 3-space C^3 is a translation.

  17. Lectures on extended affine Lie algebras

    CERN Document Server

    Neher, Erhard

    2010-01-01

    We give an introduction to the structure theory of extended affine Lie algebras, which provide a common framework for finite-dimensional semisimple, affine and toroidal Lie algebras. The notes are based on a lecture series given during the Fields Institute summer school at the University of Ottawa in June 2009.

  18. Affine Constellations Without Mutually Unbiased Counterparts

    CERN Document Server

    Weigert, Stefan

    2010-01-01

    It has been conjectured that a complete set of mutually unbiased bases in a space of dimension d exists if and only if there is an affine plane of order d. We introduce affine constellations and compare their existence properties with those of mutually unbiased constellations, mostly in dimension six. The observed discrepancies make a deeper relation between the two existence problems unlikely.

  19. Affine constellations without mutually unbiased counterparts

    Energy Technology Data Exchange (ETDEWEB)

    Weigert, Stefan [Department of Mathematics, University of York, York YO10 5DD (United Kingdom); Durt, Thomas, E-mail: slow500@york.ac.u, E-mail: thomdurt@vub.ac.b [IR-TONA, VUB, BE-1050 Brussels (Belgium)

    2010-10-08

    It has been conjectured that a complete set of mutually unbiased bases in a space of dimension d exists if and only if there is an affine plane of order d. We introduce affine constellations and compare their existence properties with those of mutually unbiased constellations. The observed discrepancies make a deeper relation between the two existence problems unlikely. (fast track communication)

  20. Dyes with high affinity for polylactide

    Institute of Scientific and Technical Information of China (English)

    Liang He; Shu Fen Zhang; Bing Tao Tang; Li Li Wang; Jin Zong Yang

    2007-01-01

    Attempts were made to develop dyes with high affinity for polylactide as an alternative to the existent commercial disperse dyes.The dyes synthesized according to the affinity concept of dye to polylactide exhibited excellent dyeing properties on polylactide compared with the commercial disperse dyes.

  1. Porosity of Self-affine Sets

    Institute of Scientific and Technical Information of China (English)

    Lifeng XI

    2008-01-01

    In this paper,it is proved that any self-affine set satisfying the strong separation condition is uniformly porous.The author constructs a self-affine set which is not porous,although the open set condition holds.Besides,the author also gives a C1 iterated function system such that its invariant set is not porous.

  2. Affine constellations without mutually unbiased counterparts

    International Nuclear Information System (INIS)

    It has been conjectured that a complete set of mutually unbiased bases in a space of dimension d exists if and only if there is an affine plane of order d. We introduce affine constellations and compare their existence properties with those of mutually unbiased constellations. The observed discrepancies make a deeper relation between the two existence problems unlikely. (fast track communication)

  3. Application of a linear elastic - brittle interface model to the crack initiation and propagation at fibre-matrix interface under biaxial transverse loads

    CERN Document Server

    Mantič, V; Blázquez, A; Graciani, E; París, F

    2013-01-01

    The crack onset and propagation at the fibre-matrix interface in a composite under tensile/compressive remote biaxial transverse loads is studied by a new linear elastic - (perfectly) brittle interface model. In this model the interface is represented by a continuous distribution of springs which simulates the presence of a thin elastic layer. The constitutive law for the continuous distribution of normal and tangential of initially linear elastic springs takes into account possible frictionless elastic contact between fibre and matrix once a portion of the interface is broken. A brittle failure criterion is employed for the distribution of springs, which enables the study of crack onset and propagation. This interface failure criterion takes into account the variation of the interface fracture toughness with the fracture mode mixity. The main advantages of the present interface model are its simplicity, robustness and its computational efficiency when the so-called sequentially linear analysis is applied. Mo...

  4. Lamb Waves Propagation along 3C-SiC/AlN Membranes for Application in Temperature-Compensated, High-Sensitivity Gravimetric Sensors

    Science.gov (United States)

    Caliendo, Cinzia; D'Amico, Arnaldo; Castro, Fabio Lo

    2013-01-01

    The propagation of the fundamental quasi-symmetric Lamb mode S0 travelling along 3C-SiC/c-AlN composite plates is theoretically studied with respect to the AlN and SiC film thickness, the acoustic wave propagation direction and the electrical boundary conditions. The temperature effects on the phase velocity have been considered for four AlN/SiC-based electroacoustic coupling configurations, specifically addressing the design of temperature-compensated, enhanced-coupling, GHz-range electroacoustic devices. The gravimetric sensitivity and resolution of the four temperature-stable SiC/AlN composite structures are theoretically investigated with respect to both the AlN and SiC sensing surface. The SiC/AlN-based sensor performances are compared to those of surface acoustic waves and Lamb S0 mode mass sensors implemented on bulk conventional piezoelectric materials and on thin suspended membranes. PMID:23282585

  5. Light propagation characteristics in photonic crystal fibers with α-power profiles of air hole diameter distributions and their application to fiber collimator

    Science.gov (United States)

    Yokota, Hirohisa; Higuchi, Keiichi; Imai, Yoh

    2016-08-01

    Light propagation characteristics in photonic crystal fibers (PCFs) with α-power profiles of air hole diameter distributions were theoretically investigated. It was clarified that the intensity peak of the beam propagating in the PCF with Gaussian beam excitation varied periodically with little power attenuation. It was found that the envelope of the periodic intensity variation depended on α. We theoretically demonstrated that the PCF with the α-power profile of the air hole diameter distribution could be applied to a collimator for a conventional PCF with uniform air holes in Gaussian beam excitation to reduce coupling loss, where a PCF of appropriate length with the α-power air hole diameter distribution was spliced to a conventional PCF. It was also found that the coupling efficiency was higher for a larger α.

  6. Application of In vitro Tissue Culture Techniques for Propagation of Amygdalus communis L. Cultivars, Garrigues and Yaltsinki

    OpenAIRE

    Haki Yapar; Canan Can; Mehmet Ozaslan; Turkan Aytekin; Halit Atli

    2006-01-01

    Almond (Amygdalus communis L.) is planted and naturally spreads in the Southeastern Anatolian region where some hybrid varieties are cultivated and the adaptation studies have still been continued. Although being easily propagated through grafting, plantation in large areas may have some problems, due to the environmental stress. Embryos, nodal segmets of mature shoots and shoot tips of two A. communis L. cultivars, Garrigues and Yaltsinki, were cultured on MS media supplemented with several ...

  7. Experimental study of hot electrons propagation and energy deposition in solid or laser-shock compressed targets: applications to fast igniter

    International Nuclear Information System (INIS)

    In the fast igniter scheme, a recent approach proposed for the inertial confinement fusion, the idea is to dissociate the fuel ignition phase from its compression. The ignition phase would be then achieved by means of an external energy source: a fast electron beam generated by the interaction with an ultra-intense laser. The main goal of this work is to study the mechanisms of the hot electron energy transfer to the compressed fuel. We intent in particular to study the role of the electric and collisional effects involved in the hot electron propagation in a medium with properties similar to the compressed fuel. We carried out two experiments, one at the Vulcan laser facility (England) and the second one at the new LULI 100 TW laser (France). During the first experiment, we obtained the first results on the hot electron propagation in a dense and hot plasma. The innovating aspect of this work was in particular the use of the laser-shock technique to generate high pressures, allowing the strongly correlated and degenerated plasma to be created. The role of the electric and magnetic effects due to the space charge associated with the fast electron beam has been investigated in the second experiment. Here we studied the propagation in materials with different electrical characteristics: an insulator and a conductor. The analysis of the results showed that only by taking into account simultaneously the two propagation mechanisms (collisions and electric effects) a correct treatment of the energy deposition is possible. We also showed the importance of taking into account the induced modifications due to the electrons beam crossing the target, especially the induced heating. (author)

  8. Quantum mechanical analysis of the elastic propagation of electrons in the Au/Si system: application to Ballistic Electron Emission Microscopy

    OpenAIRE

    Reuter, K.; Andres, P. L. de; Garcia-Vidal, F. J.; Sestovic, D.; Flores, F; Heinz, K.

    1998-01-01

    We present a Green's function approach based on a LCAO scheme to compute the elastic propagation of electrons injected from a STM tip into a metallic film. The obtained 2D current distribution in real and reciprocal space furnish a good representation of the elastic component of Ballistic Electron Emission Microscopy (BEEM) currents. Since this component accurately approximates the total current in the near threshold region, this procedure allows --in contrast to prior analyses-- to take into...

  9. Improving image segmentation by learning region affinities

    Energy Technology Data Exchange (ETDEWEB)

    Prasad, Lakshman [Los Alamos National Laboratory; Yang, Xingwei [TEMPLE UNIV.; Latecki, Longin J [TEMPLE UNIV.

    2010-11-03

    We utilize the context information of other regions in hierarchical image segmentation to learn new regions affinities. It is well known that a single choice of quantization of an image space is highly unlikely to be a common optimal quantization level for all categories. Each level of quantization has its own benefits. Therefore, we utilize the hierarchical information among different quantizations as well as spatial proximity of their regions. The proposed affinity learning takes into account higher order relations among image regions, both local and long range relations, making it robust to instabilities and errors of the original, pairwise region affinities. Once the learnt affinities are obtained, we use a standard image segmentation algorithm to get the final segmentation. Moreover, the learnt affinities can be naturally unutilized in interactive segmentation. Experimental results on Berkeley Segmentation Dataset and MSRC Object Recognition Dataset are comparable and in some aspects better than the state-of-art methods.

  10. Gear Crack Propagation Investigation

    Science.gov (United States)

    1995-01-01

    Reduced weight is a major design goal in aircraft power transmissions. Some gear designs incorporate thin rims to help meet this goal. Thin rims, however, may lead to bending fatigue cracks. These cracks may propagate through a gear tooth or into the gear rim. A crack that propagates through a tooth would probably not be catastrophic, and ample warning of a failure could be possible. On the other hand, a crack that propagates through the rim would be catastrophic. Such cracks could lead to disengagement of a rotor or propeller from an engine, loss of an aircraft, and fatalities. To help create and validate tools for the gear designer, the NASA Lewis Research Center performed in-house analytical and experimental studies to investigate the effect of rim thickness on gear-tooth crack propagation. Our goal was to determine whether cracks grew through gear teeth (benign failure mode) or through gear rims (catastrophic failure mode) for various rim thicknesses. In addition, we investigated the effect of rim thickness on crack propagation life. A finite-element-based computer program simulated gear-tooth crack propagation. The analysis used principles of linear elastic fracture mechanics, and quarter-point, triangular elements were used at the crack tip to represent the stress singularity. The program had an automated crack propagation option in which cracks were grown numerically via an automated remeshing scheme. Crack-tip stress-intensity factors were estimated to determine crack-propagation direction. Also, various fatigue crack growth models were used to estimate crack-propagation life. Experiments were performed in Lewis' Spur Gear Fatigue Rig to validate predicted crack propagation results. Gears with various backup ratios were tested to validate crack-path predictions. Also, test gears were installed with special crack-propagation gages in the tooth fillet region to measure bending-fatigue crack growth. From both predictions and tests, gears with backup ratios

  11. Native Elution of Yeast Protein Complexes Obtained by Affinity Capture.

    Science.gov (United States)

    LaCava, John; Fernandez-Martinez, Javier; Rout, Michael P

    2016-01-01

    This protocol describes two options for the native (nondenaturing) elution of protein complexes obtained by affinity capture. The first approach involves the elution of complexes purified through a tag that includes a human rhinovirus 3C protease (PreScission protease) cleavage site sequence between the protein of interest and the tag. Incubation with the protease cleaves immobilized complexes from the affinity medium. The second approach involves the release of protein A-tagged protein complexes using a competitive elution reagent called PEGylOx. The degree of purity of the native assemblies eluted is sample dependent and strongly influenced by the affinity capture. It should be noted that the efficiency of native elution is commonly lower than that of elution by a denaturing agent (e.g., SDS) and the release of the complex will be limited by the activity of the protease or the inhibition constant (Ki) of the competitive release agent. However, an advantage of native release is that some nonspecifically bound materials tend to stay adsorbed to the affinity medium, providing an eluted fraction of higher purity. Finally, keep in mind that the presence of the protease or elution peptide could potentially affect downstream applications; thus, their removal should be considered. PMID:27371597

  12. Modelling of waves propagation on irregular surfaces using ray tracing and GTD approaches: Application to head waves simulation in TOFD inspections for NDT

    International Nuclear Information System (INIS)

    The Time of Flight Diffraction (TOFD) technique is a classical ultrasonic method used in ultrasonic non-destructive evaluation, which allows a precise positioning and a quantitative size evaluation of cracks in the inspected material. Among the typical phenomena arising in the current TOFD inspection, the so-called 'head wave' is the first contribution reaching the receiver. The head wave propagation on a planar interface is well known and identified as a critical refraction taking place on the material surface. On irregular surfaces, it has been shown that the head wave results from the melting of surface and bulk waves mechanisms and that surface irregularities are responsible for numerous diffractions of the incident head wave. To simulate such behaviour, a model has been developed using a ray tracing technique based on time of flight minimization (generalized Fermat's principle). It enables the calculation of the ray path and the corresponding time of flight of all waves propagating in the material, including the head wave. To obtain a complete propagation model for these waves (both trajectory and amplitude), the integration of Geometrical Theory of Diffraction (GTD) models is currently performed by coupling them with the ray-based approach discussed above.

  13. Affine-Detection Loophole in Quantum Data Processing

    OpenAIRE

    Vlasov, Alexander Yu.

    2002-01-01

    Here is considered a specific detection loophole, that is relevant not only to testing of quantum nonlocality, but also to some other applications of quantum computations and communications. It is described by a simple affine relation between different quantum "data structures" like pure and mixed state, separable and inseparable one. It is shown also, that due to such relations imperfect device for a classical model may mimic measurements of quantum correlations on ideal equipment.

  14. Numerical simulation methods for wave propagation through optical waveguides

    International Nuclear Information System (INIS)

    The simulation of the field propagation through waveguides requires numerical solutions of the Helmholtz equation. For this purpose a method based on the principle of orthogonal collocation was recently developed. The method is also applicable to nonlinear pulse propagation through optical fibers. Some of the salient features of this method and its application to both linear and nonlinear wave propagation through optical waveguides are discussed in this report. 51 refs, 8 figs, 2 tabs

  15. Expectation Particle Belief Propagation

    OpenAIRE

    Lienart, Thibaut; Teh, Yee Whye; Doucet, Arnaud

    2015-01-01

    We propose an original particle-based implementation of the Loopy Belief Propagation (LPB) algorithm for pairwise Markov Random Fields (MRF) on a continuous state space. The algorithm constructs adaptively efficient proposal distributions approximating the local beliefs at each note of the MRF. This is achieved by considering proposal distributions in the exponential family whose parameters are updated iterately in an Expectation Propagation (EP) framework. The proposed particle scheme provid...

  16. Survey Propagation Revisited

    OpenAIRE

    Kroc, Lukas; Sabharwal, Ashish; Selman, Bart

    2012-01-01

    Survey propagation (SP) is an exciting new technique that has been remarkably successful at solving very large hard combinatorial problems, such as determining the satisfiability of Boolean formulas. In a promising attempt at understanding the success of SP, it was recently shown that SP can be viewed as a form of belief propagation, computing marginal probabilities over certain objects called covers of a formula. This explanation was, however, shortly dismissed by experiments suggesting that...

  17. Importance of non-affine viscoelastic response in disordered fibre networks.

    Science.gov (United States)

    Rizzi, L G; Auer, S; Head, D A

    2016-05-11

    Disordered fibre networks are ubiquitous in nature and have a wide range of industrial applications as novel biomaterials. Predicting their viscoelastic response is straightforward for affine deformations that are uniform over all length scales, but when affinity fails, as has been observed experimentally, modelling becomes challenging. Here we present a numerical methodology, related to an existing framework for amorphous packings, to predict the steady-state viscoelastic spectra and degree of affinity for disordered fibre networks driven at arbitrary frequencies. Applying this method to a peptide gel model reveals a monotonic increase of the shear modulus as the soft, non-affine normal modes are successively suppressed as the driving frequency increases. In addition to being dominated by fibril bending, these low frequency network modes are also shown to be delocalised. The presented methodology provides insights into the importance of non-affinity in the viscoelastic response of peptide gels, and is easily extendible to all types of fibre networks. PMID:27079274

  18. DNA motif elucidation using belief propagation

    KAUST Repository

    Wong, Ka-Chun

    2013-06-29

    Protein-binding microarray (PBM) is a high-throughout platform that can measure the DNA-binding preference of a protein in a comprehensive and unbiased manner. A typical PBM experiment can measure binding signal intensities of a protein to all the possible DNA k-mers (k = 8 ?10); such comprehensive binding affinity data usually need to be reduced and represented as motif models before they can be further analyzed and applied. Since proteins can often bind to DNA in multiple modes, one of the major challenges is to decompose the comprehensive affinity data into multimodal motif representations. Here, we describe a new algorithm that uses Hidden Markov Models (HMMs) and can derive precise and multimodal motifs using belief propagations. We describe an HMM-based approach using belief propagations (kmerHMM), which accepts and preprocesses PBM probe raw data into median-binding intensities of individual k-mers. The k-mers are ranked and aligned for training an HMM as the underlying motif representation. Multiple motifs are then extracted from the HMM using belief propagations. Comparisons of kmerHMM with other leading methods on several data sets demonstrated its effectiveness and uniqueness. Especially, it achieved the best performance on more than half of the data sets. In addition, the multiple binding modes derived by kmerHMM are biologically meaningful and will be useful in interpreting other genome-wide data such as those generated from ChIP-seq. The executables and source codes are available at the authors\\' websites: e.g. http://www.cs.toronto.edu/?wkc/kmerHMM. 2013 The Author(s).

  19. Dike Propagation Near Drifts

    International Nuclear Information System (INIS)

    The purpose of this Analysis and Model Report (AMR) supporting the Site Recommendation/License Application (SR/LA) for the Yucca Mountain Project is the development of elementary analyses of the interactions of a hypothetical dike with a repository drift (i.e., tunnel) and with the drift contents at the potential Yucca Mountain repository. This effort is intended to support the analysis of disruptive events for Total System Performance Assessment (TSPA). This AMR supports the Process Model Report (PMR) on disruptive events (CRWMS M and O 2000a). This purpose is documented in the development plan (DP) ''Coordinate Modeling of Dike Propagation Near Drifts Consequences for TSPA-SR/LA'' (CRWMS M and O 2000b). Evaluation of that Development Plan and the work to be conducted to prepare Interim Change Notice (ICN) 1 of this report, which now includes the design option of ''Open'' drifts, indicated that no revision to that DP was needed. These analyses are intended to provide reasonable bounds for a number of expected effects: (1) Temperature changes to the waste package from exposure to magma; (2) The gas flow available to degrade waste containers during the intrusion; (3) Movement of the waste package as it is displaced by the gas, pyroclasts and magma from the intruding dike (the number of packages damaged); (4) Movement of the backfill (Backfill is treated here as a design option); (5) The nature of the mechanics of the dike/drift interaction. These analyses serve two objectives: to provide preliminary analyses needed to support evaluation of the consequences of an intrusive event and to provide a basis for addressing some of the concerns of the Nuclear Regulatory Commission (NRC) expressed in the Igneous Activity Issue Resolution Status Report

  20. Dike Propagation Near Drifts

    Energy Technology Data Exchange (ETDEWEB)

    NA

    2002-03-04

    The purpose of this Analysis and Model Report (AMR) supporting the Site Recommendation/License Application (SR/LA) for the Yucca Mountain Project is the development of elementary analyses of the interactions of a hypothetical dike with a repository drift (i.e., tunnel) and with the drift contents at the potential Yucca Mountain repository. This effort is intended to support the analysis of disruptive events for Total System Performance Assessment (TSPA). This AMR supports the Process Model Report (PMR) on disruptive events (CRWMS M&O 2000a). This purpose is documented in the development plan (DP) ''Coordinate Modeling of Dike Propagation Near Drifts Consequences for TSPA-SR/LA'' (CRWMS M&O 2000b). Evaluation of that Development Plan and the work to be conducted to prepare Interim Change Notice (ICN) 1 of this report, which now includes the design option of ''Open'' drifts, indicated that no revision to that DP was needed. These analyses are intended to provide reasonable bounds for a number of expected effects: (1) Temperature changes to the waste package from exposure to magma; (2) The gas flow available to degrade waste containers during the intrusion; (3) Movement of the waste package as it is displaced by the gas, pyroclasts and magma from the intruding dike (the number of packages damaged); (4) Movement of the backfill (Backfill is treated here as a design option); (5) The nature of the mechanics of the dike/drift interaction. These analyses serve two objectives: to provide preliminary analyses needed to support evaluation of the consequences of an intrusive event and to provide a basis for addressing some of the concerns of the Nuclear Regulatory Commission (NRC) expressed in the Igneous Activity Issue Resolution Status Report.

  1. New ray tracing method to investigate the various effects on wave propagation in medical scenario: an application of wireless body area network.

    Science.gov (United States)

    Islam, M J; Reza, A W; Kausar, A S M Z; Ramiah, H

    2014-01-01

    The advent of technology with the increasing use of wireless network has led to the development of Wireless Body Area Network (WBAN) to continuously monitor the change of physiological data in a cost efficient manner. As numerous researches on wave propagation characterization have been done in intrabody communication, this study has given emphasis on the wave propagation characterization between the control units (CUs) and wireless access point (AP) in a hospital scenario. Ray tracing is a tool to predict the rays to characterize the wave propagation. It takes huge simulation time, especially when multiple transmitters are involved to transmit physiological data in a realistic hospital environment. Therefore, this study has developed an accelerated ray tracing method based on the nearest neighbor cell and prior knowledge of intersection techniques. Beside this, Red-Black tree is used to store and provide a faster retrieval mechanism of objects in the hospital environment. To prove the superiority, detailed complexity analysis and calculations of reflection and transmission coefficients are also presented in this paper. The results show that the proposed method is about 1.51, 2.1, and 2.9 times faster than the Object Distribution Technique (ODT), Space Volumetric Partitioning (SVP), and Angular Z-Buffer (AZB) methods, respectively. To show the various effects on received power in 60 GHz frequency, few comparisons are made and it is found that on average -9.44 dBm, -8.23 dBm, and -9.27 dBm received power attenuations should be considered when human, AP, and CU move in a given hospital scenario. PMID:25133220

  2. Observation and Analysis of Affinity Law Deviations through Tested Performance of Liquefied Gas Reaction Turbines

    Directory of Open Access Journals (Sweden)

    Sarah D. Alison-Youel

    2008-11-01

    Full Text Available Liquefied gas reaction turbines are subject to the hydraulic affinity laws. Particularly for liquefied hydrocarbon gas-driven turbines, deviations from the affinity laws are encountered. In the case of reaction turbines, where the geometry is fixed, the affinity law relationships between flow, head, and rotational speed are relevant. Field experience confirms that the affinity law relationships are adequate, but that the predictions made also tend to deviate from real turbine performance. Part of the deviations seen may be attributed to the nonideal fluid; however, further examination is warranted. This paper presents an investigation into the affinity law relationships between head, flow, and rotational speed in conjunction with actual turbine performance. The three basic affinity law relationships are combined to form the most general performance equation. This equation subsequently incorporates both the affinity law relationships and the conservation of energy principal. Application of real turbine test data shows that this general performance equation presents a more accurate representation of turbine performance than the affinity law relationships alone.

  3. Optimized Affinity Capture of Yeast Protein Complexes.

    Science.gov (United States)

    LaCava, John; Fernandez-Martinez, Javier; Hakhverdyan, Zhanna; Rout, Michael P

    2016-01-01

    Here, we describe an affinity isolation protocol. It uses cryomilled yeast cell powder for producing cell extracts and antibody-conjugated paramagnetic beads for affinity capture. Guidelines for determining the optimal extraction solvent composition are provided. Captured proteins are eluted in a denaturing solvent (sodium dodecyl sulfate polyacrylamide gel electrophoresis sample buffer) for gel-based proteomic analyses. Although the procedures can be modified to use other sources of cell extract and other forms of affinity media, to date we have consistently obtained the best results with the method presented. PMID:27371596

  4. Corner Transfer Matrices and Quantum Affine Algebras

    CERN Document Server

    Foda, O E; Foda, Omar; Miwa, Tetsuji

    1992-01-01

    Let H be the corner-transfer-matrix Hamiltonian for the six-vertex model in the anti-ferroelectric regime. It acts on the infinite tensor product W = V . V . V ....., where is the 2-dimensional irreducible representation of the quantum affine sl(2). We observe that H is the derivation of quantum affine sl(2), and conjecture that the eigenvectors of H form the level-1 vacuum representation of quantum affine sl(2). We report on checks in support of our conjecture.

  5. 试析培养思政教育亲和力进程中教育载体的有效运用%Effective Application of Educational Carrier in the Process of Developing Ideological and Political Education Affinity

    Institute of Scientific and Technical Information of China (English)

    任菲

    2011-01-01

    The carrier of Ideological and political education is the ideological and political education practice in the communica-tion of Ideological and political education and the education of a bridge and medium.Through the ideological education carrier ef-fectively to develop ideological and political education in the affinity.Ideological and political education the affinity of the promo-tion,can be from improving the ideological and political education of comprehensive qualities,change the ideological and political education teaching idea,respect educatees(including its ideological and political education needs) and other aspects.%思想政治教育载体是思想政治教育实践中沟通思想政治教育者和受教育者的一个桥梁和媒介。通过思想教育载体的有效运用来培养思想政治教育中的亲和力。思想政治教育者亲和力的提升,可以从提高思想政治教育者的综合素养,转变思想政治教育者的教学观念,尊重受教育者(包括其思想政治教育需要)等方面入手。

  6. Crack propagation in rubber-like materials

    International Nuclear Information System (INIS)

    Crack propagation in rubber-like materials is of great practical importance but still not well understood. We study the contribution to the crack propagation energy (per unit area) G from the viscoelastic deformations of the rubber in front of the propagating crack tip. We show that G takes the standard form G(v,T) = G0[1+f(v,T)] where G0 is associated with the (complex) bond-breaking processes at the crack tip while f(v,T) is determined by the viscoelastic energy dissipation in front of the crack tip. As applications, we discuss the role of crack propagation for adhesion, rolling resistance and sliding friction for smooth surfaces, and for rubber wear. (topical review)

  7. Pulse Wave Propagation in the Arterial Tree

    Science.gov (United States)

    van de Vosse, Frans N.; Stergiopulos, Nikos

    2011-01-01

    The beating heart creates blood pressure and flow pulsations that propagate as waves through the arterial tree that are reflected at transitions in arterial geometry and elasticity. Waves carry information about the matter in which they propagate. Therefore, modeling of arterial wave propagation extends our knowledge about the functioning of the cardiovascular system and provides a means to diagnose disorders and predict the outcome of medical interventions. In this review we focus on the physical and mathematical modeling of pulse wave propagation, based on general fluid dynamical principles. In addition we present potential applications in cardiovascular research and clinical practice. Models of short- and long-term adaptation of the arterial system and methods that deal with uncertainties in personalized model parameters and boundary conditions are briefly discussed, as they are believed to be major topics for further study and will boost the significance of arterial pulse wave modeling even more.

  8. Modeling of the propagation and reception of elastic waves emitted by a crack under stress. Application to the simulation of non-destructive testing by acoustic emission

    International Nuclear Information System (INIS)

    AE Non-destructive testing is used in many fields such as nuclear energy, oil and gas, civil engineering or mechanical engineering to check the integrity of structures under stress. Depending on the ratio of structure thickness to wavelength, the energy released by a crack under stress can propagate either as guided waves (in thin structures) or as Rayleigh wave (in thick structures). The analysis of signals resulting from this ultrasonic 'passive' method is particularly difficult due to the complexity of typically measured signals. The objective of this thesis is to develop models to enable the simulation of AE testing experiments in the case of thick or thin structure. The developed models rely on the coupling between an AE source model, wave propagation models and an AE Sensor model. In the case of thick structures two 2D models (for plane and cylindrical surfaces) and a 3D model (for plane surface) have been developed to predict the signal corresponding to the Rayleigh wave emitted by a crack under stress. In the case of thin structures, a 2D model has been developed to predict the signal corresponding to the guided modes emitted by a crack under stress. Several parametric studies have been conducted to determine the influence of the different model input data on the AE signals and thus help to interpret AE testing results. (author)

  9. Theory and application of hydraulic fracture propagation in fractured reservoirs%裂缝性储层水力裂缝延展理论与应用

    Institute of Scientific and Technical Information of China (English)

    孙鹏飞

    2015-01-01

    The existence of natural fractures in the fractured reservoirs makes the regularity of fracture initiation and fracture propagation extremely complex.This paper summarizes the model of traditional hydraulic fracturing and the theory of hydraulic fracture propagation in fractured reservoirs,and then applies fracturing design software to design the fracturing of one well in Honghe oil field combining with field data,and finally concludes the optimized results considering the influence of fractal theory.%在裂缝性储层储层中,由于天然裂缝的存在,使得裂缝起裂和裂缝延伸规律异常复杂。总结传统水力压裂模型及裂缝性储层水力裂缝扩展理论,结合现场资料应用压裂设计软件设计红河油田某井的压裂,在考虑分析影响的前提下得出优化结果。

  10. Automorphisms in Birational and Affine Geometry

    CERN Document Server

    Ciliberto, Ciro; Flenner, Hubert; McKernan, James; Prokhorov, Yuri; Zaidenberg, Mikhail

    2014-01-01

    The main focus of this volume is on the problem of describing the automorphism groups of affine and projective varieties, a classical subject in algebraic geometry where, in both cases, the automorphism group is often infinite dimensional. The collection covers a wide range of topics and is intended for researchers in the fields of classical algebraic geometry and birational geometry (Cremona groups) as well as affine geometry with an emphasis on algebraic group actions and automorphism groups. It presents original research and surveys and provides a valuable overview of the current state of the art in these topics. Bringing together specialists from projective, birational algebraic geometry and affine and complex algebraic geometry, including Mori theory and algebraic group actions, this book is the result of ensuing talks and discussions from the conference “Groups of Automorphisms in Birational and Affine Geometry” held in October 2012, at the CIRM, Levico Terme, Italy. The talks at the conference high...

  11. Propagation in thermal explosions

    International Nuclear Information System (INIS)

    In a number a small scale experiments the propagation phenomena in thermal explosions caused by contact of a molten metal with water were studied. To investigate the rapid vapor-blanket collapse a small amount of molten tin (800 deg C) was poured on to a crucible under water at decreased pressure. After pressurization to 1 bar the pressure rise in the vessel was measured and the occurring events were observed by cinephotography (8000ps-1). The experiment showed that explosion propagation by blanket collapse is energetically possible. Similar experiments were performed with a larger interacting surface in a through shaped and in a think tank shaped arrangement, which demonstrated that propagation actually occured; the propagation velocity could be estimated to about 5-103cm s-1. The findings favour the interpretation that the explosion is driven by fragmentation rather than by super heat. Fragmentation or mixing can occur through self-driven collapse and possibly by penetration of coolant jets formed by the collapse in the blanket. In a continuously propagation explosion, Taylor and Kelvin-Helmholtz instabilities may take part in the mixing process

  12. Synthesis of a New Series of Bone Affinity Compounds

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    A new series of bone affinity compounds were synthesized by linking chrysophanol with 5-fluorouracil derivatives. Their bone affinity was established by hydroxyapafive (HA)affinity experiment in vitro, and their cytostatic effects were shown by the MTT assay.

  13. Affine Moment Invariants Generated by Graph Method

    Czech Academy of Sciences Publication Activity Database

    Suk, Tomáš; Flusser, Jan

    2011-01-01

    Roč. 44, č. 9 (2011), 2047 – 2056. ISSN 0031-3203 R&D Projects: GA ČR(CZ) GA102/08/1593 Institutional research plan: CEZ:AV0Z10750506 Keywords : Image moments * Object recognition * Affine transformation * Affine moment invariants * Pseudoinvariants * Graph representation * Irreducibility * Independence Subject RIV: IN - Informatics, Computer Science Impact factor: 2.292, year: 2011 http://library.utia.cas.cz/separaty/2011/ZOI/suk-0359752.pdf

  14. On Affine Fusion and the Phase Model

    OpenAIRE

    Walton, Mark A.

    2012-01-01

    A brief review is given of the integrable realization of affine fusion discovered recently by Korff and Stroppel. They showed that the affine fusion of the $su(n)$ Wess-Zumino-Novikov-Witten (WZNW) conformal field theories appears in a simple integrable system known as the phase model. The Yang-Baxter equation leads to the construction of commuting operators as Schur polynomials, with noncommuting hopping operators as arguments. The algebraic Bethe ansatz diagonalizes them, revealing a connec...

  15. Purely affine elementary su(N) fusions

    OpenAIRE

    Rasmussen, Jorgen; Walton, Mark A.

    2001-01-01

    We consider three-point couplings in simple Lie algebras -- singlets in triple tensor products of their integrable highest weight representations. A coupling can be expressed as a linear combination of products of finitely many elementary couplings. This carries over to affine fusion, the fusion of Wess-Zumino-Witten conformal field theories, where the expressions are in terms of elementary fusions. In the case of su(4) it has been observed that there is a purely affine elementary fusion, i.e...

  16. Complete algebraic vector fields on affine surfaces

    OpenAIRE

    Kaliman, Shulim; Kutzschebauch, Frank; Leuenberger, Matthias

    2014-01-01

    Let $\\AAutH (X)$ be the subgroup of the group $\\AutH (X)$ of holomorphic automorphisms of a normal affine algebraic surface $X$ generated by elements of flows associated with complete algebraic vector fields. Our main result is a classification of all normal affine algebraic surfaces $X$ quasi-homogeneous under $\\AAutH (X)$ in terms of the dual graphs of the boundaries $\\bX \\setminus X$ of their SNC-completions $\\bX$.

  17. Fan affinity laws from a collision model

    International Nuclear Information System (INIS)

    The performance of a fan is usually estimated using hydrodynamical considerations. The calculations are long and involved and the results are expressed in terms of three affinity laws. In this paper we use kinetic theory to attack this problem. A hard sphere collision model is used, and subsequently a correction to account for the flow behaviour of air is incorporated. Our calculations prove the affinity laws and provide numerical estimates of the air delivery, thrust and drag on a rotating fan. (paper)

  18. A MEMS Dielectric Affinity Glucose Biosensor

    OpenAIRE

    Xian HUANG; Li, SiQi; Davis, Erin; Li, Dachao; Wang, Qian; Lin, Qiao

    2013-01-01

    Continuous glucose monitoring (CGM) sensors based on affinity detection are desirable for long-term and stable glucose management. However, most affinity sensors contain mechanical moving structures and complex design in sensor actuation and signal readout, limiting their reliability in subcutaneously implantable glucose detection. We have previously demonstrated a proof-of-concept dielectric glucose sensor that measured pre-mixed glucose-sensitive polymer solutions at various glucose concent...

  19. Application of Gaussian beam ray-equivalent model and back-propagation artificial neural network in laser diode fast axis collimator assembly.

    Science.gov (United States)

    Yu, Hao; Rossi, Giammarco; Braglia, Andrea; Perrone, Guido

    2016-08-10

    The paper presents the development of a tool based on a back-propagation artificial neural network to assist in the accurate positioning of the lenses used to collimate the beam from semiconductor laser diodes along the so-called fast axis. After training using a Gaussian beam ray-equivalent model, the network is capable of indicating the tilt, decenter, and defocus of such lenses from the measured field distribution, so the operator can determine the errors with respect to the actual lens position and optimize the diode assembly procedure. An experimental validation using a typical configuration exploited in multi-emitter diode module assembly and fast axis collimating lenses with different focal lengths and numerical apertures is reported. PMID:27534506

  20. Pengkajian Penerapan Teknik Budidaya Rhizophora mucronata dengan Stek Hipokotil (Study on Propagation Technique Application of Rhizophora mucronata Using Hypocotyl Cutting System

    Directory of Open Access Journals (Sweden)

    Neni Mulyani

    2007-01-01

    Full Text Available Research on the vegetative propagation of Rhizophora mucronata using hypocotyl cutting sistem was carried out at Faculty of Forestry, Bogor Agricultural University. Histological analysis of adventitous shoot was done at Biotechnology and Tree Breeding Laboratory, SEAMEO-BIOTROP. Three types of hypocotyl cutting (complete hypocotyl, top part of cut-hypocotyl and bottom part of cut-hypocotyl were induced using 6-BAP hormones at 0 and 500 ppm. Adventitous shoot of bottom part of cut-hypocotyl appeared 140 days after planting. Shoot from complete hypocotyl and top part of cut-hypocotyl grew earlier than adventitous shoot from bottom part of cut-hypocotyl. Hystologycal analysis of adventitous shoot showed the existance of primary meristem, stipule and leaf primordia. The growth of complete hipocotyl was higher than both of top part of cut-hypocotyl and bottom part of cut-hypocotyl. There was no effect of hormone induction on the shoot growth of them.

  1. Temporal scaling in information propagation

    OpenAIRE

    Junming Huang; Chao Li; Wen-Qiang Wang; Hua-Wei Shen; Guojie Li; Xue-Qi Cheng

    2014-01-01

    For the study of information propagation, one fundamental problem is uncovering universal laws governing the dynamics of information propagation. This problem, from the microscopic perspective, is formulated as estimating the propagation probability that a piece of information propagates from one individual to another. Such a propagation probability generally depends on two major classes of factors: the intrinsic attractiveness of information and the interactions between individuals. Despite ...

  2. An Analysis of a Transport System Using Non-Affine Transformations

    Directory of Open Access Journals (Sweden)

    Péter Ficzer

    2011-09-01

    Full Text Available The authors investigated the transformation possibilities and particularly the usage of non-affine transformations of maps in order to analyse the current status and development possibilities of the Hungarian railway system. In the introduction, the authors overview the theoretical background of map transformations and then present the detailed description of the non-parameter affine transformations and their applicability to the evaluation of railway networks.

  3. Nonlinear propagation of light in structured media: generalized unidirectional pulse propagation equations

    OpenAIRE

    Andreasen, J.; Kolesik, M.

    2012-01-01

    Unidirectional pulse propagation equations [UPPE, Phys. Rev. E 70, 036604 (2004)] have provided a theoretical underpinning for computer-aided investigations into dynamics of high-power ultrashort laser pulses and have been successfully utilized for almost a decade. Unfortunately, they are restricted to applications in bulk media or, with additional approximations, to simple waveguide geometries in which only a few guided modes can approximate the propagating waveform. The purpose of this work...

  4. GRC RF Propagation Studies

    Science.gov (United States)

    Nessel, James

    2013-01-01

    NASA Glenn Research Center has been involved in the characterization of atmospheric effects on space communications links operating at Ka-band and above for the past 20 years. This presentation reports out on the most recent activities of propagation characterization that NASA is currently involved in.

  5. DROMO propagator revisited

    Science.gov (United States)

    Urrutxua, Hodei; Sanjurjo-Rivo, Manuel; Peláez, Jesús

    2016-01-01

    In the year 2000 an in-house orbital propagator called DROMO (Peláez et al. in Celest Mech Dyn Astron 97:131-150, 2007. doi: 10.1007/s10569-006-9056-3) was developed by the Space Dynamics Group of the Technical University of Madrid, based in a set of redundant variables including Euler-Rodrigues parameters. An original deduction of the DROMO propagator is carried out, underlining its close relation with the ideal frame concept introduced by Hansen (Abh der Math-Phys Cl der Kon Sachs Ges der Wissensch 5:41-218, 1857). Based on the very same concept, Deprit (J Res Natl Bur Stand Sect B Math Sci 79B(1-2):1-15, 1975) proposed a formulation for orbit propagation. In this paper, similarities and differences with the theory carried out by Deprit are analyzed. Simultaneously, some improvements are introduced in the formulation, that lead to a more synthetic and better performing propagator. Also, the long-term effect of the oblateness of the primary is studied in terms of DROMO variables, and new numerical results are presented to evaluate the performance of the method.

  6. Partial Purification of the 5-Hydroxytryptamine-Reuptake System from Human Blood Platelets Using a Citalopram-Derived Affinity Resin

    NARCIS (Netherlands)

    Biessen, E.A.L.; Horn, A.S.; Robillard, G.T.

    1990-01-01

    This paper describes a procedure for the synthesis and application of a citalopram-derived affinity resin in purifying the 5HT-reuptake system from human blood platelets. A two-step scheme has been developed for partial purification, based on wheat germ agglutinin-lectin (WGA) affinity and citalopra

  7. Nonparaxial propagation of phase-flipped Gaussian beams

    Institute of Scientific and Technical Information of China (English)

    Gao Zeng-Hui; Lü Bai-Da

    2008-01-01

    This paper derives the closed-form expressions for nonparaxial phase flipped Gaussian (PFG) beams propagating in free space, through a knife edge and an aperture, which enable us to study nonparaxial propagation properties of PFG beams and to compare nonparaxial results with paraxial ones. It is found that the f parameter, offsetting distance of the knife edge and truncation parameter affect the nonparaxial beam propagation properties. Only under certain conditions the paraxial approximation is applicable. The results are illustrated by numerical examples.

  8. Affinity purification of aprotinin from bovine lung.

    Science.gov (United States)

    Xin, Yu; Liu, Lanhua; Chen, Beizhan; Zhang, Ling; Tong, Yanjun

    2015-05-01

    An affinity protocol for the purification of aprotinin from bovine lung was developed. To simulate the structure of sucrose octasulfate, a natural specific probe for aprotinin, the affinity ligand was composed of an acidic head and a hydrophobic stick, and was then linked with Sepharose. The sorbent was then subjected to adsorption analysis with pure aprotinin. The purification process consisted of one step of affinity chromatography and another step of ultrafiltration. Then purified aprotinin was subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis, trypsin inhibitor activity, gel-filtration, and thin-layer chromatography analysis. As calculated, the theoretical maximum adsorption (Qmax ) of the affinity sorbent was 25,476.0 ± 184.8 kallikrein inactivator unit/g wet gel; the dissociation constant of the complex "immobilized ligand-aprotinin" (Kd ) was 4.6 ± 0.1 kallikrein inactivator unit/mL. After the affinity separation of bovine lung aprotinin, reducing sodium dodecyl sulfate polyacrylamide gel electrophoresis analysis and gel-filtration chromatography revealed that the protein was a single polypeptide, and the purities were ∼ 97 and 100%, respectively; the purified peptide was also confirmed with aprotinin standard by gel-filtration chromatography and thin-layer chromatography. After the whole purification process, protein, and bioactivity recoveries were 2.2 and 92.6%, respectively; and the specific activity was up to 15,907.1 ± 10.2 kallikrein inactivator unit/mg. PMID:25677462

  9. Affinity chromatography based on a combinatorial strategy for rerythropoietin purification.

    Science.gov (United States)

    Martínez-Ceron, María C; Marani, Mariela M; Taulés, Marta; Etcheverrigaray, Marina; Albericio, Fernando; Cascone, Osvaldo; Camperi, Silvia A

    2011-05-01

    Small peptides containing fewer than 10 amino acids are promising ligand candidates with which to build affinity chromatographic systems for industrial protein purification. The application of combinatorial peptide synthesis strategies greatly facilitates the discovery of suitable ligands for any given protein of interest. Here we sought to identify peptide ligands with affinity for recombinant human erythropoietin (rhEPO), which is used for the treatment of anemia. A combinatorial library containing the octapeptides X-X-X-Phe-X-X-Ala-Gly, where X = Ala, Asp, Glu, Phe, His, Leu, Asn, Pro, Ser, or Thr, was synthesized on HMBA-ChemMatrix resin by the divide-couple-recombine method. For the library screening, rhEPO was coupled to either Texas Red or biotin. Fluorescent beads or beads showing a positive reaction with streptavidin-peroxidase were isolated. After cleavage, peptides were sequenced by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). Fifty-seven beads showed a positive reaction. Peptides showing more consensuses were synthesized, and their affinity to rhEPO was assessed using a plasma resonance biosensor. Dissociation constant values in the range of 1-18 μM were obtained. The best two peptides were immobilized on Sepharose, and the resultant chromatographic matrixes showed affinity for rhEPO with dissociation constant values between 1.8 and 2.7 μM. Chinese hamster ovary (CHO) cell culture supernatant was spiked with rhEPO, and the artificial mixture was loaded on Peptide-Sepharose columns. The rhEPO was recovered in the elution fraction with a yield of 90% and a purity of 95% and 97% for P1-Sepharose and P2-Sepharose, respectively. PMID:21495625

  10. Congophilicity (Congo red affinity) of different beta2-microglobulin conformations characterized by dye affinity capillary electrophoresis

    DEFF Research Database (Denmark)

    Heegaard, N H; Sen, J W; Nissen, Mogens Holst

    2000-01-01

    The amyloidogenic protein beta-microglobulin was characterized by affinity capillary electrophoresis (CE). CE could separate conformational variants of beta2-microglobulin and with the amyloid-specific dye Congo red as a buffer additive it was possible to measure different Congo red-affinities of...

  11. Lagrange-distributed approximating-functional approach to wave-packet propagation: Application to the time-independent wave-packet reactant-product decoupling method

    International Nuclear Information System (INIS)

    A connection is made between a recently introduced Lagrange-distributed approximating-functional and the Paley-Wiener sampling theorem. The Lagrange-distributed approximating-functional sampling is found to provide much superior results to that of Paley-Wiener sampling. The relations between discrete variable representation and Lagrange-distributed approximating functionals are discussed. The latter is used to provide an even spaced, interpolative grid representation of the Hamiltonian, in which the kinetic energy matrix has a banded, Toeplitz structure. In this paper we demonstrate that the Lagrange-distributed approximating-functional representation is an accurate and reliable representation for use in fast-Fourier-transform wave-packet propagation methods and apply it to the time-independent wave-packet reactant-product decoupling method, calculating state-to-state reaction probabilities for the two-dimensional (collinear) and three-dimensional (J=0) H+H2 reactions. The results are in very close agreement with those of previous calculations. We also discuss the connection between the distributed approximating-functional method and the existing mathematical formalism of moving least-squares theory. copyright 1998 The American Physical Society

  12. Application of isotope coded affinity tag (ICAT) analysis for the identification of differentially expressed proteins following infection of atlantic salmon (Salmo salar) with infectious hematopoietic necrosis virus (IHNV) or Renibacterium salmoninarum (BKD).

    Science.gov (United States)

    Booy, A T; Haddow, J D; Ohlund, L B; Hardie, D B; Olafson, R W

    2005-01-01

    Aquaculture and commercial fisheries worldwide suffer from significant economic loss due to diseases of net-pen reared fish. In British Columbia, infectious hematopoietic necrosis (IHN) and bacterial kidney disease (BKD) epidemics occur because there are currently no commercially available drugs or fully licensed vaccines to treat these diseases. With a better understanding of the molecular mechanisms underlying these diseases, this circumstance might be significantly improved. In the present study, we have used a proteomics approach in an effort to identify and quantitate differentially expressed proteins in the liver and kidneys of diseased and healthy Atlantic salmon (Salmo salar). Isotope coded affinity tagging (ICAT), 2D gel electrophoresis, and multidimensional liquid chromatography coupled to tandem mass spectrometry (2D-LC MS/MS) were used to identify hundreds of differentially expressed proteins. While the direct significance of changes in expression levels of many proteins remains to be elucidated, others appear to be more clearly related to the infectious process. Examples of the latter are discussed here and include, a natural killer cell enhancement factor (NKEF), procathepsin L, superoxide-producing NADPH oxidase and interferon-induced viral resistance protein Mx (IFI-Mx). PMID:15822907

  13. On Affine Fusion and the Phase Model

    Directory of Open Access Journals (Sweden)

    Mark A. Walton

    2012-11-01

    Full Text Available A brief review is given of the integrable realization of affine fusion discovered recently by Korff and Stroppel. They showed that the affine fusion of the su(n Wess-Zumino-Novikov-Witten (WZNW conformal field theories appears in a simple integrable system known as the phase model. The Yang-Baxter equation leads to the construction of commuting operators as Schur polynomials, with noncommuting hopping operators as arguments. The algebraic Bethe ansatz diagonalizes them, revealing a connection to the modular S matrix and fusion of the su(n WZNW model. The noncommutative Schur polynomials play roles similar to those of the primary field operators in the corresponding WZNW model. In particular, their 3-point functions are the su(n fusion multiplicities. We show here how the new phase model realization of affine fusion makes obvious the existence of threshold levels, and how it accommodates higher-genus fusion.

  14. On affine fusion and the phase model

    CERN Document Server

    Walton, Mark A

    2012-01-01

    A brief review is given of the integrable realization of affine fusion discovered recently by Korff and Stroppel. They showed that the affine fusion of the su(n) Wess-Zumino-Novikov-Witten (WZNW) conformal field theories appears in a simple integrable system known as the phase model. The algebraic Bethe ansatz constructs the commuting operators of the phase model as Schur polynomials, with non-commuting hopping operators as arguments. These non-commutative Schur polynomials play roles similar to those of the primary field operators in the corresponding WZNW model. In particular, their 3-point functions are the su(n) fusion multiplicities. We show here how the new phase model realization of affine fusion makes obvious the existence of threshold levels, and how it accommodates higher-genus fusion.

  15. Burst propagation in Texas Helimak

    Science.gov (United States)

    Pereira, F. A. C.; Toufen, D. L.; Guimarães-Filho, Z. O.; Caldas, I. L.; Gentle, K. W.

    2016-05-01

    We present investigations of extreme events (bursts) propagating in the Texas Helimak, a toroidal plasma device in which the radial electric field can be changed by application of bias. In the experiments analyzed, a large grid of Langmuir probes measuring ion saturation current fluctuations is used to study the burst propagation and its dependence on the applied bias voltage. We confirm previous results reported on the turbulence intermittency in the Texas Helimak, extending them to a larger radial interval with a density ranging from a uniform decay to an almost uniform value. For our analysis, we introduce an improved procedure, based on a multiprobe bidimensional conditional averaging method, to assure precise determination of burst statistical properties and their spatial profiles. We verify that intermittent bursts have properties that vary in the radial direction. The number of bursts depends on the radial position and on the applied bias voltage. On the other hand, the burst characteristic time and size do not depend on the applied bias voltage. The bias voltage modifies the vertical and radial burst velocity profiles differently. The burst velocity is smaller than the turbulence phase velocity in almost all the analyzed region.

  16. Affine Projection Algorithm Using Regressive Estimated Error

    OpenAIRE

    Zhang, Shu; Zhi, Yongfeng

    2011-01-01

    An affine projection algorithm using regressive estimated error (APA-REE) is presented in this paper. By redefining the iterated error of the affine projection algorithm (APA), a new algorithm is obtained, and it improves the adaptive filtering convergence rate. We analyze the iterated error signal and the stability for the APA-REE algorithm. The steady-state weights of the APA-REE algorithm are proved to be unbiased and consist. The simulation results show that the proposed algorithm has a f...

  17. Control and estimation of piecewise affine systems

    CERN Document Server

    Xu, Jun

    2014-01-01

    As a powerful tool to study nonlinear systems and hybrid systems, piecewise affine (PWA) systems have been widely applied to mechanical systems. Control and Estimation of Piecewise Affine Systems presents several research findings relating to the control and estimation of PWA systems in one unified view. Chapters in this title discuss stability results of PWA systems, using piecewise quadratic Lyapunov functions and piecewise homogeneous polynomial Lyapunov functions. Explicit necessary and sufficient conditions for the controllability and reachability of a class of PWA systems are

  18. Periodic cyclic homology of affine Hecke algebras

    CERN Document Server

    Solleveld, Maarten

    2009-01-01

    This is the author's PhD-thesis, which was written in 2006. The version posted here is identical to the printed one. Instead of an abstract, the short list of contents: Preface 5 1 Introduction 9 2 K-theory and cyclic type homology theories 13 3 Affine Hecke algebras 61 4 Reductive p-adic groups 103 5 Parameter deformations in affine Hecke algebras 129 6 Examples and calculations 169 A Crossed products 223 Bibliography 227 Index 237 Samenvatting 245 Curriculum vitae 253

  19. The Affine q-Schur algebra

    OpenAIRE

    Green, R. M.

    1997-01-01

    We introduce an analogue of the $q$-Schur algebra associated to Coxeter systems of type $\\hat A_{n-1}$. We give two constructions of this algebra. The first construction realizes the algebra as a certain endomorphism algebra arising from an affine Hecke algebra of type $\\hat A_{r-1}$, where $n \\geq r$. This generalizes the original $q$-Schur algebra as defined by Dipper and James, and the new algebra contains the ordinary $q$-Schur algebra and the affine Hecke algebra as subalgebras. Using th...

  20. Vegetative propagation of jojoba

    Energy Technology Data Exchange (ETDEWEB)

    Low, C.B.; Hackett, W.P.

    1981-03-01

    Development of jojoba as an economically viable crop requires improved methods of propagation and culture. Rooting experiments were performed on cutting material collected from wild jojoba plants. A striking seasonal fluctuation in rooting potential was found. Jojoba plants can be successfully propagated from stem cuttings made during spring, summer, and, to some extent, fall. Variability among jojoba plants may also play a role in rooting potential, although it is not as important as season. In general, the use of auxin (4,000 ppm indolebutyric acid) on jojoba cuttings during periods of high rooting potential promotes adventitious root formation, but during periods of low rooting potential it has no effect or is even slightly inhibitory. In the greenhouse, cutting-grown plants apparently reproductively matured sooner than those grown from seed. If this observation holds true for plants transplanted into the field, earlier fruit production by cutting--grown plants would mean earlier return of initial planting and maintenance costs.

  1. Refractive analysis of the human cornea through propagated fields

    OpenAIRE

    Illueca Contri, Carlos; Mas Candela, David; Pérez Rodríguez, Jorge; Pons Moreno, Álvaro Máximo; Artigas Verde, José María

    2000-01-01

    A new technique for analysing the optical quality of the human cornea is presented. Corneal maps are obtained through keratographies and then converted into phase maps. The propagated fields generated from this surface are plotted and studied. It is shown that any irregularity in the cornea affects the propagated field and the energy distribution at the focal plane. Simple applications are also indicated.

  2. Stochastic Expectation Propagation

    OpenAIRE

    Li, Yingzhen; Hernandez-Lobato, Jose Miguel; Turner, Richard E.

    2015-01-01

    Expectation propagation (EP) is a deterministic approximation algorithm that is often used to perform approximate Bayesian parameter learning. EP approximates the full intractable posterior distribution through a set of local approximations that are iteratively refined for each datapoint. EP can offer analytic and computational advantages over other approximations, such as Variational Inference (VI), and is the method of choice for a number of models. The local nature of EP appears to make it...

  3. Transionospheric Propagation Code (TIPC)

    Energy Technology Data Exchange (ETDEWEB)

    Roussel-Dupre, R.; Kelley, T.A.

    1990-10-01

    The Transionospheric Propagation Code is a computer program developed at Los Alamos National Lab to perform certain tasks related to the detection of vhf signals following propagation through the ionosphere. The code is written in Fortran 77, runs interactively and was designed to be as machine independent as possible. A menu format in which the user is prompted to supply appropriate parameters for a given task has been adopted for the input while the output is primarily in the form of graphics. The user has the option of selecting from five basic tasks, namely transionospheric propagation, signal filtering, signal processing, DTOA study, and DTOA uncertainty study. For the first task a specified signal is convolved against the impulse response function of the ionosphere to obtain the transionospheric signal. The user is given a choice of four analytic forms for the input pulse or of supplying a tabular form. The option of adding Gaussian-distributed white noise of spectral noise to the input signal is also provided. The deterministic ionosphere is characterized to first order in terms of a total electron content (TEC) along the propagation path. In addition, a scattering model parameterized in terms of a frequency coherence bandwidth is also available. In the second task, detection is simulated by convolving a given filter response against the transionospheric signal. The user is given a choice of a wideband filter or a narrowband Gaussian filter. It is also possible to input a filter response. The third task provides for quadrature detection, envelope detection, and three different techniques for time-tagging the arrival of the transionospheric signal at specified receivers. The latter algorithms can be used to determine a TEC and thus take out the effects of the ionosphere to first order. Task four allows the user to construct a table of delta-times-of-arrival (DTOAs) vs TECs for a specified pair of receivers.

  4. HIGH AMPLITUDE PROPAGATED CONTRACTIONS

    OpenAIRE

    Bharucha, Adil E.

    2012-01-01

    While most colonic motor activity is segmental and non-propulsive, colonic high amplitude propagated contractions (HAPC) can transfer colonic contents over long distances and often precede defecation. HAPC occur spontaneously, in response to pharmacological agents or colonic distention. In this issue of Neurogastroenterology and Motility, Rodriguez and colleagues report that anal relaxation during spontaneous and bisacodyl-induced HAPC exceeds anal relaxation during rectal distention in const...

  5. Infrared finite electron propagator

    International Nuclear Information System (INIS)

    We investigate the properties of a dressed electron which reduces, in a particular class of gauges, to the usual fermion. A one-loop calculation of the propagator is presented. We show explicitly that an infrared finite, multiplicative, mass shell renormalization is possible for this dressed electron, or, equivalently, for the usual fermion in the above-mentioned gauges. The results are in complete accord with previous conjectures. copyright 1997 The American Physical Society

  6. Lateral Casimir force between self-affine rough surfaces

    Science.gov (United States)

    Tajik, Fatemeh; Masoudi, Amir Ali; Khorrami, Mohammad

    2016-03-01

    The effect of self-affine roughness on the lateral Casimir force between two plates is studied using a perturbative expansion method. The PWS (pairwise summation) method is applicable only at lateral correlation lengths much larger than the separation between two plates. The effect of the roughness parameters on the lateral Casimir force is investigated, and it is seen that this effect is significant, enabling one to tailor roughness parameters so that to obtain the desirable Casimir force and increase the yield of micro- or nano-electromechanical devices based on the vacuum fluctuations.

  7. Development of an aptamer-based affinity purification method for vascular endothelial growth factor

    Directory of Open Access Journals (Sweden)

    Maren Lönne

    2015-12-01

    Full Text Available Since aptamers bind their targets with high affinity and specificity, they are promising alternative ligands in protein affinity purification. As aptamers are chemically synthesized oligonucleotides, they can be easily produced in large quantities regarding GMP conditions allowing their application in protein production for therapeutic purposes. Several advantages of aptamers compared to antibodies are described in general within this paper. Here, an aptamer directed against the human Vascular Endothelial Growth Factor (VEGF was used as affinity ligand for establishing a purification platform for VEGF in small scale. The aptamer was covalently immobilized on magnetic beads in a controlled orientation resulting in a functional active affinity matrix. Target binding was optimized by introduction of spacer molecules and variation of aptamer density. Further, salt-induced target elution was demonstrated as well as VEGF purification from a complex protein mixture proving the specificity of protein-aptamer binding.

  8. Propagators and topology

    Energy Technology Data Exchange (ETDEWEB)

    Maas, Axel [University of Graz, Institute of Physics, Graz (Austria)

    2015-03-01

    Two popular perspectives on the non-perturbative domain of Yang-Mills theories are either in terms of the gluons themselves or in terms of collective gluonic excitations, i.e. topological excitations. If both views are correct, then they are only two different representations of the same underlying physics. One possibility to investigate this connection is by the determination of gluon correlation functions in topological background fields, as created by the smearing of lattice configurations. This is performed here for the minimal Landau gauge gluon propagator, ghost propagator, and running coupling, both in momentum and position space for SU(2) Yang-Mills theory. The results show that the salient low-momentum features of the propagators are qualitatively retained under smearing at sufficiently small momenta, in agreement with an equivalence of both perspectives. However, the mid-momentum behavior is significantly affected. These results are also relevant for the construction of truncations in functional methods, as they provide hints on necessary properties to be retained in truncations. (orig.)

  9. Initial state propagators

    CERN Document Server

    Collins, Hael

    2013-01-01

    It is possible to define a general initial state for a quantum field by introducing a contribution to the action defined at an initial-time boundary. The propagator for this theory is composed of two parts, one associated with the free propagation of fields and another produced by the operators of this initial action. The derivation of this propagator is shown for the case of a translationally and rotationally invariant initial state. In addition to being able to treat more general states, these techniques can also be applied to effective field theories that start from an initial time. The eigenstates of a theory with interacting heavy and light fields are different from the eigenstates of the theory in the limit where the interactions vanish. Therefore, a product of states of the noninteracting heavy and light theories will usually contain excitations of the heavier state once the interactions are included. Such excitations appear as nonlocal effects in the effective theory, which are suppressed by powers of...

  10. Propagating waves along spicules

    CERN Document Server

    Okamoto, Takenori J

    2011-01-01

    Alfv\\'enic waves are thought to play an important role in coronal heating and acceleration of solar wind. Here we investigated the statistical properties of Alfv\\'enic waves along spicules (jets that protrude into the corona) in a polar coronal hole using high cadence observations of the Solar Optical Telescope (SOT) onboard \\emph{Hinode}. We developed a technique for the automated detection of spicules and high-frequency waves. We detected 89 spicules, and found: (1) a mix of upward propagating, downward propagating, as well as standing waves (occurrence rates of 59%, 21%, and 20%, respectively). (2) The phase speed gradually increases with height. (3) Upward waves dominant at lower altitudes, standing waves at higher altitudes. (4) Standing waves dominant in the early and late phases of each spicule, while upward waves were dominant in the middle phase. (5) In some spicules, we find waves propagating upward (from the bottom) and downward (from the top) to form a standing wave in the middle of the spicule. (...

  11. The parabolic equation method for outdoor sound propagation

    DEFF Research Database (Denmark)

    Arranz, Marta Galindo

    The parabolic equation method is a versatile tool for outdoor sound propagation. The present study has focused on the Cranck-Nicolson type Parabolic Equation method (CNPE). Three different applications of the CNPE method have been investigated. The first two applications study variations of the g......The parabolic equation method is a versatile tool for outdoor sound propagation. The present study has focused on the Cranck-Nicolson type Parabolic Equation method (CNPE). Three different applications of the CNPE method have been investigated. The first two applications study variations...... of the ground in a homogeneous atmosphere. Propagation of sound above a mixed impedance ground and up-slope sound propagation is investigated. In the third application the influence of the atmosphere is studied, characterized and implemented in the CNPE-model. The refraction of the sound due to the wind...... and temperature gradients and the scattering due to the turbulence of the atmosphere are taken into account in the calculations....

  12. Contribution to the determination of the double angular and energy differential neutron albedo. Application to the propagation in lacunar medium; Contribution a la determination de l'albedo doublement differentiel en angle et en energie des neutrons. Application a la propagation dans les milieux lacunaires

    Energy Technology Data Exchange (ETDEWEB)

    Litaize, O

    2000-07-01

    The goal of this thesis is to study the neutron propagation by reflection from lacunar medium interfaces. The most efficient method to calculate this type of propagation is to use the concept of albedo. Actual version of NARCISSE code uses a simple formulation of angular differential albedos and so, can only treat single reflections. Multiple reflections treatment needs the knowledge of neutron spectrum after reflection. This energetic information is contained in double angular and energy differential albedos. The first step of this study consists to generate these albedos for various materials. Several methods have been tested and the Monte Carlo method was retained. A new estimator has been developed and validated in the Mote Carlo transport code TRIPOLI-4. It computes, during the simulation of the neutron history, the angular and energy reflection probability at each collision site. The second step consists to generate an interpolation scheme and albedo libraries for various materials. A new version of NARCISSE was developed to use these libraries and the interpolation module. Spectrum and dose rates comparisons were made between codes to validate these albedos. The neutron propagation by multiple reflections can be studied now, by using this new version of Narcisse. (author)

  13. Preparation of Novel Magnetic Dextran Affinity Adsorbents and Their Application to Purify Urokinase%新型磁性葡聚糖亲和吸附剂的制备及在尿激酶纯化中的应用

    Institute of Scientific and Technical Information of China (English)

    董聿生; 梁峰; 余向阳; 郭立安; 常建华

    2001-01-01

    采用反相悬浮包埋技术合成多分散的粒径在50目~300目的磁性葡聚糖微球(MDMS)。MDMS经环氧氯丙烷活化后,分别键合氨基乙酸、6-氨基己酸和乙二胺作为间隔臂,以碳二亚胺为偶联剂,分别偶联L-精氨酸甲酯、对氨基苯甲脒和胍基己酸配体,制备了5种磁性亲和吸附剂。研究了分散介质及其粘度和密度、有机相和水相的体积比、表面活性剂的用量、搅拌速度等因素对微球制备的影响。将所制备的磁性亲和吸附剂应用于尿激酶粗品的纯化,并讨论了偶联试剂和配体对尿激酶纯化效果的影响。通过测定,尿激酶的活性回收率为40.0%~60.7%、纯化倍数为14.9~32.8、吸附容量为89mg/L~121mg/L。%The reverse phase suspension and embedment technique were adopted to pre pare magnetic dextran microsphere (MDMS). The dispersion medium was mixture of some organic solvents. Span-80 was used as stabilizer. The aqueous dextran wit h magnetic fluid was suspended in dispersion medium with epichlorohydrin as cross -linking reagent. The mixture was stirred for 30 minutes at room temperature a nd then he ated at 70 ℃ for 4 hours, MDMS was thus obtained. MDMS was activated by epich lor ohydrin on which 6-aminohexanoic acid, glycine or ethylene diamine was bonded a s spacers. Then it was coupled with p-aminobenzamide, L-arginine methy l ester or guanidohexanoic acid and five magnetic affinity adsorbents were prepared. The M D MS was polydisperse particles with the size of 50-300 meshes and the con tent of Fe3O4 was about 6.2 per cent in the MDMS. Influence of some parameters suc h as visc osity and density of organic phase, the volume ratio of organic and aqueous phas e, the quantity of surfactant and stirring speed on preparing MDMS was studied. Magnetic affinity adsorbents were used to purify crude urokinase in a batch mode and the effect of coupling reagents and ligands on results of purification was disc

  14. Crossing Chris: Some Markerian Affinities

    Directory of Open Access Journals (Sweden)

    Adrian Martin

    2010-01-01

    -pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;}

    Abstract (E: This essay creatively explores a group of artists, writers, and other special individuals whose work or life story can be described as having an intriguing affinity with the protean career of Chris Marker. Avoiding the ‘usual suspects’ (such as Godard or Sebald, it discusses gossip columnist Milt Machlin, record collector Harry Smith, painter Gianfranco Baruchello, writer-filmmaker Edgardo Cozarinsky, and several others. From this constellation, a particular view of Markerian poetics emerges, touching upon the meanings of anonymity, storytelling, history and archiving.

     

    Abstract (F: Cet essai brosse de manière créative le portrait d’un groupe d'artistes, d'écrivains et d'autres personnes particulières dont le travail ou la biographie peuvent être décrits comme montrant une étrange mais certaine connivence avec la carrière protéiforme de Chris Marker. Evitant les lieux communs (comme Godard ou Sebald, cet article trace des références moins attendues :

  15. Breeding vegetatively propagated horticultural crops

    OpenAIRE

    Dilson Antônio Bisognin

    2011-01-01

    Horticulture is an important part of agriculture with many important crops being vegetatively propagated. Theobjectives of this work were to discuss some of the most important characteristics of vegetatively propagated crops and the breedingstrategies to develop and propagate new cultivars. Vegetative propagation enables to fix favorable combinations of important traits,very specific chemical compositions, superior genetic variance interactions and high levels of heterozygosity. Breeding new ...

  16. Progress in front propagation research

    Energy Technology Data Exchange (ETDEWEB)

    Fort, Joaquim [Departament de Fisica, Campus de Montilivi, Universitat de Girona, 17071 Girona, Catalonia (Spain); Pujol, Toni [Departament de Mecanica, Campus de Montilivi, Universitat de Girona, 17071 Girona, Catalonia (Spain)

    2008-08-15

    We review the progress in the field of front propagation in recent years. We survey many physical, biophysical and cross-disciplinary applications, including reduced-variable models of combustion flames, Reid's paradox of rapid forest range expansions, the European colonization of North America during the 19th century, the Neolithic transition in Europe from 13 000 to 5000 years ago, the description of subsistence boundaries, the formation of cultural boundaries, the spread of genetic mutations, theory and experiments on virus infections, models of cancer tumors, etc. Recent theoretical advances are unified in a single framework, encompassing very diverse systems such as those with biased random walks, distributed delays, sequential reaction and dispersion, cohabitation models, age structure and systems with several interacting species. Directions for future progress are outlined.

  17. Progress in front propagation research

    Science.gov (United States)

    Fort, Joaquim; Pujol, Toni

    2008-08-01

    We review the progress in the field of front propagation in recent years. We survey many physical, biophysical and cross-disciplinary applications, including reduced-variable models of combustion flames, Reid's paradox of rapid forest range expansions, the European colonization of North America during the 19th century, the Neolithic transition in Europe from 13 000 to 5000 years ago, the description of subsistence boundaries, the formation of cultural boundaries, the spread of genetic mutations, theory and experiments on virus infections, models of cancer tumors, etc. Recent theoretical advances are unified in a single framework, encompassing very diverse systems such as those with biased random walks, distributed delays, sequential reaction and dispersion, cohabitation models, age structure and systems with several interacting species. Directions for future progress are outlined.

  18. Progress in front propagation research

    International Nuclear Information System (INIS)

    We review the progress in the field of front propagation in recent years. We survey many physical, biophysical and cross-disciplinary applications, including reduced-variable models of combustion flames, Reid's paradox of rapid forest range expansions, the European colonization of North America during the 19th century, the Neolithic transition in Europe from 13 000 to 5000 years ago, the description of subsistence boundaries, the formation of cultural boundaries, the spread of genetic mutations, theory and experiments on virus infections, models of cancer tumors, etc. Recent theoretical advances are unified in a single framework, encompassing very diverse systems such as those with biased random walks, distributed delays, sequential reaction and dispersion, cohabitation models, age structure and systems with several interacting species. Directions for future progress are outlined

  19. Backward Propagation of Otoacoustic Emissions

    Institute of Scientific and Technical Information of China (English)

    HE Wenxuan; REN Tianying

    2006-01-01

    Normal mammalian ears not only detect but also generate sounds. The ear-generated sounds, I.e., otoacoustic emissions (OAEs), can be measured in the external ear canal using a tiny sensitive microphone. In spite of wide applications of OAEs in diagnosis of hearing disorders and in studies of cochlear functions, the question of how the cochlea emits sounds remains unclear. The current dominating theory is that the OAE reaches the cochlear base through a backward traveling wave. However, recently published works, including experimental data on the spatial pattern ofbasilar membrane vibrations at the emission frequency, demonstrated only forward traveling waves and no signs of backward traveling waves. These new findings indicate that the cochlea emits sounds through cochlear fluids as compression waves rather than through the basilar membrane as backward traveling waves. This article reviews different mechanisms of the backward propagation of OAEs and summarizes recent experimental results.

  20. Detection of subcritical crack propagation for concrete dams

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Subcritical propagation of cracks is a warning sign of fracture.If such propagation is detected at an early stage,timely maintenance measures can be taken to prevent the failure of structures.To detect the subcritical propagation of a crack,the crack needs to be monitored continuously in a long term, which is not realistic under certain conditions.However,cracks in concrete dams can be monitored continuously by dam monitoring to offer possible detection for subcritical propagation.In this paper, with measured crack openings from dam monitoring,a state equation for characterizing crack development is established based on the grey system theory.The relation between the stability of the equation and the subcritical crack propagation is investigated,then a criterion is proposed for detecting subcritical propagation.An example demonstrates the validity of the criterion and its potential for practical application.

  1. Engineering an antibody with picomolar affinity to DOTA chelates of multiple radionuclides for pretargeted radioimmunotherapy and imaging

    Energy Technology Data Exchange (ETDEWEB)

    Orcutt, Kelly Davis; Slusarczyk, Adrian L. [Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Cieslewicz, Maryelise [Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Ruiz-Yi, Benjamin [Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Bhushan, Kumar R. [Division of Hematology/Oncology, Beth Israel Deaconess Medical Center, Boston, MA 02215 (United States); Frangioni, John V. [Division of Hematology/Oncology, Beth Israel Deaconess Medical Center, Boston, MA 02215 (United States); Department of Radiology, Beth Israel Deaconess Medical Center, Boston, MA 02215 (United States); Wittrup, K. Dane, E-mail: wittrup@mit.ed [Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States)

    2011-02-15

    Introduction: In pretargeted radioimmunotherapy (PRIT), a bifunctional antibody is administered and allowed to pre-localize to tumor cells. Subsequently, a chelated radionuclide is administered and captured by cell-bound antibody while unbound hapten clears rapidly from the body. We aim to engineer high-affinity binders to 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid (DOTA) chelates for use in PRIT applications. Methods: We mathematically modeled antibody and hapten pharmacokinetics to analyze hapten tumor retention as a function of hapten binding affinity. Motivated by model predictions, we used directed evolution and yeast surface display to affinity mature the 2D12.5 antibody to DOTA, reformatted as a single chain variable fragment (scFv). Results: Modeling predicts that for high antigen density and saturating bsAb dose, a hapten-binding affinity of 100 pM is needed for near-maximal hapten retention. We affinity matured 2D12.5 with an initial binding constant of about 10 nM to DOTA-yttrium chelates. Affinity maturation resulted in a 1000-fold affinity improvement to biotinylated DOTA-yttrium, yielding an 8.2{+-}1.9 picomolar binder. The high-affinity scFv binds DOTA complexes of lutetium and gadolinium with similar picomolar affinity and indium chelates with low nanomolar affinity. When engineered into a bispecific antibody construct targeting carcinoembryonic antigen, pretargeted high-affinity scFv results in significantly higher tumor retention of a {sup 111}In-DOTA hapten compared to pretargeted wild-type scFv in a xenograft mouse model. Conclusions: We have engineered a versatile, high-affinity, DOTA-chelate-binding scFv. We anticipate it will prove useful in developing pretargeted imaging and therapy protocols to exploit the potential of a variety of radiometals.

  2. Engineering an antibody with picomolar affinity to DOTA chelates of multiple radionuclides for pretargeted radioimmunotherapy and imaging

    International Nuclear Information System (INIS)

    Introduction: In pretargeted radioimmunotherapy (PRIT), a bifunctional antibody is administered and allowed to pre-localize to tumor cells. Subsequently, a chelated radionuclide is administered and captured by cell-bound antibody while unbound hapten clears rapidly from the body. We aim to engineer high-affinity binders to 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid (DOTA) chelates for use in PRIT applications. Methods: We mathematically modeled antibody and hapten pharmacokinetics to analyze hapten tumor retention as a function of hapten binding affinity. Motivated by model predictions, we used directed evolution and yeast surface display to affinity mature the 2D12.5 antibody to DOTA, reformatted as a single chain variable fragment (scFv). Results: Modeling predicts that for high antigen density and saturating bsAb dose, a hapten-binding affinity of 100 pM is needed for near-maximal hapten retention. We affinity matured 2D12.5 with an initial binding constant of about 10 nM to DOTA-yttrium chelates. Affinity maturation resulted in a 1000-fold affinity improvement to biotinylated DOTA-yttrium, yielding an 8.2±1.9 picomolar binder. The high-affinity scFv binds DOTA complexes of lutetium and gadolinium with similar picomolar affinity and indium chelates with low nanomolar affinity. When engineered into a bispecific antibody construct targeting carcinoembryonic antigen, pretargeted high-affinity scFv results in significantly higher tumor retention of a 111In-DOTA hapten compared to pretargeted wild-type scFv in a xenograft mouse model. Conclusions: We have engineered a versatile, high-affinity, DOTA-chelate-binding scFv. We anticipate it will prove useful in developing pretargeted imaging and therapy protocols to exploit the potential of a variety of radiometals.

  3. General super Virasoro construction on affine G

    International Nuclear Information System (INIS)

    We consider a bosonic current algebra and a theory of free fermions and construct a general N = 1 super Virasoro current algebra. We obtain a master-set of equations which comprises the bosonic master equation for general Virasoro construction on affine G. As an illustration we study the case of the group SU(2). (author). 13 refs

  4. Affinely Recursive Functions and Neural Networks

    Czech Academy of Sciences Publication Activity Database

    Kůrková, Věra; Kainen, P.C.

    Atlanta : Georgia Institute of Technology, 1994 - ( Ames , W.), s. 776-779 [IMACS World Congress /14./. Atlanta (US), 11.07.1994-15.07.1994] R&D Projects: GA AV ČR IA23057; GA ČR GA201/93/0427 Keywords : neural networks * affinely recursive functions

  5. Colliding waves in metric-affine gravity

    CERN Document Server

    García, A; Macías, A; Mielke, E W; Socorro, J; García, Alberto; Lämmerzahl, Claus; Macías, Alfredo; Mielke, Eckehard W.; Socorro, José

    1998-01-01

    We generalize the formulation of the colliding gravitational waves to metric-affine theories and present an example of such kind of exact solutions. The plane waves are equipped with five symmetries and the resulting geometry after the collision possesses two spacelike Killing vectors.

  6. Estimation and propagation of volcanic source parameter uncertainty in an ash transport and dispersal model: application to the Eyjafjallajokull plume of 14-16 April 2010

    Science.gov (United States)

    Bursik, Marcus; Jones, Matthew; Carn, Simon; Dean, Ken; Patra, Abani; Pavolonis, Michael; Pitman, E. Bruce; Singh, Tarunraj; Singla, Puneet; Webley, Peter; Bjornsson, Halldor; Ripepe, Maurizio

    2012-12-01

    Data on source conditions for the 14 April 2010 paroxysmal phase of the Eyjafjallajökull eruption, Iceland, have been used as inputs to a trajectory-based eruption column model, bent. This model has in turn been adapted to generate output suitable as input to the volcanic ash transport and dispersal model, puff, which was used to propagate the paroxysmal ash cloud toward and over Europe over the following days. Some of the source parameters, specifically vent radius, vent source velocity, mean grain size of ejecta, and standard deviation of ejecta grain size have been assigned probability distributions based on our lack of knowledge of exact conditions at the source. These probability distributions for the input variables have been sampled in a Monte Carlo fashion using a technique that yields what we herein call the polynomial chaos quadrature weighted estimate (PCQWE) of output parameters from the ash transport and dispersal model. The advantage of PCQWE over Monte Carlo is that since it intelligently samples the input parameter space, fewer model runs are needed to yield estimates of moments and probabilities for the output variables. At each of these sample points for the input variables, a model run is performed. Output moments and probabilities are then computed by properly summing the weighted values of the output parameters of interest. Use of a computational eruption column model coupled with known weather conditions as given by radiosonde data gathered near the vent allows us to estimate that initial mass eruption rate on 14 April 2010 may have been as high as 108 kg/s and was almost certainly above 107 kg/s. This estimate is consistent with the probabilistic envelope computed by PCQWE for the downwind plume. The results furthermore show that statistical moments and probabilities can be computed in a reasonable time by using 94 = 6,561 PCQWE model runs as opposed to millions of model runs that might be required by standard Monte Carlo techniques. The

  7. Crack propagation modeling using Peridynamic theory

    Science.gov (United States)

    Hafezi, M. H.; Alebrahim, R.; Kundu, T.

    2016-04-01

    Crack propagation and branching are modeled using nonlocal peridynamic theory. One major advantage of this nonlocal theory based analysis tool is the unifying approach towards material behavior modeling - irrespective of whether the crack is formed in the material or not. No separate damage law is needed for crack initiation and propagation. This theory overcomes the weaknesses of existing continuum mechanics based numerical tools (e.g. FEM, XFEM etc.) for identifying fracture modes and does not require any simplifying assumptions. Cracks grow autonomously and not necessarily along a prescribed path. However, in some special situations such as in case of ductile fracture, the damage evolution and failure depend on parameters characterizing the local stress state instead of peridynamic damage modeling technique developed for brittle fracture. For brittle fracture modeling the bond is simply broken when the failure criterion is satisfied. This simulation helps us to design more reliable modeling tool for crack propagation and branching in both brittle and ductile materials. Peridynamic analysis has been found to be very demanding computationally, particularly for real-world structures (e.g. vehicles, aircrafts, etc.). It also requires a very expensive visualization process. The goal of this paper is to bring awareness to researchers the impact of this cutting-edge simulation tool for a better understanding of the cracked material response. A computer code has been developed to implement the peridynamic theory based modeling tool for two-dimensional analysis. A good agreement between our predictions and previously published results is observed. Some interesting new results that have not been reported earlier by others are also obtained and presented in this paper. The final objective of this investigation is to increase the mechanics knowledge of self-similar and self-affine cracks.

  8. Stochastic model in microwave propagation

    International Nuclear Information System (INIS)

    Further experimental results of delay time in microwave propagation are reported in the presence of a lossy medium (wood). The measurements show that the presence of a lossy medium makes the propagation slightly superluminal. The results are interpreted on the basis of a stochastic (or path integral) model, showing how this model is able to describe each kind of physical system in which multi-path trajectories are present. -- Highlights: ► We present new experimental results on electromagnetic “anomalous” propagation. ► We apply a path integral theoretical model to wave propagation. ► Stochastic processes and multi-path trajectories in propagation are considered.

  9. PIV uncertainty propagation

    Science.gov (United States)

    Sciacchitano, Andrea; Wieneke, Bernhard

    2016-08-01

    This paper discusses the propagation of the instantaneous uncertainty of PIV measurements to statistical and instantaneous quantities of interest derived from the velocity field. The expression of the uncertainty of vorticity, velocity divergence, mean value and Reynolds stresses is derived. It is shown that the uncertainty of vorticity and velocity divergence requires the knowledge of the spatial correlation between the error of the x and y particle image displacement, which depends upon the measurement spatial resolution. The uncertainty of statistical quantities is often dominated by the random uncertainty due to the finite sample size and decreases with the square root of the effective number of independent samples. Monte Carlo simulations are conducted to assess the accuracy of the uncertainty propagation formulae. Furthermore, three experimental assessments are carried out. In the first experiment, a turntable is used to simulate a rigid rotation flow field. The estimated uncertainty of the vorticity is compared with the actual vorticity error root-mean-square, with differences between the two quantities within 5–10% for different interrogation window sizes and overlap factors. A turbulent jet flow is investigated in the second experimental assessment. The reference velocity, which is used to compute the reference value of the instantaneous flow properties of interest, is obtained with an auxiliary PIV system, which features a higher dynamic range than the measurement system. Finally, the uncertainty quantification of statistical quantities is assessed via PIV measurements in a cavity flow. The comparison between estimated uncertainty and actual error demonstrates the accuracy of the proposed uncertainty propagation methodology.

  10. Liouvillian propagators, Riccati equation and differential Galois theory

    International Nuclear Information System (INIS)

    In this paper a Galoisian approach to building propagators through Riccati equations is presented. The main result corresponds to the relationship between the Galois integrability of the linear Schrödinger equation and the virtual solvability of the differential Galois group of its associated characteristic equation. As the main application of this approach we solve Ince’s differential equation through the Hamiltonian algebrization procedure and the Kovacic algorithm to find the propagator for a generalized harmonic oscillator. This propagator has applications which describe the process of degenerate parametric amplification in quantum optics and light propagation in a nonlinear anisotropic waveguide. Toy models of propagators inspired by integrable Riccati equations and integrable characteristic equations are also presented. (paper)

  11. Sequential Back—Propagation

    Institute of Scientific and Technical Information of China (English)

    王晖; 刘大有; 等

    1994-01-01

    In this paper we consider the problem of sequential processing and present a sequential model based on the back-propagation algorithm.This model is intended to deal with intrinsically sequential problems,such as word recognition,speech recognition,natural language understanding.This model can be used to train a network to learn the sequence of input patterns,in a fixed order or a random order.Besides,this model is open- and partial-associative,characterized as “resognizing while accumulating”, which, as we argue, is mental cognition process oriented.

  12. Laser propagation code study

    OpenAIRE

    Rockower, Edward B.

    1985-01-01

    A number of laser propagation codes have been assessed as to their suitability for modeling Army High Energy Laser (HEL) weapons used in an anti- sensor mode. We identify a number of areas in which systems analysis HEL codes are deficient. Most notably, available HEL scaling law codes model the laser aperture as circular, possibly with a fixed (e.g. 10%) obscuration. However, most HELs have rectangular apertures with up to 30% obscuration. We present a beam-quality/aperture shape scaling rela...

  13. Temporal scaling in information propagation

    Science.gov (United States)

    Huang, Junming; Li, Chao; Wang, Wen-Qiang; Shen, Hua-Wei; Li, Guojie; Cheng, Xue-Qi

    2014-06-01

    For the study of information propagation, one fundamental problem is uncovering universal laws governing the dynamics of information propagation. This problem, from the microscopic perspective, is formulated as estimating the propagation probability that a piece of information propagates from one individual to another. Such a propagation probability generally depends on two major classes of factors: the intrinsic attractiveness of information and the interactions between individuals. Despite the fact that the temporal effect of attractiveness is widely studied, temporal laws underlying individual interactions remain unclear, causing inaccurate prediction of information propagation on evolving social networks. In this report, we empirically study the dynamics of information propagation, using the dataset from a population-scale social media website. We discover a temporal scaling in information propagation: the probability a message propagates between two individuals decays with the length of time latency since their latest interaction, obeying a power-law rule. Leveraging the scaling law, we further propose a temporal model to estimate future propagation probabilities between individuals, reducing the error rate of information propagation prediction from 6.7% to 2.6% and improving viral marketing with 9.7% incremental customers.

  14. Prediction of tides using back-propagation neural networks

    Digital Repository Service at National Institute of Oceanography (India)

    Mandal, S.

    Prediction of tides is very much essential for human activities and to reduce the construction cost in marine environment. This paper presents an application of the artificial neural network with back-propagation procedures for accurate prediction...

  15. Validity of Parametrized Quark Propagator

    Institute of Scientific and Technical Information of China (English)

    ZHU Ji-Zhen; ZHOU Li-Juan; MA Wei-Xing

    2005-01-01

    Based on an extensively study of the Dyson-Schwinger equations for a fully dressed quark propagator in the "rainbow" approximation, a parametrized fully dressed quark propagator is proposed in this paper. The parametrized propagator describes a confining quark propagator in hadron since it is analytic everywhere in complex p2-plane and has no Lemmann representation. The validity of the new propagator is discussed by comparing its predictions on selfenergy functions Af(p2), Bf(p2) and effective mass Mf(p2) of quark with flavor f to their corresponding theoretical results produced by Dyson-Schwinger equations. Our comparison shows that the parametrized quark propagator is a good approximation to the fully dressed quark propagator given by the solutions of Dyson-Schwinger equations in the rainbow approximation and is convenient to use in any theoretical calculations.

  16. Validity of Parametrized Quark Propagator

    Institute of Scientific and Technical Information of China (English)

    ZHUJi-Zhen; ZHOULi-Juan; MAWei-Xing

    2005-01-01

    Based on an extensively study of the Dyson-Schwinger equations for a fully dressed quark propagator in the “rainbow”approximation, a parametrized fully dressed quark propagator is proposed in this paper. The parametrized propagator describes a confining quark propagator in hadron since it is analytic everywhere in complex p2-plane and has no Lemmann representation. The validity of the new propagator is discussed by comparing its predictions on selfenergy functions A/(p2), Bl(p2) and effective mass M$(p2) of quark with flavor f to their corresponding theoretical results produced by Dyson-Schwinger equations. Our comparison shows that the parametrized quark propagator is a good approximation to the fully dressed quark propagator given by the solutions of Dyson-Schwinger equations in the rainbow approximation and is convenient to use in any theoretical calculations.

  17. Tuning the interaction between propagating and localized surface plasmons for surface enhanced Raman scattering in water for biomedical and environmental applications

    International Nuclear Information System (INIS)

    With a view to biomedical and environmental applications, we investigate the plasmonic properties of a rectangular gold nanodisk array in water to boost surface enhanced Raman scattering (SERS) effects. To control the resonance wavelengths of the surface plasmon polariton and the localized surface plasmon, their dependence on the array period and diameter in water is studied in detail using a finite difference time domain method. A good agreement is obtained between calculated resonant wavelengths and those of gold nanodisk arrays fabricated using electron beam lithography. For the optimized structure, a SERS enhancement factor of 7.8 × 107 is achieved in water experimentally.

  18. Linear connections with propagating spin-3 field in gravity

    CERN Document Server

    Baekler, P; Hehl, F W; Baekler, Peter; Boulanger, Nicolas; Hehl, Friedrich W.

    2006-01-01

    We show that Fronsdal's Lagrangian for a free massless spin-3 gauge field in Minkowski spacetime is contained in a general Yang--Mills-like Lagrangian of metric-affine gravity (MAG), the gauge theory of the general affine group in the presence of a metric. Due to the geometric character of MAG, this can best be seen by using Vasiliev's frame formalism for higher-spin gauge fields in which the spin-3 frame is identified with the tracefree nonmetricity one-form associated with the shear generators of GL(n,R). Furthermore, for specific gravitational gauge models in the framework of full nonlinear MAG, exact solutions are constructed, featuring propagating massless and massive spin-3 fields.

  19. Propagation of an ultra intense laser pulse in an under dense plasma: production of quasi monoenergetic electron beams and development of applications

    International Nuclear Information System (INIS)

    This experimental study concerns the generation of electron beams with original properties. These electrons beams originate from the interaction of an ultra-intense and short laser pulse with a gas jet. Previously, these electron beams had a large divergence and a broad spectrum. A major improvement in this field was achieved when an electron beam with low divergence (10 mrad) and a peaked spectrum (170 MeV) was observed during this thesis, using a new single shot electron spectrometer. A parametric study of the interaction allowed to observe the evolution of the electron beam. Experiments have been carried out to deepen the characterization of the electron beam. The observation of transition radiation generated by the electrons at an interface shows that the electron beam interacts with the laser pulse during the acceleration. Radial oscillations of the electron beam around the laser axis, named betatron oscillations, were also observed on the electron spectra. Such a quasi-monoenergetic spectrum is essential for many applications. In order to justify the interest of this electron beam, several applications are presented: a sub-milli-metric gamma-ray radiography of dense objects, a dose profile of the electron beam comparable to present capabilities of photon sources for radiotherapy, a very short temporal profile useful for water radiolysis and the generation of a bright X-ray source with low divergence. (author)

  20. Application of Monte Carlo techniques for propagation of cross section uncertainties to actinide inventory in ADS transmuters: comparison with sensitivity analysis

    International Nuclear Information System (INIS)

    A comprehensive study is performed in order to evaluate the impact of activation cross section uncertainties on the actinide composition of the irradiated fuel in representative ADS (Accelerator Driven System) irradiation scenarios. Some of the most recent sources/compilations of uncertainty data are used, and the results obtained from them compared. The ANL covariance matrices are taken as reference data for the calculations. The complete set of cross section uncertainties provided in the EAF2005 data library are also used for comparison purposes. In this study, the inventory code ACAB is used to analyze the following questions: impact of different correlation structures using fixed uncertainties/variances; effect of the irradiation time/burn-up on the concentration uncertainties; and applicability of Monte Carlo (MC) and sensitivity-uncertainty (SU) approaches for all the range of burn-up/irradiation times of interest in ADS designs. When comparing results of calculations using ANL versus EAR2005/UN uncertainty data, we found very significant differences in the concentration uncertainties. The applicability of both MC and SU approaches is found acceptable to deal with all the range of irradiation times

  1. Assessment of Solvated Interaction Energy Function for Ranking Antibody-Antigen Binding Affinities.

    Science.gov (United States)

    Sulea, Traian; Vivcharuk, Victor; Corbeil, Christopher R; Deprez, Christophe; Purisima, Enrico O

    2016-07-25

    Affinity modulation of antibodies and antibody fragments of therapeutic value is often required in order to improve their clinical efficacies. Virtual affinity maturation has the potential to quickly focus on the critical hotspot residues without the combinatorial explosion problem of conventional display and library approaches. However, this requires a binding affinity scoring function that is capable of ranking single-point mutations of a starting antibody. We focus here on assessing the solvated interaction energy (SIE) function that was originally developed for and is widely applied to scoring of protein-ligand binding affinities. To this end, we assembled a structure-function data set called Single-Point Mutant Antibody Binding (SiPMAB) comprising several antibody-antigen systems suitable for this assessment, i.e., based on high-resolution crystal structures for the parent antibodies and coupled with high-quality binding affinity measurements for sets of single-point antibody mutants in each system. Using this data set, we tested the SIE function with several mutation protocols based on the popular methods SCWRL, Rosetta, and FoldX. We found that the SIE function coupled with a protocol limited to sampling only the mutated side chain can reasonably predict relative binding affinities with a Spearman rank-order correlation coefficient of about 0.6, outperforming more aggressive sampling protocols. Importantly, this performance is maintained for each of the seven system-specific component subsets as well as for other relevant subsets including non-alanine and charge-altering mutations. The transferability and enrichment in affinity-improving mutants can be further enhanced using consensus ranking over multiple methods, including the SIE, Talaris, and FOLDEF energy functions. The knowledge gained from this study can lead to successful prospective applications of virtual affinity maturation. PMID:27367467

  2. Direct numerical simulation of two-phases turbulent combustion: application to study of propagation and structure of flames; Simulation numerique directe de la combustion turbulente diphasique: application a l'etude de la propagation et de la structure des flammes

    Energy Technology Data Exchange (ETDEWEB)

    Canneviere, K.

    2003-12-15

    This work is devoted to the study of the propagation and the structure of two-phases turbulent flames. To this end, Direct Numerical Simulations (DNS) are used. First, numerical systems for two-phases flow simulations is presented along with a specific chemical model. Then, a study of laminar spray flames is carried out. An analytical study related to the dynamics of evaporation of droplets is first proposed where the influence on the equivalence ratio of the ratio between the heating delay of the droplet and the evaporation delay is detailed. The simulation of a propagating flame through a cloud of droplets is carried out and a pulsating behavior is highlighted. A study of these flames according to the topology of liquid fuel enabled us to characterize a double flame structure composed of a premixed flame and a diffusion flame. Our last study is devoted to spray turbulent flames. Two-phase combustion of turbulent jets has been simulated. By varying the spray injection parameters (density, equivalence ratio), a database has been generated. This database allowed us to describe local and global flame regimes appearing in the combustion of sprays. They have been categorized in four main structures: open and closed external regime, group combustion and mixed combustion. Eventually, a combustion diagram has been developed. It involves the spray vaporization time, the mean inter-space between droplets or group of droplets and eventually the injected equivalence ratio. (author)

  3. Deep tissue fluorescence resonance energy transfer imaging and the application of the Bethe-Salpeter equation to non-diffusive wave propagation

    Science.gov (United States)

    Gaind, Vaibhav

    Fluorescence resonance energy transfer (FRET) has found many applications in in vitro imaging as an indicator of molecular activity. However, till now, in vivo FRET imaging has been restricted to near-surface multiphoton microscopy. Optical diffusion tomography (ODT) is an emerging tool for deep tissue imaging. In this work, FRET was incorporated in an ODT framework, thereby allowing FRET to be applied in deep tissue imaging. Using simulations and tissue phantom and small animal imaging experiments, the possibility of imaging molecular activity on the nanometer scale using macroscopic measurements is demonstrated. The diffusion equation model is limited to regions of high scatter and low absorption. The Bethe-Salpeter equation has been used extensively to explain various scattering phenomena and is more fundamental than the Boltzmann transport equation. In this work, the Bethe-Salpeter equation has been investigated for modeling photon transport in the non-diffusive regime.

  4. AFFINITY OF LIGNIN PREPARATIONS TOWARDS GENOTOXIC COMPOUNDS

    Directory of Open Access Journals (Sweden)

    Božena Košíková

    2009-02-01

    Full Text Available The carcinogenicity and mutagenicity of chemicals may be modulated by other chemicals, including those prepared by organic synthesis. Consid-ering the several drawbacks of synthetic compounds vis-a-vis the human organism, the lignin biomass component was examined for this purpose. The binding affinity of lignin samples prepared by chemical and biological modification of lignin products derived from chemical wood treatment towards for N-nitrosodiethylamine (NDA was examined. The protective role of the lignin samples against carcinogenesis was tested on a well-known model carcinogen, N-methyl-N´-nitro-N-nitrosoguanidine (MNNG. The observed ability of a series of lignin preparations to reduce alkylation damage of deoxyribonucleic acid (DNA on hamster cells in vitro could be explained by their affinity to bind N-nitrosoamines. The results indicate that lignin has potential to protect living organisms against damaging effects of different genotoxicants.

  5. Phosphopeptide enrichment by immobilized metal affinity chromatography

    DEFF Research Database (Denmark)

    Thingholm, Tine E.; Larsen, Martin R.

    2016-01-01

    binding capacity. After binding, the enriched phosphopeptides are released from the metal ions using alkaline buffers of pH 10–11, EDTA, or phosphate-containing buffers. Here we describe a protocol for IMAC using Fe 3+ for phosphopeptide enrichment. The principles are illustrated on a semi-complex peptide......Immobilized metal affinity chromatography (IMAC) has been the method of choice for phosphopeptide enrichment prior to mass spectrometric analysis for many years and it is still used extensively in many laboratories. Using the affinity of negatively charged phosphate groups towards positively...... charged metal ions such as Fe3+, Ga3+, Al3+, Zr4+, and Ti4+ has made it possible to enrich phosphorylated peptides from peptide samples. However, the selectivity of most of the metal ions is limited, when working with highly complex samples, e.g., whole-cell extracts, resulting in contamination from...

  6. Affine extensions of non-crystallographic Coxeter groups induced by projection

    CERN Document Server

    Dechant, Pierre-Philippe; Twarock, Reidun

    2013-01-01

    In this paper, we show that affine extensions of non-crystallographic Coxeter groups can be derived via Coxeter-Dynkin diagram foldings and projections of the root systems E_8, D_6 and A_4. Using the known extensions for these root systems, we induce affine extensions of the non-crystallographic groups H_4, H_3 and H_2, and show that they correspond to Kac-Moody-type extensions considered in Dechant et al. This class of extensions was motivated by physical applications in icosahedral systems in biology (viruses), physics (quasicrystals) and chemistry (fullerenes); the connection with the affine extension of E_8 derived here suggests potential for high energy physics applications. The invertibility of the projection suggests a generalisation of Cartan matrices by relaxing some of the usual requirements.

  7. High-affinity neuropeptide Y receptor antagonists.

    OpenAIRE

    Daniels, A J; Matthews, J. E.; Slepetis, R J; Jansen, M; Viveros, O. H.; Tadepalli, A.; Harrington, W; Heyer, D; Landavazo, A; Leban, J J

    1995-01-01

    Neuropeptide Y (NPY) is one of the most abundant peptide transmitters in the mammalian brain. In the periphery it is costored and coreleased with norepinephrine from sympathetic nerve terminals. However, the physiological functions of this peptide remain unclear because of the absence of specific high-affinity receptor antagonists. Three potent NPY receptor antagonists were synthesized and tested for their biological activity in in vitro, ex vivo, and in vivo functional assays. We describe he...

  8. Staircase models from affine Toda field theory

    International Nuclear Information System (INIS)

    The authors propose a class of purely elastic scattering theories generalizing the staircase model of Al. B. Zamolodchikov, based on the affine Toda field theories for simply-laced Lie algebras g = A,D,E at suitable complex values of their coupling constants. Considering their Thermodynamic Bethe Ansatz equations, they give analytic arguments in support of a conjectured renormalization group flow visiting the neighborhood of each Wg minimal model in turn

  9. AFFINE TRANSFORMATION IN RANDOM ITERATED FUNCTION SYSTEMS

    Institute of Scientific and Technical Information of China (English)

    熊勇; 史定华

    2001-01-01

    Random iterated function systems (IFSs) is discussed, which is one of the methods for fractal drawing. A certain figure can be reconstructed by a random IFS. One approach is presented to determine a new random IFS, that the figure reconstructed by the new random IFS is the image of the origin figure reconstructed by old IFS under a given affine transformation. Two particular examples are used to show this approach.

  10. Homogeneous grading affine Toda quantum solitons

    Czech Academy of Sciences Publication Activity Database

    Zuevsky, Alexander

    Vol. 563. Bristol : IOP Science, 2014 - (Burdik, C.; Navratil, O.; Posta, S.), 012036 ISSN 1742-6588. [International Conference on Integrable Systems and Quantum Symmetries (ISQS-22) /22./. Prague (CZ), 26.06.2014-29.06.-2014] Institutional support: RVO:67985840 Keywords : exactly solvable models * conformal and affine Toda systems * quantum groups Subject RIV: BA - General Mathematics http://iopscience.iop.org/1742-6596/563/1/012036

  11. Denominators in cluster algebras of affine type

    OpenAIRE

    Buan, Aslak Bakke; Marsh, Robert J.

    2008-01-01

    The Fomin-Zelevinsky Laurent phenomenon states that every cluster variable in a cluster algebra can be expressed as a Laurent polynomial in the variables lying in an arbitrary initial cluster. We give representation-theoretic formulas for the denominators of cluster variables in cluster algebras of affine type. The formulas are in terms of the dimensions of spaces of homomorphisms in the corresponding cluster category, and hold for any choice of initial cluster.

  12. Thermodynamics. Using Affinities to define reversible processes

    CERN Document Server

    Ritacco, Hernán A

    2016-01-01

    In this article a definition of reversible processes in terms of differences in intensive Thermodynamics properties (Affinities) is proposed. This definition makes it possible to both define reversible processes before introducing the concept of entropy and avoid the circularity problem that follows from the Clausius definition of entropy changes. The convenience of this new definition compared to those commonly found in textbooks is demonstrated with examples.

  13. Overview of affinity biosensors in food analysis.

    Science.gov (United States)

    Patel, Pradip D

    2006-01-01

    The 4 major driving forces that are expected to lead to increased use of affinity biosensors that meet crucial industrial test specifications, e.g., fast, reliable, cost-effective, and use of low-skilled personnel, are (1) strict legislative framework, e.g., recent changes proposed to the European food safety and hygiene legislation, EC No. 178/2002; (2) industrial shift from quality control to quality assurance procedures, e.g., Hazard Analysis Critical Control Point, ensuring effective positioning in the global competitive trade; (3) just-in-time production resulting in 'right' product every time; and (4) consumer demand for safe and wholesome products. The affinity biosensors field has expanded significantly over the past decade, with a projected global biosensors market growth from $6.1 billion in 2004 to $8.2 billion in 2009, representing major industrial sectors (e.g., Pharma, Medicare, and Food). This brief review is targeted to affinity biosensors developed for the food industry and includes research and development leading to biosensors for microbiological and chemical analytes of industrial concern, commercial biosensors products on the market, and examples of future prospects in this diagnostic field. PMID:16792079

  14. Phosphopeptide Enrichment by Immobilized Metal Affinity Chromatography.

    Science.gov (United States)

    Thingholm, Tine E; Larsen, Martin R

    2016-01-01

    Immobilized metal affinity chromatography (IMAC) has been the method of choice for phosphopeptide enrichment prior to mass spectrometric analysis for many years and it is still used extensively in many laboratories. Using the affinity of negatively charged phosphate groups towards positively charged metal ions such as Fe(3+), Ga(3+), Al(3+), Zr(4+), and Ti(4+) has made it possible to enrich phosphorylated peptides from peptide samples. However, the selectivity of most of the metal ions is limited, when working with highly complex samples, e.g., whole-cell extracts, resulting in contamination from nonspecific binding of non-phosphorylated peptides. This problem is mainly caused by highly acidic peptides that also share high binding affinity towards these metal ions. By lowering the pH of the loading buffer nonspecific binding can be reduced significantly, however with the risk of reducing specific binding capacity. After binding, the enriched phosphopeptides are released from the metal ions using alkaline buffers of pH 10-11, EDTA, or phosphate-containing buffers. Here we describe a protocol for IMAC using Fe(3+) for phosphopeptide enrichment. The principles are illustrated on a semi-complex peptide mixture. PMID:26584922

  15. Null vector fields in spaces with affine connections and metrics. Doppler's effect, Hubble's effect, and aberration's effect

    OpenAIRE

    Manoff, Sawa

    2003-01-01

    The notion of null (isotropic) vector field is considered in spaces with affine connections and metrics as models of space or space-time. On its basis the propagation of signals in space-time is considered. The Doppler effect is generalized for these types of spaces. The notions of standard (longitudinal) Doppler effect and transversal Doppler effect are introduced. On their grounds, the Hubble effect and the aberration effect appear as Doppler effects with explicit forms of the centrifugal (...

  16. Application of supervised Kohonen map and counter propagation neural network for classification of nucleic acid structures based on their circular dichroism spectra

    Science.gov (United States)

    Ghobadi, Mohadeseh Zarei; Kompany-Zareh, Mohsen

    2014-11-01

    One of the most popular instrumental methods to detect the DNA structure is circular dichroism. Specific experimental conditions are required to form different structures of DNA. However, there is the possibility of different structures establishing in the similar circumstance. So, methods development to improve the classification and prediction of structures using their spectra information are needed. To this end, we applied unsupervised (PCA) and supervised (PLS-DA, SKN, and CPNN) approaches to classify CD spectra dataset of different DNA sequences (random coil (ss-DNA), duplex, hairpin, reversed and normal triplex, parallel and antiparallel G-quadruplex, and i-motif). The main part of this work concentrates on the application of artificial neural networks and weight analysis to obtain more classification and prediction accuracy. For this purpose, the trained network was run 10 times, and the average weights were taken. Also, weight analysis was done for the prediction of mixture samples include different structures. The results prove that new method of weights analysis based on SKN and CPNN is useful for classification of complicated data such as different types of DNA structures.

  17. Particle-in-cell simulations of ultra intense laser pulses propagating through overdense plasma for fast-ignitor and radiography applications

    International Nuclear Information System (INIS)

    Zohar (two-dimensions, particle-in-cell) [C. K. Birdsall and A. B. Langdon, Plasma Physics via Computer Simulation (McGraw - Hill, New York, 1985)] simulations of ultra intense laser beams boring into overdense plasmas whose parameters are guided by the fast-ignitor concept and radiography applications are presented. Complex low frequency magnetic field structures, narrow channel formation, and beam deflection are all evident. Particle tracking diagnostics elucidate the nature of the currents that produce and interact with these static magnetic fields which are larger than 109 G for simulations at 1021 W/cm2 in a 50nc plasma. Tracking electron orbits provides a more complete understanding of the hot electron generation as the short pulse, high intensity laser penetrates overdense plasma. Particles which constitute the current in the narrow channel are partially confined by the low frequency magnetic field. In contrast, the return current particles on the outside of the channel are defocused by the high magnetic field and move away from the channel

  18. Light Front Boson Model Propagation

    Institute of Scientific and Technical Information of China (English)

    Jorge Henrique Sales; Alfredo Takashi Suzuki

    2011-01-01

    stract The scope and aim of this work is to describe the two-body interaction mediated by a particle (either the scalar or the gauge boson) within the light-front formulation. To do this, first of all we point out the importance of propagators and Green functions in Quantum Mechanics. Then we project the covariant quantum propagator onto the light front time to get the propagator for scalar particles in these coordinates. This operator propagates the wave function from x+ = 0 to x+ > O. It corresponds to the definition of the time ordering operation in the light front time x+. We calculate the light-front Green's function for 2 interacting bosons propagating forward in x+. We also show how to write down the light front Green's function from the Feynman propagator and finally make a generalization to N bosons.

  19. Quelques remarques sur la notion de modification affine

    OpenAIRE

    Dubouloz, Adrien

    2005-01-01

    in french We construct a global counterpart to the notion of affine modification due to Kaliman and Zaidenberg. This leads to a simple explicit description of the structure of birational affine morphisms between arbitrary quasi-projective varieties.

  20. Interferometric Propagation Delay

    Science.gov (United States)

    Goldstein, Richard

    1999-01-01

    Radar interferometry based on (near) exact repeat passes has lately been used by many groups of scientists, worldwide, to achieve state of the art measurements of topography, glacier and ice stream motion, earthquake displacements, oil field subsidence, lava flows, crop-induced surface decorrelation, and other effects. Variations of tropospheric and ionospheric propagation delays limit the accuracy of all such measurements. We are investigating the extent of this limitation, using data from the Shuttle radar flight, SIR-C, which is sensitive to the troposphere, and the Earth Resources Satellites, ERS-1/2, which are sensitive to both the troposphere and the ionosphere. We are presently gathering statistics of the delay variations over selected, diverse areas to determine the best accuracy possible for repeat track interferometry. The phases of an interferogram depend on both the topography of the scene and variations in propagation delay. The delay variations can be caused by movement of elements in the scene, by changes in tropospheric water vapor and by changes of the charge concentrations in the ionosphere. We plan to separate these causes by using the data from a third satellite visit (three-pass interferometry). The figure gives the geometry of the three-pass observations. The page of the figure is taken to be perpendicular to the spacecraft orbits. The three observational locations are marked on the figure, giving baselines B-12 and B-13, separated by the angle alpha. These parameters are almost constant over the whole scene. However, each pixel has an individual look angle, theta, which is related to the topography, rho is the slant range. A possible spurious time delay is shown. Additional information is contained in the original.

  1. A Topic Modeling Toolbox Using Belief Propagation

    OpenAIRE

    Zeng, Jia

    2012-01-01

    Latent Dirichlet allocation (LDA) is an important hierarchical Bayesian model for probabilistic topic modeling, which attracts worldwide interests and touches on many important applications in text mining, computer vision and computational biology. This paper introduces a topic modeling toolbox (TMBP) based on the belief propagation (BP) algorithms. TMBP toolbox is implemented by MEX C++/Matlab/Octave for either Windows 7 or Linux. Compared with existing topic modeling packages, the novelty o...

  2. Propagation of Nonlinear Pressure Waves in Blood

    OpenAIRE

    Elgarayhi, A.; E. K. El-Shewy; MAHMOUD, ABEER A.; Elhakem, Ali A.

    2013-01-01

    The propagation of weakly nonlinear pressure waves in a fluid-filled elastic tube has been investigated. The reductive perturbation method has been employed to derive the Korteweg-de Vries equation for small but finite amplitude. The effect of the final inner radius of the tube on the basic properties of the soliton wave was discussed. Moreover, the conditions of stability and the soliton existence via the potential and the corresponding phase portrait were computed. The applicability of the ...

  3. Unidirectional propagation of designer surface acoustic waves

    CERN Document Server

    Lu, Jiuyang; Ke, Manzhu; Liu, Zhengyou

    2014-01-01

    We propose an efficient design route to generate unidirectional propagation of the designer surface acoustic waves. The whole system consists of a periodically corrugated rigid plate combining with a pair of asymmetric narrow slits. The directionality of the structure-induced surface waves stems from the destructive interference between the evanescent waves emitted from the double slits. The theoretical prediction is validated well by simulations and experiments. Promising applications can be anticipated, such as in designing compact acoustic circuits.

  4. Adapting Resilient Propagation for Deep Learning

    OpenAIRE

    Mosca, Alan; Magoulas, George D.

    2015-01-01

    The Resilient Propagation (Rprop) algorithm has been very popular for backpropagation training of multilayer feed-forward neural networks in various applications. The standard Rprop however encounters difficulties in the context of deep neural networks as typically happens with gradient-based learning algorithms. In this paper, we propose a modification of the Rprop that combines standard Rprop steps with a special drop out technique. We apply the method for training Deep Neural Networks as s...

  5. Propagation aspects of frequency hopping spread spectrum

    OpenAIRE

    Fitton, MP; Nix, AR; Beach, MA

    1997-01-01

    Frequency hopping spread spectrum (FH-SS) has found a number of applications in both CDMA and TDMA cellular systems, wireless local loop, and wireless local area networks. The effect of FH-SS on mobile channel characteristics is evaluated. Employing propagation studies, statistical analysis and simulation models, it is shown that the frequency-hopped channel displays improved characteristics when compared to the non-hopped case. The short term fading statistics are improved, which can be expl...

  6. Back-propagation of accuracy

    OpenAIRE

    Senashova, M. Yu.; Gorban, A. N.; Wunsch II, D. C.

    2003-01-01

    In this paper we solve the problem: how to determine maximal allowable errors, possible for signals and parameters of each element of a network proceeding from the condition that the vector of output signals of the network should be calculated with given accuracy? "Back-propagation of accuracy" is developed to solve this problem. The calculation of allowable errors for each element of network by back-propagation of accuracy is surprisingly similar to a back-propagation of error, because it is...

  7. Join-Graph Propagation Algorithms

    OpenAIRE

    Mateescu, Robert; Kask, Kalev; Gogate, Vibhav; Dechter, Rina

    2014-01-01

    The paper investigates parameterized approximate message-passing schemes that are based on bounded inference and are inspired by Pearl's belief propagation algorithm (BP). We start with the bounded inference mini-clustering algorithm and then move to the iterative scheme called Iterative Join-Graph Propagation (IJGP), that combines both iteration and bounded inference. Algorithm IJGP belongs to the class of Generalized Belief Propagation algorithms, a framework that allowed connections with a...

  8. Propagation Terminal Design and Measurements

    Science.gov (United States)

    Nessel, James

    2015-01-01

    The NASA propagation terminal has been designed and developed by the Glenn Research Center and is presently deployed at over 5 NASA and partner ground stations worldwide collecting information on the effects of the atmosphere on Ka-band and millimeter wave communications links. This lecture provides an overview of the fundamentals and requirements of the measurement of atmospheric propagation effects and, specifically, the types of hardware and digital signal processing techniques employed by current state-of-the-art propagation terminal systems.

  9. A multiscale framework for affine invariant pattern recognition and registration

    OpenAIRE

    Rahtu, E. (Esa)

    2007-01-01

    Abstract This thesis presents a multiscale framework for the construction of affine invariant pattern recognition and registration methods. The idea in the introduced approach is to extend the given pattern to a set of affine covariant versions, each carrying slightly different information, and then to apply known affine invariants to each of them separately. The key part of the framework is the construction of the affine covariant set, and this is done by combining several scaled represen...

  10. The purification of affinity-labelled active-site peptides

    International Nuclear Information System (INIS)

    The isolation of the labelled peptide from the protein digest, following the affinity labelling of the active sites of enzymes or antibodies, is described. Single-step affinity chromatography utilises the affinity of the native enzymes or antibody for the ligand used to label the same protein. The labelled peptide is the only one in the digest that displays affinity for the immobilised protein and can be released with eluants that dissociate the protein-ligand complex. (Auth.)

  11. Cascade dynamics of complex propagation

    Science.gov (United States)

    Centola, Damon; Eguíluz, Víctor M.; Macy, Michael W.

    2007-01-01

    Random links between otherwise distant nodes can greatly facilitate the propagation of disease or information, provided contagion can be transmitted by a single active node. However, we show that when the propagation requires simultaneous exposure to multiple sources of activation, called complex propagation, the effect of random links can be just the opposite; it can make the propagation more difficult to achieve. We numerically calculate critical points for a threshold model using several classes of complex networks, including an empirical social network. We also provide an estimation of the critical values in terms of vulnerable nodes.

  12. Wave Propagation in Jointed Geologic Media

    Energy Technology Data Exchange (ETDEWEB)

    Antoun, T

    2009-12-17

    Predictive modeling capabilities for wave propagation in a jointed geologic media remain a modern day scientific frontier. In part this is due to a lack of comprehensive understanding of the complex physical processes associated with the transient response of geologic material, and in part it is due to numerical challenges that prohibit accurate representation of the heterogeneities that influence the material response. Constitutive models whose properties are determined from laboratory experiments on intact samples have been shown to over-predict the free field environment in large scale field experiments. Current methodologies for deriving in situ properties from laboratory measured properties are based on empirical equations derived for static geomechanical applications involving loads of lower intensity and much longer durations than those encountered in applications of interest involving wave propagation. These methodologies are not validated for dynamic applications, and they do not account for anisotropic behavior stemming from direcitonal effects associated with the orientation of joint sets in realistic geologies. Recent advances in modeling capabilities coupled with modern high performance computing platforms enable physics-based simulations of jointed geologic media with unprecedented details, offering a prospect for significant advances in the state of the art. This report provides a brief overview of these modern computational approaches, discusses their advantages and limitations, and attempts to formulate an integrated framework leading to the development of predictive modeling capabilities for wave propagation in jointed and fractured geologic materials.

  13. Duals of Affine Grassmann Codes and Their Relatives

    DEFF Research Database (Denmark)

    Beelen, P.; Ghorpade, S. R.; Hoholdt, T.

    2012-01-01

    Affine Grassmann codes are a variant of generalized Reed-Muller codes and are closely related to Grassmann codes. These codes were introduced in a recent work by Beelen Here, we consider, more generally, affine Grassmann codes of a given level. We explicitly determine the dual of an affine Grassm...

  14. Self-affinity in phase space.

    Science.gov (United States)

    Alieva, T; Bastiaans, M J

    2000-04-01

    The expression for the Wigner distribution (WD) in polar coordinates was derived, based on the decomposition of coherent and partially coherent fields on the orthogonal sets of Hermite-Gauss modes. This representation allows one to analyze easily the structure of the WD and to describe the field propagation through first-order optical systems, including the self-imaging phenomenon. PMID:10757184

  15. Affinity sensor using 3-aminophenylboronic acid for bacteria detection.

    Science.gov (United States)

    Wannapob, Rodtichoti; Kanatharana, Proespichaya; Limbut, Warakorn; Numnuam, Apon; Asawatreratanakul, Punnee; Thammakhet, Chongdee; Thavarungkul, Panote

    2010-10-15

    Boronic acid that can reversibly bind to diols was used to detect bacteria through its affinity binding reaction with diol-groups on bacterial cell walls. 3-aminophenylboronic acid (3-APBA) was immobilized on a gold electrode via a self-assembled monolayer. The change in capacitance of the sensing surface caused by the binding between 3-APBA and bacteria in a flow system was detected by a potentiostatic step method. Under optimal conditions the linear range of 1.5×10(2)-1.5×10(6) CFU ml(-1) and the detection limit of 1.0×10(2) CFU ml(-1) was obtained. The sensing surface can be regenerated and reused up to 58 times. The method was used for the analysis of bacteria in several types of water, i.e., bottled, well, tap, reservoir and wastewater. Compared with the standard plate count method, the results were within one standard deviation of each other. The proposed method can save both time and cost of analysis. The electrode modified with 3-APBA would also be applicable to the detection of other cis-diol-containing analytes. The concept could be extended to other chemoselective ligands, offering less expensive and more robust affinity sensors for a wide range of compounds. PMID:20801635

  16. Innate immunity probed by lipopolysaccharides affinity strategy and proteomics.

    Science.gov (United States)

    Giangrande, Chiara; Colarusso, Lucia; Lanzetta, Rosa; Molinaro, Antonio; Pucci, Piero; Amoresano, Angela

    2013-01-01

    Lipopolysaccharides (LPSs) are ubiquitous and vital components of the cell surface of Gram-negative bacteria that have been shown to play a relevant role in the induction of the immune-system response. In animal and plant cells, innate immune defenses toward microorganisms are triggered by the perception of pathogen associated molecular patterns. These are conserved and generally indispensable microbial structures such as LPSs that are fundamental in the Gram-negative immunity recognition. This paper reports the development of an integrated strategy based on lipopolysaccharide affinity methodology that represents a new starting point to elucidate the molecular mechanisms elicited by bacterial LPS and involved in the different steps of innate immunity response. Biotin-tagged LPS was immobilized on streptavidin column and used as a bait in an affinity capture procedure to identify protein partners from human serum specifically interacting with this effector. The complex proteins/lipopolysaccharide was isolated and the protein partners were fractionated by gel electrophoresis and identified by mass spectrometry. This procedure proved to be very effective in specifically binding proteins functionally correlated with the biological role of LPS. Proteins specifically bound to LPS essentially gathered within two functional groups, regulation of the complement system (factor H, C4b, C4BP, and alpha 2 macroglobulin) and inhibition of LPS-induced inflammation (HRG and Apolipoproteins). The reported strategy might have important applications in the elucidation of biological mechanisms involved in the LPSs-mediated molecular recognition and anti-infection responses. PMID:22752448

  17. 01-ERD-111 - The Development of Synthetic High Affinity Ligands

    Energy Technology Data Exchange (ETDEWEB)

    Perkins, J; Balhorn, R; Cosman, M; Lightstone, F; Zeller, L

    2004-02-05

    The aim of this project was to develop Synthetic High-Affinity Ligands (SHALs), which bind with high affinity and specificity to proteins of interest for national security and cancer therapy applications. The aim of producing synthetic ligands for sensory devices as an alternative to antibody-based detection assays and therapeutic agents is to overcome the drawbacks associated with antibody-based in next-generation sensors and systems. The focus area of the project was the chemical synthesis of the SHALs. The project concentrated on two different protein targets. (a) The C fragment of tetanus and botulinum toxin, potential biowarfare agents. A SHAL for tetanus or botulinum toxin would be incorporated into a sensory device for the toxins. (b) HLA-DR10, a protein found in high abundance on the surface of Non-Hodgkins Lymphoma. A SHAL specific to a tumor marker, labeled with a radionuclide, would enable the targeted delivery of radiation therapy to metastatic disease. The technical approach used to develop a SHAL for each protein target will be described in more detail below. However, in general, the development of a SHAL requires a combination of computational modeling techniques, modern nuclear magnetic resonance spectroscopy (NMR) and synthetic chemistry.

  18. Aircraft noise and its nearfield propagation computations

    Science.gov (United States)

    Zhang, Xin

    2012-08-01

    Noise generated by civil transport aircraft during take-off and approach-to-land phases of operation is an environmental problem. The aircraft noise problem is firstly reviewed in this article. The review is followed by a description and assessment of a number of sound propagation methods suitable for applications with a background mean flow field pertinent to aircraft noise. Of the three main areas of the noise problem, i.e. generation, propagation, and radiation, propagation provides a vital link between near-field noise generation and far-field radiation. Its accurate assessment ensures the overall validity of a prediction model. Of the various classes of propagation equations, linearised Euler equations are often casted in either time domain or frequency domain. The equations are often solved numerically by computational aeroacoustics techniques, bur are subject to the onset of Kelvin-Helmholtz (K-H) instability modes which may ruin the solutions. Other forms of linearised equations, e.g. acoustic perturbation equations have been proposed, with differing degrees of success.

  19. Aircraft noise and its nearfield propagation computations

    Institute of Scientific and Technical Information of China (English)

    Xin Zhang

    2012-01-01

    Noise generated by civil transport aircraft during take-off and approach-to-land phases of operation is an environmental problem.The aircraft noise problem is firstly reviewed in this article.The review is followed by a description and assessment of a number of sound propagation methods suitable for applications with a background mean flow field pertinent to aircraft noise.Of the three main areas of the noise problem,i.e.generation,propagation,and radiation,propagation provides a vital link between near-field noise generation and far-field radiation.Its accurate assessment ensures the overall validity of a prediction model.Of the various classes of propagation equations,linearised Euler equations are often casted in either time domain or frequency domain.The equations are often solved numerically by computational aeroacoustics techniques,bur are subject to the onset of Kelvin-Helmholtz (K-H) instability modes which may ruin the solutions. Other forms of linearised equations,e.g.acoustic perturbation equations have been proposed,with differing degrees of success.

  20. An investigation into Voigt wave propagation for optical sensing

    Science.gov (United States)

    Mackay, Tom G.

    2013-09-01

    In the nonsingular case of optical propagation in a linear, homogeneous, anisotropic, dielectric material, two independent plane waves, with orthogonal polarizations and different phase speeds, can propagate in a given direction. However, in certain dissipative biaxial materials there are particular directions along which these two waves coalesce to form a single plane wave. This coalescent Voigt wave represents the singular case. Most conspicuously, the amplitude of Voigt waves are linearly dependent upon propagation direction. A porous nanostructured thin film which supports Voigt wave propagation was investigated, with a view to possible optical sensing applications. The directions along which Voigt waves propagate can be highly sensitive to the refractive index of a fluid which infiltrates this porous material. Indeed, in our theoretical studies sensitivities which compare favourably to those of surface-plasmon-polariton-based optical sensors were found.

  1. Efficient Geometric Sound Propagation Using Visibility Culling

    Science.gov (United States)

    Chandak, Anish

    2011-07-01

    Simulating propagation of sound can improve the sense of realism in interactive applications such as video games and can lead to better designs in engineering applications such as architectural acoustics. In this thesis, we present geometric sound propagation techniques which are faster than prior methods and map well to upcoming parallel multi-core CPUs. We model specular reflections by using the image-source method and model finite-edge diffraction by using the well-known Biot-Tolstoy-Medwin (BTM) model. We accelerate the computation of specular reflections by applying novel visibility algorithms, FastV and AD-Frustum, which compute visibility from a point. We accelerate finite-edge diffraction modeling by applying a novel visibility algorithm which computes visibility from a region. Our visibility algorithms are based on frustum tracing and exploit recent advances in fast ray-hierarchy intersections, data-parallel computations, and scalable, multi-core algorithms. The AD-Frustum algorithm adapts its computation to the scene complexity and allows small errors in computing specular reflection paths for higher computational efficiency. FastV and our visibility algorithm from a region are general, object-space, conservative visibility algorithms that together significantly reduce the number of image sources compared to other techniques while preserving the same accuracy. Our geometric propagation algorithms are an order of magnitude faster than prior approaches for modeling specular reflections and two to ten times faster for modeling finite-edge diffraction. Our algorithms are interactive, scale almost linearly on multi-core CPUs, and can handle large, complex, and dynamic scenes. We also compare the accuracy of our sound propagation algorithms with other methods. Once sound propagation is performed, it is desirable to listen to the propagated sound in interactive and engineering applications. We can generate smooth, artifact-free output audio signals by applying

  2. Avoiding degenerate coframes in an affine gauge approach to quantum gravity

    International Nuclear Information System (INIS)

    This report discusses the following concepts on quantum gravity: The affine gauge approach; affine gauge transformations versus active differomorphisms; affine gauge approach to quantum gravity with topology change

  3. Propagation of Ion Acoustic Perturbations

    DEFF Research Database (Denmark)

    Pécseli, Hans

    1975-01-01

    Equations describing the propagation of ion acoustic perturbations are considered, using the assumption that the electrons are Boltzman distributed and isothermal at all times. Quasi-neutrality is also considered.......Equations describing the propagation of ion acoustic perturbations are considered, using the assumption that the electrons are Boltzman distributed and isothermal at all times. Quasi-neutrality is also considered....

  4. On Metrizability of Invariant Affine Connections

    CERN Document Server

    Tanaka, Erico

    2011-01-01

    The metrizability problem for a symmetric affine connection on a manifold, invariant with respect to a group of diffeomorphisms G, is considered. We say that the connection is G-metrizable, if it is expressible as the Levi-Civita connection of a G-invariant metric field. In this paper we analyze the G-metrizability equations for the rotation group G = SO(3), acting canonically on three- and four-dimensional Euclidean spaces. We show that the property of the connection to be SO(3)-invariant allows us to find complete explicit description of all solutions of the SO(3)-metrizability equations.

  5. Quantum affine symmetry in vertex models

    CERN Document Server

    Idzumi, M; Jimbo, M; Miwa, T; Nakashima, T; Tokihiro, T; Idzumi, Makoto; Iohara, Kenji; Jimbo, Michio; Miwa, Tetsuji; Nakashima, Toshiki; Tokihiro, Tetsuji

    1993-01-01

    We study the higher spin anologs of the six vertex model on the basis of its symmetry under the quantum affine algebra $U_q(\\slth)$. Using the method developed recently for the XXZ spin chain, we formulate the space of states, transfer matrix, vacuum, creation/annihilation operators of particles, and local operators, purely in the language of representation theory. We find that, regardless of the level of the representation involved, the particles have spin $1/2$, and that the $n$-particle space has an RSOS-type structure rather than a simple tensor product of the $1$-particle space. This agrees with the picture proposed earlier by Reshetikhin.

  6. propagating through optical glasses

    Directory of Open Access Journals (Sweden)

    M. Rosete-Aguilar

    2008-01-01

    Full Text Available La dispersión cromática de materiales ópticos ocasiona el ensanchamiento de un pulso óptico conforme se propaga a través del material. El ensanchamiento del pulso se produce por la dependencia de la velocidad de grupo con la frecuencia. En este artículo evaluamos el ensanchamiento temporal del pulso conforme se propaga en el vidrio óptico. Evaluamos la dependencia de la velocidad de grupo con la frecuencia en términos de la dependencia del índice de refracción de fase del vidrio con la longitud de onda de la luz. La dependencia del índice de refracción de fase con la longitud de onda en vidrios es bien conocida a través de la fórmula de Sellmeier. Se presentan resultados para pulsos de 50, 80 y 100 fs propagándose una distancia L en vidrios ópticos de Schott BK7, SF14 y Silica fundida los cuales son verificados usando un modelo de suma de frecuencias moduladas por una gaussiana

  7. Interest Rates with Long Memory: A Generalized Affine Term-Structure Model

    DEFF Research Database (Denmark)

    Osterrieder, Daniela

    We propose a model for the term structure of interest rates that is a generalization of the discrete-time, Gaussian, affine yield-curve model. Compared to standard affine models, our model allows for general linear dynamics in the vector of state variables. In an application to real yields of U...... by a level, a slope, and a curvature factor that arise naturally from the co-fractional modeling framework. We show that implied yields match the level and the variability of yields well over time. Studying the out-of-sample forecasting accuracy of our model, we find that our model results in good...

  8. Connection between the Affine and conformal Affine Toda models and their Hirota's solution

    International Nuclear Information System (INIS)

    It is shown that the Affine Toda models (AT) constitute a gauge fixed version of the Conformal Affine Toda model (CAT). This result enables one to map every solution of the AT models into an infinite number of solutions of the corresponding CAT models, each one associated to a point of the orbit of the conformal group. The Hirota's τ-function are introduced and soliton solutions for the AT and CAT models associated to SL (r+1) and SP (r) are constructed. (author)

  9. Breeding vegetatively propagated horticultural crops

    Directory of Open Access Journals (Sweden)

    Dilson Antônio Bisognin

    2011-01-01

    Full Text Available Horticulture is an important part of agriculture with many important crops being vegetatively propagated. Theobjectives of this work were to discuss some of the most important characteristics of vegetatively propagated crops and the breedingstrategies to develop and propagate new cultivars. Vegetative propagation enables to fix favorable combinations of important traits,very specific chemical compositions, superior genetic variance interactions and high levels of heterozygosity. Breeding new cultivarsinvolve few possibilities of genetic recombination by sexual reproduction and many generations of selection and vegetative propagation.Marker assisted selection should be useful for genotyping and selecting complementary parents for crossing and for identifyingsuperior genotypes at early stages of selection. The tissue culture technique enables to get disease free stock plants and to maximizeits multiplication rate, having an important role in yield and quality of these crops.

  10. Propagation Engineering in Wireless Communications

    CERN Document Server

    Ghasemi, Abdollah; Ghasemi, Farshid

    2012-01-01

    Wireless communications has seen explosive growth in recent decades, in a realm that is both broad and rapidly expanding to include satellite services, navigational aids, remote sensing, telemetering, audio and video broadcasting, high-speed data communications, mobile radio systems and much more. Propagation Engineering in Wireless Communications deals with the basic principles of radiowaves propagation for frequency bands used in radio-communications, offering descriptions of new achievements and newly developed propagation models. The book bridges the gap between theoretical calculations and approaches, and applied procedures needed for advanced radio links design. The primary objective of this two-volume set is to demonstrate the fundamentals, and to introduce propagation phenomena and mechanisms that engineers are likely to encounter in the design and evaluation of radio links of a given type and operating frequency. Volume one covers basic principles, along with tropospheric and ionospheric propagation,...

  11. The metric-affine formalism of f(R) gravity

    International Nuclear Information System (INIS)

    Recently a class of alternative theories of gravity which goes under the name f(R) gravity, has received considerable attention, mainly due to its interesting applications in cosmology. However, the phenomenology of such theories is not only relevant to cosmological scales, especially when it is treated within the framework of the so called Palatini variation, an independent variation with respect to the metric and the connection, which is not considered a priori to be the Levi-Civita connection of the metric. If this connection has its standard geometrical meaning the resulting theory will be a metric-affine theory of gravity, as will be discussed in this talk. The general formalism will be presented and several aspects of the theory will be covered, mainly focusing on the enriched phenomenology that such theories exhibit with respect to General Relativity, relevant not only to large scales (cosmology) but also to small scales (e.g. torsion)

  12. Affinity sensor based on immobilized molecular imprinted synthetic recognition elements.

    Science.gov (United States)

    Lenain, Pieterjan; De Saeger, Sarah; Mattiasson, Bo; Hedström, Martin

    2015-07-15

    An affinity sensor based on capacitive transduction was developed to detect a model compound, metergoline, in a continuous flow system. This system simulates the monitoring of low-molecular weight organic compounds in natural flowing waters, i.e. rivers and streams. During operation in such scenarios, control of the experimental parameters is not possible, which poses a true analytical challenge. A two-step approach was used to produce a sensor for metergoline. Submicron spherical molecularly imprinted polymers, used as recognition elements, were obtained through emulsion polymerization and subsequently coupled to the sensor surface by electropolymerization. This way, a robust and reusable sensor was obtained that regenerated spontaneously under the natural conditions in a river. Small organic compounds could be analyzed in water without manipulating the binding or regeneration conditions, thereby offering a viable tool for on-site application. PMID:25703726

  13. Dynamical surface affinity of diphasic liquids as a probe of wettability of multimodal porous media.

    Science.gov (United States)

    Korb, J-P; Freiman, G; Nicot, B; Ligneul, P

    2009-12-01

    We introduce a method for estimating the wettability of rock/oil/brine systems using noninvasive in situ nuclear magnetic relaxation dispersion. This technique scans over a large range of applied magnetic fields and yields unique information about the extent to which a fluid is dynamically correlated with a solid rock surface. Unlike conventional transverse relaxation studies, this approach is a direct probe of the dynamical surface affinity of fluids. To quantify these features we introduce a microscopic dynamical surface affinity index which measures the dynamical correlation (i.e., the microscopic wettability) between the diffusive fluid and the fixed paramagnetic relaxation sources at the pore surfaces. We apply this method to carbonate reservoir rocks which are known to hold about two thirds of the world's oil reserves. Although this nondestructive method concerns here an application to rocks, it could be generalized as an in situ liquid/surface affinity indicator for any multimodal porous medium including porous biological media. PMID:20365175

  14. Subspace model identification of guided wave propagation in metallic plates

    International Nuclear Information System (INIS)

    In this study, a data-driven subspace system identification approach is proposed for modeling guided wave propagation in plate media. In the data-driven approach, the subspace system identification estimates a mathematical model fitted to experimentally measured data, but the black-box model identified captures the dynamics of wave propagation. To demonstrate the versatility of the black-box model, wave motions in various shapes of aluminum plates are investigated in the study. In addition, a waveform predictor and temperature change indicator are proposed as applications of the black-box models, to further promote the modeling approach to guided wave propagation. (paper)

  15. On the development of approximate models for outdoor sound propagation

    DEFF Research Database (Denmark)

    Rasmussen, Karsten Bo

    1998-01-01

    able to handle all the relevant aspects of propagation such as terrain features, atmospheric wind and temperature gradients and turbulence.How much wind can be tolerated when a model based upon a still homogeneous atmosphereis used? How does a terrain feature affect the sound propagation? An attempt......The suitable prediction model for outdoor sound propagation depends on the situation and the application. Computationally intensive method such as Parabolic Equation methods, FFP methods and Boundary Element Methods all have advantages in certain situations. None of these approaches are at present...

  16. Induced Modules for Affine Lie Algebras

    Directory of Open Access Journals (Sweden)

    Vyacheslav Futorny

    2009-03-01

    Full Text Available We study induced modules of nonzero central charge with arbitrary multiplicities over affine Lie algebras. For a given pseudo parabolic subalgebra P of an affine Lie algebra G, our main result establishes the equivalence between a certain category of P-induced G-modules and the category of weight P-modules with injective action of the central element of G. In particular, the induction functor preserves irreducible modules. If P is a parabolic subalgebra with a finite-dimensional Levi factor then it defines a unique pseudo parabolic subalgebra P^{ps}, P subset P^{ps}. The structure of P-induced modules in this case is fully determined by the structure of P^{ps}-induced modules. These results generalize similar reductions in particular cases previously considered by V. Futorny, S. König, V. Mazorchuk [Forum Math. 13 (2001, 641-661], B. Cox [Pacific J. Math. 165 (1994, 269-294] and I. Dimitrov, V. Futorny, I. Penkov [Comm. Math. Phys. 250 (2004, 47-63].

  17. Exploring Fluorous Affinity by Liquid Chromatography.

    Science.gov (United States)

    Catani, Martina; Guzzinati, Roberta; Marchetti, Nicola; Pasti, Luisa; Cavazzini, Alberto

    2015-07-01

    Terms such as "fluorous affinity" and "fluorophilicity" have been used to describe the unique partition and sorption properties often exhibited by highly fluorinated organic compounds, that is molecules rich in sp(3) carbon-fluorine bonds. In this work, we made use of a highly fluorinated stationary phase and a series of benzene derivatives to study the effect of one single perfluorinated carbon on the chromatographic behavior and adsorption properties of molecules. For this purpose, the adsorption equilibria of α,α,α-trifluorotoluene, toluene, and other alkylbenzenes have been studied by means of nonlinear chromatography in a variety of acetonitrile/water eluents. Our results reveal that one single perfluorinated carbon is already enough to induce a drastic change in the adsorption properties of molecules on the perfluorinated stationary phase. In particular, it has been found that adsorption is monolayer if the perfluoroalkyl carbon is present but that, when this unit is missing, molecules arrange as multilayer stack structures. These findings can contribute to the understanding of molecular mechanisms of fluorous affinity. PMID:26047527

  18. Aspects of affine Toda field theory

    International Nuclear Information System (INIS)

    The report is devoted to properties of the affine Toda field theory, the intention being to highlight a selection of curious properties that should be explicable in terms of the underlying group theory but for which in most cases there are no explanation. The motivation for exploring the ideas contained in this report came principally from the recent work of Zamolodchikov concerning the two dimensional Ising model at critical temperature perturbed by a magnetic field. Hollowood and Mansfield pointed out that since Toda field theory is conformal the perturbation considered by Zamolodchikov might well be best regarded as a perturbation of a Toda field theory. This work made it seem plausible that the theory sought by Zamolodchikov was actually affine E8 Toda field theory. However, this connection required an imaginary value of the coupling constant. Investigations here concerning exact S-matrices use a perturbative approach based on real coupling and the results differ in various ways from those thought to correspond to perturbed conformal field theory. A further motivation is to explore the connection between conformal and perturbed conformal field theories in other contexts using similar ideas. (N.K.)

  19. Ultrashort Pulse Propagation in Nonlinear Dispersive Fibers

    Science.gov (United States)

    Agrawal, Govind P.

    Ultrashort optical pulses are often propagated through optical waveguides for a variety of applications including telecommunications and supercontinuum generation [1]. Typically the waveguide is in the form of an optical fiber but it can also be a planar waveguide. The material used to make the waveguide is often silica glass, but other materials such as silicon or chalcogenides have also been used in recent years. What is common to all such materials is they exhibit chromatic dispersion as well as the Kerr nonlinearity. The former makes the refractive index frequency dependent, whereas the latter makes it to depend on the intensity of light propagating through the medium [2]. Both of these effects become more important as optical pulses become shorter and more intense. For pulses not too short (pulse widths > 1 ns) and not too intense (peak powers fibers but similar results are expected for other waveguides made of different materials

  20. Inferring network topology via the propagation process

    CERN Document Server

    Zeng, An

    2013-01-01

    Inferring the network topology from the dynamics is a fundamental problem with wide applications in geology, biology and even counter-terrorism. Based on the propagation process, we present a simple method to uncover the network topology. The numerical simulation on artificial networks shows that our method enjoys a high accuracy in inferring the network topology. We find the infection rate in the propagation process significantly influences the accuracy, and each network is corresponding to an optimal infection rate. Moreover, the method generally works better in large networks. These finding are confirmed in both real social and nonsocial networks. Finally, the method is extended to directed networks and a similarity measure specific for directed networks is designed.

  1. M2 qualify laser beam propagation

    International Nuclear Information System (INIS)

    One of the most important properties of a laser resonator is the highly collimated or spatially coherent nature of the laser output beam. Laser beam diameter and quality factor M2 are significant parameters in a wide range of laser applications. This is because the spatial beam quality determines how closely the beam can be focused or how well the beam propagates over long distances without significant dispersion. In the present paper we have used three different methods to qualify the spatial structure of a laser beam propagating in free space, the results are obtained and discussed, and we have found that the Wigner distribution function is a powerful tool which allows a global characterization of any kind of beam

  2. Fractional Calculus in Wave Propagation Problems

    CERN Document Server

    Mainardi, Francesco

    2012-01-01

    Fractional calculus, in allowing integrals and derivatives of any positive order (the term "fractional" kept only for historical reasons), can be considered a branch of mathematical physics which mainly deals with integro-differential equations, where integrals are of convolution form with weakly singular kernels of power law type. In recent decades fractional calculus has won more and more interest in applications in several fields of applied sciences. In this lecture we devote our attention to wave propagation problems in linear viscoelastic media. Our purpose is to outline the role of fractional calculus in providing simplest evolution processes which are intermediate between diffusion and wave propagation. The present treatment mainly reflects the research activity and style of the author in the related scientific areas during the last decades.

  3. Study of social-network-based information propagation

    OpenAIRE

    Fan, Xiaoguang; 樊晓光.

    2013-01-01

    Information propagation has attracted increasing attention from sociologists, marketing researchers and Information Technology entrepreneurs. With the rapid developments in online and mobile social applications like Facebook, Twitter, and LinkedIn, large-scale, high-speed and instantaneous information dissemination becomes possible, spawning tremendous opportunities for electronic commerce. It is non-trivial to make an accurate analysis on how information is propagated due to the uncertainty...

  4. Propagator for finite range potentials: The case of reflection

    International Nuclear Information System (INIS)

    Following a previous study on the transmission propagator for a finite range potential, the problem of reflection is considered. It is found that the Laplace transform of the reflection propagator can be expressed in terms of the usual Fredholm determinant Δ and of a new similar determinant Γ, containing the peculiar characteristics of reflection. As an example, an array of delta potentials is considered. Moreover, a possible application to the calculation of quantum traversal time is shown

  5. Application of Wave Propagation to Pyroshock Analysis

    Directory of Open Access Journals (Sweden)

    M. Gherlone

    2004-01-01

    Full Text Available Pyroshocks are high frequency transients due to pyrotechnic devices used in aerospace engineering in order to deploy solar arrays and antennae, separate subsystems from the spacecraft or separate the spacecraft itself from the base stage booster; their prediction is usually complex and very time consuming.

  6. Development of a new leather intermediate: wet-bright with a high dye affinity

    OpenAIRE

    Bacardit Dalmases, Anna; González, Maria; van der Burgh, Stefan; Armengol, Jordi; Ollé Otero, Lluís

    2016-01-01

    In this work we develop a new tanning process (that we call wet-bright) that produces leather free of chromium, aldehydes, aldehyde precursors and organic solvents. Due to the mineral character of the new system, the leather offers a perfect dyeability and high dye affinity, allowing for very bright colors in all leather applications. The leathers offer a perfect dyeability due to the brilliant whiteness of the wet-bright intermediate. This new system consists of the application of Tanfor TTM...

  7. Laser beam propagation generation and propagation of customized light

    CERN Document Server

    Forbes, Andrew

    2014-01-01

    ""The text is easy to read and is accompanied by beautiful illustrations. It is an excellent book for anyone working in laser beam propagation and an asset for any library.""-Optics & Photonics News, July 2014

  8. Radial propagators and Wilson loops

    CERN Document Server

    Leupold, S; Leupold, Stefan; Weigert, Heribert

    1996-01-01

    We present a relation which connects the propagator in the radial (Fock-Schwinger) gauge with a gauge invariant Wilson loop. It is closely related to the well-known field strength formula and can be used to calculate the radial gauge propagator. The result is shown to diverge in four-dimensional space even for free fields, its singular nature is however naturally explained using the renormalization properties of Wilson loops with cusps and self-intersections. Using this observation we provide a consistent regularization scheme to facilitate loop calculations. Finally we compare our results with previous approaches to derive a propagator in Fock-Schwinger gauge.

  9. Laser Propagation in Uranium Hexafluoride

    Science.gov (United States)

    Chu, Danny

    1990-01-01

    Several researchers have simulated the laser pulse propagation through simple N-level systems; but, for UF _6 models, large CPU time and memory is required. In an attempt to efficiently yet accurately characterize laser pulse propagation through a UF _6 molecule, a model of UF_6 is created and analyzed by adiabatic excitation. A minimax numerical method is developed to solve the time -dependent Schrodinger equation and then applied to the study of laser excitation of UF_6 using various Gaussian pulses. The process of laser isotope separation is also discussed. The results from the laser excitation of UF_6 are used to simulate laser propagation through ^{235} UF_6.

  10. Study on the electromagnetic waves propagation characteristics in partially ionized plasma slabs

    Directory of Open Access Journals (Sweden)

    Zhi-Bin Wang

    2016-05-01

    Full Text Available Propagation characteristics of electromagnetic (EM waves in partially ionized plasma slabs are studied in this paper. Such features are significant to applications in plasma antennas, blackout of re-entry flying vehicles, wave energy injection to plasmas, and etc. We in this paper developed a theoretical model of EM wave propagation perpendicular to a plasma slab with a one-dimensional density inhomogeneity along propagation direction to investigate essential characteristics of EM wave propagation in nonuniform plasmas. Particularly, the EM wave propagation in sub-wavelength plasma slabs, where the geometric optics approximation fails, is studied and in comparison with thicker slabs where the geometric optics approximation applies. The influences of both plasma and collisional frequencies, as well as the width of the plasma slab, on the EM wave propagation characteristics are discussed. The results can help the further understanding of propagation behaviours of EM waves in nonuniform plasma, and applications of the interactions between EM waves and plasmas.

  11. Generalized affine transformation monoids on Galois rings

    OpenAIRE

    Yonglin Cao

    2006-01-01

    Let A be a ring with identity. The generalized affine transformation monoid Gaff(A) is defined as the set of all transformations on A of the form x↦xu+a (for all x∈A), where u,a∈A. We study the algebraic structure of the monoid Gaff(A) on a finite Galois ring A. The following results are obtained: an explicit description of Green's relations on Gaff(A); and an explicit description of the Schützenberger group of every ðÂ’Ÿ-class, which is shown to be isomorphic to the aff...

  12. Effectively nonlocal metric-affine gravity

    CERN Document Server

    Golovnev, Alexey; Sandstad, Marit

    2015-01-01

    In metric-affine theories of gravity such as the C-theories, the spacetime connection is associated to a metric that is nontrivially related to the physical metric. In this article, such theories are rewritten in terms of a single metric and it is shown that they can be recast as effectively nonlocal gravity. With some assumptions, known ghost-free theories with non-singular and cosmologically interesting properties may be recovered. Relations between different formulations are analysed at both perturbative and nonperturbative levels taking carefully into account subtleties with boundary conditions in the presence of integral operators in the action, and equivalences between theories related by nonlocal redefinitions of the fields are verified at the level of equations of motion. This suggests a possible geometrical interpretation of nonlocal gravity as an emergent property of non-Riemannian spacetime structure.

  13. Effectively nonlocal metric-affine gravity

    Science.gov (United States)

    Golovnev, Alexey; Koivisto, Tomi; Sandstad, Marit

    2016-03-01

    In metric-affine theories of gravity such as the C-theories, the spacetime connection is associated to a metric that is nontrivially related to the physical metric. In this article, such theories are rewritten in terms of a single metric, and it is shown that they can be recast as effectively nonlocal gravity. With some assumptions, known ghost-free theories with nonsingular and cosmologically interesting properties may be recovered. Relations between different formulations are analyzed at both perturbative and nonperturbative levels, taking carefully into account subtleties with boundary conditions in the presence of integral operators in the action, and equivalences between theories related by nonlocal redefinitions of the fields are verified at the level of equations of motion. This suggests a possible geometrical interpretation of nonlocal gravity as an emergent property of non-Riemannian spacetime structure.

  14. Affine connection form of Regge calculus

    CERN Document Server

    Khatsymovsky, V M

    2015-01-01

    Regge action is represented analogously to how the Palatini action for general relativity (GR) as some functional of the metric and a general connection as independent variables represents the Einstein-Hilbert action. The piecewise flat (or simplicial) spacetime of Regge calculus is equipped with some world coordinates and some piecewise affine metric which is completely defined by the set of edge lengths and the world coordinates of the vertices. The conjugate variables are the general nondegenerate matrices on the 3-simplices which play a role of a general discrete connection. Our previous result on some representation of the Regge calculus action in terms of the local Euclidean (Minkowsky) frame vectors and orthogonal connection matrices as independent variables is somewhat modified for the considered case of the general linear group GL(4,R) of the connection matrices. As a result, we have some action invariant w. r. t. arbitrary change of coordinates of the vertices (and related GL(4,R) transformations in...

  15. Propagation engineering in wireless communications

    CERN Document Server

    Ghasemi, Abdollah; Ghasemi, Farshid

    2016-01-01

    This book covers the basic principles for understanding radio wave propagation for common frequency bands used in radio-communications. This includes achievements and developments in propagation models for wireless communication. This book is intended to bridge the gap between the theoretical calculations and approaches to the applied procedures needed for radio links design in a proper manner. The authors emphasize propagation engineering by giving fundamental information and explain the use of basic principles together with technical achievements. This new edition includes additional information on radio wave propagation in guided media and technical issues for fiber optics cable networks with several examples and problems. This book also includes a solution manual - with 90 solved examples distributed throughout the chapters - and 158 problems including practical values and assumptions.

  16. Wave propagation in electromagnetic media

    CERN Document Server

    Davis, Julian L

    1990-01-01

    This is the second work of a set of two volumes on the phenomena of wave propagation in nonreacting and reacting media. The first, entitled Wave Propagation in Solids and Fluids (published by Springer-Verlag in 1988), deals with wave phenomena in nonreacting media (solids and fluids). This book is concerned with wave propagation in reacting media-specifically, in electro­ magnetic materials. Since these volumes were designed to be relatively self­ contained, we have taken the liberty of adapting some of the pertinent material, especially in the theory of hyperbolic partial differential equations (concerned with electromagnetic wave propagation), variational methods, and Hamilton-Jacobi theory, to the phenomena of electromagnetic waves. The purpose of this volume is similar to that of the first, except that here we are dealing with electromagnetic waves. We attempt to present a clear and systematic account of the mathematical methods of wave phenomena in electromagnetic materials that will be readily accessi...

  17. Reconstruction of nonlinear wave propagation

    Science.gov (United States)

    Fleischer, Jason W; Barsi, Christopher; Wan, Wenjie

    2013-04-23

    Disclosed are systems and methods for characterizing a nonlinear propagation environment by numerically propagating a measured output waveform resulting from a known input waveform. The numerical propagation reconstructs the input waveform, and in the process, the nonlinear environment is characterized. In certain embodiments, knowledge of the characterized nonlinear environment facilitates determination of an unknown input based on a measured output. Similarly, knowledge of the characterized nonlinear environment also facilitates formation of a desired output based on a configurable input. In both situations, the input thus characterized and the output thus obtained include features that would normally be lost in linear propagations. Such features can include evanescent waves and peripheral waves, such that an image thus obtained are inherently wide-angle, farfield form of microscopy.

  18. Quantitative Phosphoproteome Analysis of Lysophosphatidic Acid Induced Chemotaxis applying Dual-step ¹⁸O Labeling Coupled with Immobilized Metal-ion Affinity Chromatography

    Energy Technology Data Exchange (ETDEWEB)

    Ding, Shi-Jian; Wang, Yingchun; Jacobs, Jon M.; Qian, Weijun; Yang, Feng; Tolmachev, Aleksey V.; Du, Xiuxia; Wang, Wei; Moore, Ronald J.; Monroe, Matthew E.; Purvine, Samuel O.; Waters, Katrina M.; Heibeck, Tyler H.; Adkins, Joshua N.; Camp, David G.; Klemke, Richard L.; Smith, Richard D.

    2008-10-01

    Reversible protein phosphorylation is a central cellular regulatory mechanism in modulating protein activity and propagating signals within cellular pathways and networks. Development of more effective methods for the simultaneous identification of phosphorylation sites and quantification of temporal changes in protein phosphorylation could provide important insights into molecular signaling mechanisms in a variety of different cellular processes. Here we present an integrated quantitative phosphoproteomics approach and its applications for comparative analysis of Cos-7 cells in response to lysophosphatidic acid (LPA) gradient stimulation. The approach combines trypsin-catalyzed 16O/18O labeling plus 16O/18O-methanol esterification labeling for quantitation, a macro- Immobilized Metal-ion Affinity Chromatography trap for phosphopeptide enrichment, and a monolithic capillary column with integrated electrospray emitter. LC separation and MS/MS is followed by neutral loss-dependent MS/MS/MS for phosphopeptide identification using a linear ion trap (LTQ)-FT mass spectrometer and complementary searching algorithms for interpreting MS/MS spectra. Protein phosphorylation involved in various signaling pathways of cell migration were identified and quantified, such as mitogen-activated protein kinase 1, dual-specificity mitogen-activated protein kinase kinase 2, and dual-specificity tyrosine-phosphorylation regulated kinase 1b, and a number of Rho GTPase-activating proteins. These results demonstrate the efficiency of this quantitative phosphoproteomics approach and its application for rapid discovery of phosphorylation events associated with gradient sensing and cell chemotaxis.

  19. A thermal responsive affinity ligand for precipitation of sialylated proteins

    Directory of Open Access Journals (Sweden)

    Lindsay Arnold

    2016-01-01

    Full Text Available We report here the development of a thermal responsive affinity ligand specific to sialic acid, sialic acid containing oligosaccharides, glycoproteins, and other sialylated glycoconjugates. The ligand is a fusion protein of 40 repeats of pentapeptide of an elastin like polymer (ELP and the 21 kD sialic acid binding domain of a Vibrio cholera neuraminidase (VCNA. For cost-effective synthesis, the fusion protein was targeted to the periplasmic space of an E. coli lpp deletion mutant, resulting in its secretion to the growth medium. A pre-induction heat-shock step at 42 ˚C for 20 minutes was necessary to achieve high level expression of the ligand. Under optimized induction condition (18 ˚C, 0.1 mM IPTG and 48 hours of post-induction cultivation, the ligand was produced to about 100 mg/L. The ligand exhibited a transition temperature of 52 ˚C, which could be depressed to 37 ˚C with the addition of 0.5 M NaCl. Using fetuin as a model sialylated protein, the ligand was applied in an affinity precipitation process to illustrate its potential application in glycoprotein isolation. The ligand captured 100% fetuin from an aqueous solution when the molar ratio of ligand to fetuin was 10 to 1, which was lower than the expected for full titration of sialic acid on the glycoprotein by the lectin. Elution of fetuin from ligand was achieved with PBS buffer containing 2 mM sialic acid. To evaluate how protein and other contaminants influence the recovery of sialylated proteins, CHO medium was spiked into the fetuin solution. The predominant protein species in CHO medium was found to be albumin. Although its removal of over 94% was evident, purified fetuin contained some albumin due to its over-abundance. Additional experiments with albumin contaminant of varying concentrations showed that below 1 mg/L, albumin had no impact on the affinity precipitation, whereas above 10 mg/L, some albumin was co-purified with fetuin. However, even at 50 mg/ml, fetuin

  20. Classical affine W-algebras associated to Lie superalgebras

    International Nuclear Information System (INIS)

    In this paper, we prove classical affine W-algebras associated to Lie superalgebras (W-superalgebras), which can be constructed in two different ways: via affine classical Hamiltonian reductions and via taking quasi-classical limits of quantum affine W-superalgebras. Also, we show that a classical finite W-superalgebra can be obtained by a Zhu algebra of a classical affine W-superalgebra. Using the definition by Hamiltonian reductions, we find free generators of a classical W-superalgebra associated to a minimal nilpotent. Moreover, we compute generators of the classical W-algebra associated to spo(2|3) and its principal nilpotent. In the last part of this paper, we introduce a generalization of classical affine W-superalgebras called classical affine fractional W-superalgebras. We show these have Poisson vertex algebra structures and find generators of a fractional W-superalgebra associated to a minimal nilpotent

  1. Classical affine W-algebras associated to Lie superalgebras

    Energy Technology Data Exchange (ETDEWEB)

    Suh, Uhi Rinn, E-mail: uhrisu1@math.snu.ac.kr [Department of Mathematical Sciences, Seoul National University, GwanAkRo 1, Gwanak-Gu, Seoul 151-747 (Korea, Republic of)

    2016-02-15

    In this paper, we prove classical affine W-algebras associated to Lie superalgebras (W-superalgebras), which can be constructed in two different ways: via affine classical Hamiltonian reductions and via taking quasi-classical limits of quantum affine W-superalgebras. Also, we show that a classical finite W-superalgebra can be obtained by a Zhu algebra of a classical affine W-superalgebra. Using the definition by Hamiltonian reductions, we find free generators of a classical W-superalgebra associated to a minimal nilpotent. Moreover, we compute generators of the classical W-algebra associated to spo(2|3) and its principal nilpotent. In the last part of this paper, we introduce a generalization of classical affine W-superalgebras called classical affine fractional W-superalgebras. We show these have Poisson vertex algebra structures and find generators of a fractional W-superalgebra associated to a minimal nilpotent.

  2. Survey of propagation Model in wireless Network

    OpenAIRE

    Hemant Kumar Sharma; Sanjeev Sharma; Krishna Kumar Pandey

    2011-01-01

    To implementation of mobile ad hoc network wave propagation models are necessary to determine propagation characteristic through a medium. Wireless mobile ad hoc networks are self creating and self organizing entity. Propagation study provides an estimation of signal characteristics. Accurate prediction of radio propagation behaviour for MANET is becoming a difficult task. This paper presents investigation of propagation model. Radio wave propagation mechanisms are absorption, reflection, ref...

  3. Non-affine displacements in flexible polymer networks

    OpenAIRE

    Basu, Anindita; Wen, Qi; Mao, Xiaoming; Lubensky, T. C.; Janmey, Paul A.; Yodh, A. G.

    2010-01-01

    The validity of the affine assumption in model flexible polymer networks is explored. To this end, the displacements of fluorescent tracer beads embedded in polyacrylamide gels are quantified by confocal microscopy under shear deformation, and the deviations of these displacements from affine responses are recorded. Non-affinity within the gels is quantified as a function of polymer chain density and cross-link concentration. Observations are in qualitative agreement with current theories of ...

  4. Affine Vertex Operator Algebras and Modular Linear Differential Equations

    Science.gov (United States)

    Arike, Yusuke; Kaneko, Masanobu; Nagatomo, Kiyokazu; Sakai, Yuichi

    2016-05-01

    In this paper, we list all affine vertex operator algebras of positive integral levels whose dimensions of spaces of characters are at most 5 and show that a basis of the space of characters of each affine vertex operator algebra in the list gives a fundamental system of solutions of a modular linear differential equation. Further, we determine the dimensions of the spaces of characters of affine vertex operator algebras whose numbers of inequivalent simple modules are not exceeding 20.

  5. Affine Vertex Operator Algebras and Modular Linear Differential Equations

    Science.gov (United States)

    Arike, Yusuke; Kaneko, Masanobu; Nagatomo, Kiyokazu; Sakai, Yuichi

    2016-04-01

    In this paper, we list all affine vertex operator algebras of positive integral levels whose dimensions of spaces of characters are at most 5 and show that a basis of the space of characters of each affine vertex operator algebra in the list gives a fundamental system of solutions of a modular linear differential equation. Further, we determine the dimensions of the spaces of characters of affine vertex operator algebras whose numbers of inequivalent simple modules are not exceeding 20.

  6. Dirac cohomology for the degenerate affine Hecke Clifford algebra

    OpenAIRE

    Chan, Kei Yuen

    2013-01-01

    We define an analogue of the Dirac operator for the degenerate affine Hecke-Clifford algebra. A main result is to relate the central characters of the degenerate affine Hecke-Clifford algebra with the central characters of the Sergeev algebra via Dirac cohomology. The action of the Dirac operator on certain modules is also computed. Results in this paper could be viewed as a projective version of the Dirac cohomology of the degenerate affine Hecke algebra.

  7. DECISION TREE ANALYSIS OF THE PREDICTORS OF INTERNET AFFINITY

    OpenAIRE

    BUBAŠ, Goran; Kliček, Božidar; Hutinski, Željko

    2001-01-01

    A recently developed model of Internet affinity was used for survey design and data collection on variables that have potential influence on affinity for Internet use. A total of 600 Croatian students with access to the Internet at their college participated in this survey. The collected data were used for investigation of the relation between decision tree analysis and regression analysis of predictor variables of Internet affinity. Different predictors were found to influence two distinct c...

  8. Quantum Graphical Models and Belief Propagation

    International Nuclear Information System (INIS)

    Belief Propagation algorithms acting on Graphical Models of classical probability distributions, such as Markov Networks, Factor Graphs and Bayesian Networks, are amongst the most powerful known methods for deriving probabilistic inferences amongst large numbers of random variables. This paper presents a generalization of these concepts and methods to the quantum case, based on the idea that quantum theory can be thought of as a noncommutative, operator-valued, generalization of classical probability theory. Some novel characterizations of quantum conditional independence are derived, and definitions of Quantum n-Bifactor Networks, Markov Networks, Factor Graphs and Bayesian Networks are proposed. The structure of Quantum Markov Networks is investigated and some partial characterization results are obtained, along the lines of the Hammersley-Clifford theorem. A Quantum Belief Propagation algorithm is presented and is shown to converge on 1-Bifactor Networks and Markov Networks when the underlying graph is a tree. The use of Quantum Belief Propagation as a heuristic algorithm in cases where it is not known to converge is discussed. Applications to decoding quantum error correcting codes and to the simulation of many-body quantum systems are described

  9. From guided to optical microvave propagation

    International Nuclear Information System (INIS)

    A wide theoretical study on quasi-optical microwave propagation has been carried out in the range 3 GHz - 300 GHz. A high power TEMOO Gaussian beam can be propagated for long distances with low losses if a nearly-confocal system of mirrors is used as phase corrector. The theory of beam waveguides using elliptic paraboloidal reflectors has been critically revisited and developed. All the kind of losses (diffraction, matching, truncation, divergence, ohmic, atmospheric, depolarization, misalignment) have been examinated into detail. Criteria to find the best design parameters of a quasi-optical transmission line are given once the frequency, the power and the available room are known. In general, a well designed Reflecting Beam Waveguide should permit the propagation of several MW in CW without a sensible beam shape deformation, and with total losses of about a fraction of % in 10 meters. Several examples at different frequencies are herein reported, and applications to high power Electron Cyclotron Heating and Lower Hybrid Heating of a plasma find a good solution using quasi-optical schemes. The wide bandwidth, the fact of having a single line needing no cooling and without requirements of high mechanical precision (as in certain waveguide components at high frequency), are other advantages of the Reflecting Beam Waveguide System (RBWS) which have been examined in this work

  10. Mesoporous Few-Layer Graphene Platform for Affinity Biosensing Application.

    Science.gov (United States)

    Ali, Md Azahar; Singh, Chandan; Mondal, Kunal; Srivastava, Saurabh; Sharma, Ashutosh; Malhotra, Bansi D

    2016-03-30

    A label-free, highly reproducible, sensitive, and selective biosensor is proposed using antiapolipoprotein B 100 (AAB) functionalized mesoporous few-layer reduced graphene oxide and nickel oxide (rGO-NiO) nanocomposite for detection of low density lipoprotein (LDL) molecules. The formation of mesoporous rGO-NiO composite on indium tin oxide conductive electrode has been accomplished via electrophoretic technique using colloidal suspension of rGO sheets and NiO nanoparticles. This biosensor shows good stability obtained by surface conjugation of antibody AAB molecules with rGO-NiO matrix by EDC-NHS coupling chemistry. The defect-less few layer rGO sheets, NiO nanoparticles (nNiO) and formation of nanocomposite has been confirmed by Raman mapping, electron microscopic studies, X-ray diffraction, and electrochemical techniques. The synthesized rGO-NiO composite is mesoporous dominated with a small percentage of micro and macroporous structure as is evident by the results of Brunauer-Emmett-Teller experiment. Further, the bioconjugation of AAB with rGO-NiO has been investigated by Fourier transform-infrared spectroscopy studies. The kinetic studies for binding of antigen-antibody (LDL-AAB) and analytical performance of this biosensor have been evaluated by the impedance spectroscopic method. This biosensor exhibits an excellent sensitivity of 510 Ω (mg/dL)(-1) cm(-2) for detection of LDL molecules and is sensitive to 5 mg/dL concentration of LDL in a wide range of 0-130 mg/dL. Thus, this fabricated biosensor is an efficient and highly sensitive platform for the analysis of other antigen-antibody interactions and biomolecules detection. PMID:26950488

  11. Generalized Transform Analysis of Affine Processes and Applications in Finance

    OpenAIRE

    Hui Chen; Scott Joslin

    2012-01-01

    Nonlinearity is an important consideration in many problems of finance and economics, such as pricing securities and solving equilibrium models. This article provides analytical treatment of a general class of nonlinear transforms for processes with tractable conditional characteristic functions. We extend existing results on characteristic function-based transforms to a substantially wider class of nonlinear functions while maintaining low dimensionality by avoiding the need to compute the d...

  12. Laser Beam Propagation Through Inhomogeneous Media with Shock-Like Profiles: Modeling and Computing

    Science.gov (United States)

    Adamovsky, Grigory; Ida, Nathan

    1997-01-01

    Wave propagation in inhomogeneous media has been studied for such diverse applications as propagation of radiowaves in atmosphere, light propagation through thin films and in inhomogeneous waveguides, flow visualization, and others. In recent years an increased interest has been developed in wave propagation through shocks in supersonic flows. Results of experiments conducted in the past few years has shown such interesting phenomena as a laser beam splitting and spreading. The paper describes a model constructed to propagate a laser beam through shock-like inhomogeneous media. Numerical techniques are presented to compute the beam through such media. The results of computation are presented, discussed, and compared with experimental data.

  13. Self-affine sets and the continuity of subadditive pressure

    OpenAIRE

    Shmerkin, Pablo

    2013-01-01

    The affinity dimension is a number associated to an iterated function system of affine maps, which is fundamental in the study of the fractal dimensions of self-affine sets. De-Jun Feng and the author recently solved a folklore open problem, by proving that the affinity dimension is a continuous function of the defining maps. The proof also yields the continuity of a topological pressure arising in the study of random matrix products. I survey the definition, motivation and main properties of...

  14. On invariant measures of finite affine type tilings

    OpenAIRE

    Petite, S.

    2004-01-01

    In this paper, we consider tilings of the hyperbolic 2-space, built with a finite number of polygonal tiles, up to affine transformation. To such a tiling T, we associate a space of tilings: the continuous hull Omega(T) on which the affine group acts. This space Omega(T) inherits a solenoid structure whose leaves correspond to the orbits of the affine group. First we prove the finite harmonic measures of this laminated space correspond to finite invariant measures for the affine group action....

  15. Biomimetic design of affinity peptide ligand for capsomere of virus-like particle.

    Science.gov (United States)

    Li, Yanying; Liu, Xiaodan; Dong, Xiaoyan; Zhang, Lin; Sun, Yan

    2014-07-22

    Virus-like particle (VLP) of murine polyomavirus (MPV) is a T = 7d icosahedral capsid that self-assembles from 72 capsomeres (Caps), each of which is a pentamer of major coat protein VP1. VLP has great potential in vaccinology, gene therapy, drug delivery, and materials science. However, its application is hindered by high cost downstream processes, leading to an urgent demand of a highly efficient affinity ligand for the separation and purification of Cap by affinity chromatography. Herein a biomimetic design strategy of an affinity peptide ligand of Cap has been developed on the basis of the binding structure of the C-terminus of minor coat protein (VP2-C) on the inner surface of Cap. The molecular interactions between VP2-C and Cap were first examined using all-atom molecular dynamics (MD) simulations coupled with the molecular mechanics/Poisson-Boltzmann surface area (MM/PBSA) method, where V283, P285, D286, W287, L289, and Y296 of VP2-C were identified as the hot spots. An affinity peptide library (DWXLXLXY, X denotes arbitrary amino acids except cysteine) was then constructed for virtual screening sequently by docking with AUTODOCK VINA, binding structure comparison, and final docking with ROSETTA FlexPepDock. Ten peptide candidates were selected and further confirmed by MD simulations and MM/PBSA, where DWDLRLLY was found to have the highest affinity to Cap. In DWDLRLLY, six residues are favorable for the binding, including W2, L4, L6 and Y8 inheriting from VP2-C, and R5 and L7 selected in the virtual screening. This confirms the high efficiency and accuracy of the biomimetic design strategy. DWDLRLLY was then experimentally validated by a one-step purification of Cap from crude cell lysate using affinity chromatography with the octapeptide immobilized on Sepharose gel. The purified Caps were observed to self-assemble into VLP with consistent structure of authentic MPV. PMID:24976378

  16. The physical theory and propagation model of THz atmospheric propagation

    Energy Technology Data Exchange (ETDEWEB)

    Wang, R; Yao, J Q; Xu, D G; Wang, J L; Wang, P, E-mail: wangran19861014@163.com [College of Precision Instrument and Opto-electronics Engineering, Institute of Laser and Opto-electronics, Tianjin University, Tianjin 300072 (China)

    2011-02-01

    Terahertz (THz) radiation is extensively applied in diverse fields, such as space communication, Earth environment observation, atmosphere science, remote sensing and so on. And the research on propagation features of THz wave in the atmosphere becomes more and more important. This paper firstly illuminates the advantages and outlook of THz in space technology. Then it introduces the theoretical framework of THz atmospheric propagation, including some fundamental physical concepts and processes. The attenuation effect (especially the absorption of water vapor), the scattering of aerosol particles and the effect of turbulent flow mainly influence THz atmosphere propagation. Fundamental physical laws are illuminated as well, such as Lamber-beer law, Mie scattering theory and radiative transfer equation. The last part comprises the demonstration and comparison of THz atmosphere propagation models like Moliere(V5), SARTre and AMATERASU. The essential problems are the deep analysis of physical mechanism of this process, the construction of atmospheric propagation model and databases of every kind of material in the atmosphere, and the standardization of measurement procedures.

  17. Propagation of heavy cosmic-ray nuclei

    International Nuclear Information System (INIS)

    Techniques for modeling the propagation of heavy cosmic-ray nuclei, and the required atomic and nuclear data, are assembled in this paper. Emphasis is on understanding nuclear composition in the charge range 3< Z<83. Details of the application of ''matrix methods'' above a few hundred meV per nucleon, a new treatment of electron capture decay, and a new table of cosmic-ray-stable isotopes are presented. Computation of nuclear fragmentation cross sections, stopping power, and electron stripping and attachment are briefly reviewed

  18. Semidirect algorithms in electron propagator calculations

    Energy Technology Data Exchange (ETDEWEB)

    Zakrzewski, V.G.; Ortiz, J.V. [Univ. of New Mexico, Albuquerque, NM (United States)

    1994-12-31

    Electron propagator calculations have been executed with a semi-direct algorithm that generates only a subset of transformed electron repulsion integrals and that takes advantage of Abelian point group symmetry. Diagonal self-energy expressions that are advantageous for large molecules are employed. Illustrative calculations with basis sets in excess of 200 functions include evaluations of the ionization energies of C{sup 2{minus}}{sub 7} and Zn(C{sub 5}H{sub 5}){sub 2}. In the former application, a bound dianion is obtained for a D{sub 3h} structure. In the latter, many final states of the same symmetry are calculated without difficulty.

  19. Propagation of an ultra intense laser pulse in an under dense plasma: production of quasi monoenergetic electron beams and development of applications; Propagation d'une impulsion laser ultra-intense dans un plasma sous-dense: generation de faisceaux d'electrons quasi monoenergetiques et developpement d'applications

    Energy Technology Data Exchange (ETDEWEB)

    Glinec, Y

    2006-09-15

    This experimental study concerns the generation of electron beams with original properties. These electrons beams originate from the interaction of an ultra-intense and short laser pulse with a gas jet. Previously, these electron beams had a large divergence and a broad spectrum. A major improvement in this field was achieved when an electron beam with low divergence (10 mrad) and a peaked spectrum (170 MeV) was observed during this thesis, using a new single shot electron spectrometer. A parametric study of the interaction allowed to observe the evolution of the electron beam. Experiments have been carried out to deepen the characterization of the electron beam. The observation of transition radiation generated by the electrons at an interface shows that the electron beam interacts with the laser pulse during the acceleration. Radial oscillations of the electron beam around the laser axis, named betatron oscillations, were also observed on the electron spectra. Such a quasi-monoenergetic spectrum is essential for many applications. In order to justify the interest of this electron beam, several applications are presented: a sub-milli-metric gamma-ray radiography of dense objects, a dose profile of the electron beam comparable to present capabilities of photon sources for radiotherapy, a very short temporal profile useful for water radiolysis and the generation of a bright X-ray source with low divergence. (author)

  20. Wave propagation in nanostructures nonlocal continuum mechanics formulations

    CERN Document Server

    Gopalakrishnan, Srinivasan

    2013-01-01

    Wave Propagation in Nanostructures describes the fundamental and advanced concepts of waves propagating in structures that have dimensions of the order of nanometers. The book is fundamentally based on non-local elasticity theory, which includes scale effects in the continuum model. The book predominantly addresses wave behavior in carbon nanotubes and graphene structures, although the methods of analysis provided in this text are equally applicable to other nanostructures. The book takes the reader from the fundamentals of wave propagation in nanotubes to more advanced topics such as rotating nanotubes, coupled nanotubes, and nanotubes with magnetic field and surface effects. The first few chapters cover the basics of wave propagation, different modeling schemes for nanostructures and introduce non-local elasticity theories, which form the building blocks for understanding the material provided in later chapters. A number of interesting examples are provided to illustrate the important features of wave behav...