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Sample records for affects cluster root

  1. How the spatial variation of tree roots affects slope stability

    Science.gov (United States)

    Mao, Zhun; Stokes, A.; Jourdan, C.; Rey, H.; Courbaud, B.; Saint-André, L.

    2010-05-01

    It is now widely recognized that plant roots can reinforce soil against shallow mass movement. Although studies on the interactions between vegetation and slope stability have significantly augmented in recent years, a clear understanding of the spatial dynamics of root reinforcement (through additional cohesion by roots) in subalpine forest is still limited, especially with regard to the roles of different forest management strategies or ecological landscapes. The architecture of root systems is important for soil cohesion, but in reality it is not possible to measure the orientation of each root in a system. Therefore, knowledge on the effect of root orientation and anisotropy on root cohesion on the basis of in situ data is scanty. To determine the effect of root orientation in root cohesion models, we investigated root anisotropy in two mixed, mature, naturally regenerated, subalpine forests of Norway spruce (Picea abies), and Silver fir (Abies alba). Trees were clustered into islands, with open spaces between each group, resulting in strong mosaic heterogeneity within the forest stand. Trenches within and between clusters of trees were dug and root distribution was measured in three dimensions. We then simulated the influence of different values for a root anisotropy correction factor in forests with different ecological structures and soil depths. Using these data, we have carried out simulations of slope stability by calculating the slope factor of safety depending on stand structure. Results should enable us to better estimate the risk of shallow slope failure depending on the type of forest and species.

  2. Secondary chronic cluster headache due to trigeminal nerve root compression.

    Science.gov (United States)

    Mjåset, Christer; Russell, M B; Russell, M Bjørn

    2010-12-01

    A 50-year-old woman had a gradual onset of chronic headache located in the right temporal region and a burning sensation in the root of the tongue which over a year evolved into chronic cluster headache with a milder chronic headache in-between the severe cluster headache attacks. A cerebral magnetic resonance imaging (MRI) showed vascular compression of the trigeminal nerve root on the pain side. Neurosurgery microvascular decompression relieved the patient's chronic cluster headache, the chronic intermittent headache and the burning tongue sensation. The effect was persistent at a 1 year follow-up. Patients with atypical symptoms of cluster headache should be examined with cerebral MRI angiography of arteries and veins to exclude symptomatic causes. PMID:20384588

  3. How up- or downslope anchoring affects root reinforcement

    Science.gov (United States)

    Giadrossich, Filippo; Schwarz, Massimiliano; Cohen, Denis; Niedda, Marcello

    2016-04-01

    Root reinforcement is important for slope stability. In addition to the important contribution of roots to shear strength along the slip surface, root networks are also recognized to impart stabilization through lateral (parallel to slope) redistribution of forces under tension. The most common method to measure lateral root reinforcement is a pullout test where one root or a bundle of root is pulled out of the soil matrix. This condition represents the case where roots within the mass of a landslide slip out from the upper stable part of the slope. There is also, however, the situation where roots anchored in the upper stable part of the slope slip out from the sliding mass. In the latter it is difficult to quantify root reinforcement and no study has discussed this mechanism. We carried out a new series of laboratory and field experiments using Douglas fir (Pseudotsuga menziesii) roots to quantify how up- or downslope anchoring affects root reinforcement. In addition, we carried out new field pullout tests on coarse roots (larger that 2 mm in diameter, up to 47 mm). Then, considering the state-of-the-art of root reinforcement modeling (the Root Bundle Model), we integrated results from our measurements into the model to verify the magnitude of this effect on overall root reinforcement at the stand scale. Results indicate that the ratio between pullout force and force transferred to the root during soil slip ranges between 0.5 and 1. This indicates that measured pullout force always overestimate the contribution of lateral slipping out roots in situations where the soil slide from anchored roots. This is general the case for root with diameter up to 3-4 mm. Root-size distribution is also a key factor influencing root reinforcement at the forest-stand scale. As most coarse roots break along tension cracks while fine roots slip out, the effect discussed in this study on root reinforcement modeling is negligible when coarse-root diameter classes are represented. Our

  4. Effect of parameter choice in root water uptake models – the arrangement of root hydraulic properties within the root architecture affects dynamics and efficiency of root water uptake

    OpenAIRE

    Bechmann, M.; Schneider, C; Carminati, A.; Vetterlein, D.; Attinger, S.; Hildebrandt, A

    2014-01-01

    Detailed three-dimensional models of root water uptake have become increasingly popular for investigating the process of root water uptake. However, they suffer from a lack of information on important parameters, particularly on the spatial distribution of root axial and radial conductivities, which vary greatly along a root system. In this paper we explore how the arrangement of those root hydraulic properties and branching within the root system affects modelled uptake dynamics, xylem water...

  5. Plant Hormones: How They Affect Root Formation.

    Science.gov (United States)

    Reinhard, Diana Hereda

    This science study aid, produced by the U.S. Department of Agriculture, includes a series of plant rooting activities for secondary science classes. The material in the pamphlet is written for students and includes background information on plant hormones, a vocabulary list, and five learning activities. Objectives, needed materials, and…

  6. Tree species richness affecting fine root biomass in European forests

    Science.gov (United States)

    Finér, Leena; Domisch, Timo; Vesterdal, Lars; Dawud, Seid M.; Raulund-Rasmussen, Karsten

    2016-04-01

    Fine roots are an important factor in the forest carbon cycle, contributing significantly to below-ground biomass and soil carbon storage. Therefore it is essential to understand the role of the forest structure, indicated by tree species diversity in controlling below-ground biomass and managing the carbon pools of forest soils. We studied how tree species richness would affect fine root biomass and its distribution in the soil profile and biomass above- and below-ground allocation patterns of different tree species. Our main hypothesis was that increasing tree species richness would lead to below-ground niche differentiation and more efficient soil exploitation by the roots, resulting in a higher fine root biomass in the soil. We sampled fine roots of trees and understorey vegetation in six European forest types in Finland, Poland, Germany, Romania, Italy and Spain, representing boreal, temperate and Mediterranean forests, established within the FunDivEUROPE project for studying the effects of tree species diversity on forest functioning. After determining fine root biomasses, we identified the percentages of different tree species in the fine root samples using the near infrared reflectance spectroscopy (NIRS) method. Opposite to our hypothesis we did not find any general positive relationship between tree species richness and fine root biomass. A weak positive response found in Italy and Spain seemed to be related to dry environmental conditions during Mediterranean summers. At the Polish site where we could sample deeper soil layers (down to 40 cm), we found more tree fine roots in the deeper layers under species-rich forests, as compared to the monocultures, indicating the ability of trees to explore more resources and to increase soil carbon stocks. Tree species richness did not affect biomass allocation patterns between above- and below-ground parts of the trees.

  7. Dynamic parallel ROOT facility clusters on the Alice Environment

    International Nuclear Information System (INIS)

    The ALICE collaboration has developed a production environment (AliEn) that implements the full set of the Grid tools enabling the full offline computational work-flow of the experiment, simulation, reconstruction and data analysis, in a distributed and heterogeneous computing environment. In addition to the analysis on the Grid, ALICE uses a set of local interactive analysis facilities installed with the Parallel ROOT Facility (PROOF). PROOF enables physicists to analyze medium-sized (order of 200-300 TB) data sets on a short time scale. The default installation of PROOF is on a static dedicated cluster, typically 200-300 cores. This well-proven approach, has its limitations, more specifically for analysis of larger datasets or when the installation of a dedicated cluster is not possible. Using a new framework called PoD (Proof on Demand), PROOF can be used directly on Grid-enabled clusters, by dynamically assigning interactive nodes on user request. The integration of Proof on Demand in the AliEn framework provides private dynamic PROOF clusters as a Grid service. This functionality is transparent to the user who will submit interactive jobs to the AliEn system.

  8. Root-Zone Glyphosate Exposure Adversely Affects Two Ditch Species

    Directory of Open Access Journals (Sweden)

    Lyndsay E. Saunders

    2013-12-01

    Full Text Available Glyphosate, one of the most applied herbicides globally, has been extensively studied for its effects on non-target organisms. In the field, following precipitation, glyphosate runs off into agricultural ditches where it infiltrates into the soil and thus may encounter the roots of vegetation. These edge-of-field ditches share many characteristics with wetlands, including the ability to reduce loads of anthropogenic chemicals through uptake, transformation, and retention. Different species within the ditches may have a differential sensitivity to exposure of the root zone to glyphosate, contributing to patterns of abundance of ruderal species. The present laboratory experiment investigated whether two species commonly found in agricultural ditches in southcentral United States were affected by root zone glyphosate in a dose-dependent manner, with the objective of identifying a sublethal concentration threshold. The root zone of individuals of Polygonum hydropiperoides and Panicum hemitomon were exposed to four concentrations of glyphosate. Leaf chlorophyll content was measured, and the ratio of aboveground biomass to belowground biomass and survival were quantified. The findings from this study showed that root zone glyphosate exposure negatively affected both species including dose-dependent reductions in chlorophyll content. P. hydropiperdoides showed the greatest negative response, with decreased belowground biomass allocation and total mortality at the highest concentrations tested.

  9. How Clustering Affects Epidemics in Random Networks

    CERN Document Server

    Coupechoux, Emilie

    2012-01-01

    Motivated by the analysis of social networks, we study a model of random networks that has both a given degree distribution and a tunable clustering coefficient. We consider two types of growth processes on these graphs: diffusion and symmetric threshold model. The diffusion process is inspired from epidemic models. It is characterized by an infection probability, each neighbor transmitting the epidemic independently. In the symmetric threshold process, the interactions are still local but the propagation rule is governed by a threshold (that might vary among the different nodes). An interesting example of symmetric threshold process is the contagion process, which is inspired by a simple coordination game played on the network. Both types of processes have been used to model spread of new ideas, technologies, viruses or worms and results have been obtained for random graphs with no clustering. In this paper, we are able to analyze the impact of clustering on the growth processes. While clustering inhibits th...

  10. How Dark Energy Affects the MOND Theory in Clusters

    OpenAIRE

    Man Ho Chan

    2012-01-01

    Modified Newtonian Dynamics (MOND) is one of the successful theories to explain the dark matter problem in galaxies. However, the data from clusters and the cosmic microwave background (CMB) indicate some dark matter should exist in larger scales. In addition, recent dynamical studies of clusters show that the effect of dark energy should not be ignored in cluster scale. In this article, I will demonstrate how dark energy affects the cluster mass calculation by using MOND. Also, I will show t...

  11. Do cluster properties affect the quenching rate?

    CERN Document Server

    Raichoor, A

    2014-01-01

    The quenching rate is known to depend on galaxy stellar mass and environment, however, possible dependences on the hosting halo properties, such as mass, richness, and dynamical status, are still debated. The determination of these dependences is hampered by systematics, induced by noisy estimates of cluster mass or by the lack of control on galaxy stellar mass, which may mask existing trends or introduce fake trends. We studied a sample of local clusters (20 with 0.0214), selected independent of the galaxy properties under study, having homogeneous optical photometry and X-ray estimated properties. Using those top quality measurements of cluster mass, hence of cluster scale, richness, iron abundance, and cooling time/presence of a cool-core, we study the simultaneous dependence of quenching on these cluster properties on galaxy stellar mass M and normalised cluster-centric distance r/r200. We found that the quenching rate can be completely described by two variables only, galaxy stellar mass and normalised c...

  12. How clustering dark energy affects matter perturbations

    Science.gov (United States)

    Mehrabi, A.; Basilakos, S.; Pace, F.

    2015-09-01

    The rate of structure formation in the Universe is different in homogeneous and clustered dark energy models. The degree of dark energy clustering depends on the magnitude of its effective sound speed c2_eff and for c2_eff=0 dark energy clusters in a similar fashion to dark matter while for c2_eff=1 it stays (approximately) homogeneous. In this paper we consider two distinct equations of state for the dark energy component, wd = const and w_d=w_0+w_1(z/1+z) with c2_eff as a free parameter and we try to constrain the dark energy effective sound speed using current available data including Type Ia supernovae, baryon acoustic oscillation, cosmic microwave background shift parameter (Planck and WMAP), Hubble parameter, big bang nucleosynthesis and the growth rate of structures fσ8(z). At first we derive the most general form of the equations governing dark matter and dark energy clustering under the assumption that c2_eff=const. Finally, performing an overall likelihood analysis we find that the likelihood function peaks at c2_eff=0; however, the dark energy sound speed is degenerate with respect to the cosmological parameters, namely Ωm and wd.

  13. Secretion activity of white lupin’s cluster roots influences bacterial abundance, function and community structure

    OpenAIRE

    Weisskopf, Laure; Fromin, Nathalie; Tomasi, Nicola; Aragno, Michel; Martinoia, Enrico

    2007-01-01

    White lupin (Lupinus albus L. cv. Amiga) reacts to phosphate deficiency by producing cluster roots which exude large amounts of organic acids. The detailed knowledge of the excretion physiology of the different root parts makes it a good model plant to study plant-bacteria interaction. Since the effect of the organic acid exudation by cluster roots on the rhizosphere microflora is still poorly understood, we investigated the abundance, diversity and functions of bacteria associated with the c...

  14. Sulfur nutrient availability regulates root elongation by affecting root indole-3-acetic acid levels and the stem cell niche

    Institute of Scientific and Technical Information of China (English)

    Qing Zhao; Yu Wu; Lei Gao; Jun Ma; Chuan-You Li; Cheng-Bin Xiang

    2014-01-01

    Sulfur is an essential macronutrient for plants with numerous biological functions. However, the influence of sulfur nutrient availability on the regulation of root development remains largely unknown. Here, we report the response of Arabidopsis thaliana L. root development and growth to different levels of sulfate, demonstrating that low sulfate levels promote the primary root elongation. By using various reporter lines, we examined in vivo IAA level and distribution, cel division, and root meristem in response to different sulfate levels. Meanwhile the dynamic changes of in vivo cysteine, glutathione, and IAA levels were measured. Root cysteine, glutathione, and IAA levels are positively correlated with external sulfate levels in the physiological range, which eventual y affect root system architecture. Low sulfate levels also downregulate the genes involved in auxin biosynthesis and transport, and elevate the accumulation of PLT1 and PLT2. This study suggests that sulfate level affects the primary root elongation by regulating the endogenous auxin level and root stem cel niche maintenance.

  15. Deriving reliable fundamental parameters of PMS-rich star clusters affected by differential reddening

    CERN Document Server

    Bonatto, Charles; Lima, Eliade F

    2011-01-01

    We present an approach that improves the search for reliable astrophysical parameters (e.g. age, mass, and distance) of differentially-reddened, pre-main sequence-rich star clusters. It involves simulating conditions related to the early-cluster phases, in particular the differential and foreground reddenings, and internal age spread. Given the loose constraints imposed by these factors, the derivation of parameters based only on photometry may be uncertain, especially for the poorly-populated clusters. We consider a wide range of cluster {\\em (i)} mass and {\\em (ii)} age, and different values of {\\em (iii)} distance modulus, {\\em (iv)} differential and {\\em (v)} foreground reddenings. Photometric errors and their relation with magnitude are also taken into account. We also investigate how the presence of unresolved binaries affect the derived parameters. For each set of {\\em (i)} - {\\em (v)} we build the corresponding model Hess diagram, and compute the root mean squared residual with respect to the observed...

  16. A mathematical model for investigating the effect of cluster roots on plant nutrient uptake

    KAUST Repository

    Zygalakis, K. C.

    2012-04-01

    Cluster roots are thought to play an important role in mediating nutrient uptake by plants. In this paper we develop a mathematical model for the transport and uptake of phosphate by a single root. Phosphate is assumed to diffuse in the soil fluid phase and can also solubilised due to citrate exudation. Using multiple scale homogenisation techniques we derive an effective model that accounts for the cumulative effect of citrate exudation and phosphate uptake by cluster roots whilst still retaining all the necessary information about the microscale geometry and effects. © 2012 EDP Sciences and Springer.

  17. A mathematical model for investigating the effect of cluster roots on plant nutrient uptake

    Science.gov (United States)

    Zygalakis, K. C.; Roose, T.

    2012-04-01

    Cluster roots are thought to play an important role in mediating nutrient uptake by plants. In this paper we develop a mathematical model for the transport and uptake of phosphate by a single root. Phosphate is assumed to diffuse in the soil fluid phase and can also solubilised due to citrate exudation. Using multiple scale homogenisation techniques we derive an effective model that accounts for the cumulative effect of citrate exudation and phosphate uptake by cluster roots whilst still retaining all the necessary information about the microscale geometry and effects.

  18. Root Cluster Formation and Citrate Exudation of White Lupin (Lupinus albus L.) as Related to Phosphorus Availability

    Institute of Scientific and Technical Information of China (English)

    Chun-Jian LI; Rui-Xia LIANG

    2005-01-01

    A split-root system was used to investigate whether the external or internal P concentration controls root cluster formation and citrate exudation in white lupin (Lupinus albus L.) grown under controlled conditions. In spite of low P concentrations in the shoots and roots of the -P plant, its dry weight was not reduced compared with the +P plant. Supplying external P (0.25 mmol/L) to one root halfresulted in an increase in P concentration not only in the shoot, but also in the P-deprived root half, indicating P cycling within the plants. Omitting P from both split-root pots stimulated root cluster formation in both root halves,whereas P supply to one root halfstimulated root cluster formation at the beginning of the treatment. Neither P supply to just one root half continuously nor resupply of P to one root half after 19 d of P starvation inhibited root cluster formation on the P-deprived side, although the concentration of P in this root half and shoot increased markedly. The results indicate that root cluster formation in L. albus is controlled by both shoot and root P concentrations. The rates of citrate exudation by both root halves with P deficiency were higher than those of the one root half supplied with P only. In the treatment with one root half supplied with P, the rates of citrate exudation by either the P-supplied or -deprived root halves were almost the same,regardless of P concentration in the roots. The results suggest that internal P concentration controls root cluster formation and citrate exudation in white lupin, but these processes may be regulated by different mechanisms.

  19. MES buffer affects Arabidopsis root apex zonation and root growth by suppressing superoxide generation in root apex

    Directory of Open Access Journals (Sweden)

    Tomoko eKagenishi

    2016-02-01

    Full Text Available In plants, growth of roots and root hairs is regulated by the fine cellular control of pH and reactive oxygen species. MES, 2-(N-morpholinoethanesulfonic acid as one of the Good’s buffers has broadly been used for buffering medium, and it is thought to suit for plant growth with the concentration at 0.1% (w/v because the buffer capacity of MES ranging pH 5.5-7.0 (for Arabidopsis, pH 5.8. However, many reports have shown that, in nature, roots require different pH values on the surface of specific root apex zones, namely meristem, transition zone and elongation zone. Despite the fact that roots always grow on a media containing buffer molecule, little is known about impact of MES on root growth. Here, we have checked the effects of different concentrations of MES buffer using growing roots of Arabidopsis thaliana. Our results show that 1% of MES significantly inhibited root growth, the number of root hairs and length of meristem, whereas 0.1% promoted root growth and root apex area (region spanning from the root tip up to the transition zone. Furthermore, superoxide generation in root apex disappeared at 1% of MES. These results suggest that MES disturbs normal root morphogenesis by changing the reactive oxygen species (ROS homeostasis in root apex.

  20. MES Buffer Affects Arabidopsis Root Apex Zonation and Root Growth by Suppressing Superoxide Generation in Root Apex.

    Science.gov (United States)

    Kagenishi, Tomoko; Yokawa, Ken; Baluška, František

    2016-01-01

    In plants, growth of roots and root hairs is regulated by the fine cellular control of pH and reactive oxygen species (ROS). MES, 2-(N-morpholino)ethanesulfonic acid as one of the Good's buffers has broadly been used for buffering medium, and it is thought to suit for plant growth with the concentration at 0.1% (w/v) because the buffer capacity of MES ranging pH 5.5-7.0 (for Arabidopsis, pH 5.8). However, many reports have shown that, in nature, roots require different pH values on the surface of specific root apex zones, namely meristem, transition zone, and elongation zone. Despite the fact that roots always grow on a media containing buffer molecule, little is known about impact of MES on root growth. Here, we have checked the effects of different concentrations of MES buffer using growing roots of Arabidopsis thaliana. Our results show that 1% of MES significantly inhibited root growth, the number of root hairs and length of meristem, whereas 0.1% promoted root growth and root apex area (region spanning from the root tip up to the transition zone). Furthermore, superoxide generation in root apex disappeared at 1% of MES. These results suggest that MES disturbs normal root morphogenesis by changing the ROS homeostasis in root apex. PMID:26925066

  1. Molecular analysis of SCARECROW genes expressed in white lupin cluster roots.

    Science.gov (United States)

    Sbabou, Laila; Bucciarelli, Bruna; Miller, Susan; Liu, Junqi; Berhada, Fatiha; Filali-Maltouf, Abdelkarim; Allan, Deborah; Vance, Carroll

    2010-03-01

    The Scarecrow (SCR) transcription factor plays a crucial role in root cell radial patterning and is required for maintenance of the quiescent centre and differentiation of the endodermis. In response to phosphorus (P) deficiency, white lupin (Lupinus albus L.) root surface area increases some 50-fold to 70-fold due to the development of cluster (proteoid) roots. Previously it was reported that SCR-like expressed sequence tags (ESTs) were expressed during early cluster root development. Here the cloning of two white lupin SCR genes, LaSCR1 and LaSCR2, is reported. The predicted amino acid sequences of both LaSCR gene products are highly similar to AtSCR and contain C-terminal conserved GRAS family domains. LaSCR1 and LaSCR2 transcript accumulation localized to the endodermis of both normal and cluster roots as shown by in situ hybridization and gene promoter::reporter staining. Transcript analysis as evaluated by quantitative real-time-PCR (qRT-PCR) and RNA gel hybridization indicated that the two LaSCR genes are expressed predominantly in roots. Expression of LaSCR genes was not directly responsive to the P status of the plant but was a function of cluster root development. Suppression of LaSCR1 in transformed roots of lupin and Medicago via RNAi (RNA interference) delivered through Agrobacterium rhizogenes resulted in decreased root numbers, reflecting the potential role of LaSCR1 in maintaining root growth in these species. The results suggest that the functional orthologues of AtSCR have been characterized.

  2. Nitrogen Additions Affect Root Dynamics in a Boreal Forest Ecosystem

    Science.gov (United States)

    Turner, K. M.; Treseder, K. K.

    2004-12-01

    As with many ecosystems, North American boreal forests are increasingly subjected to anthropogenic nitrogen deposition. To examine potential effects on plant growth, we created nitrogen fertilization plots in three sites along an Alaskan fire chronosequence composed of forests aged 5, 17, and 80 years. Each site had been exposed to two years of nitrogen fertilization, with four control plots and four nitrogen plots per site. General observations indicate that aboveground net primary productivity appears to be nitrogen limited in each site. We hypothesized that nitrogen fertilization would positively influence root dynamics as well, with nitrogen additions resulting in an increase in standing root biomass and length. To test our hypothesis, we used a minirhizotron camera to collect sequential images of roots in the top 10 cm of soil in both nitrogen fertilized and control plots in each site. Images were collected monthly during the growing season, with a total of five sampling times between May 2003 and May 2004. We then analyzed the images with WinRhizotron root measurement software. Nitrogen fertilization had varying effects on root biomass among the three sites, with a significant site by N interaction (P = 0.039). A decrease in root biomass was observed in the 5 and 80 year old sites, dropping from 207 g/m2 to 79 g/m2 and from 230 g/m2 to 129 g/m2 for the youngest and oldest sites, respectively. In contrast, root biomass increased from 52 g/m2 to 107 g/m2 in the 17 year old site. (Values are for the top 10 cm of soil only, and likely underestimate total root stocks.) Patterns in standing root lengths diverged from those of root biomass, with a 2.5-fold overall increase under nitrogen fertilization across all sites (P = 0.004). There were no significant differences among sites in nitrogen response. Standing root biomass and length differed from one another in their responses to nitrogen fertilization because nitrogen additions decreased specific root weight (as g

  3. Nutrient Deficiency Affects Root Architecture of Young Seedlings of Malus hupehensis (Pamp) Rehd. Under Conditions of Artificial Medium Cultivation

    Institute of Scientific and Technical Information of China (English)

    FAN Wei-guo; YANG Hong-qiang

    2007-01-01

    What the researchers go in for is to establish models between root architecture (RA) changes and nutrition, mold ideal root architecture of apple trees, improve the nutrient uptake efficiency, and further explore the functional mechanism of nutrient elements during the course of RA construction. The cultivation system of filter paper is utilized to research the effect of nutrient deficiency on the RA of Malus hupehensis (Pamp.) Rehd. There may be eight types of RA. In complete Hogland solution, the main type of RA is "lateral roots clustering in the upper and middle regions of primary root". With the lack of P, K or Ca, the main type of RA is "lateral roots clustering in the upper region primary root", and the "lateral roots clustering in the upper and middle regions of primary root" types of RA decrease. But with shortage of P, the type of lateral roots clustering in the upper and lower regions of primary root increases, and the type of lateral roots clustering in the middle region of primary root decreases, with the types of RA diversified. Under the condition of K deficiency, the type of no lateral root increases and types of lateral roots clustering in the middle region of primary root decrease, and the percentage of such types as "no lateral root", "lateral roots clustering in the upper region of primary root", and "lateral roots clustering in the upper and middle regions of primary root" accounts for 97.9% in all, with the types of RA simplified.With lack of Fe, Mg or Zn, the main type of RA is "lateral roots clustering in the upper and middle regions of primary root",but the type of lateral roots evenly-distributed on primary root increases. The main type of RA is "lateral roots evenlydistributed on primary root", under the condition of N deficiency, and the types of RA turn out to be diversified. There exists a close relation between nutrient deficiency and RA changes. Owing to various forms of nutrient deficiency,correspondingly different types of RA have

  4. Growth, Nitrogen Uptake and Flow in Maize Plants Affected by Root Growth Restriction

    Institute of Scientific and Technical Information of China (English)

    Liang-zheng Xu; Jun-fang Niu; Chun-jian Li; Fu-suo Zhang

    2009-01-01

    The objective of the present study was to investigate the influence of a reduced maize root-system size on root growth and nitrogen (N) uptake and flow within plants. Restriction of shoot-borne root growth caused a strong decrease in the absorption of root: shoot dry weight ratio and a reduction in shoot growth. On the other hand, compensatory growth and an increased N uptake rate in the remaining roots were observed. Despite the limited long-distance transport pathway in the mesocotyl with restriction of shoot-borne root growth, N cycling within these plants was higher than those in control plants, implying that xylem and phloem flow velocities via the mesocotyl were considerably higher than in plants with an intact root system. The removal of the seminal roots in addition to restricting shoot-borne root development did not affect whole plant growth and N uptake, except for the stronger compensatory growth of the primary roots. Our results suggest that an adequate N supply to maize plant is maintained by compensatory growth of the remaining roots, increased N uptake rate and flow velocities within the xylem and phloem via the mesocotyl, and reduction in the shoot growth rate.

  5. Root cooling strongly affects diel leaf growth dynamics, water and carbohydrate relations in Ricinus communis.

    Science.gov (United States)

    Poiré, Richard; Schneider, Heike; Thorpe, Michael R; Kuhn, Arnd J; Schurr, Ulrich; Walter, Achim

    2010-03-01

    In laboratory and greenhouse experiments with potted plants, shoots and roots are exposed to temperature regimes throughout a 24 h (diel) cycle that can differ strongly from the regime under which these plants have evolved. In the field, roots are often exposed to lower temperatures than shoots. When the root-zone temperature in Ricinus communis was decreased below a threshold value, leaf growth occurred preferentially at night and was strongly inhibited during the day. Overall, leaf expansion, shoot biomass growth, root elongation and ramification decreased rapidly, carbon fluxes from shoot to root were diminished and carbohydrate contents of both root and shoot increased. Further, transpiration rate was not affected, yet hydrostatic tensions in shoot xylem increased. When root temperature was increased again, xylem tension reduced, leaf growth recovered rapidly, carbon fluxes from shoot to root increased, and carbohydrate pools were depleted. We hypothesize that the decreased uptake of water in cool roots diminishes the growth potential of the entire plant - especially diurnally, when the growing leaf loses water via transpiration. As a consequence, leaf growth and metabolite concentrations can vary enormously, depending on root-zone temperature and its heterogeneity inside pots. PMID:19968824

  6. Identifying At-Risk Students in General Chemistry via Cluster Analysis of Affective Characteristics

    Science.gov (United States)

    Chan, Julia Y. K.; Bauer, Christopher F.

    2014-01-01

    The purpose of this study is to identify academically at-risk students in first-semester general chemistry using affective characteristics via cluster analysis. Through the clustering of six preselected affective variables, three distinct affective groups were identified: low (at-risk), medium, and high. Students in the low affective group…

  7. Physical mechanisms of plant roots affecting weathering and leaching of loess soil

    Institute of Scientific and Technical Information of China (English)

    LI Yong; ZHANG Qingwen; WAN Guojiang; HUANG Ronggui; PIAO Hechun; BAI Lingyu; LI Lu

    2006-01-01

    Plant roots have potential impacts on soil mineral weathering and leaching. Our objective is to understand the physical mechanisms of plant roots affecting weathering and leaching of loess soil. Root densities were measured through the method of a large-size dug profile, and transport fluxes of soil elements were determined using an undisturbed monolith soil infiltration device on the hilly and gully regions of the Chinese Loess Plateau. The results show that the improvement effects of soil environment by plant roots are mainly controlled by the density and weight of the fibrous roots with the diameters less than 1 mm. Plant roots have the stronger effects on soil physical properties than chemical properties. The principal components analysis (PCA) indicates that soil physical properties by plant roots account for 56.7% of variations in soil environment whereas soil chemical properties and pH contribute about 24.2% of the soil variations. The roles of plant roots in controlling soil weathering and leaching increased in the following order: infiltration enhancement > increase of bioactive substance > stabilization of soil structure. The effects of plant roots on soil mineral weathering and leaching can be quantified using the multiple regression models with the high prediction accuracies developed in this study.

  8. Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis

    Directory of Open Access Journals (Sweden)

    Moreau Hervé

    2008-10-01

    Full Text Available Abstract Background The Wuschel related homeobox (WOX family proteins are key regulators implicated in the determination of cell fate in plants by preventing cell differentiation. A recent WOX phylogeny, based on WOX homeodomains, showed that all of the Physcomitrella patens and Selaginella moellendorffii WOX proteins clustered into a single orthologous group. We hypothesized that members of this group might preferentially share a significant part of their function in phylogenetically distant organisms. Hence, we first validated the limits of the WOX13 orthologous group (WOX13 OG using the occurrence of other clade specific signatures and conserved intron insertion sites. Secondly, a functional analysis using expression data and mutants was undertaken. Results The WOX13 OG contained the most conserved plant WOX proteins including the only WOX detected in the highly proliferating basal unicellular and photosynthetic organism Ostreococcus tauri. A large expansion of the WOX family was observed after the separation of mosses from other land plants and before monocots and dicots have arisen. In Arabidopsis thaliana, AtWOX13 was dynamically expressed during primary and lateral root initiation and development, in gynoecium and during embryo development. AtWOX13 appeared to affect the floral transition. An intriguing clade, represented by the functional AtWOX14 gene inside the WOX13 OG, was only found in the Brassicaceae. Compared to AtWOX13, the gene expression profile of AtWOX14 was restricted to the early stages of lateral root formation and specific to developing anthers. A mutational insertion upstream of the AtWOX14 homeodomain sequence led to abnormal root development, a delay in the floral transition and premature anther differentiation. Conclusion Our data provide evidence in favor of the WOX13 OG as the clade containing the most conserved WOX genes and established a functional link to organ initiation and development in Arabidopsis, most

  9. Fire affects root decomposition, soil food web structure, and carbon flow in tallgrass prairie

    Science.gov (United States)

    Shaw, E. Ashley; Denef, Karolien; Milano de Tomasel, Cecilia; Cotrufo, M. Francesca; Wall, Diana H.

    2016-05-01

    Root litter decomposition is a major component of carbon (C) cycling in grasslands, where it provides energy and nutrients for soil microbes and fauna. This is especially important in grasslands where fire is common and removes aboveground litter accumulation. In this study, we investigated whether fire affects root decomposition and C flow through the belowground food web. In a greenhouse experiment, we applied 13C-enriched big bluestem (Andropogon gerardii) root litter to intact tallgrass prairie soil cores collected from annually burned (AB) and infrequently burned (IB) treatments at the Konza Prairie Long Term Ecological Research (LTER) site. Incorporation of 13C into microbial phospholipid fatty acids and nematode trophic groups was measured on six occasions during a 180-day decomposition study to determine how C was translocated through the soil food web. Results showed significantly different soil communities between treatments and higher microbial abundance for IB. Root decomposition occurred rapidly and was significantly greater for AB. Microbes and their nematode consumers immediately assimilated root litter C in both treatments. Root litter C was preferentially incorporated in a few groups of microbes and nematodes, but depended on burn treatment: fungi, Gram-negative bacteria, Gram-positive bacteria, and fungivore nematodes for AB and only omnivore nematodes for IB. The overall microbial pool of root-litter-derived C significantly increased over time but was not significantly different between burn treatments. The nematode pool of root-litter-derived C also significantly increased over time, and was significantly higher for the AB treatment at 35 and 90 days after litter addition. In conclusion, the C flow from root litter to microbes to nematodes is not only measurable but also significant, indicating that higher nematode trophic levels are critical components of C flow during root decomposition, which, in turn, is significantly affected by fire. Not

  10. Burning management in the tallgrass prairie affects root decomposition, soil food web structure and carbon flow

    Science.gov (United States)

    Shaw, E. A.; Denef, K.; Milano de Tomasel, C.; Cotrufo, M. F.; Wall, D. H.

    2015-09-01

    Root litter decomposition is a major component of carbon (C) cycling in grasslands, where it provides energy and nutrients for soil microbes and fauna. This is especially important in grasslands where fire is a common management practice and removes aboveground litter accumulation. In this study, we investigated whether fire affects root decomposition and C flow through the belowground food web. In a greenhouse experiment, we applied 13C-enriched big bluestem (Andropogon gerardii) root litter to intact tallgrass prairie soil cores collected from annually burned (AB) and infrequently burned (IB) treatments at the Konza Prairie Long Term Ecological Research (LTER) site. Incorporation of 13C into microbial phospholipid fatty acids and nematode trophic groups was measured on six occasions during a 180-day decomposition study to determine how C was translocated through the soil food web. Results showed significantly different soil communities between treatments and higher microbial abundance for IB. Root decomposition occurred rapidly and was significantly greater for AB. Microbes and their nematode consumers immediately assimilated root litter C in both treatments. Root litter C was preferentially incorporated in a few groups of microbes and nematodes, but depended on burn treatment: fungi, Gram-negative bacteria, Gram-positive bacteria, and fungivore nematodes for AB and only omnivore nematodes for IB. The overall microbial pool of root litter-derived C significantly increased over time but was not significantly different between burn treatments. The nematode pool of root litter-derived C also significantly increased over time, and was significantly higher for the AB treatment at 35 and 90 days after litter addition. In conclusion, the C flow from root litter to microbes to nematodes is not only measurable, but significant, indicating that higher nematode trophic levels are critical components of C flow during root decomposition which, in turn, is significantly

  11. Root growth conditions in the topsoil as affected by tillage intensity

    DEFF Research Database (Denmark)

    Kadziene, Grazina; Munkholm, Lars Juhl; Mutegi, James

    2011-01-01

    Many studies have reported impeded root growth in topsoil under reduced tillage or direct drilling, but few have quantified the effects on the least limiting water range for root growth. This study explored the effects of tillage intensity on critical soil physical conditions for root growth...... radish could be a promising tool in the amelioration of soil compaction. Highlights We explored root growth conditions in the topsoil as affected by tillage intensity ► For this purpose we applied the least limiting water range concept. ► We found clear differences in estimated critical aeration limits......–16 cm depths. We estimated the critical aeration limit from either 10% air-filled porosity (εa) or relative gas diffusivity (D/D0) of 0.005 or 0.02 and found a difference between the two methods. The critical limit of soil aeration was best assessed by measuring gas diffusivity directly. Root growth...

  12. Vitamin D3 affects growth and Ca2+ uptake by Phaseolus vulgaris roots cultured in vitro

    International Nuclear Information System (INIS)

    Vitamin D3 at low concentration (10−9 M) inhibited the growth of Phaseolus vulgaris L. (cv. Contrancha) roots in vitro as measured by elongation (14 h) and [3H]-leucine incorporation into protein (2 h), and increased their labelling with 45Ca2+ (2 h). Cycloheximide and puromycin (50 u.M) blocked vitamin D3 stimulation of root 45Ca2+ labelling, indicating that it is mediated by de novo protein synthesis. The calcium ionophore X-537A (10−5JW) induced similar changes both in root elongation and 45Ca2+ uptake (14 h). This may indicate that the inhibitory effects of the sterol on root growth are mediated by changes in Ca2+ fluxes. However, this interpretation should be further strengthened by additional studies as the ionophore may have acted on root growth, affecting physiological processes other than Ca2+ transport. (author)

  13. Water extraction variability in the banana root zone affects the reliability of water balance

    Directory of Open Access Journals (Sweden)

    Alisson Jadavi Pereira da Silva

    2015-02-01

    Full Text Available Spatial and temporal variability of soil water extraction from the root zone affect soil water balance determination. The number of sensors installed in the root zone in studies addressing water balance is still set arbitrarily. This study provided an investigation of the water extraction process by banana (Musa spp. roots by (i determining the variability of water extraction from the banana tree root zone, (ii detecting differences in the estimation of evapotranspiration (ET by the soil water balance method when the number of soil profiles monitored in the roots zone varies, (iii and; determining the minimum number of Time Domain Reflectometry (TDR probes needed to obtain ET precision and accuracy similar to that determined by a drainage lysimeter. The field experiment was conducted in Cruz das Almas, in the state of Bahia, Brazil, where a drainage lysimeter was installed on a banana plantation. The water extraction in the banana root zone was quantified by the water content variations monitored in 72 points by TDRs, with measurements at 15-min intervals. The variability of water extraction in the banana root zone was medium to high. The range of variability affects the reliability of the crop evapotranspiration calculation by the soil water balance method. To prevent an overestimation of banana evapotranspiration, the water extraction in the soil profile must be monitored with at least 16 TDR probes installed at a minimum distance of 0.9 m and a minimum depth of 0.7 m.

  14. Spatial heterogeneity of plant-soil feedback affects root interactions and interspecific competition.

    Science.gov (United States)

    Hendriks, Marloes; Ravenek, Janneke M; Smit-Tiekstra, Annemiek E; van der Paauw, Jan Willem; de Caluwe, Hannie; van der Putten, Wim H; de Kroon, Hans; Mommer, Liesje

    2015-08-01

    Plant-soil feedback is receiving increasing interest as a factor influencing plant competition and species coexistence in grasslands. However, we do not know how spatial distribution of plant-soil feedback affects plant below-ground interactions. We investigated the way in which spatial heterogeneity of soil biota affects competitive interactions in grassland plant species. We performed a pairwise competition experiment combined with heterogeneous distribution of soil biota using four grassland plant species and their soil biota. Patches were applied as quadrants of 'own' and 'foreign' soils from all plant species in all pairwise combinations. To evaluate interspecific root responses, species-specific root biomass was quantified using real-time PCR. All plant species suffered negative soil feedback, but strength was species-specific, reflected by a decrease in root growth in own compared with foreign soil. Reduction in root growth in own patches by the superior plant competitor provided opportunities for inferior competitors to increase root biomass in these patches. These patterns did not cascade into above-ground effects during our experiment. We show that root distributions can be determined by spatial heterogeneity of soil biota, affecting plant below-ground competitive interactions. Thus, spatial heterogeneity of soil biota may contribute to plant species coexistence in species-rich grasslands.

  15. Factors affecting irrigant extrusion during root canal irrigation: a systematic review

    NARCIS (Netherlands)

    Boutsioukis, C.; Psimma, Z.; Sluis, van der L.W.M.

    2013-01-01

    The aim of the present study was to conduct a systematic review and critical analysis of published data on irrigant extrusion to identify factors causing, affecting or predisposing to irrigant extrusion during root canal irrigation of human mature permanent teeth. An electronic search was conducted

  16. NaCl salinity affects lateral root development in Plantago maritima

    NARCIS (Netherlands)

    Rubinigg, M; Wenisch, J; Elzenga, JTM; Stulen, [No Value

    2004-01-01

    Root growth and morphology were assessed weekly in hydroponically-grown seedlings of the halophyte Plantago maritima L. during exposure to 0, 50, 100 and 200 mM NaCl for 21 d. Relative growth rate was reduced by 25% at 200 mM NaCl. The lower NaCl treatments did not affect relative growth rates. Prim

  17. Carbon use in root respiration as affected by elevated atmospheric O-2

    NARCIS (Netherlands)

    Lambers, H; Stulen, [No Value; vanderWerf, A

    1996-01-01

    The use of fossil fuel is predicted to cause an increase of the atmospheric CO2 concentration, which will affect the global pattern of temperature and precipitation. It is therefore essential to incorporate effects of temperature and water supply on the carbon requirement for root respiration of pla

  18. Glycerol affects root development through regulation of multiple pathways in Arabidopsis.

    Directory of Open Access Journals (Sweden)

    Jun Hu

    demonstrated that glycerol treatment altered endogenous levels of G3P, phosphate and ROS, affected auxin distribution and cell division in the root meristem, and eventually resulted in modifications of root development.

  19. Glycerol affects root development through regulation of multiple pathways in Arabidopsis.

    Science.gov (United States)

    Hu, Jun; Zhang, Yonghong; Wang, Jinfang; Zhou, Yongming

    2014-01-01

    treatment altered endogenous levels of G3P, phosphate and ROS, affected auxin distribution and cell division in the root meristem, and eventually resulted in modifications of root development. PMID:24465999

  20. Gel-free proteomic analysis of soybean root proteins affected by calcium under flooding stress

    Directory of Open Access Journals (Sweden)

    MyeongWon eOh

    2014-10-01

    Full Text Available Soybean is sensitive to flooding stress and exhibits reduced growth under flooding conditions. To better understand the flooding-responsive mechanisms of soybean, the effect of exogenous calcium on flooding-stressed soybeans was analyzed using proteomic technique. An increase in exogenous calcium levels enhanced soybean root elongation and suppressed the cell death of root tip under flooding stress. Proteins were extracted from the roots of 4-day-old soybean seedlings exposed to flooding stress without or with calcium for 2 days and analyzed using gel-free proteomic technique. Proteins involved in protein degradation/synthesis/posttranslational modification, hormone/cell wall metabolisms, and DNA synthesis were decreased by flooding stress; however, their reductions were recovered by calcium treatment. Development, lipid metabolism, and signaling-related proteins were increased in soybean roots when calcium was supplied under flooding stress. Fermentation and glycolysis-related proteins were increased in response to flooding; however, these proteins were not affected by calcium supplementation. Furthermore, urease and copper chaperone proteins exhibited similar profiles in 4-day-old untreated soybeans and 4-day-old soybeans exposed to flooding for 2 days in the presence of calcium. These results suggest that calcium might affect the cell wall/hormone metabolisms, protein degradation/synthesis, and DNA synthesis in soybean roots under flooding stress.

  1. The root herbivore history of the soil affects the productivity of a grassland plant community and determines plant response to new root herbivore attack.

    Directory of Open Access Journals (Sweden)

    Ilja Sonnemann

    Full Text Available Insect root herbivores can alter plant community structure by affecting the competitive ability of single plants. However, their effects can be modified by the soil environment. Root herbivory itself may induce changes in the soil biota community, and it has recently been shown that these changes can affect plant growth in a subsequent season or plant generation. However, so far it is not known whether these root herbivore history effects (i are detectable at the plant community level and/or (ii also determine plant species and plant community responses to new root herbivore attack. The present greenhouse study determined root herbivore history effects of click beetle larvae (Elateridae, Coleoptera, genus Agriotes in a model grassland plant community consisting of six common species (Achillea millefolium, Plantago lanceolata, Taraxacum officinale, Holcus lanatus, Poa pratensis, Trifolium repens. Root herbivore history effects were generated in a first phase of the experiment by growing the plant community in soil with or without Agriotes larvae, and investigated in a second phase by growing it again in the soils that were either Agriotes trained or not. The root herbivore history of the soil affected plant community productivity (but not composition, with communities growing in root herbivore trained soil producing more biomass than those growing in untrained soil. Additionally, it influenced the response of certain plant species to new root herbivore attack. Effects may partly be explained by herbivore-induced shifts in the community of arbuscular mycorrhizal fungi. The root herbivore history of the soil proved to be a stronger driver of plant growth on the community level than an actual root herbivore attack which did not affect plant community parameters. History effects have to be taken into account when predicting the impact of root herbivores on grasslands.

  2. Test speed and other factors affecting the measurements of tree root properties used in soil reinforcement models

    NARCIS (Netherlands)

    Cofie, P.; Koolen, A.J.

    2001-01-01

    Measured values of the mechanical properties of tree roots are found to be affected by a number of factors. Shear properties of tree roots are found to be partly influenced by size of the testing equipment, level of soil compaction, deformation of the root material and estimated width of the shear z

  3. The presence of root-feeding nematodes - Not AMF - Affects an herbivore dispersal strategy

    Science.gov (United States)

    De Roissart, Annelies; Peña, Eduardo de la; Van Oyen, Lien; Van Leeuwen, Thomas; Ballhorn, Daniel J.; Bonte, Dries

    2013-10-01

    Plant quality and aboveground herbivore performance are influenced either directly or indirectly by the soil community. As herbivore dispersal is a conditional strategy relative to plant quality, we examined whether belowground biotic interactions (the presence of root-feeding nematodes or arbuscular mycorrhizal fungi) affect aerial dispersal of a phytophagous mite (Tetranychus urticae) through changes in performance of their host plant (Phaseolus vulgaris). Aerial dispersal strategies of mites were analyzed in wind-tunnel experiments, in which a unique mite pre-dispersal behavior (rearing) was assessed in relation to the presence of belowground biota on the host plant on which mites developed. Spider mite pre-dispersal behavior significantly increased with the experienced mite density on the host during development. Additionally, plants infected with root-feeding nematodes induced an increase of spider mite aerial dispersal behavior. The results highlight that belowground herbivores can affect population dynamics of aboveground herbivores by altering dispersal strategies.

  4. Sowing Density: A Neglected Factor Fundamentally Affecting Root Distribution and Biomass Allocation of Field Grown Spring Barley (Hordeum Vulgare L.).

    Science.gov (United States)

    Hecht, Vera L; Temperton, Vicky M; Nagel, Kerstin A; Rascher, Uwe; Postma, Johannes A

    2016-01-01

    Studies on the function of root traits and the genetic variation in these traits are often conducted under controlled conditions using individual potted plants. Little is known about root growth under field conditions and how root traits are affected by agronomic practices in particular sowing density. We hypothesized that with increasing sowing density, root length density (root length per soil volume, cm cm(-3)) increases in the topsoil as well as specific root length (root length per root dry weight, cm g(-1)) due to greater investment in fine roots. Therefore, we studied two spring barley cultivars at ten different sowing densities (24-340 seeds m(-2)) in 2 consecutive years in a clay loam field in Germany and established sowing density dose-response curves for several root and shoot traits. We took soil cores for measuring roots up to a depth of 60 cm in and between plant rows (inter-row distance 21 cm). Root length density increased with increasing sowing density and was greatest in the plant row in the topsoil (0-10 cm). Greater sowing density increased specific root length partly through greater production of fine roots in the topsoil. Rooting depth (D50) of the major root axes (root diameter class 0.4-1.0 mm) was not affected. Root mass fraction decreased, while stem mass fraction increased with sowing density and over time. Leaf mass fraction was constant over sowing density but greater leaf area was realized through increased specific leaf area. Considering fertilization, we assume that light competition caused plants to grow more shoot mass at the cost of investment into roots, which is partly compensated by increased specific root length and shallow rooting. Increased biomass per area with greater densities suggest that density increases the efficiency of the cropping system, however, declines in harvest index at densities over 230 plants m(-2) suggest that this efficiency did not translate into greater yield. We conclude that plant density is a

  5. Sowing Density: A Neglected Factor Fundamentally Affecting Root Distribution and Biomass Allocation of Field Grown Spring Barley (Hordeum Vulgare L.).

    Science.gov (United States)

    Hecht, Vera L; Temperton, Vicky M; Nagel, Kerstin A; Rascher, Uwe; Postma, Johannes A

    2016-01-01

    Studies on the function of root traits and the genetic variation in these traits are often conducted under controlled conditions using individual potted plants. Little is known about root growth under field conditions and how root traits are affected by agronomic practices in particular sowing density. We hypothesized that with increasing sowing density, root length density (root length per soil volume, cm cm(-3)) increases in the topsoil as well as specific root length (root length per root dry weight, cm g(-1)) due to greater investment in fine roots. Therefore, we studied two spring barley cultivars at ten different sowing densities (24-340 seeds m(-2)) in 2 consecutive years in a clay loam field in Germany and established sowing density dose-response curves for several root and shoot traits. We took soil cores for measuring roots up to a depth of 60 cm in and between plant rows (inter-row distance 21 cm). Root length density increased with increasing sowing density and was greatest in the plant row in the topsoil (0-10 cm). Greater sowing density increased specific root length partly through greater production of fine roots in the topsoil. Rooting depth (D50) of the major root axes (root diameter class 0.4-1.0 mm) was not affected. Root mass fraction decreased, while stem mass fraction increased with sowing density and over time. Leaf mass fraction was constant over sowing density but greater leaf area was realized through increased specific leaf area. Considering fertilization, we assume that light competition caused plants to grow more shoot mass at the cost of investment into roots, which is partly compensated by increased specific root length and shallow rooting. Increased biomass per area with greater densities suggest that density increases the efficiency of the cropping system, however, declines in harvest index at densities over 230 plants m(-2) suggest that this efficiency did not translate into greater yield. We conclude that plant density is a

  6. Gibberellins inhibit adventitious rooting in hybrid aspen and Arabidopsis by affecting auxin transport.

    Science.gov (United States)

    Mauriat, Mélanie; Petterle, Anna; Bellini, Catherine; Moritz, Thomas

    2014-05-01

    Knowledge of processes involved in adventitious rooting is important to improve both fundamental understanding of plant physiology and the propagation of numerous plants. Hybrid aspen (Populus tremula × tremuloïdes) plants overexpressing a key gibberellin (GA) biosynthesis gene (AtGA20ox1) grow rapidly but have poor rooting efficiency, which restricts their clonal propagation. Therefore, we investigated the molecular basis of adventitious rooting in Populus and the model plant Arabidopsis. The production of adventitious roots (ARs) in tree cuttings is initiated from the basal stem region, and involves the interplay of several endogenous and exogenous factors. The roles of several hormones in this process have been characterized, but the effects of GAs have not been fully investigated. Here, we show that a GA treatment negatively affects the numbers of ARs produced by wild-type hybrid aspen cuttings. Furthermore, both hybrid aspen plants and intact Arabidopsis seedlings overexpressing AtGA20ox1, PttGID1.1 or PttGID1.3 genes (with a 35S promoter) produce few ARs, although ARs develop from the basal stem region of hybrid aspen and the hypocotyl of Arabidopsis. In Arabidopsis, auxin and strigolactones are known to affect AR formation. Our data show that the inhibitory effect of GA treatment on adventitious rooting is not mediated by perturbation of the auxin signalling pathway, or of the strigolactone biosynthetic and signalling pathways. Instead, GAs appear to act by perturbing polar auxin transport, in particular auxin efflux in hybrid aspen, and both efflux and influx in Arabidopsis.

  7. Sowing Density: A Neglected Factor Fundamentally Affecting Root Distribution and Biomass Allocation of Field Grown Spring Barley (Hordeum Vulgare L.

    Directory of Open Access Journals (Sweden)

    Vera L Hecht

    2016-06-01

    Full Text Available Studies after the function of root traits and the genetic variation in these traits are often conducted under controlled conditions using individual potted plants. Little is known about root growth under field conditions and how root traits are affected by agronomic practices in particular sowing density. We hypothesized that with increasing sowing density, root length density (root length per soil volume, cm cm-3 increases in the top soil as well as specific root length (root length per root dry weight, cm g-1 due to greater investment in fine roots. Therefore, we studied two spring barley cultivars at ten different sowing densities (24-340 seeds m-2 in two consecutive years in a clay loam field in Germany and established sowing density dose response curves for several root and shoot traits. We took soil cores for measuring roots up to a depth of 60 cm in and between plant rows (inter-row distance 21 cm. Root length density increased with increasing sowing density and was greatest in the plant row in the top soil (0-10 cm. Greater sowing density increased specific root length partly through greater production of fine roots in the top soil. Rooting depth of the major root axes (root diameter class 0.4-1.0 mm was not affected. Root mass fraction decreased, while stem mass fraction increased with sowing density and over time. Leaf mass fraction was constant over sowing density but greater leaf area was realized through increased specific leaf area. Considering fertilization, we assume that light competition caused plants to grow more shoot mass at the cost of investment into roots, which is partly compensated by increased SRL and increased shallow rooting. Increased biomass per area with greater densities suggest that density increases the efficiency of the cropping system, however, declines in harvest index at densities over 230 plants m-2 suggest that this efficiency did not translate into greater yield. We conclude that plant density is a

  8. Towards Tunable Consensus Clustering for Studying Functional Brain Connectivity During Affective Processing

    DEFF Research Database (Denmark)

    Liu, Chao; Abu-Jamous, Basel; Brattico, Elvira;

    2016-01-01

    in neuroimaging by means of first applying several analysis methods (three in this study) on multiple datasets and then integrating the clustering results. To validate the method, we applied it to a complex fMRI experiment involving affective processing of hundreds of music clips. We found that brain structures...... over traditional single clustering algorithms in being able to evidence robust connectivity patterns even with complex neuroimaging data involving a variety of stimuli and affective evaluations of them. The consensus clustering method is implemented in the R package "UNCLES" available on http://cran.r-project.org/web/packages/UNCLES/index.html....

  9. Increasing shrub abundance and N addition in Arctic tundra affect leaf and root litter decomposition differently

    Science.gov (United States)

    McLaren, J.; van de Weg, M. J.; Shaver, G. R.; Gough, L.

    2013-12-01

    Changes in global climate have resulted in a ';greening' of the Arctic as the abundance of deciduous shrub species increases. Consequently, not only the living plant community, but also the litter composition changes, which in turn can affect carbon turnover patterns in the Arctic. We examined effects of changing litter composition (both root and leaf litter) on decomposition rates with a litter bag study, and specifically focused on the impact of deciduous shrub Betula nana litter on litter decomposition from two evergreen shrubs (Ledum palustre, and Vaccinium vitis-idaea) and one graminoid (Eriophorum vaginatum) species. Additionally, we investigated how decomposition was affected by nutrient availability by placing the litterbags in an ambient and a fertilized moist acidic tundra environment. Measurements were carried out seasonally over 2 years (after snow melt, mid-growing season, end growing season). We measured litter mass loss over time, as well as the respiration rates (standardized for temperature and moisture) and temperature sensitivity of litter respiration at the time of harvesting the litter bags. For leaves, Betula litter decomposed faster than the other three species, with Eriophorum leaves decomposing the slowest. This pattern was observed for both mass loss and litter respiration rates, although the differences in respiration became smaller over time. Surprisingly, combining Betula with any other species resulted in slower overall weight loss rates than would be predicted based on monoculture weight loss rates. This contrasted with litter respiration at the time of sampling, which showed a positive mixing effect of adding Betula leaf liter to the other species. Apparently, during the first winter months (September - May) Betula litter decomposition is negatively affected by mixing the species and this legacy can still be observed in the total mass loss results later in the year. For root litter there were fewer effects of species identity on root

  10. A Gain-of-Function Mutation in OsIAA11 Affects Lateral Root Development in Rice

    Institute of Scientific and Technical Information of China (English)

    Zhen-Xing Zhu; Yu Liu; Shao-Jun Liu; Chuan-Zao Mao; Yun-Rong Wu; Ping Wu

    2012-01-01

    Lateral roots are important to plants for the uptake of nutrients and water.Several members of the Aux/IAA family have been shown to play crucial roles in lateral root development.Here,a member of the rice Aux/IAA family genes,OsIAA11 (LOC_Os03g43400),was isolated from a rice mutant defective in lateral root development.The gain-of-function mutation in OsIAA 11 strictly blocks the initiation of lateral root primordia,but it does not affect crown root development.The expression of OsIAA11 is defined in root tips,lateral root caps,steles,and lateral root primordia.The auxin reporter DR5-GUS (β-glucuronidase) was expressed at lower levels in the mutant than in wild-type,indicating that OsIAA11 is involved in auxin signaling in root caps.The transcript abundance of both OsPIN1b and OsPIN10a was diminished in root tips of the Osiaa11 mutant.Taken together,the results indicate that the gain-of-function mutation in OsIAA11 caused the inhibition of lateral root development in rice.

  11. Osmotic stress at the barley root affects expression of circadian clock genes in the shoot.

    Science.gov (United States)

    Habte, Ermias; Müller, Lukas M; Shtaya, Munqez; Davis, Seth J; von Korff, Maria

    2014-06-01

    The circadian clock is an important timing system that controls physiological responses to abiotic stresses in plants. However, there is little information on the effects of the clock on stress adaptation in important crops, like barley. In addition, we do not know how osmotic stress perceived at the roots affect the shoot circadian clock. Barley genotypes, carrying natural variation at the photoperiod response and clock genes Ppd-H1 and HvELF3, were grown under control and osmotic stress conditions to record changes in the diurnal expression of clock and stress-response genes and in physiological traits. Variation at HvELF3 affected the expression phase and shape of clock and stress-response genes, while variation at Ppd-H1 only affected the expression levels of stress genes. Osmotic stress up-regulated expression of clock and stress-response genes and advanced their expression peaks. Clock genes controlled the expression of stress-response genes, but had minor effects on gas exchange and leaf transpiration. This study demonstrated that osmotic stress at the barley root altered clock gene expression in the shoot and acted as a spatial input signal into the clock. Unlike in Arabidopsis, barley primary assimilation was less controlled by the clock and more responsive to environmental perturbations, such as osmotic stress. PMID:24895755

  12. Clustering of affective categories in Scandinavian and Romance languages

    DEFF Research Database (Denmark)

    Sauciuc, Gabriela-Alina

    obtained with the help of a supplemented version of the traditional free-listing task (a ranking and a definitional-inferential task being added) will be considered here. 10 different sets combining quantitative and qualitative data have been collected, corresponding to the various relevant superordinate...... communication), this study focuses on levels and patterns of categorization in the domain of affectivity. Cross-cultural comparable data collected in several Romance (Spanish, Italian, Romanian) and Scandinavian (Danish, Swedish, Norwegian) languages with the help of a series of experiments inspired by Fehr...... and Rusell's prototype approach to emotions are analyzed from a perspective that goes beyond the interpretation of prototype theory and aligns with the theory-based approaches to categorization (cfr. the seminal paper by Murphy and Medin, 1985). Due to space limitations, only a short overview of the data...

  13. Familial clustering of executive functioning in affected sibling pair families with ADHD.

    NARCIS (Netherlands)

    Slaats-Willemse, D.I.; Swaab-Barneveld, H.J.; Sonneville, L.

    2005-01-01

    OBJECTIVE: To investigate familial clustering of executive functioning (i.e., response inhibition, fine visuomotor functioning, and attentional control) in attention-deficit/hyperactivity disorder (ADHD)-affected sibling pairs. METHOD: Fifty-two affected sibling pairs aged 6 to 18 years and diagnose

  14. Elevated atmospheric CO2 levels affect community structure of rice root-associated bacteria

    OpenAIRE

    Okubo, Takashi; Liu, Dongyan; Tsurumaru, Hirohito; Ikeda, Seishi; Asakawa, Susumu; Tokida, Takeshi; Tago, Kanako; Hayatsu, Masahito; Aoki, Naohiro; Ishimaru, Ken; Ujiie, Kazuhiro; Usui, Yasuhiro; Nakamura, Hirofumi; Sakai, Hidemitsu; Hayashi, Kentaro

    2015-01-01

    A number of studies have shown that elevated atmospheric CO2 ([CO2]) affects rice yields and grain quality. However, the responses of root-associated bacteria to [CO2] elevation have not been characterized in a large-scale field study. We conducted a free-air CO2 enrichment (FACE) experiment (ambient + 200 μmol.mol−1) using three rice cultivars (Akita 63, Takanari, and Koshihikari) and two experimental lines of Koshihikari [chromosome segment substitution and near-isogenic lines (NILs)] to de...

  15. Elevated atmospheric CO2 levels affect community structure of rice root-associated bacteria

    OpenAIRE

    Kiwamu eMinamisawa; Takashi eOkubo; Dongyan eLiu; Hirohito eTsurumaru; Seishi eIkeda; Susumu eAsakawa; Takeshi eTokida; Kanako eTago; Masahito eHayatsu; Naohiro eAoki; Ken eIshimaru; Kazuhiro eUjiie; Yasuhiro eUsui; Hirofumi eNakamura; Hidemitsu eSakai

    2015-01-01

    A number of studies have shown that elevated atmospheric CO2 ([CO2]) affects rice yields and grain quality. However, the responses of root-associated bacteria to [CO2] elevation have not been characterized in a large-scale field study. We conducted a free-air CO2 enrichment (FACE) experiment (ambient + 200 μmol⋅mol−1) using three rice cultivars (Akita 63, Takanari, and Koshihikari) and two experimental lines of Koshihikari (chromosome segment substitution and near-isogenic lines) to determine...

  16. Factors affecting irrigant extrusion during root canal irrigation: a systematic review.

    Science.gov (United States)

    Boutsioukis, C; Psimma, Z; van der Sluis, L W M

    2013-07-01

    The aim of the present study was to conduct a systematic review and critical analysis of published data on irrigant extrusion to identify factors causing, affecting or predisposing to irrigant extrusion during root canal irrigation of human mature permanent teeth. An electronic search was conducted in Cochrane Library, LILACS, PubMed, SciELO, Scopus and Web of Knowledge using a combination of the terms 'irrigant', 'rinse', 'extrusion', 'injection', 'complication', 'accident', 'iatrogenic', 'root canal', 'tooth' and 'endodontic'. Additional studies were identified by hand-searching of six endodontic journals and the relevant chapters of four endodontic textbooks, resulting in a total of 460 titles. No language restriction was imposed. After applying screening and strict eligibility criteria by two independent reviewers, 40 case reports and 10 ex vivo studies were included in the review. A lack of clinical studies focusing on irrigant extrusion during root canal irrigation was evident. The reviewed case reports focused mainly on the clinical manifestations and management of the accidents and did not provide adequate details on the possible factors that may influence irrigant extrusion. The data from the included ex vivo studies were inconclusive due to major methodological limitations, such as not simulating the presence of periapical tissues and not assessing the validity of irrigant detection methods. The extensive variability in the protocols employed hindered quantitative synthesis. The choice of factors investigated in ex vivo studies seems not to have been driven by the available clinical evidence. These issues need to be addressed in future studies. PMID:23289914

  17. Analyzing the factors affecting network lifetime cluster-based wireless sensor network

    International Nuclear Information System (INIS)

    Cluster-based wireless sensor networks enable the efficient utilization of the limited energy resources of the deployed sensor nodes and hence prolong the node as well as network lifetime. Low Energy Adaptive Clustering Hierarchy (Leach) is one of the most promising clustering protocol proposed for wireless sensor networks. This paper provides the energy utilization and lifetime analysis for cluster-based wireless sensor networks based upon LEACH protocol. Simulation results identify some important factors that induce unbalanced energy utilization between the sensor nodes and hence affect the network lifetime in these types of networks. These results highlight the need for a standardized, adaptive and distributed clustering technique that can increase the network lifetime by further balancing the energy utilization among sensor nodes. (author)

  18. Plasma membrane H+-ATPase-dependent citrate exudation from cluster roots of phosphate-deficient white lupin

    DEFF Research Database (Denmark)

    Tomasi, Nicola; Kretzschmar, Tobias; Espen, Luca;

    2009-01-01

    the rhizosphere.The relationship between acidification and carboxylate exudation is still largely unknown. In the present work,we studied the linkage between organic acids (malate and citrate) and proton exudations in cluster roots of P-deficient white lupin. After the illumination started, citrate exudation......,an activator of the plasmamembrane (PM)H+-ATPase, stimulated citrate exudation, whereas vanadate, an inhibitor of the H+-ATPase, reduced citrate exudation. The burst of citrate exudation was associated with an increase in expression of theLHA1PMH+-ATPase gene,an increased amount of H+-ATPase protein, a shift...... in pH optimum of the enzymeand post-translational modification of an H ++-ATPase protein involving binding of activating 14-3-3 protein.Taken together, our results indicate a close link in cluster roots of P-deficient white lupin between the burst of citrate exudation and PM H+-ATPase-catalysed proton...

  19. Nitrate reductase-mediated NO production enhances Cd accumulation in Panax notoginseng roots by affecting root cell wall properties.

    Science.gov (United States)

    Kan, Qi; Wu, Wenwei; Yu, Wenqian; Zhang, Jiarong; Xu, Jin; Rengel, Zed; Chen, Limei; Cui, Xiuming; Chen, Qi

    2016-04-01

    Panax notoginseng (Burk) F. H. Chen is a traditional medicinal herb in China. However, the high capacity of its roots to accumulate cadmium (Cd) poses a potential risk to human health. Although there is some evidence for the involvement of nitric oxide (NO) in mediating Cd toxicity, the origin of Cd-induced NO and its function in plant responses to Cd remain unknown. In this study, we examined NO synthesis and its role in Cd accumulation in P. notoginseng roots. Cd-induced NO production was significantly decreased by application of the nitrate reductase inhibitor tungstate but not the nitric oxide synthase inhibitor L-NAME (N(G)-methyl-l-arginine acetate), indicating that nitrate reductase is the major contributor to Cd-induced NO production in P. notoginseng roots. Under conditions of Cd stress, sodium nitroprusside (SNP, an NO donor) increased Cd accumulation in root cell walls but decreased Cd translocation to the shoot. In contrast, the NO scavenger cPTIO (2-(4-carboxyphenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide) and tungstate both significantly decreased NO-increased Cd retention in root cell walls. The amounts of hemicellulose 1 and pectin, together with pectin methylesterase activity, were increased with the addition of SNP but were decreased by cPTIO and tungstate. Furthermore, increases or decreases in hemicellulose 1 and pectin contents as well as pectin methylesterase activity fit well with the increased or decreased retention of Cd in the cell walls of P. notoginseng roots. The results suggest that nitrate reductase-mediated NO production enhances Cd retention in P. notoginseng roots by modulating the properties of the cell wall.

  20. Modulation of Root Signals in Relation to Stomatal Sensitivity to Root-sourced Abscisic Acid in Drought-affected Plants

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Stomatal sensitivity to root signals induced by soil drying may vary between environments and plant species. This is likely central role in root to shoot signaling. pH and hydraulic signals may interact with ABA signals and thus, jointly regulate stomatal responses to changed soil water status. pH itself can be modified by several factors, among which the chemical compositions In the xylem stream and the live cells surrounding the vessels play crucial roles. In addition to the xylem pH,more attention should be paid to the direct modulation of leaf apoplastic pH, because many chemical compositions might strongly modify the leaf apoplastlc pH while having no significant effect on the xylem pH. The direct modulation of the ABA signal intensity may be more important for the regulation of stomatal responses to soil drying than the ABA signal per se.The ABA signal is also regulated by the ABA catabolism and the supply of precursors to the roots If a sustained root to shoot communication of soil drying operates at the whole plant level. More importantly, ABA catabolism could play crucial roles In the determination of the fate of the ABA signal and thereby control the stomatal behavior of the root-sourced ABA signal.

  1. Nano titania aided clustering and adhesion of beneficial bacteria to plant roots to enhance crop growth and stress management.

    Science.gov (United States)

    Palmqvist, N G M; Bejai, S; Meijer, J; Seisenbaeva, G A; Kessler, V G

    2015-01-01

    A novel use of Titania nanoparticles as agents in the nano interface interaction between a beneficial plant growth promoting bacterium (Bacillus amyloliquefaciens UCMB5113) and oilseed rape plants (Brassica napus) for protection against the fungal pathogen Alternaria brassicae is presented. Two different TiO2 nanoparticle material were produced by the Sol-Gel approach, one using the patented Captigel method and the other one applying TiBALDH precursor. The particles were characterized by transmission electron microscopy, thermogravimetric analysis, X-ray diffraction, dynamic light scattering and nano particle tracking analysis. Scanning electron microscopy showed that the bacterium was living in clusters on the roots and the combined energy-dispersive X-ray spectroscopy analysis revealed that titanium was present in these cluster formations. Confocal laser scanning microscopy further demonstrated an increased bacterial colonization of Arabidopsis thaliana roots and a semi-quantitative microscopic assay confirmed an increased bacterial adhesion to the roots. An increased amount of adhered bacteria was further confirmed by quantitative fluorescence measurements. The degree of infection by the fungus was measured and quantified by real-time-qPCR. Results showed that Titania nanoparticles increased adhesion of beneficial bacteria on to the roots of oilseed rape and protected the plants against infection.

  2. Nano titania aided clustering and adhesion of beneficial bacteria to plant roots to enhance crop growth and stress management

    Science.gov (United States)

    Palmqvist, N. G. M.; Bejai, S.; Meijer, J.; Seisenbaeva, G. A.; Kessler, V. G.

    2015-05-01

    A novel use of Titania nanoparticles as agents in the nano interface interaction between a beneficial plant growth promoting bacterium (Bacillus amyloliquefaciens UCMB5113) and oilseed rape plants (Brassica napus) for protection against the fungal pathogen Alternaria brassicae is presented. Two different TiO2 nanoparticle material were produced by the Sol-Gel approach, one using the patented Captigel method and the other one applying TiBALDH precursor. The particles were characterized by transmission electron microscopy, thermogravimetric analysis, X-ray diffraction, dynamic light scattering and nano particle tracking analysis. Scanning electron microscopy showed that the bacterium was living in clusters on the roots and the combined energy-dispersive X-ray spectroscopy analysis revealed that titanium was present in these cluster formations. Confocal laser scanning microscopy further demonstrated an increased bacterial colonization of Arabidopsis thaliana roots and a semi-quantitative microscopic assay confirmed an increased bacterial adhesion to the roots. An increased amount of adhered bacteria was further confirmed by quantitative fluorescence measurements. The degree of infection by the fungus was measured and quantified by real-time-qPCR. Results showed that Titania nanoparticles increased adhesion of beneficial bacteria on to the roots of oilseed rape and protected the plants against infection.

  3. Phytotoxic cyanamide affects maize (Zea mays) root growth and root tip function: from structure to gene expression.

    Science.gov (United States)

    Soltys, Dorota; Rudzińska-Langwald, Anna; Kurek, Wojciech; Szajko, Katarzyna; Sliwinska, Elwira; Bogatek, Renata; Gniazdowska, Agnieszka

    2014-05-01

    Cyanamide (CA) is a phytotoxic compound produced by four Fabaceae species: hairy vetch, bird vetch, purple vetch and black locust. Its toxicity is due to complex activity that involves the modification of both cellular structures and physiological processes. To date, CA has been investigated mainly in dicot plants. The goal of this study was to investigate the effects of CA in the restriction of the root growth of maize (Zea mays), representing the monocot species. CA (3mM) reduced the number of border cells in the root tips of maize seedlings and degraded their protoplasts. However, CA did not induce any significant changes in the organelle structure of other root cells, apart from increased vacuolization. CA toxicity was also demonstrated by its effect on cell cycle activity, endoreduplication intensity, and modifications of cyclins CycA2, CycD2, and histone HisH3 gene expression. In contrast, the arrangement of microtubules was not altered by CA. Treatment of maize seedlings with CA did not completely arrest mitotic activity, although the frequency of dividing cells was reduced. Furthermore, prolonged CA treatment increased the proportion of endopolyploid cells in the root tip. Cytological malformations were accompanied by an induction of oxidative stress in root cells, which manifested as enhanced accumulation of H2O2. Exposure of maize seedlings to CA resulted in an increased concentration of auxin and stimulated ethylene emission. Taken together, these findings suggested that the inhibition of root growth by CA may be a consequence of stress-induced morphogenic responses.

  4. Receptor clustering affects signal transduction at the membrane level in the reaction-limited regime

    Science.gov (United States)

    Caré, Bertrand R.; Soula, Hédi A.

    2013-01-01

    Many types of membrane receptors are found to be organized as clusters on the cell surface. We investigate the potential effect of such receptor clustering on the intracellular signal transduction stage. We consider a canonical pathway with a membrane receptor (R) activating a membrane-bound intracellular relay protein (G). We use Monte Carlo simulations to recreate biochemical reactions using different receptor spatial distributions and explore the dynamics of the signal transduction. Results show that activation of G by R is severely impaired by R clustering, leading to an apparent blunted biological effect compared to control. Paradoxically, this clustering decreases the half maximal effective dose (ED50) of the transduction stage, increasing the apparent affinity. We study an example of inter-receptor interaction in order to account for possible compensatory effects of clustering and observe the parameter range in which such interactions slightly counterbalance the loss of activation of G. The membrane receptors’ spatial distribution affects the internal stages of signal amplification, suggesting a functional role for membrane domains and receptor clustering independently of proximity-induced receptor-receptor interactions.

  5. The Garlic Allelochemical Diallyl Disulfide Affects Tomato Root Growth by Influencing Cell Division, Phytohormone Balance and Expansin Gene Expression.

    Science.gov (United States)

    Cheng, Fang; Cheng, Zhihui; Meng, Huanwen; Tang, Xiangwei

    2016-01-01

    Diallyl disulfide (DADS) is a volatile organosulfur compound derived from garlic (Allium sativum L.), and it is known as an allelochemical responsible for the strong allelopathic potential of garlic. The anticancer properties of DADS have been studied in experimental animals and various types of cancer cells, but to date, little is known about its mode of action as an allelochemical at the cytological level. The current research presents further studies on the effects of DADS on tomato (Solanum lycopersicum L.) seed germination, root growth, mitotic index, and cell size in root meristem, as well as the phytohormone levels and expression profile of auxin biosynthesis genes (FZYs), auxin transport genes (SlPINs), and expansin genes (EXPs) in tomato root. The results showed a biphasic, dose-dependent effect on tomato seed germination and root growth under different DADS concentrations. Lower concentrations (0.01-0.62 mM) of DADS significantly promoted root growth, whereas higher levels (6.20-20.67 mM) showed inhibitory effects. Cytological observations showed that the cell length of root meristem was increased and that the mitotic activity of meristematic cells in seedling root tips was enhanced at lower concentrations of DADS. In contrast, DADS at higher concentrations inhibited root growth by affecting both the length and division activity of meristematic cells. However, the cell width of the root meristem was not affected. Additionally, DADS increased the IAA and ZR contents of seedling roots in a dose-dependent manner. The influence on IAA content may be mediated by the up-regulation of FZYs and PINs. Further investigation into the underlying mechanism revealed that the expression levels of tomato EXPs were significantly affected by DADS. The expression levels of EXPB2 and beta-expansin precursor were increased after 3 d, and those of EXP1, EXPB3 and EXLB1 were increased after 5 d of DADS treatment (0.41 mM). This result suggests that tomato root growth may be

  6. The Garlic Allelochemical Diallyl Disulfide Affects Tomato Root Growth by Influencing Cell Division, Phytohormone Balance and Expansin Gene Expression

    Science.gov (United States)

    Cheng, Fang; Cheng, Zhihui; Meng, Huanwen; Tang, Xiangwei

    2016-01-01

    Diallyl disulfide (DADS) is a volatile organosulfur compound derived from garlic (Allium sativum L.), and it is known as an allelochemical responsible for the strong allelopathic potential of garlic. The anticancer properties of DADS have been studied in experimental animals and various types of cancer cells, but to date, little is known about its mode of action as an allelochemical at the cytological level. The current research presents further studies on the effects of DADS on tomato (Solanum lycopersicum L.) seed germination, root growth, mitotic index, and cell size in root meristem, as well as the phytohormone levels and expression profile of auxin biosynthesis genes (FZYs), auxin transport genes (SlPINs), and expansin genes (EXPs) in tomato root. The results showed a biphasic, dose-dependent effect on tomato seed germination and root growth under different DADS concentrations. Lower concentrations (0.01–0.62 mM) of DADS significantly promoted root growth, whereas higher levels (6.20–20.67 mM) showed inhibitory effects. Cytological observations showed that the cell length of root meristem was increased and that the mitotic activity of meristematic cells in seedling root tips was enhanced at lower concentrations of DADS. In contrast, DADS at higher concentrations inhibited root growth by affecting both the length and division activity of meristematic cells. However, the cell width of the root meristem was not affected. Additionally, DADS increased the IAA and ZR contents of seedling roots in a dose-dependent manner. The influence on IAA content may be mediated by the up-regulation of FZYs and PINs. Further investigation into the underlying mechanism revealed that the expression levels of tomato EXPs were significantly affected by DADS. The expression levels of EXPB2 and beta-expansin precursor were increased after 3 d, and those of EXP1, EXPB3 and EXLB1 were increased after 5 d of DADS treatment (0.41 mM). This result suggests that tomato root growth may be

  7. Factors affecting morphogenetic potential in oilseed rape roots of the Skrzeszowicki and Start cultivars

    Directory of Open Access Journals (Sweden)

    Janina Rogozińska

    2014-02-01

    Full Text Available The effect of the origin of root segments, seedling age, growth substances and gelled or liquid media were tested in respect to the morphogenetic potential of rape root segments of Skrzeszowicki (high glucosinolate content and Start (low glucosinolate content cultivars. Callus and roots were formed on all root segments after an approximately 2 week growth period; buds were formed after ca. 4 weeks only on segments adjacent to the hypocotyl. Higher concentrations of auxin and cytokinins were required for bud induction. Cultivar differences in the morphogenetic responses of the root segments were found. They were manifested by the more abundant callus formation (BAP+NAA and more numerous lateral roots and buds (KIN+IBA on segments from the Skrzeszowicki cultivar than from the Start cultivar.

  8. Glycerol Affects Root Development through Regulation of Multiple Pathways in Arabidopsis

    OpenAIRE

    Jun Hu; Yonghong Zhang; Jinfang Wang; Yongming Zhou

    2014-01-01

    Glycerol metabolism has been well studied biochemically. However, the means by which glycerol functions in plant development is not well understood. This study aimed to investigate the mechanism underlying the effects of glycerol on root development in Arabidopsis thaliana. Exogenous glycerol inhibited primary root growth and altered lateral root development in wild-type plants. These phenotypes appeared concurrently with increased endogenous glycerol-3-phosphate (G3P) and H2O2 contents in se...

  9. Root rot diseases of sugarbeet (Beta vulgaris L as affected by defloliation intensity

    Directory of Open Access Journals (Sweden)

    Karadimos Dimitros A.

    2006-01-01

    Full Text Available The aim of this work was to study the effect of sugar beet re-growth after water stress defoliation on root rots of three cultivars (Europa, Rival Corsica, which were spring sown in Thessaly, central Greece, for two growing seasons (2003-04. At the beginning of July, sugar beets were subjected to water deficit with irrigation withholding. A month later, three defoliation levels (control - C, moderate - MD, severe - SD and irrigation were applied. Thus, sugar beets were forced to re-grow and three harvests (15, 30 and 40 days after defoliation - DAD were conducted. Rotted roots per hectare were counted and pathogens were identified. Data were analyzed as a four-factor randomized complete block design with years, defoliation levels, sampling times and cultivars as main factors. The number of rotted roots was increased with the defoliation level and was significantly higher for SD sugar beets (3748 roots ha–1. No significant differences were found between C and MD treatments (1543 and 2116 roots ha–1, respectively. Rival was the most susceptible cultivar to root rots. Sugar beets were more susceptible to rotting 15 and 40 DAD (2778 and 2998 roots ha–1. The causal agents of root rots were the fungi, Fusarium spp., Rhizopus stolonifer, Macrophomina phaseolina and Rhizoctonia solani.

  10. Cluster size and substrate temperature affecting thin film formation during copper cluster deposition on a Si (001) surface

    Institute of Scientific and Technical Information of China (English)

    Gong Heng-Feng; Lü Wei; Wang Lu-Min; Li Gong-Ping

    2012-01-01

    The soft deposition of Cu clusters on a Si (001) surface was studied by molecular dynamics simulations.The embedded atom method,the Stillinger-Weber and the Lennar Jones potentials were used to describe the interactions between the cluster atoms,between the substrate atoms,and between the cluster and the substrate atoms,respectively.The Cu13,Cu55,and Cu147 clusters were investigated at different substrate temperatures.We found that the substrate temperature had a significant effect on the Cu147 cluster.For smaller Cu13 and Cu55 clusters,the substrate temperature in the range of study appeared to have little effect on the mean center-of-mass height.The clusters showed better degrees of epitaxy at 800 K.With the same substrate temperature,the Cu55 cluster demonstrated the highest degree of epitaxy,followed by Cu147 and then Cu13 clusters.In addition,the Cu55 cluster showed the lowest mean center-of-mass height.These results suggested that the Cu55 cluster is a better choice for the thin-film formation among the clusters considered.Our studies may provide insight into the formation of desired Cu thin films on a Si substrate.

  11. Rooting of Mugo pine (Pinus mugo cuttings as affected by IBA, NAA and planting substrate

    Directory of Open Access Journals (Sweden)

    Shahram Sedaghathoor

    2016-07-01

    Full Text Available Aim of study: The effect of planting substrate and concentrations of indole-3-butyric acid (IBA and naphthaleneacetic acid (NAA hormones was studied on the rooting of mugo pine cuttings. Area of study: The research was carried out in Rasht city, Guilan province, Iran. Material and Methods: Both hormones (IBA and NAA were applied at four concentrations of 0, 1000, 2000 and 4000 mg/l. Planting substrates included sand, perlite, cocopeat, sand + perlite, and sand + cocopeat (1:1. Main results: The highest rooting percentage (55% was obtained under the trilateral treatment a2b4c1 (sand × 4000 mg/l NAA × 1000 mg/l IBA. Sand + cocopeat was found to be the best rooting substrate. Research highlights: It is recommended to apply sand with 4000 mg/l and 1000mg/l concentration of experimental hormones (NAA and IBA, respectively. Keywords: auxin; rooting; Pinus mugo; vegetative propagation.

  12. Root suberin forms an extracellular barrier that affects water relations and mineral nutrition in Arabidopsis.

    Directory of Open Access Journals (Sweden)

    Ivan Baxter

    2009-05-01

    Full Text Available Though central to our understanding of how roots perform their vital function of scavenging water and solutes from the soil, no direct genetic evidence currently exists to support the foundational model that suberin acts to form a chemical barrier limiting the extracellular, or apoplastic, transport of water and solutes in plant roots. Using the newly characterized enhanced suberin1 (esb1 mutant, we established a connection in Arabidopsis thaliana between suberin in the root and both water movement through the plant and solute accumulation in the shoot. Esb1 mutants, characterized by increased root suberin, were found to have reduced day time transpiration rates and increased water-use efficiency during their vegetative growth period. Furthermore, these changes in suberin and water transport were associated with decreases in the accumulation of Ca, Mn, and Zn and increases in the accumulation of Na, S, K, As, Se, and Mo in the shoot. Here, we present direct genetic evidence establishing that suberin in the roots plays a critical role in controlling both water and mineral ion uptake and transport to the leaves. The changes observed in the elemental accumulation in leaves are also interpreted as evidence that a significant component of the radial root transport of Ca, Mn, and Zn occurs in the apoplast.

  13. Transport of root-derived CO2 via the transpiration stream affects aboveground tree physiology

    Science.gov (United States)

    Bloemen, J.; McGuire, M. A.; Aubrey, D. P.; Teskey, R. O.; Steppe, K.

    2012-04-01

    Recent research on soil CO2 efflux has shown that belowground autotrophic respiration is largely underestimated using classical net CO2 flux measurements. Aubrey & Teskey (2009) found that in forest ecosystems a substantial portion of the CO2 released from root respiration remained within the root system and was transported aboveground in the stem via the transpiration stream. The magnitude of this upward movement of CO2 from belowground tissues suggested important implications for how we measure above- and belowground respiration. If a considerable fraction of root-respired CO2 is transported aboveground, where it might be fixed in woody and leaf tissues, then we are routinely underestimating the amount of C needed to sustain belowground tissues. In this study, we infused 13C labeled water into the base of field-grown poplar trees as a surrogate for root-respired CO2 to investigate the possible role of root-derived CO2 as substrate for carbon fixation. The label was transported upwards from the base of the tree toward the top. During its ascent, the 13C label was removed from the transpiration stream and fixed by chlorophyll-containing woody (young bark and xylem) and leaf (petiole) tissues. Moreover, based on 13C analysis of gas samples, we observed that up to 88 ± 0.10 % of the label applied was lost to the atmosphere by stem and branch efflux higher in the trees. Given that one-half of root-respired CO2 may follow this internal flux pathway (Aubrey & Teskey, 2009), we calculated that up to 44% of the root-respired CO2 could diffuse to the atmosphere once transported to the stem and branches. Thus, a large portion of CO2 that diffuses out of aboveground tissues may actually result from root respiration. Our results show that CO2 originating belowground can be transported internally to aboveground parts of trees, where it will have an important impact on tree physiology. Internal transport of CO2 indicates that the gas exchange approach to estimating above- and

  14. Root Respiration and Growth in Plantago major as Affected by Vesicular-Arbuscular Mycorrhizal Infection.

    Science.gov (United States)

    Baas, R; van der Werf, A; Lambers, H

    1989-09-01

    Effects of vesicular-arbuscular mycorrhizal (VAM) infection and P on root respiration and dry matter allocation were studied in Plantago major L. ssp. pleiosperma (Pilger). By applying P, the relative growth rate of non-VAM controls and plants colonized by Glomus fasciculatum (Thaxt. sensu Gerdemann) Gerdemann and Trappe was increased to a similar extent (55-67%). However, leaf area ratio was increased more and net assimilation rate per unit leaf area was increased less by VAM infection than by P addition. The lower net assimilation rate could be related to a 20 to 30% higher root respiration rate per unit leaf area of VAM plants. Root respiration per unit dry matter and specific net uptake rates of N and P were increased more by VAM infection than by P addition. Neither the contribution of the alternative respiratory path nor the relative growth rate could account for the differences in root respiration rate between VAM and non-VAM plants. It was estimated that increased fungal respiration (87%) and ion uptake rate (13%) contributed to the higher respiratory activity of VAM roots of P. major.

  15. Root Respiration and Growth in Plantago major as Affected by Vesicular-Arbuscular Mycorrhizal Infection.

    Science.gov (United States)

    Baas, R; van der Werf, A; Lambers, H

    1989-09-01

    Effects of vesicular-arbuscular mycorrhizal (VAM) infection and P on root respiration and dry matter allocation were studied in Plantago major L. ssp. pleiosperma (Pilger). By applying P, the relative growth rate of non-VAM controls and plants colonized by Glomus fasciculatum (Thaxt. sensu Gerdemann) Gerdemann and Trappe was increased to a similar extent (55-67%). However, leaf area ratio was increased more and net assimilation rate per unit leaf area was increased less by VAM infection than by P addition. The lower net assimilation rate could be related to a 20 to 30% higher root respiration rate per unit leaf area of VAM plants. Root respiration per unit dry matter and specific net uptake rates of N and P were increased more by VAM infection than by P addition. Neither the contribution of the alternative respiratory path nor the relative growth rate could account for the differences in root respiration rate between VAM and non-VAM plants. It was estimated that increased fungal respiration (87%) and ion uptake rate (13%) contributed to the higher respiratory activity of VAM roots of P. major. PMID:16667001

  16. Morphological variability in tree root architecture indirectly affects coexistence among competitors in the understory.

    Science.gov (United States)

    Aschehoug, Erik T; Callaway, Ragan M

    2014-07-01

    Interactions between plants can have strong effects on community structure and function. Variability in the morphological, developmental, physiological, and biochemical traits of plants can influence the outcome of plant interactions and thus have important ecological consequences. However, the ecological ramifications of trait variability in plants are poorly understood and have rarely been tested in the field. We experimentally tested the effects of morphological variation in root architecture of Quercus douglasii trees in the field on interactions between understory plants and community composition. Our results indicate that variability among Q. douglasii tree root systems initiates a striking reversal in the competitive effects of dominant understory grass species on a less common species. Trees with a deep-rooted morphology facilitated exotic annual grasses and these annual grasses, in turn, competitively excluded the native perennial bunchgrass, Stipapulchra. In contrast, Q. douglasii trees with shallow-rooted morphologies directly suppressed the growth of exotic annual grasses and indirectly released S. pulchra individuals from competition with these annual grasses. Morphological variation in the root architecture of Q. douglasii created substantial conditionality in the outcomes of competition among species which enhanced the potential for indirect interactions to sustain coexistence and increase community diversity.

  17. Live substrate positively affects root growth and stolon direction in the woodland strawberry, Fragaria vesca

    Directory of Open Access Journals (Sweden)

    Erica Marie Waters

    2015-09-01

    Full Text Available Studies of clonal plant foraging generally focus on growth responses to patch quality once rooted. Here we explore the possibility of true plant foraging; the ability to detect and respond to patch resource status prior to rooting. Two greenhouse experiments were conducted to investigate the morphological changes that occur when individual daughter ramets of Fragaria vesca (woodland strawberry were exposed to air above live (non-sterilized or dead (sterilized substrates. Contact between daughter ramets and substrate was prohibited. Daughter ramet root biomass was significantly larger over live versus dead substrate. Root:shoot ratio also increased over live substrate, a morphological response we interpret as indicative of active nutrient foraging. Daughter ramet root biomass was positively correlated with mother ramet size over live but not dead substrate. Given the choice between a live versus a dead substrate, primary stolons extended preferentially toward live substrates. We conclude that exposure to live substrate drives positive nutrient foraging responses in Fragaria vesca. We propose that volatiles emitted from by the substrates might be effecting the morphological changes that occur during true nutrient foraging.

  18. The Magea gene cluster regulates male germ cell apoptosis without affecting the fertility in mice

    Science.gov (United States)

    Hou, Siyuan; Xian, Li; Shi, Peiliang; Li, Chaojun; Lin, Zhaoyu; Gao, Xiang

    2016-01-01

    While apoptosis is essential for male germ cell development, improper activation of apoptosis in the testis can affect spermatogenesis and cause reproduction defects. Members of the MAGE-A (melanoma antigen family A) gene family are frequently clustered in mammalian genomes and are exclusively expressed in the testes of normal animals but abnormally activated in a wide variety of cancers. We investigated the potential roles of these genes in spermatogenesis by generating a mouse model with a 210-kb genomic deletion encompassing six members of the Magea gene cluster (Magea1, Magea2, Magea3, Magea5, Magea6 and Magea8). Male mice carrying the deletion displayed smaller testes from 2 months old with a marked increase in apoptotic germ cells in the first wave of spermatogenesis. Furthermore, we found that Magea genes prevented stress-induced spermatogenic apoptosis after N-ethyl-N-nitrosourea (ENU) treatment during the adult stage. Mechanistically, deletion of the Magea gene cluster resulted in a dramatic increase in apoptotic germ cells, predominantly spermatocytes, with activation of p53 and induction of Bax in the testes. These observations demonstrate that the Magea genes are crucial in maintaining normal testicular size and protecting germ cells from excessive apoptosis under genotoxic stress. PMID:27226137

  19. The Magea gene cluster regulates male germ cell apoptosis without affecting the fertility in mice.

    Science.gov (United States)

    Hou, Siyuan; Xian, Li; Shi, Peiliang; Li, Chaojun; Lin, Zhaoyu; Gao, Xiang

    2016-01-01

    While apoptosis is essential for male germ cell development, improper activation of apoptosis in the testis can affect spermatogenesis and cause reproduction defects. Members of the MAGE-A (melanoma antigen family A) gene family are frequently clustered in mammalian genomes and are exclusively expressed in the testes of normal animals but abnormally activated in a wide variety of cancers. We investigated the potential roles of these genes in spermatogenesis by generating a mouse model with a 210-kb genomic deletion encompassing six members of the Magea gene cluster (Magea1, Magea2, Magea3, Magea5, Magea6 and Magea8). Male mice carrying the deletion displayed smaller testes from 2 months old with a marked increase in apoptotic germ cells in the first wave of spermatogenesis. Furthermore, we found that Magea genes prevented stress-induced spermatogenic apoptosis after N-ethyl-N-nitrosourea (ENU) treatment during the adult stage. Mechanistically, deletion of the Magea gene cluster resulted in a dramatic increase in apoptotic germ cells, predominantly spermatocytes, with activation of p53 and induction of Bax in the testes. These observations demonstrate that the Magea genes are crucial in maintaining normal testicular size and protecting germ cells from excessive apoptosis under genotoxic stress. PMID:27226137

  20. Traditional processing strongly affects metabolite composition by hydrolysis in Rehmannia glutinosa roots

    NARCIS (Netherlands)

    Chang, W.T.; Choi, Y.H.; Heijden, R. van der; Lee, M.S.; Lin, M.K.; Kong, H.; Kim, H.K.; Verpoorte, R.; Hankemeier, T.; Greef, J. van der; Wang, M.

    2011-01-01

    The processing of biological raw materials is considered to have an important role in the therapeutic application in Traditional Chinese Medicine. The root of Rehmannia glutinosa has to be processed by nine cycles of rice wine immersing, steaming and drying before using in clinical applications. In

  1. Does species richness affect fine root biomass and production in young forest plantations?

    DEFF Research Database (Denmark)

    Domisch, Timo; Finér, Leena; Dawud, Seid Muhie;

    2015-01-01

    Tree species diversity has been reported to increase forest ecosystem above-ground biomass and productivity, but little is known about below-ground biomass and production in diverse mixed forests compared to single-species forests. For testing whether species richness increases below-ground biomass...... and production and thus complementarity between forest tree species in young stands, we determined fine root biomass and production of trees and ground vegetation in two experimental plantations representing gradients in tree species richness. Additionally, we measured tree fine root length and determined...... that functional group identity (i.e. conifers vs. broadleaved species) can be more important for below-ground biomass and production than the species richness itself, as conifers seemed to be more competitive in colonising the soil volume, compared to broadleaved species....

  2. Nitrate reductase and acid phosphatase activities as affected by inorganic phosphate in corn roots

    OpenAIRE

    Marie Kummerova; Józef Buczek

    2014-01-01

    The deficieny of inorganic phosphate in nutrient solution reduces by about 50 per cent NO3- absorption in corn seedlings, it decreases both in vitro and in vivo nitrate reductase (NR) activity, as well the potential and actual NR level and has a very weak effect on NR induction. Acid phosphatases activities increase in corn roots when the plants are grown in nutrient solution without phosphorus. We suggest that inorganic phosphate is required mainly for maintenance of NR activity rather, than...

  3. Movement of carbon to roots of food legumes as affected by soil moisture and fertilizer potassium

    International Nuclear Information System (INIS)

    Food legumes are an important component of agricultural systems in developing countries. They are cultivated in a wide range of environments where soil moisture could be generally considered limiting for optimum growth and yield. In terms of vegetative growth, root systems of plants adapt to extract the limited moisture from dry soils. Although it is known that fertilizer K helps plants mitigate soil moisture stress, this has not been evaluated on a comparative basis in food legumes. Therefore, a study was carried out under controlled conditions to determine the role of K+ in the movement of labelled C in three tropical food legumes that have differing optimal soil-moisture requirements. Common bean (Phaseolus vulgaris), mung bean (Vigna radiata), and cowpea (Vigna unguiculata) were grown under two moisture regimes with three levels of K+ (01, 1.0 and 3.0 mM K). Uniform seedlings of the three species were transplanted into pots containing quartz sand, maintained at two soil-moisture levels (High, less than 25% depleted of available soil moisture; Low, more than 50% depleted), by weighing at 3-day intervals and adding the required water or nutrient solution. The modified nutrient solutions had 0.1, 1.0 or 3.0 mM K+ with 1.5 mM N. The plants were kept in a growth chamber, maintained at 25 deg. /18 deg. C day/night, with a 16-h photoperiod, and at 60% humidity. At the V4 growth stage of each species, four plants were selected randomly, and approximately 1 cm2 of the upper surface of the youngest fully expanded leaf abraded with Carborundum. Thereafter, 5 μL of 14C contained in a 5-mM solution of sucrose (148 KBq) was applied to the abraded area. Another 10 μL of unlabelled sucrose was applied to the same area 10 min later and the plants replaced. After 24 h, they were carefully removed, roots washed, dried and weighed. Thereafter, the samples were ground and digested, and labelled C determined by liquid scintillation. Cowpea, the species most adapted to soil

  4. Clustering

    Directory of Open Access Journals (Sweden)

    Jinfei Liu

    2013-04-01

    Full Text Available DBSCAN is a well-known density-based clustering algorithm which offers advantages for finding clusters of arbitrary shapes compared to partitioning and hierarchical clustering methods. However, there are few papers studying the DBSCAN algorithm under the privacy preserving distributed data mining model, in which the data is distributed between two or more parties, and the parties cooperate to obtain the clustering results without revealing the data at the individual parties. In this paper, we address the problem of two-party privacy preserving DBSCAN clustering. We first propose two protocols for privacy preserving DBSCAN clustering over horizontally and vertically partitioned data respectively and then extend them to arbitrarily partitioned data. We also provide performance analysis and privacy proof of our solution..

  5. Does wheat genetically modified for disease resistance affect root-colonizing pseudomonads and arbuscular mycorrhizal fungi?

    Directory of Open Access Journals (Sweden)

    Joana Beatrice Meyer

    Full Text Available This study aimed to evaluate the impact of genetically modified (GM wheat with introduced pm3b mildew resistance transgene, on two types of root-colonizing microorganisms, namely pseudomonads and arbuscular mycorrhizal fungi (AMF. Our investigations were carried out in field trials over three field seasons and at two locations. Serial dilution in selective King's B medium and microscopy were used to assess the abundance of cultivable pseudomonads and AMF, respectively. We developed a denaturing gradient gel electrophoresis (DGGE method to characterize the diversity of the pqqC gene, which is involved in Pseudomonas phosphate solubilization. A major result was that in the first field season Pseudomonas abundances and diversity on roots of GM pm3b lines, but also on non-GM sister lines were different from those of the parental lines and conventional wheat cultivars. This indicates a strong effect of the procedures by which these plants were created, as GM and sister lines were generated via tissue cultures and propagated in the greenhouse. Moreover, Pseudomonas population sizes and DGGE profiles varied considerably between individual GM lines with different genomic locations of the pm3b transgene. At individual time points, differences in Pseudomonas and AMF accumulation between GM and control lines were detected, but they were not consistent and much less pronounced than differences detected between young and old plants, different conventional wheat cultivars or at different locations and field seasons. Thus, we conclude that impacts of GM wheat on plant-beneficial root-colonizing microorganisms are minor and not of ecological importance. The cultivation-independent pqqC-DGGE approach proved to be a useful tool for monitoring the dynamics of Pseudomonas populations in a wheat field and even sensitive enough for detecting population responses to altered plant physiology.

  6. How do alternative root water uptake models affect the inverse estimation of soil hydraulic parameters and the prediction of evapotranspiration?

    Science.gov (United States)

    Gayler, Sebastian; Salima-Sultana, Daisy; Selle, Benny; Ingwersen, Joachim; Wizemann, Hans-Dieter; Högy, Petra; Streck, Thilo

    2016-04-01

    Soil water extraction by roots affects the dynamics and distribution of soil moisture and controls transpiration, which influences soil-vegetation-atmosphere feedback processes. Consequently, root water uptake requires close attention when predicting water fluxes across the land surface, e.g., in agricultural crop models or in land surface schemes of weather and climate models. The key parameters for a successful simultaneous simulation of soil moisture dynamics and evapotranspiration in Richards equation-based models are the soil hydraulic parameters, which describe the shapes of the soil water retention curve and the soil hydraulic conductivity curve. As measurements of these parameters are expensive and their estimation from basic soil data via pedotransfer functions is rather inaccurate, the values of the soil hydraulic parameters are frequently inversely estimated by fitting the model to measured time series of soil water content and evapotranspiration. It is common to simulate root water uptake and transpiration by simple stress functions, which describe from which soil layer water is absorbed by roots and predict when total crop transpiration is decreased in case of soil water limitations. As for most of the biogeophysical processes simulated in crop and land surface models, there exist several alternative functional relationships for simulating root water uptake and there is no clear reason for preferring one process representation over another. The error associated with alternative representations of root water uptake, however, contributes to structural model uncertainty and the choice of the root water uptake model may have a significant impact on the values of the soil hydraulic parameters estimated inversely. In this study, we use the agroecosystem model system Expert-N to simulate soil moisture dynamics and evapotranspiration at three agricultural field sites located in two contrasting regions in Southwest Germany (Kraichgau, Swabian Alb). The Richards

  7. "God of Small Things": Service Interaction's Roots in Regulatory Focus and Affectivity

    Directory of Open Access Journals (Sweden)

    Tali Seger-Guttmann

    2014-06-01

    Full Text Available We link regulatory focus, positive and negative affective states, and service behaviors to suggest that, salespersons' service interactions depend on their motivation (promotion- or prevention-focused and their emotional responses during the service encounter. Based on in-depth interviews with salespeople, a questionnaire applying the concepts of 'skeleton' (the core of exchange relations and 'tissue' (informal social behaviors was administered to 90 salespeople in apparel stores. Results supported our main assumption that salespeople interact with customers based on their regulatory focus (Promotion and Prevention and affectivity (PA and NA. Promotion focus was positively related to positive tissue behaviors (i.e., extra-role behaviors and to positive affect (PA and negatively related to negative affect (NA. Promotion-focused salespeople are more likely to demonstrate PA and high-quality service performance by adopting extra-role (tissue behaviors. PA and NA fully mediated the relationship between promotion focus and positive tissue behaviors I. Prevention focus was found to be positively correlated with skeleton behaviors (i.e., core behaviors and NA. No relationship was found between prevention focus and PA.

  8. Rooting of healthy and CVC-affected 'Valência' sweet orange stem cuttings, through the use of plant regulators

    Directory of Open Access Journals (Sweden)

    Gustavo Habermann

    2006-01-01

    Full Text Available Citrus variegated chlorosis (CVC is a disease caused by Xylella fastidiosa. Using different concentrations of plant regulators, such as auxins (indole-3-butyric acid and gibberellic acid biosynthesis-inhibitor (paclobutrazol, physiological rooting capacity of healthy and CVC-affected stem cuttings were evaluated in order to investigate the importance of plant hormone imbalance and xylem occlusion in plants with CVC. The percentages of dead, alive and rooted cuttings, cuttings with callus and mean number of roots per cuttings did not show statistical differences in response to the distinct concentrations of synthetic plant regulators. There were differences only between healthy and CVC-affected cuttings. This showed the importance of xylem occlusion and diffusive disturbances in diseased plants, in relation to root initiation capacity and hormonal translocation in the plant tissue.Clorose variegada dos citros (CVC é uma doença causada por Xylella fastidiosa, podendo determinar oclusão do xilema e desbalanço hormonal, o que por fim está relacionado ao processo de iniciação radicial em estacas. Usando diferentes concentrações de fitorreguladores, como auxinas (ácido 3-indol butírico e inibidores da biossíntese de ácido giberélico (paclobutrazol, que são promotores do enraizamento de estacas, verificou-se a capacidade fisiológica de enraizamento de estacas sadias e com CVC, a fim de investigar a importância do desbalanço hormonal e oclusão do xilema em plantas doentes. As porcentagens de estacas mortas, vivas, enraizadas e com calo e o número médio de raízes por estaca não mostraram diferenças estatísticas em resposta às diferentes concentrações dos reguladores vegetais sintéticos. Houve diferenças apenas entre estacas sadias e doentes. Isto aponta a importância da oclusão do xilema e distúrbios difusivos em plantas doentes, em relação à capacidade de iniciação radicial e à translocação hormonal no tecido

  9. Symptom severity, affective and somatic symptom clusters predict poorer social cognition performance in current but not remitted major depressive disorder

    OpenAIRE

    Tracy eAir; Michael James Weightman; Bernhard Theodor Baune

    2015-01-01

    The aim of the study was to investigate the social cognitive functioning of participants with major depressive disorder when compared with healthy controls, and to assess the impact of symptom severity and affective and somatic symptom clusters on social cognition. One hundred and eight adult patients with depression (66 remitted and 42 current) and 52 healthy controls were assessed using the Wechsler Advanced Clinical Solutions: Social Perception Subtest, measuring facial affect recognition ...

  10. "God of Small Things": Service Interaction's Roots in Regulatory Focus and Affectivity

    OpenAIRE

    Tali Seger-Guttmann; Iris Vilnai-Yavetz

    2014-01-01

    We link regulatory focus, positive and negative affective states, and service behaviors to suggest that, salespersons' service interactions depend on their motivation (promotion- or prevention-focused) and their emotional responses during the service encounter. Based on in-depth interviews with salespeople, a questionnaire applying the concepts of 'skeleton' (the core of exchange relations) and 'tissue' (informal social behaviors) was administered to 90 salespeople in apparel stores. Results ...

  11. Sugar transport and nitrate reductase activity rate in roots affect plant adaptation to cold and warm climate plants

    OpenAIRE

    Kafkafi, Uzi

    2009-01-01

    Nitrogen metabolism in the root is controlled by 2 fluxes: 1) nitrate intake from the external solution. 2) Transport of sugar from the leaves. Nitrate reduction to ammonium or direct ammonium uptake produce ammonia in the root cell. When the rate of sugar transport to root cells is slower than their sugar consumption for respiration, ammonia will accumulate and the root cells will die from ammonia toxicity. In nature, plants can be defined with regard to the activity of their root nitrate re...

  12. Symptom severity, affective and somatic symptom clusters predict poorer social cognition performance in current but not remitted major depressive disorder

    Directory of Open Access Journals (Sweden)

    Tracy eAir

    2015-08-01

    Full Text Available The aim of the study was to investigate the social cognitive functioning of participants with major depressive disorder when compared with healthy controls, and to assess the impact of symptom severity and affective and somatic symptom clusters on social cognition. One hundred and eight adult patients with depression (66 remitted and 42 current and 52 healthy controls were assessed using the Wechsler Advanced Clinical Solutions: Social Perception Subtest, measuring facial affect recognition in isolation and in combination with prosody and body language interpretation. While no associations between the diagnostic status (MDD vs controls and any of the social cognition measures were found, severity of depressive and anxious symptoms predicted performance on all social cognition subscales in currently depressed participants, controlling for age, gender, education and psychotropic medication. Moreover, in the current MDD group, an affective depressive symptom cluster was inversely related to performance on the more complex ACS Pairs and Prosody tasks, while a somatic symptom cluster was inversely related to ACS Affect Recognition and Total scores. In contrast, there were no associations between symptom severity or symptom clusters and the WAIS ACS in remitted depression participants. Given the state like nature social deficits in this study, these impairments may cause problems with day to day functioning and have implications in targeted therapeutic interventions.

  13. Shoot Photosynthesis and Root Growth of Hybrid and Conventional Rice Cultivars as Affected by N and K Levels in the Root Zone

    Institute of Scientific and Technical Information of China (English)

    YANGXIAOE; V.ROEMHELD; 等

    1997-01-01

    Root box experiments were conducted to evaluate the effects of N and NK levels in the root zone on shoot photosynthesis and root growth of hybrid an cultivar of rice (Oryza sativa L.) on two paddy soils (clayey and silty).The results showed that dry matter yields in the hybrid and the cultivar were considerably increased by NK supply,bu the effect was greater for the hybrid.Supply of NK in the root zone significantly increased photosynthetic rate of the lower position leaf and the active green leaf area per plant,in which the effects were much more obvious in the hybrid rice than in the cultivar.High NK supply in the root zone stimulated the root growth,and decreased pH and increased the oxidation zone in the rhizosphere in both entries,but to a greater extent in the hybrid .The results indicated that higher NK levels were needed to maintain higher root activity and shoot photosynthetic capacity in rice,particularly in hybrid rice.

  14. Can star cluster environment affect dust input from massive AGB stars?

    CERN Document Server

    Zhukovska, Svitlana; Henning, Thomas

    2015-01-01

    We examine the fraction of massive asymptotic giant branch (AGB) stars remaining bound in their parent star clusters and the effect of irradiation of these stars by intracluster ultraviolet (UV) field. We employ a set of N-body models of dynamical evolution of star clusters rotating in a galactic potential at the solar galactocentric radius. The cluster models are combined with stellar evolution formulae, a library of stellar spectra, and simple models for SiO photodissociation in circumstellar environment (CSE). The initial stellar masses of clusters are varied from $50\\rm M_\\odot$ to $10^{5}\\rm M_\\odot$. Results derived for individual clusters are combined using a mass distribution function for young star clusters. We find that about 30% of massive AGB stars initially born in clusters become members of the field population, while the rest evolves in star clusters. They are irradiated by strong intracluster UV radiation resulting in the decrease of the photodissociation radius of SiO molecules, in many stars...

  15. Constitutive expression of OsIAA9 affects starch granules accumulation and root gravitropic response in Arabidopsis

    Directory of Open Access Journals (Sweden)

    Sha eLuo

    2015-12-01

    Full Text Available Auxin/Indole-3-Acetic Acid (Aux/IAA genes are early auxin response genes ecoding short-lived transcriptional repressors, which regulate auxin signaling in plants by interplay with Auxin Response Factors (ARFs. Most of the Aux/IAA proteins contain four different domains, namely Domain I, Domain II, Domain III and Domain IV. So far all Aux/IAA mutants with auxin-related phenotypes identified in both Arabidopsis and rice (Oryza sativa are dominant gain-of-function mutants with mutations in Domain II of the corresponding Aux/IAA proteins, suggest that Aux/IAA proteins in both Arabidopsis and rice are largely functional redundantly, and they may have conserved functions. We report here the functional characterization of a rice Aux/IAA gene, OsIAA9. RT-PCR results showed that expression of OsIAA9 was induced by exogenously applied auxin, suggesting that OsIAA9 is an auxin response gene. Bioinformatic analysis showed that OsIAA9 has a repressor motif in Domain I, a degron in Domain II, and the conserved amino acid signatures for protein-protein interactions in Domain III and Domain IV. By generating transgenic plants expressing GFP-OsIAA9 and examining florescence in the transgenic plants, we found that OsIAA9 is localized in the nucleus. When transfected into protoplasts isolated from rosette leaves of Arabidopsis, OsIAA9 repressed reporter gene expression, and the repression was partially released by exogenously IAA. These results suggest that OsIAA9 is a canonical Aux/IAA protein. Protoplast transfection assays showed that OsIAA9 interacted ARF5, but not ARF6, 7, 8 and 19. Transgenic Arabidopsis plants expressing OsIAA9 have increased number of lateral roots, and reduced gravitropic response. Further analysis showed that OsIAA9 transgenic Arabidopsis plants accumulated fewer granules in their root tips and the distribution of granules was also affected. Taken together, our study showed that OsIAA9 is a transcriptional repressor, and it regulates

  16. Null mutation of chloride channel 7 (Clcn7) impairs dental root formation but does not affect enamel mineralization.

    Science.gov (United States)

    Guo, Jing; Bervoets, Theodore J M; Henriksen, Kim; Everts, Vincent; Bronckers, Antonius L J J

    2016-02-01

    ClC-7, located in late endosomes and lysosomes, is critical for the function of osteoclasts. Secretion of Cl(-) by the ruffled border of osteoclasts enables H(+) secretion by v-H(+)-ATPases to dissolve bone mineral. Mice lacking ClC-7 show altered lysosomal function that leads to severe lysosomal storage. Maturation ameloblasts are epithelial cells with a ruffled border that secrete Cl(-) as well as endocytose and digest large quantities of enamel matrix proteins during formation of dental enamel. We tested the hypothesis that ClC-7 in maturation ameloblasts is required for intracellular digestion of matrix fragments to complete enamel mineralization. Craniofacial bones and developing teeth in Clcn7(-/-) mice were examined by micro-CT, immunohistochemistry, quantified histomorphometry and electron microscopy. Osteoclasts and ameloblasts in wild-type mice stained intensely with anti-ClC-7 antibody but not in Clcn7(-/-) mice. Craniofacial bones in Clcn7(-/-) mice were severely osteopetrotic and contained 1.4- to 1.6-fold more bone volume, which was less mineralized than the wild-type littermates. In Clcn7(-/-) mice maturation ameloblasts and osteoclasts highly expressed Ae2 as in wild-type mice. However, teeth failed to erupt, incisors were much shorter and roots were disfigured. Molars formed a normal dental crown. In compacted teeth, dentin was slightly less mineralized, enamel did not retain a matrix and mineralized fairly normal. We concluded that ClC-7 is essential for osteoclasts to resorb craniofacial bones to enable tooth eruption and root development. Disruption of Clcn7 reduces bone and dentin mineral density but does not affect enamel mineralization.

  17. Sequencing and transcriptional analysis of the streptococcus thermophilus histamine biosynthesis gene cluster: Factors that affect differential hdca expression

    OpenAIRE

    Calles-Enríquez, Marina; Hjort Eriksen, Benjamin; Skov Andersen, Pia; Rattray, F.; Johansen, Annette H.; Fernández García, María; Ladero Losada, Víctor Manuel; Álvarez González, Miguel Ángel

    2010-01-01

    Histamine, a toxic compound that is formed by the decarboxylation of histidine through the action of microbial decarboxylases, can accumulate in fermented food products. From a total of 69 Streptococcus thermophilus strains screened, two strains, CHCC1524 and CHCC6483, showed the capacity to produce histamine. The hdc clusters of S. thermophilus CHCC1524 and CHCC6483 were sequenced, and the factors that affect histamine biosynthesis and histidine-decarboxylating gene (hdcA) expression were st...

  18. School-based mental health intervention for children in war-affected Burundi: a cluster randomized trial

    OpenAIRE

    Tol, W.A.; Komproe, I. H.; Jordans, M. J. D.; Ndayisaba, A.; Ntamatumba, P.; Sipsma, H.; Smallegange, E.S.; Macy, R.D.; Jong, de, J.

    2014-01-01

    Background: Armed conflicts are associated with a wide range of impacts on the mental health of children and adolescents. We evaluated the effectiveness of a school-based intervention aimed at reducing symptoms of posttraumatic stress disorder, depression, and anxiety (treatment aim); and improving a sense of hope and functioning (preventive aim). Methods: We conducted a cluster randomized trial with 329 children in war-affected Burundi (aged 8 to 17 (mean 12.29 years, standard deviation 1.61...

  19. School-based mental health intervention for children in war-affected Burundi : A cluster randomized trial

    OpenAIRE

    Tol, Wietse A.; Komproe, Ivan H; Jordans, Mark J D; Ndayisaba, Aline; Ntamutumba, Prudence; Sipsma, Heather; Smallegange, Eva S.; Macy, Robert D; de Jong, Joop T. V. M.; Komproe, J

    2014-01-01

    Background: Armed conflicts are associated with a wide range of impacts on the mental health of children and adolescents. We evaluated the effectiveness of a school-based intervention aimed at reducing symptoms of posttraumatic stress disorder, depression, and anxiety (treatment aim); and improving a sense of hope and functioning (preventive aim). Methods: We conducted a cluster randomized trial with 329 children in war-affected Burundi (aged 8 to 17 (mean 12.29 years, standard deviation 1.61...

  20. A systematic review of factors affecting children's right to health in cluster randomized trials in Kenya.

    Science.gov (United States)

    Oduwo, Elizabeth; Edwards, Sarah J L

    2014-01-01

    Following the South African case, Treatment Action Campaign and Others v Minister of Health and Others, the use of 'pilot' studies to investigate interventions already proven efficacious, offered free of charge to government, but confined by the government to a small part of the population, may violate children's right to health, and the negative duty on governments not to prevent access to treatment. The applicants challenged a government decision to offer Nevirapine in a few pilot sites when evidence showed Nevirapine significantly reduced HIV transmission rates and despite donor offers of a free supply. The government refused to expand access, arguing they needed to collect more information, and citing concerns about long-term hazards, side effects, resistance and inadequate infrastructure. The court ruled this violated children's right to health and asked the government to immediately expand access. Cluster randomized trials involving children are increasingly popular, and are often used to reduce 'contamination': the possibility that members of a cluster adopt behavior of other clusters. However, they raise unique issues insufficiently addressed in literature and ethical guidelines. This case provides additional crucial guidance, based on a common human rights framework, for the Kenyan government and other involved stakeholders. Children possess special rights, often represent a 'captive' group, and so motivate extra consideration. In a systematic review, we therefore investigated whether cluster trial designs are used to prevent or delay children's access to treatment in Kenya or otherwise inconsistently with children's right to health as outlined in the above case. Although we did not find state sponsored cluster trials, most had significant public sector involvement. Core obligations under children's right to health were inadequately addressed across trials. Few cluster trials reported rationale for cluster randomization, offered post- trial access or

  1. Direct anastomosis of contralateral C7 nerve root transfer with affected-side inferior trunk for repair of brachial plexus avulsion injury

    Institute of Scientific and Technical Information of China (English)

    Houjun Yan; Changqing Hu; Yingli Jia; Chunjie Cui; Xuefeng Li; Jingyang Zhang

    2006-01-01

    AIM:To observe the effect of direct anastomosis of contralateral C7 nerve root transferred through prespinal route with affected-side inferior trunk for repair of brachial plexus avulsion injury,and investigate its feasibility. METHODS:Two male patients.with the age of 24 and 41 years respectively,were retrieved.When admitted to the hospital,they were diagnosed as brachial plexus avulsion injury.They subjected the operation in the 252 Hospital of Chinese PLA in March 2006 and May 2006 respectively.The proximal end of contralateral C7 nerve root was dissociated to nerve root pore and the distal end was dissociated to anterior and posterior divisions of middle trunk.The injured C7 nerve root was widely dissociated to inferior trunk,medial cord,ulnar nerve and medial head of median nerve.When elbow and shoulder joints were in flexion,the injured C7 nerve root was directly anastomosed with contralateral C7 nerve root in the gap between affected-side cervical vagina vasorum and esophagus with no tensions. RESULTS:Durling 3 to 5 hours of operation,little hemorrhage was found,nerves were not used for connection.Dyspnea,hoarse voice and other complications did not appear,either.In the postoperative 7th to 8th months.electremyogram examination showed that the growth velocity of anastomosed nerve was normal.CONCLUSION:Direct anastomosis of contralateral C7 nerve root transferred through prespinal route with affected-side inferior trunk can be used for repair of brachial plexus avulsion injury with satisfying therapeutic effects.

  2. The regulatory network of cluster-root function and development in phosphate-deficient white lupin (Lupinus albus) identified by transcriptome sequencing.

    Science.gov (United States)

    Wang, Zhengrui; Straub, Daniel; Yang, Huaiyu; Kania, Angelika; Shen, Jianbo; Ludewig, Uwe; Neumann, Günter

    2014-07-01

    Lupinus albus serves as model plant for root-induced mobilization of sparingly soluble soil phosphates via the formation of cluster-roots (CRs) that mediate secretion of protons, citrate, phenolics and acid phosphatases (APases). This study employed next-generation sequencing to investigate the molecular mechanisms behind these complex adaptive responses at the transcriptome level. We compared different stages of CR development, including pre-emergent (PE), juvenile (JU) and the mature (MA) stages. The results confirmed that the primary metabolism underwent significant modifications during CR maturation, promoting the biosynthesis of organic acids, as had been deduced from physiological studies. Citrate catabolism was downregulated, associated with citrate accumulation in MA clusters. Upregulation of the phenylpropanoid pathway reflected the accumulation of phenolics. Specific transcript expression of ALMT and MATE transporter genes correlated with the exudation of citrate and flavonoids. The expression of transcripts related to nucleotide degradation and APases in MA clusters coincided with the re-mobilization and hydrolysis of organic phosphate resources. Most interestingly, hormone-related gene expression suggested a central role of ethylene during CR maturation. This was associated with the upregulation of the iron (Fe)-deficiency regulated network that mediates ethylene-induced expression of Fe-deficiency responses in other species. Finally, transcripts related to abscisic acid and jasmonic acid were upregulated in MA clusters, while auxin- and brassinosteroid-related genes and cytokinin receptors were most strongly expressed during CR initiation. Key regulations proposed by the RNA-seq data were confirmed by quantitative real-time polymerase chain reaction (RT-qPCR) and some physiological analyses. A model for the gene network regulating CR development and function is presented. PMID:24635386

  3. Acupuncture at the "Huatuojiaji" point affects nerve root regional interleukin-1 level in a rat model of lumbar nerve root compression

    Institute of Scientific and Technical Information of China (English)

    Yaochi Wu; Junfeng Zhang; Chongmiao Wang; Yanyan Xie; Jinghui Zhou

    2008-01-01

    BACKGROUND: It has been shown that interleukin-1 (IL-1) may cause inflammatory reactions, which stimulate the nerve root of patients with lumbar intervertebral disc protrusion and leads to pain. Whether the clinical curative effects of acupuncture in the treatment of lumbar and leg pain are linked to an inhibition of local IL-1 secretion is unknown.OBJECTIVE: To assess the influence of acupuncture on IL-1, this study was designed to verify the effects of acupuncture at the "Huatuojiaji (Extra)" point on the nerve root in a rat model of lumbar nerve root compression, compared with administration of meloxicam, a non-steroidal anti-inflammatory drug.DESIGN, TIME AND SETTING: Randomized, controlled, molecular biology experiment, performed at the Experimental Center, Sixth People's Hospital Affiliated to Shanghai Jiao Tong University between September 2005 and April 2006.MATERIALS: Forty healthy adult Sprague Dawley rats of either gender were included in this study. The rats were randomly and evenly divided into the following four groups: normal control, model, acupuncture,and meloxicam groups. Lumbar nerve root compression was induced in rats in the model, acupuncture,and meloxicam groups by inserting a specially made silicon rubber slice at the juncture of the L5 nerve root and the dural sac. The acupuncture needle (pattern number N3030, 30#, 1.5 inch) was purchased from Suzhou Medical Appliance Factory, China. IL-1 enzyme linked immunosorbent assay (ELISA) kit was purchased from Santa Cruz Biotechnology, Inc., USA.METHODS: The acupuncture group was acupunctured at the "Huatuojiaji" point, which is lateral to the compressed L5-6 nerve root, with an acupuncture depth of 0.5 cm. There were two treatment courses, each of involved seven 20-minute acupuncture sessions, one session a day. The meloxicam group was administered intragastrically 3.75 mg/kg meloxicam (5 mg meloxicam/10 mL physiological saline). Rats in the normal control group and model group received an

  4. Genome scan identifies a locus affecting gamma-globin expression in human beta-cluster YAC transgenic mice

    Energy Technology Data Exchange (ETDEWEB)

    Lin, S.D.; Cooper, P.; Fung, J.; Weier, H.U.G.; Rubin, E.M.

    2000-03-01

    Genetic factors affecting post-natal g-globin expression - a major modifier of the severity of both b-thalassemia and sickle cell anemia, have been difficult to study. This is especially so in mice, an organism lacking a globin gene with an expression pattern equivalent to that of human g-globin. To model the human b-cluster in mice, with the goal of screening for loci affecting human g-globin expression in vivo, we introduced a human b-globin cluster YAC transgene into the genome of FVB mice . The b-cluster contained a Greek hereditary persistence of fetal hemoglobin (HPFH) g allele resulting in postnatal expression of human g-globin in transgenic mice. The level of human g-globin for various F1 hybrids derived from crosses between the FVB transgenics and other inbred mouse strains was assessed. The g-globin level of the C3HeB/FVB transgenic mice was noted to be significantly elevated. To map genes affecting postnatal g-globin expression, a 20 centiMorgan (cM) genome scan of a C3HeB/F VB transgenics [prime] FVB backcross was performed, followed by high-resolution marker analysis of promising loci. From this analysis we mapped a locus within a 2.2 cM interval of mouse chromosome 1 at a LOD score of 4.2 that contributes 10.4% of variation in g-globin expression level. Combining transgenic modeling of the human b-globin gene cluster with quantitative trait analysis, we have identified and mapped a murine locus that impacts on human g-globin expression in vivo.

  5. A re-assessment of sucrose signaling involved in cluster-root formation and function in phosphate-deficient white lupin (Lupinus albus).

    Science.gov (United States)

    Wang, Zhengrui; Shen, Jianbo; Ludewig, Uwe; Neumann, Günter

    2015-07-01

    Apart from substrate functions, a signaling role of sucrose in root growth regulation is well established. This raised the question whether sucrose signals might also be involved in formation of cluster-roots (CRs) under phosphate (Pi) limitation, mediating exudation of phosphorus (P)-mobilizing root exudates, e.g. in Lupinus albus and members of the Proteaceae. Earlier studies demonstrated that CR formation in L. albus was mimicked to some extent by external application of high sucrose concentrations (25 mM) in the presence of extremely high P supply (1-10 mM), usually suppressing CR formation. In this study, we re-addressed this question using an axenic hydroponic culture system with normal P supply (0.1 mM) and a range of sucrose applications (0.25-25 mM). The 2.5 mM sucrose concentration was comparable with internal sucrose levels in the zone of CR initiation in first-order laterals of P-deficient plants (3.4 mM) and induced the same CR morphology. Similar to earlier studies, high sucrose concentrations (25 mM) resulted in root thickening and inhibition of root elongation, associated with a 10-fold increase of the internal sucrose level. The sucrose analog palatinose and a combination of glucose/fructose failed to stimulate CR formation under P-sufficient conditions, demonstrating a signal function of sucrose and excluding osmotic or carbon source effects. In contrast to earlier findings, sucrose was able to induce CR formation but had no effect on CR functioning with respect to citrate exudation, in vitro activity and expression of genes encoding phosphoenolpyruvate carboxylase, secretory acid phosphatase and MATE transporters, mediating P-mobilizing functions of CRs.

  6. How the extinction of extragalactic background light affects surface photometry of galaxies, groups and clusters

    CERN Document Server

    Zackrisson, E; Ostlin, G

    2009-01-01

    The faint regions of galaxies, groups and clusters hold important clues about how these objects formed, and surface photometry at optical and near-infrared wavelengths represents a powerful tool for studying such structures. Here, we identify a hitherto unrecognized problem with this technique, related to how the night sky flux is typically measured and subtracted from astronomical images. While most of the sky flux comes from regions between the observer and the target object, a small fraction - the extragalactic background light (EBL) - comes from behind. We argue that since this part of the sky flux can be subject to extinction by dust present in the galaxy/group/cluster studied, standard reduction procedures may lead to a systematic oversubtraction of the EBL. Even very small amounts of extinction can lead to spurious features in radial surface surface brightness profiles and colour maps of extended objects. We assess the likely impact of this effect on a number of topics in extragalactic astronomy where ...

  7. Does pollinator diversity loss affect pollination: a test with the California poppy and clustered tarweed

    OpenAIRE

    Cen, Henry Jiayin

    2015-01-01

    Pollinators are in decline as a result of human activities such as habitat fragmentation. This study examined the effects of habitat fragmentation and reduced bee diversity on the reproductive performance of California poppy, Eschscholzia californica, and clustered tarweed, Deinandra fasciculata, in the San Diego region. We experimentally introduced potted poppy plants in to scrub fragment habitats and natural reserves. We surveyed the potted poppy plants for floral visitors followed by in si...

  8. Altered Phenylpropanoid Metabolism in the Maize Lc-Expressed Sweet Potato (Ipomoea batatas) Affects Storage Root Development.

    Science.gov (United States)

    Wang, Hongxia; Yang, Jun; Zhang, Min; Fan, Weijuan; Firon, Nurit; Pattanaik, Sitakanta; Yuan, Ling; Zhang, Peng

    2016-01-01

    There is no direct evidence of the effect of lignin metabolism on early storage root development in sweet potato. In this study, we found that heterologous expression of the maize leaf color (Lc) gene in sweet potato increased anthocyanin pigment accumulation in the whole plant and resulted in reduced size with an increased length/width ratio, low yield and less starch content in the early storage roots. RT-PCR analysis revealed dramatic up-regulation of the genes involved in the lignin biosynthesis pathway in developing storage roots, leading to greater lignin content in the Lc transgenic lines, compared to the wild type. This was also evidenced by the enhanced lignification of vascular cells in the early storage roots. Furthermore, increased expression of the β-amylase gene in leaves and storage roots also accelerated starch degradation and increased the sugar use efficiency, providing more energy and carbohydrate sources for lignin biosynthesis in the Lc transgenic sweet potato. Lesser starch accumulation was observed in the developing storage roots at the initiation stage in the Lc plants. Our study provides experimental evidence of the basic carbohydrate metabolism underlying the development of storage roots, which is the transformation of lignin biosynthesis to starch biosynthesis. PMID:26727353

  9. Iron fractions in the apoplast of intact root tips of Zea mays L. seedlings affected by nitrogen form

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    The effects of ammonium (NH+4- N ) and ni trate (NO-3- N ) Were examined on Fe fractions and FeCN (ferricyanide) reductase activity in intact root tips (0-3 em)of young maize (Zea mays L. cv. Lenz) in solution culture by using short-term experiment under controlled Fe deficiency conditions (containing high HCO-3 concentration in preculture solution). The results showed that Fe( II ) concentrations in root tip apoplast of maize were only 20-40 nmol/g FW which accounted for 7%-13% of total Fe. Most of Fe in root tips existed as Fe(Ⅲ) compounds. Imposition of the roots to NH+4 - N or NO-3 - N for 60 min led to an increase of Fe( II ) in root tip apoplast. NH+4 - N led to an increased concentration of Fe( II ) and exchangeable Fe (Fe( II ) and Fe (III)) in root tips, while NO-3 - N increased FeCN reductaseactivity. The relationship between pH and Fe fractions,FeCN reductase activity was also discussed.``

  10. Affectivity

    OpenAIRE

    Stenner, Paul; Greco, Monica

    2013-01-01

    The concept of affectivity has assumed central importance in much recent scholarship, and many in the social sciences and humanities now talk of an ‘affective turn’. The concept of affectivity at play in this ‘turn’ remains, however, somewhat vague and slippery. Starting with Silvan Tomkins’ influential theory of affect, this paper will explore the relevance of the general assumptions (or ‘utmost abstractions’) that inform thinking about affectivity. The technological and instrumentalist char...

  11. Factors that affect self-care behaviour of female high school students with dysmenorrhoea: a cluster sampling study.

    Science.gov (United States)

    Chang, Shu-Fang; Chuang, Mei-hua

    2012-04-01

    The purpose of this study was to identify factors that affect the self-care behaviour of female high school students with dysmenorrhoea. This cross-sectional study utilized a questionnaire-based survey to understand the self-care behaviour of female high school students dysmenorrhoeal, along with the factors that affect this behaviour. A cluster random sampling method was adopted and questionnaires were used for data collection. Study participants experienced a moderate level of discomfort from dysmenorrhoea, and perceived dysmenorrhoea as serious. This investigation finds that cues to action raised perceived susceptibility to dysmenorrhoea and the perceived effectiveness of self-care behaviour and, therefore, increased the adoption of self-care behaviour. Hence, school nurses should offer female high school students numerous resources to apply correct self-care behaviour.

  12. How the extinction of extragalactic background light affects surface photometry of galaxies, groups and clusters

    Science.gov (United States)

    Zackrisson, E.; Micheva, G.; Östlin, G.

    2009-08-01

    The faint regions of galaxies, groups and clusters hold important clues about how these objects formed, and surface photometry at optical and near-infrared wavelengths represents a powerful tool for studying such structures. Here, we identify a hitherto unrecognized problem with this technique, related to how the night sky flux is typically measured and subtracted from astronomical images. While most of the sky flux comes from regions between the observer and the target object, a small fraction - the extragalactic background light (EBL) - comes from behind. We argue that since this part of the sky flux can be subjected to extinction by dust present in the galaxy/group/cluster studied, standard reduction procedures may lead to a systematic oversubtraction of the EBL. Even very small amounts of extinction can lead to spurious features in radial surface brightness profiles and colour maps of extended objects. We assess the likely impact of this effect on a number of topics in extragalactic astronomy where very deep surface photometry is currently attempted, including studies of stellar haloes, starburst host galaxies, disc truncations and diffuse intragroup/intracluster light. We argue that EBL extinction may provide at least a partial explanation for the anomalously red colours reported for the haloes of disc galaxies and for the hosts of local starburst galaxies. EBL extinction effects also mimic truncations in discs with unusually high dust opacities, but are unlikely to be the cause of such features in general. Failure to account for EBL extinction can also give rise to a non-negligible underestimate of intragroup and intracluster light at the faintest surface brightness levels currently probed. Finally, we discuss how EBL extinction effects may be exploited to provide an independent constraint on the surface brightness of the EBL, using a combination of surface photometry and direct star counts.

  13. Overexpression of a Foreign Bt Gene in Cotton Affects the Low-Molecular-Weight Components in Root Exudates

    Institute of Scientific and Technical Information of China (English)

    YAN Wei-Dong; SHI Wei-Ming; LI Bao-Hai; ZHANG Min

    2007-01-01

    Most research in the past using genetically modified crops (GM crops) has focused on the ecological safety of foreign gene (i.e., the gene flow), gene products (for example, Bt (Bacillus thuringiensis) protein), and the safety of transgenic food for humans. In this study, changes in both the species and amounts of low-molecular-weight components in cotton (Gossypium hirsutum L.) root exudates after foreign Bt gene overexpression were investigated under different nutritional conditions. Transgenic cotton containing Bt (Bt-cotton), supplemented with all the mineral nutrients, secreted more organic acids than the wild-type cotton (WT). When nitrogen was removed from the full-nutrient solution, the amount of organic acids secretion of Bt-cotton was lesser than that of WT. The roots of the transgenic cotton secreted lesser amounts of amino acids and soluble sugars than the WT roots in the full-nutrient solution. Deficiencies of P and K caused a large increase in the total amino acid and soluble sugar secretions of both Bt-cotton and WT, with larger increases observed in Bt-cotton. Because transferring the foreign Bt gene into cotton can result in alterations in the components of the root exudates, with the effect varying depending on the nutritional status, the cultivation of genetically modified crops, such as Bt-cotton, in soil environments should be more carefully assessed, and the possible effects as a result of the alterations in the root exudate components should be considered.

  14. Stability of Chloropyromorphite in Ryegrass Rhizosphere as Affected by Root-Secreted Low Molecular Weight Organic Acids

    Science.gov (United States)

    Wei, Wei; Wang, Yu; Wang, Zheng; Han, Ruiming; Li, Shiyin; Wei, Zhenggui; Zhang, Yong

    2016-01-01

    Understanding the stability of chloropyromorphite (CPY) is of considerable benefit for improving risk assessment and remediation strategies in contaminated water and soil. The stability of CPY in the rhizosphere of phosphorus-deficient ryegrass was evaluated to elucidate the role of root-secreted low molecular weight organic acids (LMWOAs) on the dissolution of CPY. Results showed that CPY treatments significantly reduced the ryegrass biomass and rhizosphere pH. The presence of calcium nitrate extractable lead (Pb) and phosphorus (P) suggested that CPY in the rhizosphere could be bioavailable, because P and Pb uptake by ryegrass potentially provided a significant concentration gradient that would promote CPY dissolution. Pb accumulation and translocation in ryegrass was found to be significantly higher in P-sufficient conditions than in P-deficient conditions. CPY treatments significantly enhanced root exudation of LMWOAs irrigated with P-nutrient solution or P-free nutrient solution. Oxalic acid was the dominant species in root-secreted LMWOAs of ryegrass under P-free nutrient solution treatments, suggesting that root-secreted oxalic acid may be the driving force of root-induced dissolution of CPY. Hence, our work, provides clarifying hints on the role of LMWOAs in controlling the stability of CPY in the rhizosphere. PMID:27494023

  15. Stability of Chloropyromorphite in Ryegrass Rhizosphere as Affected by Root-Secreted Low Molecular Weight Organic Acids.

    Science.gov (United States)

    Wei, Wei; Wang, Yu; Wang, Zheng; Han, Ruiming; Li, Shiyin; Wei, Zhenggui; Zhang, Yong

    2016-01-01

    Understanding the stability of chloropyromorphite (CPY) is of considerable benefit for improving risk assessment and remediation strategies in contaminated water and soil. The stability of CPY in the rhizosphere of phosphorus-deficient ryegrass was evaluated to elucidate the role of root-secreted low molecular weight organic acids (LMWOAs) on the dissolution of CPY. Results showed that CPY treatments significantly reduced the ryegrass biomass and rhizosphere pH. The presence of calcium nitrate extractable lead (Pb) and phosphorus (P) suggested that CPY in the rhizosphere could be bioavailable, because P and Pb uptake by ryegrass potentially provided a significant concentration gradient that would promote CPY dissolution. Pb accumulation and translocation in ryegrass was found to be significantly higher in P-sufficient conditions than in P-deficient conditions. CPY treatments significantly enhanced root exudation of LMWOAs irrigated with P-nutrient solution or P-free nutrient solution. Oxalic acid was the dominant species in root-secreted LMWOAs of ryegrass under P-free nutrient solution treatments, suggesting that root-secreted oxalic acid may be the driving force of root-induced dissolution of CPY. Hence, our work, provides clarifying hints on the role of LMWOAs in controlling the stability of CPY in the rhizosphere. PMID:27494023

  16. Selective reactivity of monochloramine with extracellular matrix components affects the disinfection of biofilm and detached clusters.

    Science.gov (United States)

    Xue, Zheng; Lee, Woo Hyoung; Coburn, Kimberly M; Seo, Youngwoo

    2014-04-01

    The efficiency of monochloramine disinfection was dependent on the quantity and composition of extracellular polymeric substances (EPS) in biofilms, as monochloramine has a selective reactivity with proteins over polysaccharides. Biofilms with protein-based (Pseudomonas putida) and polysaccharide based EPS (Pseudomonas aeruginosa), as well as biofilms with varied amount of polysaccharide EPS (wild-type and mutant P. aeruginosa), were compared. The different reactivity of EPS components with monochloramine influenced disinfectant penetration, biofilm inactivation, as well as the viability of detached clusters. Monochloramine transport profiling measured by a chloramine-sensitive microelectrode revealed a broader diffusion boundary layer between bulk and biofilm surface in the P. putida biofilm compared to those of P. aeruginosa biofilms. The reaction with proteins in P. putida EPS multiplied both the time and the monochloramine mass required to achieve a full biofilm penetration. Cell viability in biofilms was also spatially influenced by monochloramine diffusion and reaction within biofilms, showing a lower survival in the surface section and a higher persistence in the middle section of the P. putida biofilm compared to the P. aeruginosa biofilms. While polysaccharide EPS promoted biofilm cell viability by obstructing monochloramine reactive sites on bacterial cells, protein EPS hindered monochloramine penetration by reacting with monochloramine and reduced its concentration within biofilms. Furthermore, the persistence of bacterial cells detached from biofilm (over 70% for P. putida and ∼40% for polysaccharide producing P. aeruginosa) suggested that currently recommended monochloramine residual levels may underestimate the risk of water quality deterioration caused by biofilm detachment.

  17. The effect of MTAD, an endodontic irrigant, on fibroblast attachment to periodontally affected root surfaces: A SEM analysis

    Directory of Open Access Journals (Sweden)

    Mostafa Ghandi

    2013-01-01

    Full Text Available Background: Root surface debridement (RSD is necessary to create an environment suitable for reattachment of the periodontium. Root surface conditioning may aid the formation of a biocompatible surface suitable for cell reattachment. BioPure™ MTAD (mixture of Doxycycline, citric acid and a detergent is an endodontic irrigant with antibacterial properties and the ability to remove smear layer. It was hypothesized that MTAD may be useful for root surface conditioning. The efficacy of MTAD as a conditioner was measured by examining fibroblast attachment to root surfaces. Materials and Methods: Thirty-two specimens of human teeth with advanced periodontal disease were used. The surfaces were root planed until smooth. Half of the specimens were treated with 0.9% saline and the other samples with Biopure MTAD. As a negative control group, five further samples were left unscaled with surface calculus. Human gingival fibroblast cells HGF1-PI1 were cultured and poured over the tooth specimens and incubated. After fixation, the samples were sputter-coated with gold and examined with a SEM. The morphology and number of attached, fixed viable cells were examined. The data was analysed using the Mann-Whitney-U statistical test. Results: There was no significant difference between the numbers of attached cells in the experimental group treated with MTAD and the control group treated with saline. Little or no attached cells were seen in the negative control group. Conclusion: RSD created an environment suitable for cell growth and attachment in a laboratory setting. The use of MTAD did not promote the attachment and growth of cells on the surface of human roots following RSD.

  18. Soluble carbohydrate allocation to roots, photosynthetic rate of leaves, and nitrate assimilation as affected by nitrogen stress and irradiance

    Science.gov (United States)

    Henry, L. T.; Raper, C. D. Jr

    1991-01-01

    Upon resupply of exogenous nitrogen to nitrogen-stressed plants, uptake rate of nitrogen is enhanced relative to nonstressed plants. Absorption of nitrogen presumably is dependent on availability of carbohydrates in the roots. A buildup in soluble carbohydrates thus should occur in roots of nitrogen-stressed plants, and upon resupply of exogenous nitrogen the increased uptake rate should be accompanied by a rapid decline in carbohydrates to prestress levels. To evaluate this relationship, three sets of tobacco plants growing in a complete hydroponic solution containing 1.0 mM NO3- were either continued in the complete solution for 21 d, transferred to a minus-nitrogen solution for 21 d, or transferred to a minus-nitrogen solution for 8-9 d and then returned to the 1.0 mM NO3- solution. These nitrogen treatments were imposed upon plants growing at photosynthetic photon flux densities of 700 and 350 micromoles m-2 s-1. Soluble carbohydrate levels in roots increased during onset of nitrogen stress to levels that were fourfold greater than in roots of non-stressed plants. Following resupply of external nitrogen, a rapid resumption of nitrogen uptake was accompanied by a decline in soluble carbohydrates in roots to levels characteristic of nonstressed plants. This pattern of soluble carbohydrate levels in roots during onset of and recovery from nitrogen stress occurred at both irradiance levels. The response of net photosynthetic rate to nitrogen stress could be expressed as a nonlinear function of concentration of reduced nitrogen in leaves. The net photosynthetic rate at a given concentration of reduced nitrogen, however, averaged 10% less at the lower than at the higher irradiance. The decline in net photosynthetic rate per unit of reduced nitrogen in leaves at the lower irradiance was accompanied by an increase in the nitrate fraction of total nitrogen in leaves from 20% at the higher irradiance to 38% at the lower irradiance.

  19. Altered Phenylpropanoid Metabolism in the Maize Lc-Expressed Sweet Potato (Ipomoea batatas) Affects Storage Root Development

    OpenAIRE

    Hongxia Wang; Jun Yang; Min Zhang; Weijuan Fan; Nurit Firon; Sitakanta Pattanaik; Ling Yuan; Peng Zhang

    2016-01-01

    There is no direct evidence of the effect of lignin metabolism on early storage root development in sweet potato. In this study, we found that heterologous expression of the maize leaf color (Lc) gene in sweet potato increased anthocyanin pigment accumulation in the whole plant and resulted in reduced size with an increased length/width ratio, low yield and less starch content in the early storage roots. RT-PCR analysis revealed dramatic up-regulation of the genes involved in the lignin biosy...

  20. GmEXPB2, a Cell Wall β-Expansin, Affects Soybean Nodulation through Modifying Root Architecture and Promoting Nodule Formation and Development.

    Science.gov (United States)

    Li, Xinxin; Zhao, Jing; Tan, Zhiyuan; Zeng, Rensen; Liao, Hong

    2015-12-01

    Nodulation is an essential process for biological nitrogen (N2) fixation in legumes, but its regulation remains poorly understood. Here, a β-expansin gene, GmEXPB2, was found to be critical for soybean (Glycine max) nodulation. GmEXPB2 was preferentially expressed at the early stage of nodule development. β-Glucuronidase staining further showed that GmEXPB2 was mainly localized to the nodule vascular trace and nodule vascular bundles, as well as nodule cortical and parenchyma cells, suggesting that GmEXPB2 might be involved in cell wall modification and extension during nodule formation and development. Overexpression of GmEXPB2 dramatically modified soybean root architecture, increasing the size and number of cortical cells in the root meristematic and elongation zones and expanding root hair density and size of the root hair zone. Confocal microscopy with green fluorescent protein-labeled rhizobium USDA110 cells showed that the infection events were significantly enhanced in the GmEXPB2-overexpressing lines. Moreover, nodule primordium development was earlier in overexpressing lines compared with wild-type plants. Thereby, overexpression of GmEXPB2 in either transgenic soybean hairy roots or whole plants resulted in increased nodule number, nodule mass, and nitrogenase activity and thus elevated plant N and phosphorus content as well as biomass. In contrast, suppression of GmEXPB2 in soybean transgenic composite plants led to smaller infected cells and thus reduced number of big nodules, nodule mass, and nitrogenase activity, thereby inhibiting soybean growth. Taken together, we conclude that GmEXPB2 critically affects soybean nodulation through modifying root architecture and promoting nodule formation and development and subsequently impacts biological N2 fixation and growth of soybean.

  1. The ADH gene cluster SNP rs1789891 and temperamental dimensions in patients with alcohol dependence and affective disorders.

    Science.gov (United States)

    Oniszczenko, Włodzimierz; Rybakowski, Janusz K; Dragan, Wojciech Ł; Grzywacz, Anna; Samochowiec, Jerzy

    2015-08-01

    This study had three objectives: (1) to assess the relationship between the single nucleotide polymorphism (SNP) rs1789891 in the alcohol dehydrogenase gene cluster and alcohol dependence and affective disorders; (2) to assess the differences in the Regulative Theory of Temperament (RTT) traits between an alcohol dependent group, an affective disorders group, and a healthy group; and (3) to assess the relationship between rs1789891 and temperament traits in a healthy group, taking into account the interaction of genotype and sex. The SNP rs1789891 was genotyped in a group of 194 alcohol dependent men, aged 21 to 71 years; 137 patients with affective disorders, including 51 males and 86 females, aged 19 to 85 years; and a group of 207 healthy individuals, including 89 males and 118 females, aged 18 to 71 years. Temperament traits (briskness, perseveration, sensory sensitivity, emotional reactivity, endurance, and activity) were assessed in all groups using the Formal Characteristics of Behaviour-Temperament Inventory. The comparative analysis of genotypic frequencies showed no significant differences between patients with alcoholism or affective disorders and those in the control group. Alcohol dependent men and the affective disorder group were characterised by higher levels of emotional reactivity (p-value 1.4e-5 and 9.84e-7, respectively) and lower levels of briskness, sensory sensitivity, endurance, and activity (p-value from 3.76e-8 to 0.012) when compared to the healthy group. The rs1789891 polymorphism was associated with briskness (p = 0.02), sensory sensitivity (p = 0.036), and activity (p = 0.049). None of the results were statistically significant after Bonferroni correction.

  2. In Azospirillum brasilense, mutations in flmA or flmB genes affect polar flagellum assembly, surface polysaccharides, and attachment to maize roots.

    Science.gov (United States)

    Rossi, Fernando Ariel; Medeot, Daniela Beatriz; Liaudat, Juan Pablo; Pistorio, Mariano; Jofré, Edgardo

    2016-09-01

    Azospirillum brasilense is a soil bacterium capable of promoting plant growth. Several surface components were previously reported to be involved in the attachment of A. brasilense to root plants. Among these components are the exopolysaccharide (EPS), lipopolysaccharide (LPS) and the polar flagellum. Flagellin from polar flagellum is glycosylated and it was suggested that genes involved in such a posttranslational modification are the same ones involved in the biosynthesis of sugars present in the O-antigen of the LPS. In this work, we report on the characterization of two homologs present in A. brasilense Cd, to the well characterized flagellin modification genes, flmA and flmB, from Aeromonas caviae. We show that mutations in either flmA or flmB genes of A. brasilense resulted in non-motile cells due to alterations in the polar flagellum assembly. Moreover, these mutations also affected the capability of A. brasilense cells to adsorb to maize roots and to produce LPS and EPS. By generating a mutant containing the polar flagellum affected in their rotation, we show the importance of the bacterial motility for the early colonization of maize roots.

  3. Soil compaction and organic matter affect conifer seedling nonmycorrhizal and ectomycorrhizal root tip abundance and diversity. Forest Service research paper

    Energy Technology Data Exchange (ETDEWEB)

    Amaranthus, M.P.; Page-Dumroese, D.; Harvey, A.; Cazares, E.; Bednar, L.F.

    1996-05-01

    Three levels of organic matter removal (bole only; bole and crowns; and bole, crowns, and forest floor) and three levels of mechanical soil compaction (no compaction, moderate compaction, and severe soil compaction) were studied as they influence Douglas-fir (Pseudotsuga menziesii var. glauca (Beissn.) Franco) and western white pine (Pinus monticola Dougl. ex D. Don) seedlings following outplanting. Moderate and severe soil compaction significantly reduced nonmycorrhizal root tip abundance on both Douglas-fir and western white pine seedlings (p less than or equal to 0.05). Ectomycorrhizal root tip abundance was significantly reduced on Douglas-fir seedlings in severely compacted areas with bole and crowns and bole, crowns, and forest floor removed. Ectomycorrhizal diversity also was significantly reduced on Douglas-fir seedlings in all severely compacted areas.

  4. Volcanology of Tuzo pipe (Gahcho Kué cluster) — Root-diatreme processes re-interpreted

    Science.gov (United States)

    Seghedi, I.; Maicher, D.; Kurszlaukis, S.

    2009-11-01

    The Middle Cambrian (~ 540 Ma) Gahcho Kué Kimberlite Field is situated about 275 km ENE of Yellowknife, NWT, Canada. The kimberlites were emplaced into 2.6 Ga Archean granitic rocks of the Yellowknife Supergroup. Four larger kimberlite bodies (5034, Tesla, Tuzo, and Hearne) as well as a number of smaller pipes and associated sheets occur in the field. In plan view, the Tuzo pipe has a circular outline at the surface, and it widens towards deeper levels. The pipe infill consists of several types of coherent and fragmental kimberlite facies. Coherent or apparent coherent (possibly welded) kimberlite facies dominate at depth, but also occur at shallow levels, as dikes intruded late in the eruptive sequence or individual coherent kimberlite clasts. The central and shallower portions of the pipe consist of several fragmental kimberlite varieties that are texturally classified as Tuffisitic Kimberlites. The definition, geometry and extent of the geological units are complex and zones controlled by vertical elements are most significant. The fluidal outlines of some of the coherent kimberlite clasts suggest that at least some are the product of disruption of magma that was in a semi-plastic state or even of welded material. Ragged clasts at low levels are inferred to form part of a complex peperite-like system that intrudes the base of the root zone. A variable, often high abundance of local wall-rock xenoliths between and within the kimberlite phases is observed, varying in size from sub-millimeter to several tens of meters. Wall-rock fragments are common at all locations within the pipe but are especially frequent in a domain with a belt-like geometry between 120 and 200 m depth in the pipe. Steeply outward-dipping bedded deposits made up of wall-rock fragments occur in deep levels of the pipe and are especially common under the downward-widening roof segments. The gradational contact relationships of these deposits with the surrounding kimberlite-bearing rocks as well

  5. Pyrabactin regulates root hydraulic properties in maize seedlings by affecting PIP aquaporins in a phosphorylation-dependent manner.

    Science.gov (United States)

    Fan, Wenqiang; Li, Jia; Jia, Jia; Wang, Fei; Cao, Cuiling; Hu, Jingjiang; Mu, Zixin

    2015-09-01

    Pyrabactin, an agonist of abscisic acid (ABA), has led to the isolation and characterization of pyrabactin resistance 1/pyrabactin resistance 1-like (PYR1/PYLs) ABA receptors in Arabidopsis, which has well explained ABA-mediated stomatal movement and stress-related gene expression. In addition to inducing stomatal closure and inhibiting transpiration, ABA can also enhance root hydraulic conductivity (Lpr), thus maintaining water balance under water deficiency-related stress, but its molecular mechanism remains unclear. In the present study, the root hydraulic properties of maize seedlings in response to pyrabactin were compared to those caused by ABA. Similar to ABA, lower concentration of pyrabactin induced a remarkable increase in Lpr as well as in the gene expression of the plasma membrane intrinsic protein (ZmPIP) aquaporin and in the ZmPIP2; 1/2; 2 protein abundance. The pyrabactin-induced enhancement of Lpr was abolished by H2O2 application, indicating that pyrabactin regulates Lpr by modulating ZmPIP at transcriptional, translational and post-translational (activity) level. Pyrabactin-mediated water transport and ZmPIP gene expression were phosphorylation-dependent, suggesting that ABA-PYR1-(PP2C)-protein kinase-AQP signaling pathway may be involved in this process. As we know this is the first established ABA signaling transduction pathway that mediated water transport in roots. This observation further addressed the importance of PYR1/PYLs ABA receptor in regulating plant water use efficiency from the under ground level. Except inhibiting transpiration in leaves, our result introduces the exciting possibility of application ABA agonists for regulating roots water uptake in field, with a species- and dose dependent manner. PMID:26000467

  6. Root resorption

    DEFF Research Database (Denmark)

    Kjaer, Inger

    2014-01-01

    -an ectodermal tissue layer (Malassez′s epithelium), a middle layer-composed by the collagen-mesodermal tissue layer, and an innermost root-close innervation layer. Abnormalities in one of these tissue layers are thought to cause inflammatory processes in the periodontal membrane comparable to inflammatory...... formerly been demonstrated how demyelinization of the myelin sheaths in the peripheral nerves close to the root provoke resorption. Accordingly, conditions affecting these tissue layers can be associated not only with different morphologies but also with general symptoms and diseases (e.g., ectodermal...... orthodontic treatment. The Hypothesis: The hypothesis in this paper is that three different tissue layers covering the root in the so-called periroot sheet can explain signs and symptoms of importance for avoiding root resorption during orthodontic treatment. These different tissue layers are; outermost...

  7. Bioavailable concentrations of germanium and rare earth elements in soil as affected by low molecular weight organic acids and root exudates

    Science.gov (United States)

    Wiche, Oliver; Székely, Balázs; Kummer, Nicolai-Alexeji; Heinemann, Ute; Tesch, Silke; Heilmeier, Hermann

    2014-05-01

    , lanthan, neodymium, gadolinium and erbium in the rhizosphere and therefore the enhancement of bioavailability of the mentioned elements to plants. Based on the suction cup experiment we conclude that in vertical soil profile the bioavailable germanium is heavily affected by the activity of exudates, as the complexation processes of germanium take place at the root zone and below affected by the interplay of the infiltration of citric acid solutions and the actually produced exudates. These studies have been carried out in the framework of the PhytoGerm project, financed by the Federal Ministry of Education and Research, Germany. BS contributed as an Alexander von Humboldt Research Fellow. The authors are grateful to students and laboratory assistants contributing in the field work and sample preparation.

  8. How Do Rare Earth Elements (Lanthanoids Affect Root Development and Protocorm-Like Body Formation in Hybrid CYMBIDIUM?

    Directory of Open Access Journals (Sweden)

    Teixeira da Silva Jaime A.

    2014-09-01

    Full Text Available Only few studies in the plant tissue culture literature have examined the impact of lanthanoids, or rare earth elements, on in vitro plant organogenesis. In this study, using a model plant, hybrid Cymbidium Twilight Moon ‘Day Light’, the impact of six lanthanoids (lanthanum (III nitrate hexahydrate (La(NO33 · 6H2O, cerium (III nitrate hexahydrate (Ce(NO33 · 6H2O, neodymium (III nitrate hexahydrate (Nd(NO33 · 6H2O, praseodymium (III nitrate hexahydrate (Pr(NO33 · 6H2O, samarium (III nitrate hexahydrate (Sm(NO33 · 6H2O, gadolinium (III nitrate hexahydrate (Gd(NO33 · 6H2O on new protocorm-like body (neo-PLB formation on Teixeira Cymbidium (TC medium was examined. 0 (control, 1, 2, 4 and 8 mg·dm-3 of each lanthanoid was tested. All lanthanoids could produce more neo-PLBs and neo-PLB fresh weight than TC medium lacking plant growth regulators (PGRs, suggesting some PGR-like ability of lanthanoids, although PLB-related traits (percentage of half-PLBs forming neo-PLBs; number of neo-PLBs formed per half-PLB; fresh weight of half-PLB + neo-PLBs was always significantly lower than TC medium containing PGRs. Except for Gd, all other lanthanoids had no negative impact on the number of new leaves from neo-PLB-derived shoots, but all lanthanoids showed a significantly lower plant height, shoot fresh weight and shoot dry weight and, in most cases, SPAD (chlorophyll content value. In addition, using the same concentration of the six lanthanoids, the ability to fortify root formation of neo-PLB-derived plantlets was also assessed. Except for Sm, all other lanthanoids significantly increased the number of roots, root fresh and dry weight.

  9. Factors affecting on bond strength of glass fiber post cemented with different resin cements to root canal

    Science.gov (United States)

    Clavijo, V. R. G.; Bandéca, M. C.; Calixto, L. R.; Nadalin, M. R.; Saade, E. G.; Oliveira-Junior, O. B.; Andrade, M. F.

    2009-09-01

    Luting materials provides the retention of endodontic post. However, the failures of endodontic posts predominantly occurred are the losses of retention. Thus, the alternating use to remove the smear layer, open the dentine tubules, and/or etch the inter-tubular dentine can be provided by EDTA. This study was performed to evaluate effect of EDTA on bond strength of glass fiber post cemented with different resin cements to root canal. Fifty bovine incisors were selected and the crowns were removed to obtain a remaining 14-mm-height root. The roots were randomly distributed into five groups: GI: RelyX™ ARC/LED; GII: RelyX™ U100/LED; GIII EDTA/RelyX™ U100/LED; GIV: Multilink™; and GV: EDTA/Multlink™. After endodontic treatment, the post space was prepared with the drills designated for the quartz-coated-carbon-fiber post Aestheti-Post®. Before application of resin cements, root canals were irrigated with 17% EDTA (GIII and GV) during 1 min, rinsed with distilled water and dried using paper points. The light-cured materials were light-activated with UltraLume LED 5 (Ultradent, South Jordan, Utah) with power density of 1315 mW/cm2. Specimens were perpendicularly sectioned into approximately 1 mm thick sections and the stubs were performed on Universal Testing Machine. The analysis of variance (ANOVA) and Tukey’s post-hoc tests showed significant statistical different between RelyX™ ARC (GI) and RelyX™ U100 independent of the pre-treatment (GII to GIII) ( P 0.05) to all resin cements between the Cervical to Apical regions (GI to GV). The use of 17% EDTA showed no difference significant between the resin cements evaluated (GII to GIII; GIV to GV). Within the limitations of the current study, it can be concluded that the use of EDTA did not provide efficiency on bond strength. The RelyX™ ARC showed higher bond strength values than RelyX™ U100.

  10. Metabolic and transcriptional response of central metabolism affected by root endophytic fungus Piriformospora indica under salinity in barley.

    Science.gov (United States)

    Ghaffari, Mohammad Reza; Ghabooli, Mehdi; Khatabi, Behnam; Hajirezaei, Mohammad Reza; Schweizer, Patrick; Salekdeh, Ghasem Hosseini

    2016-04-01

    The root endophytic fungus Piriformospora indica enhances plant adaptation to environmental stress based on general and non-specific plant species mechanisms. In the present study, we integrated the ionomics, metabolomics, and transcriptomics data to identify the genes and metabolic regulatory networks conferring salt tolerance in P. indica-colonized barley plants. To this end, leaf samples were harvested at control (0 mM NaCl) and severe salt stress (300 mM NaCl) in P. indica-colonized and non-inoculated barley plants 4 weeks after fungal inoculation. The metabolome analysis resulted in an identification of a signature containing 14 metabolites and ions conferring tolerance to salt stress. Gene expression analysis has led to the identification of 254 differentially expressed genes at 0 mM NaCl and 391 genes at 300 mM NaCl in P. indica-colonized compared to non-inoculated samples. The integration of metabolome and transcriptome analysis indicated that the major and minor carbohydrate metabolism, nitrogen metabolism, and ethylene biosynthesis pathway might play a role in systemic salt-tolerance in leaf tissue induced by the root-colonized fungus. PMID:26951140

  11. Root-zone acidity and nitrogen source affects Typha latifolia L. growth and uptake kinetics of ammonium and nitrate.

    Science.gov (United States)

    Brix, Hans; Dyhr-Jensen, Kirsten; Lorenzen, Bent

    2002-12-01

    The NH(4)(+) and NO(3)(-) uptake kinetics by Typha latifolia L. were studied after prolonged hydroponics growth at constant pH 3.5, 5.0, 6.5 or 7.0 and with NH(4)(+) or NO(3)(-) as the sole N-source. In addition, the effects of pH and N source on H(+) extrusion and adenine nucleotide content were examined. Typha latifolia was able to grow with both N sources at near neutral pH levels, but the plants had higher relative growth rates, higher tissue concentrations of the major nutrients, higher contents of adenine nucleotides, and higher affinity for uptake of inorganic nitrogen when grown on NH(4)(+). Growth almost completely stopped at pH 3.5, irrespective of N source, probably as a consequence of pH effects on plasma membrane integrity and H(+) influx into the root cells. Tissue concentrations of the major nutrients and adenine nucleotides were severely reduced at low pH, and the uptake capacity for inorganic nitrogen was low, and more so for NO(3)(-)-fed than for NH(4)(+)-fed plants. The maximum uptake rate, V(max), was highest for NH(4)(+) at pH 6.5 (30.9 micro mol h(-1) g(-1) root dry weight) and for NO(3)(-) at pH 5.0 (31.7 micro mol h(-1) g(-1) root dry weight), and less than 10% of these values at pH 3.5. The affinity for uptake as estimated by the half saturation constant, K((1/2)), was lowest at low pH for NH(4)(+) and at high pH for NO(3)(-). The changes in V(max) and K((1/2)) were thus consistent with the theory of increasing competition between cations and H(+) at low pH and between anions and OH(-) at high pH. C(min) was independent of pH, but slightly higher for NO(3)(-) than for NH(4)(+) (C(min)(NH(4)(+)) approximately 0.8 mmol m(-3); C(min)(NO(3)(-)) approximately 2.8 mmol m(-3)). The growth inhibition at low pH was probably due to a reduced nutrient uptake and a consequential limitation of growth by nutrient stress. Typha latifolia seems to be well adapted to growth in wetland soils where NH(4)(+) is the prevailing nitrogen compound, but very low p

  12. Variations in the chemical composition of cassava ( Manihot esculenta Crantz) leaves and roots as affected by genotypic and environmental variation.

    Science.gov (United States)

    Burns, Anna Elizabeth; Gleadow, Roslyn Margaret; Zacarias, Anabela M; Cuambe, Constantino Estevão; Miller, Rebecca Elizabeth; Cavagnaro, Timothy Richard

    2012-05-16

    The purpose of this study was to assess the quality of cassava cultivars, in terms of cyanogenic potential and composition of macro- and micronutrients, sampled from different locations in rural Mozambique. Total cyanide concentrations in fresh cassava tissues were measured using portable cyanide testing kits, and elemental nutrients were later analyzed from dried plant tissue. Variation in cyanogenic potential and nutrient composition occurred both among cultivars and across locations. The majority of cultivars contained >100 ppm total cyanide, fresh weight, and are therefore considered to be dangerously poisonous unless adequately processed before consumption. Leaf cyanogenic and nutrient content varied with plant water status, estimated using carbon isotope discrimination (δ(13)C). The colonization of roots of all cultivars by arbuscular mycorrhizal fungi was also quantified and found to be high, indicating that mycorrhizas could play a key role in plant nutrient acquisition in these low-input farming systems.

  13. Analysis of variables affecting unemployment rate and detecting for cluster in West Java, Central Java, and East Java in 2012

    Science.gov (United States)

    Samuel, Putra A.; Widyaningsih, Yekti; Lestari, Dian

    2016-02-01

    The objective of this study is modeling the Unemployment Rate (UR) in West Java, Central Java, and East Java, with rate of disease, infant mortality rate, educational level, population size, proportion of married people, and GDRP as the explanatory variables. Spatial factors are also considered in the modeling since the closer the distance, the higher the correlation. This study uses the secondary data from BPS (Badan Pusat Statistik). The data will be analyzed using Moran I test, to obtain the information about spatial dependence, and using Spatial Autoregressive modeling to obtain the information, which variables are significant affecting UR and how great the influence of the spatial factors. The result is, variables proportion of married people, rate of disease, and population size are related significantly to UR. In all three regions, the Hotspot of unemployed will also be detected districts/cities using Spatial Scan Statistics Method. The results are 22 districts/cities as a regional group with the highest unemployed (Most likely cluster) in the study area; 2 districts/cities as a regional group with the highest unemployed in West Java; 1 district/city as a regional groups with the highest unemployed in Central Java; 15 districts/cities as a regional group with the highest unemployed in East Java.

  14. Measuring human rights violations in a conflict-affected country: results from a nationwide cluster survey in Central African Republic

    Directory of Open Access Journals (Sweden)

    Roberts Les

    2011-03-01

    Full Text Available Abstract Background Measuring human rights violations is particularly challenging during or after armed conflict. A recent nationwide survey in the Central African Republic produced estimates of rates of grave violations against children and adults affected by armed conflict, using an approach known as the "Neighborhood Method". Methods In June and July, 2009, a random household survey was conducted based on population estimates from the 2003 national census. Clusters were assigned systematically proportional to population size. Respondents in randomly selected households were interviewed regarding incidents of killing, intentional injury, recruitment into armed groups, abduction, sexual abuse and rape between January 1, 2008 and the date of interview, occurring in their homes' and those of their three closest neighbors. Results Sixty of the selected 69 clusters were surveyed. In total, 599 women were interviewed about events in 2,370 households representing 13,669 persons. Estimates of annual rates of each violation occurring per 1000 people in each of two strata are provided for children between the ages of five and 17, adults 18 years of age and older and the entire population five years and older, along with a combined and weighted national rate. The national rates for children age five to 17 were estimated to be 0.98/1000/year (95% CI: 0.18 - 1.78 for recruitment, 2.56/1000/year (95% CI: 1.50 - 3.62 for abduction, 1.13/1000/year (95% CI: 0.33 - 1.93 for intentional injury, 10.72/1000 girls/year (95% CI: 7.40 - 14.04 for rape, and 4.80/1000 girls/year (95% CI: 2.61 - 6.00 for sexual abuse. No reports of any violation against a person under the age of five were recorded and there were no reports of rape or sexual abuse of males. No children were reported to have been killed during the recall period. Rape and abduction were the most frequently reported events. Conclusions The population-based figures greatly augment existing information on

  15. Oral intake of encapsulated dried ginger root powder hardly affects human thermoregulatory function, but appears to facilitate fat utilization

    Science.gov (United States)

    Miyamoto, Mayumi; Matsuzaki, Kentaro; Katakura, Masanori; Hara, Toshiko; Tanabe, Yoko; Shido, Osamu

    2015-10-01

    The present study investigated the impact of a single oral ingestion of ginger on thermoregulatory function and fat oxidation in humans. Morning and afternoon oral intake of 1.0 g dried ginger root powder did not alter rectal temperature, skin blood flow, O2 consumption, CO2 production, and thermal sensation and comfort, or induce sweating at an ambient temperature of 28 °C. Ginger ingestion had no effect on threshold temperatures for skin blood flow or thermal sweating. Serum levels of free fatty acids were significantly elevated at 120 min after ginger ingestion in both the morning and afternoon. Morning ginger intake significantly reduced respiratory exchange ratios and elevated fat oxidation by 13.5 % at 120 min after ingestion. This was not the case in the afternoon. These results suggest that the effect of a single oral ginger administration on the peripheral and central thermoregulatory function is miniscule, but does facilitate fat utilization although the timing of the administration may be relevant.

  16. Chemopreventive effect of Korean Angelica root extract on TRAMP carcinogenesis and integrative "omic" profiling of affected neuroendocrine carcinomas.

    Science.gov (United States)

    Zhang, Jinhui; Wang, Lei; Zhang, Yong; Li, Li; Tang, Suni; Xing, Chengguo; Kim, Sung-Hoon; Jiang, Cheng; Lü, Junxuan

    2015-12-01

    Angelica gigas Nakai (AGN) root ethanol extract exerts anti-cancer activity in several allograft and xenograft models. Here we examined its chemopreventive efficacy through gavage administration against primary carcinogenesis in the transgenic adenocarcinoma of mouse prostate (TRAMP) model. Male C57BL/6 TRAMP mice and wild type littermates were given a daily gavage (5 mg/mouse, Monday-Friday) of AGN or vehicle, beginning at 8 wk of age (WOA). All mice were terminated at 24 WOA, unless earlier euthanasia was necessitated by large tumors. Whereas AGN-treated TRAMP mice decreased dorsolateral prostate lesion growth by 30% (P = 0.009), they developed fewer and smaller neuroendocrine-carcinomas (NE-Ca) (0.12 g/mouse) than vehicle-treated counterparts (0.81 g/mouse, P = 0.037). We analyzed the proteome and transcriptome of banked NE-Ca to gain molecular insights. Angiogenesis-antibody array detected a substantial reduction in AGN-treated NE-Ca of basic fibroblast growth factor (FGF2), an angiogenesis stimulator. iTRAQ proteomics plus data mining suggested changes of genes upstream and downstream of FGF2 functionally consistent with AGN inhibiting FGF2/FGFR1 signaling at different levels of the transduction cascade. Moreover, AGN upregulated mRNA of genes related to immune responses, restored expression of many tumor suppressor genes, and prostate function and muscle differentiation genes. On the other hand, AGN down-regulated mRNA of genes related to neuron signaling, oncofetal antigens, inflammation, and mast cells, Wnt signaling, embryonic morphogenesis, biosynthesis, cell adhesion, motility, invasion, and angiogenesis. These changes suggest not only multiple cancer cell targeting actions of AGN but also impact on the tumor microenvironments such as angiogenesis, inflammation, and immune surveillance.

  17. Structure-function relationships affecting the sensing mechanism of monolayer-protected cluster doped xerogel amperometric glucose biosensors.

    Science.gov (United States)

    DiPasquale, Luke T; Poulos, Nicholas G; Hall, Jackson R; Minocha, Aastha; Bui, Tram Anh; Leopold, Michael C

    2015-07-15

    A systematic study of the structure-function relationships critical to understanding the sensing mechanism of 1st generation amperometric glucose biosensors with an embedded nanoparticle (NP) network is presented. Xerogel-based films featuring embedded glucose oxidase enzyme and doped with alkanethiolate-protected gold NPs, known as monolayer protected clusters (MPCs), exhibit significantly enhanced performance compared to analogous systems without NPs including higher sensitivity, faster response time, and extended linear/dynamic ranges. The proposed mechanism involves diffusion of the glucose to glucose oxidase within the xerogel, enzymatic reaction production of H2O2 with subsequent diffusion to the embedded network of MPCs where it is oxidized, an event immediately reported via fast electron transfer (ET) through the MPC system to the working electrode. Various aspects of the film construct and strategy are systematically probed using amperometry, voltammetry, and solid-state electronic conductivity measurements, including the effects of MPC peripheral chain length, MPC functionalization via place-exchange reaction, MPC core size, and the MPC density or concentration within the xerogel composite films. The collective results of these experiments support the proposed mechanism and identify interparticle spacing and the electronic communication through the MPC network is the most significant factor in the sensing scheme with the diffusional aspects of the mechanism that may be affected by film/MPC hydrophobicity and functionality (i.e., glucose and H2O2 diffusion) shown to be less substantial contributors to the overall enhanced performance. Understanding the structure-function relationships of effective sensing schemes allows for the employment of the strategy for future biosensor design toward clinically relevant targets. PMID:25819004

  18. Molecular analysis of three Ljungan virus isolates reveals a new, close-to-root lineage of the Picornaviridae with a cluster of two unrelated 2A proteins.

    Science.gov (United States)

    Johansson, Susanne; Niklasson, Bo; Maizel, Jacob; Gorbalenya, Alexander E; Lindberg, A Michael

    2002-09-01

    Ljungan virus (LV) is a suspected human pathogen recently isolated from bank voles (Clethrionomys glareolus). In the present study, it is revealed through comparative sequence analysis that three newly determined Swedish LV genomes are closely related and possess a deviant picornavirus-like organization: 5' untranslated region-VP0-VP3-VP1-2A1-2A2-2B-2C-3A-3B-3C-3D-3' untranslated region. The LV genomes and the polyproteins encoded by them exhibit several exceptional features, such as the absence of a predicted maturation cleavage of VP0, a conserved sequence determinant in VP0 that is typically found in VP1 of other picornaviruses, and a cluster of two unrelated 2A proteins. The 2A1 protein is related to the 2A protein of cardio-, erbo-, tescho-, and aphthoviruses, and the 2A2 protein is related to the 2A protein of parechoviruses, kobuviruses, and avian encephalomyelitis virus. The unprecedented association of two structurally different 2A proteins is a feature never previously observed among picornaviruses and implies that their functions are not mutually exclusive. Secondary polyprotein processing of the LV polyprotein is mediated by proteinase 3C (3C(pro)) possessing canonical affinity to Glu and Gln at the P1 position and small amino acid residues at the P1' position. In addition, LV 3C(pro) appears to have unique substrate specificity to Asn, Gln, and Asp and to bulky hydrophobic residues at the P2 and P4 positions, respectively. Phylogenetic analysis suggests that LVs form a separate division, which, together with the Parechovirus genus, has branched off the picornavirus tree most closely to its root. The presence of two 2A proteins indicates that some contemporary picornaviruses with a single 2A may have evolved from the ancestral multi-2A picornavirus.

  19. Root development under drought stress

    OpenAIRE

    Franco Leemhuis, José Antonio

    2011-01-01

    Serving as interfaces between plant and the soil, roots are much more exposed to drought stress than the upper plant parts. Therefore, the root system can be as affected, or even more affected, than the aerial parts of the plant for drought stress (Franco et al., 2011). Nevertheless, the influence of this stress on root activity and development has been much less studied. Undoubtedly, this is due to limitations on accessibility for root observations; being studies on root system dynamics espe...

  20. Cluster beam sources. Part 1. Methods of cluster beams generation

    Directory of Open Access Journals (Sweden)

    A.Ju. Karpenko

    2012-10-01

    Full Text Available The short review on cluster beams generation is proposed. The basic types of cluster sources are considered and the processes leading to cluster formation are analyzed. The parameters, that affects the work of cluster sources are presented.

  1. Capturing Arabidopsis Root Architecture Dynamics with root-fit Reveals Diversity in Responses to Salinity1[W][OPEN

    Science.gov (United States)

    Julkowska, Magdalena M.; Hoefsloot, Huub C.J.; Mol, Selena; Feron, Richard; de Boer, Gert-Jan; Haring, Michel A.; Testerink, Christa

    2014-01-01

    The plant root is the first organ to encounter salinity stress, but the effect of salinity on root system architecture (RSA) remains elusive. Both the reduction in main root (MR) elongation and the redistribution of the root mass between MRs and lateral roots (LRs) are likely to play crucial roles in water extraction efficiency and ion exclusion. To establish which RSA parameters are responsive to salt stress, we performed a detailed time course experiment in which Arabidopsis (Arabidopsis thaliana) seedlings were grown on agar plates under different salt stress conditions. We captured RSA dynamics with quadratic growth functions (root-fit) and summarized the salt-induced differences in RSA dynamics in three growth parameters: MR elongation, average LR elongation, and increase in number of LRs. In the ecotype Columbia-0 accession of Arabidopsis, salt stress affected MR elongation more severely than LR elongation and an increase in LRs, leading to a significantly altered RSA. By quantifying RSA dynamics of 31 different Arabidopsis accessions in control and mild salt stress conditions, different strategies for regulation of MR and LR meristems and root branching were revealed. Different RSA strategies partially correlated with natural variation in abscisic acid sensitivity and different Na+/K+ ratios in shoots of seedlings grown under mild salt stress. Applying root-fit to describe the dynamics of RSA allowed us to uncover the natural diversity in root morphology and cluster it into four response types that otherwise would have been overlooked. PMID:25271266

  2. PATTERN OF ROOTING AND GROWTH OF CUTTINGS OF SOME SPECIES OF INSECTICIDAL AND MEDICINAL IMPORTANCE AS AFFECTED BY GROWTH PROMOTING SUBSTANCES

    OpenAIRE

    Obi, E.A; Aiyelari, O..P; Agele , S.O

    2013-01-01

    This study was designed to examine the effects of promoting substances on bud retention, rooting and plantlets survival of rooted cuttings on selected tree species using growth promoting substances. Stem cuttings were treated with rooting-promoting substances, planted in plastic pots filled with top soil and arranged using a completely randomized design (CRD) in a screen house. Stem cuttings of pepper fruit, guava, bush mango and cashew were obtained from the Teaching and Research Farm, Feder...

  3. Carbon Allocation into Different Fine-Root Classes of Young Abies alba Trees Is Affected More by Phenology than by Simulated Browsing.

    Science.gov (United States)

    Endrulat, Tina; Buchmann, Nina; Brunner, Ivano

    2016-01-01

    Abies alba (European silver fir) was used to investigate possible effects of simulated browsing on C allocation belowground by 13CO2 pulse-labelling at spring, summer or autumn, and by harvesting the trees at the same time point of the labelling or at a later season for biomass and for 13C-allocation into the fine-root system. Before budburst in spring, the leader shoots and 50% of all lateral shoots of half of the investigated 5-year old Abies alba saplings were clipped to simulate browsing. At harvest, different fine-root classes were separated, and starch as an important storage compartment was analysed for concentrations. The phenology had a strong effect on the allocation of the 13C-label from shoots to roots. In spring, shoots did not supply the fine-roots with high amounts of the 13C-label, because the fine-roots contained less than 1% of the applied 13C. In summer and autumn, however, shoots allocated relatively high amounts of the 13C-label to the fine roots. The incorporation of the 13C-label as structural C or as starch into the roots is strongly dependent on the root type and the root diameter. In newly formed fine roots, 3-5% of the applied 13C was incorporated, whereas 1-3% in the ≤0.5 mm root class and 1-1.5% in the >0.5-1.0 mm root class were recorded. Highest 13C-enrichment in the starch was recorded in the newly formed fine roots in autumn. The clipping treatment had a significant positive effect on the amount of allocated 13C-label to the fine roots after the spring labelling, with high relative 13C-contents observed in the ≤0.5 mm and the >0.5-1.0 mm fine-root classes of clipped trees. No effects of the clipping were observed after summer and autumn labelling in the 13C-allocation patterns. Overall, our data imply that the season of C assimilation and, thus, the phenology of trees is the main determinant of the C allocation from shoots to roots and is clearly more important than browsing. PMID:27123860

  4. Will changes in root-zone temperature in boreal spring affect recovery of photosynthesis in Picea mariana and Populus tremuloides in a future climate?

    Science.gov (United States)

    Fréchette, Emmanuelle; Ensminger, Ingo; Bergeron, Yves; Gessler, Arthur; Berninger, Frank

    2011-11-01

    Future climate will alter the soil cover of mosses and snow depths in the boreal forests of eastern Canada. In field manipulation experiments, we assessed the effects of varying moss and snow depths on the physiology of black spruce (Picea -mariana (Mill.) B.S.P.) and trembling aspen (Populus tremuloides Michx.) in the boreal black spruce forest of western Québec. For 1 year, naturally regenerated 10-year-old spruce and aspen were grown with one of the following treatments: additional N fertilization, addition of sphagnum moss cover, removal of mosses, delayed soil thawing through snow and hay addition, or accelerated soil thawing through springtime snow removal. Treatments that involved the addition of insulating moss or snow in the spring caused lower soil temperature, while removing moss and snow in the spring caused elevated soil temperature and thus had a warming effect. Soil warming treatments were associated with greater temperature variability. Additional soil cover, whether moss or snow, increased the rate of photosynthetic recovery in the spring. Moss and snow removal, on the other hand, had the opposite effect and lowered photosynthetic activity, especially in spruce. Maximal electron transport rate (ETR(max)) was, for spruce, 39.5% lower after moss removal than with moss addition, and 16.3% lower with accelerated thawing than with delayed thawing. Impaired photosynthetic recovery in the absence of insulating moss or snow covers was associated with lower foliar N concentrations. Both species were affected in that way, but trembling aspen generally reacted less strongly to all treatments. Our results indicate that a clear negative response of black spruce to changes in root-zone temperature should be anticipated in a future climate. Reduced moss cover and snow depth could adversely affect the photosynthetic capacities of black spruce, while having only minor effects on trembling aspen. PMID:22021010

  5. Roots Revisited.

    Science.gov (United States)

    Hughes, Barnabas

    1998-01-01

    Offers historical information about square roots. Presents three different methods--Hero's method, visual method, and remainder method--which can be used to teach the finding of square roots and one method for determining cube roots. (ASK)

  6. Instruments and methods for the quantitative measurement of factors affecting hygienist/dentist efforts during scaling and root planing of the teeth.

    Science.gov (United States)

    White, D J; Cox, E R; Arends, J; Nieborg, J H; Leydsman, H; Wieringa, D W; Dijkman, A G; Ruben, J R

    1996-01-01

    Manual calculus debridement through scaling accounts for a significant proportion of hygienist efforts in dental and periodontal practices. Despite this, little is quantitatively known concerning the effects of instruments, technique and treatments on debridement (scaling) efficiency or efficacy. The total work effort expended by therapists in calculus debridement results from the sum of the efforts associated with each scaling stroke. Each scaling stroke, in turn, is affected by a variety of physical forces, including those in the control of the therapist and those intrinsic to the calculus substrate. The development of procedures and treatments to facilitate easier calculus removal requires consideration of the physical and technique-related factors which contribute to hygienist effort. Instruments have recently been developed which can quantitatively measure force dynamics associated with scaling procedures, including both therapist-applied forces and forces developed due to the extreme hardness and tenacity of supra- and subgingival calculus deposits. The scaling instrument developed to quantitatively record developed forces in scaling, the Quanticalc, can be used for the assessment of techniques and treatments which can soften calculus, facilitating easier debridement. The device can also be used to instruct therapists on factors contributing to surface roughness and tactile response to these factors. The scaling instrument developed to quantitatively measure therapist applied forces in scaling, the Zappa device, can be used for assessment of techniques which can increase the efficiency of calculus removal with minimal damage to sound root substance. In this paper, the force dynamics associated with manual scaling procedures of dental professionals are defined. These force dynamics account for the total work expended by hygienists and other professionals in the important task of calculus removal. Using this as a foundation, the design, use, calibration and

  7. Evaluation of a Classroom-Based Psychosocial Intervention in Conflict-Affected Nepal: A Cluster Randomized Controlled Trial

    Science.gov (United States)

    Jordans, Mark J. D.; Komproe, Ivan H.; Tol, Wietse A.; Kohrt, Brandon A.; Luitel, Nagendra P.; Macy, Robert D.; de Jong, Joop T. V. M.

    2010-01-01

    Background: In situations of ongoing violence, childhood psychosocial and mental health problems require care. However, resources and evidence for adequate interventions are scarce for children in low- and middle-income countries. This study evaluated a school-based psychosocial intervention in conflict-affected, rural Nepal. Methods: A cluster…

  8. Arabidopsis thaliana AtUTr7 Encodes a Golgi-Localized UDP-Glucose/UDP-Galactose Transporter that Affects Lateral Root Emergence

    Institute of Scientific and Technical Information of China (English)

    Michael Handford; Cecilia Rodríguez-Furlán; Lorena Marchant; Marcelo Segura; Daniela Gómez; Elena Alvarez-Buyll; Guang-Yan Xiong; Markus Pauly; Ariel Orellana

    2012-01-01

    Nucleotide sugar transporters (NSTs) are antiporters comprising a gene family that plays a fundamental role in the biosynthesis of complex cell wall polysaccharides and glycoproteins in plants.However,due to the limited number of related mutants that have observable phenotypes,the biological function(s) of most NSTs in cell wall biosynthesis and assembly have remained elusive.Here,we report the characterization of AtUTr7 from Arabidopsis (Arabidopsis thaliana (L.) Heynh.),which is homologous to multi-specific UDP-sugar transporters from Drosophila melanogaster,humans,and Caenorhabditis elegans.We show that AtUTr7 possesses the common structural characteristics conserved among NSTs.Using a green fluorescent protein (GFP) tagged version,we demonstrate that AtUTr7 is localized in the Golgi apparatus.We also show that AtUTr7 is widely expressed,especially in the roots and in specific floral organs.Additionally,the results of an in vitro nucleotide sugar transport assay carried out with a tobacco and a yeast expression system suggest that AtUTr7 is capable of transferring UDP-Gal and UDP-GIc,but not a range of other UDP-and GDP-sugars,into the Golgi lumen.Mutants lacking expression of AtUTr7 exhibited an early proliferation of lateral roots as well as distorted root hairs when cultivated at high sucrose concentrations.Furthermore,the distribution of homogalacturonan with a low degree of methyl esterification differed in lateral root tips of the mutant compared to wild-type plants,although additional analytical procedures revealed no further differences in the composition of the root cell walls.This evidence suggests that the transport of UDP-Gal and UDP-GIc into the Golgi under conditions of high root biomass production plays a role in lateral root and root hair development.

  9. PATTERN OF ROOTING AND GROWTH OF CUTTINGS OF SOME SPECIES OF INSECTICIDAL AND MEDICINAL IMPORTANCE AS AFFECTED BY GROWTH PROMOTING SUBSTANCES

    Directory of Open Access Journals (Sweden)

    Obi, E.A

    2013-06-01

    Full Text Available This study was designed to examine the effects of promoting substances on bud retention, rooting and plantlets survival of rooted cuttings on selected tree species using growth promoting substances. Stem cuttings were treated with rooting-promoting substances, planted in plastic pots filled with top soil and arranged using a completely randomized design (CRD in a screen house. Stem cuttings of pepper fruit, guava, bush mango and cashew were obtained from the Teaching and Research Farm, Federal University of Technology, Akure, Nigeria. The experiments were conducted in 2010. The effects of growth promoting substances namely indole-3-butyric acid (IBA, indole-3-acetic acid (IAA and 1-naphthalene acetic acid (NAA applied 50 µM concentration and coconut water (50% dilution were evaluated on adventitious root formation, shoot growth (bud retention and survival of plantlets of hard- to semi-hardwood cuttings of tested tree species. The effects of growth promoting substances were significant on emergence of plantlets (rooting, growth and survival of plantlets. Number of sprouts (plantlets produced were highest in guava and pepper fruit followed by bush mango and cashew. The cuttings from guava and pepper fruit treated with coconut water and NAA promoted the survival of plantlets. Coconut water and NAA were found better than IBA and IAA in terms of bud retention and rooting, leaf development and survival of plantlets. In most of the tested species, wilting of leaves commenced 6 weeks after planting (WAP and attained 100% mortality thereafter except for pepper fruit cuttings dipped in coconut water. The treatments modified the rooting response among species by promoting percentages of rooting, reduction in bud abscission and plantlet survival. The results affirmed the possibility of propagating plantlets from stem cuttings of the tested species using growth promoting substances.

  10. Factors affecting induction of shoot cluster of Artemisia annua%青蒿丛生芽诱导影响因素的研究

    Institute of Scientific and Technical Information of China (English)

    耿飒; 姬生栋; 袁金云; 卢龙斗; 叶和春; 李国凤

    2004-01-01

    目的对影响青蒿丛生芽诱导因素进行基础性研究.方法把常规的植物组织培养技术应用于调控青蒿中次生代谢产物青蒿素的生物合成代谢.结果青蒿的基因型,激素和基本培养基对丛生芽的发生有显著影响,而光强在1000~6000lx和温度在20℃~30℃对丛生芽的发生影响不大;在5种基因型的青蒿中,025丛生芽的诱导率最高;诱导丛生芽的激素组合是6-BA 2.0mg/L和NAA 0.15mg/L;另外,离子在青蒿丛生芽的诱导和青蒿素的生物合成过程中起着非常重要的作用.结论组织培养条件下,青蒿丛生芽的诱导及青蒿素的生物合成可以通过理化因子有效地进行调控.%Object To study the factors affecting the induction of shoot cluster of Artemisia annua.Methods Conventional plant tissue culture technology was applied to regulate the biosynthetic metabolism of secondary metabolism product,artemisinin of A.annua.Results Effects of genotype,hormones,basal medium on the induction of A.annua shoot cluster were notable,while that of light intensity ranging between 1000-6000 lx and temperature ranging between 20 ℃-30 ℃ were not.Among the five A.annua strains used,the induction ratio of strain 025 was the best.The optimal concentration for induction of shoot cluster was 6-BA 2.0 mg/L and NAA 0.15 mg/L.Ions were also found to be very important in the shoot cluster induction and the biosynthesis of artemisnin.Conclusion Effective regulation of induction of A.annua shoot cluster and artemisinin biosynthesis can be carried out via the regulation of physical and chemical factors.

  11. Arabidopsis phosphatidylinositol monophosphate 5-kinase 2 is involved in root gravitropism through regulation of polar auxin transport by affecting the cycling of PIN proteins.

    Science.gov (United States)

    Mei, Yu; Jia, Wen-Jing; Chu, Yu-Jia; Xue, Hong-Wei

    2012-03-01

    Phosphatidylinositol monophosphate 5-kinase (PIP5K) catalyzes the synthesis of PI-4,5-bisphosphate (PtdIns(4,5)P(2)) by phosphorylation of PI-4-phosphate at the 5 position of the inositol ring, and is involved in regulating multiple developmental processes and stress responses. We here report on the functional characterization of Arabidopsis PIP5K2, which is expressed during lateral root initiation and elongation, and whose expression is enhanced by exogenous auxin. The knockout mutant pip5k2 shows reduced lateral root formation, which could be recovered with exogenous auxin, and interestingly, delayed root gravity response that could not be recovered with exogenous auxin. Crossing with the DR5-GUS marker line and measurement of free IAA content confirmed the reduced auxin accumulation in pip5k2. In addition, analysis using the membrane-selective dye FM4-64 revealed the decelerated vesicle trafficking caused by PtdIns(4,5)P(2) reduction, which hence results in suppressed cycling of PIN proteins (PIN2 and 3), and delayed redistribution of PIN2 and auxin under gravistimulation in pip5k2 roots. On the contrary, PtdIns(4,5)P(2) significantly enhanced the vesicle trafficking and cycling of PIN proteins. These results demonstrate that PIP5K2 is involved in regulating lateral root formation and root gravity response, and reveal a critical role of PIP5K2/PtdIns(4,5)P(2) in root development through regulation of PIN proteins, providing direct evidence of crosstalk between the phosphatidylinositol signaling pathway and auxin response, and new insights into the control of polar auxin transport. PMID:21894193

  12. Stand establishment, root development and yield of winter wheat as affected by tillage and straw mulch in the water deifcit hilly region of southwestern China

    Institute of Scientific and Technical Information of China (English)

    LI Chao-su; LI Jin-gang; TANG Yong-lu; WU Xiao-li; WU Chun; HUANG Gang; ZENG Hui

    2016-01-01

    Good crop stand establishment and root system development are essential for optimum grain yield of dryland wheat (Triti-cum aestivumL.). At present, little is known about the effect of tilage and straw mulch on the root system of wheat under dryland areas in southwestern China. The aim of this study was to evaluate the effect of three tilage treatments (no-til, NT; rotary til, RT; conventional til, CT) and two crop residue management practices (straw mulch, ML; non-straw mulch, NML) on stand establishment, root growth and grain yield of wheat. NT resulted in lower soil cover thickness for the wheat seed, higher number of uncovered seeds, lower percentage of seedling-less ridges and lower tiler density compared to RT and CT; ML resulted in higher tiler density compared to NML. Straw mulching resulted in more soil water content and root length density (RLD) at most of the growth stages and soil depths. The maximum RLD, root surface area density and root dry matter density were obtained under NT. In the topmost 10 cm soil layer, higher RLD values were found under NT than those under RT and CT. There were no signiifcant differences in the yield or yield components of wheat among the tilage treatments in 2011–2012, but NT resulted in a signiifcant higher yield compared to RT and CT in 2012–2013. Grain yield was signiifcantly higher in ML compared to in NML. A strong relationship was observed between the water-use efifciency and the grain yield. Both NT and ML proved beneifcial for wheat in term of maintaining higher tiler density, better soil water status and root growth, leading to a higher grain yield and enhanced water-use efifciency, especialy in a low rainfal year.

  13. Arabidopsis phosphatidylinositol monophosphate 5-kinase 2 is involved in root gravitropism through regulation of polar auxin transport by affecting the cycling of PIN proteins

    Institute of Scientific and Technical Information of China (English)

    Yu Mei; Wen-Jing Jia; Yu-Jia Chu; Hong-Wei Xue

    2012-01-01

    Phosphatidylinositol monophosphate 5-kinase(PIP5K)catalyzes the synthesis of PI-4,5-bisphosphate(PtdIns(4,5)P2)by phosphorylation of PI-4-phosphate at the 5 position of the inositol ring,and is involved in regulating multiple developmental processes and stress responses.We here report on the functional characterization of Arabidopsis PIP5K2,which is expressed during lateral root initiation and elongation,and whose expression is enhanced by exogenous auxin.The knockout mutant pip5k2 shows reduced lateral root formation,which could be recovered with exogenous auxin,and interestingly,delayed root gravity response that could not be recovered with exogenous auxin.Crossing with the DR5-GUS marker line and measurement of free IAA content confirmed the reduced auxin accumulation in pip5k2.In addition,analysis using the membrane-selective dye FM4-64 revealed the decelerated vesicle trafficking caused by PtdIns(4,5)P2 reduction,which hence results in suppressed cycling of PIN proteins(PIN2 and 3),and delayed redistribution of PIN2 and auxin under gravistimulation in pipSk2 roots.On the contrary,PtdIns(4,5)P2 significantly enhanced the vesicle trafficking and cycling of PIN proteins.These results demonstrate that PIP5K2 is involved in regulating lateral root formation and root gravity response,and reveal a critical role of PIP5K2/Ptdlns(4,5)P2 in root development through regulation of PIN proteins,providing direct evidence of crosstalk between the phosphatidylinositol signaling pathway and auxin response,and new insights into the control of polar auxin transport.

  14. Root fractures

    DEFF Research Database (Denmark)

    Andreasen, Jens Ove; Christensen, Søren Steno Ahrensburg; Tsilingaridis, Georgios

    2012-01-01

    The purpose of this study was to analyze tooth loss after root fractures and to assess the influence of the type of healing and the location of the root fracture. Furthermore, the actual cause of tooth loss was analyzed.......The purpose of this study was to analyze tooth loss after root fractures and to assess the influence of the type of healing and the location of the root fracture. Furthermore, the actual cause of tooth loss was analyzed....

  15. Sulfate and thiol levels in roots and shoot of sulfur-deprived spinach plants as affected by high pedospheric sulfate levels

    NARCIS (Netherlands)

    Poortinga, AM; de Kok, LJ

    2000-01-01

    Sulfur-deprivation of spinach resulted in a reduced growth, a decreased shoot/root ratio and an increase in dry matter content. The content of sulfur, thiols and soluble proteins was strongly decreased, whereas that of nitrate and free amino acids was increased. When sulfur-deprived plants were tran

  16. Ca2+- and Mg2+-ATPase activities in winter wheat root plasma membranes as affected by NaCl stress during growth

    NARCIS (Netherlands)

    Mansour, MMF; van Hasselt, PR; Kuiper, PJC

    1998-01-01

    Winter wheat seedlings were grown in Hoagland nutrient solution with or without 100 mmol/L NaCl added. Plasma membranes from root cells were prepared by aqueous polymer two phase partitioning and the stimulation of plasma membrane ATPase activity by Mg2+ and Ca2+ was investigated. The enzyme was act

  17. Nitrogen use efficiency by a slow-growing species as affected by CO2 levels, root temperature, N source and availability.

    Science.gov (United States)

    Cruz, Cristina; Lips, Herman; Martins-Loução, Maria Amélia

    2003-12-01

    This study examines the importance of N source and concentration on plant response to distinct CO2 concentrations and root temperatures. The experimental design of this work was a factorial combination of: CO2 concentration, nitrogen concentration, nitrogen source and root temperature. Carob (Ceratonia siliqua L.) was assessed as a potential model of a slow growing Mediterranean species. The results showed that: 1) biomass increment under high CO2 varied between 13 and 100% in relation to plants grown under the same conditions but at ambient CO2 concentrations, depending on the root temperature and nitrogen source; 2) nitrate-fed plants attained a larger increase in biomass production compared to ammonium-fed ones. This performance seems to be linked to the co-ordinated regulation of the activities of glutamine synthetase and sucrose phosphate synthase. The variations in the magnitude and nature of growth responses to elevated CO2 observed resulted in substantial changes in the chemical composition of the plant material and consequently in plant nitrogen use efficiency. Although performed with seedlings and under controlled conditions, this work emphasizes the importance of the nitrogen source used by the plants, a factor rarely taken into consideration when forecasting plant responses to global changes. Particularly, the results presented here, highlight the potential for uncoupling biomass accumulation from increment of air CO2 concentration and show that more than nitrogen availability N source may offset positive plant growth responses under elevated CO2 and root temperature.

  18. Square Root +

    Science.gov (United States)

    Frederiksen, John G.

    1969-01-01

    A rational presentation of the so-called long division method for extracting the square root of a number. Diagrams are used to show relationship of this technique to the binomial theorem. Presentation exposes student to many facets of mathematics in addition to the mechanics of funding square root and cube root. Geometry, algebraic statements,…

  19. Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation

    Science.gov (United States)

    Zheng, Kaijie; Tian, Hainan; Hu, Qingnan; Guo, Hongyan; Yang, Li; Cai, Ling; Wang, Xutong; Liu, Bao; Wang, Shucai

    2016-01-01

    In Arabidopsis, a MYB-bHLH-WD40 (MBW) transcriptional activator complex activates the homeodomain protein gene GLABRA2 (GL2), leading to the promotion of trichome formation and inhibition of root hair formation. The same MBW complex also activates single-repeat R3 MYB genes. R3 MYBs in turn, play a negative feedback role by competing with R2R3 MYB proteins for binding bHLH proteins, thus blocking the formation of the MBW complex. By BLASTing the rice (Oryza sativa) protein database using the entire amino acid sequence of Arabidopsis R3 MYB transcription factor TRICHOMELESS1 (TCL1), we found that there are two genes in rice genome encoding R3 MYB transcription factors, namely Oryza sativa TRICHOMELESS1 (OsTCL1) and OsTCL2. Expressing OsTCL1 in Arabidopsis inhibited trichome formation and promoted root hair formation, and OsTCL1 interacted with GL3 when tested in Arabidopsis protoplasts. Consistent with these observations, expression levels of GL2, R2R3 MYB transcription factor gene GLABRA1 (GL1) and several R3 MYB genes were greatly reduced, indicating that OsTCL1 is functional R3 MYB. However, trichome and root hair formation in transgenic rice plants overexpressing OsTCL1 remained largely unchanged, and elevated expression of OsGL2 was observed in the transgenic rice plants, indicating that rice may use different mechanisms to regulate trichome formation. PMID:26758286

  20. Arabidopsis phosphatidylinositol monophosphate 5-kinase 2 is involved in root gravitropism through regulation of polar auxin transport by affecting the cycling of PIN proteins

    OpenAIRE

    Mei, Yu; Jia, Wen-Jing; Chu, Yu-Jia; Xue, Hong-Wei

    2011-01-01

    Phosphatidylinositol monophosphate 5-kinase (PIP5K) catalyzes the synthesis of PI-4,5-bisphosphate (PtdIns(4,5)P2) by phosphorylation of PI-4-phosphate at the 5 position of the inositol ring, and is involved in regulating multiple developmental processes and stress responses. We here report on the functional characterization of Arabidopsis PIP5K2, which is expressed during lateral root initiation and elongation, and whose expression is enhanced by exogenous auxin. The knockout mutant pip5k...

  1. crinkle, a novel symbiotic mutant that affects the infection thread growth and alters the root hair, trichome, and seed development in Lotus japonicus.

    Science.gov (United States)

    Tansengco, Myra L; Hayashi, Makoto; Kawaguchi, Masayoshi; Imaizumi-Anraku, Haruko; Murooka, Yoshikatsu

    2003-03-01

    To elucidate the mechanisms involved in Rhizobium-legume symbiosis, we examined a novel symbiotic mutant, crinkle (Ljsym79), from the model legume Lotus japonicus. On nitrogen-starved medium, crinkle mutants inoculated with the symbiont bacterium Mesorhizobium loti MAFF 303099 showed severe nitrogen deficiency symptoms. This mutant was characterized by the production of many bumps and small, white, uninfected nodule-like structures. Few nodules were pale-pink and irregularly shaped with nitrogen-fixing bacteroids and expressing leghemoglobin mRNA. Morphological analysis of infected roots showed that nodulation in crinkle mutants is blocked at the stage of the infection process. Confocal microscopy and histological examination of crinkle nodules revealed that infection threads were arrested upon penetrating the epidermal cells. Starch accumulation in uninfected cells and undeveloped vascular bundles were also noted in crinkle nodules. Results suggest that the Crinkle gene controls the infection process that is crucial during the early stage of nodule organogenesis. Aside from the symbiotic phenotypes, crinkle mutants also developed morphological alterations, such as crinkly or wavy trichomes, short seedpods with aborted embryos, and swollen root hairs. crinkle is therefore required for symbiotic nodule development and for other aspects of plant development.

  2. Root patterning

    NARCIS (Netherlands)

    Scheres, Ben; Laskowski, Marta

    2016-01-01

    The mechanisms that pattern lateral root primordial are essential for the elaboration of root system architecture, a trait of key importance for future crop breeding. But which are most important: periodic or local cues? In this issue of Journal of Experimental Botany (pages 1411-1420), Kircher a

  3. Root conditioning in periodontology — Revisited

    OpenAIRE

    Nanda, Tarun; Jain, Sanjeev; Kaur, Harjit; Kapoor, Daljit; Nanda, Sonia; Jain, Rohit

    2014-01-01

    Objective: Root surfaces of periodontitis-affected teeth are hypermineralized and contaminated with cytotoxic and other biologically active substances. To achieve complete decontamination of the tooth surfaces, various methods including root conditioning following scaling and root planning are present. The main objective of this article is to throw light on the different root conditioning agents used and the goals accomplished by root conditioning in the field of periodontology. Materials and...

  4. Growth temperature affects sensory quality and contents of glucosinolates, vitamin C and sugars in swede roots (Brassica napus L. ssp. rapifera Metzg.).

    Science.gov (United States)

    Johansen, Tor J; Hagen, Sidsel F; Bengtsson, Gunnar B; Mølmann, Jørgen A B

    2016-04-01

    Swede is a root vegetable grown under a range of growth conditions that may influence the product quality. The objective of this controlled climate study was to find the effect of growth temperature on sensory quality and the contents of glucosinolates, vitamin C and soluble sugars. High temperature (21 °C) enhanced the intensities of sensory attributes like pungent odour, bitterness, astringency and fibrousness, while low temperature (9 °C) was associated with acidic odour, sweet taste, crispiness and juiciness. Ten glucosinolates were quantified, with progoitrin as the dominant component followed by glucoberteroin, both with highest content at 21 °C. Vitamin C also had its highest content at 21 °C, while the total sugar content was lowest at this temperature. In conclusion, the study demonstrated clear effects of growth temperature on sensory quality and some chemical properties of swede and indicated a good eating quality of swedes grown at low temperatures.

  5. Melting of sodium clusters

    CERN Document Server

    Reyes-Nava, J A; Beltran, M R; Michaelian, K

    2002-01-01

    Thermal stability properties and the melting-like transition of Na_n, n=13-147, clusters are studied through microcanonical molecular dynamics simulations. The metallic bonding in the sodium clusters is mimicked by a many-body Gupta potential based on the second moment approximation of a tight-binding Hamiltonian. The characteristics of the solid-to-liquid transition in the sodium clusters are analyzed by calculating physical quantities like caloric curves, heat capacities, and root-mean-square bond length fluctuations using simulation times of several nanoseconds. Distinct melting mechanisms are obtained for the sodium clusters in the size range investigated. The calculated melting temperatures show an irregular variation with the cluster size, in qualitative agreement with recent experimental results. However, the calculated melting point for the Na_55 cluster is about 40 % lower than the experimental value.

  6. Mineral nutrition and adventitious rooting in microcuttings of Eucalyptus globulus.

    Science.gov (United States)

    Schwambach, Joséli; Fadanelli, Cristina; Fett-Neto, Arthur G

    2005-04-01

    We characterized the adventitious rooting response of Eucalyptus globulus Labill. to various concentrations of calcium, nitrogen, phosphorus, iron, manganese, zinc, boron and copper. The parameters analyzed were percent rooting, root number, root length and mean rooting time. Root number and root length were significantly affected by mineral nutrition, whereas mean rooting time and rooting percentage seemed to be closely related to auxin availability. Root number was affected by calcium, nitrogen source and zinc, whereas root length was influenced by concentrations of phosphorus, iron and manganese, and by nitrogen source. Based on these results, we evaluated various combinations of several concentrations of these minerals in each rooting phase. Cuttings that were rooted in an optimized mineral nutrient medium and acclimatized to ex-vitro conditions for two months showed significantly higher survival after transplanting and drought stress than cuttings rooted in basal medium and treated in the same way.

  7. Determination of the lipophilicity of Salvia miltiorrhiza Radix et Rhizoma (danshen root) ingredients by microemulsion liquid chromatography: optimization using cluster analysis and a linear solvation energy relationship-based method.

    Science.gov (United States)

    Li, Liangxing; Yang, Jianrui; Huang, Hongzhang; Xu, Liyuan; Gao, Chongkai; Li, Ning

    2016-07-01

    We evaluated 26 microemulsion liquid chromatography (MELC) systems for their potential as high-throughput screening platforms capable of modeling the partitioning behaviors of drug compounds in an n-octanol-water system, and for predicting the lipophilicity of those compounds (i.e. logP values). The MELC systems were compared by cluster analysis and a linear solvation energy relationship (LSER)-based method, and the optimal system was identified by comparing their Euclidean distances with the LSER coefficients. The most effective MELC system had a mobile phase consisting of 6.0% (w/w) Brij35 (a detergent), 6.6% (w/w) butanol, 0.8% (w/w) cyclohexane, 86.6% (w/w) buffer solution and 8 mm cetyltrimethyl ammonium bromide. The reliability of the established platform was confirmed by the agreement between the experimental data and the predicted values. The logP values of the ingredients of danshen root (Salvia miltiorrhiza Radix et Rhizoma) were then predicted. Copyright © 2015 John Wiley & Sons, Ltd. PMID:26490541

  8. Ectopic expression of foxtail millet zip-like gene,SiPf40,in transgenic rice plants causes a pleiotropic phenotype affecting tillering,vascular distribution and root development

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    Plant architecture determines grain production in rice(Oryza sativa) and is affected by important agronomic traits such as tillering,plant height,and panicle morphology.Many key genes involved in controlling the initiation and outgrowth of axillary buds,the elongation of stems,and the architecture of inflorescences have been isolated and analyzed.Previous studies have shown that SiPf40,which was identified from a foxtail millet(Setaria italica) immature seed cDNA library,causes extra branches and tillers in SiPf40-transgenic tobacco and foxtail millet,respectively.To reconfirm its function,we generated transgenic rice plants overexpressing SiPf40 under the control of the ubiquitin promoter.SiPf40-overexpressing transgenic plants have a greater tillering number and a wider tiller angle than wild-type plants.Their root architecture is modified by the promotion of lateral root development,and the distribution of xylem and phloem in the vascular bundle is affected.Analysis of hormone levels showed that the ratios of indole-3-acetic acid/zeatin(IAA/ZR) and IAA/gibberellic acid(IAA/GA) decreased in SiPf40-transgenic plants compared with wild-type plants.These findings strongly suggest that SiPf40 plays an important role in plant architecture.

  9. Keberhasilan sambungan pada beberapa jenis batang atas dan famili batang bawah kakao (Theobroma cocoa L.. (Grafting performance of some scion clones and root-stock family on cocoa (Theobroma cocoa L.

    Directory of Open Access Journals (Sweden)

    Indah Anita Sari

    2012-08-01

    Full Text Available Differences in performance of grafting seedling were estimated from effect of using the root-stock and scion clones. This research aimed to study the differences of performance of some root-stock and scion clones on grafting seedling. The study used split plot design. First factor was root-stock consisted of ICS 60, Sca 6, Sca 12 and KW 165 and the second factor were 12 scions clones consisted of ICCRI 01, ICCRI 04, ICCRI 05, DR 2, Sulawesi 1, Sulawesi 2, KW 516, KW 514, KW 617, KW 570, KEE 2, and KW 604. There were three replication in each treatment and each replication consisted of 15 samples. Viability, lingkage diameter, ratio of root-stock and scion, hight of shoot, number of leaves and shoot were observed. The study showed that differences of root-stock just affected viability, lingkage diameter, and high of shoot. Scion clones factor affected to all of the characters. Their interaction caused the differences of all characters except of the number of shoot. Root-stock Sca 6 showed the lowest viability and number of the shoot, however root-stock KW 165 and ICS 60 showed the best performance to all parameters. The cluster analysis was done based on growth parameters and viability on lingkage distance of 15. There were three clusters; cluster 1 (KW 570, cluster 2 (ICCRI 04, ICCRI 05, Sulawesi 1, Sulawesi 2, KW 514, KW 165 and cluster 3 (ICCRI 01, DR 2, KW 516, KW 617, KW 604. Correlation analysis showed that main factor which affected the high viability root-stock diameter and diameter ratio of root-stock and scion were used.

  10. Assessment of the nonoperated root after apical surgery of the other root in mandibular molars

    DEFF Research Database (Denmark)

    Kraus, Riccardo D; von Arx, Thomas; Gfeller, David;

    2015-01-01

    INTRODUCTION: If a surgical approach is chosen to treat a multirooted tooth affected by persistent periapical pathosis, usually only the affected roots are operated on. The present study assessed the periapical status of the nonoperated root 5 years after apical surgery of the other root in mandi...

  11. Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants

    Institute of Scientific and Technical Information of China (English)

    Juan Zhang; Youliang Peng; Zejian Guo

    2008-01-01

    WRKY transcription factors have many regulatory roles in response to biotic and abiotic stresses. In this study, we isolated a rice WRKY gene (OsWRKY31) that is induced by the rice blast fungus Magnaporthe grisea and auxin. This gene encodes a polypeptide of 211 amino-acid residues and belongs to a subgroup of the rice WRKY gene family that probably originated after the divergence of monocot and dicot plants. OsWRKY31 was found to be localized to the nucleus of onion epidermis cells to transiently express OsWRKY31-eGFP fusion protein. Analysis of 0sWRKY31 and its mutants fused with a Cal4 DNA-binding domain indicated that OsWRKY31 has transactivation activity in yeast. Overexpression of the OsWRKY31 gene was found to enhance resistance against infection with M. grisea, and the transgenic lines exhibited reduced lateral root formation and elongation compared with wild-type and RNAi plants. The lines with overexpression showed constitutive expression of many defense-related genes, such as PBZ1 and OsSci2, as well as early auxin-response genes, such as OsIAA4 and OsCrll genes. Furthermore, the plants with overexpression were less sensitive to exogenously supplied IBA, NAA and 2,4-D at high concentrations, suggesting that overexpression of the OsWRKY31 gene might alter the auxin response or transport. These results also suggest that OsWRKY31 might be a common component in the signal transduction pathways of the auxin response and the defense response in rice.

  12. The Roots of Beowulf

    Science.gov (United States)

    Fischer, James R.

    2014-01-01

    The first Beowulf Linux commodity cluster was constructed at NASA's Goddard Space Flight Center in 1994 and its origins are a part of the folklore of high-end computing. In fact, the conditions within Goddard that brought the idea into being were shaped by rich historical roots, strategic pressures brought on by the ramp up of the Federal High-Performance Computing and Communications Program, growth of the open software movement, microprocessor performance trends, and the vision of key technologists. This multifaceted story is told here for the first time from the point of view of NASA project management.

  13. Ecological effect of plant root exudates and related affecting factors: A review%植物根系分泌物生态效应及其影响因素研究综述

    Institute of Scientific and Technical Information of China (English)

    罗永清; 赵学勇; 李美霞

    2012-01-01

    The formation of plant root exudates is a vital physiological phenomenon in the metabolic processes of plant, and an important link of material turnover in " plant-soil" system. To study the plant root exudates is of significance in understanding the matter and energy flow, carbon and nitrogen balance, and improvement of primary production in terrestrial ecosystems. This paper reviewed the ecological effect of plant root exudates, such as the effect on plant physiological processes, soil microorganisms, soil matter turnover, and degradation of soil organic contaminants, and summarized the related affecting factors, including soil heavy metals and nutrient contents, soil moisture, light, and heat conditions, plant gene type, soil microorganisms, and input of exogenous organic contaminants. Based on the present research status of plant root exudates, the future research directions about the objects, methods, and effect assessment were prospected.%植物根系分泌物的形成是植物体代谢过程中重要的生理现象,为“植物-土壤”体系物质周转的重要环节.研究植物根系分泌物对于了解陆地生态系统质能过程、碳氮收支平衡及提高生态系统的初级生产具有重要意义.本文从植物根系分泌物对植物生理性状、土壤微生物、土壤物质周转及有机污染物降解影响等4个方面对植物根系分泌物的生态效应进行综述,并从重金属含量、营养元素水平、土壤水分和光热条件、物种基因型、土壤微生物状况和外源有机污染物添加的角度综述了影响植物根系分泌物的因素,旨在对植物根系分泌物的生态效应和影响因素进行总结,并根据目前的研究现状,从研究对象、研究方法和效应评估方面进行了展望.

  14. Root canal

    Science.gov (United States)

    Endodontic therapy ... the root of a tooth. Generally, there is pain and swelling in the area. The infection can ... You may have some pain or soreness after the procedure. An over-the-counter anti-inflammatory drug, such as ibuprofen or naproxen, can help relieve ...

  15. A statistical approach to root system classification.

    Directory of Open Access Journals (Sweden)

    Gernot eBodner

    2013-08-01

    Full Text Available Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for plant functional type identification in ecology can be applied to the classification of root systems. We demonstrate that combining principal component and cluster analysis yields a meaningful classification of rooting types based on morphological traits. The classification method presented is based on a data-defined statistical procedure without a priori decision on the classifiers. Biplot inspection is used to determine key traits and to ensure stability in cluster based grouping. The classification method is exemplified with simulated root architectures and morphological field data. Simulated root architectures showed that morphological attributes with spatial distribution parameters capture most distinctive features within root system diversity. While developmental type (tap vs. shoot-borne systems is a strong, but coarse classifier, topological traits provide the most detailed differentiation among distinctive groups. Adequacy of commonly available morphologic traits for classification is supported by field data. Three rooting types emerged from measured data, distinguished by diameter/weight, density and spatial distribution respectively. Similarity of root systems within distinctive groups was the joint result of phylogenetic relation and environmental as well as human selection pressure. We concluded that the data-define classification is appropriate for integration of knowledge obtained with different root measurement methods and at various scales. Currently root morphology is the most promising basis for classification due to widely used common measurement protocols. To capture details of root diversity efforts in architectural measurement

  16. Locally Finite Root Supersystems

    OpenAIRE

    YOUSOFZADEH, Malihe

    2013-01-01

    We introduce the notion of locally finite root supersystems as a generalization of both locally finite root systems and generalized root systems. We classify irreducible locally finite root supersystems.

  17. Using an innovative multiple regression procedure in a cancer population (Part II: fever, depressive affect, and mobility problems clarify an influential symptom pair (pain–fatigue/weakness and cluster (pain–fatigue/weakness–sleep problems

    Directory of Open Access Journals (Sweden)

    Francoeur RB

    2014-12-01

    Full Text Available Richard B Francoeur1,2 1School of Social Work and the Center for Health Innovation, Adelphi University, Garden City, NY, USA; 2Center for the Psychosocial Study of Health and Illness, Columbia University, New York, NY, USA Background: Most patients with advanced cancer experience symptom pairs or clusters among pain, fatigue, and insomnia. However, only combinations where symptoms are mutually influential hold potential for identifying patient subgroups at greater risk, and in some contexts, interventions with "cross-over" (multisymptom effects. Improved methods to detect and interpret interactions among symptoms, signs, or biomarkers are needed to reveal these influential pairs and clusters. I recently created sequential residual centering (SRC to reduce multicollinearity in moderated regression, which enhances sensitivity to detect these interactions. Methods: I applied SRC to moderated regressions of single-item symptoms that interact to predict outcomes from 268 palliative radiation outpatients. I investigated: 1 the hypothesis that the interaction, pain × fatigue/weakness × sleep problems, predicts depressive affect only when fever presents, and 2 an exploratory analysis, when fever is absent, that the interaction, pain × fatigue/weakness × sleep problems × depressive affect, predicts mobility problems. In the fever context, three-way interactions (and derivative terms of the four symptoms (pain, fatigue/weakness, fever, sleep problems are tested individually and simultaneously; in the non-fever context, a single four-way interaction (and derivative terms is tested. Results: Fever interacts separately with fatigue/weakness and sleep problems; these comoderators each magnify the pain–depressive affect relationship along the upper or full range of pain values. In non-fever contexts, fatigue/weakness, sleep problems, and depressive affect comagnify the relationship between pain and mobility problems. Conclusion: Different mechanisms

  18. Cold temperature delays wound healing in postharvest sugarbeet roots

    Science.gov (United States)

    Storage temperature affects the rate and extent of wound-healing in a number of root and tuber crops. The effect of storage temperature on wound-healing in sugarbeet (Beta vulgaris L.) roots, however, is largely unknown. Wound-healing of sugarbeet roots was investigated using surface-abraded roots s...

  19. New theories of root growth modelling

    Science.gov (United States)

    Landl, Magdalena; Schnepf, Andrea; Vanderborght, Jan; Huber, Katrin; Javaux, Mathieu; Bengough, A. Glyn; Vereecken, Harry

    2016-04-01

    In dynamic root architecture models, root growth is represented by moving root tips whose line trajectory results in the creation of new root segments. Typically, the direction of root growth is calculated as the vector sum of various direction-affecting components. However, in our simulations this did not reproduce experimental observations of root growth in structured soil. We therefore developed a new approach to predict the root growth direction. In this approach we distinguish between, firstly, driving forces for root growth, i.e. the force exerted by the root which points in the direction of the previous root segment and gravitropism, and, secondly, the soil mechanical resistance to root growth or penetration resistance. The latter can be anisotropic, i.e. depending on the direction of growth, which leads to a difference between the direction of the driving force and the direction of the root tip movement. Anisotropy of penetration resistance can be caused either by microscale differences in soil structure or by macroscale features, including macropores. Anisotropy at the microscale is neglected in our model. To allow for this, we include a normally distributed random deflection angle α to the force which points in the direction of the previous root segment with zero mean and a standard deviation σ. The standard deviation σ is scaled, so that the deflection from the original root tip location does not depend on the spatial resolution of the root system model. Similarly to the water flow equation, the direction of the root tip movement corresponds to the water flux vector while the driving forces are related to the water potential gradient. The analogue of the hydraulic conductivity tensor is the root penetrability tensor. It is determined by the inverse of soil penetration resistance and describes the ease with which a root can penetrate the soil. By adapting the three dimensional soil and root water uptake model R-SWMS (Javaux et al., 2008) in this way

  20. Programming with MPI on clusters

    International Nuclear Information System (INIS)

    The authors discuss the current state of development for the key aspects of MPI programming on clusters. These aspects are the evolution of the MPI Standard itself, developments in cluster hardware and system software that directly affect MPI implementations, and supporting software that facilitates the use of MPI on scalable clusters. In each case we give a brief background and summarize the current status

  1. Haplotypes in the APOA1-C3-A4-A5 gene cluster affect plasma lipids in both humans and baboons

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Qian-fei; Liu, Xin; O' Connell, Jeff; Peng, Ze; Krauss, Ronald M.; Rainwater, David L.; VandeBerg, John L.; Rubin, Edward M.; Cheng, Jan-Fang; Pennacchio, Len A.

    2003-09-15

    Genetic studies in non-human primates serve as a potential strategy for identifying genomic intervals where polymorphisms impact upon human disease-related phenotypes. It remains unclear, however, whether independently arising polymorphisms in orthologous regions of non-human primates leads to similar variation in a quantitative trait found in both species. To explore this paradigm, we studied a baboon apolipoprotein gene cluster (APOA1/C3/A4/A5) for which the human gene orthologs have well established roles in influencing plasma HDL-cholesterol and triglyceride concentrations. Our extensive polymorphism analysis of this 68 kb gene cluster in 96 pedigreed baboons identified several haplotype blocks each with limited diversity, consistent with haplotype findings in humans. To determine whether baboons, like humans, also have particular haplotypes associated with lipid phenotypes, we genotyped 634 well characterized baboons using 16 haplotype tagging SNPs. Genetic analysis of single SNPs, as well as haplotypes, revealed an association of APOA5 and APOC3 variants with HDL cholesterol and triglyceride concentrations, respectively. Thus, independent variation in orthologous genomic intervals does associate with similar quantitative lipid traits in both species, supporting the possibility of uncovering human QTL genes in a highly controlled non-human primate model.

  2. Weighted Clustering

    DEFF Research Database (Denmark)

    Ackerman, Margareta; Ben-David, Shai; Branzei, Simina;

    2012-01-01

    We investigate a natural generalization of the classical clustering problem, considering clustering tasks in which different instances may have different weights.We conduct the first extensive theoretical analysis on the influence of weighted data on standard clustering algorithms in both the...... partitional and hierarchical settings, characterizing the conditions under which algorithms react to weights. Extending a recent framework for clustering algorithm selection, we propose intuitive properties that would allow users to choose between clustering algorithms in the weighted setting and classify...

  3. Afrokoko Roots

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    Give us a little background information about Afrokoko Roots.How long have you been performing together?It's an international Afrobeat outfit that I founded in Beijing three years ago.I founded it in order to show Chinese people that Africa is beyond what they see and hear on TV.For the purpose of cultural exchange,I hope it can help the Chinese learn about African culture,music,fashion,history and much more.Our band features two dancers,two backup singers,two percussionists,four brass players,a keyboard player,a guitar player and a drummer- and me as the lead vocal,drummer and dancer,which makes for live performances that are equally exciting sonically as they are visually.We have been traveling around,and so far,we have toured and performed in many Chinese cities such as Dalian (Liaoning Province),Hohhot (Inner Mongolia Autonomous Region) and Haikou (Hainan Province).

  4. Isotopic clusters

    International Nuclear Information System (INIS)

    Spectra of isotopically mixed clusters (dimers of SF6) are calculated as well as transition frequencies. The result leads to speculations about the suitability of the laser-cluster fragmentation process for isotope separation. (Auth.)

  5. Glucose and Auxin Signaling Interaction in Controlling Arabidopsis thaliana Seedlings Root Growth and Development

    OpenAIRE

    Mishra, Bhuwaneshwar S.; Manjul Singh; Priyanka Aggrawal; Ashverya Laxmi

    2009-01-01

    BACKGROUND: Plant root growth and development is highly plastic and can adapt to many environmental conditions. Sugar signaling has been shown to affect root growth and development by interacting with phytohormones such as gibberellins, cytokinin and abscisic acid. Auxin signaling and transport has been earlier shown to be controlling plant root length, number of lateral roots, root hair and root growth direction. PRINCIPAL FINDINGS: Increasing concentration of glucose not only controls root ...

  6. Meaningful Clusters

    Energy Technology Data Exchange (ETDEWEB)

    Sanfilippo, Antonio P.; Calapristi, Augustin J.; Crow, Vernon L.; Hetzler, Elizabeth G.; Turner, Alan E.

    2004-05-26

    We present an approach to the disambiguation of cluster labels that capitalizes on the notion of semantic similarity to assign WordNet senses to cluster labels. The approach provides interesting insights on how document clustering can provide the basis for developing a novel approach to word sense disambiguation.

  7. Quantum Dilogarithm Identities at Root of Unity

    CERN Document Server

    Ip, Ivan Chi-Ho

    2014-01-01

    We study the root of unity degeneration of cluster algebras and quantum dilogarithm identities. We prove identities for the cyclic dilogarithm associated with a mutation sequence of a quiver, and as a consequence new identities for the non-compact quantum dilogarithm at $b=1$.

  8. D-Root: a system for cultivating plants with the roots in darkness or under different light conditions.

    Science.gov (United States)

    Silva-Navas, Javier; Moreno-Risueno, Miguel A; Manzano, Concepción; Pallero-Baena, Mercedes; Navarro-Neila, Sara; Téllez-Robledo, Bárbara; Garcia-Mina, Jose M; Baigorri, Roberto; Gallego, Francisco Javier; del Pozo, Juan C

    2015-10-01

    In nature roots grow in the dark and away from light (negative phototropism). However, most current research in root biology has been carried out with the root system grown in the presence of light. Here, we have engineered a device, called Dark-Root (D-Root), to grow plants in vitro with the aerial part exposed to the normal light/dark photoperiod while the roots are in the dark or exposed to specific wavelengths or light intensities. D-Root provides an efficient system for cultivating a large number of seedlings and easily characterizing root architecture in the dark. At the morphological level, root illumination shortens root length and promotes early emergence of lateral roots, therefore inducing expansion of the root system. Surprisingly, root illumination also affects shoot development, including flowering time. Our analyses also show that root illumination alters the proper response to hormones or abiotic stress (e.g. salt or osmotic stress) and nutrient starvation, enhancing inhibition of root growth. In conclusion, D-Root provides a growing system closer to the natural one for assaying Arabidopsis plants, and therefore its use will contribute to a better understanding of the mechanisms involved in root development, hormonal signaling and stress responses.

  9. Relationships between root respiration rate and root morphology, chemistry and anatomy in Larix gmelinii and Fraxinus mandshurica.

    Science.gov (United States)

    Jia, Shuxia; McLaughlin, Neil B; Gu, Jiacun; Li, Xingpeng; Wang, Zhengquan

    2013-06-01

    changes of tissue N concentration and anatomical structure along root branch orders in both tree species, which provide deeper understanding in the mechanism of how root traits affect root respiration in woody plants.

  10. Comparative Transcriptomic Analysis of Salt Adaptation in Roots of Contrasting Medicago truncatula Genotypes

    Institute of Scientific and Technical Information of China (English)

    Ons Zahaf; Anouck Diet; Mounawer Badri; Ana Zabalza; Esther M.González; Hervé Delacroix; Véronique Gruber; Florian Frugier; Martin Crespi; Sandrine Blanchet; Axel de Zélicourt; Beno(i)t Alunni; Julie Plet; Carole Laffont; Laura de Lorenzo; Sandrine Imbeaud; Jean-Laurent Ichanté

    2012-01-01

    Evolutionary diversity can be driven by the interaction of plants with different environments.Molecular bases involved in ecological adaptations to abiotic constraints can be explored using genomic tools.Legumes are major crops worldwide and soil salinity is a main stress affecting yield in these plants.We analyzed in the Medicago truncatula legume the root transcriptome of two genotypes having contrasting responses to salt stress:TN1.11,sampled in a salty Tunisian soil,and the reference Jemalong A17 genotype.TN1.11 plants show increased root growth under salt stress as well as a differential accumulation of sodium ions when compared to A17.Transcriptomic analysis revealed specific gene clusters preferentially regulated by salt in root apices of TN1.11,notably those related to the auxin pathway and to changes in histone variant isoforms.Many genes encoding transcription factors (TFs) were also differentially regulated between the two genotypes in response to salt.Among those selected for functional studies,overexpression in roots of the A17 genotype of the bHLH-type TF most differentially regulated between genotypes improved significantly root growth under salt stress.Despite the global complexity of the differential transcriptional responses,we propose that an increase in this bHLH TF expression may be linked to the adaptation of M.truncatula to saline soil environments.

  11. Research Progress in the Affective Factors of Sugar Beet Root Yield and Sugar Content%影响甜菜块根产量及含糖率因素的研究进展

    Institute of Scientific and Technical Information of China (English)

    段娜; 刘雪; 于超; 徐军; 刘芳

    2014-01-01

    Sugar beet is one of the important raw materials in the sugar industry,In our country, low per unit area yield and low sugar content become important restrict factors in the production of sugar beet. Four aspects of the relationship between root weight and sugar content, the impact of varieties on root growth and sugar content, the relationship between photosynthetic characteristics and growth of root and sugar content, the impact of plant growth regulators on root and sugar content were summarized in this article. The idea would be provided for researching root yield and sugar content in the future.%甜菜是制糖工业的重要原料之一,单产和含糖率低成为制约中国甜菜生产的重要因素。文章对甜菜根重与含糖率相关关系、品种对甜菜块根增长和含糖率的影响、光合特性与甜菜块根和含糖增长的关系、植物生长调节剂对甜菜块根和含糖率影响四方面进行了概述,为今后研究甜菜块根产量及含糖率提供一些思路。

  12. Variations of fine root diameter with root order in Manchurian ash and Dahurian larch plantations

    Institute of Scientific and Technical Information of China (English)

    WANG Xiangrong; WANG Zhengquan; HAN Youzhi; GU Jiacun; GUO Dali; MEI Li

    2007-01-01

    Fine root lifespan and turnover play an important role in carbon allocation and nutrient cycling in forest ecosystems.Fine roots are typically defined as less than 1 or 2mm in diameter.However,when categorizing roots by this diameter size,the position of an individual root on the complex lateral branching pattern has often been ignored,and our knowledge about relationships between branching order and root function thus remains limited.More recently,studies on root survivals found that longevity was remarkably different in the same branching level due to diameter variations.The objectives of this study were:(1) To examine variations of fine root diameter from the first-to fifth-orders in Fraxinus mandshurica Rupr and Larix gmelinii Rupr roots;and (2) To reveal how the season,soil nutrient,and water availability affect root diameter in different branch order in two species.This study was conducted at Maoershan Forest Research Station (45°21'-45°25'N,127°30'-127°34'E) owned by Northeast Forestry University in Harbin,northeast China.Both F.mandshurica and L.gmelinii were planted in 1986.In each plantation,fine roots of two species by sampling up to five fine root branch orders three times during the 2003 growing season from two soil depths (i.e.,0-10 and 10-20 cm)were obtained.The results showed that average diameters of fine roots were significantly different among the five branch orders.The first-order had the thinner roots and the fifth order had the thickest roots,the diameter increasing regularly with the ascending branch orders in both species.If the diameter of fine roots was defined as being smaller than 0.5 mm,the first three orders ofF.mandshurica roots and the first two orders of L.gmelinii roots would be included in the fine root population.The diameter ranges of the fine roots from first-order to fifth-order were 0.15-0.58,0.18-0.70,0.26-1.05,0.36-1.43,and 0.71-2.96 mm for F.mandshurica,and 0.17-0.76,0.23-1.02,0.26-1.10,0.38-1.77,and 0.84-2.80 mm for L

  13. Root discrimination of closely related crop and weed species using FT MIR-ATR spectroscopy.

    Science.gov (United States)

    Meinen, Catharina; Rauber, Rolf

    2015-01-01

    Root discrimination of species is a pre-condition for studying belowground competition processes between crop and weed species. In this experiment, we tested Fourier transform mid-infrared (FT MIR)-attenuated total reflection (ATR) spectroscopy to discriminate roots of closely related crop and weed species grown in the greenhouse: maize/barnyard grass, barley/wild oat, wheat/blackgrass (Poaceae), and sugar beet/common lambsquarters (Chenopodiaceae). Fresh (moist) and dried root segments as well as ground roots were analyzed by FT MIR-ATR spectroscopy. Root absorption spectra showed species specific peak distribution and peak height. A clear separation according to species was not possible with fresh root segments. Dried root segments (including root basis, middle section, and root tip) of maize/barnyard grass and sugar beet/common lambsquarters formed completely separated species clusters. Wheat and blackgrass separated in species specific clusters when root tips were removed from cluster analysis. A clear separation of dried root segments according to species was not possible in the case of barley and wild oat. Cluster analyses of ground roots revealed a 100% separation of all tested crop and weed species combinations. Spectra grouped in Poaceae and Chenopodiaceae clusters. Within the Poaceae cluster, C3 and C4 species differed significantly in heterogeneity. Thus, root spectra reflected the degree of kinship. To quantify species proportion in root mixtures, a two- and a three-species model for species quantification in root mixtures of maize, barnyard grass, and wild oat was calculated. The models showed low standard errors of prediction (RMSEP) and high residual predictive deviation values in an external test set validation. Hence, FT MIR-ATR spectroscopy seems to be a promising tool for root research even between closely related plant species. PMID:26483799

  14. Root discrimination of closely related crop and weed species using FT MIR-ATR spectroscopy

    Directory of Open Access Journals (Sweden)

    Catharina eMeinen

    2015-09-01

    Full Text Available Root discrimination of species is a pre-condition for studying belowground competition processes between crop and weed species. In this experiment, we tested Fourier transform mid-infrared (FT MIR-attenuated total reflection (ATR spectroscopy to discriminate roots of closely related crop and weed species grown in the greenhouse: maize/barnyard grass, barley/wild oat, wheat/blackgrass (Poaceae, and sugar beet/common lambsquarters (Chenopodiaceae. Fresh (moist and dried root segments as well as ground roots were analyzed by FT MIR-ATR spectroscopy. Root absorption spectra showed species specific peak distribution and peak height. A clear separation according to species was not possible with fresh root segments. Dried root segments (including root basis, middle section and root tip of maize/barnyard grass and sugar beet/common lambsquarters formed completely separated species clusters. Wheat and blackgrass separated in species specific clusters when root tips were removed from cluster analysis. A clear separation of dried root segments according to species was not possible in the case of barley and wild oat. Cluster analyses of ground roots revealed a 100 % separation of all tested crop and weed species combinations. Spectra grouped in Poaceae and Chenopodiaceae clusters. Within the Poaceae cluster, C3 and C4 species differed significantly in heterogeneity. Thus, root spectra reflected the degree of kinship. To quantify species proportion in root mixtures, a two- and a three-species model for species quantification in root mixtures of maize, barnyard grass, and wild oat was calculated. The models showed low standard errors of prediction (RMSEP and high residual predictive deviation (RPD values in an external test set validation. Hence, FT MIR-ATR spectroscopy seems to be a promising tool for root research even between closely related plant species.

  15. Unit roots, nonlinearities and structural breaks

    DEFF Research Database (Denmark)

    Haldrup, Niels; Kruse, Robinson; Teräsvirta, Timo;

    One of the most influential research fields in econometrics over the past decades concerns unit root testing in economic time series. In macro-economics much of the interest in the area originate from the fact that when unit roots are present, then shocks to the time series processes have a...... persistent effect with resulting policy implications. From a statistical perspective on the other hand, the presence of unit roots has dramatic implications for econometric model building, estimation, and inference in order to avoid the so-called spurious regression problem. The present paper provides a...... selective review of contributions to the field of unit root testing over the past three decades. We discuss the nature of stochastic and deterministic trend processes, including break processes, that are likely to affect unit root inference. A range of the most popular unit root tests are presented and...

  16. Root canal irrigants

    OpenAIRE

    Kandaswamy Deivanayagam; Venkateshbabu Nagendrababu

    2010-01-01

    Successful root canal therapy relies on the combination of proper instrumentation, irrigation, and obturation of the root canal. Of these three essential steps of root canal therapy, irrigation of the root canal is the most important determinant in the healing of the periapical tissues. The primary endodontic treatment goal must thus be to optimize root canal disinfection and to prevent reinfection. In this review of the literature, various irrigants and the interactions between irrigants are...

  17. Cluster Characteristics in a MIMO Indoor Propagation Environment

    DEFF Research Database (Denmark)

    Czink, Nicolai; Yin, Xuefeng; Ozcelik, Huseyin;

    2007-01-01

    , strong (obstructed-)line-of-sight clusters show Rician fading, corresponding to few dominant propagation paths, whereas most clusters exhibit Rayleigh fading, corresponding to many paths with approximately equal powers and uncorrelated phases. Root-mean-square cluster azimuth spreads (CASs) were...

  18. Data Clustering

    Science.gov (United States)

    Wagstaff, Kiri L.

    2012-03-01

    On obtaining a new data set, the researcher is immediately faced with the challenge of obtaining a high-level understanding from the observations. What does a typical item look like? What are the dominant trends? How many distinct groups are included in the data set, and how is each one characterized? Which observable values are common, and which rarely occur? Which items stand out as anomalies or outliers from the rest of the data? This challenge is exacerbated by the steady growth in data set size [11] as new instruments push into new frontiers of parameter space, via improvements in temporal, spatial, and spectral resolution, or by the desire to "fuse" observations from different modalities and instruments into a larger-picture understanding of the same underlying phenomenon. Data clustering algorithms provide a variety of solutions for this task. They can generate summaries, locate outliers, compress data, identify dense or sparse regions of feature space, and build data models. It is useful to note up front that "clusters" in this context refer to groups of items within some descriptive feature space, not (necessarily) to "galaxy clusters" which are dense regions in physical space. The goal of this chapter is to survey a variety of data clustering methods, with an eye toward their applicability to astronomical data analysis. In addition to improving the individual researcher’s understanding of a given data set, clustering has led directly to scientific advances, such as the discovery of new subclasses of stars [14] and gamma-ray bursts (GRBs) [38]. All clustering algorithms seek to identify groups within a data set that reflect some observed, quantifiable structure. Clustering is traditionally an unsupervised approach to data analysis, in the sense that it operates without any direct guidance about which items should be assigned to which clusters. There has been a recent trend in the clustering literature toward supporting semisupervised or constrained

  19. Differences in U root-to-shoot translocation between plant species explained by U distribution in roots.

    Science.gov (United States)

    Straczek, Anne; Duquene, Lise; Wegrzynek, Dariusz; Chinea-Cano, Ernesto; Wannijn, Jean; Navez, Jacques; Vandenhove, Hildegarde

    2010-03-01

    Accumulation and distribution of uranium in roots and shoots of four plants species differing in their cation exchange capacity of roots (CECR) was investigated. After exposure in hydroponics for seven days to 100 micromol U L(-1), distribution of uranium in roots was investigated through chemical extraction of roots. Higher U concentrations were measured in roots of dicots which showed a higher CECR than monocot species. Chemical extractions indicated that uranium is mostly located in the apoplasm of roots of monocots but that it is predominantly located in the symplasm of roots of dicots. Translocation of U to shoot was not significantly affected by the CECR or distribution of U between symplasm and apoplasm. Distribution of uranium in roots was investigated through chemical extraction of roots for all species. Additionally, longitudinal and radial distribution of U in roots of maize and Indian mustard, respectively showing the lowest and the highest translocation, was studied following X-ray fluorescence (XRF) analysis of specific root sections. Chemical analysis and XRF analysis of roots of maize and Indian mustard clearly indicated a higher longitudinal and radial transport of uranium in roots of Indian mustard than in roots of maize, where uranium mostly accumulated in root tips. These results showed that even if CECR could partly explain U accumulation in roots, other mechanisms like radial and longitudinal transport are implied in the translocation of U to the shoot. PMID:20080323

  20. Differences in U root-to-shoot translocation between plant species explained by U distribution in roots

    Energy Technology Data Exchange (ETDEWEB)

    Straczek, Anne; Duquene, Lise [Belgium Nuclear Research Centre (SCK.CEN), Biosphere Impact Studies, Boeretang 200, 2400 Mol (Belgium); Wegrzynek, Dariusz [IAEA, Seibersdorf Laboratories, A-2444 Seibersdorf (Austria); Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Al. Mickiewicza 30, 30-059 Krakow (Poland); Chinea-Cano, Ernesto [IAEA, Seibersdorf Laboratories, A-2444 Seibersdorf (Austria); Wannijn, Jean [Belgium Nuclear Research Centre (SCK.CEN), Biosphere Impact Studies, Boeretang 200, 2400 Mol (Belgium); Navez, Jacques [Royal Museum of Africa, Department of Geology, Leuvensesteenweg 13, 3080 Tervuren (Belgium); Vandenhove, Hildegarde, E-mail: hvandenh@sckcen.b [Belgium Nuclear Research Centre (SCK.CEN), Biosphere Impact Studies, Boeretang 200, 2400 Mol (Belgium)

    2010-03-15

    Accumulation and distribution of uranium in roots and shoots of four plants species differing in their cation exchange capacity of roots (CECR) was investigated. After exposure in hydroponics for seven days to 100 mumol U L{sup -1}, distribution of uranium in roots was investigated through chemical extraction of roots. Higher U concentrations were measured in roots of dicots which showed a higher CECR than monocot species. Chemical extractions indicated that uranium is mostly located in the apoplasm of roots of monocots but that it is predominantly located in the symplasm of roots of dicots. Translocation of U to shoot was not significantly affected by the CECR or distribution of U between symplasm and apoplasm. Distribution of uranium in roots was investigated through chemical extraction of roots for all species. Additionally, longitudinal and radial distribution of U in roots of maize and Indian mustard, respectively showing the lowest and the highest translocation, was studied following X-ray fluorescence (XRF) analysis of specific root sections. Chemical analysis and XRF analysis of roots of maize and Indian mustard clearly indicated a higher longitudinal and radial transport of uranium in roots of Indian mustard than in roots of maize, where uranium mostly accumulated in root tips. These results showed that even if CECR could partly explain U accumulation in roots, other mechanisms like radial and longitudinal transport are implied in the translocation of U to the shoot.

  1. Cluster Chemistry

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    @@ Cansisting of eight scientists from the State Key Laboratory of Physical Chemistry of Solid Surfaces and Xiamen University, this creative research group is devoted to the research of cluster chemistry and creation of nanomaterials.After three-year hard work, the group scored a series of encouraging progresses in synthesis of clusters with special structures, including novel fullerenes, fullerene-like metal cluster compounds as well as other related nanomaterials, and their properties study.

  2. Aluminium fluoride and magnesium, activators of heterotrimeric GTP-binding proteins, affect high-affinity binding of the fungal toxin fusicoccin to the fusicoccin-binding protein in oat root plasma membranes.

    NARCIS (Netherlands)

    de Boer, A.H.; Van der Molen, G.W.; Prins, H.B.A.; Korthout, H.A.A.J.; van der Hoeven, P.C.J.

    1994-01-01

    The fusicoccin-binding protein was solubilised from purified oat root plasma membranes. The solubilised protein retained full binding activity, provided that protease inhibitors were included. Sodium fluoride reduced the high-affinity [H-3]fusicoccin binding to almost zero in a concentration-depende

  3. Phosphorus Affected Organic Acid Exudation from Soybean Root%磷影响大豆根系分泌有机酸总量和不同根区有机酸量

    Institute of Scientific and Technical Information of China (English)

    苗淑杰; 乔云发; 刘晓冰

    2011-01-01

    采用营养液培养的方法,设置由无磷转化为供磷(0-50)和由供磷转换为无磷(50-0)2个处理,分析了磷转换处理对不同根区有机酸的影响.结果表明:大豆生长对磷素的需求非常迫切,50-0处理根系可溶性磷含量相对较高,而0-50处理地上部可溶性磷含量相对较高;50-0处理根系有机酸分泌量较0-50处理大,而且分泌量随着距离根尖越远越少,50-0处理根区分泌有机酸的变化比0-50处理平缓.%To study the effect of phosphorus on organic acid exudation of soybean root, the phosphorus level changed from 0 to 50 μM and 50 to 0 μM in nutrient solution was carried out. The low-molecular-weight organic acids in root exudates of soybean were determined by high performance liquid chromatography under nutrient solution culture. The dynamics of low-molecular-weight organic acids under different root region were investigated. The influence of P-deficiency on soluble phosphorus content was analyzed. The results showed that the soluble phosphorus content of root in 50-0 treatment was relative higher,while that of shoot in 0-50 treatment was relative higher. Otherwise, organic acid exudation from 50-0 treatment soybean root was larger than 0-50 treatment. The amount of organic acid exudation from soybean root was reduced as far away root tip. The trend of decrease in 50-0 treatment was more slowly than 0-50 treatment.

  4. Genotypic recognition and spatial responses by rice roots

    OpenAIRE

    Fang, Suqin; Clark, Randy T.; Zheng, Ying; Iyer-Pascuzzi, Anjali S.; Weitz, Joshua S.; Kochian, Leon V.; Edelsbrunner, Herbert; Liao, Hong; Benfey, Philip N.

    2013-01-01

    Root system growth and development is highly plastic and is influenced by the surrounding environment. Roots frequently grow in heterogeneous environments that include interactions from neighboring plants and physical impediments in the rhizosphere. To investigate how planting density and physical objects affect root system growth, we grew rice in a transparent gel system in close proximity with another plant or a physical object. Root systems were imaged and reconstructed in three dimensions...

  5. Tailoring and Scaling Energetic Aluminum Clusters into Cluster Assembled Materials

    Science.gov (United States)

    Smith, Jordan Cesar

    As matter decreases in size the importance of a single atom increases exponentially. The properties of clusters, molecules with less than 100 atoms, will change drastically with the addition or removal of a single atom. Clusters have been shown to have properties that mimic other elements and properties that are completely unique. Cluster assemblies could enable the tailoring of precise properties in materials, providing cheap replacements for expensive elements, or novel materials for new applications. Aluminum clusters show great potential use in many applications including energy and catalysis. This work is focused on gaining a better understanding of how geometry and electronic structure affect aluminum cluster reactivity and how useful clusters might be successfully assembled into materials. The effects of doping aluminum cluster ions with boron atoms are reported and show that the addition of a single boron atom usually stabilizes the cluster while adding more boron atoms results in a breaking of symmetry and destabilization. A new analytical technique, matrix isolation cavity ring-down spectroscopy (MICRDS) was developed to help bridge the gap between gas phase cluster studies and condensed phase cluster materials. Molecules are trapped in an inert matrix and studied using cavity ring-down spectroscopy. MICRDS has the potential to also combine clusters into small stable units that would maintain their advantageous gas phase properties.

  6. Fuzzy Clustering

    DEFF Research Database (Denmark)

    Berks, G.; Keyserlingk, Diedrich Graf von; Jantzen, Jan;

    2000-01-01

    -mean clustering is an easy and well improved tool, which has been applied in many medical fields. We used c-mean fuzzy clustering after feature extraction from an aphasia database. Factor analysis was applied on a correlation matrix of 26 symptoms of language disorders and led to five factors. The factors...

  7. Root Graded Lie Superalgebras

    OpenAIRE

    Yousofzadeh, Malihe

    2015-01-01

    We define root graded Lie superalgebras and study their connection with centerless cores of extended affine Lie superalgebras; our definition generalizes the known notions of root graded Lie superalgebras.

  8. Using Square Roots

    Science.gov (United States)

    Wilson, William Wynne

    1976-01-01

    This article describes techniques which enable the user of a comparatively simple calculator to perform calculations of cube roots, nth roots, trigonometric, and inverse trigonometric functions, logarithms, and exponentials. (DT)

  9. Why Frequency Matters for Unit Root Testing

    OpenAIRE

    Boswijk, H.P.; Klaassen, F.J.G.M.

    2005-01-01

    It is generally believed that for the power of unit root tests, only the time span and not the observation frequency matters. In this paper we show that the observation frequency does matter when the high-frequency data display fat tails and volatility clustering, as is typically the case for financial time series such as exchange rate returns. Our claim builds on recent work on unit root and cointegration testing based non-Gaussian likelihood functions. The essential idea is that such method...

  10. WHY ROOTING FAILS.

    Energy Technology Data Exchange (ETDEWEB)

    CREUTZ,M.

    2007-07-30

    I explore the origins of the unphysical predictions from rooted staggered fermion algorithms. Before rooting, the exact chiral symmetry of staggered fermions is a flavored symmetry among the four 'tastes.' The rooting procedure averages over tastes of different chiralities. This averaging forbids the appearance of the correct 't Hooft vertex for the target theory.

  11. The Root Canal Biofilm

    NARCIS (Netherlands)

    Sluis, van der L.W.M.; Boutsioukis, C.; Jiang, L.M.; Macedo, R.; Verhaagen, B.; Versluis, M.; Chávez de Paz, E.; Sedgley, C.M.; Kishen, A.

    2015-01-01

    The aims of root canal irrigation are the chemical dissolution or disruption and the mechanical detachment of pulp tissue, dentin debris and smear layer (instrumentation products), microorganisms (planktonic or biofilm), and their products from the root canal wall, their removal out of the root cana

  12. Root canal irrigation

    NARCIS (Netherlands)

    L. van der Sluis; C. Boutsioukis; L.M. Jiang; R. Macedo; B. Verhaagen; M. Versluis

    2015-01-01

    The aims of root canal irrigation are the chemical dissolution or disruption and the mechanical detachment of pulp tissue, dentin debris and smear layer (instrumentation products), microorganisms (planktonic or biofilm), and their products from the root canal wall, their removal out of the root cana

  13. Clinical management of infected root canal dentin.

    Science.gov (United States)

    Love, R M

    1996-08-01

    Several hundred different species of bacteria are present in the human intraoral environment. Bacterial penetration of root canal dentin occurs when bacteria invade the root canal system. These bacteria may constitute a reservoir from which root canal reinfection may occur during or after endodontic treatment. The learning objective of this article is to review endodontic microbiology, update readers on the role of bacteria in pulp and periapical disease, and discuss the principles of management of infected root canal dentin. Complete debridement, removal of microorganisms and affected dentin, and chemomechanical cleansing of the root canal are suggested as being the cornerstones of successful endodontic therapy, followed by intracanal medication to remove residual bacteria, when required.

  14. Effect of lead on root growth.

    Science.gov (United States)

    Fahr, Mouna; Laplaze, Laurent; Bendaou, Najib; Hocher, Valerie; Mzibri, Mohamed El; Bogusz, Didier; Smouni, Abdelaziz

    2013-01-01

    Lead (Pb) is one of the most widespread heavy metal contaminant in soils. It is highly toxic to living organisms. Pb has no biological function but can cause morphological, physiological, and biochemical dysfunctions in plants. Plants have developed a wide range of tolerance mechanisms that are activated in response to Pb exposure. Pb affects plants primarily through their root systems. Plant roots rapidly respond either (i) by the synthesis and deposition of callose, creating a barrier that stops Pb entering (ii) through the uptake of large amounts of Pb and its sequestration in the vacuole accompanied by changes in root growth and branching pattern or (iii) by its translocation to the aboveground parts of plant in the case of hyperaccumulators plants. Here we review the interactions of roots with the presence of Pb in the rhizosphere and the effect of Pb on the physiological and biochemical mechanisms of root development.

  15. Weighted Clustering

    CERN Document Server

    Ackerman, Margareta; Branzei, Simina; Loker, David

    2011-01-01

    In this paper we investigate clustering in the weighted setting, in which every data point is assigned a real valued weight. We conduct a theoretical analysis on the influence of weighted data on standard clustering algorithms in each of the partitional and hierarchical settings, characterising the precise conditions under which such algorithms react to weights, and classifying clustering methods into three broad categories: weight-responsive, weight-considering, and weight-robust. Our analysis raises several interesting questions and can be directly mapped to the classical unweighted setting.

  16. Cluster analysis

    CERN Document Server

    Everitt, Brian S; Leese, Morven; Stahl, Daniel

    2011-01-01

    Cluster analysis comprises a range of methods for classifying multivariate data into subgroups. By organizing multivariate data into such subgroups, clustering can help reveal the characteristics of any structure or patterns present. These techniques have proven useful in a wide range of areas such as medicine, psychology, market research and bioinformatics.This fifth edition of the highly successful Cluster Analysis includes coverage of the latest developments in the field and a new chapter dealing with finite mixture models for structured data.Real life examples are used throughout to demons

  17. Cluster editing

    DEFF Research Database (Denmark)

    Böcker, S.; Baumbach, Jan

    2013-01-01

    The Cluster Editing problem asks to transform a graph into a disjoint union of cliques using a minimum number of edge modifications. Although the problem has been proven NP-complete several times, it has nevertheless attracted much research both from the theoretical and the applied side. The...... algorithms for biological problems. © 2013 Springer-Verlag....... problem has been the inspiration for numerous algorithms in bioinformatics, aiming at clustering entities such as genes, proteins, phenotypes, or patients. In this paper, we review exact and heuristic methods that have been proposed for the Cluster Editing problem, and also applications of these...

  18. Crescimento aéreo e radicular da soja e de plantas de cobertura em camadas compactadas de solo Shoot and root growth of soybean and cover crops as affected by soil compaction

    Directory of Open Access Journals (Sweden)

    José Salvador Simoneti Foloni

    2006-02-01

    Full Text Available O cultivo de plantas de cobertura com sistema radicular vigoroso em rotação de culturas pode melhorar a qualidade física de solos compactados. O objetivo deste trabalho foi avaliar o crescimento aéreo e radicular da soja e de cinco espécies utilizadas como plantas de cobertura de verão (guandu, guandu anão, mucuna preta, labe labe e crotalária juncea, em solo submetido a três níveis de compactação em subsuperfíce. Utilizou-se um Nitossolo Vermelho argiloso em vasos montados com anéis de PVC sobrepostos, com diâmetro interno de 20 cm e altura de 50 cm. A camada compactada localizada de 20-30 cm de profundidade foi caracterizada pelas densidades do solo de 1,13, 1,34 e 1,56 g cm-3 e 0,26, 0,66 e 1,98 MPa de impedância mecânica, respectivamente. Aos 60 dias da emergência das plantas, determinaram-se as massas da matéria seca da parte aérea e das raízes, a densidade do comprimento radicular e o diâmetro médio radicular. Apesar de alterar a distribuição do sistema radicular ao longo do perfil do solo, o impedimento físico em subsuperfície não diminuiu a produção total de raízes da soja e dos adubos verdes, com exceção da crotalária juncea. A mucuna preta foi a leguminosa mais tolerante e a soja a mais sensível à compactação do solo. O sistema radicular da crotalária juncea apresentou potencial de formação de "bioporos" compatível ao da mucuna preta, apesar de ter sido relativamente mais sensível à compactação do solo. O diâmetro médio das raízes da soja e da crotalária juncea apresentou correlação significativa com o crescimento radicular dentro da camada de solo compactado.The cultivation of cover crops with vigorous root systems in crop rotation can improve the physical quality of compacted soils. The objective of this study was to evaluate shoot and root growth of soybean (Glycine max and five species used as summer cover crops (Cajanus cajan, Cajanus cajan var. small, Mucuna aterrima, Dolichos

  19. The Root Cap Determines Ethylene-Dependent Growth and Development in Maize Roots

    Institute of Scientific and Technical Information of China (English)

    Achim Hahn; Roman Zimmermann; Dierk Wanke; Klaus Harter; Hans G.Edelmann

    2008-01-01

    Besides providing protection against mechanical damage to the root tip,the root cap is involved in the perception and processing of diverse external and internal stimuli resulting in altered growth and development.The transduction of these stimuli includes hormonal signaling pathways such as those of auxin,ethylene and cytokinin.Here,we show that the root cap is essential for the ethylene-induced regulation of elongation growth and root hair formation in maize.Exogenously applied ethylene is no longer able to inhibit elongation growth when the root cap has been surgically removed prior to hormone treatment.Reconstitution of the cap positively correlates with the developing capacity of the roots to respond to ethylene again.In contrast,the removal of the root cap does not per se affect growth inhibition controlled by auxin and cytokinin.Furthermore,our semi-quantitative RT-PCR results support earlier findings that the maize root cap is a site of high gene expression activity with respect to sensing and responding to hormones such as ethylene.From these data,we propose a novel function of the root cap which is the establishment of competence to respond to ethylene in the distal zones of the root.

  20. Malformations of the tooth root in humans

    Directory of Open Access Journals (Sweden)

    Hans Ulrich eLuder

    2015-10-01

    Full Text Available The most common root malformations in humans arise from either developmental disorders of the root alone or disorders of radicular development as part of a general tooth dysplasia. The aim of this review is to relate the characteristics of these root malformations to potentially disrupted processes involved in radicular morphogenesis. Radicular morphogenesis proceeds under the control of Hertwig's epithelial root sheath (HERS which determines the number, length, and shape of the root, induces the formation of radicular dentin, and participates in the development of root cementum. Formation of HERS at the transition from crown to root development appears to be very insensitive to adverse effects, with the result that rootless teeth are extremely rare. In contrast, shortened roots as a consequence of impaired or prematurely halted apical growth of HERS constitute the most prevalent radicular dysplasia which occurs due to trauma and unknown reasons as well as in association with dentin disorders. While odontoblast differentiation inevitably stops when growth of HERS is arrested, it seems to be unaffected even in cases of severe dentin dysplasias such as regional odontodysplasia and dentin dysplasia type I. As a result radicular dentin formation is at least initiated and progresses for a limited time. The only condition affecting cementogenesis is hypophosphatasia which disrupts the formation of acellular cementum through an inhibition of mineralization. A process particularly susceptible to adverse effects appears to be the formation of the furcation in multirooted teeth. Impairment or disruption of this process entails taurodontism, single-rooted posterior teeth, and misshapen furcations. Thus even though many characteristics of human root malformations can be related to disorders of specific processes involved in radicular morphogenesis, precise inferences as to the pathogenesis of these dysplasias are hampered by the still limited knowledge on

  1. Effect of localized nitrogen availability to soybean half-root systems on photosynthate partitioning to roots and nodules

    International Nuclear Information System (INIS)

    Soybean (Glycine max [L.] Merr. cv Davis) was grown in a split-root growth system designed to maintain control of the root atmosphere. Two experiments were conducted to examine how 80% Ar:20%, O2 (Ar:O2) and air (Air) atmospheres affected N assimilation (NH4NO3 and N2 fixation) and the partitioning of photosynthate to roots and nodules. Application of NH4NO3 to nonnodulated half-root systems enhanced root growth and root respiration at the site of application. A second experiment applied Ar:O2 or air to the two sides of nodulated soybean half-root systems for 11 days in the following combinations: (a) Air to both sides (Air/Air); (b) Air to one side, Ar:O2 to the other (Air/Ar:O2), and (c) Ar:O2 to both sides (Ar:O2/Ar:O2). Results indicated that dry matter and current photosynthate (14C) were selectively partitioned to nodules and roots where N2 was available. Both root and nodule growth on the Air side of Air/Ar:O2 plants was significantly greater than the Ar:O2 side. The relative partitioning of carbon and current photosynthate between roots and nodules on a half-root system was also affected by N2 availability. The Ar:O2 sides partitioned relatively more current photosynthate to roots (57%) than nodules (43%), while N2-fixing root systems partitioned 36 and 64% of the carbon to roots and nodules, respectively. The Ar:O2 atmosphere decreased root and nodule respiration by 80% and nitrogenase activity by 85% compared to half-root systems in Air while specific nitrogenase activity in Ar:O2 was 50% of nodules supplied Air. Results indicated that nitrogen assimilation, whether from N2 fixation or inorganic sources, had a localized effect on root development

  2. Considerations on immunization anxiety-related reactions in clusters

    Directory of Open Access Journals (Sweden)

    Ricardo Palacios

    2014-11-01

    Full Text Available A cluster of adverse events following immunization (AEFI represents a stress test for an immunization program. The community can suspect on vaccine-related reaction leading to mistrust on the immunization program. An immunization anxiety-related reaction is one of the hypotheses to be tested and can be reasonably accepted when the vaccine-related and immunization error-related reactions are ruled out and no coincidental events can explain the cases. Immunization program approaches widely accepted to understand and respond to adverse events are root-cause analysis and systems analysis. Psychiatric cognitive frame will support the root-cause analysis assigning a causal relationship to individual temporary disorders of the affected vaccinees. Communication will focus on vaccine safety and absence of errors in the immunization program. Systems analysis addresses the whole context considering the fear spread as a systemic threat. Socio-psychological frame offers a broader opportunity to understand and respond to a specific community. Management is based on communication to change community belief in misperceptions of vaccine risks and support the idea of immunization as a causal factor, different from the vaccine. Communities can consider use of psychiatric labels, Mass Psychogenic Illness or Mass Hysteria, as an act of inconsiderateness. Labels like immunization anxiety-related reactions in clusters or collective immunization anxiety-related reactions are recommended to bridge the causal perception of the community with the result of the scientific investigation of the cases.

  3. Role of calcium in gravity perception of plant roots

    Science.gov (United States)

    Evans, Michael L.

    1986-01-01

    Calcium ions may play a key role in linking graviperception by the root cap to the asymmetric growth which occurs in the elongation zone of gravistimulated roots. Application of calcium-chelating agents to the root cap inhibits gravitropic curvature without affecting growth. Asymmetric application of calcium to one side of the root cap induces curvature toward the calcium source, and gravistimulation induces polar movement of applied (Ca-45)(2+) across the root cap toward the lower side. The action of calcium may be linked to auxin movement in roots since: (1) auxin transport inhibitors interfere both with gravitropic curvature and graviinduced polar calcium movement and (2) asymmetric application of calcium enhances auxin movement across the elongation zone of gravistimulated roots. Indirect evidence indicates that the calcium-modulated regulator protein, calmodulin, may be involved in either the transport or action of calcium in the gravitropic response mechanism of roots.

  4. Role of calcium in gravity perception of plant roots

    Science.gov (United States)

    Evans, Michael L.

    Calcium ions may play a key role in linking graviperception by the root cap to the asymmetric growth which occurs in the elongation zone of gravistimulated roots. Application of calcium-chelating agents to the root cap inhibits gravitropic curvature without affecting growth. Asymmetric application of calcium to one side of the root cap induces curvature toward the calcium source, and gravistimulation induces polar movement of applied 45Ca2+ across the root cap toward the lower side. The action of calcium may be linked to auxin movement in roots since 1) auxin transport inhibitors interfere both with gravitropic curvature and gravi-induced polar calcium movement and 2) asymmetric application of calcium enhances auxin movement across the elongation zone of gravistimulated roots. Indirect evidence indicates that the calcium-modulated regulator protein, calmodulin, may be involved in either the transport or action of calcium in the gravitropic response mechanism of roots.

  5. Pullout tests of root analogs and natural root bundles in soil: Experiments and modeling

    Science.gov (United States)

    Schwarz, M.; Cohen, D.; Or, D.

    2011-06-01

    Root-soil mechanical interactions are key to soil stability on steep hillslopes. Motivated by new advances and applications of the Root Bundle Model (RBM), we conducted a series of experiments in the laboratory and in the field to study the mechanical response of pulled roots. We systematically quantified the influence of different factors such as root geometry and configuration, soil type, and soil water content considering individual roots and root bundles. We developed a novel pullout apparatus for strain-controlled field and laboratory tests of up to 13 parallel roots measured individually and as a bundle. Results highlight the importance of root tortuosity and root branching points for prediction of individual root pullout behavior. Results also confirm the critical role of root diameter distribution for realistic prediction of global pullout behavior of a root bundle. Friction between root and soil matrix varied with soil type and water content and affected the force-displacement behavior. Friction in sand varied from 1 to 17 kPa, with low values obtained in wet sand at a confining pressure of 2 kPa and high values obtained in dry sand with 4.5 kPa confining pressure. In a silty soil matrix, friction ranged between 3 kPa under wet and low confining pressure (2 kPa) and 6 kPa in dry and higher confining pressure (4.5 kPa). Displacement at maximum pullout force increased with increasing root diameter and with tortuosity. Laboratory experiments were used to calibrate the RBM that was later validated using six field measurements with natural root bundles of Norway spruce (Picea abies L.). These tests demonstrate the progressive nature of root bundle failure under strain-controlled pullout force and provide new insights regarding force-displacement behavior of root reinforcement, highlighting the importance of considering displacement in slope stability models. Results show that the magnitude of maximum root pullout forces (1-5 kPa) are important for slope

  6. Functional reorganization of human motor cortex after unaffected side C7 nerve root transposition

    International Nuclear Information System (INIS)

    Objective: To assess the characteristics of neuronal activity in human motor cortex after the seventh cervical nerve root transposition of the unaffected side by using functional MRI (fMRI). Methods: Thirteen patients who accepted the seventh cervical nerve root transposition of the unaffected side, due to total brachial plexus traction injury diagnosed by manifestation and operation, were examined retrospectively by using fMRI. 10 patients were injured on the left side and 3 on the right side. According to functional recovery of the affected hand, all subjects can be divided into 2 groups. The patients of the first group could not move the affected hand voluntarily. The patients of the second group could move the affected hand self-determined. 12 healthy volunteer's were also involved in this study as control. The fMRI examinations were performed by using echo-planer BOLD sequence. Then the SPM 99 software was used for post-processing. Results: The neuronal activation induced by the movement of both unaffected and affected upper' limb was seen in the contralateral PMC in all patients; Neuronal activation in the ipsilateral PMC evoked by movement of the unaffected extremity was seen in 10 cases, and induced by movement of the affected limb was seen in 7 cases. In the first group, the sharp of clusters in the contralateral PMC resulted by movement of the unaffected extremity showed normal in 9 eases, the average size of clusters resulted by the unaffected hand was 3159 (voxel), and resulted by the unaffected shoulder was 1746(voxel). The sharp of clusters in the contralateral PMC resulted by the affected shoulder or hand were revealed enlargement in 6 cases of each. In the second group, 1 case showed neuronal activation induced by movement of the affected limb in the PMC in both sides of motor cortex, and 2 cases showed neuronal activation in the contralateral PMC. Conclusions: Peripheral nerve injury was able to cause changes of motor cortex in human brain

  7. Factors affecting "in vitro" plant development and root colonization of sweet potato by Glomus etunicatum Becker & Gerd Fatores que afetam o desenvolvimento da planta e a colonização radicular "in vitro", da batata doce por Glomus etunicatum Becker & Gerd.

    Directory of Open Access Journals (Sweden)

    Wellington Bressan

    2002-01-01

    Full Text Available Nutrients media (Murashige & Skoog, Hoagland & Arnon and White's media supplemented or not with sucrose and substrates (vermiculite, agar and natrosol were tested for their effects on plant development and root colonization of micropropagated sweet potato, cv. White Star, by Glomus etunicatum Becker & Gerdemann (isolate INVAM FL S329. Addition of sucrose (3% did not affect plant development. However, hyphal growth and root colonization were depressed. Contrasting responses to media nutrient concentration were observed for plant height, root colonization, and hyphal growth. The highest concentration of nutrients in Murashige & Skoog medium improved plant development, but this medium decreased hypha growth and inhibited root colonization. Plants growing in vermiculite substrate had higher (p£0.05 development and mycorrhizal root colonization than those growing in agar or natrosol. The results indicate that colonization of micropropagated sweet potato by arbuscular mycorrhizal fungi is affected by media composition and type of substrate.Os meios de Murashige e Skoog, Hoagland, Arnon e White, suplementados ou não com sacorose, e tendo como substratos vermiculita, ágar ou natrosol foram utilizados para avaliar seus efeitos sobre o desenvolvimento da batata doce, c.v. White Star, e sua colonização por Glomus etunicatum Becker & Gerd. (isolado INVAM FL S329. A adição de sacorose (3% ao meio não afetou o desenvolvimento da planta, porém reduziu o crescimento das hifas de G. etunicatum e a colonização das raízes. A concentração de nutrientes dos meios utilizados mostrou efeitos contrastantes entre altura da planta, crescimento das hifas e colonização das raízes por G. etunicatum. A alta concentração de nutrientes no meio Murashige e Skoog estimulou o crescimento das plantas, reduziu o desenvolvimento das hifas e inibiu a colonização das raízes pelo fungo micorrízico. Plantas desenvolvidas em vermiculita mostraram maior

  8. Clustering in bubbly liquids

    Science.gov (United States)

    Figueroa, Bernardo; Zenit, Roberto

    2004-11-01

    We are conducting experiments to determine the amount of clustering that occurs when small gas bubbles ascend in clean water. In particular, we are interested in flows for which the liquid motion around the bubbles can be described, with a certain degree of accuracy, using potential flow theory. This model is applicable for the case of bubbly liquids in which the Reynolds number is large and the Weber number is small. To clearly observe the formation of bubble clusters we propose the use of a Hele-Shaw-type channel. In this thin channel the bubbles cannot overlap in the depth direction, therefore the identification of bubble clusters cannot be misinterpreted. Direct video image analysis is performed to calculate the velocity and size of the bubbles, as well as the formation of clusters. Although the walls do affect the motion of the bubbles, the clustering phenomena does occur and has the same qualitative behavior as in fully three-dimensional flows. A series of preliminary measurements are presented. A brief discussion of our plans to perform PIV measurements to obtain the liquid velocity fields is also presented.

  9. Genetic association among root morphology, root quality and root yield in ashwagandha (Withania somnifera)

    OpenAIRE

    Kumar Ramesh R.; Reddy Anjaneya Prasanna L.; Subbaiah Chinna J.; Kumar Niranjana A.; Prasad Nagendra H.N.; Bhukya Balakishan

    2011-01-01

    Ashwagandha (Withania somnifera) is a dryland medicinal crop and roots are used as valuable drug in traditional systems of medicine. Morphological variants (morphotypes) and the parental populations were evaluated for root - morphometric, quality and yield traits to study genetic association among them. Root morphometric traits (root length, root diameter, number of secondary roots/ plant) and crude fiber content exhibited strong association among them and ...

  10. Effects of acid deposition on tree roots

    Energy Technology Data Exchange (ETDEWEB)

    Persson, H. [Swedish Univ. of Agricultural Sciences (Sweden). Dept. of Ecology and Environmental Research

    1995-12-31

    Large forest regions in SW Sweden have been exposed to high levels of acid deposition for many decades, causing soil acidification in forest soils. Historically, SO{sub 2} has been the major acidification agent, but lately nitrogen compounds increasingly have become important. The amount and chemical form of nitrogen strongly affects the pH in the rhizosphere and rhizoplane. Many forest stands show a positive growth response to increased nitrogen input, even in heavily N-loaded areas. Nitrogen fertilization experiments suggest that part of the increased forest production is caused by a translocation of biomass production from below-ground to above-ground parts. At the same time fine-root growth dynamics are strongly affected by the high N supply. Deficiencies of various nutrients (Mg,Ca,K,Mn and Zn) obtained from needle analyses have been reported from different Picea abies stands. In areas with more extensive acidification and nutrient leaching, a decline in tree vitality has been observed. Although deficiency symptoms in forest trees may be reflected in nitrogen/cation ratios in fine roots, few attempts have been made to explain forest damage symptoms from fine-root chemistry. Root damage is often described as a decline in the amount of living fine roots, an increase in the amount of dead versus live fine roots (a lower live/dead ratio) and an increasing amount of dead medium and coarse roots. The primary objectives of the present presentation were to analyse available data on the effects of high nitrogen and sulphur deposition on mineral nutrient balance in tree fine roots and to evaluate the risk of Al interference with cation uptake by roots

  11. Root canal irrigants

    Directory of Open Access Journals (Sweden)

    Kandaswamy Deivanayagam

    2010-01-01

    Full Text Available Successful root canal therapy relies on the combination of proper instrumentation, irrigation, and obturation of the root canal. Of these three essential steps of root canal therapy, irrigation of the root canal is the most important determinant in the healing of the periapical tissues. The primary endodontic treatment goal must thus be to optimize root canal disinfection and to prevent reinfection. In this review of the literature, various irrigants and the interactions between irrigants are discussed. We performed a Medline search for English-language papers published untill July 2010. The keywords used were ′root canal irrigants′ and ′endodontic irrigants.′ The reference lists of each article were manually checked for additional articles of relevance.

  12. Roots and routes

    DEFF Research Database (Denmark)

    Christensen, Ann-Dorte; Jensen, Sune Qvotrup

    2011-01-01

    arguing that there is a dynamic interplay between roots and routes in people's lives. The empirical point of departure is narratives about roots and routes by ethnic minorities settled in Aalborg East, an underprivileged neighbourhood in northern Denmark. One of the main findings is a gap between the...... somewhat paradoxical finding is that it appears to be more difficult for transnational migrants to maintain their roots in the country of origin when they go back than it was to establish new roots in the host country...

  13. Roots of Dehn twists

    OpenAIRE

    McCullough, Darryl; Rajeevsarathy, Kashyap

    2009-01-01

    D. Margalit and S. Schleimer found examples of roots of the Dehn twist about a nonseparating curve in a closed orientable surface, that is, homeomorphisms whose nth power is isotopic to the Dehn twist. Our main theorem gives elementary number-theoretic conditions that describe the values of n for which an nth root exists, given the genus of the surface. Among its applications, we show that n must be odd, that the Margalit-Schleimer roots achieve the maximum value of n among the roots for a gi...

  14. Phosphate-dependent root system architecture responses to salt stress

    KAUST Repository

    Kawa, Dorota

    2016-05-20

    Nutrient availability and salinity of the soil affect growth and development of plant roots. Here, we describe how phosphate availability affects root system architecture (RSA) of Arabidopsis and how phosphate levels modulate responses of the root to salt stress. Phosphate (Pi) starvation reduced main root length and increased the number of lateral roots of Arabidopsis Col-0 seedlings. In combination with salt, low Pi dampened the inhibiting effect of mild salt stress (75mM) on all measured RSA components. At higher NaCl concentrations, the Pi deprivation response prevailed over the salt stress only for lateral root elongation. The Pi deprivation response of lateral roots appeared to be oppositely affected by abscisic acid (ABA) signaling compared to the salt stress response. Natural variation in the response to the combination treatment of salt and Pi starvation within 330 Arabidopsis accessions could be grouped into four response patterns. When exposed to double stress, in general lateral roots prioritized responses to salt, while the effect on main root traits was additive. Interestingly, these patterns were not identical for all accessions studied and multiple strategies to integrate the signals from Pi deprivation and salinity were identified. By Genome Wide Association Mapping (GWAS) 13 genomic loci were identified as putative factors integrating responses to salt stress and Pi starvation. From our experiments, we conclude that Pi starvation interferes with salt responses mainly at the level of lateral roots and that large natural variation exists in the available genetic repertoire of accessions to handle the combination of stresses.

  15. Economic strategies of plant absorptive roots vary with root diameter

    Science.gov (United States)

    Kong, D. L.; Wang, J. J.; Kardol, P.; Wu, H. F.; Zeng, H.; Deng, X. B.; Deng, Y.

    2016-01-01

    Plant roots typically vary along a dominant ecological axis, the root economics spectrum, depicting a tradeoff between resource acquisition and conservation. For absorptive roots, which are mainly responsible for resource acquisition, we hypothesized that root economic strategies differ with increasing root diameter. To test this hypothesis, we used seven plant species (a fern, a conifer, and five angiosperms from south China) for which we separated absorptive roots into two categories: thin roots (thickness of root cortex plus epidermis perspective on our understanding of the root economics spectrum.

  16. Integration of root phenes for soil resource acquisition

    Directory of Open Access Journals (Sweden)

    Larry Matthew York

    2013-09-01

    Full Text Available Suboptimal availability of water and nutrients is a primary limitation to plant growth in terrestrial ecosystems. The acquisition of soil resources by plant roots is therefore an important component of plant fitness and agricultural productivity. Plant root systems comprise a set of phenes, or traits, that interact. Phenes are the units of the plant phenotype, and phene states represent the variation in form and function a particular phene may take. Root phenes can be classified as affecting resource acquisition or utilization, influencing acquisition through exploration or exploitation, and in being metabolically influential or neutral. These classifications determine how one phene will interact with another phene, whether through foraging mechanisms or metabolic economics. Phenes that influence one another through foraging mechanisms are likely to operate within a phene module, a group of interacting phenes, that may be co-selected. Examples of root phene interactions discussed are: 1 root hair length × root hair density, 2 lateral branching × root cortical aerenchyma, 3 adventitious root number × adventitious root respiration and basal root growth angle, 4 nodal root number × root cortical aerenchyma, and 5 basal root growth angle × root hair length and density. Progress in the study of phenes and phene interactions will be facilitated by employing simulation modeling and near-isophenic lines that allow the study of specific phenes and phene combinations within a common phenotypic background. Developing a robust understanding of the phenome at the organismal level will require new lines of inquiry into how phenotypic integration influences plant function in diverse environments. A better understanding of how root phenes interact to affect soil resource acquisition will be an important tool in the breeding of crops with superior stress tolerance and reduced dependence on intensive use of inputs.

  17. Bioaccumulation of HMW PAHs in the roots of wild blackberry from the Bor region (Serbia): Phytoremediation and biomonitoring aspects.

    Science.gov (United States)

    Alagić, Slađana Č; Jovanović, Vesna P Stankov; Mitić, Violeta D; Cvetković, Jelena S; Petrović, Goran M; Stojanović, Gordana S

    2016-08-15

    In this work, the samples of roots and soils from the rooting zone of wild blackberry were collected from the urban-industrial and rural locations near "The Copper Mining and Smelting Complex Bor" (Serbia); they were analyzed by gas chromatographic-mass spectrometric method to determine the content of high-molecular weight polycyclic aromatic hydrocarbons (HMW PAHs). The obtained results were further processed using bio-concentration factor, Pearson's correlation study and hierarchical cluster analysis with the aim of investigating if they may be in favor of wild blackberry as a suitable plant for biomonitoring or phytoremediation purposes. In spite of the fact that numerous complex factors can affect the assimilation and accumulation of PAHs in plants, the obtained data expressed clearly many interesting specifics related to HMW PAH accumulation in roots of wild blackberry that naturally grows in an area, which is heavily polluted by heavy metals. The accumulation of individual PAH compounds in plant roots was at different level. The most abundant compound in all plant samples was benzo[a]pyrene and based on the results obtained for this environmental indicator of carcinogenic PAHs, it was possible to make several central conclusions: wild blackberry showed an excellent potential for its extraction from the soil and further accumulation in root tissues which indicate that this plant species may be applied in phytoremediation procedures based on mechanisms such as phytoextraction/phytoaccumulation in roots; phytostabilization and rhizodegradation are also possible as remediation mechanisms; utilization of plant roots in soil monitoring is possible but in this case, only the combination with soil data can provide correct information. PMID:27110970

  18. Cluster headache

    Science.gov (United States)

    Doctors do not know exactly what causes cluster headaches. They seem to be related to the body's sudden release of histamine (chemical in the body released during an allergic response) or serotonin (chemical made by nerve cells). A problem in a small area at ...

  19. A thermodynamic formulation of root water uptake

    Science.gov (United States)

    Hildebrandt, Anke; Kleidon, Axel; Bechmann, Marcel

    2016-08-01

    By extracting bound water from the soil and lifting it to the canopy, root systems of vegetation perform work. Here we describe how root water uptake can be evaluated thermodynamically and demonstrate that this evaluation provides additional insights into the factors that impede root water uptake. We derive an expression that relates the energy export at the base of the root system to a sum of terms that reflect all fluxes and storage changes along the flow path in thermodynamic terms. We illustrate this thermodynamic formulation using an idealized setup of scenarios with a simple model. In these scenarios, we demonstrate why heterogeneity in soil water distribution and rooting properties affect the impediment of water flow even though the mean soil water content and rooting properties are the same across the scenarios. The effects of heterogeneity can clearly be identified in the thermodynamics of the system in terms of differences in dissipative losses and hydraulic energy, resulting in an earlier start of water limitation in the drying cycle. We conclude that this thermodynamic evaluation of root water uptake conveniently provides insights into the impediments of different processes along the entire flow path, which goes beyond resistances and also accounts for the role of heterogeneity in soil water distribution.

  20. Crescimento radicular de soja em razão da sucessão de cultivos e da compactação do solo Soybean root growth as affected by previous crop and soil compaction

    Directory of Open Access Journals (Sweden)

    Rosemeire Helena da Silva

    2002-06-01

    Full Text Available O objetivo do experimento foi avaliar o crescimento radicular e produção de matéria seca da parte aérea da soja (Glycine max (L. Merrill cultivada após diversas espécies vegetais, em solo com diferentes níveis de compactação. O trabalho foi realizado em vasos contendo amostras de um Latossolo Vermelho, textura franco arenosa, com camada de 3,5 cm (profundidade de 15 a 18,5 cm compactada até as densidades 1,12, 1,36 e 1,60 Mg m-3, onde cultivaram-se anteriormente aveia-preta, guandu, milheto, mucuna-preta, soja, sorgo granífero e tremoço-azul, e um tratamento sem planta (pousio. Essas espécies se desenvolveram por 37 a 39 dias, foram cortadas ao nível do solo, picadas em partes de aproximadamente 3 cm e deixadas sobre a superfície do vaso por 40 dias. Após esse período, cultivou-se a soja até 28 dias após a emergência, quando, então, as plantas foram colhidas. Foram avaliados produção de matéria seca da parte aérea e de raízes, e comprimento e diâmetro radicular da soja. O cultivo anterior com aveia-preta, guandu e milheto favoreceu o crescimento radicular da soja abaixo de camadas compactadas do solo. Independentemente do nível de compactação, o cultivo anterior com qualquer das espécies estudadas beneficiou a produção de matéria seca da parte aérea da soja.This study aimed at evaluating root growth and shoot dry matter production of soybean (Glycine max (L. Merrill cropped after different vegetal species, in a soil with different compaction levels. The experiment was conducted in pots containing a Dark-Red Latosol (Acrortox, loamy sand, and the pots had a layer 3.5 cm (15 to 18.5 cm thick and 15 cm deep compacted to 1.12, 1.36 and 1.60 Mg m-3. Before soybean, the pots were cropped with black oat, pigeon pea, pearl millet, black mucuna, soybean, grain sorghum and lupin, plus a treatment without plants. These species were grown for 37 to 39 days, when they were cut at soil level, prick in particles of

  1. Molecular dynamics simulation of melting behaviours of supported cobalt cluster

    International Nuclear Information System (INIS)

    The molecular dynamics simulation combined with the simulated annealing method are used to study the melting behaviors of free cobalt clusters and two kinds of supported cobalt clusters with cluster size ranging from 400 to 2000 atoms. Gupta potential is used for the cobalt - cobalt interactions in Co clusters. Influences on the melting properties are discussed with two kinds of supported potentials: the Lennard-Jones potential and the Morse potential. Our results reveal that with the same number of cobalt atoms and the same cobalt-substrate interation stength, the melting points and pre-melting intervals of the two kinds of supported Co clusters are all in reasonable agreement with each other. With increasing the depth of supported potential, the melting points increase for the supported cluster. Similar to the case of free clusters, the linear relation between the melting point and the inverse of cluster's size cube root is also found for the two kinds of supported clusters. (authors)

  2. Effects of Root-Growing Space on Its Absorbing Characteristics

    Institute of Scientific and Technical Information of China (English)

    SONG Hai-xing; LI Sheng-xiu

    2003-01-01

    Influences of root-growing space of maize upon root physiological characteristics, nutrient uptake and crop yields were studied under conditions with and without supply of water and N. Results showed that limitation of the root-growing space greatly affected root growth, decreased total root-absorbing area and TTC-reductive amounts. However, it obviously increased the root active-absorbing area, specific absorbing area (absorbing area per gram root weight) and specific active-absorbing area (actively absorbing area per gram root weight) in addition to promoting the TTC-reductive intensity. This clearly showed that plants were not passively tolerant to stress, but actively regulated their physiological metabolic processes, and strengthened their absorbing ability to increase water and nutrient uptake so that root injury by the environmental stress could be reduced. Supply of water and N stimulated root growth, increased root-absorbing area and activity, promoted nutrient uptake, and therefore increased crop yield and decreased the detrimental effects resulting from the limitation of roots-growing space.

  3. Ag on Ge(111): 2D x-ray structure analysis of the #sq root#3 x #sq root#3 superstructure

    DEFF Research Database (Denmark)

    Dornisch, D.; Moritz, W.; Schulz, H.;

    1992-01-01

    We have studied the Ag/Ge(111) square-root 3 x square-root 3 superstructure by grazing-incidence X-ray diffraction. In our structural analysis we find striking similarities to the geometry of Au on Si(111). The Ag atoms form trimer clusters with an Ag-Ag distance of 2.94 +/- 0.04 angstrom...

  4. Atributos químicos e perfil de enraizamento de milho influenciados pela calagem em semeadura direta Chemical attributes and corn root system development as affected by liming in no-till

    Directory of Open Access Journals (Sweden)

    Gabriel Henrique Melo Nascimento Leite

    2006-08-01

    ,20-0,30 m. Mesmo sob condições químicas adversas, em todos os tratamentos, o milho apresentou crescimento de raízes até 0,45 m de profundidade. O tratamento 100I apresentou maior crescimento de raízes até 0,15-0,20 m de profundidade do que os tratamentos com doses menores de calcário em superfície (50S e 25S, onde as raízes se concentraram na camada até 0,075 m. A incorporação do calcário proporcionou maior uniformidade na neutralização da acidez do solo em profundidade, o que se refletiu em maior quantidade de raízes até 0,45 m.In Rio Grande do Sul state, the area cultivated with under no-till system now amounts to 60 % of the total rain-fed cultivated area. However, there are still doubts as to crop practices in this soil conservation system, such as liming and fertilization as well as regarding root growth and crop productivity. The objective of this study was to evaluate the effects of lime doses and application forms on corn root development. The experiment was carried out in 1999/2000, in the experimental area of the Soil Science Department of the Federal University of Santa Maria, state of Rio Grande do Sul, Brazil, in a random block design in split plots, with four replications. The soil under study was a typical Hapludalf with 2 % slope. Main treatments were: no lime (SC, incorporation of 100 % of the recommended dose (100I, and 25 % (25S, 50 % (50S and 100 % (100S of the recommended dose (6.8 t ha-1 distributed over the soil surface. Lime was incorporated with conventional tillage in February 1996. Using the "nail board" method, with dimensions of 0,20 x 0,30 m, 0,30 x 0,45 m and 0,45 x 0,70 m, monoliths were taken from the soil profile, parallel to the corn sowing furrow, at 20, 54 and 80 days after corn emergence (DAE. The monoliths were carefully washed and the roots counted to establish a corn rooting profile in each treatment. Increasing lime doses applied on the soil surface (25S, 50S and 100S increased the depth at which elevations in p

  5. Chromatic roots and hamiltonian paths

    DEFF Research Database (Denmark)

    Thomassen, Carsten

    2000-01-01

    We present a new connection between colorings and hamiltonian paths: If the chromatic polynomial of a graph has a noninteger root less than or equal to t(n) = 2/3 + 1/3 (3)root (26 + 6 root (33)) + 1/3 (3)root (26 - 6 root (33)) = 1.29559.... then the graph has no hamiltonian path. This result is...

  6. Phaseolus vulgaris RbohB functions in lateral root development

    Science.gov (United States)

    Montiel, Jesús; Arthikala, Manoj-Kumar; Quinto, Carmen

    2013-01-01

    Respiratory burst oxidase homologs (RBOHs) catalyze the reduction of oxygen to generate superoxide anion, a kind of reactive oxygen species (ROS). The ROS produced by RBOHs play essential roles in diverse processes, such as root hair development, stomata closure and signaling mechanisms in response to abiotic stimuli and during plant-pathogen interactions. Recently, we found that PvRbohB silencing in transgenic Phaseolus vulgaris roots had a negative impact on lateral root density. In this work, we show that the downregulation of PvRbohB affects both the growth and ROS levels in recently emerged lateral roots. In addition, we found that the PvRbohB promoter was activated during lateral root primordium initiation in the pericycle, and remained active throughout lateral root development. This study identifies RBOHs as potentially important players in lateral root development in P. vulgaris. PMID:23221754

  7. Regional Innovation Clusters

    Data.gov (United States)

    Small Business Administration — The Regional Innovation Clusters serve a diverse group of sectors and geographies. Three of the initial pilot clusters, termed Advanced Defense Technology clusters,...

  8. Burkholderia Species Are Major Inhabitants of White Lupin Cluster Roots▿†

    OpenAIRE

    Weisskopf, Laure; Heller, Stefanie; Eberl, Leo

    2011-01-01

    The formation of cluster roots by plants represents a highly efficient strategy for acquisition of sparingly available phosphate. This particular root type is characterized by a densely branched structure and high exudation of organic acids and protons, which are likely to influence the resident bacterial community. Until now, the identity of the bacterial populations living in cluster roots has not been investigated. We applied cultivation-dependent and cultivation-independent methods to cha...

  9. Cinnamic Acid Increases Lignin Production and Inhibits Soybean Root Growth

    OpenAIRE

    Victor Hugo Salvador; Rogério Barbosa Lima; Wanderley Dantas dos Santos; Anderson Ricardo Soares; Paulo Alfredo Feitoza Böhm; Rogério Marchiosi; Maria de Lourdes Lucio Ferrarese; Osvaldo Ferrarese-Filho

    2013-01-01

    Cinnamic acid is a known allelochemical that affects seed germination and plant root growth and therefore influences several metabolic processes. In the present work, we evaluated its effects on growth, indole-3-acetic acid (IAA) oxidase and cinnamate 4-hydroxylase (C4H) activities and lignin monomer composition in soybean ( Glycine max ) roots. The results revealed that exogenously applied cinnamic acid inhibited root growth and increased IAA oxidase and C4H activities. The allelochemical in...

  10. Cluster forcing

    DEFF Research Database (Denmark)

    Christensen, Thomas Budde

    The cluster theory attributed to Michael Porter has significantly influenced industrial policies in countries across Europe and North America since the beginning of the 1990s. Institutions such as the EU, OECD and the World Bank and governments in countries such as the UK, France, The Netherlands......, Portugal and New Zealand have adopted the concept. Public sector interventions that aim to support cluster development in industries most often focus upon economic policy goals such as enhanced employment and improved productivity, but rarely emphasise broader societal policy goals relating to e...... a difference in terms of enhancing regional development but the paper also concludes that the interventions tend to follow the development path of the established industry and thus tend to neglect long term sustainable development issues while failing to escape the traditional confines of regional industrial...

  11. Root phenology at Harvard Forest and beyond

    Science.gov (United States)

    Abramoff, R. Z.; Finzi, A.

    2013-12-01

    growth was characterized by multiple production peaks. Q. rubra root growth experienced many small flushes around day of year (DOY) 156 (early June) and one large peak on 234 (late August). T. canadensis root growth peaked on DOY 188 (early July), 234.5 (late August) and 287 (mid-October). However, particular phenological patterns varied widely from site to site. Despite large spatial heterogeneity, it appears that Q. rubra experiences greater overall root production as well as more allocation to roots during the growing season. The storage pool of nonstructural carbohydrates experiences a mid-summer drawdown in Q. rubra but not T. canadensis roots. Timing of belowground C allocation to root growth and nonstructural carbohydrate accumulation may be regulated by climate factors as well as endogenous factors such as vessel size, growth form, or tradeoffs in C allocated between plant organs. Plant roots supply substrate to microbial communities and hence their production feeds back to other plant and soil processes that affect ecosystem C fluxes.

  12. Effect of root canal preparation, type of endodontic post and mechanical cycling on root fracture strength

    Directory of Open Access Journals (Sweden)

    Marília Pivetta RIPPE

    2014-06-01

    Full Text Available Objective: To evaluate the impact of the type of root canal preparation, intraradicular post and mechanical cycling on the fracture strength of roots. Material and Methods: eighty human single rooted teeth were divided into 8 groups according to the instruments used for root canal preparation (manual or rotary instruments, the type of intraradicular post (fiber posts- FRC and cast post and core- CPC and the use of mechanical cycling (MC as follows: Manual and FRC; Manual, FRC and MC; Manual and CPC; Manual, CPC and MC; Rotary and FRC; Rotary, FRC and MC; Rotary and CPC; Rotary, CPC and MC. The filling was performed by lateral compactation. All root canals were prepared for a post with a 10 mm length, using the custom #2 bur of the glass fiber post system. For mechanical cycling, the protocol was applied as follows: an angle of incidence of 45°, 37°C, 88 N, 4 Hz, 2 million pulses. All groups were submitted to fracture strength test in a 45° device with 1 mm/ min cross-head speed until failure occurred. Results: The 3-way ANOVA showed that the root canal preparation strategy (p<0.03 and post type (p<0.0001 affected the fracture strength results, while mechanical cycling (p=0.29 did not. Conclusion: The root canal preparation strategy only influenced the root fracture strength when restoring with a fiber post and mechanical cycling, so it does not seem to be an important factor in this scenario.

  13. Clustering experiments

    CERN Document Server

    Wang, Zhengwei; Tan, Ken; Di, Zengru; Roehner, Bertrand M

    2011-01-01

    It is well known that bees cluster together in cold weather, in the process of swarming (when the ``old'' queen leaves with part of the colony) or absconding (when the queen leaves with all the colony) and in defense against intruders such as wasps or hornets. In this paper we describe a fairly different clustering process which occurs at any temperature and independently of any special stimulus or circumstance. As a matter of fact, this process is about four times faster at 28 degree Celsius than at 15 degrees. Because of its simplicity and low level of ``noise'' we think that this phenomenon can provide a means for exploring the strength of inter-individual attraction between bees or other living organisms. For instance, and at first sight fairly surprisingly, our observations showed that this attraction does also exist between bees belonging to different colonies. As this study is aimed at providing a comparative perspective, we also describe a similar clustering experiment for red fire ants.

  14. Variations in soil detachment rates after wildfire as a function of soil depth, flow properties, and root properties

    Science.gov (United States)

    Moody, John A.; Nyman, Peter

    2013-01-01

    Wildfire affects hillslope erosion through increased surface runoff and increased sediment availability, both of which contribute to large post-fire erosion events. Relations between soil detachment rate, soil depth, flow and root properties, and fire impacts are poorly understood and not represented explicitly in commonly used post-fire erosion models. Detachment rates were measured on intact soil cores using a modified tilting flume. The cores were mounted flush with the flume-bed and a measurement was made on the surface of the core. The core was extruded upward, cut off, and another measurement was repeated at a different depth below the original surface of the core. Intact cores were collected from one site burned by the 2010 Fourmile Canyon (FMC) fire in Colorado and from one site burned by the 2010 Pozo fire in California. Each site contained contrasting vegetation and soil types. Additional soil samples were collected alongside the intact cores and were analyzed in the laboratory for soil properties (organic matter, bulk density, particle-size distribution) and for root properties (root density and root-length density). Particle-size distribution and root properties were different between sites, but sites were similar in terms of bulk density and organic matter. Soil detachment rates had similar relations with non-uniform shear stress and non-uniform unit stream power. Detachment rates within single sampling units displayed a relatively weak and inconsistent relation to flow variables. When averaged across all clusters, the detachment rate displayed a linear relation to shear stress, but variability in soil properties meant that the shear stress accounted for only a small proportion of the overall variability in detachment rates (R2 = 0.23; R2 is the coefficient of determination). Detachment rate was related to root-length density in some clusters (R2 values up to 0.91) and unrelated in others (R2 values 2 value improved and the range of exponents became

  15. Root distributions in a laboratory box evaluated using two different techniques (gravimetric and image processing and their impact on root water uptake simulated with HYDRUS

    Directory of Open Access Journals (Sweden)

    Klement Aleš

    2016-06-01

    Full Text Available Knowledge of the distribution of plant roots in a soil profile (i.e. root density is needed when simulating root water uptake from soil. Therefore, this study focused on evaluating barley and wheat root densities in a sand-vermiculite substrate. Barley and wheat were planted in a flat laboratory box under greenhouse conditions. The box was always divided into two parts, where a single plant row and rows cross section (respectively was simulated. Roots were excavated at the end of the experiment and root densities were assessed using root zone image processing and by weighing. For this purpose, the entire area (width of 40 and height of 50 cm of each scenario was divided into 80 segments (area of 5×5 cm. Root density in each segment was expressed as a root percentage of the entire root cluster. Vertical root distributions (i.e. root density with respect to depth were also calculated as a sum of root densities in each 5 cm layer. Resulting vertical root densities, measured evaporation from the water table (used as the potential root water uptake, and the Feddes stress response function model were used for simulating substrate water regime and actual root water uptake for all scenarios using HYDRUS-1D. All scenarios were also simulated using HYDRUS-2D. One scenario (areal root density of barley sown in a single row, obtained using image analysis is presented in this paper (because most scenarios showed root water uptakes similar to results of 1D scenarios.

  16. ROOT User Workshop 2013

    CERN Document Server

    2013-01-01

    Since almost two decades, ROOT has established itself as the framework for HENP data processing and analysis. The LHC upgrade program and the new experiments being designed at CERN and elsewhere will pose even more formidable challenges in terms of data complexity and size. The new parallel and heterogeneous computing architectures that are either announced or already available will call for a deep rethinking of the code and the data structures to be exploited efficiently. This workshop, following from a successful series of such events, will allow you to learn in detail about the new ROOT 6 and will help shape the future evolution of ROOT.

  17. Dynamically allocated virtual clustering management system

    Science.gov (United States)

    Marcus, Kelvin; Cannata, Jess

    2013-05-01

    The U.S Army Research Laboratory (ARL) has built a "Wireless Emulation Lab" to support research in wireless mobile networks. In our current experimentation environment, our researchers need the capability to run clusters of heterogeneous nodes to model emulated wireless tactical networks where each node could contain a different operating system, application set, and physical hardware. To complicate matters, most experiments require the researcher to have root privileges. Our previous solution of using a single shared cluster of statically deployed virtual machines did not sufficiently separate each user's experiment due to undesirable network crosstalk, thus only one experiment could be run at a time. In addition, the cluster did not make efficient use of our servers and physical networks. To address these concerns, we created the Dynamically Allocated Virtual Clustering management system (DAVC). This system leverages existing open-source software to create private clusters of nodes that are either virtual or physical machines. These clusters can be utilized for software development, experimentation, and integration with existing hardware and software. The system uses the Grid Engine job scheduler to efficiently allocate virtual machines to idle systems and networks. The system deploys stateless nodes via network booting. The system uses 802.1Q Virtual LANs (VLANs) to prevent experimentation crosstalk and to allow for complex, private networks eliminating the need to map each virtual machine to a specific switch port. The system monitors the health of the clusters and the underlying physical servers and it maintains cluster usage statistics for historical trends. Users can start private clusters of heterogeneous nodes with root privileges for the duration of the experiment. Users also control when to shutdown their clusters.

  18. Characterization of alfalfa populations contrasting for root system architecture (RSA)

    Science.gov (United States)

    The root system architecture affects the capacity for nutrient and water uptake thus impacting biomass yield production and may contribute to the persistence of perennial plants. The objectives of this study were to phenotype the roots of three alfalfa populations and identify differences between di...

  19. Shoot-supplied ammonium targets the root auxin influx carrier AUX1 and inhibits lateral root emergence in Arabidopsis

    KAUST Repository

    Li, Baohai

    2011-03-24

    Deposition of ammonium (NH4 +) from the atmosphere is a substantial environmental problem. While toxicity resulting from root exposure to NH4 + is well studied, little is known about how shoot-supplied ammonium (SSA) affects root growth. In this study, we show that SSA significantly affects lateral root (LR) development. We show that SSA inhibits lateral root primordium (LRP) emergence, but not LRP initiation, resulting in significantly impaired LR number. We show that the inhibition is independent of abscisic acid (ABA) signalling and sucrose uptake in shoots but relates to the auxin response in roots. Expression analyses of an auxin-responsive reporter, DR5:GUS, and direct assays of auxin transport demonstrated that SSA inhibits root acropetal (rootward) auxin transport while not affecting basipetal (shootward) transport or auxin sensitivity of root cells. Mutant analyses indicated that the auxin influx carrier AUX1, but not the auxin efflux carriers PIN-FORMED (PIN)1 or PIN2, is required for this inhibition of LRP emergence and the observed auxin response. We found that AUX1 expression was modulated by SSA in vascular tissues rather than LR cap cells in roots. Taken together, our results suggest that SSA inhibits LRP emergence in Arabidopsis by interfering with AUX1-dependent auxin transport from shoot to root. © 2011 Blackwell Publishing Ltd.

  20. Peroxidase activity in roots of arracacha affected by pH and temperature = Atividade da peroxidase em raízes de batata-baroa afetada pelo pH e temperatura

    Directory of Open Access Journals (Sweden)

    Luciana Nunes Menolli

    2011-07-01

    Full Text Available In this paper, roots of arracacha (Arracacia xanthorrhyza Bancroft were stored at 5ºC to induce chilling injury symptoms and stress-related peroxidase activity. Later, peroxidase kinetic activity was determined in different pH and temperature conditions. For this, soluble crude extract was sequentially saturated with ammonium sulfate, obtaining a semi-purified enzyme solution used for the analysis. Activity of peroxidase induced by the chilling at 5oC was determined from pH 2.5 to 9.0 and at temperature ranging from 10 to80oC. The peroxidase had higher activity when the reaction occurred between pH 5.5 and 6.0 and at temperature of 30oC. Complete inactivation of the activity was observed in pH 2.5 after 60 minutes of pre-incubation or at 60oC for 10 minutes or alternatively at 70oCafter 5 minutes of pre-incubation. The enzyme is more susceptible to inactivation in acid than alkaline pHs or alternatively using heat treatment.Neste trabalho, raízes de batata-baroa (Arracacia xanthorrhiza Bancroft foram armazenadas a 5oC para induzir injúria por frio e expressar atividade da peroxidase de estresse. Posteriormente, a cinética de atividade foi determinada em diferentes condições depHs e temperatura. Para isto, extrato solúvel da raiz foi sequencialmente saturado com sulfato de amônio, obtendo-se uma preparação semi-purificada para a análise enzimática. Atividade peroxidativa induzida pela temperatura de armazenamento de 5oC foideterminada em pHs de 2,5 a 9,0 e a temperaturas de 10 a 80oC. A atividade da peroxidase foi maior quando a reação foi realizada nos pHs de 5,5 e 6,0 e temperatura de 30oC. A inativação completa da enzima ocorreu em pH de 2,5 após 60 min. de pré-incubação ou a60oC por 10 min., e alternativamente a 70oC após 5 min. de pré-incubação. A enzima foi mais susceptível à inativação em pH ácido do que alcalino, podendo também ser inativada pelo tratamento de calor.

  1. Desenvolvimento Vegetativo e morfologia radicular de citrange carrizo afetado por ácido indolbutírico e micorrizas arbusculares Vegetative development and root morphology of carrizo citrange affected by indolebutyric acid and arbuscular mycorrhizal fungi

    Directory of Open Access Journals (Sweden)

    Paulo Vitor Dutra de Souza

    2000-04-01

    Full Text Available Este estudo foi realizado na localidade de Alcanar (Tarragona, Espanha e objetivou avaliar o efeito de cinco concentrações do ácido indolbutírico (AIB (0,0; 0,5; 1,0; 1,5; 2,0 g/L e da inoculação com micorrizas arbusculares (MA (Glomus intraradices Schenck & Smith sobre o desenvolvimento vegetativo, conteúdo foliar de P e K e morfologia radicular de plântulas de citrange Carrizo (Citrus sinensis (L. X Poncirus trifoliata (L. Raf.. Utilizou-se o delineamento experimental de blocos completos casualisados em esquema fatorial, com 4 repetições e 10 plantas por parcela. A aplicação de AIB não alterou o desenvolvimento vegetativo das plântulas cultivadas em ausência de MA, apesar de haver incrementado a quantidade de P e K e a espessura dos feixes vasculares. As MA incrementaram o conteúdo de P foliar. Encontrou-se uma interação positiva entre o AIB e as MA, pois as plântulas micorrizadas apresentaram um incremento no desenvolvimento vegetativo, nos conteúdos foliares de P e K e na espessura dos feixes vasculares com o aumento das concentrações de AIB.This study was carried out in Alcanar (Tarragona - Spain to evaluate the effect of five indolebutyric acid (IBA concentrations (0.0; 0.5; 1.0; 1.5; 2.0 g/L and inoculation with arbuscular mycorrhizae fungi (AMF (Glomus intraradices Schenck & Smith on Carrizo citrange (Citrus sinensis (L. x Poncirus trifoliata (L. Raf. vegetative development, P and K foliar contents and root morphology. The experimental design was in a Completly Randomized Block Design with 10 seedlings per plot and 4 replicates. The IBA concentrations had no effect on vegetative development of nonmycorrhizal seedlings, althougt it had increased P and K foliar contents and primary xylem tickness. AMF increased P foliar content. IBA x AMF interaction was observed, increasing IBA concentrations on mycorrhizal seedlings resulted in increased in vegetative development, P and K foliar contents and primary xylem thickness.

  2. Quantitative measurements of root water uptake and root hydraulic conductivities

    Science.gov (United States)

    Zarebanadkouki, Mohsen; Javaux, Mathieu; Meunier, Felicien; Couvreur, Valentin; Carminati, Andrea

    2016-04-01

    How is root water uptake distributed along the root system and what root properties control this distribution? Here we present a method to: 1) measure root water uptake and 2) inversely estimate the root hydraulic conductivities. The experimental method consists in using neutron radiography to trace deuterated water (D2O) in soil and roots. The method was applied to lupines grown aluminium containers filled with a sandy soil. When the lupines were 4 weeks old, D2O was locally injected in a selected soil regions and its transport was monitored in soil and roots using time-series neutron radiography. By image processing, we quantified the concentration of D2O in soil and roots. We simulated the transport of D2O into roots using a diffusion-convection numerical model. The diffusivity of the roots tissue was inversely estimated by simulating the transport of D2O into the roots during night. The convective fluxes (i.e. root water uptake) were inversely estimating by fitting the experiments during day, when plants were transpiring, and assuming that root diffusivity did not change. The results showed that root water uptake was not uniform along the roots. Water uptake was higher at the proximal parts of the lateral roots and it decreased by a factor of 10 towards the distal parts. We used the data of water fluxes to inversely estimate the profile of hydraulic conductivities along the roots of transpiring plants growing in soil. The water fluxes in the lupine roots were simulated using the Hydraulic Tree Model by Doussan et al. (1998). The fitting parameters to be adjusted were the radial and axial hydraulic conductivities of the roots. The results showed that by using the root architectural model of Doussan et al. (1998) and detailed information of water fluxes into different root segments we could estimate the profile of hydraulic conductivities along the roots. We also found that: 1) in a tap-rooted plant like lupine water is mostly taken up by lateral roots; (2) water

  3. Genetic association among root morphology, root quality and root yield in ashwagandha (Withania somnifera

    Directory of Open Access Journals (Sweden)

    Kumar Ramesh R.

    2011-01-01

    Full Text Available Ashwagandha (Withania somnifera is a dryland medicinal crop and roots are used as valuable drug in traditional systems of medicine. Morphological variants (morphotypes and the parental populations were evaluated for root - morphometric, quality and yield traits to study genetic association among them. Root morphometric traits (root length, root diameter, number of secondary roots/ plant and crude fiber content exhibited strong association among them and showed significant positive genotypic correlation with yield. Starch-fiber ratio (SFR, determinant of brittle root texture showed strong negative association with root yield. The total alkaloid content had positive genotypic correlation with root yield. So genetic upgradation should aim at optimum balance between two divergent groups of traits i.e. root yield traits (root morphometric traits and crude fiber content and root textural quality traits (starch content and SFR to develop superior genotypes with better yield and quality.

  4. Tomato Root Response to Subsurface Drip Irrigation

    Institute of Scientific and Technical Information of China (English)

    ZHUGE Yu-Ping; ZHANG Xu-Dong; ZHANG Yu-Long; LI Jun; YANG Li-Juan; HUANG Yi; LIU Ming-Da

    2004-01-01

    Four depth treatments of subsurface drip irrigation pipes were designated as 1) at 20,2) 30 and 3) 40 cm depths all with a drip-proof flumes underneath,and 4) at 30 cm without a drip-proof flume to investigate the responses of a tomato root system to different technical parameters of subsurface drip irrigation in a glass greenhouse,to evaluate tomato growth as affected by subsurface drip irrigation,and to develop an integrated subsurface drip irrigation method for optimal tomato yield and water use in a glass greenhouse. Tomato seedlings were planted above the subsurface drip irrigation pipe. Most of the tomato roots in treatment 1 were found in the top 0-20 cm soil depth with weak root activity but with yield and water use efficiency (WUE) significantly less (P ---- 0.05) than treatment 2; root activity and tomato yield were significantly higher (P = 0.05) with treatment 3 compared to treatment 1; and with treatment 2 the tomato roots and shoots grew harmoniously with root activity,nutrient uptake,tomato yield and WUE significantly higher (P= 0.05) or as high as the other treatments. These findings suggested that subsurface drip irrigation with pipes at 30 cm depth with a drip-proof flume placed underneath was best for tomato production in greenhouses. In addition,the irrigation interval should be about 7-8 days and the irrigation rate should be set to 225 m3 ha-1 per event.

  5. Differential response of root morphology to potassium deficient stress among rice genotypes varying in potassium efficiency

    Institute of Scientific and Technical Information of China (English)

    Yan-bo JIA; Xiao-e YANG; Ying FENG; Ghulam JILANI

    2008-01-01

    Disparity in the root morphology of six rice (Oryza sativa L.) genotypes varying in potassium (K) efficiency was studied with three K levels: 5 mg/L (low),10 mg/L (moderate) and 40 mg/L (adequate) in hydroponic culture.Morphological parameters included root length,surface area,volume and count of lateral roots,as well as fine (diameter0.2 mm) roots.The results indicate that the root growth of all genotypes was reduced under low K,but moderate K deficiency increased the root length of the efficient genotypes.At deficient and moderate K levels,all the efficient rice genotypes developed more fine roots (diameter<0.2 mm) than the inefficient ones.Both fine root count and root surface area were found to be the best parameters to portray K stress in rice.In accordance with the root morphology,higher K concentrations were noted in shoots of the efficient genotypes when grown at moderate and deficient K levels,indicating that root morphology parameters are involved in root uptake for K and in the translocation of K up to shoots.K deficiency affected not only the root morphology,but also the root ultra-structure.The roots of high-efficient genotypes had stronger tolerance to K deficient stress for root membrane damage,and could maintain the developed root architecture to adapt to the low K growth medium.

  6. Second generation stellar disks in Globular Clusters and cluster ellipticities

    CERN Document Server

    Mastrobuono-Battisti, Alessandra

    2015-01-01

    Globular clusters (GCs) and Nuclear Stellar Clusters (NSCs) are typically composed by several stellar generations, characterized by different ages and chemical compositions. The youngest populations in NSCs appear to reside in disk-like structures, as observed in our Galaxy and in M31. Gas infall followed by formation of second generation (SG) stars in GCs may similarly form disk-like structures in the clusters nuclei. Here we explore this possibility and follow the long term evolution of stellar disks embedded in GCs, and study their affects on the evolution of the clusters. We study disks with different masses by means of detailed N-body simulations and explore their morphological and kinematic signatures on the GC structures. We find that as a second generation disk relaxes, the old, first generation, stellar population flattens and becomes more radially anisotropic, making the GC structure become more elliptical. The second generation stellar population is characterized by a lower velocity dispersion, and...

  7. Modeling root reinforcement using root-failure Weibull survival function

    Directory of Open Access Journals (Sweden)

    M. Schwarz

    2013-03-01

    Full Text Available Root networks contribute to slope stability through complicated interactions that include mechanical compression and tension. Due to the spatial heterogeneity of root distribution and the dynamic of root turnover, the quantification of root reinforcement on steep slope is challenging and consequently the calculation of slope stability as well. Although the considerable advances in root reinforcement modeling, some important aspect remain neglected. In this study we address in particular to the role of root strength variability on the mechanical behaviors of a root bundle. Many factors may contribute to the variability of root mechanical properties even considering a single class of diameter. This work presents a new approach for quantifying root reinforcement that considers the variability of mechanical properties of each root diameter class. Using the data of laboratory tensile tests and field pullout tests, we calibrate the parameters of the Weibull survival function to implement the variability of root strength in a numerical model for the calculation of root reinforcement (RBMw. The results show that, for both laboratory and field datasets, the parameters of the Weibull distribution may be considered constant with the exponent equal to 2 and the normalized failure displacement equal to 1. Moreover, the results show that the variability of root strength in each root diameter class has a major influence on the behavior of a root bundle with important implications when considering different approaches in slope stability calculation. Sensitivity analysis shows that the calibration of the tensile force and the elasticity of the roots are the most important equations, as well as the root distribution. The new model allows the characterization of root reinforcement in terms of maximum pullout force, stiffness, and energy. Moreover, it simplifies the implementation of root reinforcement in slope stability models. The realistic quantification of root

  8. Root Diseases: Primary Agents and Secondary Consequences of Disturbance

    Energy Technology Data Exchange (ETDEWEB)

    Otrosina, W.J.; Ferrell, G.T.

    1995-01-01

    A pathogen such as the P-group of Heterobasidion annosum has become an intractable problem in many Sienna east side pine stands in California because the fungus is adapted to colonization of freshly cut stump surfaces. Other diseases such as blackstain root disease are associated with certain root feeding bark beetles that are attracted to tree roots after site disturbances such as thinning. Fire may also affect various root disease fungi and their pathological behavior in longleaf pine through interactions with various soil factors as a consequence of various land use.

  9. Is Regional Root Reinforcement Controlled by Soil Moisture Variability?

    Science.gov (United States)

    Hales, T.; Ford, C. R.

    2011-12-01

    Climate change will alter the amount, type (i.e., snow vs. rain), and timing of precipitation that controls many hazardous Earth surface processes, including debris flows. Most GCMs agree that as climate warms the frequency of extreme precipitation will increase across the globe. Debris flow events triggered by heavy precipitation will likely also increase. Precipitation also affects the resistance to debris flow initiation by controlling belowground plant hydraulic architecture (e.g. root frequency, diameter distribution, tensile strength). Quantifying the links between precipitation, below ground properties, and the processes that initiate debris flows are therefore critical to understanding future hazard. To explore these links, we conducted a field experiment in the Coweeta Hydrologic Laboratory by excavating 12 soil pits (~1 m3), from two topographies (noses, hollows), and two tree species (Liriodendron tulipifera and Betula lenta). For each species and topography, we collected all biomass from five soil depths and measured soil moisture at 30, 60, and 90cm depth. For each depth we also measured root tensile strength, root cellulose content. Where we collected soil moisture data, we also measured root and soil hydraulic conductivity. Our data show a link between soil moisture content and root biomass distribution; root biomass is more evenly distributed through the soil column in hollows compared to noses. This relationship is consistent with the hypothesis that more consistent soil moisture in hollows allows plant roots to access resources from deeper within the soil column. This physiologic control has a significant effect on root cohesion, with trees on noses (or lower average soil moisture) providing greater root cohesion close to the surface, but considerably less cohesion at depth. Root tensile strength correlated with local daily soil moisture rather than the long term differences represented by noses and hollows. Daily soil moisture affected the amount

  10. Globular Cluster Formation in the Virgo Cluster

    CERN Document Server

    Moran, C Corbett; Lake, G

    2014-01-01

    Metal poor globular clusters (MPGCs) are a unique probe of the early universe, in particular the reionization era. Systems of globular clusters in galaxy clusters are particularly interesting as it is in the progenitors of galaxy clusters that the earliest reionizing sources first formed. Although the exact physical origin of globular clusters is still debated, it is generally admitted that globular clusters form in early, rare dark matter peaks (Moore et al. 2006; Boley et al. 2009). We provide a fully numerical analysis of the Virgo cluster globular cluster system by identifying the present day globular cluster system with exactly such early, rare dark matter peaks. A popular hypothesis is that that the observed truncation of blue metal poor globular cluster formation is due to reionization (Spitler et al. 2012; Boley et al. 2009; Brodie & Strader 2006); adopting this view, constraining the formation epoch of MPGCs provides a complementary constraint on the epoch of reionization. By analyzing both the l...

  11. Glucose and auxin signaling interaction in controlling Arabidopsis thaliana seedlings root growth and development.

    Directory of Open Access Journals (Sweden)

    Bhuwaneshwar S Mishra

    Full Text Available BACKGROUND: Plant root growth and development is highly plastic and can adapt to many environmental conditions. Sugar signaling has been shown to affect root growth and development by interacting with phytohormones such as gibberellins, cytokinin and abscisic acid. Auxin signaling and transport has been earlier shown to be controlling plant root length, number of lateral roots, root hair and root growth direction. PRINCIPAL FINDINGS: Increasing concentration of glucose not only controls root length, root hair and number of lateral roots but can also modulate root growth direction. Since root growth and development is also controlled by auxin, whole genome transcript profiling was done to find out the extent of interaction between glucose and auxin response pathways. Glucose alone could transcriptionally regulate 376 (62% genes out of 604 genes affected by IAA. Presence of glucose could also modulate the extent of regulation 2 fold or more of almost 63% genes induced or repressed by IAA. Interestingly, glucose could affect induction or repression of IAA affected genes (35% even if glucose alone had no significant effect on the transcription of these genes itself. Glucose could affect auxin biosynthetic YUCCA genes family members, auxin transporter PIN proteins, receptor TIR1 and members of a number of gene families including AUX/IAA, GH3 and SAUR involved in auxin signaling. Arabidopsis auxin receptor tir1 and response mutants, axr2, axr3 and slr1 not only display a defect in glucose induced change in root length, root hair elongation and lateral root production but also accentuate glucose induced increase in root growth randomization from vertical suggesting glucose effects on plant root growth and development are mediated by auxin signaling components. CONCLUSION: Our findings implicate an important role of the glucose interacting with auxin signaling and transport machinery to control seedling root growth and development in changing nutrient

  12. Changes in polyamines, auxins and peroxidase activity during in vitro rooting of Fraxinus angustifolia shoots: an auxin-independent rooting model.

    Science.gov (United States)

    Tonon, G; Kevers, C; Gaspar, T

    2001-07-01

    Among shoots of Fraxinus angustifolia Vahl raised in vitro, 76% rooted after culture on root induction medium for 5 days in darkness followed by culture on root expression medium for 15 days in light. The addition of 20.7 microM indole-butyric acid (IBA) to the root induction medium did not significantly increase the rooting percentage (88%). Putrescine, spermidine, cyclohexylamine (CHA) and aminoguanidine (AG) enhanced rooting up to 100% (98.66% for AG), when applied during root induction in the absence of IBA, otherwise these compounds inhibited rooting, as did spermine and difluoromethylornithine (DFMO) + difluoromethylarginine (DFMA). The root induction phase was characterized by a temporary increase in endogenous free indole-acetic acid (IAA) and putrescine concentrations during root induction, whereas the root expression phase was characterized by increased peroxidase activity and low concentrations of polyamines. These changes were specifically associated with the rooting process and did not depend on the presence of exogenous IBA, because application of exogenous IBA enhanced the amount of IAA in the cuttings but did not affect rooting or the pattern of changes in polyamines and peroxidase. The effects of CHA, AG and DFMO + DFMA on endogenous concentrations of auxins and polyamines highlight the close relationship between the effects of IAA and putrescine in root induction and suggest that polyamine catabolism has an important role in root formation and elongation.

  13. Characteristic of Small Scale Food Industry Cluster in West Sumatera

    OpenAIRE

    Gunarif Taib; Santosa Santosa; Masrul Djalal; Helmi Helmi

    2014-01-01

    Clusters of small-scale food industries have different characteristics with industrial cluster in general. These characteristics need to know to develop a plan for cluster development. This study was conducted to determine charasteristics clusters of small-scale food industry, especially in West Sumatra. For the analysis of the components of industrial and technological components that affect the development of small-scale food industry cluster in West Sumatra. All variables influence the lev...

  14. Modified K-Means for Better Initial Cluster Centres

    OpenAIRE

    Kalpana D. Joshi; P.S. Nalwade

    2013-01-01

    The k-means clustering algorithm is most popularly used in data mining for real worldapplications. The efficiency and performance of the k-means algorithm is greatly affected by initial clustercenters as different initial cluster centers often lead to different clustering. In this paper, we propose amodified k-means algorithm which has additional steps for selecting better cluster centers. We compute Minand Max distance for every cluster and find high density objects for selection of better k.

  15. A Case of Dentinogenesis Imperfecta Treated with Submerged Root Technique.

    Science.gov (United States)

    Uday, Ginjupally; Chandar, Bhanu; Srilakshmi, J; Khaitan, Tanya; Babu, B Balaji

    2015-09-01

    Dentinogenesis imperfecta (DGI), an autosomal dominant trait, is one of the most common hereditary disorders affecting both the formation and mineralization of dentin. Either or both primary and permanent dentition is affected by it. Here, we present a case report of a 13-year-old female patient affected with DGI who had undergone prosthetic rehabilitation with submerged root technique.

  16. Classification of Different Species Families using Clustering Algorithm

    Directory of Open Access Journals (Sweden)

    D.Chandravathi

    2010-08-01

    Full Text Available The division of similar objects into groups is known as Clustering. The main objective of this implementation is classification of DNA sequences related to different species and their families using Clustering Algorithm- Leader-sub leader algorithm. Clustering is done with the help of threshold value of scoring matrix. It is another simple and efficient technique that may help to find family, uperfamily and sub-family by generating sub clusters. From thisanalysis there may be a chance that members in sub-cluster may be affected if one of the leader clusters gets affected.

  17. The "Green" Root Beer Laboratory

    Science.gov (United States)

    Clary, Renee; Wandersee, James

    2010-01-01

    No, your students will not be drinking green root beer for St. Patrick's Day--this "green" root beer laboratory promotes environmental awareness in the science classroom, and provides a venue for some very sound science content! While many science classrooms incorporate root beer-brewing activities, the root beer lab presented in this article has…

  18. Optical Substructures in 48 Galaxy Clusters

    CERN Document Server

    Girardi, M; Fadda, D; Giuricin, G; Mardirossian, F; Mezzetti, M

    1996-01-01

    We analyze the presence of substructures in a set of 48 galaxy clusters, by using galaxy positions and redshifts. We use a multi-scale analysis which couples kinematical estimators with the wavelet transform. 14% of our clusters are strongly substructured (i.e. they are bimodal or complex) and 24% of the remaining unimodal clusters contain substructures at small scales. Thus, in substantial agreement with previous studies, about one third of clusters show substructures. In unimodal clusters the presence of substructures does not affect the estimates of both virial masses and velocity dispersions, which are generally in good agreement with the X-ray temperatures. Thus, unimodal clusters are not too far from a status of dynamical equilibrium. On the contrary, velocity dispersions and masses for some bimodal or complex clusters strongly depend on whether they are treated as single systems or as sums of different clumps and X-ray temperatures and velocity dispersions may be very different.

  19. Stellar Encounter Rate in Galactic Globular Clusters

    CERN Document Server

    Bahramian, Arash; Sivakoff, Gregory R; Gladstone, Jeanette C

    2013-01-01

    The high stellar densities in the cores of globular clusters cause significant stellar interactions. These stellar interactions can produce close binary mass-transferring systems involving compact objects and their progeny, such as X-ray binaries and radio millisecond pulsars. Comparing the numbers of these systems and interaction rates in different clusters drives our understanding of how cluster parameters affect the production of close binaries. In this paper we estimate stellar encounter rates (Gamma) for 124 Galactic globular clusters based on observational data as opposed to the methods previously employed, which assumed "King-model" profiles for all clusters. By deprojecting cluster surface brightness profiles to estimate luminosity density profiles, we treat "King-model" and "core-collapsed" clusters in the same way. In addition, we use Monte-Carlo simulations to investigate the effects of uncertainties in various observational parameters (distance, reddening, surface brightness) on Gamma, producing t...

  20. Contributions of roots and rootstocks to sustainable, intensified crop production.

    Science.gov (United States)

    Gregory, Peter J; Atkinson, Christopher J; Bengough, A Glyn; Else, Mark A; Fernández-Fernández, Felicidad; Harrison, Richard J; Schmidt, Sonja

    2013-03-01

    Sustainable intensification is seen as the main route for meeting the world's increasing demands for food and fibre. As demands mount for greater efficiency in the use of resources to achieve this goal, so the focus on roots and rootstocks and their role in acquiring water and nutrients, and overcoming pests and pathogens, is increasing. The purpose of this review is to explore some of the ways in which understanding root systems and their interactions with soils could contribute to the development of more sustainable systems of intensive production. Physical interactions with soil particles limit root growth if soils are dense, but root-soil contact is essential for optimal growth and uptake of water and nutrients. X-ray microtomography demonstrated that maize roots elongated more rapidly with increasing root-soil contact, as long as mechanical impedance was not limiting root elongation, while lupin was less sensitive to changes in root-soil contact. In addition to selecting for root architecture and rhizosphere properties, the growth of many plants in cultivated systems is profoundly affected by selection of an appropriate rootstock. Several mechanisms for scion control by rootstocks have been suggested, but the causal signals are still uncertain and may differ between crop species. Linkage map locations for quantitative trait loci for disease resistance and other traits of interest in rootstock breeding are becoming available. Designing root systems and rootstocks for specific environments is becoming a feasible target.

  1. Comparative RNA-Seq Analysis Reveals That Regulatory Network of Maize Root Development Controls the Expression of Genes in Response to N Stress.

    Science.gov (United States)

    He, Xiujing; Ma, Haixia; Zhao, Xiongwei; Nie, Shujun; Li, Yuhua; Zhang, Zhiming; Shen, Yaou; Chen, Qi; Lu, Yanli; Lan, Hai; Zhou, Shufeng; Gao, Shibin; Pan, Guangtang; Lin, Haijian

    2016-01-01

    Nitrogen (N) is an essential nutrient for plants, and it directly affects grain yield and protein content in cereal crops. Plant root systems are not only critical for anchorage in the soil, but also for N acquisition. Therefore, genes controlling root development might also affect N uptake by plants. In this study, the responses of nitrogen on root architecture of mutant rtcs and wild-type of maize were investigated by morphological and physiological analysis. Subsequently, we performed a comparative RNA-Seq analysis to compare gene expression profiles between mutant rtcs roots and wild-type roots under different N conditions. We identified 786 co-modulated differentially expressed genes (DEGs) related to root development. These genes participated in various metabolic processes. A co-expression cluster analysis and a cis-regulatory motifs analysis revealed the importance of the AP2-EREBP transcription factor family in the rtcs-dependent regulatory network. Some genotype-specific DEGs contained at least one LBD motif in their promoter region. Further analyses of the differences in gene transcript levels between rtcs and wild-type under different N conditions revealed 403 co-modulated DEGs with distinct functions. A comparative analysis revealed that the regulatory network controlling root development also controlled gene expression in response to N-deficiency. Several AP2-EREBP family members involved in multiple hormone signaling pathways were among the DEGs. These transcription factors might play important roles in the rtcs-dependent regulatory network related to root development and the N-deficiency response. Genes encoding the nitrate transporters NRT2-1, NAR2.1, NAR2.2, and NAR2.3 showed much higher transcript levels in rtcs than in wild-type under normal-N conditions. This result indicated that the LBD gene family mainly functions as transcriptional repressors, as noted in other studies. In summary, using a comparative RNA-Seq-based approach, we identified

  2. Comparative RNA-Seq Analysis Reveals That Regulatory Network of Maize Root Development Controls the Expression of Genes in Response to N Stress.

    Directory of Open Access Journals (Sweden)

    Xiujing He

    Full Text Available Nitrogen (N is an essential nutrient for plants, and it directly affects grain yield and protein content in cereal crops. Plant root systems are not only critical for anchorage in the soil, but also for N acquisition. Therefore, genes controlling root development might also affect N uptake by plants. In this study, the responses of nitrogen on root architecture of mutant rtcs and wild-type of maize were investigated by morphological and physiological analysis. Subsequently, we performed a comparative RNA-Seq analysis to compare gene expression profiles between mutant rtcs roots and wild-type roots under different N conditions. We identified 786 co-modulated differentially expressed genes (DEGs related to root development. These genes participated in various metabolic processes. A co-expression cluster analysis and a cis-regulatory motifs analysis revealed the importance of the AP2-EREBP transcription factor family in the rtcs-dependent regulatory network. Some genotype-specific DEGs contained at least one LBD motif in their promoter region. Further analyses of the differences in gene transcript levels between rtcs and wild-type under different N conditions revealed 403 co-modulated DEGs with distinct functions. A comparative analysis revealed that the regulatory network controlling root development also controlled gene expression in response to N-deficiency. Several AP2-EREBP family members involved in multiple hormone signaling pathways were among the DEGs. These transcription factors might play important roles in the rtcs-dependent regulatory network related to root development and the N-deficiency response. Genes encoding the nitrate transporters NRT2-1, NAR2.1, NAR2.2, and NAR2.3 showed much higher transcript levels in rtcs than in wild-type under normal-N conditions. This result indicated that the LBD gene family mainly functions as transcriptional repressors, as noted in other studies. In summary, using a comparative RNA-Seq-based approach

  3. Cluster Decline and Resilience

    DEFF Research Database (Denmark)

    Østergaard, Christian Richter; Park, Eun Kyung

    Most studies on regional clusters focus on identifying factors and processes that make clusters grow. However, sometimes technologies and market conditions suddenly shift, and clusters decline. This paper analyses the process of decline of the wireless communication cluster in Denmark, 1963...... in new resources to the cluster but being quick to withdraw in times of crisis....

  4. Dynamical evolution of globular-cluster systems in clusters of galaxies

    Energy Technology Data Exchange (ETDEWEB)

    Muzzio, J.C.

    1987-04-01

    The dynamical processes that affect globular-cluster systems in clusters of galaxies are analyzed. Two-body and impulsive approximations are utilized to study dynamical friction, drag force, tidal stripping, tidal radii, globular-cluster swapping, tidal accretion, and galactic cannibalism. The evolution of galaxies and the collision of galaxies are simulated numerically; the steps involved in the simulation are described. The simulated data are compared with observations. Consideration is given to the number of galaxies, halo extension, location of the galaxies, distribution of the missing mass, nonequilibrium initial conditions, mass dependence, massive central galaxies, globular-cluster distribution, and lost globular clusters. 116 references.

  5. Sap flow measurements of lateral tree roots in agroforestry systems.

    Science.gov (United States)

    Lott, J. E.; Khan, A. A. H.; Ong, C. K.; Black, C. R.

    1996-01-01

    Successful extension of agroforestry to areas of the semi-arid tropics where deep reserves of water exist requires that the tree species be complementary to the associated crops in their use of water within the crop rooting zone. However, it is difficult to identify trees suitable for dryland agroforestry because most existing techniques for determining water uptake by roots cannot distinguish between absorption by tree and crop roots. We describe a method for measuring sap flow through lateral roots using constant temperature heat balance gauges, and the application of this method in a study of complementarity of water use in agroforestry systems containing Grevillea robusta A. Cunn. Sap flow gauges were attached to the trunks and roots of Grevillea with minimum disturbance to the soil. Thermal energy emanating from the soil adversely affected the accuracy of sap flow gauges attached to the roots, with the result that the uncorrected values were up to eightfold greater than the true water uptake determined gravimetrically. This overestimation was eliminated by using a calibration method in which nonconducting excised root segments, with sap flow gauges attached, were placed adjacent to the live roots. The power consumption and temperature differentials of the excised roots were used to correct for external sources and internal losses of heat within the paired live root. The fraction of the total sap flow through individual trees supplied by the lateral roots varied greatly between trees of similar canopy size. Excision of all lateral roots, except for one to which a heat balance gauge was attached, did not significantly increase sap flow through the intact root, suggesting that it was functioning at near maximum capacity.

  6. How tree roots respond to drought

    Directory of Open Access Journals (Sweden)

    Ivano eBrunner

    2015-07-01

    Full Text Available The ongoing climate change is characterised by increased temperatures and altered precipitation patterns. In addition, there has been an increase in both the frequency and intensity of extreme climatic events such as drought. Episodes of drought induce a series of interconnected effects, all of which have the potential to alter the carbon balance of forest ecosystems profoundly at different scales of plant organisation and ecosystem functioning. During recent years, considerable progress has been made in the understanding of how aboveground parts of trees respond to drought and how these responses affect carbon assimilation. In contrast, processes of belowground parts are relatively underrepresented in research on climate change. In this review, we describe current knowledge about responses of tree roots to drought. Tree roots are capable of responding to drought through a variety of strategies that enable them to avoid and tolerate stress. Responses include root biomass adjustments, anatomical alterations, and physiological acclimations. The molecular mechanisms underlying these responses are characterized to some extent, and involve stress signalling and the induction of numerous genes, leading to the activation of tolerance pathways. In addition, mycorrhizas seem to play important protective roles. The current knowledge compiled in this review supports the view that tree roots are well equipped to withstand drought situations and maintain morphological and physiological functions as long as possible. Further, the reviewed literature demonstrates the important role of tree roots in the functioning of forest ecosystems and highlights the need for more research in this emerging field.

  7. Plant diversity effects on root decomposition in grasslands

    Science.gov (United States)

    Chen, Hongmei; Mommer, Liesje; van Ruijven, Jasper; de Kroon, Hans; Gessler, Arthur; Scherer-Lorenzen, Michael; Wirth, Christian; Weigelt, Alexandra

    2016-04-01

    Loss of plant diversity impairs ecosystem functioning. Compared to other well-studied processes, we know little about whether and how plant diversity affects root decomposition, which is limiting our knowledge on biodiversity-carbon cycling relationships in the soil. Plant diversity potentially affects root decomposition via two non-exclusive mechanisms: by providing roots of different substrate quality and/or by altering the soil decomposition environment. To disentangle these two mechanisms, three decomposition experiments using a litter-bag approach were conducted on experimental grassland plots differing in plant species richness, functional group richness and functional group composition (e.g. presence/absence of grasses, legumes, small herbs and tall herbs, the Jena Experiment). We studied: 1) root substrate quality effects by decomposing roots collected from the different experimental plant communities in one common plot; 2) soil decomposition environment effects by decomposing standard roots in all experimental plots; and 3) the overall plant diversity effects by decomposing community roots in their 'home' plots. Litter bags were installed in April 2014 and retrieved after 1, 2 and 4 months to determine the mass loss. We found that mass loss decreased with increasing plant species richness, but not with functional group richness in the three experiments. However, functional group presence significantly affected mass loss with primarily negative effects of the presence of grasses and positive effects of the presence of legumes and small herbs. Our results thus provide clear evidence that species richness has a strong negative effect on root decomposition via effects on both root substrate quality and soil decomposition environment. This negative plant diversity-root decomposition relationship may partly account for the positive effect of plant diversity on soil C stocks by reducing C loss in addition to increasing primary root productivity. However, to fully

  8. Partitional clustering algorithms

    CERN Document Server

    2015-01-01

    This book summarizes the state-of-the-art in partitional clustering. Clustering, the unsupervised classification of patterns into groups, is one of the most important tasks in exploratory data analysis. Primary goals of clustering include gaining insight into, classifying, and compressing data. Clustering has a long and rich history that spans a variety of scientific disciplines including anthropology, biology, medicine, psychology, statistics, mathematics, engineering, and computer science. As a result, numerous clustering algorithms have been proposed since the early 1950s. Among these algorithms, partitional (nonhierarchical) ones have found many applications, especially in engineering and computer science. This book provides coverage of consensus clustering, constrained clustering, large scale and/or high dimensional clustering, cluster validity, cluster visualization, and applications of clustering. Examines clustering as it applies to large and/or high-dimensional data sets commonly encountered in reali...

  9. Modernization typologies industrial clusters

    Directory of Open Access Journals (Sweden)

    Karapetian, Eduard

    2011-11-01

    Full Text Available Generalized theoretical approach to the criteria of industrial clusters. On this basis, a detailed typology of industrial cluster structures, which takes into account the peculiarities of the functioning of clusters in the domestic economy.

  10. Organic fertilization alters the community composition of root associated fungi in Pisum sativum

    DEFF Research Database (Denmark)

    Yu, L.; Nicolaisen, M.; Ravnskov, S.;

    2013-01-01

    Organic fertilization is well known to affect individual functional groups of root associated fungi such as arbuscular mycorrhizal (AM) fungi and root pathogens, but limited information is available on the effect of organic fertilization at the fungal community composition level. The main objecti......, the organic fertilizer Protamylasse clearly affects communities of root associated fungi, which seems to be linked to the life strategy of the different functional groups of root associated fungi. --------------------------------------------------------------------------------......Organic fertilization is well known to affect individual functional groups of root associated fungi such as arbuscular mycorrhizal (AM) fungi and root pathogens, but limited information is available on the effect of organic fertilization at the fungal community composition level. The main objective...... of the present study was to examine the response of communities of root associated fungi in Pisum sativum to Protamylasse, an organic fertilizer used in pea production. Plants were grown in pots with field soil amended with four different levels of Protamylasse. 454 pyrosequencing was employed to examine...

  11. Effect of calmodulin antagonists on the growth and graviresponsiveness of primary roots of maize

    Science.gov (United States)

    Stinemetz, C. L.; Hasenstein, K. H.; Young, L. M.; Evans, M. L.

    1992-01-01

    We examined the effect of calmodulin (CaM) antagonists applied at the root tip on root growth, gravity-induced root curvature, and the movement of calcium across the root tip and auxin (IAA) across the elongation zone of gravistimulated roots. All of the CaM antagonists used in these studies delayed gravity-induced curvature at a concentration (1 micromole) that did not affect root growth. Calmodulin antagonists (> or = 1 micromole) inhibited downward transport of label from 45Ca2+ across the caps of gravistimulated roots relative to the downward transport of 45Ca2+ in gravistimulated roots which were not treated with CaM antagonists. Application of CaM antagonists at the root tip (> or = 1 micromole) also decreased the relative downward movement of label from 3H-IAA applied to the upper side of the elongation zone of gravistimulated roots. In general, tip application of antagonists inhibited neither the upward transport of 45Ca2+ in the root tip nor the upward movement of label from 3H-IAA in the elongation zone of gravistimulated roots. Thus, roots treated with CaM antagonists > or = 1 micromole become less graviresponsive and exhibit reduced or even a reversal of downward polarity of calcium transport across the root tip and IAA transport across the elongation zone. The results indicate that calmodulin-regulated events play a role in root gravitropism.

  12. Statistical modeling of nitrogen-dependent modulation of root system architecture in Arabidopsis thaliana

    Institute of Scientific and Technical Information of China (English)

    Takao Araya; Takuya Kubo; Nicolaus von Wiren; Hideki Takahashi

    2016-01-01

    Plant root development is strongly affected by nutrient availability. Despite the importance of structure and function of roots in nutrient acquisition, statistical modeling approaches to evaluate dynamic and temporal modulations of root system architecture in response to nutrient availability have remained as widely open and exploratory areas in root biology. In this study, we developed a statistical modeling approach to investigate modulations of root system archi-tecture in response to nitrogen availability. Mathematical models were designed for quantitative assessment of root growth and root branching phenotypes and their dynamic relationships based on hierarchical configuration of primary and lateral roots formulating the fishbone-shaped root system architecture in Arabidopsis thaliana. Time-series datasets reporting dynamic changes in root developmental traits on different nitrate or ammonium concentrations were gener-ated for statistical analyses. Regression analyses unraveled key parameters associated with:(i) inhibition of primary root growth under nitrogen limitation or on ammonium;(i ) rapid progression of lateral root emergence in response to ammonium; and (i i) inhibition of lateral root elongation in the presence of excess nitrate or ammonium. This study provides a statistical framework for interpreting dynamic modulation of root system architecture, supported by meta-analysis of datasets displaying morphological responses of roots to diverse nitrogen supplies.

  13. Identification of Putative Molecular Markers Associated with Root Traits in Coffea canephora Pierre ex Froehner

    Directory of Open Access Journals (Sweden)

    Devaraja Achar

    2015-01-01

    Full Text Available Coffea canephora exhibit poor root system and are very sensitive to drought stress that affects growth and production. Deeper root system has been largely empirical as better avoidance to soil water limitation in drought condition. The present study aimed to identify molecular markers linked to high root types in Coffea canephora using molecular markers. Contrasting parents, L1 valley with low root and S.3334 with high root type, were crossed, and 134 F1 individuals were phenotyped for root and associated physiological traits (29 traits and genotyped with 41 of the 320 RAPD and 9 of the 55 SSR polymorphic primers. Single marker analysis was deployed for detecting the association of markers linked to root associated traits by SAS software. There were 13 putative RAPD markers associated with root traits such as root length, secondary roots, root dry weight, and root to shoot ratio, in which root length associated marker OPS1850 showed high phenotypic variance of 6.86%. Two microsatellite markers linked to root length (CPCM13400 and root to shoot ratio (CM211300. Besides, 25 markers were associated with more than one trait and few of the markers were associated with positively related physiological traits and can be used in marker assisted trait selection.

  14. Root responses of grassland species to spatial heterogeneity of plant-soil feedback

    OpenAIRE

    Hendriks, Marloes; Visser, Eric J. W.; Visschers, Isabella G. S.; Aarts, Bart H. J.; de Caluwe, Hannie; Smit-Tiekstra, Annemiek E.; van der Putten, Wim H.; de Kroon, Hans; MOMMER, LIESJE

    2015-01-01

    Plant roots selectively forage for soil nutrients when these are heterogeneously distributed. In turn, effects of plant roots on biotic and abiotic conditions in the soil, which result in so-called plant–soil feedback can be heterogeneously distributed as well, but it is unknown how this heterogeneity affects root distribution, nutrient uptake and plant biomass production. Here, we investigate plant root distribution patterns as influenced by spatial heterogeneity of plant–soil feedback in so...

  15. Dipole oscillation modes in light α -clustering nuclei

    Science.gov (United States)

    He, W. B.; Ma, Y. G.; Cao, X. G.; Cai, X. Z.; Zhang, G. Q.

    2016-07-01

    The α cluster states are discussed in a model frame of extended quantum molecular dynamics. Different α cluster structures are studied in detail, such as 8Be two-α cluster structure, 12C triangle structure, 12 chain structure, 16O chain structure, 16O kite structure, and 16O square structure. The properties studied include the width of wave packets for different α clusters, momentum distribution, and the binding energy among α clusters. We also discuss how the α cluster degree of freedom affects nuclear collective vibrations. The cluster configurations in 12C and 16O are found to have corresponding characteristic spectra of giant dipole resonance (GDR), and the coherences of different α clusters' dipole oscillations are described in detail. The geometrical and dynamical symmetries of α -clustering configurations are responsible for the number and centroid energies of peaks of GDR spectra. Therefore, the GDR can be regarded as an effective probe to diagnose different α cluster configurations in light nuclei.

  16. NEO-FFI personality clusters in trichotillomania.

    Science.gov (United States)

    Keuthen, Nancy J; Tung, Esther S; Tung, Matthew G; Curley, Erin E; Flessner, Christopher A

    2016-05-30

    The purpose of this study was to determine whether personality prototypes exist among hair pullers and if these groups differ in hair pulling (HP) characteristics, clinical correlates, and quality of life. 164 adult hair pullers completed the NEO-Five Factor Inventory (NEO-FFI; Costa and McCrae, 1992) and self-report measures of HP severity, HP style, affective state, and quality of life. A latent class cluster analysis using NEO-FFI scores was performed to separate participants into clusters. Bonferroni-corrected t-tests were used to compare clusters on HP, affective, and quality of life variables. Multiple regression was used to determine which variables significantly predicted quality of life. Two distinct personality prototypes were identified. Cluster 1 (n=96) had higher neuroticism and lower extraversion, agreeableness, and conscientiousness when compared to cluster 2 (n=68). No significant differences in demographics were reported for the two personality clusters. The clusters differed on extent of focused HP, severity of depression, anxiety, and stress, as well as quality of life. Those in cluster 1 endorsed greater depression, anxiety, and stress, and worse quality of life. Additionally, only depression and cluster membership (based on NEO scores) significantly predicted quality of life. PMID:27016621

  17. Globular Clusters in the Galactic Bulge

    Science.gov (United States)

    Bica, E.; Ortolani, S.; Barbuy, B.

    2016-06-01

    A view of the Galactic bulge by means of their globular clusters is fundamental for a deep understanding of its formation and evolution. Connections between the globular cluster and field star properties in terms of kinematics, orbits, chemical abundances, and ages should shed light on different stellar population components. Based on spatial distribution and metallicity, we define a probable best list of bulge clusters, containing 43 entries. Future work on newly discovered objects, mostly from the VVV survey, is suggested. These candidates might alleviate the issue of missing clusters on the far side of the bulge. We discuss the reddening law affecting the cluster distances towards the centre of the Galaxy, and conclude that the most suitable total-to-selective absorption value appears to be R V=3.2, in agreement with recent analyses. An update of elemental abundances for bulge clusters is provided.

  18. Variation in root wood anatomy

    NARCIS (Netherlands)

    Cutler, D.F.

    1976-01-01

    Variability in the anatomy of root wood of selected specimens particularly Fraxinus excelsior L. and Acer pseudoplatanus L. in the Kew reference microscope slide collection is discussed in relation to generalised statements in the literature on root wood anatomy.

  19. Cytokinin-induced promotion of root meristem size in the fern Azolla supports a shoot-like origin of euphyllophyte roots.

    Science.gov (United States)

    de Vries, Jan; Fischer, Angela Melanie; Roettger, Mayo; Rommel, Sophie; Schluepmann, Henriette; Bräutigam, Andrea; Carlsbecker, Annelie; Gould, Sven Bernhard

    2016-01-01

    The phytohormones cytokinin and auxin orchestrate the root meristem development in angiosperms by determining embryonic bipolarity. Ferns, having the most basal euphyllophyte root, form neither bipolar embryos nor permanent embryonic primary roots but rather an adventitious root system. This raises the questions of how auxin and cytokinin govern fern root system architecture and whether this can tell us something about the origin of that root. Using Azolla filiculoides, we characterized the influence of IAA and zeatin on adventitious fern root meristems and vasculature by Nomarski microscopy. Simultaneously, RNAseq analyses, yielding 36,091 contigs, were used to uncover how the phytohormones affect root tip gene expression. We show that auxin restricts Azolla root meristem development, while cytokinin promotes it; it is the opposite effect of what is observed in Arabidopsis. Global gene expression profiling uncovered 145 genes significantly regulated by cytokinin or auxin, including cell wall modulators, cell division regulators and lateral root formation coordinators. Our data illuminate both evolution and development of fern roots. Promotion of meristem size through cytokinin supports the idea that root meristems of euphyllophytes evolved from shoot meristems. The foundation of these roots was laid in a postembryonically branching shoot system. PMID:26358624

  20. The cluster variety face of quantum groups

    CERN Document Server

    Popolitov, Alexandr

    2014-01-01

    Using the well-known free-field formalism for quantum groups, we demonstrate in case of $A(n)_q$, that quantum group is naturally also a cluster variety. Widely used formulae for mutations are direct consequence of independence of group element on the order of simple roots. Usual formulae for $2 n$ Poisson leaf emerge in classical limit, if all but few ($2n$) coordinates vanish.

  1. Factorial PD-Clustering

    CERN Document Server

    Tortora, Cristina; Summa, Mireille Gettler

    2011-01-01

    Factorial clustering methods have been developed in recent years thanks to the improving of computational power. These methods perform a linear transformation of data and a clustering on transformed data optimizing a common criterion. Factorial PD-clustering is based on Probabilistic Distance clustering (PD-clustering). PD-clustering is an iterative, distribution free, probabilistic, clustering method. Factorial PD-clustering make a linear transformation of original variables into a reduced number of orthogonal ones using a common criterion with PD-Clustering. It is demonstrated that Tucker 3 decomposition allows to obtain this transformation. Factorial PD-clustering makes alternatively a Tucker 3 decomposition and a PD-clustering on transformed data until convergence. This method could significantly improve the algorithm performance and allows to work with large dataset, to improve the stability and the robustness of the method.

  2. Advances in root reinforcement experiments

    Science.gov (United States)

    Giadrossich, Filippo; Schwarz, Massimiliano; Niedda, Marcello

    2013-04-01

    Root reinforcement is considered in many situations an important effect of vegetation for slope stability. In the past 20 years many studies analyzed root reinforcement in laboratory and field experiments, as well as through modeling frameworks. Nearby the important contribution of roots to shear strength, roots are recognized to impart stabilization also through lateral (parallel to slope) redistribution of forces under tension. Lateral root reinforcement under tensile solicitations (such as in the upper part of a shallow landslide) was documented and discussed by some studies. The most common method adopted to measure lateral root reinforcement are pullout tests where roots (single or as bundle) are pulled out from a soil matrix. These conditions are indeed representative for the case where roots within the mass of a landslide slip out from the upper stable part of the slope (such in a tension crack). However, there is also the situation where roots anchored at the upper stable part of the slope slip out from the sliding soil mass. In this last case it is difficult to quantify root reinforcement and no study discussed this mechanism so far. The main objective of this study is to quantify the contribution of roots considering the two presented cases of lateral root reinforcement discussed above - roots slipping out from stable soil profile or sliding soil matrix from anchored roots-, and discuss the implication of the results for slope stability modeling. We carried out a series of laboratory experiments for both roots pullout and soil sliding mechanisms using a tilting box with a bundle of 15 roots. Both Douglas (Pseudotsuga menziesii) roots and soil were collected from the study area in Sardinia (Italy), and reconstructed in laboratory, filling the root and soil layer by layer up to 0.4 meter thickness. The results show that the ratio between pullout force and force transferred to the root during soil sliding range from 0.5 to 1. This results indicate that

  3. Artificial Root Exudate System (ARES): a field approach to simulate tree root exudation in soils

    Science.gov (United States)

    Lopez-Sangil, Luis; Estradera-Gumbau, Eduard; George, Charles; Sayer, Emma

    2016-04-01

    The exudation of labile solutes by fine roots represents an important strategy for plants to promote soil nutrient availability in terrestrial ecosystems. Compounds exuded by roots (mainly sugars, carboxylic and amino acids) provide energy to soil microbes, thus priming the mineralization of soil organic matter (SOM) and the consequent release of inorganic nutrients into the rhizosphere. Studies in several forest ecosystems suggest that tree root exudates represent 1 to 10% of the total photoassimilated C, with exudation rates increasing markedly under elevated CO2 scenarios. Despite their importance in ecosystem functioning, we know little about how tree root exudation affect soil carbon dynamics in situ. This is mainly because there has been no viable method to experimentally control inputs of root exudates at field scale. Here, I present a method to apply artificial root exudates below the soil surface in small field plots. The artificial root exudate system (ARES) consists of a water container with a mixture of labile carbon solutes (mimicking tree root exudate rates and composition), which feeds a system of drip-tips covering an area of 1 m2. The tips are evenly distributed every 20 cm and inserted 4-cm into the soil with minimal disturbance. The system is regulated by a mechanical timer, such that artificial root exudate solution can be applied at frequent, regular daily intervals. We tested ARES from April to September 2015 (growing season) within a leaf-litter manipulation experiment ongoing in temperate deciduous woodland in the UK. Soil respiration was measured monthly, and soil samples were taken at the end of the growing season for PLFA, enzymatic activity and nutrient analyses. First results show a very rapid mineralization of the root exudate compounds and, interestingly, long-term increases in SOM respiration, with negligible effects on soil moisture levels. Large positive priming effects (2.5-fold increase in soil respiration during the growing

  4. Possibilistic Exponential Fuzzy Clustering

    Institute of Scientific and Technical Information of China (English)

    Kiatichai Treerattanapitak; Chuleerat Jaruskulchai

    2013-01-01

    Generally,abnormal points (noise and outliers) cause cluster analysis to produce low accuracy especially in fuzzy clustering.These data not only stay in clusters but also deviate the centroids from their true positions.Traditional fuzzy clustering like Fuzzy C-Means (FCM) always assigns data to all clusters which is not reasonable in some circumstances.By reformulating objective function in exponential equation,the algorithm aggressively selects data into the clusters.However noisy data and outliers cannot be properly handled by clustering process therefore they are forced to be included in a cluster because of a general probabilistic constraint that the sum of the membership degrees across all clusters is one.In order to improve this weakness,possibilistic approach relaxes this condition to improve membership assignment.Nevertheless,possibilistic clustering algorithms generally suffer from coincident clusters because their membership equations ignore the distance to other clusters.Although there are some possibilistic clustering approaches that do not generate coincident clusters,most of them require the right combination of multiple parameters for the algorithms to work.In this paper,we theoretically study Possibilistic Exponential Fuzzy Clustering (PXFCM) that integrates possibilistic approach with exponential fuzzy clustering.PXFCM has only one parameter and not only partitions the data but also filters noisy data or detects them as outliers.The comprehensive experiments show that PXFCM produces high accuracy in both clustering results and outlier detection without generating coincident problems.

  5. The Gaudi Framework and ROOT

    CERN Document Server

    Couturier, B; Clemencic, M

    2013-01-01

    The Gaudi framework, at the core of LHCb applications, relies on many features of ROOT, from the Mathematical libraries, to the tools for reflection and persistency. While Gaudi's architecture is under review in order to fulfill the LHCb computing requirements after LS1 and upgrade, significant changes are also announced for ROOT 6. This talk will review the usage of ROOT within Gaudi and LHCb applications, in order to present the features needed by LHCb to migrate to the new ROOT.

  6. Root canal retained restorations: 3. Root-face attachments.

    Science.gov (United States)

    Dummer, P M; Edmunds, D H; Gidden, J R

    1990-10-01

    It has been common practice for many years to use retained roots to provide support and stability for partial or full dentures. The retention of such overdentures is greatly enhanced if the remaining roots are modified and restored with posts and root-face attachments. The final article in this series on root canal retained restorations classifies and describes some of the root-face attachments currently available, and also describes a number of prefabricated post systems with integral overdenture attachments. Guidelines for clinical and laboratory procedures are given. PMID:2097234

  7. Negative phototropism of rice root

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    @@It is often believed that the stem of higher plants has characteristics of positive phototropism, and the root shows no phototropism or no sensitivity to light though the root of Arabdopsis was reported possessing characteristics of negative phototropism. In this study, a distinct negative phototropism of the root system of rice seedlings was observed.

  8. Diagravitropism in corn roots

    Science.gov (United States)

    Leopold, A. C.; Wettlaufer, S. H.

    1988-01-01

    The diagravitropic behavior of Merit corn (Zea mays L.) roots grown in darkness provides an opportunity for comparison of two qualitatively different gravitropic systems. As with positive gravitropism, diagravitropism is shown to require the presence of the root cap, have a similar time course for the onset of curvature, and a similar presentation time. In contrast with positive gravitropism, diagravitropism appears to have a more limited requirement for calcium, for it is insensitive to the elution of calcium by EGTA and insensitive to the subsequent addition of a calcium/EGTA complex. These results are interpreted as indicating that whereas the same sensing system is shared by the two types of gravitropism, separate transductive systems are involved, one for diagravitropism, which is relatively independent of calcium, and one for positive gravitropism, which is markedly dependent on calcium.

  9. Roots of Financial Literacy

    OpenAIRE

    Grohmann, Antonia; Kouwenberg, Roy; Menkhoff, Lukas

    2014-01-01

    Our study aims to uncover the roots of financial literacy. Better financial literacy predicts more informed savings and borrowing decisions in our sample, covering the urban middle-class in an emerging economy. We then test education at school, family background, parental teaching, and childhood experiences with money as potential determinants of financial literacy. In addition to risk tolerance and having basic numeracy skills, we find that family variables matter most, in particular better ...

  10. Mental Roots of Terror

    OpenAIRE

    Saruhan, Müfit Selim

    2004-01-01

    In this article, I deal with mental and terror relationship. Mental roots of terror are being examined. Religion has nothing to do with terrorism. Terrorist tries to misuse religion. Mental with prejudice and lack of knowledge occupies the personality of individual and his ability to judge. Purification of mind from any external and internal prejudices is the unique solution of terrorism. Only within extensive education we can overcome terrorism. Terrorism could not apply to a religion or a n...

  11. Factors influencing the future need for treatment of root surfaces.

    Science.gov (United States)

    Ettinger, R L; Hand, J S

    1994-10-01

    This paper discusses the current status of root surface caries in the elderly population and the need for treatment of this condition in the future. Although root surface exposure and root caries have been reported for adults at all ages, the people at greatest risk for these conditions are the elderly. In the United States, life expectancy and the population aged 65 years and older has increased substantially, and the proportion of the elderly population who are dentate has increased and is projected to increase further. Utilization of dental services by the elderly is similar to that of employed adults. Interpretation of studies of the prevalence and incidence of root surface caries are difficult due to differences in sampling, definition of lesions, and reporting conventions. Root surface caries prevalence is related to age and continues to be a significant problem for this population as they age. Factors that may affect the future need for treatment are explored. PMID:7986448

  12. Management of cluster headache

    DEFF Research Database (Denmark)

    Tfelt-Hansen, Peer C; Jensen, Rigmor H

    2012-01-01

    and agitation. Patients may have up to eight attacks per day. Episodic cluster headache (ECH) occurs in clusters of weeks to months duration, whereas chronic cluster headache (CCH) attacks occur for more than 1 year without remissions. Management of cluster headache is divided into acute attack treatment...

  13. Structures of Mn clusters

    Indian Academy of Sciences (India)

    Tina M Briere; Marcel H F Sluiter; Vijay Kumar; Yoshiyuki Kawazoe

    2003-01-01

    The geometries of several Mn clusters in the size range Mn13–Mn23 are studied via the generalized gradient approximation to density functional theory. For the 13- and 19-atom clusters, the icosahedral structures are found to be most stable, while for the 15-atom cluster, the bcc structure is more favoured. The clusters show ferrimagnetic spin configurations.

  14. 集群内中小企业信贷融资因素分析——基于常州三个产业集群的实证%Analysis on Factors Affecting Credit Financing by SMEs within Industrial Clusters——Based on Three Industrial Clusters in Changzhou

    Institute of Scientific and Technical Information of China (English)

    马鸿杰; 胡汉辉

    2009-01-01

    The paper firstly makes an empirical analysis on factors affecting credit financing by small and medium enterprises (SME) within an industrial duster. The analysis is based on data collected from three industrial clus-ters in Changzhou, i.e. the textile industry in Hutang, floor production in Henglin and lamp manufacturing in Zouqu. It is found that profitability, mortgage abundance and cluster degree are important factor affecting financing capability of SMEs. Secondly, through making eointegration test between the duster degree and the financing ca-pability of SMEs, the paper focuses on analyzing financing advantages of SMEs from the perspectives of reputation importance, information sharing enterprise cooperation and credit risks. Finally, it concludes that financing prob-lems facing SMEs may be solved by developing industrial clusters of SMEs.%以常州湖塘纺织、横林地板、邹区灯具三大集群为例,首先分析了群内中小企业的信贷融资因素,得出企业的盈利能力、有无充足抵押物、企业所在地产业集群化程度是影响中小企业信贷融资能力的重要因素;其次通过对集群化程度与企业信贷融资能力协整检验后,重点从集群的信誉重要性、信息共享、企业合作、信贷风险等方面分析群内中小企业的融资优势;最后分析得出可以通过中小企业的集群化发展破解中小企业融资难的困境.

  15. Coral: an integrated suite of visualizations for comparing clusterings

    Directory of Open Access Journals (Sweden)

    Filippova Darya

    2012-10-01

    Full Text Available Abstract Background Clustering has become a standard analysis for many types of biological data (e.g interaction networks, gene expression, metagenomic abundance. In practice, it is possible to obtain a large number of contradictory clusterings by varying which clustering algorithm is used, which data attributes are considered, how algorithmic parameters are set, and which near-optimal clusterings are chosen. It is a difficult task to sift though such a large collection of varied clusterings to determine which clustering features are affected by parameter settings or are artifacts of particular algorithms and which represent meaningful patterns. Knowing which items are often clustered together helps to improve our understanding of the underlying data and to increase our confidence about generated modules. Results We present Coral, an application for interactive exploration of large ensembles of clusterings. Coral makes all-to-all clustering comparison easy, supports exploration of individual clusterings, allows tracking modules across clusterings, and supports identification of core and peripheral items in modules. We discuss how each visual component in Coral tackles a specific question related to clustering comparison and provide examples of their use. We also show how Coral could be used to visually and quantitatively compare clusterings with a ground truth clustering. Conclusion As a case study, we compare clusterings of a recently published protein interaction network of Arabidopsis thaliana. We use several popular algorithms to generate the network’s clusterings. We find that the clusterings vary significantly and that few proteins are consistently co-clustered in all clusterings. This is evidence that several clusterings should typically be considered when evaluating modules of genes, proteins, or sequences, and Coral can be used to perform a comprehensive analysis of these clustering ensembles.

  16. Do roots mind the gap?

    OpenAIRE

    A. Carminati; Vetterlein, D; Koebernick, N.; Blaser, S; Weller, U; Vogel, H.-J.

    2012-01-01

    Roots need to be in good contact with the soil to take up water and nutrients. However, when the soil dries and roots shrink, air-filled gaps form at the root-soil interface. Do gaps actually limit the root water uptake, or do they form after water flow in soil is already limiting?Four white lupins were grown in cylinders of 20 cm height and 8 cm diameter. The dynamics of root and soil structure were recorded using X-ray CT at regular intervals during one drying/wetting cycle. Tensiometers we...

  17. Graded cluster algebras

    OpenAIRE

    Grabowski, Jan

    2015-01-01

    In the cluster algebra literature, the notion of a graded cluster algebra has been implicit since the origin of the subject. In this work, we wish to bring this aspect of cluster algebra theory to the foreground and promote its study. We transfer a definition of Gekhtman, Shapiro and Vainshtein to the algebraic setting, yielding the notion of a multi-graded cluster algebra. We then study gradings for finite type cluster algebras without coefficients, giving a full classification. Translating ...

  18. An analytical fiber bundle model for pullout mechanics of root bundles

    Science.gov (United States)

    Cohen, D.; Schwarz, M.; Or, D.

    2011-09-01

    Roots in soil contribute to the mechanical stability of slopes. Estimation of root reinforcement is challenging because roots form complex biological networks whose geometrical and mechanical characteristics are difficult to characterize. Here we describe an analytical model that builds on simple root descriptors to estimate root reinforcement. Root bundles are modeled as bundles of heterogeneous fibers pulled along their long axes neglecting root-soil friction. Analytical expressions for the pullout force as a function of displacement are derived. The maximum pullout force and corresponding critical displacement are either derived analytically or computed numerically. Key model inputs are a root diameter distribution (uniform, Weibull, or lognormal) and three empirical power law relations describing tensile strength, elastic modulus, and length of roots as functions of root diameter. When a root bundle with root tips anchored in the soil matrix is pulled by a rigid plate, a unique parameter, ?, that depends only on the exponents of the power law relations, dictates the order in which roots of different diameters break. If ? 1, large roots break first. When ? = 1, all fibers break simultaneously, and the maximum tensile force is simply the roots' mean force times the number of roots in the bundle. Based on measurements of root geometry and mechanical properties, the value of ? is less than 1, usually ranging between 0 and 0.7. Thus, small roots always fail first. The model shows how geometrical and mechanical characteristics of roots and root diameter distribution affect the pullout force, its maximum and corresponding displacement. Comparing bundles of roots that have similar mean diameters, a bundle with a narrow variance in root diameter will result in a larger maximum force and a smaller displacement at maximum force than a bundle with a wide diameter distribution. Increasing the mean root diameter of a bundle without changing the distribution's shape increases

  19. [An analysis of key points for root canal therapy technique].

    Science.gov (United States)

    Fan, M W

    2016-08-01

    The success rate of root canal therapy(RCT)have been improved continuously along with the advancement in RCT techniques in the past several decades. If standard procedures of modern RCT techniques are strictly followed, the success rate of RCT may exceed 90%. The success of RCT is mainly affected by such factors as clear concept of the anatomy of root canals, proper mechanical and chemical preparation and perfect filling of root canal system. If these factors are sufficiently noted, a success is easy to achieve. Even though the primary RCT fails, retreatment can further be conducted to save the diseased teeth. PMID:27511032

  20. The Importance of Juvenile Root Traits for Crop Yields

    Science.gov (United States)

    White, Philip; Adu, Michael; Broadley, Martin; Brown, Lawrie; Dupuy, Lionel; George, Timothy; Graham, Neil; Hammond, John; Hayden, Rory; Neugebauer, Konrad; Nightingale, Mark; Ramsay, Gavin; Thomas, Catherine; Thompson, Jacqueline; Wishart, Jane; Wright, Gladys

    2014-05-01

    Genetic variation in root system architecture (RSA) is an under-exploited breeding resource. This is partly a consequence of difficulties in the rapid and accurate assessment of subterranean root systems. However, although the characterisation of root systems of large plants in the field are both time-consuming and labour-intensive, high-throughput (HTP) screens of root systems of juvenile plants can be performed in the field, glasshouse or laboratory. It is hypothesised that improving the root systems of juvenile plants can accelerate access to water and essential mineral elements, leading to rapid crop establishment and, consequently, greater yields. This presentation will illustrate how aspects of the juvenile root systems of potato (Solanum tuberosum L.) and oilseed rape (OSR; Brassica napus L.) correlate with crop yields and examine the reasons for such correlations. It will first describe the significant positive relationships between early root system development, phosphorus acquisition, canopy establishment and eventual yield among potato genotypes. It will report the development of a glasshouse assay for root system architecture (RSA) of juvenile potato plants, the correlations between root system architectures measured in the glasshouse and field, and the relationships between aspects of the juvenile root system and crop yields under drought conditions. It will then describe the development of HTP systems for assaying RSA of OSR seedlings, the identification of genetic loci affecting RSA in OSR, the development of mathematical models describing resource acquisition by OSR, and the correlations between root traits recorded in the HTP systems and yields of OSR in the field.

  1. Dipole oscillation modes in $\\alpha$-clustering light nuclei

    CERN Document Server

    He, W B; Cao, X G; Cai, X Z; Zhang, G Q

    2016-01-01

    The alpha cluster states are discussed in an extended quantum molecular dynamics (EQMD) model frame. Different alpha cluster structures are studied in details, such as $^8$Be two-alpha cluster structure, $^{12}$C triangle structure, $^{12}$C chain structure, $^{16}$O chain structure, $^{16}$O kite structure, and $^{16}$O square structure. The properties like width of wave packets for different alpha clusters, momentum distribution, and the binding energy among alpha clusters are studied. It is also discussed how the $\\alpha$ cluster degree of freedom affects nuclear collective vibrations. The different $\\alpha$ cluster configurations in $^{12}$C and $^{16}$O have corresponding characteristic spectra of GDR and the coherence of different alpha clusters's dipole oscillation are described in details. The number and centroid energies of peaks in the GDR spectra can be reasonably explained by the geometrical and dynamical symmetries of $\\alpha$-clustering configurations. The GDR can be regarded as a very effective...

  2. Affective Urbanism

    DEFF Research Database (Denmark)

    Samson, Kristine

    . Under these circumstances affective aesthetics operate strategically within the urban field of interests, capital flows and desires of the social. This ‘affective urbanism’ (Anderson & Holden 2008) is linked to a society influenced by new kinds of information flows, where culture is mediated and enacted...... and cultural festivals, both practices indicate that design is implemented as means of creating affective spaces in the city. Both cases show how immaterial production of affects and emotions in the city can be seen in relation to economic potential and urban development. Finally, I will discuss whether urban......Urban design and architecture are increasingly used as material and affective strategies for setting the scene, for manipulation and the production of urban life: The orchestration of atmospheres, the framing and staging of urban actions, the programming for contemplation, involvement, play...

  3. Improvement of adventitious root formation in flax using hydrogen peroxide.

    Science.gov (United States)

    Takáč, Tomáš; Obert, Bohuš; Rolčík, Jakub; Šamaj, Jozef

    2016-09-25

    Flax (Linum usitatissimum L.) is an important crop for the production of oil and fiber. In vitro manipulations of flax are used for genetic improvement and breeding while improvements in adventitious root formation are important for biotechnological programs focused on regeneration and vegetative propagation of genetically valuable plant material. Additionally, flax hypocotyl segments possess outstanding morphogenetic capacity, thus providing a useful model for the investigation of flax developmental processes. Here, we investigated the crosstalk between hydrogen peroxide and auxin with respect to reprogramming flax hypocotyl cells for root morphogenetic development. Exogenous auxin induced the robust formation of adventitious roots from flax hypocotyl segments while the addition of hydrogen peroxide further enhanced this process. The levels of endogenous auxin (indole-3-acetic acid; IAA) were positively correlated with increased root formation in response to exogenous auxin (1-Naphthaleneacetic acid; NAA). Histochemical staining of the hypocotyl segments revealed that hydrogen peroxide and peroxidase, but not superoxide, were positively correlated with root formation. Measurements of antioxidant enzyme activities showed that endogenous levels of hydrogen peroxide were controlled by peroxidases during root formation from hypocotyl segments. In conclusion, hydrogen peroxide positively affected flax adventitious root formation by regulating the endogenous auxin levels. Consequently, this agent can be applied to increase flax regeneration capacity for biotechnological purposes such as improved plant rooting. PMID:26921706

  4. Sodium efflux in plant roots: what do we really know?

    Science.gov (United States)

    Britto, D T; Kronzucker, H J

    2015-08-15

    The efflux of sodium (Na(+)) ions across the plasma membrane of plant root cells into the external medium is surprisingly poorly understood. Nevertheless, Na(+) efflux is widely regarded as a major mechanism by which plants restrain the rise of Na(+) concentrations in the cytosolic compartments of root cells and, thus, achieve a degree of tolerance to saline environments. In this review, several key ideas and bodies of evidence concerning root Na(+) efflux are summarized with a critical eye. Findings from decades past are brought to bear on current thinking, and pivotal studies are discussed, both "purely physiological", and also with regard to the SOS1 protein, the only major Na(+) efflux transporter that has, to date, been genetically characterized. We find that the current model of rapid transmembrane sodium cycling (RTSC), across the plasma membrane of root cells, is not adequately supported by evidence from the majority of efflux studies. An alternative hypothesis cannot be ruled out, that most Na(+) tracer efflux from the root in the salinity range does not proceed across the plasma membrane, but through the apoplast. Support for this idea comes from studies showing that Na(+) efflux, when measured with tracers, is rarely affected by the presence of inhibitors or the ionic composition in saline rooting media. We conclude that the actual efflux of Na(+) across the plasma membrane of root cells may be much more modest than what is often reported in studies using tracers, and may predominantly occur in the root tips, where SOS1 expression has been localized.

  5. Analyses of Disrupted Supply Chains by the Great East Japan Earthquake and Reconstruction of the Disaster-affected Region by the Cluster of the Automotive Industry: Utilizing the regional CGE model (Japanese)

    OpenAIRE

    Tokunaga, Suminori; Okiyama, Mitsuru; Akune, Yuko

    2013-01-01

    The purpose of this paper is first to analyze a negative supply shock due to "disrupted supply chains" caused by the earthquake and, secondly, to examine which of the policies to reconstruct the disaster-affected region is the most advisable way to proceed with the accumulation of the automotive industry. Using the two-regional computable general equilibrium (CGE) model, we initially found that had the alternative production at other plants been very easy, even if the production volume of mot...

  6. Nonsurgical Endodontic Retreatment of Advanced Inflammatory External Root Resorption Using Mineral Trioxide Aggregate Obturation

    Directory of Open Access Journals (Sweden)

    Shivani Utneja

    2012-01-01

    Full Text Available Inflammatory external root resorption is one of the major complications after traumatic dental injury. In this case report, we describe treatment of a maxillary central incisor affected by severe, perforating external root resorption. An 18-year-old patient presented with a previously traumatized, root-filled maxillary central incisor associated with pain and sinus tract. Radiographic examination revealed periradicular lesion involving pathologic resorption of the apical region of the root and lateral root surface both mesially and distally. After removal of the root canal filling, the tooth was disinfected with intracanal triple antibiotic paste for 2 weeks. The antibiotic dressing was then removed, and the entire root canal was filled with mineral trioxide aggregate. The endodontic access cavity was restored with composite resin. After 18 months, significant osseous healing of the periradicular region and lateral periodontium had occurred with arrest of external root resorption, and no clinical symptoms were apparent.

  7. Oil Palm (Elaeis guineensis Roots Response to Mechanization in Bernam Series Soil

    Directory of Open Access Journals (Sweden)

    Zuraidah Yahya

    2010-01-01

    Full Text Available Problem statement: Field practices involving the use of mechanization in oil palm plantations could result in soil compaction which alters the soil physical properties. The gradual deterioration of soil physical conditions could restrict the growth and function of roots. This study was carried out to evaluate the response of oil palm roots to changes in soil physical properties due to mechanization in Bernam series soil belonging to the clay texture class. Approach: Compaction treatments were imposed for 6 consecutive years and a comparison was done on the effects of different trailer weights on oil palm roots growth. Roots and soil were sampled using root and soil augers at 0-30 cm depth from the harvesting and frond pile paths. Results: The results showed that the oil palm roots were affected by the mechanization treatments. Growth of oil palm roots was significantly affected by the 4T trailer weight. Palms in compacted soil produced less primary and secondary roots but this was compensated for by the production of longer and thicker tertiary and quaternary roots. Conclusion: The compaction treatments affect the soil physical properties, which in turn affect the growth and distribution of oil palm roots.

  8. Characteristic of root decomposition in a tropical rainforest in Sarawak, Malaysi

    Science.gov (United States)

    Ohashi, Mizue; Makita, Naoki; Katayam, Ayumi; Kume, Tomonori; Matsumoto, Kazuho; Khoon Kho, L.

    2016-04-01

    Woody roots play a significant role in forest carbon cycling, as up to 60 percent of tree photosynthetic production can be allocated to belowground. Root decay is one of the main processes of soil C dynamics and potentially relates to soil C sequestration. However, much less attention has been paid for root litter decomposition compared to the studies of leaf litter because roots are hidden from view. Previous studies have revealed that physico-chemical quality of roots, climate, and soil organisms affect root decomposition significantly. However, patterns and mechanisms of root decomposition are still poorly understood because of the high variability of root properties, field environment and potential decomposers. For example, root size would be a factor controlling decomposition rates, but general understanding of the difference between coarse and fine root decompositions is still lacking. Also, it is known that root decomposition is performed by soil animals, fungi and bacteria, but their relative importance is poorly understood. In this study, therefore, we aimed to characterize the root decomposition in a tropical rainforest in Sarawak, Malaysia, and clarify the impact of soil living organisms and root sizes on root litter decomposition. We buried soil cores with fine and coarse root litter bags in soil in Lambir Hills National Park. Three different types of soil cores that are covered by 1.5 cm plastic mesh, root-impermeable sheet (50um) and fungi-impermeable sheet (1um) were prepared. The soil cores were buried in February 2013 and collected 4 times, 134 days, 226 days, 786 days and 1151 days after the installation. We found that nearly 80 percent of the coarse root litter was decomposed after two years, whereas only 60 percent of the fine root litter was decomposed. Our results also showed significantly different ratio of decomposition between different cores, suggesting the different contribution of soil living organisms to decomposition process.

  9. Root Ecological Niche Index and Root Distribution Characteristics of Artificial Phytocommunities in Rehabilitated Fields

    Institute of Scientific and Technical Information of China (English)

    Hu Jianzhong; Zhen Jiali; Shen Jingyu

    2006-01-01

    In the implementation phase of the Conversion of Cropland to Forest and Grassland (CCFG) project in China,it is important,from a scientific point of view,to recognize phytocommunities' characteristics,species compatibility,and ecological function.The ecological niche that roots occupy,their abundance and distribution,and the factors that affect them must be acknowledged.Following the methodology of community ecology,the total root mass of a phytocommunity is measured as cubic volume.Root biomass,length,and the number of roots in every diameter class,for each soil layer and for each plant species,are regarded as observation variables.In the first instance therefore,a new method to calculate the root ecological niche index (REND is proposed,embracing the entire phytocommunity of plantations.Using the new method,the roots of pbytocommunities in Datong County,Qinghai Province (one of the counties selected for the national CCFG experiment),are dealt with in this paper.The results show that most of the vertical distributions of plant roots belong to the type wherein the roots are concentrated in the topsoil layer (0-20 cm),far more than those in the lower soil layers.The RENI of pbytocommunities is higher than that of pure stands or monocultures.The distribution of RENI by root diameter can be divided into four types:J-type,inverse J-type,recumbent S-type,and U-type.RENI is positively correlated with the wet biomass of aboveground level stems,branches,and plant leaves,and with the species richness of phytocommunities.Although the RENIs of plantations in rehabilitated fields are a little lower than those of natural forests,they are higher than those of cultivated crops.The RENIs of three community types (Picea crassifolia+Hippophae rhamnoides ssp.sinensis,H.rhamnoides ssp.sinensis,and P.crassifolia) in rehabilitated fields benefit greatly from the restoration project.The implementation of the CCFG project is important for the increase in RENI and the multiple functions of

  10. Water Deficit Enhances C Export to the Roots in Arabidopsis thaliana Plants with Contribution of Sucrose Transporters in Both Shoot and Roots.

    Science.gov (United States)

    Durand, Mickaël; Porcheron, Benoît; Hennion, Nils; Maurousset, Laurence; Lemoine, Rémi; Pourtau, Nathalie

    2016-03-01

    Root high plasticity is an adaptation to its changing environment. Water deficit impairs growth, leading to sugar accumulation in leaves, part of which could be available to roots via sucrose (Suc) phloem transport. Phloem loading is widely described in Arabidopsis (Arabidopsis thaliana), while unloading in roots is less understood. To gain information on leaf-to-root transport, a soil-based culture system was developed to monitor root system architecture in two dimensions. Under water deficit (50% of soil water-holding capacity), total root length was strongly reduced but the depth of root foraging and the shape of the root system were less affected, likely to improve water uptake. (14)CO2 pulse-chase experiments confirmed that water deficit enhanced carbon (C) export to the roots, as suggested by the increased root-to-shoot ratio. The transcript levels of AtSWEET11 (for sugar will eventually be exported transporter), AtSWEET12, and AtSUC2 (for Suc carrier) genes, all three involved in Suc phloem loading, were significantly up-regulated in leaves of water deficit plants, in accordance with the increase in C export from the leaves to the roots. Interestingly, the transcript levels of AtSUC2 and AtSWEET11 to AtSWEET15 were also significantly higher in stressed roots, underlying the importance of Suc apoplastic unloading in Arabidopsis roots and a putative role for these Suc transporters in Suc unloading. These data demonstrate that, during water deficit, plants respond to growth limitation by allocating relatively more C to the roots to maintain an efficient root system and that a subset of Suc transporters is potentially involved in the flux of C to and in the roots. PMID:26802041

  11. Philosophical Roots of Cosmology

    Science.gov (United States)

    Ivanovic, M.

    2008-10-01

    We shall consider the philosophical roots of cosmology in the earlier Greek philosophy. Our goal is to answer the question: Are earlier Greek theories of pure philosophical-mythological character, as often philosophers cited it, or they have scientific character. On the bases of methodological criteria, we shall contend that the latter is the case. In order to answer the question about contemporary situation of the relation philosophy-cosmology, we shall consider the next question: Is contemporary cosmology completely independent of philosophical conjectures? The answer demands consideration of methodological character about scientific status of contemporary cosmology. We also consider some aspects of the relation contemporary philosophy-cosmology.

  12. Clusters in strong laser fields: Comparison between carbon, platinum, and lead clusters

    Science.gov (United States)

    Schumacher, M.; Teuber, S.; Köller, L.; Köhn, J.; Tiggesbäumker, J.; Meiwes-Broer, K. H.

    Carbon and metal clusters are excited by strong femtosecond laser pulses with up to 1016 W/cm2, yielding ionized clusters and highly charged atomic ions. For small carbon clusters and fullerenes the abundance of charged species correlates with the laser power, while for metal clusters the ionization efficiency is additionally strongly affected by the chosen laser pulse width which may result in an enhanced up-charging of the metal particle. In the case of platinum atomic charge states up to z=20 are detected at a pulse duration of about 600 fs. This observation is in accordance with a model based on a multi-plasmon excitation process.

  13. Affective Maps

    DEFF Research Database (Denmark)

    Salovaara-Moring, Inka

    . In particular, mapping environmental damage, endangered species, and human made disasters has become one of the focal point of affective knowledge production. These ‘more-than-humangeographies’ practices include notions of species, space and territory, and movement towards a new political ecology. This type...... of environmental knowledge production. It uses InfoAmazonia, the databased platform on Amazon rainforests, as an example of affective geo-visualization within information mapping that enhances embodiment in the experience of the information. Amazonia is defined as a digitally created affective (map)space within...

  14. Cold Temperature Delays Wound Healing in Postharvest Sugarbeet Roots.

    Science.gov (United States)

    Fugate, Karen K; Ribeiro, Wellington S; Lulai, Edward C; Deckard, Edward L; Finger, Fernando L

    2016-01-01

    Storage temperature affects the rate and extent of wound-healing in a number of root and tuber crops. The effect of storage temperature on wound-healing in sugarbeet (Beta vulgaris L.) roots, however, is largely unknown. Wound-healing of sugarbeet roots was investigated using surface-abraded roots stored at 6 and 12°C for 28 days. Surface abrasions are common injuries of stored roots, and the storage temperatures used are typical of freshly harvested or rapidly cooled roots. Transpiration rate from the wounded surface and root weight loss were used to quantify wound healing. At 12°C, transpiration rate from the wounded surface declined within 14 days and wounded roots lost weight at a rate similar to unwounded controls. At 6°C, transpiration rate from the wounded surface did not decline in the 28 days after injury, and wounded roots lost 44% more weight than controls after 28 days storage. Melanin formation, lignification, and suberization occurred more rapidly at 12°C than at 6°C, and a continuous layer of lignified and suberized cells developed at 12°C, but not at 6°C. Examination of enzyme activities involved in melanin, lignin, and suberin formation indicated that differences in melanin formation at 6 and 12°C were related to differences in polyphenol oxidase activity, although no relationships between suberin or lignin formation and phenylalanine ammonia lyase or peroxidase activity were evident. Wound-induced respiration was initially greater at 12°C than at 6°C. However, with continued storage, respiration rate of wounded roots declined more rapidly at 12°C, and over 28 days, the increase in respiration due to injury was 52% greater in roots stored at 6°C than in roots stored at 12°C. The data indicate that storage at 6°C severely slowed and impaired wound-healing of surface-abraded sugarbeet roots relative to roots stored at 12°C and suggest that postharvest losses may be accelerated if freshly harvested roots are cooled too quickly. PMID

  15. Cold Temperature Delays Wound Healing in Postharvest Sugarbeet Roots

    Directory of Open Access Journals (Sweden)

    Karen Klotz Fugate

    2016-04-01

    Full Text Available Storage temperature affects the rate and extent of wound-healing in a number of root and tuber crops. The effect of storage temperature on wound-healing in sugarbeet (Beta vulgaris L. roots, however, is largely unknown. Wound-healing of sugarbeet roots was investigated using surface-abraded roots stored at 6 and 12 °C for 28 d. Surface abrasions are common injuries of stored roots, and the storage temperatures used are typical of freshly harvested or rapidly cooled roots. Transpiration rate from the wounded surface and root weight loss were used to quantify wound healing. At 12 °C, transpiration rate from the wounded surface declined within 14 d and wounded roots lost weight at a rate similar to unwounded controls. At 6 °C, transpiration rate from the wounded surface did not decline in the 28 d after injury, and wounded roots lost 44% more weight than controls after 28 d storage. Melanin formation, lignification, and suberization occurred more rapidly at 12 °C than at 6 °C, and a continuous layer of lignified and suberized cells developed at 12 °C, but not at 6 °C. Examination of enzyme activities involved in melanin, lignin, and suberin formation indicated that differences in melanin formation at 6 and 12 °C were related to differences in polyphenol oxidase activity, although no relationships between suberin or lignin formation and phenylalanine ammonia lyase or peroxidase activity were evident. Wound-induced respiration was initially greater at 12 °C than at 6 °C. However, with continued storage, respiration rate of wounded roots declined more rapidly at 12 °C, and over 28 d, the increase in respiration due to injury was 52% greater in roots stored at 6 °C than in roots stored at 12 °C. The data indicate that storage at 6 °C severely slowed and impaired wound-healing of surface-abraded sugarbeet roots relative to roots stored at 12 °C and suggest that postharvest losses may be accelerated if freshly harvested roots are cooled

  16. ANALGESIC ACTIVITY OF ROOT EXTRACT OF SOLANUM MELONGENA LINN ROOT

    OpenAIRE

    Srivastava Ashish; Sanjay Yadav

    2011-01-01

    The present study was aimed at Pharmacognostic study and biological evaluation of analgesic activity of plants roots. The roots of plants were studies for Pharmacognostic characteristics namely, morphology, microscopy, physicochemical parameters, which can be of utilized in identification/authentication of the plant and/or its roots in crude drug form. The preliminary phytochemical screening of the dry residue was carried out by the chemical test and thin layer chromatographic method. The p...

  17. Auxins differentially regulate root system architecture and cell cycle protein levels in maize seedlings.

    Science.gov (United States)

    Martínez-de la Cruz, Enrique; García-Ramírez, Elpidio; Vázquez-Ramos, Jorge M; Reyes de la Cruz, Homero; López-Bucio, José

    2015-03-15

    Maize (Zea mays) root system architecture has a complex organization, with adventitious and lateral roots determining its overall absorptive capacity. To generate basic information about the earlier stages of root development, we compared the post-embryonic growth of maize seedlings germinated in water-embedded cotton beds with that of plants obtained from embryonic axes cultivated in liquid medium. In addition, the effect of four different auxins, namely indole-3-acetic acid (IAA), 1-naphthaleneacetic acid (NAA), indole-3-butyric acid (IBA) and 2,4-dichlorophenoxyacetic acid (2,4-D) on root architecture and levels of the heat shock protein HSP101 and the cell cycle proteins CKS1, CYCA1 and CDKA1 were analyzed. Our data show that during the first days after germination, maize seedlings develop several root types with a simultaneous and/or continuous growth. The post-embryonic root development started with the formation of the primary root (PR) and seminal scutellar roots (SSR) and then continued with the formation of adventitious crown roots (CR), brace roots (BR) and lateral roots (LR). Auxins affected root architecture in a dose-response fashion; whereas NAA and IBA mostly stimulated crown root formation, 2,4-D showed a strong repressing effect on growth. The levels of HSP101, CKS1, CYCA1 and CDKA in root and leaf tissues were differentially affected by auxins and interestingly, HSP101 registered an auxin-inducible and root specific expression pattern. Taken together, our results show the timing of early branching patterns of maize and indicate that auxins regulate root development likely through modulation of the HSP101 and cell cycle proteins. PMID:25615607

  18. Research on affecting factors for collaborative procurement of cluster supply chain based on computational experiments%基于计算实验的集群式供应链协同采购影响因素研究

    Institute of Scientific and Technical Information of China (English)

    杨露露; 薛霄; 鲁保云

    2015-01-01

    针对集群式供应链协同采购影响因素的动态复杂性,采用计算实验方法模拟协同采购的形成过程,定义了系统主体间的学习交互规则,定量地研究了市场需求、采购企业密度和采购企业自利性三个因素对企业协同采购的影响。实验结果表明,市场需求的增加会导致企业选择协同采购策略的意愿降低;当系统达到稳定状态时,企业协同采购策略变化的频率很低;市场需求的波动程度增强会导致企业选择协同采购策略的意愿增加,且波动程度越强,企业选择协同采购策略的时间越早。采购企业密度的增加会导致选择协同采购策略的企业数量不断增加;采购企业自利性的增加会导致越来越多的企业放弃协同采购策略。其实验结果对集群式供应链管理具有一定的借鉴意义。%Against the dynamic complexity of the collaborative procurement influence factor in cluster supply chain,this paper adopted the method of computational experiments to simulate the formation process of collaborative procurement.It analyzed the study and interaction rules of main body in the system,quantitatively studied the influence of market demand and enterprise density and enterprise self-interest factors on the collaborative procurement of enterprises.Experimental results show that the will of enterprise who wants to choose the collaborative procurement strategy will reduce gradually as the market demand increasing;When the system reaches to steady state,the frequency of enterprises to change the collaborative procurement strate-gy is very low;The will of enterprise who wants to choose the collaborative procurement strategy will increase as the market demand fluctuations enhancing.And the stronger the fluctuation degree,the earlier the enterprises choose the collaborative procurement strategy.The increasing of purchasing enterprises density will result in the increasing of the number of

  19. Seasonal Induction of Cluster Roots in Embothrium coccineum J.R. Forst. & G. Forst. in the Field: Factors that Regulate their Development Inducción Estacional de Raíces Proteoideas en Embothrium coccineum J.R. Forst. & G. Forst. en el Campo: Factores que Regulan su Desarrollo

    Directory of Open Access Journals (Sweden)

    Gabriel Donoso-Ñanculao

    2010-12-01

    Full Text Available Embothrium coccineum J.R. Forst. & G. Forst. (Proteaceae is a tree that grows successfully in nutrient poor soils of southern Chile at full sunlight. Under these conditions it develops cluster roots (CR.However, the induction of CR on this species has not been studied completely. The aim of this work was to study the effect of seasonality, soil and weeds in the development of CR in E. coccineum. The present study was performed in Los Lagos Region (41º72’ S lat, Chile. Plants of E. coccineum were grown in sandy soils in presence or absence of weeds, using two concentrations of organic matter. The number of CR per plant, CR mass and P concentration in leaves was measured during the four seasons in E. coccineum plants. The CR development in the soil with high organic matter concentration and without weeds was observed in autumn, spring and summer, and in the soil with low organic matter concentration was observed in autumn, winter and spring. Not found related of this result with the foliar P concentration in E. coccineum. The results suggest a strong seasonal and weeds effect on CR development in E. coccineum under field conditions.Embothrium coccineum J.R. Forst. & G. Forst.(Proteaceae es un árbol que crece en suelos pobres en nutrientes del sur de Chile a pleno sol. En estas condiciones desarrolla raíces proteoideas. Sin embargo, la inducción de raíces proteoideas en esta especie no ha sido estudiada completamente. El objetivo de este trabajo fue estudiar el efecto de la estacionalidad, suelo y malezas en el desarrollo de las raíces proteoideas en E. coccineum. El presente estudio fue desarrollado en la Región de Los Lagos (41º72' lat. S, Chile. Las plantas se cultivaron en suelo arenoso en presencia o ausencia de malezas, utilizando dos concentraciones de materia orgánica. El número de raíces proteoideas por planta, el peso de las raíces proteoideas y la concentración de P foliar, se midieron durante las cuatro estaciones en

  20. Geophysical Imaging of Root Architecture and Root-soil Interaction

    Science.gov (United States)

    Wu, Y.; Dafflon, B.; Hubbard, S. S.

    2015-12-01

    Roots play a critical role in controlling water and nutrient uptake, soil biogeochemical processes, as well as the physical anchorage for plants. While important processes, such as root hydraulic redistribution for optimal growth and survival have been recognized, representation of roots in climate models, e.g. its carbon storage, carbon resilience, root biomass, and role in regulating water and carbon fluxes across the rhizosphere and atmosphere interface is still challenging. Such a challenge is exacerbated because of the large variations of root architecture and function across species and locations due to both genetic and environmental controls and the lack of methods for quantifying root mass, distribution, dynamics and interaction with soils at field scales. The scale, complexity and the dynamic nature of plant roots call for minimally invasive methods capable of providing quantitative estimation of root architecture, dynamics over time and interactions with the soils. We present a study on root architecture and root-soil interactions using geophysical methods. Parameters and processes of interests include (1) moisture dynamics around root zone and its interaction with plant transpiration and environmental controls and (2) estimation of root structure and properties based on geophysical signals. Both pot and field scale studies were conducted. The pot scale experiments were conducted under controlled conditions and were monitored with cross-well electrical resistivity tomography (ERT), TDR moisture sensors and temperature probes. Pots with and without a tree were compared and the moisture conditions were controlled via a self regulated pumping system. Geophysical monitoring revealed interactions between roots and soils under dynamic soil moisture conditions and the role of roots in regulating the response of the soil system to changes of environmental conditions, e.g. drought and precipitation events. Field scale studies were conducted on natural trees using

  1. What Makes Clusters Decline?

    DEFF Research Database (Denmark)

    Østergaard, Christian Richter; Park, Eun Kyung

    2015-01-01

    Most studies on regional clusters focus on identifying factors and processes that make clusters grow. However, sometimes technologies and market conditions suddenly shift, and clusters decline. This paper analyses the process of decline of the wireless communication cluster in Denmark....... The longitudinal study on the high-tech cluster reveals that technological lock-in and exit of key firms have contributed to decline. Entrepreneurship has a positive effect on the cluster’s adaptive capabilities, while multinational companies have contradicting effects by bringing in new resources to the cluster...

  2. Perennial roots to immortality.

    Science.gov (United States)

    Munné-Bosch, Sergi

    2014-10-01

    Maximum lifespan greatly varies among species, and it is not strictly determined; it can change with species evolution. Clonal growth is a major factor governing maximum lifespan. In the plant kingdom, the maximum lifespans described for clonal and nonclonal plants vary by an order of magnitude, with 43,600 and 5,062 years for Lomatia tasmanica and Pinus longaeva, respectively. Nonclonal perennial plants (those plants exclusively using sexual reproduction) also present a huge diversity in maximum lifespans (from a few to thousands of years) and even more interestingly, contrasting differences in aging patterns. Some plants show a clear physiological deterioration with aging, whereas others do not. Indeed, some plants can even improve their physiological performance as they age (a phenomenon called negative senescence). This diversity in aging patterns responds to species-specific life history traits and mechanisms evolved by each species to adapt to its habitat. Particularities of roots in perennial plants, such as meristem indeterminacy, modular growth, stress resistance, and patterns of senescence, are crucial in establishing perenniality and understanding adaptation of perennial plants to their habitats. Here, the key role of roots for perennial plant longevity will be discussed, taking into account current knowledge and highlighting additional aspects that still require investigation. PMID:24563283

  3. Testing chameleon gravity with the Coma cluster

    CERN Document Server

    Terukina, Ayumu; Yamamoto, Kazuhiro; Bacon, David; Koyama, Kazuya; Nichol, Robert C

    2013-01-01

    We propose a novel method to test the gravitational interactions in the outskirts of galaxy clusters. When gravity is modified, this is typically accompanied by an introduction of an additional scalar degree of freedom, which mediates an attractive fifth force. The presence of an extra gravitational coupling, however, is tightly constrained by local measurements. In chameleon modifications of gravity, local tests can be evaded by employing a screening mechanism that suppresses the fifth force in dense environments. While the chameleon field may be screened in the interior of the cluster, its outer region can still be affected by the extra force, introducing a deviation between the hydrostatic and lensing mass of the cluster. Thus, the chameleon modification can be tested by combining the gas and lensing measurements of the cluster. We demonstrate the operability of our method with the Coma cluster, for which both a lensing measurement and gas observations from the X-ray surface brightness, the X-ray temperatu...

  4. Young star clusters in circumnuclear starburst rings

    CERN Document Server

    de Grijs, Richard; Jia, Siyao; Ho, Luis C; Anders, Peter

    2016-01-01

    We analyse the cluster luminosity functions (CLFs) of the youngest star clusters in three galaxies exhibiting prominent circumnuclear starburst rings. We focus specifically on NGC 1512 and NGC 6951, for which we have access to H$\\alpha$ data that allow us to unambiguously identify the youngest sample clusters. To place our results on a firm statistical footing, we first explore in detail a number of important technical issues affecting the process from converting the observational data into the spectral-energy distributions of the objects in our final catalogues. The CLFs of the young clusters in both galaxies exhibit approximate power-law behaviour down to the 90 per cent observational completeness limits, thus showing that star cluster formation in the violent environments of starburst rings appears to proceed similarly as that elsewhere in the local Universe. We discuss this result in the context of the density of the interstellar medium in our starburst-ring galaxies.

  5. Analysis of Decision Trees in Context Clustering of Hidden Markov Model Based Thai Speech Synthesis

    Directory of Open Access Journals (Sweden)

    Suphattharachai Chomphan

    2011-01-01

    Full Text Available Problem statement: In Thai speech synthesis using Hidden Markov model (HMM based synthesis system, the tonal speech quality is degraded due to tone distortion. This major problem must be treated appropriately to preserve the tone characteristics of each syllable unit. Since tone brings about the intelligibility of the synthesized speech. It is needed to establish the tone questions and other phonetic questions in tree-based context clustering process accordingly. Approach: This study describes the analysis of questions in tree-based context clustering process of an HMM-based speech synthesis system for Thai language. In the system, spectrum, pitch or F0 and state duration are modeled simultaneously in a unified framework of HMM, their parameter distributions are clustered independently by using a decision-tree based context clustering technique. The contextual factors which affect spectrum, pitch and duration, i.e., part of speech, position and number of phones in a syllable, position and number of syllables in a word, position and number of words in a sentence, phone type and tone type, are taken into account for constructing the questions of the decision tree. All in all, thirteen sets of questions are analyzed in comparison. Results: In the experiment, we analyzed the decision trees by counting the number of questions in each node coming from those thirteen sets and by calculating the dominance score given to each question as the reciprocal of the distance from the root node to the question node. The highest number and dominance score are of the set of phonetic type, while the second, third highest ones are of the set of part of speech and tone type. Conclusion: By counting the number of questions in each node and calculating the dominance score, we can set the priority of each question set. All in all, the analysis results bring about further development of Thai speech synthesis with efficient context clustering process in

  6. ROOT Tutorial for Summer Students

    CERN Document Server

    CERN. Geneva; Piparo, Danilo

    2015-01-01

    ROOT is a "batteries-included" tool kit for data analysis, storage and visualization. It is widely used in High Energy Physics and other disciplines such as Biology, Finance and Astrophysics. This event is an introductory tutorial to ROOT and comprises a front lecture and hands on exercises. IMPORTANT NOTE: The tutorial is based on ROOT 6.04 and NOT on the ROOT5 series.  IMPORTANT NOTE: if you have ROOT 6.04 installed on your laptop, you will not need to install any virtual machine. The instructions showing how to install the virtual machine on which you can find ROOT 6.04 can be found under "Material" on this page.

  7. Removal of root filling materials.

    LENUS (Irish Health Repository)

    Duncan, H.F. Chong, B.S.

    2011-05-01

    Safe, successful and effective removal of root filling materials is an integral component of non-surgical root canal re-treatment. Access to the root canal system must be achieved in order to negotiate to the canal terminus so that deficiencies in the original treatment can be rectified. Since a range of materials have been advocated for filling root canals, different techniques are required for their removal. The management of commonly encountered root filling materials during non-surgical re-treatment, including the clinical procedures necessary for removal and the associated risks, are reviewed. As gutta-percha is the most widely used and accepted root filling material, there is a greater emphasis on its removal in this review.

  8. Comparing Leaf and Root Insertion

    Directory of Open Access Journals (Sweden)

    Jaco Geldenhuys

    2010-07-01

    Full Text Available We consider two ways of inserting a key into a binary search tree: leaf insertion which is the standard method, and root insertion which involves additional rotations. Although the respective cost of constructing leaf and root insertion binary search trees trees, in terms of comparisons, are the same in the average case, we show that in the worst case the construction of a root insertion binary search tree needs approximately 50% of the number of comparisons required by leaf insertion.

  9. What drives ICT clustering in European Cities?

    OpenAIRE

    Belitski, Maksim; Desai, S.

    2016-01-01

    ICT clusters have attracted much attention because of their rapid growth and their value for other economic activities. Using a nested multi-level model, we examine how conditions at the country level and at the city level affect ICT clustering activity in 227 cities across 22 European countries. We test for the influence of three country regulations (starting a business, registering property, enforcing contracts) and two city conditions (proximity to university, network density) on ICT clust...

  10. Role of adventitious roots in water relations of tamarack (Larix laricina seedlings exposed to flooding

    Directory of Open Access Journals (Sweden)

    Calvo-Polanco Mónica

    2012-06-01

    Full Text Available Abstract Background Flooding reduces supply of oxygen to the roots affecting plant water uptake. Some flooding-tolerant tree species including tamarack (Larix laricina (Du Roi K. Koch produce adventitious roots in response to flooding. These roots were reported to have higher hydraulic conductivity under flooding conditions compared with non-adventitious roots. In the present study, we examined structural and functional modifications in adventitious roots of tamarack seedlings to explain their flooding tolerance. Results Seedlings were subjected to the flooding treatment for six months, which resulted in an almost complete disintegration of the existing root system and its replacement with adventitious roots. We compared gas exchange parameters and water relations of flooded plants with the plants growing in well-drained soil and examined the root structures and root water transport properties. Although flooded seedlings had lower needle chlorophyll concentrations, their stomatal conductance, net photosynthesis rates and shoot water potentials were similar to non-flooded plants, indicative of flooding tolerance. Flooded adventitious roots had higher activation energy and a higher ratio of apoplastic to cell-to-cell water flow compared with non-flooded control roots as determined with the 1-hydroxypirene 3,6,8-trisulfonic acid apoplastic tracer dye. The adventitious roots in flooded plants also exhibited retarded xylem and endodermal development and accumulated numerous starch grains in the cortex. Microscopic examination of root sections treated with the PIP1 and PIP2 antibodies revealed high immunoreactivity in the cortex of non-flooded roots, as compared with flooded roots. Conclusions Structural modifications of adventitious roots suggest increased contribution of apoplastic bypass to water flow. The reduced dependence of roots on the hypoxia-sensitive aquaporin-mediated water transport is likely among the main mechanisms allowing tamarack

  11. Feynman Diagrams and Rooted Maps

    CERN Document Server

    Prunotto, A; Czerski, P

    2013-01-01

    The {\\em Rooted Maps Theory}, a branch of the Theory of Homology, is shown to be a powerful tool for investigating the topological properties of Feynman diagrams, related to the single particle propagator in the quantum many-body systems. The numerical correspondence between the number of this class of Feynman diagrams as a function of perturbative order and the number of rooted maps as a function of the number of edges is studied. A graphical procedure to associate Feynman diagrams and rooted maps is then stated. Finally, starting from rooted maps principles, an original definition of the {\\em genus of a Feynman diagram}, which totally differs from the usual one, is given.

  12. On roots of Dehn twists

    CERN Document Server

    Monden, Naoyuki

    2009-01-01

    Margalit and Schleimer constructed nontrivial roots of the Dehn twist about a nonseparating curve. We prove that the conjugacy classes of roots of the Dehn twist about a nonseparating curve correspond to the conjugacy classes of periodic maps with certain conditions. Futhermore, we give data set which determine the conjugacy class of a root. As a consequence, we can find the minimum degree and the maximum degree, and show that the degree must be odd. Also, we give Dehn twist expression of the root of degree 3.

  13. Star clusters and associations

    International Nuclear Information System (INIS)

    All 33 papers presented at the symposium were inputted to INIS. They dealt with open clusters, globular clusters, stellar associations and moving groups, and local kinematics and galactic structures. (E.S.)

  14. Strontium clusters: electronic and geometry shell effects

    DEFF Research Database (Denmark)

    Lyalin, Andrey G.; Solov'yov, Ilia; Solov'yov, Andrey V.;

    2008-01-01

    charged strontium clusters consisting of up to 14 atoms, average bonding distances, electronic shell closures, binding energies per atom, and spectra of the density of electronic states (DOS). It is demonstrated that the size-evolution of structural and electronic properties of strontium clusters...... is governed by an interplay of the electronic and geometry shell closures. Influence of the electronic shell effects on structural rearrangements can lead to violation of the icosahedral growth motif of strontium clusters. It is shown that the excessive charge essentially affects the optimized geometry...

  15. Effects of root herbivory on pyrrolizidine alkaloid content and aboveground plant-herbivore-parasitoid interactions in Jacobaea vulgaris

    NARCIS (Netherlands)

    Kostenko, O.; Mulder, P.P.J.; Bezemer, T.M.

    2013-01-01

    The importance of root herbivory is increasingly recognized in ecological studies, and the effects of root herbivory on plant growth, chemistry, and performance of aboveground herbivores have been relatively well studied. However, how belowground herbivory by root feeding insects affects aboveground

  16. Effects of Root Herbivory on Pyrrolizidine Alkaloid Content and Aboveground Plant-Herbivore-Parasitoid Interactions in Jacobaea Vulgaris

    NARCIS (Netherlands)

    Kostenko, O.; Mulder, P.P.J.; Bezemer, T.M.

    2013-01-01

    The importance of root herbivory is increasingly recognized in ecological studies, and the effects of root herbivory on plant growth, chemistry, and performance of aboveground herbivores have been relatively well studied. However, how belowground herbivory by root feeding insects affects aboveground

  17. Differential responses of grapevine rootstocks to water stress are associated with adjustments in fine root hydraulic physiology and suberization

    Science.gov (United States)

    Water deficits are known to alter fine root structure and function, but little is known about how these responses contribute to differences in drought resistance across grapevine rootstocks. We studied how water deficit affects root anatomical and physiological characteristics in two grapevine root...

  18. Fast large-scale clustering of protein structures using Gauss integrals

    DEFF Research Database (Denmark)

    Harder, Tim; Borg, Mikael; Boomsma, Wouter;

    2011-01-01

    trajectories. Results: We present Pleiades, a novel approach to clustering protein structures with a rigorous mathematical underpinning. The method approximates clustering based on the root mean square deviation by rst mapping structures to Gauss integral vectors – which were introduced by Røgen and co...

  19. Clustering Analysis on E-commerce Transaction Based on K-means Clustering

    Directory of Open Access Journals (Sweden)

    Xuan HUANG

    2014-02-01

    Full Text Available Based on the density, increment and grid etc, shortcomings like the bad elasticity, weak handling ability of high-dimensional data, sensitive to time sequence of data, bad independence of parameters and weak handling ability of noise are usually existed in clustering algorithm when facing a large number of high-dimensional transaction data. Making experiments by sampling data samples of the 300 mobile phones of Taobao, the following conclusions can be obtained: compared with Single-pass clustering algorithm, the K-means clustering algorithm has a high intra-class dissimilarity and inter-class similarity when analyzing e-commerce transaction. In addition, the K-means clustering algorithm has very high efficiency and strong elasticity when dealing with a large number of data items. However, clustering effects of this algorithm are affected by clustering number and initial positions of clustering center. Therefore, it is easy to show the local optimization for clustering results. Therefore, how to determine clustering number and initial positions of the clustering center of this algorithm is still the important job to be researched in the future.

  20. Bidirectional Agglomerative Hierarchical Clustering using AVL Tree Algorithm

    Directory of Open Access Journals (Sweden)

    Hussain Abu-Dalbouh

    2011-09-01

    Full Text Available The hierarchy is often used to infer knowledge from groups of items and relations in varying granularities. Hierarchical clustering algorithms take an input of pairwise data-item similarities and output a hierarchy of the data-items. This paper presents Bidirectional agglomerative hierarchical clustering to create a hierarchy bottom-up, by iteratively merging the closest pair of data-items into one cluster. The result is a rooted AVL tree. The n leafs correspond to input data-items (singleton clusters needs to n/2 or n/2+1 steps to merge into one cluster, correspond to groupings of items in coarser granularities climbing towards the root. As observed from the time complexity and number of steps need to cluster all data points into one cluster perspective, the performance of the bidirectional agglomerative algorithm using AVL tree is better than the current agglomerative algorithms. The experiment analysis results indicate that the improved algorithm has a higher efficiency than previous methods.

  1. Maximal rank root subsystems of hyperbolic root systems

    OpenAIRE

    Tumarkin, P.

    2003-01-01

    A Kac-Moody algebra is called hyperbolic if it corresponds to a generalized Cartan matrix of hyperbolic type. We study root subsystems of root systems of hyperbolic algebras. In this paper, we classify maximal rank regular hyperbolic subalgebras of hyperbolic Kac-Moody algebras.

  2. Radiographing roots and shoots

    International Nuclear Information System (INIS)

    The effect of seed orientation on germination time and on shoot and root growth patterns is studied. Neutron radiography is used to observe the development of 4 types of plants, maize, greenpea, soya bean and padi. These plants were grown in varying orientations; sand sizes, sand thicknesses, and level of water content. Radiography of the seeds and plants were obtained for time exposure ranging from 3-12 hours and at reactor thermal power level, ranging from 500-750 kilowatts. Results obtained showed that seeds planted in varying orientations need different length of time for shoot emergence. Neutron radiography is now developed to other areas of non-industrial applications in Malaysia. (A.J.)

  3. Root Anatomy and Root Canal Configuration of Human Permanent Mandibular Premolars: A Systematic Review

    Directory of Open Access Journals (Sweden)

    Jojo Kottoor

    2013-01-01

    Full Text Available Introduction. Mandibular premolars have been reported with complex anatomical aberrations, making them one of the most difficult teeth to manage endodontically. Methodology. An exhaustive search was undertaken to identify associated anatomic studies of mandibular premolars through MEDLINE/PubMed database using keywords, and a systematic review of the relevant articles was performed. Chi-square test with Yates correction was performed to assess the statistical significance of any anatomic variations between ethnicities and within populations of the same ethnicity. Documented case reports of variations in mandibular premolar anatomy were also identified and reviewed. Results. Thirty-six anatomic studies were analyzed which included 12,752 first premolars and nineteen studies assessing 6646 second premolars. A significant variation in the number of roots, root canals, and apical foramen was observed between Caucasian, Indian, Mongoloid, and Middle Eastern ethnicities.The most common anatomic variation was C-shaped canals in mandibular first premolars with highest incidence in Mongoloid populations (upto 24% while dens invaginatus was the most common developmental anomaly. Conclusions. A systematic review of mandibular premolars based on ethnicity and geographic clusters offered enhanced analysis of the prevalence of number of roots and canals, their canal configuration, and other related anatomy.

  4. Quantum Annealing for Clustering

    OpenAIRE

    Kurihara, Kenichi; Tanaka, Shu; Miyashita, Seiji

    2014-01-01

    This paper studies quantum annealing (QA) for clustering, which can be seen as an extension of simulated annealing (SA). We derive a QA algorithm for clustering and propose an annealing schedule, which is crucial in practice. Experiments show the proposed QA algorithm finds better clustering assignments than SA. Furthermore, QA is as easy as SA to implement.

  5. Emergence of regional clusters

    DEFF Research Database (Denmark)

    Dahl, Michael S.; Østergaard, Christian Richter; Dalum, Bent

    2010-01-01

    approach to analyse how successful early firms can lead to formation of clusters. Three key determinants are identified: (1) the geographical dimension of entrepreneurial activity, (2) spinoffs from successful firms and (3) new market opportunities. The chapter studies in great detail the evolution...... of the wireless communications cluster in Northern Denmark and compare it with the evolution of other clusters....

  6. The Durban Auto Cluster

    DEFF Research Database (Denmark)

    Lorentzen, Jochen; Robbins, Glen; Barnes, Justin

    2004-01-01

    The paper describes the formation of the Durban Auto Cluster in the context of trade liberalization. It argues that the improvement of operational competitiveness of firms in the cluster is prominently due to joint action. It tests this proposition by comparing the gains from cluster activities i...

  7. Cluster Physics with Merging Galaxy Clusters

    Directory of Open Access Journals (Sweden)

    Sandor M. Molnar

    2016-02-01

    Full Text Available Collisions between galaxy clusters provide a unique opportunity to study matter in a parameter space which cannot be explored in our laboratories on Earth. In the standard LCDM model, where the total density is dominated by the cosmological constant ($Lambda$ and the matter density by cold dark matter (CDM, structure formation is hierarchical, and clusters grow mostly by merging.Mergers of two massive clusters are the most energetic events in the universe after the Big Bang,hence they provide a unique laboratory to study cluster physics.The two main mass components in clusters behave differently during collisions:the dark matter is nearly collisionless, responding only to gravity, while the gas is subject to pressure forces and dissipation, and shocks and turbulenceare developed during collisions. In the present contribution we review the different methods used to derive the physical properties of merging clusters. Different physical processes leave their signatures on different wavelengths, thusour review is based on a multifrequency analysis. In principle, the best way to analyze multifrequency observations of merging clustersis to model them using N-body/HYDRO numerical simulations. We discuss the results of such detailed analyses.New high spatial and spectral resolution ground and space based telescopeswill come online in the near future. Motivated by these new opportunities,we briefly discuss methods which will be feasible in the near future in studying merging clusters.

  8. Thermodynamics of confined gallium clusters

    International Nuclear Information System (INIS)

    We report the results of ab initio molecular dynamics simulations of Ga13 and Ga17 clusters confined inside carbon nanotubes with different diameters. The cluster-tube interaction is simulated by the Lennard–Jones (LJ) potential. We discuss the geometries, the nature of the bonding and the thermodynamics under confinement. The geometries as well as the isomer spectra of both the clusters are significantly affected. The degree of confinement decides the dimensionality of the clusters. We observe that a number of low-energy isomers appear under moderate confinement while some isomers seen in the free space disappear. Our finite-temperature simulations bring out interesting aspects, namely that the heat capacity curve is flat, even though the ground state is symmetric. Such a flat nature indicates that the phase change is continuous. This effect is due to the restricted phase space available to the system. These observations are supported by the mean square displacement of individual atoms, which are significantly smaller than in free space. The nature of the bonding is found to be approximately jellium-like. Finally we note the relevance of the work to the problem of single file diffusion for the case of the highest confinement. (paper)

  9. Evolved Super Star Clusters in M82

    CERN Document Server

    De Grijs, R; Gallagher, J S

    1999-01-01

    We present high-resolution optical and near-infrared HST observations of two adjacent regions in the fossil starburst region in M82, B1 and B2. Age estimates date the cluster population in the fossil starburst between ~2 x 10^8 and ~10 x 10^9 years, assuming solar metallicity. The star cluster population in B2 is more heavily affected by internal extinction than that in B1. Although our cluster size estimates indicate that they are gravitationally bound, and not unlike Galactic globular clusters, their luminosity distribution is significantly fainter than both super star cluster luminosity functions (LFs) and the Galactic globular cluster LF. This makes them unlikely proto-globular clusters, since their luminosities will fade further before they are of similar age as the Galactic globular cluster population. If the compact H-alpha-bright sources in M82 B are Type II supernova remnants (SNRs), they set an upper limit to the end of the starburst in region B2, about 500 pc from the galaxy's core, of ~50 Myr. Reg...

  10. STELLAR ENCOUNTER RATE IN GALACTIC GLOBULAR CLUSTERS

    Energy Technology Data Exchange (ETDEWEB)

    Bahramian, Arash; Heinke, Craig O.; Sivakoff, Gregory R.; Gladstone, Jeanette C., E-mail: bahramia@ualberta.ca [Department of Physics, University of Alberta, CCIS 4-183, Edmonton, AB, T5K 1V4 (Canada)

    2013-04-01

    The high stellar densities in the cores of globular clusters cause significant stellar interactions. These stellar interactions can produce close binary mass-transferring systems involving compact objects and their progeny, such as X-ray binaries and radio millisecond pulsars. Comparing the numbers of these systems and interaction rates in different clusters drives our understanding of how cluster parameters affect the production of close binaries. In this paper we estimate stellar encounter rates ({Gamma}) for 124 Galactic globular clusters based on observational data as opposed to the methods previously employed, which assumed 'King-model' profiles for all clusters. By deprojecting cluster surface brightness profiles to estimate luminosity density profiles, we treat 'King-model' and 'core-collapsed' clusters in the same way. In addition, we use Monte Carlo simulations to investigate the effects of uncertainties in various observational parameters (distance, reddening, surface brightness) on {Gamma}, producing the first catalog of globular cluster stellar encounter rates with estimated errors. Comparing our results with published observations of likely products of stellar interactions (numbers of X-ray binaries, numbers of radio millisecond pulsars, and {gamma}-ray luminosity) we find both clear correlations and some differences with published results.

  11. Compensatory Root Water Uptake of Overlapping Root Systems

    Science.gov (United States)

    Agee, E.; Ivanov, V. Y.; He, L.; Bisht, G.; Shahbaz, P.; Fatichi, S.; Gough, C. M.; Couvreur, V.; Matheny, A. M.; Bohrer, G.

    2015-12-01

    Land-surface models use simplified representations of root water uptake based on biomass distributions and empirical functions that constrain water uptake during unfavorable soil moisture conditions. These models fail to capture the observed hydraulic plasticity that allows plants to regulate root hydraulic conductivity and zones of active uptake based on local gradients. Recent developments in root water uptake modeling have sought to increase its mechanistic representation by bridging the gap between physically based microscopic models and computationally feasible macroscopic approaches. It remains to be demonstrated whether bulk parameterization of microscale characteristics (e.g., root system morphology and root conductivity) can improve process representation at the ecosystem scale. We employ the Couvreur method of microscopic uptake to yield macroscopic representation in a coupled soil-root model. Using a modified version of the PFLOTRAN model, which represents the 3-D physics of variably saturated soil, we model a one-hectare temperate forest stand under natural and synthetic climatic forcing. Our results show that as shallow soil layers dry, uptake at the tree and stand level shift to deeper soil layers, allowing the transpiration stream demanded by the atmosphere. We assess the potential capacity of the model to capture compensatory root water uptake. Further, the hydraulic plasticity of the root system is demonstrated by the quick response of uptake to rainfall pulses. These initial results indicate a promising direction for land surface models in which significant three-dimensional information from large root systems can be feasibly integrated into the forest scale simulations of root water uptake.

  12. Affect Regulation

    DEFF Research Database (Denmark)

    Pedersen, Signe Holm; Poulsen, Stig Bernt; Lunn, Susanne

    2014-01-01

    Gergely and colleagues’ state that their Social Biofeedback Theory of Parental Affect Mirroring” can be seen as a kind of operationalization of the classical psychoanalytic concepts of holding, containing and mirroring. This article examines to what extent the social biofeedback theory of parenta...

  13. Affective Computing and Sentiment Analysis

    CERN Document Server

    Ahmad, Khurshid

    2011-01-01

    This volume maps the watershed areas between two 'holy grails' of computer science: the identification and interpretation of affect -- including sentiment and mood. The expression of sentiment and mood involves the use of metaphors, especially in emotive situations. Affect computing is rooted in hermeneutics, philosophy, political science and sociology, and is now a key area of research in computer science. The 24/7 news sites and blogs facilitate the expression and shaping of opinion locally and globally. Sentiment analysis, based on text and data mining, is being used in the looking at news

  14. Research progress of antagonistic interactions among root canal irrigations disease

    Directory of Open Access Journals (Sweden)

    Chen QU

    2013-07-01

    Full Text Available Root canal therapy is the most effective way to treat various pulposis and periapical disease. Simple mechanical apparatus can not clean root canal thoroughly, but may affect tight filling instead. It can achieve a satisfactory cleansing effect only when it is combined with a chemical solution. Irrigation fluid for root canal should possess the properties of tissue dissolution, antimicrobial, lubrication, and removal of smear layer. So far, no solution is able to fulfill all these functions. Therefore, a combined use of multiple irrigation solutions is suggested. It can not only achieve good effect in cleaning and disinfection, also it can lower the concentration of different solutions, thus reducing the side effects. Nevertheless, some experiments proved that antagonism existed among the chemicals used for irrigations. The purpose of present article is to review the antagonistic effect among the chemicals used for irrigation when they are used together for root canal treatment.

  15. Fluid dynamics of aortic root dilation in Marfan syndrome

    CERN Document Server

    Querzoli, Giorgio; Espa, Stefania; Costantini, Martina; Sorgini, Francesca

    2014-01-01

    Aortic root dilation and propensity to dissection are typical manifestations of the Marfan Syndrome (MS), a genetic defect leading to the degeneration of the elastic fibres. Dilation affects the structure of the flow and, in turn, altered flow may play a role in vessel dilation, generation of aneurysms, and dissection. The aim of the present work is the investigation in-vitro of the fluid dynamic modifications occurring as a consequence of the morphological changes typically induced in the aortic root by MS. A mock-loop reproducing the left ventricle outflow tract and the aortic root was used to measure time resolved velocity maps on a longitudinal symmetry plane of the aortic root. Two dilated model aortas, designed to resemble morphological characteristics typically observed in MS patients, have been compared to a reference, healthy geometry. The aortic model was designed to quantitatively reproduce the change of aortic distensibility caused by MS. Results demonstrate that vorticity released from the valve ...

  16. Molecular and dendrochronological analysis of natural root grafting in Populus tremuloides (Salicaceae).

    Science.gov (United States)

    Jelínková, Hana; Tremblay, Francine; Desrochers, Annie

    2009-08-01

    Trembling aspen (Populus tremuloides) is a clonal tree species, which regenerates mostly through root suckering. In spite of vegetative propagation, aspen maintains high levels of clonal diversity. We hypothesized that the maintenance of clonal diversity in this species can be facilitated by integrating different clones through natural root grafts into aspen's communal root system. To verify this hypothesis, we analyzed root systems of three pure aspen stands where clones had been delineated with the help of molecular markers. Grafting between roots was frequent regardless of their genotypes. Root system excavations revealed that many roots were still living below trees that had been dead for several years. Some of these roots had no root connections other than grafts to living ramets of different clones. The uncovered root systems did not include any unique genotypes that would not occur among stems. Nevertheless, acquiring roots of dead trees helps to maintain extensive root systems, which increases the chances of clone survival. Substantial interconnectivity within clones as well as between clones via interclonal grafts results in formation of large genetically diverse physiological units. Such a clonal structure can significantly affect interpretations of diverse ecophysiological processes in forests of trembling aspen. PMID:21628295

  17. Bacterial Traits Involved in Colonization of Arabidopsis thaliana Roots by Bacillus amyloliquefaciens FZB42.

    Science.gov (United States)

    Dietel, Kristin; Beator, Barbara; Budiharjo, Anto; Fan, Ben; Borriss, Rainer

    2013-03-01

    Colonization studies previously performed with a green-fluorescent-protein, GFP, labeled derivative of Bacillus amyloliquefaciens FZB42 revealed that the bacterium behaved different in colonizing surfaces of plant roots of different species (Fan et al., 2012). In order to extend these studies and to elucidate which genes are crucial for root colonization, we applied targeted mutant strains to Arabidopsis seedlings. The fates of root colonization in mutant strains impaired in synthesis of alternative sigma factors, non-ribosomal synthesis of lipopeptides and polyketides, biofilm formation, swarming motility, and plant growth promoting activity were analyzed by confocal laser scanning microscopy. Whilst the wild-type strain heavily colonized surfaces of root tips and lateral roots, the mutant strains were impaired in their ability to colonize root tips and most of them were unable to colonize lateral roots. Ability to colonize plant roots is not only dependent on the ability to form biofilms or swarming motility. Six mutants, deficient in abrB-, sigH-, sigD-, nrfA-, yusV and RBAM017410, but not affected in biofilm formation, displayed significantly reduced root colonization. The nrfA- and yusV-mutant strains colonized border cells and, partly, root surfaces but did not colonize root tips or lateral roots.

  18. Control of root meristem size by DA1-RELATED PROTEIN2 in Arabidopsis.

    Science.gov (United States)

    Peng, Yuancheng; Ma, Wenying; Chen, Liangliang; Yang, Lei; Li, Shengjun; Zhao, Hongtao; Zhao, Yankun; Jin, Weihuan; Li, Na; Bevan, Michael W; Li, Xia; Tong, Yiping; Li, Yunhai

    2013-03-01

    The control of organ growth by coordinating cell proliferation and differentiation is a fundamental developmental process. In plants, postembryonic root growth is sustained by the root meristem. For maintenance of root meristem size, the rate of cell differentiation must equal the rate of cell division. Cytokinin and auxin interact to affect the cell proliferation and differentiation balance and thus control root meristem size. However, the genetic and molecular mechanisms that determine root meristem size still remain largely unknown. Here, we report that da1-related protein2 (dar2) mutants produce small root meristems due to decreased cell division and early cell differentiation in the root meristem of Arabidopsis (Arabidopsis thaliana). dar2 mutants also exhibit reduced stem cell niche activity in the root meristem. DAR2 encodes a Lin-11, Isl-1, and Mec-3 domain-containing protein and shows an expression peak in the border between the transition zone and the elongation zone. Genetic analyses show that DAR2 functions downstream of cytokinin and SHORT HYPOCOTYL2 to maintain normal auxin distribution by influencing auxin transport. Further results indicate that DAR2 acts through the PLETHORA pathway to influence root stem cell niche activity and therefore control root meristem size. Collectively, our findings identify the role of DAR2 in root meristem size control and provide a novel link between several key regulators influencing root meristem size.

  19. Root Morphology and Zn2+ Uptake Kinetics of the Zn Hyperaccumulator of Sedum alfredii Hance

    Institute of Scientific and Technical Information of China (English)

    Ting-Qiang LI; Xiao-E YANG; Zhen-Li HE; Jin-Yan YANG

    2005-01-01

    Root morphology and Zn2+ uptake kinetics of the hyperaccumulating ecotype (HE) and nonhyperaccumulating ecotype (NHE) of Sedum alfredii Hance were investigated using hydroponic methods and the radiotracer flux technique. The results indicate that root length, root surface area, and root volume of NHE decreased significantly with increasing Zn2+ concentration in growth media, whereas the root growth of HE was not adversely affected, and was even promoted, by 500 μmol/L Zn2+. The concentrations of Zn2+ in both ecotypes of S. alfredii were positively correlated with root length, root surface area and root volumes, but no such correlation was found for root diameter. The uptake kinetics for 65Zn2+ in roots of both ecotypes of S. alfredii were characterized by a rapid linear phase during the first 6 h and a slower linear phase during the subsequent period of investigation. The concentration-dependent uptake kinetics of the two ecotypes of S. alfredii could be characterized by the Michaelis-Menten equation, with the Vmax for 65Zn2+ influx being threefold greater in HE compared with NHE, indicating that enhanced absorption into the root was one of the mechanisms involved in Zn hyperaccumulation. A significantly larger Vmax value suggested that there was a higher density of Zn transporters per unit membrane area in HE roots.

  20. Evaluation of strategies to separate root-associated microbial communities: A crucial choice in rhizobiome research

    Directory of Open Access Journals (Sweden)

    Tim eRichter-Heitmann

    2016-05-01

    Full Text Available Plants shape distinct, species-specific microbiomes in their rhizospheres. A main premise for evaluating microbial communities associated with root-soil compartments is their successful separation into the rhizosphere (soil-root interface, the rhizoplane (root surface, and the endosphere (inside roots. We evaluated different approaches (washing, sonication, bleaching regarding their efficiency to separate microbial cells associated with different root compartments of soil-grown rice using fluorescence microscopy and community fingerprinting of 16S rRNA genes. Vigorous washing detached 45% of the rhizoplane population compared to untreated roots. Additional sonication reduced rhizoplane-attached microorganisms by up to 78% but caused various degrees of root tissue destruction at all sonication intensities tested. Treatment with sodium hypochlorite almost completely (98% removed rhizoplane-associated microbial cells. Community fingerprinting revealed that microbial communities obtained from untreated, washed, and sonicated roots were not statistically distinguishable. Hypochlorite-treated roots harbored communities significantly different from all other samples, likely representing true endospheric populations. Applying these procedures to other root samples (bean, clover revealed that treatment efficiencies were strongly affected by root morphological parameters such as root hair density and rigidity of epidermis. Our findings suggest that a careful evaluation of separation strategies prior to molecular community analysis is indispensable, especially when endophytes are the subject of interest.

  1. Cluster analysis for applications

    CERN Document Server

    Anderberg, Michael R

    1973-01-01

    Cluster Analysis for Applications deals with methods and various applications of cluster analysis. Topics covered range from variables and scales to measures of association among variables and among data units. Conceptual problems in cluster analysis are discussed, along with hierarchical and non-hierarchical clustering methods. The necessary elements of data analysis, statistics, cluster analysis, and computer implementation are integrated vertically to cover the complete path from raw data to a finished analysis.Comprised of 10 chapters, this book begins with an introduction to the subject o

  2. Properties of Estimated Characteristic Roots

    DEFF Research Database (Denmark)

    Nielsen, Bent; Nielsen, Heino Bohn

    Estimated characteristic roots in stationary autoregressions are shown to give rather noisy information about their population equivalents. This is remarkable given the central role of the characteristic roots in the theory of autoregressive processes. In the asymptotic analysis the problems appear...

  3. Project Work on Plant Roots.

    Science.gov (United States)

    Devonald, V. G.

    1986-01-01

    Methods of investigating plant root growth developed for research purposes can be adopted for student use. Investigations of the effect of water table level and of ethylene concentration are described, and techniques of measuring root growth are explained. (Author/ML)

  4. Driving factors for cluster development - Which kind of spatial rootedness and change?

    OpenAIRE

    Franz Tödtling; Alexander Auer; Tanja Sinozic

    2014-01-01

    Driving factors and mechanisms for cluster development have often been investigated based on the standard cluster approach as conceptualised e.g. by Michael Porter. These studies have revealed certain insights regarding the role of local entrepreneurship, factor conditions, demand, and related industries in supporting clusters. However, such factors were analysed often from a static competitiveness perspective, and they were often seen as rooted in a region or part of an overly ...

  5. Effects of long-term temperature and nutrient manipulation on Norway spruce fine roots and mycelia production

    DEFF Research Database (Denmark)

    Leppälammi-Kujansuu, J.; Ostonen, I.; Strömgren, M.;

    2013-01-01

    Aims and methods The effects of changing climate on ectomycorrhizal (EcM) fine roots were studied in northern Sweden by manipulating soil temperature for 14 years and/or by fertilizing for 22 years. Fine root biomass, necromass, EcM root tip biomass, morphology and number as well as mycelia...... production were determined from soil cores and mesh bags. Results and conclusions The fine root biomass and necromass were highest in the fertilized plots, following similar trends in the above-ground biomass, whereas the EcM root tip biomass per basal area decreased by 22 % in the fertilized plots compared...... to the control. Warming increased the fine root biomass, live/dead-ratio and the number of EcM root tips in the mineral soil and tended to increase the production of EcM mycelia. Greater fine root biomass meant more EcM root tips, although the tip frequency was not affected by fertilization or warming...

  6. Effects of root herbivory on pyrrolizidine alkaloid content and aboveground plant-herbivore-parasitoid interactions in Jacobaea vulgaris

    OpenAIRE

    O. Kostenko; Mulder, P.P.J.; Bezemer, T.M.

    2013-01-01

    The importance of root herbivory is increasingly recognized in ecological studies, and the effects of root herbivory on plant growth, chemistry, and performance of aboveground herbivores have been relatively well studied. However, how belowground herbivory by root feeding insects affects aboveground parasitoid development is largely unknown. In this study, we examined the effects of root herbivory by wireworms (Agriotes lineatus) on the expression of primary and secondary compounds in the lea...

  7. Clusters in nuclei

    CERN Document Server

    Beck, Christian

    Following the pioneering discovery of alpha clustering and of molecular resonances, the field of nuclear clustering is today one of those domains of heavy-ion nuclear physics that faces the greatest challenges, yet also contains the greatest opportunities. After many summer schools and workshops, in particular over the last decade, the community of nuclear molecular physicists has decided to collaborate in producing a comprehensive collection of lectures and tutorial reviews covering the field. This third volume follows the successful Lect. Notes Phys. 818 (Vol. 1) and 848 (Vol. 2), and comprises six extensive lectures covering the following topics:  - Gamma Rays and Molecular Structure - Faddeev Equation Approach for Three Cluster Nuclear Reactions - Tomography of the Cluster Structure of Light Nuclei Via Relativistic Dissociation - Clustering Effects Within the Dinuclear Model : From Light to Hyper-heavy Molecules in Dynamical Mean-field Approach - Clusterization in Ternary Fission - Clusters in Light N...

  8. Unconventional methods for clustering

    Science.gov (United States)

    Kotyrba, Martin

    2016-06-01

    Cluster analysis or clustering is a task of grouping a set of objects in such a way that objects in the same group (called a cluster) are more similar (in some sense or another) to each other than to those in other groups (clusters). It is the main task of exploratory data mining and a common technique for statistical data analysis used in many fields, including machine learning, pattern recognition, image analysis, information retrieval, and bioinformatics. The topic of this paper is one of the modern methods of clustering namely SOM (Self Organising Map). The paper describes the theory needed to understand the principle of clustering and descriptions of algorithm used with clustering in our experiments.

  9. Spatial cluster modelling

    CERN Document Server

    Lawson, Andrew B

    2002-01-01

    Research has generated a number of advances in methods for spatial cluster modelling in recent years, particularly in the area of Bayesian cluster modelling. Along with these advances has come an explosion of interest in the potential applications of this work, especially in epidemiology and genome research. In one integrated volume, this book reviews the state-of-the-art in spatial clustering and spatial cluster modelling, bringing together research and applications previously scattered throughout the literature. It begins with an overview of the field, then presents a series of chapters that illuminate the nature and purpose of cluster modelling within different application areas, including astrophysics, epidemiology, ecology, and imaging. The focus then shifts to methods, with discussions on point and object process modelling, perfect sampling of cluster processes, partitioning in space and space-time, spatial and spatio-temporal process modelling, nonparametric methods for clustering, and spatio-temporal ...

  10. Root water potential integrates discrete soil physical properties to influence ABA signalling during partial rootzone drying.

    Science.gov (United States)

    Dodd, Ian C; Egea, Gregorio; Watts, Chris W; Whalley, W Richard

    2010-08-01

    To investigate the influence of different growing substrates (two mineral, two organic) on root xylem ABA concentration ([ABA](root)) and the contribution of the drying root system to total sap flow during partial rootzone drying (PRD), sunflower (Helianthus annuus L.) shoots were grafted onto the root systems of two plants grown in separate pots. Sap flow through each hypocotyl was measured below the graft union when one pot ('wet') was watered and other ('dry') was not. Each substrate gave unique relationships between dry pot matric potential (Psi(soil)), volumetric water content ((v)) or penetrometer resistance (Q) and either the fraction of photoperiod sap flow from roots in drying soil or [ABA](root). However, decreased relative sap flow, and increased [ABA](root), from roots in drying soil varied with root water potential (Psi(root)) more similarly across a range of substrates. The gradient between Psi(soil) and Psi(root) was greater in substrates with high sand or peat proportions, which may have contributed to a more sensitive response of [ABA](root) to Psi(soil) in these substrates. Whole plant transpiration was most closely correlated with the mean Psi(soil) of both pots, and then with detached leaf xylem ABA concentration. Although Psi(root) best predicted decreased relative sap flow, and increased [ABA](root), from roots in drying soil across a range of substrates, the inaccessibility of this variable in field studies requires a better understanding of how measurable soil variables (Psi(soil), (v), Q) affect Psi(root). PMID:20591896

  11. Breeding of Root and Tuber Crops

    International Nuclear Information System (INIS)

    The root and tuber crops cassava, yams and sweet potato are important in Nigeria and Africa. Breeding methods most appropriate to these crops are discussed in terms of mating systems, creation of source populations, selections. Intervarietal hybridization, interspecific hybridization, and population improvement through cyclic selection and recombination procedures are methods of creating source populations. Factors affecting the effectiveness of selection, and efficient methods of selection to make maximum genetic progress are discussed. Use of selections is briefly stated. Synthetics, composites, or single and double crosses of yam produced from true seed may be used at the farmer level. (author)

  12. Endodontic Management of Maxillary Second Molar with Two Palatal Roots: A Report of Two Cases

    Directory of Open Access Journals (Sweden)

    Surbhi Patel

    2012-01-01

    Full Text Available Endodontic treatment may sometimes fail because morphological features of the tooth adversely affect the treatment protocol. Maxillary second molars are recognized as usually having a single palatal root with a single palatal canal. The incidence of second palatal root in the maxillary second molar is very rare. Two cases are presented in this paper describing the endodontic management of a four-rooted maxillary second molar with two distinct palatal roots and canals and two distinct buccal roots and canals. Clinical examination and radiographs showed the presence of two palatal roots during the root canal procedure. The canals were biomechanically prepared with crown-down technique and obturated using lateral condensation technique with AH-Plus sealer.

  13. Auxin, the organizer of the environmental/hormonal signals for root hair growth

    Directory of Open Access Journals (Sweden)

    Hyung-Taeg eCho

    2013-11-01

    Full Text Available The root hair development is controlled by diverse factors such as fate-determining developmental cues, auxin-related environmental factors, and hormones. In particular, the soil environmental factors are important as they maximize their absorption by modulating root hair development. These environmental factors affect the root hair developmental process by making use of diverse hormones. These hormonal factors interact with each other to modulate root hair development in which auxin appears to form the most intensive networks with the pathways from environmental factors and hormones. Moreover, auxin action for root hair development is genetically located immediately upstream of the root hair-morphogenetic genes. These observations suggest that auxin plays as an organizing node for environmental/hormonal pathways to modulate root hair growth.

  14. Cassava root membrane proteome reveals activities during storage root maturation.

    Science.gov (United States)

    Naconsie, Maliwan; Lertpanyasampatha, Manassawe; Viboonjun, Unchera; Netrphan, Supatcharee; Kuwano, Masayoshi; Ogasawara, Naotake; Narangajavana, Jarunya

    2016-01-01

    Cassava (Manihot esculenta Crantz) is one of the most important crops of Thailand. Its storage roots are used as food, feed, starch production, and be the important source for biofuel and biodegradable plastic production. Despite the importance of cassava storage roots, little is known about the mechanisms involved in their formation. This present study has focused on comparison of the expression profiles of cassava root proteome at various developmental stages using two-dimensional gel electrophoresis and LC-MS/MS. Based on an anatomical study using Toluidine Blue, the secondary growth was confirmed to be essential during the development of cassava storage root. To investigate biochemical processes occurring during storage root maturation, soluble and membrane proteins were isolated from storage roots harvested from 3-, 6-, 9-, and 12-month-old cassava plants. The proteins with differential expression pattern were analysed and identified to be associated with 8 functional groups: protein folding and degradation, energy, metabolism, secondary metabolism, stress response, transport facilitation, cytoskeleton, and unclassified function. The expression profiling of membrane proteins revealed the proteins involved in protein folding and degradation, energy, and cell structure were highly expressed during early stages of development. Integration of these data along with the information available in genome and transcriptome databases is critical to expand knowledge obtained solely from the field of proteomics. Possible role of identified proteins were discussed in relation with the activities during storage root maturation in cassava.

  15. Survey on Text Document Clustering

    OpenAIRE

    M.Thangamani; Dr.P.Thangaraj

    2010-01-01

    Document clustering is also referred as text clustering, and its concept is merely equal to data clustering. It is hardly difficult to find the selective information from an ‘N’number of series information, so that document clustering came into picture. Basically cluster means a group of similar data, document clustering means segregating the data into different groups of similar data. Clustering can be of mathematical, statistical or numerical domain. Clustering is a fundamental data analysi...

  16. Effect of B supply on root growth and B nutritional efficiency in oilseed rape at seedling stage as affected by soil moisture regimes%水分状况及硼素营养对油菜苗期根系生长及硼营养效率的影响

    Institute of Scientific and Technical Information of China (English)

    娄运生; 杨玉爱; 等

    2001-01-01

    Pot experiment was conducted in greenhouse to determine theeffects of boron (B) supply on root growth and B uptake, utilization and its mobilization in oilseed rape (Brassica napus L. ) at seedling stage under different soil water contents. The results showed that, with the decrease of soil water content and B application levels, decreases in total root length , root volume, root growth rate and the ratio of root to shoot were observed, both root and shoot dry matter production were inhibited. Fur thermore, B concentration and B content in shoot were decreased. However, B utilization efficiency (BUE) and B mobilization index (BMI) increased as a result of the decreases of soil water content and B application levels. Differences in root morphological parameters (including total root length, root volume, root dry matter ,root to shoot ratio and root growth rate) BUE and BMI in oilseed rape cultivars used in this experiment were obvious, that is ,V1 showed larger root system , higher BUE and BMI than V4 under the same conditions. It is suggested that root morophology, BUE and B mobility in plant were the major factors responsible for the differences in response of different oilseed rape cultivars to B deficiency.%采用温室盆栽试验,研究了不同土壤水分条件下施硼对油菜苗期根系生长、硼吸收、利用及其移动性的影响。结果表明,随土壤含水量、施硼量的下降,油菜根长、根体积、根系生长速率、根/冠比减小,根系及地上部干物质积累降低,植株地上部硼浓度及含硼量下降。而硼利用效率、硼运移指数则随土壤含水量、施硼量的下降而升高。不同油菜品种的根系形态参数(包括根长、根体积、根干重、根冠比及根系生长速率)、硼利用效率及运移指数存在明显差异,即在相同条件下,V1根系较发达,硼利用效率、运移指数均高于V4。研究认为,根系发达程度、硼利用效率及硼移动性

  17. Planetary systems in star clusters

    CERN Document Server

    Kouwenhoven, M B N; Cai, Maxwell Xu; Spurzem, Rainer

    2016-01-01

    Thousands of confirmed and candidate exoplanets have been identified in recent years. Consequently, theoretical research on the formation and dynamical evolution of planetary systems has seen a boost, and the processes of planet-planet scattering, secular evolution, and interaction between planets and gas/debris disks have been well-studied. Almost all of this work has focused on the formation and evolution of isolated planetary systems, and neglect the effect of external influences, such as the gravitational interaction with neighbouring stars. Most stars, however, form in clustered environments that either quickly disperse, or evolve into open clusters. Under these conditions, young planetary systems experience frequent close encounters with other stars, at least during the first 1-10 Myr, which affects planets orbiting at any period range, as well as their debris structures.

  18. Affective Networks

    Directory of Open Access Journals (Sweden)

    Jodi Dean

    2010-02-01

    Full Text Available This article sets out the idea of affective networks as a constitutive feature of communicative capitalism. It explores the circulation of intensities in contemporary information and communication networks, arguing that this circulation should be theorized in terms of the psychoanalytic notion of the drive. The article includes critical engagements with theorists such as Guy Debord, Jacques Lacan, Tiziana Terranova, and Slavoj Zizek.

  19. ROOTS - en totaloplevelsesevent

    OpenAIRE

    Boesen, Morten; Hjælmsø, Lea; Uhrbrand, Kirstine; Gyrsting Lorentzen, Christine; Bech Hansen, Ann Sophie

    2008-01-01

    The vision of this project is to re-launch Danish folk music through an event, where we focus on affecting all physical senses. The target group consists of young people between 15 and 25 years of age, and the event setting will be based on the their existing prejudice about the genre. Our hypothesis in this project is that the target groups’ perception of folk music is affected by their prejudices. Identification of the prejudices will be based on a focus group interview with members from th...

  20. Medico-legal aspects of vertical root fractures in root filled teeth

    DEFF Research Database (Denmark)

    Rosen, E; Tsesis, I; Tamse, A;

    2012-01-01

    To analyse the medico-legal aspects of vertical root fracture (VRF) following root canal treatment (RCT).......To analyse the medico-legal aspects of vertical root fracture (VRF) following root canal treatment (RCT)....

  1. Agricultural Clusters in the Netherlands

    NARCIS (Netherlands)

    Schouten, M.A.; Heijman, W.J.M.

    2012-01-01

    Michael Porter was the first to use the term cluster in an economic context. He introduced the term in The Competitive Advantage of Nations (1990). The term cluster is also known as business cluster, industry cluster, competitive cluster or Porterian cluster. This article aims at determining and mea

  2. Root growth regulation and gravitropism in maize roots does not require the epidermis

    Science.gov (United States)

    Bjorkman, T.; Cleland, R. E.

    1991-01-01

    We have earlier published observations showing that endogenous alterations in growth rate during gravitropism in maize roots (Zea mays L.) are unaffected by the orientation of cuts which remove epidermal and cortical tissue in the growing zone (Bjorkman and Cleland, 1988, Planta 176, 513-518). We concluded that the epidermis and cortex are not essential for transporting a growth-regulating signal in gravitropism or straight growth, nor for regulating the rate of tissue expansion. This conclusion has been challenged by Yang et al. (1990, Planta 180, 530-536), who contend that a shallow girdle around the entire perimeter of the root blocks gravitropic curvature and that this inhibition is the result of a requirement for epidermal cells to transport the growth-regulating signal. In this paper we demonstrate that the entire epidermis can be removed without blocking gravitropic curvature and show that the position of narrow girdles does not affect the location of curvature. We therefore conclude that the epidermis is not required for transport of a growth-regulating substance from the root cap to the growing zone, nor does it regulate the growth rate of the elongating zone of roots.

  3. Effect of planting density on root lodging resistance and its relationship to nodal root growth characteristics in maize (Zea mays L.)

    DEFF Research Database (Denmark)

    Liu, Shengqun; Song, Fengbin; Liu, Fulai;

    2012-01-01

    Increase of planting density has been widely used to increase grain yield in maize. However, it may lead to higher risk of root lodging hence causing significant yield loss of the crop. The objective of this study was to investigate the effect of planting density on maize nodal root growth...... characteristics and to analyse their relationships to root lodging resistance. Field experiment was conducted in 2010 and 2011, using two maize varieties, Zhengdan 958 (ZD) and Xianyu 335 (XY), under three planting densities, viz., 4.50, 8.25 and 12.00 plants m-2. The results showed the root failure moment......, an indicator of root lodging resistance, was significantly affected by the planting density, the maize variety, as well as the crop developmental stages, and was decreased with increasing planting density. The number and the average diameter of the roots on the upper internodes (phytomer 5 to 8) were decreased...

  4. Gravisensing in roots

    Science.gov (United States)

    Perbal, G.

    1999-01-01

    The mode of gravisensing in higher plants is not yet elucidated. Although, it is generally accepted that the amyloplasts (statoliths) in the root cap cells (statocytes) are responsible for susception of gravity. However, the hypothesis that the whole protoplast acts as gravisusceptor cannot be dismissed. The nature of the sensor that is able to transduce and amplify the mechanical energy into a biochemical factor is even more controversial. Several cell structures could potentially serve as gravireceptors: the endoplasmic reticulum, the actin network, the plasma membrane, or the cytoskeleton associated with this membrane. The nature of the gravisusceptors and gravisensors is discussed by taking into account the characteristics of the gravitropic reaction with respect to the presentation time, the threshold acceleration, the reciprocity rule, the deviation from the sine rule, the movement of the amyloplasts, the pre-inversion effect, the response of starch free and intermediate mutants and the effects of cytochalasin treatment. From this analysis, it can be concluded that both the amyloplasts and the protoplast could be the gravisusceptors, the former being more efficient than the latter since they can focus pressure on limited areas. The receptor should be located in the plasma membrane and could be a stretch-activated ion channel.

  5. Shoot and root dry weight in drought exposed tomato populations

    Directory of Open Access Journals (Sweden)

    Brdar-Jokanović Milka

    2014-01-01

    Full Text Available This research was conducted with the aim to among forty-one tested tomato (Lycopersicon esculentum Mill populations distinguish those tolerant to limited water supply. Tolerance assessments were performed by using sixteen drought stress selection indices calculated on the basis of tomato shoot and root dry weight yields determined at water stress and non-stress conditions. Populations were differentiated in groups using the method of cluster analysis. The pot experiment was set in controlled greenhouse conditions and comprised optimally irrigated control and drought treatment (35.0 and 20.9% volumetric soil water content, respectively, imposed at the phase of intensive vegetative growth. The experiment was conducted at the Institute for Vegetable Crops in Smederevska Palanka, Serbia. The analyzed tomatoes exhibited significant differences in terms of response to limited irrigation, which had more pronounced effect on shoot dry weight than on the roots (average decrease of 64.4 and 35.7%, respectively. Consequently, root fraction in the total dry weight increased at drought for 68.2% on average. Shoot and root dry weights were positively correlated at optimal irrigation but not in drought, implying genotypic differences in terms of root adjustments to stress conditions. As for the calculated selection indices, substantial variation was found among the populations enabling their ranking in terms of drought tolerance. Since ranking was not the same in all cases, clustering the populations was performed taking into account all sixteen selection indices. The results of this analysis indicate that populations designated with numbers 126, 124, 131, 125, 128, 105, 101, 138, 110, 132 and 109 in Institute for Vegetable Crops germplasm collection exhibit satisfactory level of drought tolerance at vegetative phase and therefore may be used as parents in breeding programs. [Projekat Ministarstva nauke Republike Srbije, br. TR 31005 i br. TR 31059

  6. Root anatomical phenes predict root penetration ability and biomechanical properties in maize (Zea Mays)

    OpenAIRE

    Chimungu, Joseph G.; Loades, Kenneth W.; Lynch, Jonathan P.

    2015-01-01

    The ability of roots to penetrate hard soil is important for crop productivity but specific root phenes contributing to this ability are poorly understood. Root penetrability and biomechanical properties are likely to vary in the root system dependent on anatomical structure. No information is available to date on the influence of root anatomical phenes on root penetrability and biomechanics. Root penetration ability was evaluated using a wax layer system. Root tensile and bending strength we...

  7. Genetics Home Reference: myopathy with deficiency of iron-sulfur cluster assembly enzyme

    Science.gov (United States)

    ... myopathy with deficiency of iron-sulfur cluster assembly enzyme Enable Javascript to view the expand/collapse boxes. ... Myopathy with deficiency of iron-sulfur cluster assembly enzyme is an inherited disorder that primarily affects muscles ...

  8. ASteCA: Automated Stellar Cluster Analysis

    Science.gov (United States)

    Perren, G. I.; Vázquez, R. A.; Piatti, A. E.

    2015-04-01

    We present the Automated Stellar Cluster Analysis package (ASteCA), a suit of tools designed to fully automate the standard tests applied on stellar clusters to determine their basic parameters. The set of functions included in the code make use of positional and photometric data to obtain precise and objective values for a given cluster's center coordinates, radius, luminosity function and integrated color magnitude, as well as characterizing through a statistical estimator its probability of being a true physical cluster rather than a random overdensity of field stars. ASteCA incorporates a Bayesian field star decontamination algorithm capable of assigning membership probabilities using photometric data alone. An isochrone fitting process based on the generation of synthetic clusters from theoretical isochrones and selection of the best fit through a genetic algorithm is also present, which allows ASteCA to provide accurate estimates for a cluster's metallicity, age, extinction and distance values along with its uncertainties. To validate the code we applied it on a large set of over 400 synthetic MASSCLEAN clusters with varying degrees of field star contamination as well as a smaller set of 20 observed Milky Way open clusters (Berkeley 7, Bochum 11, Czernik 26, Czernik 30, Haffner 11, Haffner 19, NGC 133, NGC 2236, NGC 2264, NGC 2324, NGC 2421, NGC 2627, NGC 6231, NGC 6383, NGC 6705, Ruprecht 1, Tombaugh 1, Trumpler 1, Trumpler 5 and Trumpler 14) studied in the literature. The results show that ASteCA is able to recover cluster parameters with an acceptable precision even for those clusters affected by substantial field star contamination. ASteCA is written in Python and is made available as an open source code which can be downloaded ready to be used from its official site.

  9. Root development during soil genesis: effects of root-root interactions, mycorrhizae, and substrate

    Science.gov (United States)

    Salinas, A.; Zaharescu, D. G.

    2015-12-01

    A major driver of soil formation is the colonization and transformation of rock by plants and associated microbiota. In turn, substrate chemical composition can also influence the capacity for plant colonization and development. In order to better define these relationships, a mesocosm study was set up to analyze the effect mycorrhizal fungi, plant density and rock have on root development, and to determine the effect of root morphology on weathering and soil formation. We hypothesized that plant-plant and plant-fungi interactions have a stronger influence on root architecture and rock weathering than the substrate composition alone. Buffalo grass (Bouteloua dactyloides) was grown in a controlled environment in columns filled with either granular granite, schist, rhyolite or basalt. Each substrate was given two different treatments, including grass-microbes and grass-microbes-mycorrhizae and incubated for 120, 240, and 480 days. Columns were then extracted and analyzed for root morphology, fine fraction, and pore water major element content. Preliminary results showed that plants produced more biomass in rhyolite, followed by schist, basalt, and granite, indicating that substrate composition is an important driver of root development. In support of our hypothesis, mycorrhizae was a strong driver of root development by stimulating length growth, biomass production, and branching. However, average root length and branching also appeared to decrease in response to high plant density, though this trend was only present among roots with mycorrhizal fungi. Interestingly, fine fraction production was negatively correlated with average root thickness and volume. There is also slight evidence indicating that fine fraction production is more related to substrate composition than root morphology, though this data needs to be further analyzed. Our hope is that the results of this study can one day be applied to agricultural research in order to promote the production of crops

  10. Temperature-Dependent Water and Ion Transport Properties of Barley and Sorghum Roots 1

    Science.gov (United States)

    BassiriRad, Hormoz; Radin, John W.; Matsuda, Kaoru

    1991-01-01

    Root temperature strongly affects shoot growth, possibly via “nonhydraulic messengers” from root to shoot. In short-term studies with barley (Hordeum vulgare L.) and sorghum (Sorghum bicolor L.) seedlings, the optimum root temperatures for leaf expansion were 25° and 35°C, respectively. Hydraulic conductance (Lp) of both intact plants and detached exuding roots of barley increased with increasing root temperature to a high value at 25°C, remaining high with further warming. In sorghum, the Lp of intact plants and of detached roots peaked at 35°C. In both species, root temperature did not affect water potentials of the expanded leaf blade or the growing region despite marked changes in Lp. Extreme temperatures greatly decreased ion flux, particularly K+ and NO3−, to the xylem of detached roots of both species. Removing external K+ did not alter short-term K+ flux to the xylem in sorghum but strongly inhibited flux at high temperature in barley, indicating differences in the sites of temperature effects. Leaf growth responses to root temperature, although apparently “uncoupled” from water transport properties, were correlated with ion fluxes. Studies of putative root messengers must take into account the possible role of ions. PMID:16668404

  11. Root pruning reduces root competition in living mulch cropping systems

    OpenAIRE

    Båth, B.; Kristensen, Hanne Lakkenborg; Thorup-Kristensen, Kristian

    2009-01-01

    In intercropping systems with a cash crop and a living mulch intercrop, competition between the cash crop and the intercrop (the living mulch) often reduces the yield of the cash crop. This project investigated (1) the influence of root pruning of living mulches on aboveground biomass of white cabbage. Below-ground growth and competition were examined by measuring (2) root distribution in minirhizotrons and (3) uptake of 15N placed at different soil depths. Two field experiments were carried ...

  12. Hypocotyl adventitious root organogenesis differs from lateral root development

    Directory of Open Access Journals (Sweden)

    Inge eVerstraeten

    2014-09-01

    Full Text Available Wound-induced adventitious root (AR formation is a requirement for plant survival upon root damage inflicted by pathogen attack, but also during the regeneration of plant stem cuttings for clonal propagation of elite plant varieties. Yet, adventitious rooting also takes place without wounding. This happens for example in etiolated Arabidopsis thaliana hypocotyls, in which AR initiate upon de-etiolation or in tomato seedlings, in which AR initiate upon flooding or high water availability. In the hypocotyl AR originate from a cell layer reminiscent to the pericycle in the primary root (PR and the initiated AR share histological and developmental characteristics with lateral roots (LR. In contrast to the PR however, the hypocotyl is a determinate structure with an established final number of cells. This points to differences between the induction of hypocotyl AR and LR on the PR, as the latter grows indeterminately. The induction of AR on the hypocotyl takes place in environmental conditions that differ from those that control LR formation. Hence, AR formation depends on differentially regulated gene products. Similarly to AR induction in stem cuttings, the capacity to induce hypocotyl AR is genotype-dependent and the plant growth regulator auxin is a key regulator controlling the rooting response. The hormones cytokinins, ethylene, jasmonic acid and strigolactones in general reduce the root-inducing capacity. The involvement of this many regulators indicates that a tight control and fine-tuning of the initiation and emergence of AR exists. Recently, several genetic factors, specific to hypocotyl adventitious rooting in Arabidopsis thaliana, have been uncovered. These factors reveal a dedicated signaling network that drives AR formation in the Arabidopsis hypocotyl. Here we provide an overview of the environmental and genetic factors controlling hypocotyl-born AR and we summarize how AR formation and the regulating factors of this organogenesis are

  13. Root rots of common and tepary beans in Puerto Rico

    Science.gov (United States)

    Root rots are a disease complex affecting common bean and can be severe in bean growing areas in the tropics and subtropics. The presence of several pathogens makes it difficult to breed for resistance because of the synergistic effect of the pathogens in the host and the interaction of soil factors...

  14. Weeding Out the Roots of Involvement: Looking for a Hybrid.

    Science.gov (United States)

    Pokrywczynski, James; Fletcher, James

    The construct of involvement, used by marketers and consumer behaviorists for many years as a predictive measure of the qualitative relationship between an individual and a stimulus, has long been defined as having affective or cognitive roots. However, definitions that favor one or the other too heavily are less helpful because they are too…

  15. Fine roots and ectomycorrhizas as indicators of environmental change.

    NARCIS (Netherlands)

    Cudlin, P.; Kieliszewska-Rokicka, B.; Rudawska, M.; Grebenc, T.; Alberton, O.; Lehto, T.; Bakker, M.R.; Borja, I.; Konopka, B.; Leski, T.; Kraigher, H.; Kuyper, T.W.

    2007-01-01

    Human-induced and natural stress factors can affect fine roots and ectomycorrhizas. Therefore they have potential utility as indicators of environmental change. We evaluated, through meta-analysis, the magnitude of the effects of acidic deposition, nitrogen deposition, increased ozone levels, elevat

  16. Identifying Clusters within R&D Intensive Industries Using Local Spatial Methods

    OpenAIRE

    Kosfeld, Reinhold

    2012-01-01

    In recent times, there has been a renewed interest in cluster policies for supporting industrial and regional development. Prominent economics like Porter and Krugman emphasise the role of clusters in regional competition and show in which way clusters can positively affect competition by increasing productivity and innovation. Because of the linkage between growth and innovation, R&D intensive industries play a crucial role in cluster development strategies. Empirical cluster research has to...

  17. Clustering Categorical Data:A Cluster Ensemble Approach

    Institute of Scientific and Technical Information of China (English)

    He Zengyou(何增友); Xu Xiaofei; Deng Shengchun

    2003-01-01

    Clustering categorical data, an integral part of data mining,has attracted much attention recently. In this paper, the authors formally define the categorical data clustering problem as an optimization problem from the viewpoint of cluster ensemble, and apply cluster ensemble approach for clustering categorical data. Experimental results on real datasets show that better clustering accuracy can be obtained by comparing with existing categorical data clustering algorithms.

  18. Spatial Scan Statistic: Selecting clusters and generating elliptic clusters

    DEFF Research Database (Denmark)

    Christiansen, Lasse Engbo; Andersen, Jens Strodl

    2004-01-01

    The spatial scan statistic is widely used to search for clusters. This paper shows that the usually applied elimination of overlapping clusters to find secondary clusters is sensitive to smooth changes in the shape of the clusters. We present an algorithm for generation of set of confocal elliptic...... clusters. In addition, we propose a new way to present the information in a given set of clusters based on the significance of the clusters....

  19. Cosmology with cluster surveys

    Indian Academy of Sciences (India)

    Subhabrata Majumdar

    2004-10-01

    Surveys of clusters of galaxies provide us with a powerful probe of the density and nature of the dark energy. The red-shift distribution of detected clusters is highly sensitive to the dark energy equation of state parameter . Upcoming Sunyaev–Zel'dovich (SZ) surveys would provide us large yields of clusters to very high red-shifts. Self-calibration of cluster scaling relations, possible for such a huge sample, would be able to constrain systematic biases on mass estimators. Combining cluster red-shift abundance with limited mass follow-up and cluster mass power spectrum can then give constraints on , as well as on 8 and to a few per cents.

  20. CSR in Industrial Clusters

    DEFF Research Database (Denmark)

    Lund-Thomsen, Peter; Pillay, Renginee G.

    2012-01-01

    Purpose – The paper seeks to review the literature on CSR in industrial clusters in developing countries, identifying the main strengths, weaknesses, and gaps in this literature, pointing to future research directions and policy implications in the area of CSR and industrial cluster development...... in this field and their comments incorporated in the final version submitted to Corporate Governance. Findings – The article traces the origins of the debate on industrial clusters and CSR in developing countries back to the early 1990s when clusters began to be seen as an important vehicle for local economic...... development in the South. At the turn of the millennium the industrial cluster debate expanded as clusters were perceived as a potential source of poverty reduction, while their role in promoting CSR among small and medium-sized enterprises began to take shape from 2006 onwards. At present, there is still...

  1. The complex lives of star clusters

    CERN Document Server

    Stevenson, David

    2015-01-01

    As with the author’s recent books Extreme Explosions and Under a Crimson Sun, the complex topic of star clusters is broken down and made accessible with clear links to other areas of astronomy in a language which the non-specialist can easily read and enjoy. The full range of a star cluster's lifespan is depicted, as both globular and open clusters are tracked from birth to eventual death. Why is it some are dense conglomerates of stars while others are looser associations? Are the young, brilliant clusters seen in neighboring galaxies such as the Large Magellanic Cloud, M33 or M82 analogous to the ancient globulars seen in the Milky Way? How will these clusters change as their stars wane and die? More interestingly, how does living in a dense star cluster affect the fates of the stars and any attendant planets that accompany them?   Star clusters form many of the most dazzling objects in the astronomers’ catalogs. Many amateur astronomers are interested in exploring how these objects are created and wh...

  2. Towards a multidimensional root trait framework: a tree root review.

    Science.gov (United States)

    Weemstra, Monique; Mommer, Liesje; Visser, Eric J W; van Ruijven, Jasper; Kuyper, Thomas W; Mohren, Godefridus M J; Sterck, Frank J

    2016-09-01

    Contents 1159 I. 1159 II. 1161 III. 1164 IV. 1166 1167 References 1167 SUMMARY: The search for a root economics spectrum (RES) has been sparked by recent interest in trait-based plant ecology. By analogy with the one-dimensional leaf economics spectrum (LES), fine-root traits are hypothesised to match leaf traits which are coordinated along one axis from resource acquisitive to conservative traits. However, our literature review and meta-level analysis reveal no consistent evidence of an RES mirroring an LES. Instead the RES appears to be multidimensional. We discuss three fundamental differences contributing to the discrepancy between these spectra. First, root traits are simultaneously constrained by various environmental drivers not necessarily related to resource uptake. Second, above- and belowground traits cannot be considered analogues, because they function differently and might not be related to resource uptake in a similar manner. Third, mycorrhizal interactions may offset selection for an RES. Understanding and explaining the belowground mechanisms and trade-offs that drive variation in root traits, resource acquisition and plant performance across species, thus requires a fundamentally different approach than applied aboveground. We therefore call for studies that can functionally incorporate the root traits involved in resource uptake, the complex soil environment and the various soil resource uptake mechanisms - particularly the mycorrhizal pathway - in a multidimensional root trait framework. PMID:27174359

  3. Clustering aspects in nuclear structure functions

    CERN Document Server

    Hirai, M; Saito, K; Watanabe, T

    2010-01-01

    For understanding an anomalous nuclear effect experimentally observed for the beryllium-9 nucleus at the Thomas Jefferson National Accelerator Facility (JLab), clustering aspects are studied in structure functions of deep inelastic lepton-nucleus scattering by using momentum distributions calculated in antisymmetrized (or fermionic) molecular dynamics (AMD) and also in a simple shell model for comparison. According to the AMD, the Be-9 nucleus consists of two alpha-like clusters with a surrounding neutron. The clustering produces high-momentum components in nuclear wave functions, which affects nuclear modifications of the structure functions. We investigated whether clustering features could appear in the structure function F_2 of Be-9 along with studies for other light nuclei. We found that nuclear modifications of F_2 are similar in both AMD and shell models within our simple convolution description although there are slight differences in Be-9. It indicates that the anomalous Be-9 result should be explain...

  4. Mobility of large clusters on a semiconductor surface: Kinetic Monte Carlo simulation results

    Science.gov (United States)

    M, Esen; A, T. Tüzemen; M, Ozdemir

    2016-01-01

    The mobility of clusters on a semiconductor surface for various values of cluster size is studied as a function of temperature by kinetic Monte Carlo method. The cluster resides on the surface of a square grid. Kinetic processes such as the diffusion of single particles on the surface, their attachment and detachment to/from clusters, diffusion of particles along cluster edges are considered. The clusters considered in this study consist of 150-6000 atoms per cluster on average. A statistical probability of motion to each direction is assigned to each particle where a particle with four nearest neighbors is assumed to be immobile. The mobility of a cluster is found from the root mean square displacement of the center of mass of the cluster as a function of time. It is found that the diffusion coefficient of clusters goes as D = A(T)Nα where N is the average number of particles in the cluster, A(T) is a temperature-dependent constant and α is a parameter with a value of about -0.64 < α < -0.75. The value of α is found to be independent of cluster sizes and temperature values (170-220 K) considered in this study. As the diffusion along the perimeter of the cluster becomes prohibitive, the exponent approaches a value of -0.5. The diffusion coefficient is found to change by one order of magnitude as a function of cluster size.

  5. Structures in Galaxy Clusters

    CERN Document Server

    Escalera, E; Girardi, M; Giuricin, G; Mardirossian, F; Mazure, A; Mezzetti, M

    1993-01-01

    The analysis of the presence of substructures in 16 well-sampled clusters of galaxies suggests a stimulating hypothesis: Clusters could be classified as unimodal or bimodal, on the basis of to the sub-clump distribution in the {\\em 3-D} space of positions and velocities. The dynamic study of these clusters shows that their fundamental characteristics, in particular the virial masses, are not severely biased by the presence of subclustering if the system considered is bound.

  6. Cluster Symmetries and Dynamics

    Directory of Open Access Journals (Sweden)

    Freer Martin

    2016-01-01

    Full Text Available Many light nuclei display behaviour that indicates that rather than behaving as an A-body systems, the protons and neutrons condense into clusters. The α-particle is the most obvious example of such clustering. This contribution examines the role of such α-clustering on the structure, symmetries and dynamics of the nuclei 8Be, 12C and 16O, recent experimental measurements and future perspectives.

  7. Clustering Techniques in Bioinformatics

    Directory of Open Access Journals (Sweden)

    Muhammad Ali Masood

    2015-01-01

    Full Text Available Dealing with data means to group information into a set of categories either in order to learn new artifacts or understand new domains. For this purpose researchers have always looked for the hidden patterns in data that can be defined and compared with other known notions based on the similarity or dissimilarity of their attributes according to well-defined rules. Data mining, having the tools of data classification and data clustering, is one of the most powerful techniques to deal with data in such a manner that it can help researchers identify the required information. As a step forward to address this challenge, experts have utilized clustering techniques as a mean of exploring hidden structure and patterns in underlying data. Improved stability, robustness and accuracy of unsupervised data classification in many fields including pattern recognition, machine learning, information retrieval, image analysis and bioinformatics, clustering has proven itself as a reliable tool. To identify the clusters in datasets algorithm are utilized to partition data set into several groups based on the similarity within a group. There is no specific clustering algorithm, but various algorithms are utilized based on domain of data that constitutes a cluster and the level of efficiency required. Clustering techniques are categorized based upon different approaches. This paper is a survey of few clustering techniques out of many in data mining. For the purpose five of the most common clustering techniques out of many have been discussed. The clustering techniques which have been surveyed are: K-medoids, K-means, Fuzzy C-means, Density-Based Spatial Clustering of Applications with Noise (DBSCAN and Self-Organizing Map (SOM clustering.

  8. Response of four cotton genotypes to N fertilization for root hydraulic conductance and lint yield

    Science.gov (United States)

    In controlled environments, hydraulic conductance of cotton (Gossypium hirsutum L.) roots is affected by nitrate supply. Limited information is available on the influence of N on cotton root hydraulic conductance under field conditions. The objective of this study was to determine the effect of N fe...

  9. Monitoring cotton root rot progression within a growing season using airborne multispectral imagery

    Science.gov (United States)

    Cotton root rot, caused by the fungus Phymatotrichopsis omnivora, is a serious and destructive disease affecting cotton production in the southwestern United States. Accurate delineation of cotton root rot infections is important for cost-effective management of the disease. The objective of this st...

  10. Comparison of airborne multispectral and hyperspectral imagery for mapping cotton root rot

    Science.gov (United States)

    Cotton root rot, caused by the soilborne fungus, Phymatotrichum omnivorum, is a major cotton disease affecting cotton production in the southwestern and south central U.S. Accurate delineation of root rot infestations is necessary for cost-effective management of the disease. The objective of this s...

  11. Advances and considerations in technologies for growing, imaging, and analyzing 3-D root system architecture

    Science.gov (United States)

    The ability of a plant to mine the soil for nutrients and water is determined by how, where, and when roots are arranged in the soil matrix. The capacity of plant to maintain or improve its yield under limiting conditions, such as nutrient deficiency or drought, is affected by root system architectu...

  12. Effects of Tomato Root Exudates on Meloidogyne incognita.

    Science.gov (United States)

    Yang, Guodong; Zhou, Baoli; Zhang, Xinyu; Zhang, Zijun; Wu, Yuanyuan; Zhang, Yiming; Lü, Shuwen; Zou, Qingdao; Gao, Yuan; Teng, Long

    2016-01-01

    Plant root exudates affect root-knot nematodes egg hatch. Chemicals in root exudates can attract nematodes to the roots or result in repellence, motility inhibition or even death. However, until recently little was known about the relationship between tomato root exudates chemicals and root-knot nematodes. In this study, root exudates were extracted from three tomato rootstocks with varying levels of nematode resistance: Baliya (highly resistant, HR), RS2 (moderately resistant, MR) and L-402 (highly susceptible, T). The effects of the root exudates on Meloidogyne incognita (M. incognita) egg hatch, survival and chemotaxis of second-stage juveniles (J2) were explored. The composition of the root exudates was analysed by gas chromatography/mass spectrometry (GC/MS) prior to and following M. incognita inoculation. Four compounds in root exudates were selected for further analysis and their allopathic effect on M. incognita were investigated. Root exudates from each tomato rootstocks (HR, MR and T strains) suppressed M. incognita egg hatch and increased J2 mortality, with the highest rate being observed in the exudates from the HR plants. Exudate from HR variety also repelled M. incognita J2 while that of the susceptible plant, T, was demonstrated to be attractive. The relative amount of esters and phenol compounds in root exudates from HR and MR tomato rootstocks increased notably after inoculation. Four compounds, 2,6-Di-tert-butyl-p-cresol, L-ascorbyl 2,6-dipalmitate, dibutyl phthalate and dimethyl phthalate increased significantly after inoculation. The egg hatch of M. incognita was suppressed by each of the compound. L-ascorbyl 2,6-dipalmitate showed the most notable effect in a concentration-dependent manner. All four compounds were associated with increased J2 mortality. The greatest effect was observed with dimethyl phthalate at 2 mmol·L-1. Dibutyl phthalate was the only compound observed to repel M. incognita J2 with no effect being detected in the other

  13. Effects of Tomato Root Exudates on Meloidogyne incognita.

    Directory of Open Access Journals (Sweden)

    Guodong Yang

    Full Text Available Plant root exudates affect root-knot nematodes egg hatch. Chemicals in root exudates can attract nematodes to the roots or result in repellence, motility inhibition or even death. However, until recently little was known about the relationship between tomato root exudates chemicals and root-knot nematodes. In this study, root exudates were extracted from three tomato rootstocks with varying levels of nematode resistance: Baliya (highly resistant, HR, RS2 (moderately resistant, MR and L-402 (highly susceptible, T. The effects of the root exudates on Meloidogyne incognita (M. incognita egg hatch, survival and chemotaxis of second-stage juveniles (J2 were explored. The composition of the root exudates was analysed by gas chromatography/mass spectrometry (GC/MS prior to and following M. incognita inoculation. Four compounds in root exudates were selected for further analysis and their allopathic effect on M. incognita were investigated. Root exudates from each tomato rootstocks (HR, MR and T strains suppressed M. incognita egg hatch and increased J2 mortality, with the highest rate being observed in the exudates from the HR plants. Exudate from HR variety also repelled M. incognita J2 while that of the susceptible plant, T, was demonstrated to be attractive. The relative amount of esters and phenol compounds in root exudates from HR and MR tomato rootstocks increased notably after inoculation. Four compounds, 2,6-Di-tert-butyl-p-cresol, L-ascorbyl 2,6-dipalmitate, dibutyl phthalate and dimethyl phthalate increased significantly after inoculation. The egg hatch of M. incognita was suppressed by each of the compound. L-ascorbyl 2,6-dipalmitate showed the most notable effect in a concentration-dependent manner. All four compounds were associated with increased J2 mortality. The greatest effect was observed with dimethyl phthalate at 2 mmol·L-1. Dibutyl phthalate was the only compound observed to repel M. incognita J2 with no effect being detected in

  14. Genetic analysis of the gravitropic set-point angle in lateral roots of arabidopsis

    Science.gov (United States)

    Mullen, J. L.; Hangarter, R. P.

    2003-05-01

    Research on gravity responses in plants has mostly focused on primary roots and shoots, which typically orient to a vertical orientation. However, the distribution of lateral organs and their characteristically non-vertical growth orientation are critical for the determination of plant form. For example, in Arabidopsis, when lateral roots emerge from the primary root, they grow at a nearly horizontal orientation. As they elongate, the roots slowly curve until they eventually reach a vertical orientation. The regulation of this lateral root orientation is an important component affecting overall root system architecture. We found that this change in orientation is not simply due to the onset of gravitropic competence, as non-vertical lateral roots are capable of both positive and negative gravitropism. Thus, the horizontal growth of new lateral roots appears to be determined by what is called the gravitropic set-point angle (GSA). This developmental control of the GSA of lateral roots in Arabidopsis provides a useful system for investigating the components involved in regulating gravitropic responses. Using this system, we have identified several Arabidopsis mutants that have altered lateral root orientations but maintain normal primary root orientation.

  15. Real-time spatial analysis of root water uptake in rhizotrons

    Science.gov (United States)

    Lobet, G.; Javaux, M.; Pages, L.; Chaumont, F.; Draye, X.

    2009-04-01

    Nowadays, drought is a major constraint on crop production and becomes increasingly prevalent. The availability of water for plants defines constraints for stomatal conductance (which affects photosynthesis and yield) and is critical at several sensitive phenological stages, such as flowering and grain filling (some may have irreversible effects). It is therefore important to improve the capacity of plants to use and uptake water in various environmental conditions. The availability of water is defined by (i) soil exploration (root architecture), (ii) conductivity of individual root segments and (iii) quantity and capacity of bulk-to-rhizosphere water flow. These factors must be considered simultaneously if we aim at tailoring root architecture to improve water stress tolerance. We propose a combination of tools based on thin 2D rhizotrons that allows both root architecture and soil water content to be monitored. This experimental platform is combined with two models. One generates a 3D root system with hydraulic conductivities of individual roots as a function of age, type… The second model (R-SWMS) simulates root water uptake and soil water transfer, based on 3D root and soil hydraulic properties. This platform is used to study how various aspects of root systems dynamics (such as regulation by aquaporins or ABA, root architecture) interfere with root water uptake using a quantitative approach.

  16. Effects of Increased Summer Precipitation and Nitrogen Addition on Root Decomposition in a Temperate Desert.

    Directory of Open Access Journals (Sweden)

    Hongmei Zhao

    Full Text Available Climate change scenarios that include precipitation shifts and nitrogen (N deposition are impacting carbon (C budgets in arid ecosystems. Roots constitute an important part of the C cycle, but it is still unclear which factors control root mass loss and nutrient release in arid lands.Litterbags were used to investigate the decomposition rate and nutrient dynamics in root litter with water and N-addition treatments in the Gurbantunggut Desert in China. Water and N addition had no significant effect on root mass loss and the N and phosphorus content of litter residue. The loss of root litter and nutrient releases were strongly controlled by the initial lignin content and the lignin:N ratio, as evidenced by the negative correlations between decomposition rate and litter lignin content and the lignin:N ratio. Fine roots of Seriphidium santolinum (with higher initial lignin content had a slower decomposition rate in comparison to coarse roots.Results from this study indicate that small and temporary changes in rainfall and N deposition do not affect root decomposition patterns in the Gurbantunggut Desert. Root decomposition rates were significantly different between species, and also between fine and coarse roots, and were determined by carbon components, especially lignin content, suggesting that root litter quality may be the primary driver of belowground carbon turnover.

  17. Carbon and nitrogen status of decomposing roots in three adjacent coniferous plantations

    Directory of Open Access Journals (Sweden)

    Jaeyeob Jeong

    2014-07-01

    Full Text Available This study evaluated the carbon (C and nitrogen (N status of decomposing roots in three adjacent plantations consisting of one deciduous (larch: Larix leptolepis and two evergreen (red pine: Pinus densiflora; rigitaeda pine: P. rigitaeda species planted in the same year (1963 under similar site conditions. The mass loss rates and C and N status of three diameter classes of roots (UF < 2 mm, F 2-5 mm, CF 5-10 mm in diameter were examined in the upper 15 cm of the mineral soil using in situ buried root bags for 496 days.The remaining mass of decomposing roots was significantly higher for larch (69.0% than for red pine (59.6% or rigitaeda pine (59.1% over 496 days. The mass loss rates of decomposing roots did not differ significantly among the three root diameter classes, but the C and N status of decomposing roots was affected by the tree species. The larch roots showed low C concentrations but high N concentrations, C and N remaining compared to the pine roots over the study period. The results indicate that the substrate quality indicators of roots were not attributed to the mass loss rates, C and N status of decomposing roots in three coniferous tree species grown under similar environmental conditions.

  18. Modelling Rooting Depth and Soil Strength in a Drying Soil Profile

    Science.gov (United States)

    Bengough

    1997-06-01

    A combined root growth and water extraction model is described that simulates the affects of mechanical impedance on root elongation in soil. The model simulates the vertical redistribution of water in the soil profile, water uptake by plant roots, and the effects of decreasing water content on increasing soil strength and decreasing the root elongation rate. The modelling approach is quite general and can be applied to any soil for which a relation can be defined between root elongation and penetrometer resistance. By definition this excludes soils that contain a large proportion of continuous channels through which roots can grow unimpeded. Root elongation rate is calculated as a function of the penetrometer resistance which is determined by the soil water content. Use of the model is illustrated using input data for a sandy loam soil. The results confirm reports in the literature that the depth of water extraction can exceed the rooting depth. The increase in mechanical impedance to root growth due to this water extraction restricted the maximum rooting depth attained, and this limited the depth of soil from which a crop could extract water and nutrients. This study highlighted the lack of published data sets for single crop/soil combinations containing both the strength/root growth information and the hydraulic conductivity characteristics necessary for this type of model. Copyright 1997 Academic Press Limited PMID:9344728

  19. Auxin, ethylene and the regulation of root growth under mechanical impedance

    Science.gov (United States)

    Sharma, Rameshwar; Santisree, Parankusam; Nongmaithem, Sapana; Sreelakshmi, Yellamaraju

    2012-07-01

    Among the multitude functions performed by plant roots, little information is available about the mechanisms that allow roots to overcome the soil resistance, in order to grow in the soil to obtain water and nutrient. Tomato (Solanum lycopersicum) seedlings grown on horizontally placed agar plates showed a progressive decline in the root length with the increasing impedance of agar media. The incubation with 1-methylcyclopropane (1-MCP), an inhibitor of ethylene perception, led to aerial growth of roots. In contrast, in absence of 1-MCP control roots grew horizontally anchored to the agar surface. Though 1-MCP-treated and control seedlings showed differential ability to penetrate in the agar, the inhibition of root elongation was nearly similar for both treatments. While increased mechanical impedance also progressively impaired hypocotyl elongation in 1-MCP treated seedlings, it did not affect the hypocotyl length of control seedlings. The decline in root elongation was also associated with increased expression of DR5::GUS activity in the root tip signifying accumulation of auxin at the root tip. The increased expression of DR5::GUS activity in the root tip was also observed in 1-MCP treated seedlings, indicating independence of this response from ethylene signaling. Our results indicate operation of a sensing mechanism in root that likely operates independently of ethylene but involves auxin to determine the degree of impedance of the substratum.

  20. Using thermodynamics to assess biotic and abiotic impediments to root water uptake

    Science.gov (United States)

    Bechmann, Marcel; Hildebrandt, Anke; Kleidon, Axel

    2016-04-01

    Root water uptake has been the subject of extensive research, dealing with understanding the processes limiting transpiration and understanding strategies of plants to avoid water stress. Many of those studies use models of water flow from the soil through the plant into the atmosphere to learn about biotic and abiotic factors affecting plant water relations. One important question in this context is to identify those processes that are most limiting to water transport, and specifically whether these processes lie within the plant or the soil? Here, we propose to use a thermodynamic formulation of root water uptake to answer this question. The method allows us to separate the energy exported at the root collar into a sum of energy fluxes related to all processes along the flow path, notably including the effect of increasing water retention in drier soils. Evaluation of the several contributions allows us to identify and rank the processes by how much these impede water flow from the soil to the atmosphere. The application of this approach to a complex 3-dimensional root water uptake model reveals insights on the role of root versus soil resistances to limit water flow. We investigate the efficiency of root water uptake in an ensemble of root systems with varying root hydraulic properties. While root morphology is kept the same, root radial and axial resistances are artificially varied. Starting with entirely young systems (uptake roots, high radial, low axial conductance) we increasingly add older roots (transport roots, high axial, low radial conductance) to improve transport within root systems. This yields a range of root hydraulic architectures, where the extremes are limited either by radial uptake capacity or low capacity to transport water along the root system. We model root water uptake in this range of root systems with a 3-dimensional root water uptake model in two different soils, applying constant flux boundary conditions in a dry down experiment and

  1. 15th Cluster workshop

    CERN Document Server

    Laakso, Harri; Escoubet, C. Philippe; The Cluster Active Archive : Studying the Earth’s Space Plasma Environment

    2010-01-01

    Since the year 2000 the ESA Cluster mission has been investigating the small-scale structures and processes of the Earth's plasma environment, such as those involved in the interaction between the solar wind and the magnetospheric plasma, in global magnetotail dynamics, in cross-tail currents, and in the formation and dynamics of the neutral line and of plasmoids. This book contains presentations made at the 15th Cluster workshop held in March 2008. It also presents several articles about the Cluster Active Archive and its datasets, a few overview papers on the Cluster mission, and articles reporting on scientific findings on the solar wind, the magnetosheath, the magnetopause and the magnetotail.

  2. Galaxy Clusters with Chandra

    CERN Document Server

    Forman, W; Markevitch, M L; Vikhlinin, A A; Churazov, E

    2002-01-01

    We discuss Chandra results related to 1) cluster mergers and cold fronts and 2) interactions between relativistic plasma and hot cluster atmospheres. We describe the properties of cold fronts using NGC1404 in the Fornax cluster and A3667 as examples. We discuss multiple surface brightness discontinuities in the cooling flow cluster ZW3146. We review the supersonic merger underway in CL0657. Finally, we summarize the interaction between plasma bubbles produced by AGN and hot gas using M87 and NGC507 as examples.

  3. Management of cluster headache.

    Science.gov (United States)

    Tfelt-Hansen, Peer C; Jensen, Rigmor H

    2012-07-01

    The prevalence of cluster headache is 0.1% and cluster headache is often not diagnosed or misdiagnosed as migraine or sinusitis. In cluster headache there is often a considerable diagnostic delay - an average of 7 years in a population-based survey. Cluster headache is characterized by very severe or severe orbital or periorbital pain with a duration of 15-180 minutes. The cluster headache attacks are accompanied by characteristic associated unilateral symptoms such as tearing, nasal congestion and/or rhinorrhoea, eyelid oedema, miosis and/or ptosis. In addition, there is a sense of restlessness and agitation. Patients may have up to eight attacks per day. Episodic cluster headache (ECH) occurs in clusters of weeks to months duration, whereas chronic cluster headache (CCH) attacks occur for more than 1 year without remissions. Management of cluster headache is divided into acute attack treatment and prophylactic treatment. In ECH and CCH the attacks can be treated with oxygen (12 L/min) or subcutaneous sumatriptan 6 mg. For both oxygen and sumatriptan there are two randomized, placebo-controlled trials demonstrating efficacy. In both ECH and CCH, verapamil is the prophylactic drug of choice. Verapamil 360 mg/day was found to be superior to placebo in one clinical trial. In clinical practice, daily doses of 480-720 mg are mostly used. Thus, the dose of verapamil used in cluster headache treatment may be double the dose used in cardiology, and with the higher doses the PR interval should be checked with an ECG. At the start of a cluster, transitional preventive treatment such as corticosteroids or greater occipital nerve blockade can be given. In CCH and in long-standing clusters of ECH, lithium, methysergide, topiramate, valproic acid and ergotamine tartrate can be used as add-on prophylactic treatment. In drug-resistant CCH, neuromodulation with either occipital nerve stimulation or deep brain stimulation of the hypothalamus is an alternative treatment strategy

  4. [Affective dependency].

    Science.gov (United States)

    Scantamburlo, G; Pitchot, W; Ansseau, M

    2013-01-01

    Affective dependency is characterized by emotional distress (insecure attachment) and dependency to another person with a low self-esteem and reassurance need. The paper proposes a reflection on the definition of emotional dependency and the confusion caused by various denominations. Overprotective and authoritarian parenting, cultural and socio-environmental factors may contribute to the development of dependent personality. Psychological epigenetic factors, such as early socio-emotional trauma could on neuronal circuits in prefronto-limbic regions that are essential for emotional behaviour.We also focus on the interrelations between dependent personality, domestic violence and addictions. The objective for the clinician is to propose a restoration of self-esteem and therapeutic strategies focused on autonomy. PMID:23888587

  5. [Affective dependency].

    Science.gov (United States)

    Scantamburlo, G; Pitchot, W; Ansseau, M

    2013-01-01

    Affective dependency is characterized by emotional distress (insecure attachment) and dependency to another person with a low self-esteem and reassurance need. The paper proposes a reflection on the definition of emotional dependency and the confusion caused by various denominations. Overprotective and authoritarian parenting, cultural and socio-environmental factors may contribute to the development of dependent personality. Psychological epigenetic factors, such as early socio-emotional trauma could on neuronal circuits in prefronto-limbic regions that are essential for emotional behaviour.We also focus on the interrelations between dependent personality, domestic violence and addictions. The objective for the clinician is to propose a restoration of self-esteem and therapeutic strategies focused on autonomy.

  6. A Clustering Classification of Spare Parts for Improving Inventory Policies

    Science.gov (United States)

    Meri Lumban Raja, Anton; Ai, The Jin; Diar Astanti, Ririn

    2016-02-01

    Inventory policies in a company may consist of storage, control, and replenishment policy. Since the result of common ABC inventory classification can only affect the replenishment policy, we are proposing a clustering based classification technique as a basis for developing inventory policy especially for storage and control policy. Hierarchical clustering procedure is used after clustering variables are defined. Since hierarchical clustering procedure requires metric variables only, therefore a step to convert non-metric variables to metric variables is performed. The clusters resulted from the clustering techniques are analyzed in order to define each cluster characteristics. Then, the inventory policies are determined for each group according to its characteristics. A real data, which consists of 612 items from a local manufacturer's spare part warehouse, are used in the research of this paper to show the applicability of the proposed methodology.

  7. Corrections for rooting volume and plant size reveal negative effects of neighbour presence on root allocation in pea

    NARCIS (Netherlands)

    Chen, B.J.W.; During, H.J.; Vermeulen, P.J.; Kroon, de H.; Poorter, H.; Anten, N.P.R.

    2015-01-01

    Plants are able to detect the presence of their neighbours belowground. The associated root responses may affect plant performance, plant-plant interactions and community dynamics, but the extent and direction of these responses is heavily debated. Some studies suggest that plants will over-prolifer

  8. Corrections for rooting volume and plant size reveal negative effects of neighbour presence on root allocation in pea

    NARCIS (Netherlands)

    Chen, B.; During, H.J.; Vermeulen, P.J.; Kroon, de H.; Poorter, H.; Anten, N.P.R.

    2015-01-01

    1. Plants are able to detect the presence of their neighbours below-ground. The associated root responses may affect plant performance, plant–plant interactions and community dynamics, but the extent and direction of these responses is heavily debated. 2. Some studies suggest that plants will over-p

  9. Polyamine-Induced Rapid Root Abscission in Azolla pinnata

    Directory of Open Access Journals (Sweden)

    Sushma Gurung

    2012-01-01

    Full Text Available Floating ferns of the genus Azolla detach their roots under stress conditions, a unique adaptive response termed rapid root abscission. We found that Azolla pinnata plants exhibited dose-dependent rapid root abscission in response to the polyamines spermidine and spermine after a substantial time lag (>20 min. The duration of the time lag decreased in response to high pH and high temperature whereas high light intensity increased the time lag and markedly lowered the rate of abscission. The oxidation products of polyamines, 1,3-diaminopropane, β-alanine and hydrogen peroxide all failed to initiate root abscission, and hydroxyethyl hydrazine, an inhibitor of polyamine oxidase, did not inhibit spermine-induced root abscission. Exposure of A. pinnata to the polyamines did not result in detectable release of NO and did not affect nitrite-dependent NO production. The finding of polyamine-induced rapid root abscission provides a facile assay for further study of the mode of action of polyamines in plant stress responses.

  10. Polyamine-Induced Rapid Root Abscission in Azolla pinnata.

    Science.gov (United States)

    Gurung, Sushma; Cohen, Michael F; Fukuto, Jon; Yamasaki, Hideo

    2012-01-01

    Floating ferns of the genus Azolla detach their roots under stress conditions, a unique adaptive response termed rapid root abscission. We found that Azolla pinnata plants exhibited dose-dependent rapid root abscission in response to the polyamines spermidine and spermine after a substantial time lag (>20 min). The duration of the time lag decreased in response to high pH and high temperature whereas high light intensity increased the time lag and markedly lowered the rate of abscission. The oxidation products of polyamines, 1,3-diaminopropane, β-alanine and hydrogen peroxide all failed to initiate root abscission, and hydroxyethyl hydrazine, an inhibitor of polyamine oxidase, did not inhibit spermine-induced root abscission. Exposure of A. pinnata to the polyamines did not result in detectable release of NO and did not affect nitrite-dependent NO production. The finding of polyamine-induced rapid root abscission provides a facile assay for further study of the mode of action of polyamines in plant stress responses. PMID:22997568

  11. Piriformospora indica Stimulates Root Metabolism of Arabidopsis thaliana.

    Science.gov (United States)

    Strehmel, Nadine; Mönchgesang, Susann; Herklotz, Siska; Krüger, Sylvia; Ziegler, Jörg; Scheel, Dierk

    2016-01-01

    Piriformospora indica is a root-colonizing fungus, which interacts with a variety of plants including Arabidopsis thaliana. This interaction has been considered as mutualistic leading to growth promotion of the host. So far, only indolic glucosinolates and phytohormones have been identified as key players. In a comprehensive non-targeted metabolite profiling study, we analyzed Arabidopsis thaliana's roots, root exudates, and leaves of inoculated and non-inoculated plants by ultra performance liquid chromatography/electrospray ionization quadrupole-time-of-flight mass spectrometry (UPLC/(ESI)-QTOFMS) and gas chromatography/electron ionization quadrupole mass spectrometry (GC/EI-QMS), and identified further biomarkers. Among them, the concentration of nucleosides, dipeptides, oligolignols, and glucosinolate degradation products was affected in the exudates. In the root profiles, nearly all metabolite levels increased upon co-cultivation, like carbohydrates, organic acids, amino acids, glucosinolates, oligolignols, and flavonoids. In the leaf profiles, we detected by far less significant changes. We only observed an increased concentration of organic acids, carbohydrates, ascorbate, glucosinolates and hydroxycinnamic acids, and a decreased concentration of nitrogen-rich amino acids in inoculated plants. These findings contribute to the understanding of symbiotic interactions between plant roots and fungi of the order of Sebacinales and are a valid source for follow-up mechanistic studies, because these symbioses are particular and clearly different from interactions of roots with mycorrhizal fungi or dark septate endophytes. PMID:27399695

  12. Cell Wall Heterogeneity in Root Development of Arabidopsis

    Science.gov (United States)

    Somssich, Marc; Khan, Ghazanfar Abbas; Persson, Staffan

    2016-01-01

    Plant cell walls provide stability and protection to plant cells. During growth and development the composition of cell walls changes, but provides enough strength to withstand the turgor of the cells. Hence, cell walls are highly flexible and diverse in nature. These characteristics are important during root growth, as plant roots consist of radial patterns of cells that have diverse functions and that are at different developmental stages along the growth axis. Young stem cell daughters undergo a series of rapid cell divisions, during which new cell walls are formed that are highly dynamic, and that support rapid anisotropic cell expansion. Once the cells have differentiated, the walls of specific cell types need to comply with and support different cell functions. For example, a newly formed root hair needs to be able to break through the surrounding soil, while endodermal cells modify their walls at distinct positions to form Casparian strips between them. Hence, the cell walls are modified and rebuilt while cells transit through different developmental stages. In addition, the cell walls of roots readjust to their environment to support growth and to maximize nutrient uptake. Many of these modifications are likely driven by different developmental and stress signaling pathways. However, our understanding of how such pathways affect cell wall modifications and what enzymes are involved remain largely unknown. In this review we aim to compile data linking cell wall content and re-modeling to developmental stages of root cells, and dissect how root cell walls respond to certain environmental changes. PMID:27582757

  13. Cell Wall Heterogeneity in Root Development of Arabidopsis.

    Science.gov (United States)

    Somssich, Marc; Khan, Ghazanfar Abbas; Persson, Staffan

    2016-01-01

    Plant cell walls provide stability and protection to plant cells. During growth and development the composition of cell walls changes, but provides enough strength to withstand the turgor of the cells. Hence, cell walls are highly flexible and diverse in nature. These characteristics are important during root growth, as plant roots consist of radial patterns of cells that have diverse functions and that are at different developmental stages along the growth axis. Young stem cell daughters undergo a series of rapid cell divisions, during which new cell walls are formed that are highly dynamic, and that support rapid anisotropic cell expansion. Once the cells have differentiated, the walls of specific cell types need to comply with and support different cell functions. For example, a newly formed root hair needs to be able to break through the surrounding soil, while endodermal cells modify their walls at distinct positions to form Casparian strips between them. Hence, the cell walls are modified and rebuilt while cells transit through different developmental stages. In addition, the cell walls of roots readjust to their environment to support growth and to maximize nutrient uptake. Many of these modifications are likely driven by different developmental and stress signaling pathways. However, our understanding of how such pathways affect cell wall modifications and what enzymes are involved remain largely unknown. In this review we aim to compile data linking cell wall content and re-modeling to developmental stages of root cells, and dissect how root cell walls respond to certain environmental changes. PMID:27582757

  14. Ultrasonic cleaning of root canals

    Science.gov (United States)

    Verhaagen, Bram; Boutsioukis, Christos; Jiang, Lei-Meng; Macedo, Ricardo; van der Sluis, Luc; Versluis, Michel

    2011-11-01

    A crucial step during a dental root canal treatment is irrigation, where an antimicrobial fluid is injected into the root canal system to eradicate all bacteria. Agitation of the fluid using an ultrasonically vibrating miniature file has shown significant improvement in cleaning efficacy over conventional syringe irrigation. However, the physical mechanisms underlying the cleaning process, being acoustic streaming, cavitation or chemical activity, and combinations thereof, are not fully understood. High-speed imaging allows us to visualize the flow pattern and cavitation in a root canal model at microscopic scales, at timescales relevant to the cleaning processes (microseconds). MicroPIV measurements of the induced acoustic streaming are coupled to the oscillation characteristics of the file as simulated numerically and measured with a laser vibrometer. The results give new insight into the role of acoustic streaming and the importance of the confinement for the cleaning of root canals.

  15. Root coverage with bridge flap

    Directory of Open Access Journals (Sweden)

    Pushpendra Kumar Verma

    2013-01-01

    Full Text Available Gingival recession in anterior teeth is a common concern due to esthetic reasons or root sensitivity. Gingival recession, especially in multiple anterior teeth, is of huge concern due to esthetic reasons. Various mucogingival surgeries are available for root coverage. This case report presents a new bridge flap technique, which allows the dentist not only to cover the previously denuded root surfaces but also to increase the zone of attached gingiva at a single step. In this case, a coronally advanced flap along with vestibular deepening technique was used as root coverage procedure for the treatment of multiple recession-type defect. Here, vestibular deepening technique is used to increase the width of the attached gingiva. The predictability of this procedure results in an esthetically healthy periodontium, along with gain in keratinized tissue and good patient′s acceptance.

  16. Root Patterns in Heterogeneous Soils

    Science.gov (United States)

    Dara, A.; Moradi, A. B.; Carminati, A.; Oswald, S. E.

    2010-12-01

    Heterogeneous water availability is a typical characteristic of soils in which plant roots grow. Despite the intrinsic heterogeneity of soil-plant water relations, we know little about the ways how plants respond to local environmental quality. Furthermore, increasing use of soil amendments as partial water reservoirs in agriculture calls for a better understanding of plant response to soil heterogeneity. Neutron radiography is a non-invasive imaging that is highly sensitive to water and root distribution and that has high capability for monitoring spatial and temporal soil-plant water relations in heterogeneous systems. Maize plants were grown in 25 x 30 x 1 cm aluminum slabs filled with sandy soil. On the right side of the compartments a commercial water absorbent (Geohumus) was mixed with the soil. Geohumus was distributed with two patterns: mixed homogeneously with the soil, and arranged as 1-cm diameter aggregates (Fig. 1). Two irrigation treatments were applied: sufficient water irrigation and moderate water stress. Neutron radiography started 10 days after planting and has been performed twice a day for one week. At the end of the experiment, the containers were opened, the root were removed and dry root weight in different soil segments were measured. Neutron radiography showed root growth tendency towards Geohumus treated parts and preferential water uptake from Geohumus aggregates. Number and length of fine lateral roots were lower in treated areas compared to the non-treated zone and to control soil. Although corn plants showed an overall high proliferation towards the soil water sources, they decreased production of branches and fine root when water was more available near the main root parts. However there was 50% higher C allocation in roots grown in Geohumus compartments, as derived by the relative dry weight of root. The preferential C allocation in treated regions was higher when plants grew under water stress. We conclude that in addition to the

  17. Roots of unity in orders

    OpenAIRE

    Lenstra Jr., H. W.; Silverberg, A.

    2015-01-01

    We give deterministic polynomial-time algorithms that, given an order, compute the primitive idempotents and determine a set of generators for the group of roots of unity in the order. Also, we show that the discrete logarithm problem in the group of roots of unity can be solved in polynomial time. As an auxiliary result, we solve the discrete logarithm problem for certain unit groups in finite rings. Our techniques, which are taken from commutative algebra, may have further potential in the ...

  18. Document Clustering Based on Semi-Supervised Term Clustering

    Directory of Open Access Journals (Sweden)

    Hamid Mahmoodi

    2012-05-01

    Full Text Available The study is conducted to propose a multi-step feature (term selection process and in semi-supervised fashion, provide initial centers for term clusters. Then utilize the fuzzy c-means (FCM clustering algorithm for clustering terms. Finally assign each of documents to closest associated term clusters. While most text clustering algorithms directly use documents for clustering, we propose to first group the terms using FCM algorithm and then cluster documents based on terms clusters. We evaluate effectiveness of our technique on several standard text collections and compare our results with the some classical text clustering algorithms.

  19. Frequency of the external resorptions of root apex

    Directory of Open Access Journals (Sweden)

    Opačić-Galić Vanja

    2004-01-01

    Full Text Available Root resorptions present a significant problem in endodontic therapy of the affected teeth and in dentistry in general. The objective of this study was to analyze, based on epidemiological and statistical research, the frequency of clinical incidence of pathological root resorptions in everyday practice related to localization, type of tooth, age and sex of patients. Radiographie documentation of patients treated from 1997 till 2002 at the Department of Conservative Dentistry and Endodontics, Faculty of Stomatology in Belgrade, was used as baseline for this study. Retroalveolar radiographs of teeth with visible signs of resorptions were singled out from 15654 patients' clinical records used for this study. The external resorptions were shown as radiolucent areas localized on various outer root surfaces, followed by significant or less significant resorption of lamina dura and alveolar bone. Out of all teeth analyzed in this study, 594 (3.79% showed some kind of resorption. The external resorptions were found to be more present in the upper jaw (55.10% and molars (50.30% than in the lower jaw (44.90% and single root teeth (49.70%, but in both cases without significant statistical differences. The most frequent localization of resorptions was root apex (82.44%. In regard to age, the most frequent resorptions were recorded in patients aged between 21 and 30 years (28.40%, and the lowest incidence was found in the youngest population (5.51%. The results also showed that resorptions were more frequent among the female population (59.04% than among the male population (40.96%. Based on these results, we may conclude that the external root resorptions are not a frequent clinical phenomenon. Proper and early diagnostics of such tissue pathology is one of the basic prerequisites for successful endodontic therapy of the affected root.

  20. Cosmic Web Type Dependence of Halo Clustering

    CERN Document Server

    Fisher, J D

    2016-01-01

    We use the Millennium simulation to show that halo clustering varies significantly with cosmic web type. Halos are classified as node, filament, sheet and void halos based on the eigenvalue decomposition of the velocity shear tensor. This classification allows us to examine the clustering of halos as a function of web type in different mass ranges. We find that node halos show positive bias for all mass ranges probed, even for 10^11 and 10^12 Msun/h mass bins where the clustering of the entire halo sample is anti-biased. In all mass bins filament halos show negligible bias, whereas void and sheet halos are anti-biased. The zero-crossing of the void and sheet correlation functions occur at much smaller scales Mpc/h when compared to 5the same correlation functions for the entire halo sample. Our results suggest that the mass dependence of halo clustering is rooted in the composition of web types in the mass bin. The substantial fraction of node type halos for halo masses 2 x 10^13 Msun/h leads to positive bias....

  1. Young Massive Clusters: Their Population Properties, Formation and Evolution, and Their Relation to the Ancient Globular Clusters

    CERN Document Server

    Bastian, Nate

    2016-01-01

    This review summarises the main properties of Young Massive Clusters (YMCs), including their population properties, particularly focusing on extragalactic cluster samples. We discuss potential biases and caveats that can affect the construction of cluster samples and how incompleteness effects can result in erroneous conclusions regarding the long term survival of clusters. In addition to the luminosity, mass and age distributions of the clusters, we discuss the size distribution and profile evolution of the clusters. We also briefly discuss the stellar populations within YMCs. The final part of the review focusses on the connections between YMCs and the ancient globular clusters, whether or not they are related objects and how we can use what we know about YMC formation and evolution to understand how GCs formed in the early universe and how they relate to galaxy formation/evolution.

  2. Physiological superiority of root system of inter-subspecific hybrid rice

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    @@Physiology of root system, especially root system activity,is a very important physiological trait of rice, which directly affects rice growth and development of the aerial parts and yield. Inter-subspecific hybrid rice IIyou 2070and Ilyou 419, as well as their restorer lines 2070 and Zhong419, were used to study physiological traits of rice root system. Three years research indicated that in ter-subspecific hybrid rice had root systems of physiological superiority. Results were briefly showed as the follows:

  3. Evaluation of Seeds of Science/Roots of Reading: Effective Tools for Developing Literacy through Science in the Early Grades-Light Energy Unit. CRESST Report 781

    Science.gov (United States)

    Goldschmidt, Pete; Jung, Hyekyung

    2011-01-01

    This evaluation focuses on the Seeds of Science/Roots of Reading: Effective Tools for Developing Literacy through Science in the Early Grades ("Seeds/Roots") model of science-literacy integration. The evaluation is based on a cluster randomized design of 100 teachers, half of which were in the treatment group. Multi-level models are employed to…

  4. From collisions to clusters

    DEFF Research Database (Denmark)

    Loukonen, Ville; Bork, Nicolai; Vehkamaki, Hanna

    2014-01-01

    to overcome the possible initial non-optimal collision orientations. No post-collisional cluster break up is observed. The reasons for the efficient clustering are (i) the proton transfer reaction which takes place in each of the collision simulations and (ii) the subsequent competition over the proton...

  5. Cost-Effective Clustering

    CERN Document Server

    Gottlieb, S

    2001-01-01

    Small Beowulf clusters can effectively serve as personal or group supercomputers. In such an environment, a cluster can be optimally designed for a specific problem (or a small set of codes). We discuss how theoretical analysis of the code and benchmarking on similar hardware lead to optimal systems.

  6. Coma cluster of galaxies

    Science.gov (United States)

    1999-01-01

    Atlas Image mosaic, covering 34' x 34' on the sky, of the Coma cluster, aka Abell 1656. This is a particularly rich cluster of individual galaxies (over 1000 members), most prominently the two giant ellipticals, NGC 4874 (right) and NGC 4889 (left). The remaining members are mostly smaller ellipticals, but spiral galaxies are also evident in the 2MASS image. The cluster is seen toward the constellation Coma Berenices, but is actually at a distance of about 100 Mpc (330 million light years, or a redshift of 0.023) from us. At this distance, the cluster is in what is known as the 'Hubble flow,' or the overall expansion of the Universe. As such, astronomers can measure the Hubble Constant, or the universal expansion rate, based on the distance to this cluster. Large, rich clusters, such as Coma, allow astronomers to measure the 'missing mass,' i.e., the matter in the cluster that we cannot see, since it gravitationally influences the motions of the member galaxies within the cluster. The near-infrared maps the overall luminous mass content of the member galaxies, since the light at these wavelengths is dominated by the more numerous older stellar populations. Galaxies, as seen by 2MASS, look fairly smooth and homogeneous, as can be seen from the Hubble 'tuning fork' diagram of near-infrared galaxy morphology. Image mosaic by S. Van Dyk (IPAC).

  7. Clustering Text Data Streams

    Institute of Scientific and Technical Information of China (English)

    Yu-Bao Liu; Jia-Rong Cai; Jian Yin; Ada Wai-Chee Fu

    2008-01-01

    Clustering text data streams is an important issue in data mining community and has a number of applications such as news group filtering, text crawling, document organization and topic detection and tracing etc. However, most methods are similarity-based approaches and only use the TF*IDF scheme to represent the semantics of text data and often lead to poor clustering quality. Recently, researchers argue that semantic smoothing model is more efficient than the existing TF.IDF scheme for improving text clustering quality. However, the existing semantic smoothing model is not suitable for dynamic text data context. In this paper, we extend the semantic smoothing model into text data streams context firstly. Based on the extended model, we then present two online clustering algorithms OCTS and OCTSM for the clustering of massive text data streams. In both algorithms, we also present a new cluster statistics structure named cluster profile which can capture the semantics of text data streams dynamically and at the same time speed up the clustering process. Some efficient implementations for our algorithms are also given. Finally, we present a series of experimental results illustrating the effectiveness of our technique.

  8. Brightest Cluster Galaxy Identification

    Science.gov (United States)

    Leisman, Luke; Haarsma, D. B.; Sebald, D. A.; ACCEPT Team

    2011-01-01

    Brightest cluster galaxies (BCGs) play an important role in several fields of astronomical research. The literature includes many different methods and criteria for identifying the BCG in the cluster, such as choosing the brightest galaxy, the galaxy nearest the X-ray peak, or the galaxy with the most extended profile. Here we examine a sample of 75 clusters from the Archive of Chandra Cluster Entropy Profile Tables (ACCEPT) and the Sloan Digital Sky Survey (SDSS), measuring masked magnitudes and profiles for BCG candidates in each cluster. We first identified galaxies by hand; in 15% of clusters at least one team member selected a different galaxy than the others.We also applied 6 other identification methods to the ACCEPT sample; in 30% of clusters at least one of these methods selected a different galaxy than the other methods. We then developed an algorithm that weighs brightness, profile, and proximity to the X-ray peak and centroid. This algorithm incorporates the advantages of by-hand identification (weighing multiple properties) and automated selection (repeatable and consistent). The BCG population chosen by the algorithm is more uniform in its properties than populations selected by other methods, particularly in the relation between absolute magnitude (a proxy for galaxy mass) and average gas temperature (a proxy for cluster mass). This work supported by a Barry M. Goldwater Scholarship and a Sid Jansma Summer Research Fellowship.

  9. Blue emitting undecaplatinum clusters

    Science.gov (United States)

    Chakraborty, Indranath; Bhuin, Radha Gobinda; Bhat, Shridevi; Pradeep, T.

    2014-07-01

    A blue luminescent 11-atom platinum cluster showing step-like optical features and the absence of plasmon absorption was synthesized. The cluster was purified using high performance liquid chromatography (HPLC). Electrospray ionization (ESI) and matrix assisted laser desorption ionization (MALDI) mass spectrometry (MS) suggest a composition, Pt11(BBS)8, which was confirmed by a range of other experimental tools. The cluster is highly stable and compatible with many organic solvents.A blue luminescent 11-atom platinum cluster showing step-like optical features and the absence of plasmon absorption was synthesized. The cluster was purified using high performance liquid chromatography (HPLC). Electrospray ionization (ESI) and matrix assisted laser desorption ionization (MALDI) mass spectrometry (MS) suggest a composition, Pt11(BBS)8, which was confirmed by a range of other experimental tools. The cluster is highly stable and compatible with many organic solvents. Electronic supplementary information (ESI) available: Details of experimental procedures, instrumentation, chromatogram of the crude cluster; SEM/EDAX, DLS, PXRD, TEM, FT-IR, and XPS of the isolated Pt11 cluster; UV/Vis, MALDI MS and SEM/EDAX of isolated 2 and 3; and 195Pt NMR of the K2PtCl6 standard. See DOI: 10.1039/c4nr02778g

  10. Investigation of Cluster and Cluster Queuing System

    OpenAIRE

    Halifu, Saerda

    2008-01-01

    Cluster became main platform as parallel and distributed computing structure for high performance computing. Following the development of high performance computer architecture more and more different branches of natural science benefit fromhuge and efficient computational power. For instance bio-informatics, climate science, computational physics, computational chemistry, marine science, etc. Efficient and reliable computing powermay not only expending demand of existing high performance com...

  11. The Cluster Substructure - Alignment Connection

    CERN Document Server

    Plionis, M

    2002-01-01

    Using the APM cluster data we investigate whether the dynamical status of clusters is related to the large-scale structure of the Universe. We find that cluster substructure is strongly correlated with the tendency of clusters to be aligned with their nearest neighbour and in general with the nearby clusters that belong to the same supercluster. Furthermore, dynamically young clusters are more clustered than the overall cluster population. These are strong indications that cluster develop in a hierarchical fashion by anisotropy merging along the large-scale filamentary superclusters within which they are embedded.

  12. Plant root-microbe communication in shaping root microbiomes.

    Science.gov (United States)

    Lareen, Andrew; Burton, Frances; Schäfer, Patrick

    2016-04-01

    A growing body of research is highlighting the impacts root-associated microbial communities can have on plant health and development. These impacts can include changes in yield quantity and quality, timing of key developmental stages and tolerance of biotic and abiotic stresses. With such a range of effects it is clear that understanding the factors that contribute to a plant-beneficial root microbiome may prove advantageous. Increasing demands for food by a growing human population increases the importance and urgency of understanding how microbiomes may be exploited to increase crop yields and reduce losses caused by disease. In addition, climate change effects may require novel approaches to overcoming abiotic stresses such as drought and salinity as well as new emerging diseases. This review discusses current knowledge on the formation and maintenance of root-associated microbial communities and plant-microbe interactions with a particular emphasis on the effect of microbe-microbe interactions on the shape of microbial communities at the root surface. Further, we discuss the potential for root microbiome modification to benefit agriculture and food production. PMID:26729479

  13. Plant root-microbe communication in shaping root microbiomes.

    Science.gov (United States)

    Lareen, Andrew; Burton, Frances; Schäfer, Patrick

    2016-04-01

    A growing body of research is highlighting the impacts root-associated microbial communities can have on plant health and development. These impacts can include changes in yield quantity and quality, timing of key developmental stages and tolerance of biotic and abiotic stresses. With such a range of effects it is clear that understanding the factors that contribute to a plant-beneficial root microbiome may prove advantageous. Increasing demands for food by a growing human population increases the importance and urgency of understanding how microbiomes may be exploited to increase crop yields and reduce losses caused by disease. In addition, climate change effects may require novel approaches to overcoming abiotic stresses such as drought and salinity as well as new emerging diseases. This review discusses current knowledge on the formation and maintenance of root-associated microbial communities and plant-microbe interactions with a particular emphasis on the effect of microbe-microbe interactions on the shape of microbial communities at the root surface. Further, we discuss the potential for root microbiome modification to benefit agriculture and food production.

  14. Job Oriented Monitoring Clusters

    Directory of Open Access Journals (Sweden)

    Vijayalaxmi Cigala,

    2011-03-01

    Full Text Available There has been a lot of development in the field of clusters and grids. Recently, the use of clusters has been on rise in every possible field. This paper proposes a system that monitors jobs onlarge computational clusters. Monitoring jobs is essential to understand how jobs are being executed. This helps us in understanding the complete life cycle of the jobs being executed on large clusters. Also, this paper describes how the information obtained by monitoring the jobs would help in increasing the overall throughput of clusters. Heuristics help in efficient job distribution among the computational nodes, thereby accomplishing fair job distribution policy. The proposed system would be capable of loadbalancing among the computational nodes, detecting failures, taking corrective actions after failure detection, job monitoring, system resource monitoring, etc.

  15. Pulsars in Globular Clusters

    CERN Document Server

    Camilo, F; Camilo, Fernando; Rasio, Frederic A.

    2005-01-01

    More than 100 radio pulsars have been detected in 24 globular clusters. The largest observed samples are in Terzan 5 and 47 Tucanae, which together contain 45 pulsars. Accurate timing solutions, including positions in the cluster, are known for many of these pulsars. Here we provide an observational overview of some properties of pulsars in globular clusters, as well as properties of the globular clusters with detected pulsars. The many recent detections also provide a new opportunity to re-examine theoretically the formation and evolution of recycled pulsars in globular clusters. Our brief review considers the most important dynamical interaction and binary evolution processes: collisions, exchange interactions, mass transfer, and common-envelope phases.

  16. Mathematical classification and clustering

    CERN Document Server

    Mirkin, Boris

    1996-01-01

    I am very happy to have this opportunity to present the work of Boris Mirkin, a distinguished Russian scholar in the areas of data analysis and decision making methodologies. The monograph is devoted entirely to clustering, a discipline dispersed through many theoretical and application areas, from mathematical statistics and combina­ torial optimization to biology, sociology and organizational structures. It compiles an immense amount of research done to date, including many original Russian de­ velopments never presented to the international community before (for instance, cluster-by-cluster versions of the K-Means method in Chapter 4 or uniform par­ titioning in Chapter 5). The author's approach, approximation clustering, allows him both to systematize a great part of the discipline and to develop many in­ novative methods in the framework of optimization problems. The optimization methods considered are proved to be meaningful in the contexts of data analysis and clustering. The material presented in ...

  17. On TPC cluster reconstruction

    CERN Document Server

    Dydak, F; Nefedov, Y; Wotschack, J; Zhemchugov, A

    2004-01-01

    For a bias-free momentum measurement of TPC tracks, the correct determination of cluster positions is mandatory. We argue in particular that (i) the reconstruction of the entire longitudinal signal shape in view of longitudinal diffusion, electronic pulse shaping, and track inclination is important both for the polar angle reconstruction and for optimum r phi resolution; and that (ii) self-crosstalk of pad signals calls for special measures for the reconstruction of the z coordinate. The problem of 'shadow clusters' is resolved. Algorithms are presented for accepting clusters as 'good' clusters, and for the reconstruction of the r phi and z cluster coordinates, including provisions for 'bad' pads and pads next to sector boundaries, respectively.

  18. Cool Cluster Correctly Correlated

    Energy Technology Data Exchange (ETDEWEB)

    Sergey Aleksandrovich Varganov

    2005-12-17

    Atomic clusters are unique objects, which occupy an intermediate position between atoms and condensed matter systems. For a long time it was thought that physical and chemical properties of atomic dusters monotonically change with increasing size of the cluster from a single atom to a condensed matter system. However, recently it has become clear that many properties of atomic clusters can change drastically with the size of the clusters. Because physical and chemical properties of clusters can be adjusted simply by changing the cluster's size, different applications of atomic clusters were proposed. One example is the catalytic activity of clusters of specific sizes in different chemical reactions. Another example is a potential application of atomic clusters in microelectronics, where their band gaps can be adjusted by simply changing cluster sizes. In recent years significant advances in experimental techniques allow one to synthesize and study atomic clusters of specified sizes. However, the interpretation of the results is often difficult. The theoretical methods are frequently used to help in interpretation of complex experimental data. Most of the theoretical approaches have been based on empirical or semiempirical methods. These methods allow one to study large and small dusters using the same approximations. However, since empirical and semiempirical methods rely on simple models with many parameters, it is often difficult to estimate the quantitative and even qualitative accuracy of the results. On the other hand, because of significant advances in quantum chemical methods and computer capabilities, it is now possible to do high quality ab-initio calculations not only on systems of few atoms but on clusters of practical interest as well. In addition to accurate results for specific clusters, such methods can be used for benchmarking of different empirical and semiempirical approaches. The atomic clusters studied in this work contain from a few atoms

  19. Cluster ion beam evaporation

    International Nuclear Information System (INIS)

    Cluster ions can be made by the supercooling due to adiabatic expansion of substances to be vaporized which are ejected from a nozzle. This paper is described on the recent progress of studies concerning the cluster beam. The technique of cluster ion beam has been applied for the studies of thermonuclear plasma, the fabrication of thin films, crystal growth and electronic devices. The density of cluster ion beam is larger than that of atomic ion beam, and the formation of thin films can be easily done in high vacuum. This method is also useful for epitaxial growth. Metallic vapour cluster beam was made by the help of jetting rare gas beam. Various beam sources were developed. The characteristics of these sources were measured and analyzed. (Kato, T.)

  20. Review on Mutation in Lateral Root of Rice

    Institute of Scientific and Technical Information of China (English)

    ZHANG Xia; ZHANG Da; HAO Zaibin

    2011-01-01

    Rice roots include seminal roots, adventitious roots, lateral roots and root hairs, At present, progresses in the research of rice roots have been achieved in many aspects, such as root morphology, root activity, root reaction to various environmental factors as a contribution of root growth and rice yield, the relationship between root growth and stems/leaves/flowers/rice, genetic laws of root characters, etc. However, there are very few researches on lateral root mutant. This paper reviewed progresses of the lateral root mutant of rice from the perspectives of phytomorphology to plant physiology and biochemistry to the gene mapping, consisting of mechanism of developing lateral root of rice, gene cloning and functional analysis of lateral root development, the relationship between auxin and lateral roots, agronomic traits of lateral roots mutant, structure and morphology of root hairs, gravity anomaly of root, redox metabolism and proteomics researches of the mutation in lateral root of rice.

  1. Root canal filling: fracture strength of fiber-reinforced composite-restored roots and finite element analysis.

    Science.gov (United States)

    Rippe, Marília Pivetta; Santini, Manuela Favarin; Bier, Carlos Alexandre Souza; Borges, Alexandre Luiz Souto; Valandro, Luiz Felipe

    2013-01-01

    The aims of this study were to evaluate the effect of root canal filling techniques on root fracture resistance and to analyze, by finite element analysis (FEA), the expansion of the endodontic sealer in two different root canal techniques. Thirty single-rooted human teeth were instrumented with rotary files to a standardized working length of 14 mm. The specimens were embedded in acrylic resin using plastic cylinders as molds, and allocated into 3 groups (n=10): G(lateral) - lateral condensation; G(single-cone) - single cone; G(tagger) - Tagger's hybrid technique. The root canals were prepared to a length of 11 mm with the #3 preparation bur of a tapered glass fiber-reinforced composite post system. All roots received glass fiber posts, which were adhesively cemented and a composite resin core was built. All groups were subjected to a fracture strength test (1 mm/min, 45°). Data were analyzed statistically by one-way ANOVA with a significance level of 5%. FEA was performed using two models: one simulated lateral condensation and Tagger's hybrid technique, and the other one simulated the single-cone technique. The second model was designed with an amount of gutta-percha two times smaller and a sealer layer two times thicker than the first model. The results were analyzed using von Mises stress criteria. One-way ANOVA indicated that the root canal filling technique affected the fracture strength (p=0.004). The G(lateral) and G(tagger) produced similar fracture strength values, while G(single-cone) showed the lowest values. The FEA showed that the single-cone model generated higher stress in the root canal walls. Sealer thickness seems to influence the fracture strength of restored endodontically treated teeth. PMID:24474359

  2. Root canal filling: fracture strength of fiber-reinforced composite-restored roots and finite element analysis.

    Science.gov (United States)

    Rippe, Marília Pivetta; Santini, Manuela Favarin; Bier, Carlos Alexandre Souza; Borges, Alexandre Luiz Souto; Valandro, Luiz Felipe

    2013-01-01

    The aims of this study were to evaluate the effect of root canal filling techniques on root fracture resistance and to analyze, by finite element analysis (FEA), the expansion of the endodontic sealer in two different root canal techniques. Thirty single-rooted human teeth were instrumented with rotary files to a standardized working length of 14 mm. The specimens were embedded in acrylic resin using plastic cylinders as molds, and allocated into 3 groups (n=10): G(lateral) - lateral condensation; G(single-cone) - single cone; G(tagger) - Tagger's hybrid technique. The root canals were prepared to a length of 11 mm with the #3 preparation bur of a tapered glass fiber-reinforced composite post system. All roots received glass fiber posts, which were adhesively cemented and a composite resin core was built. All groups were subjected to a fracture strength test (1 mm/min, 45°). Data were analyzed statistically by one-way ANOVA with a significance level of 5%. FEA was performed using two models: one simulated lateral condensation and Tagger's hybrid technique, and the other one simulated the single-cone technique. The second model was designed with an amount of gutta-percha two times smaller and a sealer layer two times thicker than the first model. The results were analyzed using von Mises stress criteria. One-way ANOVA indicated that the root canal filling technique affected the fracture strength (p=0.004). The G(lateral) and G(tagger) produced similar fracture strength values, while G(single-cone) showed the lowest values. The FEA showed that the single-cone model generated higher stress in the root canal walls. Sealer thickness seems to influence the fracture strength of restored endodontically treated teeth.

  3. Root Associated Bacteria – Friends or Enemies? A Review

    Directory of Open Access Journals (Sweden)

    Gabriela Mihalache

    2015-10-01

    Full Text Available Plant roots, due to their exudates, represent important ecological niches for bacteria, which can influence the plant growth by their both beneficial and deleterious effects. The positive effects of bacteria interaction with the plants roots consist in facilitating the nutrient uptake (N, P, producing phytohormones, enhancing their resistance to biotic and abiotic factors such as pathogenic fungi and bacteria, extreme temperatures, heavy metals, salinity. Regarding the harmful effects of bacteria on plants growth, production of phytotoxins, competition for nutrients or inducing diseases or even plants death represents examples of mechanisms by which bacteria can affect in a negative manner the growth of the plants.

  4. Grazing and nitrogen on the growth of roots in the mixture of oat and ryegrass

    Directory of Open Access Journals (Sweden)

    Hugo von Linsingen Piazzetta

    2014-09-01

    Full Text Available This study evaluated the effect of grazing and its absence, and the nitrogen on the morphology of roots of black oat (Avena strigosa Schreb. mixed with Italian ryegrass (Lolium multiflorum Lam.. The experimental design was a randomized block design in split-split, the main portion was study the effects of grazing and its absence, in the subplots the nitrogen doses of 75 and 150 kg ha-1 and in the sub-subplots were at sampling period. There was used the cylinder method to collect the root, being measured the length, surface area, mean diameter and volume by image analysis system Win / MacRizho (4.1c. Determined the dry mass of roots and shoot, and estimated the density of the root tissue and shoot:root ratio. From these results we determined the rate of root growth relative (RGR, relative root expansion rate (RRER and rate of accumulation of dry matter daily (RADM. In the first period, was higher RGR, RRER, the second period there was a reduction of the same, probably due to the period of drought and plant senescence. There was also reduced due to grazing RADM. With grazing, the length, surface area, mean diameter and root volume were higher, indicating that there was greater root growth of plants grazed compared to ungrazed. The systems studied had no effect on the dry weight of roots. There were found greater specific mass and shot:root ratio in the system without grazing. There was no significant difference between the nitrogen studied. At mixed of black oat and ryegrass, the grazing and nitrogen dose until 150 kg ha-1 little affect root growth. The nitrogen dose changed a little the growth rates and expansion of the roots. On the other hand, the grazing favored the length, area, volume and root diameter.

  5. Effect of root distribution on modelling percolation and groundwater evapotranspiration

    Science.gov (United States)

    Orellana, F. A.; Daly, E.

    2011-12-01

    when the roots are positioned far from the water table. These results reflect the importance of considering the root distribution of vegetation for the evaluation of the water balance. This is especially important for groundwater-dependent ecosystems, where it has been shown that many species develop a dimorphic root system in order to obtain water from deeper and wetter layers of the soil. In these systems, the estimation of percolation and groundwater evapotranspiration might be significantly affected by different mathematical descriptions of root distribution of the vegetation. A correct estimation of both recharge and groundwater used by vegetation is highly important for a sustainable management of groundwater-dependent ecosystems.

  6. Expressed sequence tag analysis of functional genes associated with adventitious rooting in Liriodendron hybrids.

    Science.gov (United States)

    Zhong, Y D; Sun, X Y; Liu, E Y; Li, Y Q; Gao, Z; Yu, F X

    2016-06-24

    Liriodendron hybrids (Liriodendron chinense x L. tulipifera) are important landscaping and afforestation hardwood trees. To date, little genomic research on adventitious rooting has been reported in these hybrids, as well as in the genus Liriodendron. In the present study, we used adventitious roots to construct the first cDNA library for Liriodendron hybrids. A total of 5176 expressed sequence tags (ESTs) were generated and clustered into 2921 unigenes. Among these unigenes, 2547 had significant homology to the non-redundant protein database representing a wide variety of putative functions. Homologs of these genes regulated many aspects of adventitious rooting, including those for auxin signal transduction and root hair development. Results of quantitative real-time polymerase chain reaction showed that AUX1, IRE, and FB1 were highly expressed in adventitious roots and the expression of AUX1, ARF1, NAC1, RHD1, and IRE increased during the development of adventitious roots. Additionally, 181 simple sequence repeats were identified from 166 ESTs and more than 91.16% of these were dinucleotide and trinucleotide repeats. To the best of our knowledge, the present study reports the identification of the genes associated with adventitious rooting in the genus Liriodendron for the first time and provides a valuable resource for future genomic studies. Expression analysis of selected genes could allow us to identify regulatory genes that may be essential for adventitious rooting.

  7. Inhibition of growth and development of root border cells in wheat by Al.

    Science.gov (United States)

    Zhu, Mu-Yuan; Ahn, Sung-Ju; Matsumoto, Hideaki

    2003-03-01

    The production and development of border cells vary with genotype, and they are released in wheat at an earlier stage of root development than other species studied so far. No significant difference was observed in the maximum number of border cells between Al-tolerant (Atlas 66) and Al-sensitive (Scout 66) cultivars in the absence of Al treatment. Al seriously inhibited the production and release of border cells, resulting in clumping of border cells in Scout 66, but less clustering in Atlas 66. The number of border cells released from roots treated with Al is significantly less than that from roots grown without Al treatment. Al treatment induced the death of detached border cells in vitro and they were killed by a 20-h treatment with 25 micro m Al. No significant difference in survival percentage of detached border cells was observed between Atlas 66 and Scout 66, regardless of the presence or absence of Al. The removal of border cells from root tips of both Atlas 66 and Scout 66 enhanced the Al-induced inhibition of root elongation concomitant with increased Al accumulation in the root. These results suggest that border cells adhered to the root tips play a potential role in the protection of root from Al injury in wheat.

  8. Descendant root volume varies as a function of root type: estimation of root biomass lost during uprooting in Pinus pinaster

    OpenAIRE

    Danjon, Frédéric; Caplan, Joshua S.; Fortin, Mathieu; Meredieu, Céline

    2013-01-01

    Root systems of woody plants generally display a strong relationship between the cross-sectional area or cross-sectional diameter (CSD) of a root and the dry weight of biomass (DWd) or root volume (Vd) that has grown (i.e., is descendent) from a point. Specification of this relationship allows one to quantify root architectural patterns and estimate the amount of material lost when root systems are extracted from the soil. However, specifications of this relationship generally do not account ...

  9. Simulating Star Clusters with the AMUSE Software Framework: I. Dependence of Cluster Lifetimes on Model Assumptions and Cluster Dissolution Modes

    CERN Document Server

    Whitehead, Alfred J; Vesperini, Enrico; Zwart, Simon Portegies

    2013-01-01

    We perform a series of simulations of evolving star clusters using AMUSE (the Astrophysical Multipurpose Software Environment), a new community-based multi-physics simulation package, and compare our results to existing work. These simulations model a star cluster beginning with a King model distribution and a selection of power-law initial mass functions, and contain a tidal cut-off. They are evolved using collisional stellar dynamics and include mass loss due to stellar evolution. After determining that the differences between AMUSE results and prior publications are understood, we explored the variation in cluster lifetimes due to the random realization noise introduced by transforming a King model to specific initial conditions. This random realization noise can affect the lifetime of a simulated star cluster by up to 30%. Two modes of star cluster dissolution were identified: a mass evolution curve that contains a run-away cluster dissolution with a sudden loss of mass, and a dissolution mode that does n...

  10. Molecular diversity and distribution of indigenous arbuscular mycorrhizal communities colonizing roots of two different winter cover crops in response to their root proliferation.

    Science.gov (United States)

    Higo, Masao; Isobe, Katsunori; Miyazawa, Yusuke; Matsuda, Yukiya; Drijber, Rhae A; Torigoe, Yoichi

    2016-02-01

    A clear understanding of how crop root proliferation affects the distribution of the spore abundance of arbuscular mycorrhizal fungi (AMF) and the composition of AMF communities in agricultural fields is imperative to identify the potential roles of AMF in winter cover crop rotational systems. Toward this goal, we conducted a field trial using wheat (Triticum aestivum L.) or red clover (Trifolium pratense L.) grown during the winter season. We conducted a molecular analysis to compare the diversity and distribution of AMF communities in roots and spore abundance in soil cropped with wheat and red clover. The AMF spore abundance, AMF root colonization, and abundance of root length were investigated at three different distances from winter crops (0 cm, 7.5 cm, and 15 cm), and differences in these variables were found between the two crops. The distribution of specific AMF communities and variables responded to the two winter cover crops. The majority of Glomerales phylotypes were common to the roots of both winter cover crops, but Gigaspora phylotypes in Gigasporales were found only in red clover roots. These results also demonstrated that the diversity of the AMF colonizing the roots did not significantly change with the three distances from the crop within each rotation but was strongly influenced by the host crop identity. The distribution of specific AMF phylotypes responded to the presence of wheat and red clover roots, indicating that the host crop identity was much more important than the proliferation of crop roots in determining the diversity of the AMF communities.

  11. Molecular diversity and distribution of indigenous arbuscular mycorrhizal communities colonizing roots of two different winter cover crops in response to their root proliferation.

    Science.gov (United States)

    Higo, Masao; Isobe, Katsunori; Miyazawa, Yusuke; Matsuda, Yukiya; Drijber, Rhae A; Torigoe, Yoichi

    2016-02-01

    A clear understanding of how crop root proliferation affects the distribution of the spore abundance of arbuscular mycorrhizal fungi (AMF) and the composition of AMF communities in agricultural fields is imperative to identify the potential roles of AMF in winter cover crop rotational systems. Toward this goal, we conducted a field trial using wheat (Triticum aestivum L.) or red clover (Trifolium pratense L.) grown during the winter season. We conducted a molecular analysis to compare the diversity and distribution of AMF communities in roots and spore abundance in soil cropped with wheat and red clover. The AMF spore abundance, AMF root colonization, and abundance of root length were investigated at three different distances from winter crops (0 cm, 7.5 cm, and 15 cm), and differences in these variables were found between the two crops. The distribution of specific AMF communities and variables responded to the two winter cover crops. The majority of Glomerales phylotypes were common to the roots of both winter cover crops, but Gigaspora phylotypes in Gigasporales were found only in red clover roots. These results also demonstrated that the diversity of the AMF colonizing the roots did not significantly change with the three distances from the crop within each rotation but was strongly influenced by the host crop identity. The distribution of specific AMF phylotypes responded to the presence of wheat and red clover roots, indicating that the host crop identity was much more important than the proliferation of crop roots in determining the diversity of the AMF communities. PMID:26832664

  12. Hormonal response and root architecture in Arabidopsis thaliana subjected to heavy metals

    Directory of Open Access Journals (Sweden)

    Antonella Vitti

    2014-05-01

    Full Text Available In this work, specific concentrations of cadmium, copper and zinc in double combination, were supplied for 12 days to growing seedlings of the model species Arabidopsis thaliana. Metal accumulation was measured in roots and shoots. Microscopic analyses revealed that root morphology was affected by metals, and that the root and shoot levels of indole-3-acetic acid, trans-zeatin riboside and dihydrozeatin riboside varied accordingly. Minor modifications in gibberellic acid levels occurred in the Zinc treatments, whereas abscisic acid level did not change after the exposition to metals. Reverse transcription polymerase chain reaction analysis of some genes involved in auxin and cytokinin synthesis (AtAAO, AtNIT and AtIPT revealed that their expression were not affected by metal treatments. The root morphological alterations that resulted in an increased surface area, due to the formation of root hairs and lateral roots, could be signs of the response to metal stress in terms of a functionally-addressed reorientation of root growth. The root system plasticity observed could be important for better understanding the manner in which the root architecture is shaped by environmental and hormonal stimuli.

  13. How Can Science Education Foster Students' Rooting?

    Science.gov (United States)

    Østergaard, Edvin

    2015-01-01

    The question of how to foster rooting in science education points towards a double challenge; efforts to "prevent" (further) uprooting and efforts to "promote" rooting/re-rooting. Wolff-Michael Roth's paper discusses the uprooting/rooting pair of concepts, students' feeling of alienation and loss of fundamental sense of the…

  14. Effects of different irrigation methods on micro-environments and root distribution in winter wheat ifelds

    Institute of Scientific and Technical Information of China (English)

    L Guo-hua; SONG Ji-qing; BAI Wen-bo; WU Yong-feng; LIU Yuan; KANG Yao-hu

    2015-01-01

    The irrigation method used in winter wheat ifelds affects micro-environment factors, such as relative humidity (RH) within canopy, soil temperature, topsoil bulk density, soil matric potential, and soil nutrients, and these changes may affect plant root growth. An experiment was carried out to explore the effects of irrigation method on micro-environments and root distribution in a winter wheat ifeld in the 2007–2008 and 2008–2009 growing seasons. The results showed that border irrigation (BI), sprinkler irrigation (SI), and surface drip irrigation (SDI) had no signiifcant effects on soil temperature. Topsoil bulk density, RH within the canopy, soil available N distribution, and soil matric potential were signiifcantly affected by the three treatments. The change in soil matric potential was the key reason for the altered root proifle distribution patterns. Additional y, more ifne roots were produced in the BI treatment when soil water content was low and topsoil bulk density was high. Root growth was most stimulated in the top soil layers and inhibited in the deep layers in the SDI treatment, fol owed by SI and BI, which was due to the different water application frequencies. As a result, the root proifle distribution differed, depending on the irrigation method used. The root distribution pattern changes could be described by the power level variation in the exponential function. A good knowledge of root distribution patterns is important when attempting to model water and nutrient movements and when studying soil-plant interactions.

  15. Dosage effect of the short arm of chromosome 1 of rye on root morphology and anatomy in bread wheat

    OpenAIRE

    Sharma, Sundrish; DeMason, Darleen A.; Ehdaie, Bahman; Lukaszewski, Adam J.; Waines, J. Giles

    2010-01-01

    The spontaneous translocation of the short arm of chromosome 1 of rye (1RS) in bread wheat is associated with higher root biomass and grain yield. Recent studies have confirmed the presence of QTL for different root morphological traits on the 1RS arm in bread wheat. This study was conducted to address two questions in wheat root genetics. First, does the presence of the 1RS arm in bread wheat affect its root anatomy? Second, how does root morphology and anatomy of bread wheat respond to diff...

  16. Evolution of orthologous tandemly arrayed gene clusters

    Directory of Open Access Journals (Sweden)

    Bertrand Denis

    2011-10-01

    Full Text Available Abstract Background Tandemly Arrayed Gene (TAG clusters are groups of paralogous genes that are found adjacent on a chromosome. TAGs represent an important repertoire of genes in eukaryotes. In addition to tandem duplication events, TAG clusters are affected during their evolution by other mechanisms, such as inversion and deletion events, that affect the order and orientation of genes. The DILTAG algorithm developed in 1 makes it possible to infer a set of optimal evolutionary histories explaining the evolution of a single TAG cluster, from an ancestral single gene, through tandem duplications (simple or multiple, direct or inverted, deletions and inversion events. Results We present a general methodology, which is an extension of DILTAG, for the study of the evolutionary history of a set of orthologous TAG clusters in multiple species. In addition to the speciation events reflected by the phylogenetic tree of the considered species, the evolutionary events that are taken into account are simple or multiple tandem duplications, direct or inverted, simple or multiple deletions, and inversions. We analysed the performance of our algorithm on simulated data sets and we applied it to the protocadherin gene clusters of human, chimpanzee, mouse and rat. Conclusions Our results obtained on simulated data sets showed a good performance in inferring the total number and size distribution of duplication events. A limitation of the algorithm is however in dealing with multiple gene deletions, as the algorithm is highly exponential in this case, and becomes quickly intractable.

  17. A hybrid distance measure for clustering expressed sequence tags originating from the same gene family.

    Directory of Open Access Journals (Sweden)

    Keng-Hoong Ng

    Full Text Available BACKGROUND: Clustering is a key step in the processing of Expressed Sequence Tags (ESTs. The primary goal of clustering is to put ESTs from the same transcript of a single gene into a unique cluster. Recent EST clustering algorithms mostly adopt the alignment-free distance measures, where they tend to yield acceptable clustering accuracies with reasonable computational time. Despite the fact that these clustering methods work satisfactorily on a majority of the EST datasets, they have a common weakness. They are prone to deliver unsatisfactory clustering results when dealing with ESTs from the genes derived from the same family. The root cause is the distance measures applied on them are not sensitive enough to separate these closely related genes. METHODOLOGY/PRINCIPAL FINDINGS: We propose a hybrid distance measure that combines the global and local features extracted from ESTs, with the aim to address the clustering problem faced by ESTs derived from the same gene family. The clustering process is implemented using the DBSCAN algorithm. We test the hybrid distance measure on the ten EST datasets, and the clustering results are compared with the two alignment-free EST clustering tools, i.e. wcd and PEACE. The clustering results indicate that the proposed hybrid distance measure performs relatively better (in terms of clustering accuracy than both EST clustering tools. CONCLUSIONS/SIGNIFICANCE: The clustering results provide support for the effectiveness of the proposed hybrid distance measure in solving the clustering problem for ESTs that originate from the same gene family. The improvement of clustering accuracies on the experimental datasets has supported the claim that the sensitivity of the hybrid distance measure is sufficient to solve the clustering problem.

  18. Comparison of the Root End Sealing Ability of Four Different Retrograde Filling Materials in Teeth with Root Apices Resected at Different Angles – An Invitro Study

    Science.gov (United States)

    Ponnappa, K.C.; Yadav, Pankaj; Rao, Yogesh; Relhan, Nikhil; Gupta, Priyanka; Choubey, Ashish; Bhardwaj, Shivanshu

    2016-01-01

    Introduction Insufficient apical seal is the significant reason for surgical endodontic disappointment. The root-end filling material utilized should avoid egress of potential contaminants into periapical tissue. Aim The aim of this study was to compare the sealing ability of four root-end filling materials MTA, Portland cement, IRM, RMGIC in teeth with root apices resected at 0 and 45 angle using dye penetration method under fluorescent microscope. Materials and Methods Hundred extracted human maxillary anterior teeth were sectioned horizontally at the cement-enamel junction. After cleaning, shaping and obturation with gutta-percha and AH Plus sealer, the tooth samples were randomly divided in two groups (the root apices resected at 0° and 45° to the long axis of the root). The root resections were carried out by removing 2 mm and 1 mm in both the groups. Following which 3 mm deep root-end cavities were prepared at the apices and the root were coated with nail varnish except the tip. The teeth in both the group were randomly divided into four subgroups each (Pro root MTA, Portland cement, IRM and Light cure nano GIC Ketac N-100). All the retrofilled samples were stored in acrydine orange for 24 hours after which they were cleaned and vertically sectioned buccolingually. The sectioned root samples were observed under fluorescent microscope. Results The root apex sealing ability of Mineral Trioxide Aggregate (MTA) was superior to Portland cement, Intermediate Restorative Material (IRM) and LC GIC. IRM demonstrated the maximum apical leakage value among all the materials. Portland cement and LC GIC showed comparable sealing ability. Conclusion The angulation whether 0° or 45° angle did not affect the sealing ability of all the four materials used, MTA proved to be one of the superior materials for root-end filling. PMID:26894168

  19. How does real affect affect affect recognition in speech?

    NARCIS (Netherlands)

    Truong, Khiet Phuong

    2009-01-01

    The aim of the research described in this thesis was to develop speech-based affect recognition systems that can deal with spontaneous (‘real’) affect instead of acted affect. Several affect recognition experiments with spontaneous affective speech data were carried out to investigate what combinati

  20. Root Characteristics of Perennial Warm-Season Grasslands Managed for Grazing and Biomass Production

    Directory of Open Access Journals (Sweden)

    Rattan Lal

    2013-07-01

    Full Text Available Minirhizotrons were used to study root growth characteristics in recently established fields dominated by perennial C4-grasses that were managed either for cattle grazing or biomass production for bioenergy in Virginia, USA. Measurements over a 13-month period showed that grazing resulted in smaller total root volumes and root diameters. Under biomass management, root volume was 40% higher (49 vs. 35 mm3 and diameters were 20% larger (0.29 vs. 0.24 mm compared to grazing. While total root length did not differ between grazed and biomass treatments, root distribution was shallower under grazed areas, with 50% of total root length in the top 7 cm of soil, compared to 41% in ungrazed exclosures. These changes (i.e., longer roots and greater root volume in the top 10 cm of soil under grazing but the reverse at 17–28 cm soil depths were likely caused by a shift in plant species composition as grazing reduced C4 grass biomass and allowed invasion of annual unsown species. The data suggest that management of perennial C4 grasslands for either grazing or biomass production can affect root growth in different ways and this, in turn, may have implications for the subsequent carbon sequestration potential of these grasslands.