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Sample records for aerobic microbial degradation

  1. Aerobic Microbial Degradation of Chlorochromate Compounds Polluting the Environment

    International Nuclear Information System (INIS)

    Eight soil and sludge samples which have been polluted with petroleum wastes for more than 41 years were used for isolation of adapted indigenous microbial communities able to mineralize the chloro aromatic compounds [3-chlorobenzoic acid (3-CBA), 2,4-dichlorophenol (2,4-DCP), 2,6-dichlorophenol indole phenol (2,6-DCPP) and 1,2,4-trichlorobenzene (1,2,4-TCB)] and use them as a sole carbon and energy sources. From these communities, the most promising bacterial strain MAM-24 which has the ability to degrade the four chosen aromatic compounds was isolated and identified by comparative sequence analysis for its 16S-rRNA coding genes and it was identified as Bacillus mucilaginosus HQ 013329. Degradation percentage was quantified by HPLC. Degradation products were identified by GC-MS analysis which revealed that the isolated strain and its mutant dechlorinated the four chloro aromatic compounds in the first step forming acetophenone which is considered as the corner stone of the intermediate compounds

  2. Aerobic and anaerobic microbial degradation of crude (4-methylcyclohexyl)methanol in river sediments.

    Science.gov (United States)

    Yuan, Li; Zhi, Wei; Liu, Yangsheng; Smiley, Elizabeth; Gallagher, Daniel; Chen, Xi; Dietrich, Andrea; Zhang, Husen

    2016-03-15

    Cyclohexane and some of its derivatives have been a major concern because of their significant adverse human health effects and widespread occurrence in the environment. The 2014 West Virginia chemical spill has raised public attention to (4-methylcyclohexyl)methanol (4-MCHM), one cyclohexane derivative, which is widely used in coal processing but largely ignored. In particular, the environmental fate of its primary components, cis- and trans-4-MCHM, remains largely unexplored. This study aimed to investigate the degradation kinetics and mineralization of cis- and trans-4-MCHM by sediment microorganisms under aerobic and anaerobic conditions. We found the removal of cis- and trans-4-MCHM was mainly attributed to biodegradation with little contribution from sorption. A nearly complete aerobic degradation of 4-MCHM occurred within 14 days, whereas the anaerobic degradation was reluctant with residual percentages of 62.6% of cis-4-MCHM and 85.0% of trans-4-MCHM after 16-day incubation. The cis-4-MCHM was degraded faster than the trans under both aerobic and anaerobic conditions, indicating an isomer-specific degradation could occur during the 4-MCHM degradation. Nitrate addition enhanced 4-MCHM mineralization by about 50% under both aerobic and anaerobic conditions. Both cis- and trans-4-MCHM fit well with the first-order kinetic model with respective degradation rates of 0.46-0.52 and 0.19-0.31 day(-)(1) under aerobic condition. Respective degradation rates of 0.041-0.095 and 0.013-0.052 day(-)(1) occurred under anaerobic condition. One bacterial strain capable of effectively degrading 4-MCHM isomers was isolated from river sediments and identified as Bacillus pumilus at the species level based on 16S rRNA gene sequence and 97% identity. Our findings will provide critical information for improving the prediction of the environmental fate of 4-MCHM and other cyclohexane derivatives with similar structure as well as enhancing the development of feasible treatment

  3. Stable carbon and hydrogen isotopic fractionations of alkane compounds and crude oil during aerobically microbial degradation

    Institute of Scientific and Technical Information of China (English)

    PENG Xianzhi; ZHANG Gan; CHEN Fanzhong; LIU Guoqing

    2004-01-01

    Normal alkane compounds dodecane, pentadecane, hexadecane, octadecane, tetracosane, isoprenoid alkane pristane and a crude oil sample were aerobically biodegraded with a pure bacterial strain GIM2.5 and white rot fungus Phanerochaete Chrysosporium-1767 to monitor the kinetic fractionation of the molecular stable carbon (δ13C) and hydrogen (δD) isotopes in the course of biodegradation. Both δ13C (V-PDB) and δ D (V-SMOW) remained stable for the standard alkane compounds and n-alkane components (from n-C13 to n-C25) of the crude oil, generally varying in the range of ±0.5‰ and ±5‰ respectively, within the range of the instrumental precisions, especially for those molecularly heavier than n-C16 during microbial degradation. These results indicate that molecular stable carbon and hydrogen isotopic fingerprints can be promising indicators for tracing the sources of petroleum-related contaminants in the environment, especially in the case of severe weathering when they are difficult to be unambiguously identified by the chemical fingerprints alone.

  4. Effects of gene-augmentation on the formation, characteristics and microbial community of 2,4-dichlorophenoxyacetic acid degrading aerobic microbial granules

    International Nuclear Information System (INIS)

    Highlights: ► The first study to cultivate aerobic granules capable of utilizing 2,4-D as the sole carbon source. ► Granules cultivated through gene-augmentation were first compared systematically with the control on granule formation, degradation kinetics, morphology, and microbial community. ► The first report on the fate of transconjugats in the granules during long term operation after bioaugmentation. ► The first study to isolate in dominant bacteria in 2,4-D degrading microbial granules. - Abstract: Development of 2,4-dichlorophenoxyacetic acid (2,4-D) degrading aerobic granular sludge was conducted in two sequencing batch reactors (SBR) with one bioaugmented with a plasmid pJP4 donor strain Pseudomonas putida SM1443 and the other as a control. Half-matured aerobic granules pre-grown on glucose were used as the starting seeds and a two-stage operation strategy was applied. Granules capable of utilizing 2,4-D (about 500 mg/L) as the sole carbon source was successfully cultivated in both reactors. Gene-augmentation resulted in the enhancement of 2,4-D degradation rates by the percentage of 65–135% for the granules on Day 18, and 6–24% for the granules on Day 105. Transconjugants receiving plasmid pJP4 were established in the granule microbial community after bioaugmentation and persisted till the end of operation. Compared with the control granules, the granules in the bioaugmented reactor demonstrated a better settling ability, larger size, more abundant microbial diversity and stronger tolerance to 2,4-D. The finally obtained granules in the bioaugmented and control reactor had a granule size of around 600 μm and 500 μm, a Shannon–Weaver diversity index (H) of 0.96 and 0.55, respectively. A shift in microbial community was found during the granulation process.

  5. Interaction of Polybrominated Diphenyl Ethers and Aerobic Granular Sludge: Biosorption and Microbial Degradation

    OpenAIRE

    Shou-Qing Ni; Qingjie Cui; Zhen Zheng

    2014-01-01

    As a new category of persistent organic pollutants, polybrominated diphenyl ethers (PBDEs) have become ubiquitous global environmental contaminants. No literature is available on the aerobic biotransformation of decabromodiphenyl ether (BDE-209). Herein, we investigated the interaction of PBDEs with aerobic granular sludge. The results show that the removal of BDE-209 from wastewater is mainly via biosorption onto aerobic granular sludge. The uptake capacity increased when temperature, contac...

  6. Effect of exposure history on microbial herbicide degradation in an aerobic aquifer affected by a point source

    DEFF Research Database (Denmark)

    Tuxen, Nina; de Lipthay, J.R.; Albrechtsen, Hans-Jørgen;

    2002-01-01

    The effects of in situ exposure to low concentrations (micrograms per liter) of herbicides on aerobic degradation of herbicides in aquifers were studied by laboratory batch experiments. Aquifer material and groundwater were collected from a point source with known exposure histories to the herbic...

  7. Microbial Degradation of Indole and Its Derivatives

    Directory of Open Access Journals (Sweden)

    Pankaj Kumar Arora

    2015-01-01

    Full Text Available Indole and its derivatives, including 3-methylindole and 4-chloroindole, are environmental pollutants that are present worldwide. Microbial degradation of indole and its derivatives can occur in several aerobic and anaerobic pathways; these pathways involve different known and characterized genes. In this minireview, we summarize and explain the microbial degradation of indole, indole-3-acetic acid, 4-chloroindole, and methylindole.

  8. Aerobic microbial enhanced oil recovery

    Energy Technology Data Exchange (ETDEWEB)

    Torsvik, T. [Univ. of Bergen (Norway); Gilje, E.; Sunde, E.

    1995-12-31

    In aerobic MEOR, the ability of oil-degrading bacteria to mobilize oil is used to increase oil recovery. In this process, oxygen and mineral nutrients are injected into the oil reservoir in order to stimulate growth of aerobic oil-degrading bacteria in the reservoir. Experiments carried out in a model sandstone with stock tank oil and bacteria isolated from offshore wells showed that residual oil saturation was lowered from 27% to 3%. The process was time dependent, not pore volume dependent. During MEOR flooding, the relative permeability of water was lowered. Oxygen and active bacteria were needed for the process to take place. Maximum efficiency was reached at low oxygen concentrations, approximately 1 mg O{sub 2}/liter.

  9. Investigations in the microbial degradation of polychlorinated dibenzo-p-dioxins and means of reductive dechlorination and aerobic mineralization

    International Nuclear Information System (INIS)

    The work had the objective to develop a biological method for cleaning up PCDD/PCDF contaminated upper soil layers (PCDDs/PCDFs: polychlorinated dibenzo-p-dioxins and dibenzofurans). Since highly chlorinated aromatic compounds persist in soil under aerobic conditions, reductive dechlorination of the compounds under anaerobic conditions was aimed at in a first phase of the project. A second, topped phase was destined for aerobic mineralization of the dechlorinated matrices. The tests were carried out on three farmland soils following long-term contamination with PCDDs/PCDFs. (orig./MG)

  10. Enhanced selection of micro-aerobic pentachlorophenol degrading granular sludge

    International Nuclear Information System (INIS)

    Graphical abstract: In this work, an aerobic column reactor was placed before the USB to maintain micro-oxygen condition in the reactor and the micro-aerobic pentachlorophenol (PCP) degrading granular sludge under oxygen-limited conditions (0.1–0.2 mg L−1) was successfully obtained. PCP degradation by the micro-aerobic system was studied and the variance of microbial community was also discussed by using PCR-DGGE analysis. - Highlights: • Micro-aerobic granular sludge was cultivated in column-type combined reactors. • PCP biodegradation, VFA accumulation and biogas production were studied. • The function of Methanogenic archaeon in the system was investigated. • Fluctuation and diversity of microbial community were discussed by DGGE analysis. • The dominated microorganisms were identified by 16S rDNA sequences. - Abstract: Column-type combined reactors were designed to cultivate micro-aerobic pentachlorophenol (PCP) degrading granular sludge under oxygen-limited conditions (0.1–0.2 mg L−1) over 39-day experimental period. Micro-aerobic granular had both anaerobic activity (SMA: 2.34 mMCH4/h g VSS) and aerobic activity (SOUR: 2.21 mMO2/h g VSS). Metabolite analysis results revealed that PCP was sequentially dechlorinated to TCP, DCP, and eventually to MCP. Methanogens were not directly involved in the dechlorination of PCP, but might played a vital role in stabilizing the overall structure of the granule sludge. For Eubacteria, the Shannon Index (2.09 in inoculated granular sludge) increased both in micro-aerobic granular sludge (2.61) and PCP-degradation granular sludge (2.55). However, for Archaea, it decreased from 2.53 to 1.85 and 1.84, respectively. Although the Shannon Index demonstrated slight difference between micro-aerobic granular sludge and PCP-degradation granular sludge, the Principal Component Analysis (PCA) indicated obvious variance of the microbial composition, revealing significant effect of micro-aerobic condition and PCP on

  11. Enhanced selection of micro-aerobic pentachlorophenol degrading granular sludge

    Energy Technology Data Exchange (ETDEWEB)

    Lv, Yuancai, E-mail: donkey1204@hotmail.com [State Key Laboratory of Pulp and Paper Engineering, College of Light Industry and Food Science, South China University of Technology, Guangzhou 510640 (China); Chen, Yuancai, E-mail: chenyc@scut.edu.cn [State Key Laboratory of Pulp and Paper Engineering, College of Light Industry and Food Science, South China University of Technology, Guangzhou 510640 (China); Ministry of Education Key Laboratory of Pollution Control and Ecological Remediation for Industrial Agglomeration Area, College of Environment and Energy, South China University of Technology, Guangzhou 510006 (China); Song, Wenzhe, E-mail: songwenzhe007@126.com [Ministry of Education Key Laboratory of Pollution Control and Ecological Remediation for Industrial Agglomeration Area, College of Environment and Energy, South China University of Technology, Guangzhou 510006 (China); Hu, Yongyou, E-mail: ppyyhu@scut.edu.cn [State Key Laboratory of Pulp and Paper Engineering, College of Light Industry and Food Science, South China University of Technology, Guangzhou 510640 (China); Ministry of Education Key Laboratory of Pollution Control and Ecological Remediation for Industrial Agglomeration Area, College of Environment and Energy, South China University of Technology, Guangzhou 510006 (China)

    2014-09-15

    Graphical abstract: In this work, an aerobic column reactor was placed before the USB to maintain micro-oxygen condition in the reactor and the micro-aerobic pentachlorophenol (PCP) degrading granular sludge under oxygen-limited conditions (0.1–0.2 mg L{sup −1}) was successfully obtained. PCP degradation by the micro-aerobic system was studied and the variance of microbial community was also discussed by using PCR-DGGE analysis. - Highlights: • Micro-aerobic granular sludge was cultivated in column-type combined reactors. • PCP biodegradation, VFA accumulation and biogas production were studied. • The function of Methanogenic archaeon in the system was investigated. • Fluctuation and diversity of microbial community were discussed by DGGE analysis. • The dominated microorganisms were identified by 16S rDNA sequences. - Abstract: Column-type combined reactors were designed to cultivate micro-aerobic pentachlorophenol (PCP) degrading granular sludge under oxygen-limited conditions (0.1–0.2 mg L{sup −1}) over 39-day experimental period. Micro-aerobic granular had both anaerobic activity (SMA: 2.34 mMCH{sub 4}/h g VSS) and aerobic activity (SOUR: 2.21 mMO{sub 2}/h g VSS). Metabolite analysis results revealed that PCP was sequentially dechlorinated to TCP, DCP, and eventually to MCP. Methanogens were not directly involved in the dechlorination of PCP, but might played a vital role in stabilizing the overall structure of the granule sludge. For Eubacteria, the Shannon Index (2.09 in inoculated granular sludge) increased both in micro-aerobic granular sludge (2.61) and PCP-degradation granular sludge (2.55). However, for Archaea, it decreased from 2.53 to 1.85 and 1.84, respectively. Although the Shannon Index demonstrated slight difference between micro-aerobic granular sludge and PCP-degradation granular sludge, the Principal Component Analysis (PCA) indicated obvious variance of the microbial composition, revealing significant effect of micro-aerobic

  12. Degradation of microbial polyesters.

    Science.gov (United States)

    Tokiwa, Yutaka; Calabia, Buenaventurada P

    2004-08-01

    Microbial polyhydroxyalkanoates (PHAs), one of the largest groups of thermoplastic polyesters are receiving much attention as biodegradable substitutes for non-degradable plastics. Poly(D-3-hydroxybutyrate) (PHB) is the most ubiquitous and most intensively studied PHA. Microorganisms degrading these polyesters are widely distributed in various environments. Although various PHB-degrading microorganisms and PHB depolymerases have been studied and characterized, there are still many groups of microorganisms and enzymes with varying properties awaiting various applications. Distributions of PHB-degrading microorganisms, factors affecting the biodegradability of PHB, and microbial and enzymatic degradation of PHB are discussed in this review. We also propose an application of a new isolated, thermophilic PHB-degrading microorganism, Streptomyces strain MG, for producing pure monomers of PHA and useful chemicals, including D-3-hydroxycarboxylic acids such as D-3-hydroxybutyric acid, by enzymatic degradation of PHB. PMID:15289671

  13. Microbial aerobic and anaerobic degradation of acrylamide in sludge and water under environmental conditions--case study in a sand and gravel quarry.

    Science.gov (United States)

    Guezennec, A G; Michel, C; Ozturk, S; Togola, A; Guzzo, J; Desroche, N

    2015-05-01

    Polyacrylamides (PAMs) are used in sand and gravel quarries as water purification flocculants for recycling process water in a recycling loop system where the flocculants remove fine particles in the form of sludge. The PAM-based flocculants, however, contain residual amounts of acrylamide (AMD) that did not react during the polymerization process. This acrylamide is released into the environment when the sludge is discharged into a settling basin. Here, we explore the microbial diversity and the potential for AMD biodegradation in water and sludge samples collected in a quarry site submitted to low AMD concentrations. The microbial diversity, analyzed by culture-dependent methods and the denaturing gradient gel electrophoresis approach, reveals the presence of Proteobacteria, Cyanobacteria, and Actinobacteria, among which some species are known to have an AMD biodegradation activity. Results also show that the two main parts of the water recycling loop-the washing process and the settling basin-display significantly different bacterial profiles. The exposure time with residual AMD could, thus, be one of the parameters that lead to a selection of specific bacterial species. AMD degradation experiments with 0.5 g L(-1) AMD showed a high potential for biodegradation in all parts of the washing process, except the make-up water. The AMD biodegradation potential in samples collected from the washing process and settling basin was also analyzed taking into account on-site conditions: low (12 °C) and high (25 °C) temperatures reflecting the winter and summer seasons, and AMD concentrations of 50 μg L(-1). Batch tests showed rapid (as little as 18 h) AMD biodegradation under aerobic and anaerobic conditions at both the winter and summer temperatures, although there was a greater lag time before activity started with the AMD biodegradation at 12 °C. This study, thus, demonstrates that bacteria present in sludge and water samples exert an in situ and rapid

  14. DETECTION OF A MICROBIAL CONSORTIUM, INCLUDING TYPE 2 METHANOTROPHS, BY USE OF PHOSPHOLIPID FATTY ACIDES IN AN AEROBIC HALOGENATED HYDROCARBON-DEGRADING SOIL COLUMN ENRICHED WITH NATURAL GAS

    Science.gov (United States)

    The phospholipid ester-linked normal and lipopolysaccharide layer hydroxy fatty acids from microbes in a natural gas (85% methane)-stimulated soil column capable of degrading halogenated hydrocarbons were analyzed in detail by capillary column GC-MS. Microbial biomass, calculated...

  15. Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones

    DEFF Research Database (Denmark)

    Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene Mark;

    2015-01-01

    Namibia and Peru. Experiments with additions of double-labelled oxygen revealed high aerobic activity in the upper OMZs, likely controlled by surface organic matter export. Consistently observed oxygen consumption in samples retrieved throughout the lower OMZs hints at efficient exploitation of vertically...... denitrification and alternative anaerobic pathways of organic matter remineralization cannot account for the ammonium requirements of reported anammox rates. Here, we explore the significance of microaerobic respiration as a source of ammonium during organic matter degradation in the oxygen-deficient waters off...... and laterally advected, oxygenated waters in this zone by aerobic microorganisms. In accordance, metagenomic and metatranscriptomic analyses identified genes encoding for aerobic terminal oxidases and demonstrated their expression by diverse microbial communities, even in virtually anoxic waters. Our...

  16. Aerobic microbial metabolism of condensed thiophenes found in petroleum

    International Nuclear Information System (INIS)

    The aerobic microbial degradation of 21 condensed thiophenes found in petroleum or synthetic fuels have been studied, motivated by recent research which showed that resistance to biodegradation increases with increasing methyl-substitution. The specific objective was to identify metabolites in pure cultures of aromatic hydrocarbon-degrading Pseudomonas spp. incubated in mineral medium in the presence of an aromatic growth substrate and a condensed thiophene. Over 80 metabolites of the condensed thiophenes were identified using gas chromatography analysis with an atomic emission detector. Among the metabolites identified were sulfoxides, sulfones, hydroxy- and carboxyl-substituted benzothiophenes, hydroxy-substituted dibenzothiophenes, substituted benzothiophene-2,3-diones, and 3-hydroxy-2-formylbenzothiophenes

  17. Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones

    DEFF Research Database (Denmark)

    Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene Mark;

    2015-01-01

    denitrification and alternative anaerobic pathways of organic matter remineralization cannot account for the ammonium requirements of reported anammox rates. Here, we explore the significance of microaerobic respiration as a source of ammonium during organic matter degradation in the oxygen-deficient waters off...... and laterally advected, oxygenated waters in this zone by aerobic microorganisms. In accordance, metagenomic and metatranscriptomic analyses identified genes encoding for aerobic terminal oxidases and demonstrated their expression by diverse microbial communities, even in virtually anoxic waters. Our......Oxygen minimum zones are major sites of fixed nitrogen loss in the ocean. Recent studies have highlighted the importance of anaerobic ammonium oxidation, anammox, in pelagic nitrogen removal. Sources of ammonium for the anammox reaction, however, remain controversial, as heterotrophic...

  18. Anaerobic microbial degradation of organochlorine insecticides Aldrin

    Energy Technology Data Exchange (ETDEWEB)

    Chiu, T.C.; Yen, J.H.; Wang, Y.S. [National Taiwan Univ. (Taiwan)

    2004-09-15

    Aldrin (1,2,3,4,10,10-hexachloro-1,4,4a,5,8,8a-hexahydro-1,4-endo-exo-5,8-dimethanonnaphthalene), a cyclodiene organochlorine insecticide, was banned by nations and classified as B2 carcinogen by United States Environmental Protection Agency (EPA). Because of its chemical stability and lipophilicity, aldrin is regarded as a persistent and recalcitrant compound. Aldrin is easily adsorbed to soil and sediment after spreading to the environments, furthermore, it may be accumulated in animal's tissue or milk and then cause adverse effects by food-chain. The dissipation process of aldrin in environments has continuously been paid much attention by researchers. In general, the dissipation of aldrin has been thought as relating to three mechanisms: photo-degradation, chemical hydrolysis, and microbial degradation. And it has been well known that microbial degradation is the most important agent for breakdown of organochlorine pesticides. There has been shown that aldrin could be transformed to its metabolites, such as dieldrin or photo-dieldrin, by microorganisms under aerobic conditions, however, limited information has been shown under anaerobic conditions. For this reason, the degradation potential of aldrin by anaerobic microorganisms obtained from indigenous river sediment was evaluated, and the effect of environmental factors such as temperatures and nutrients on the aldrin degradation was also investigated in this study.

  19. Microbial fuel cells with highly active aerobic biocathodes

    Science.gov (United States)

    Milner, Edward M.; Popescu, Dorin; Curtis, Tom; Head, Ian M.; Scott, Keith; Yu, Eileen H.

    2016-08-01

    Microbial fuel cells (MFCs), which convert organic waste to electricity, could be used to make the wastewater infrastructure more energy efficient and sustainable. However, platinum and other non-platinum chemical catalysts used for the oxygen reduction reaction (ORR) at the cathode of MFCs are unsustainable due to their high cost and long-term degradation. Aerobic biocathodes, which use microorganisms as the biocatalysts for cathode ORR, are a good alternative to chemical catalysts. In the current work, high-performing aerobic biocathodes with an onset potential for the ORR of +0.4 V vs. Ag/AgCl were enriched from activated sludge in electrochemical half-cells poised at -0.1 and + 0.2 V vs. Ag/AgCl. Gammaproteobacteria, distantly related to any known cultivated gammaproteobacterial lineage, were identified as dominant in these working electrode biofilms (23.3-44.3% of reads in 16S rRNA gene Ion Torrent libraries), and were in very low abundance in non-polarised control working electrode biofilms (0.5-0.7%). These Gammaproteobacteria were therefore most likely responsible for the high activity of biologically catalysed ORR. In MFC tests, a high-performing aerobic biocathode increased peak power 9-fold from 7 to 62 μW cm-2 in comparison to an unmodified carbon cathode, which was similar to peak power with a platinum-doped cathode at 70 μW cm-2.

  20. Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones.

    Directory of Open Access Journals (Sweden)

    Tim Kalvelage

    Full Text Available Oxygen minimum zones are major sites of fixed nitrogen loss in the ocean. Recent studies have highlighted the importance of anaerobic ammonium oxidation, anammox, in pelagic nitrogen removal. Sources of ammonium for the anammox reaction, however, remain controversial, as heterotrophic denitrification and alternative anaerobic pathways of organic matter remineralization cannot account for the ammonium requirements of reported anammox rates. Here, we explore the significance of microaerobic respiration as a source of ammonium during organic matter degradation in the oxygen-deficient waters off Namibia and Peru. Experiments with additions of double-labelled oxygen revealed high aerobic activity in the upper OMZs, likely controlled by surface organic matter export. Consistently observed oxygen consumption in samples retrieved throughout the lower OMZs hints at efficient exploitation of vertically and laterally advected, oxygenated waters in this zone by aerobic microorganisms. In accordance, metagenomic and metatranscriptomic analyses identified genes encoding for aerobic terminal oxidases and demonstrated their expression by diverse microbial communities, even in virtually anoxic waters. Our results suggest that microaerobic respiration is a major mode of organic matter remineralization and source of ammonium (~45-100% in the upper oxygen minimum zones, and reconcile hitherto observed mismatches between ammonium producing and consuming processes therein.

  1. Aerobic degradation of sulfanilic acid using activated sludge.

    Science.gov (United States)

    Chen, Gang; Cheng, Ka Yu; Ginige, Maneesha P; Kaksonen, Anna H

    2012-01-01

    This paper evaluates the aerobic degradation of sulfanilic acid (SA) by an acclimatized activated sludge. The sludge was enriched for over three months with SA (>500 mg/L) as the sole carbon and energy source and dissolved oxygen (DO, >5mg/L) as the primary electron acceptor. Effects of aeration rate (0-1.74 L/min), DO concentration (0-7 mg/L) and initial SA concentration (104-1085 mg/L) on SA biodegradation were quantified. A modified Haldane substrate inhibition model was used to obtain kinetic parameters of SA biodegradation and oxygen uptake rate (OUR). Positive linear correlations were obtained between OUR and SA degradation rate (R(2)≥ 0.91). Over time, the culture consumed more oxygen per SA degraded, signifying a gradual improvement in SA mineralization (mass ratio of O(2): SA at day 30, 60 and 120 were 0.44, 0.51 and 0.78, respectively). The concomitant release of near stoichiometric quantity of sulphate (3.2 mmol SO(4)(2-) released from 3.3 mmol SA) and the high chemical oxygen demand (COD) removal efficacy (97.1%) indicated that the enriched microbial consortia could drive the overall SA oxidation close to a complete mineralization. In contrast to other pure-culture systems, the ammonium released from the SA oxidation was predominately converted into nitrate, revealing the presence of ammonium-oxidizing bacteria (AOB) in the mixed culture. No apparent inhibitory effect of SA on the nitrification was noted. This work also indicates that aerobic SA biodegradation could be monitored by real-time DO measurement.

  2. Formation and functions of aerobic microbial granula; Entstehung und Funktionen aerober mikrobieller Granula

    Energy Technology Data Exchange (ETDEWEB)

    Etterer, T.; Wilderer, P.A. [Technische Univ. Muenchen, Garching (Germany). Lehrstuhl und Pruefamt fuer Wasserguete- und Abfallwirtschaft

    1999-07-01

    The present project investigates the phenomenon of the formation of aerobic microbial granula and their properties. To generate granula, sequencing batch reactors fed in batches were used. As shown by microbiological assays, fungi played an above-average role in granula formation and build-up. In first degradation experiments, furthermore, chemical oxygen demand (COD) could be reduced by over 90 %. The determination yielded comparable values to activated sludge, standing on average at 1.044g/ml. (orig.) [German] Im Rahmen des hier vorgestellten Projekts wurde das Phaenomen der Bildung aerober mikrobieller Granula sowie deren Eigenschaften untersucht. Zur Erzeugung von Granula wurden schubweise beschickte Reaktoren, sogenannte Sequencing-Batch-Reaktoren (SBR) verwendet. Wie mikrobiologische Untersuchungen zeigten spielen Pilze bei der Entstehung und beim Aufbau eine ueberdurchschnittliche Rolle. Des weiteren konnte in ersten Abbauversuchen der chemische Sauerstoff-Bedarf (CSB) um ueber 90% gesenkt werden. Die Dichtebestimmung ergab vergleichbare Werte zu Belebtschlamm und zwar im Durchschnitt 1,044 g/ml. (orig.)

  3. Degradation of acid orange 7 in an aerobic biofilm.

    Science.gov (United States)

    Coughlin, Michael F; Kinkle, Brian K; Bishop, Paul L

    2002-01-01

    A stable microbial biofilm community capable of completely mineralizing the azo dye acid orange 7 (AO7) was established in a laboratory scale rotating drum bioreactor (RDBR) using waste liquor from a sewage treatment plant. A broad range of environmental conditions including pH (5.8-8.2), nitrification (0.0-4.0 mM nitrite), and aeration (0.2-6.2 mg O2 l(-1)) were evaluated for their effects on the biodegradation of AO7. Furthermore the biofilm maintained its biodegradative ability for over a year while the effects of these environmental conditions were evaluated. Reduction of the azo bond followed by degradation of the resulting aromatic amine appears to be the mechanism by which this dye is biodegraded. Complete loss of color, sulfanilic acid, and chemical oxygen demand (COD) indicate that AO7 is mineralized. To our knowledge this is the first reported occurrence of a sulfonated phenylazonaphthol dye being completely mineralized under aerobic conditions. Two bacterial strains (ICX and SAD4i) originally isolated from the RDBR were able to mineralize, in co-culture, up to 90% of added AO7. During mineralization of AO7, strain ICX reduces the azo bond under aerobic conditions and consumes the resulting cleavage product 1-amino-2-naphthol. Strain SAD4i consumes the other cleavage product, sulfanilic acid. The ability of the RDBR biofilm to aerobically mineralize an azo dye without exogenous carbon and nitrogen sources suggests that this approach could be used to remediate industrial wastewater contaminated with spent dye.

  4. Biological degradation of triclocarban and triclosan in a soil under aerobic and anaerobic conditions and comparison with environmental fate modelling

    International Nuclear Information System (INIS)

    Triclocarban and triclosan are two antimicrobial agents widely used in many personal care products. Their biodegradation behaviour in soil was investigated by laboratory degradation experiments and environmental fate modelling. Quantitative structure-activity relationship (QSAR) analyses showed that triclocarban and triclosan had a tendency to partition into soil or sediment in the environment. Fate modelling suggests that either triclocarban or triclosan 'does not degrade fast' with its primary biodegradation half-life of 'weeks' and ultimate biodegradation half-life of 'months'. Laboratory experiments showed that triclocarban and triclosan were degraded in the aerobic soil with half-life of 108 days and 18 days, respectively. No negative effect of these two antimicrobial agents on soil microbial activity was observed in the aerobic soil samples during the experiments. But these two compounds persisted in the anaerobic soil within 70 days of the experimental period. - Triclocarban and triclosan can be degraded by microbial processes in aerobic soil, but will persist in anaerobic soil

  5. Aerobic degradation of 4-nitroaniline (4-NA) via novel degradation intermediates by Rhodococcus sp. strain FK48

    International Nuclear Information System (INIS)

    Highlights: • This study reports isolation of a novel bacterium capable of mineralizing 4-nitroaniline (4-NA). • This bacterium has been identified as Rhodococcus sp. strain FK48. • Strain FK48 degrades 4-NA via a novel aerobic degradation pathway that involves 4-AP and 1,2,4-BT. • Subsequent degradation proceeds via ring fission and formation of maleylacetate. • This is the first report showing elucidation of catabolic pathway for microbial degradation 4-NA. -- Abstract: An aerobic strain, Rhodococcus sp. strain FK48, capable of growing on 4-nitroaniline (4-NA) as the sole source of carbon, nitrogen, and energy has been isolated from enrichment cultures originating from contaminated soil samples. During growth studies with non- induced cells of FK48 catalyzed sequential denitrification (release of NO2 substituent) and deamination (release of NH2 substituent) of 4-NA. However, none of the degradation intermediates could be identified with growth studies. During resting cell studies, 4-NA-induced cells of strain FK48 transformed 4-NA via a previously unknown pathway which involved oxidative hydroxylation leading to formation of 4-aminophenol (4-AP). Subsequent degradation involved oxidated deamination of 4-AP and formation of 1,2,4-benzenetriol (BT) as the major identified terminal aromatic intermediate. Identification of these intermediates was ascertained by HPLC, and GC–MS analyses of the culture supernatants. 4-NA-induced cells of strain FK48 showed positive activity for 1,2,4-benzenetriol dioxygenase in spectrophotometric assay. This is the first conclusive study on aerobic microbial degradation of 4-NA and elucidation of corresponding metabolic pathway

  6. Effects of environmental conditions on aerobic degradation of a commercial naphthenic acid.

    Science.gov (United States)

    Kinley, Ciera M; Gaspari, Daniel P; McQueen, Andrew D; Rodgers, John H; Castle, James W; Friesen, Vanessa; Haakensen, Monique

    2016-10-01

    Naphthenic acids (NAs) are problematic constituents in energy-derived waters, and aerobic degradation may provide a strategy for mitigating risks to aquatic organisms. The overall objective of this study was to determine the influence of concentrations of N (as ammonia) and P (as phosphate), and DO, as well as pH and temperatures on degradation of a commercial NA in bench-scale reactors. Commercial NAs provided replicable compounds necessary to compare influences of environmental conditions on degradation. NAs were quantified using high performance liquid chromatography. Microbial diversity and relative abundance were measured in treatments as explanatory parameters for potential effects of environmental conditions on microbial populations to support analytically measured NA degradation. Environmental conditions that positively influenced degradation rates of Fluka NAs included nutrients (C:N 10:1-500:1, C:P 100:1-5000:1), DO (4.76-8.43 mg L(-1)), pH (6-8), and temperature (5-25 °C). Approximately 50% removal of 61 ± 8 mg L(-1) was achieved in less than 2 d after NA introduction, achieving the method detection limit (5 mg L(-1)) by day 6 of the experiment in treatments with a C:N:P ratio of 100:10:1, DO > 8 mg L(-1), pH ∼8-9, and temperatures >23 °C. Microbial diversity was lowest in lower temperature treatments (6-16 °C), which may have resulted in observed slower NA degradation. Based on results from this study, when macro- and micronutrients were available, DO, pH, and temperature (within environmentally relevant ranges) influenced rates of aerobic degradation of Fluka NAs. This study could serve as a model for systematically evaluating environmental factors that influence NA degradation in field scenarios. PMID:27459161

  7. Effects of environmental conditions on aerobic degradation of a commercial naphthenic acid.

    Science.gov (United States)

    Kinley, Ciera M; Gaspari, Daniel P; McQueen, Andrew D; Rodgers, John H; Castle, James W; Friesen, Vanessa; Haakensen, Monique

    2016-10-01

    Naphthenic acids (NAs) are problematic constituents in energy-derived waters, and aerobic degradation may provide a strategy for mitigating risks to aquatic organisms. The overall objective of this study was to determine the influence of concentrations of N (as ammonia) and P (as phosphate), and DO, as well as pH and temperatures on degradation of a commercial NA in bench-scale reactors. Commercial NAs provided replicable compounds necessary to compare influences of environmental conditions on degradation. NAs were quantified using high performance liquid chromatography. Microbial diversity and relative abundance were measured in treatments as explanatory parameters for potential effects of environmental conditions on microbial populations to support analytically measured NA degradation. Environmental conditions that positively influenced degradation rates of Fluka NAs included nutrients (C:N 10:1-500:1, C:P 100:1-5000:1), DO (4.76-8.43 mg L(-1)), pH (6-8), and temperature (5-25 °C). Approximately 50% removal of 61 ± 8 mg L(-1) was achieved in less than 2 d after NA introduction, achieving the method detection limit (5 mg L(-1)) by day 6 of the experiment in treatments with a C:N:P ratio of 100:10:1, DO > 8 mg L(-1), pH ∼8-9, and temperatures >23 °C. Microbial diversity was lowest in lower temperature treatments (6-16 °C), which may have resulted in observed slower NA degradation. Based on results from this study, when macro- and micronutrients were available, DO, pH, and temperature (within environmentally relevant ranges) influenced rates of aerobic degradation of Fluka NAs. This study could serve as a model for systematically evaluating environmental factors that influence NA degradation in field scenarios.

  8. Aerobic remediation of petroleum sludge through soil supplementation: Microbial community analysis

    International Nuclear Information System (INIS)

    Highlights: ► Enhanced aerobic-degradation of PAHs was noticed with increasing soil concentration. ► Lower ring PAHs showed superior degradation over higher ring PAHs. ► Role of dehydrogenase activity, redox pattern and dissolved oxygen was investigated. ► Community analysis detected survival of efficient aromatic degrading microorganisms. - Abstract: The effect of soil concentration on the aerobic degradation of real-field petroleum sludge was studied in slurry phase reactor. Total petroleum hydrocarbons (TPH) and polycyclic aromatic hydrocarbons (PAHs) showed effective removal but found to depend on the soil concentration. Aromatic fraction (48.12%) documented effective degradation compared to aliphatics (47.31%), NSO (28.69%) and asphaltenes (26.66%). PAHs profile showed efficient degradation of twelve individual aromatic compounds where lower ring compounds showed relatively higher degradation efficiency compared to the higher ring compounds. The redox behaviour and dehydrogenase activity showed a linear increment with the degradation pattern. Microbial community composition and changes during bioremediation were studied using denaturing gradient gel electrophoresis (DGGE). Among the 12 organisms identified, Proteobacteria was found to be dominant representing 50% of the total population (25% of γ-proteobacteria; 16.6% of β-proteobacteria; 8.3% of α-proteobacteria), while 33.3% were of uncultured bacteria and 16.6% were of firmicutes.

  9. Isolation of microorganisms capable of degrading isoquinoline under aerobic conditions.

    OpenAIRE

    Aislabie, J; Rothenburger, S; Atlas, R M

    1989-01-01

    Isoquinoline-degrading microbial cultures were isolated from oil- and creosote-contaminated soils. The establishment of initial enrichment cultures required the use of emulsified isoquinoline. Once growth on isoquinoline was established, isoquinoline emulsification was no longer required for utilization of isoquinoline as the sole source of carbon and nitrogen by these cultures. An isoquinoline-degrading Acinetobacter strain was isolated from one of the enrichment cultures. The degradation of...

  10. Microbial degradation of clomazone under simulated California rice field conditions.

    Science.gov (United States)

    Tomco, Patrick L; Holstege, Dirk M; Zou, Wei; Tjeerdema, Ronald S

    2010-03-24

    Clomazone (trade names Cerano and Command) is a popular herbicide used on California rice fields to control aquatic weeds. Its physicochemical characteristics indicate that it will persist primarily in the water column, where microbial degradation may drive its environmental fate. The objectives were to determine microbial degradation rates and compare the metabolic products under aerobic and anaerobic conditions similar to those in California rice fields during the summer. Time-series samples were extracted and analyzed by LC/MS/MS. Metabolic profiling revealed the following clomazone-derived transitions: m/z 240 --> 125 (clomazone), m/z 242 --> 125 (ring-open clomazone), m/z 256 --> 125 (5-hydroxyclomazone), m/z 256 --> 141 (aromatic hydroxyclomazone), m/z 268 --> 125 (unknown metabolite), and m/z 272 --> 141 (4'5-dihydroxyclomazone). Results indicate an anaerobic half-life of 7.9 days, with ring-open clomazone reaching 67.4% of application at 38 days. Aerobically, clomazone degraded more slowly (t(1/2) = 47.3 days), forming mostly soil-bound residues. Thus, under summer conditions, clomazone is likely to dissipate rapidly from fields via anaerobic degradation.

  11. Ammonium-oxidizing bacteria facilitate aerobic degradation of sulfanilic acid in activated sludge.

    Science.gov (United States)

    Chen, Gang; Ginige, Maneesha P; Kaksonen, Anna H; Cheng, Ka Yu

    2014-01-01

    Sulfanilic acid (SA) is a toxic sulfonated aromatic amine commonly found in anaerobically treated azo dye contaminated effluents. Aerobic acclimatization of SA-degrading mixed microbial culture could lead to co-enrichment of ammonium-oxidizing bacteria (AOB) because of the concomitant release of ammonium from SA oxidation. To what extent the co-enriched AOB would affect SA oxidation at various ammonium concentrations was unclear. Here, a series of batch kinetic experiments were conducted to evaluate the effect of AOB on aerobic SA degradation in an acclimatized activated sludge culture capable of oxidizing SA and ammonium simultaneously. To account for the effect of AOB on SA degradation, allylthiourea was used to inhibit AOB activity in the culture. The results indicated that specific SA degradation rate of the mixed culture was negatively correlated with the initial ammonium concentration (0-93 mM, R²= 0.99). The presence of AOB accelerated SA degradation by reducing the inhibitory effect of ammonium (≥ 10 mM). The Haldane substrate inhibition model was used to correlate substrate concentration (SA and ammonium) and oxygen uptake rate. This study revealed, for the first time, that AOB could facilitate SA degradation at high concentration of ammonium (≥ 10 mM) in an enriched activated sludge culture.

  12. Aerobic granules: microbial landscape and architecture, stages, and practical implications.

    Science.gov (United States)

    Gonzalez-Gil, Graciela; Holliger, Christof

    2014-06-01

    For the successful application of aerobic granules in wastewater treatment, granules containing an appropriate microbial assembly able to remove contaminants should be retained and propagated within the reactor. To manipulate and/or optimize this process, a good understanding of the formation and dynamic architecture of the granules is desirable. Models of granules often assume a spherical shape with an outer layer and an inner core, but limited information is available regarding the extent of deviations from such assumptions. We report on new imaging approaches to gain detailed insights into the structural characteristics of aerobic granules. Our approach stained all components of the granule to obtain a high quality contrast in the images; hence limitations due to thresholding in the image analysis were overcome. A three-dimensional reconstruction of the granular structure was obtained that revealed the mesoscopic impression of the cavernlike interior of the structure, showing channels and dead-end paths in detail. In "old" granules, large cavities allowed for the irrigation and growth of dense microbial colonies along the path of the channels. Hence, in some areas, paradoxically higher biomass content was observed in the inner part of the granule compared to the outer part. Microbial clusters "rooting" from the interior of the mature granule structure indicate that granules mainly grow via biomass outgrowth and not by aggregation of small particles. We identify and discuss phenomena contributing to the life cycle of aerobic granules. With our approach, volumetric tetrahedral grids are generated that may be used to validate complex models of granule formation. PMID:24657859

  13. Combined Anaerobic-Aerobic Bacterial Degradation of Dyes

    OpenAIRE

    R. Wilfred Sugumar; Sandhya Sadanandan

    2010-01-01

    Wastewaters from the dye baths of a non-formal textile-dyeing unit containing C.I. Acid Orange 7 and C.I. Reactive Red 2 were subjected to degradation in a sequential anaerobic-aerobic treatment process based on mixed culture of bacteria. The technical samples of the dyestuffs and the dye bath wastes were treated in an anaerobic reactor, using an adapted mixed culture of anaerobic microorganisms. The dyestuffs were biotransformed into colourless substituted amine metabolites in the reactor. T...

  14. Aerobic Degradation of Trichloroethylene by Co-Metabolism Using Phenol and Gasoline as Growth Substrates

    OpenAIRE

    Yan Li; Bing Li; Cui-Ping Wang; Jun-Zhao Fan; Hong-Wen Sun

    2014-01-01

    Trichloroethylene (TCE) is a common groundwater contaminant of toxic and carcinogenic concern. Aerobic co-metabolic processes are the predominant pathways for TCE complete degradation. In this study, Pseudomonas fluorescens was studied as the active microorganism to degrade TCE under aerobic condition by co-metabolic degradation using phenol and gasoline as growth substrates. Operating conditions influencing TCE degradation efficiency were optimized. TCE co-metabolic degradation rate reached ...

  15. Toxicity of vapor phase petroleum contaminants to microbial degrader communities

    International Nuclear Information System (INIS)

    Petroleum products constitute the largest quantity of synthetic organic chemical products produced in the US. They are comprised of mostly hydrocarbon constituents from many different chemical classes including alkenes, cycloalkanes, aromatic compounds, and polyaromatic hydrocarbons. Many petroleum constituents are classified as volatile organic compounds or VOCs. Petroleum products also constitute a major portion of environmental pollution. One emerging technology, with promise for applications to VOCs in subsurface soil environments, is bioventing coupled with soil vapor extraction. These technologies involve volatilization of contaminants into the soil gas phase by injection and withdrawal of air. This air movement causes enhancement of the aerobic microbial degradation of the mobilized vapors by the indigenous populations. This study investigated the effects of exposure of mixed, subsurface microbial communities to vapor phase petroleum constituents or vapors of petroleum mixtures. Soil slurries were prepared and plated onto mineral salts agar plates and exposed to vapor phase contaminants at equilibrium with pure product. Representative n-alkane, branched alkane, cycloalkane, and aromatic compounds were tested as well as petroleum product mixtures. Vapor exposure altered the numbers and morphologies of the colonies enumerated when compared to controls. However, even at high, equilibrium vapor concentrations, microbial degrader populations were not completely inhibited

  16. Sorption and degradation of bisphenol A by aerobic activated sludge

    International Nuclear Information System (INIS)

    Laboratory-scale batch experiments were conducted to investigate the sorption and degradation of bisphenol A (BPA) at μg/L range in an aerobic activated sludge system. The sorption isotherms and thermodynamics indicated that the sorption of BPA on sludge was mainly a physical process in which partitioning played a dominating role. The values of sorption coefficient Koc were between 621 and 736 L/kg in the temperature range of 10-30 deg. C. Both mixed liquor suspended solid (MLSS) and temperature influenced BPA sorption on sludge. The degradation of BPA by acclimated activated sludge could be described by first-order reaction equation with the first-order degradation rate constant of 0.80 h-1 at 20 deg. C. The decrease of initial COD concentration and the increase of MLSS concentration and temperature enhanced BPA degradation rate. The removal of BPA in the activated sludge system was characterized by a quick sorption on the activated sludge and subsequent biodegradation

  17. Microbial Aspects of Anaerobic BTEX Degradation

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Combined with conventional methods, developments in both geochemical (delineation of redox processes) and molecular microbial methods (analysis of 16S rDNA genes and functional genes) have allowed us to study in details microorganisms and genes involved in the anaerobic degradation of benzene, toluene, ethylbenzene and xylene (BTEX) under specific redox conditions. This review summarizes recent research in this field. The potential for anaerobic BTEX degradation is widely spread. Specific groups of microorganisms appear to be involved in degradation under different redox conditions. Members of the Azoarcus/Thauera cluster perform BTEX degradation under denitrifying conditions, Geobacteraceae under Fe (III) reducing conditions and Desulfobacteriaceae under sulfate reducing conditions. The information so far obtained on biochemistry and molecular genetics of BTEX degradation indicates that each BTEX compound is funneled into the central benzyol-CoA pathway by a different peripheral pathway. The peripheral pathways of per BTEX compound show similarities among different physiological groups of microorganisms. We also describe how knowledge obtained on the microbial aspects of BTEX degradation can be used to enhance and monitor anaerobic BTEX degradation.

  18. Biological degradation of triclocarban and triclosan in a soil under aerobic and anaerobic conditions and comparison with environmental fate modelling

    Energy Technology Data Exchange (ETDEWEB)

    Ying Guangguo [State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640 (China); CSIRO Land and Water, Adelaide Laboratory, PMB2, Glen Osmond SA 5064 (Australia)], E-mail: guang-guo.ying@gig.ac.cn; Yu Xiangyang [CSIRO Land and Water, Adelaide Laboratory, PMB2, Glen Osmond SA 5064 (Australia); Food Safety Research Institute, Jiangsu Academy of Agricultural Sciences, Nanjing 210014 (China); Kookana, Rai S. [CSIRO Land and Water, Adelaide Laboratory, PMB2, Glen Osmond SA 5064 (Australia)

    2007-12-15

    Triclocarban and triclosan are two antimicrobial agents widely used in many personal care products. Their biodegradation behaviour in soil was investigated by laboratory degradation experiments and environmental fate modelling. Quantitative structure-activity relationship (QSAR) analyses showed that triclocarban and triclosan had a tendency to partition into soil or sediment in the environment. Fate modelling suggests that either triclocarban or triclosan 'does not degrade fast' with its primary biodegradation half-life of 'weeks' and ultimate biodegradation half-life of 'months'. Laboratory experiments showed that triclocarban and triclosan were degraded in the aerobic soil with half-life of 108 days and 18 days, respectively. No negative effect of these two antimicrobial agents on soil microbial activity was observed in the aerobic soil samples during the experiments. But these two compounds persisted in the anaerobic soil within 70 days of the experimental period. - Triclocarban and triclosan can be degraded by microbial processes in aerobic soil, but will persist in anaerobic soil.

  19. Aerobic degradation of N-methyl-4-nitroaniline (MNA by Pseudomonas sp. strain FK357 isolated from soil.

    Directory of Open Access Journals (Sweden)

    Fazlurrahman Khan

    Full Text Available N-Methyl-4-nitroaniline (MNA is used as an additive to lower the melting temperature of energetic materials in the synthesis of insensitive explosives. Although the biotransformation of MNA under anaerobic condition has been reported, its aerobic microbial degradation has not been documented yet. A soil microcosms study showed the efficient aerobic degradation of MNA by the inhabitant soil microorganisms. An aerobic bacterium, Pseudomonas sp. strain FK357, able to utilize MNA as the sole carbon, nitrogen, and energy source, was isolated from soil microcosms. HPLC and GC-MS analysis of the samples obtained from growth and resting cell studies showed the formation of 4-nitroaniline (4-NA, 4-aminophenol (4-AP, and 1, 2, 4-benzenetriol (BT as major metabolic intermediates in the MNA degradation pathway. Enzymatic assay carried out on cell-free lysates of MNA grown cells confirmed N-demethylation reaction is the first step of MNA degradation with the formation of 4-NA and formaldehyde products. Flavin-dependent transformation of 4-NA to 4-AP in cell extracts demonstrated that the second step of MNA degradation is a monooxygenation. Furthermore, conversion of 4-AP to BT by MNA grown cells indicates the involvement of oxidative deamination (release of NH2 substituent reaction in third step of MNA degradation. Subsequent degradation of BT occurs by the action of benzenetriol 1, 2-dioxygenase as reported for the degradation of 4-nitrophenol. This is the first report on aerobic degradation of MNA by a single bacterium along with elucidation of metabolic pathway.

  20. Bioaugmentation of aerobic sludge granules with a plasmid donor strain for enhanced degradation of 2,4-dichlorophenoxyacetic acid

    International Nuclear Information System (INIS)

    Aerobic sludge granules pre-grown on glucose were bioaugmented with a plasmid pJP4 carrying strain Pseudomonas putida SM1443 in a fed-batch microcosm system and a lab-scale sequencing batch reactor (SBR) to enhance their degradation capacity to 2,4-dichlorophenoxyacetic acid (2,4-D). The fed-batch test results showed that the bioaugmented aerobic granule system gained 2,4-D degradation ability faster and maintained a more stable microbial community than the control in the presence of 2,4-D. 2,4-D at the initial concentration of about 160 mg/L was nearly completely removed by the bioaugmented granule system within 62 h, while the control system only removed 26% within 66 h. In the bioaugmented SBR which had been operated for 90 days, the seeded aerobic granules pre-grown on glucose successfully turned into 2,4-D degrading granules through bioaugmentation and stepwise increase of 2,4-D concentration from 8 to 385 mg/L. The granules showed a compact structure and good settling ability with the mean diameter of about 450 μm. The degradation kinetics of 2,4-D by the aerobic granules can be described with the Haldane kinetics model with Vmax = 31.1 mg 2,4-D/gVSS h, Ki = 597.9 mg/L and Ks = 257.3 mg/L, respectively. This study shows that plasmid mediated bioaugmentation is a feasible strategy to cultivate aerobic granules degrading recalcitrant pollutants.

  1. EVALUATION OF A TWO-STAGE TREATMENT OF DOMESTIC SEWAGE WITH ANAEROBIC-AEROBIC MICROBIAL FILM

    OpenAIRE

    A.Mesdaghinia

    1986-01-01

    The objective of this research was to study the feasibility of a two stage continuous system employing anaerobic-aerobic microbial film for domestic wastewater treatment and the effect of iron on the behavior of sulfate reducing bacteria in anaerobic metabolism. A bench scale system with an anaerobic filter followed by aerobic fixed units used plastic media and was operated in up flow manner with hydraulic detention times of 6 hours, whereas the aerobic unit utilized diffused aeration. Raw do...

  2. Trichloroethylene degradation by subsurface microbial communities

    International Nuclear Information System (INIS)

    This paper analyzes some of the monitoring data, the effects of methane dosing on methanotrophic populations, and the trichloroethylene (TCE) degradation potentials of the microbial communities from an in situ bioremediation demonstration at the U.S. Department of Energy/Office of Technology Development, Westinghouse Savannah River Site (WSRS). A series of treatments were delivered into a lower horizontal well coupled with vacuum extraction from a vadose zone horizontal well to stimulate TCE-degrading microorganisms. A control phase without treatment was followed by air injection, injection of 1% methane in air, 4% methane in air, pulsed methane and air injection, and continuous addition of triethyl phosphate and nitrous oxide in air with pulsed additions of methane and air. Microbial monitoring was utilized to demonstrate the effectiveness of bioremediation and to optimize the treatment regimes and continued for a few months after termination of all treatments. Examination of the methane present in specific wells indicated that methanotrophic populations responded to methane delivery, whereas TCE degradation capacity was not as directly tied to the methane availability. Other factors such as nitrate and phosphate availability apparently played a crucial role in the TCE degradation activity

  3. Aerobic Microbial Skin Flora in Jeddah City, Saudi Arabia

    Directory of Open Access Journals (Sweden)

    Rajaa M. Milyani

    2001-12-01

    Full Text Available The aerobic microbial skin flora of 40 healthy subjects living in Jeddah city (Saudi Arabia was determined. Two age groups: children and adults; including males and females were investigated. Seven sites were studied: forehead, axilla, chest, groin, leg, toe web and anterior nares. The skin was sampled by rubbing the chosen site with a surfactant substance (Tween 80 moistened cotton swab which was dipped back in the surfactant container and the resulted suspension was agitated for one minute. Thirty three microbial species were isolated from the seven sites of the study group, in which Acinetobacter baumannii, Acinetobacter lwoffii, corynebacterium species and Staphylococcus (Staph. aureus dominated among children (30% each. The most other prevalent isolates recovered were Alkaligenes species, Bacillus species, Chryseomonas luteola, Staph. epidermidis, Enterococcus faecalis and Staph. hominis (27.5% each. Organisms including Candida albicans, Enterobacter agglomerans, Escherichia coli, Flavobacterium meningosepticum, Klebsiella oxytoca, Micrococcus luteus, Micrococcus roseus, Micrococcus varians, Micrococcus species, Burkholderia cepacia, Stenotrophomonas maltophilia, Pseudomonas paucimobilis, Pseudomonas fluorescence, Pseudomonas species, Staph. capitis, Staph. cohnii, Staph. saprophyticus, Staph. simulans, Staph. warneri, Staph. xylosus, viridans-type streptococcus and yeasts were also found in different percentage. Higher isolation rates of Acinetobacter lwoffii, Staph. aureus, Alkaligenes species, Corynebacterium species, Chryseomonas luteola, Enterobacter agglomerans, Staph. epidermidis and other coagulase negative Staphylococci were noted in children from the seven sites. However, Chryseomonas luteola, and Pseudomonas species, were found only in the groin area among males. Otherwise, no significant differences were recorded in the isolation rates from each site separately in relation to age and sex. The role of the isolated microorganisms

  4. Microbial Degradation of Aniline by Bacterial Consortium

    Institute of Scientific and Technical Information of China (English)

    JIAN-LONG WANG; ZE-YU MAO; WEI-ZHONG WU

    2003-01-01

    Objective To investigate the characteristics of microbial degradation of aniline by a stable bacterial consortium. Methods The bacterial consortium was isolated from activated sludge treating chemical wastewater using aniline as the sole source of carbon and nitrogen by enrichment and isolation technique. The biomass was measured as optical density (OD) at 510 nm using a spectrophotometer. Aniline concentrations were determined by spectrophotometer. The intermediates of aniline degradation were identified by GC/MS method. Results The bacterial consortium could grow at a range of aniline concentrations between 50 and 500 mg/L. The optimal pH and temperature for aniline degradation were determined to be 7.0 and 30, respectively. The presence of NH4NO3 as an additional nitrogen source (100-500 mg/L) had no adverse effect on bacterial growth and aniline degradation. The presence of heavy metal ions, such as Co2+, Zn2+, Ni2+, Mn2+ and Cu2+ had an inhibitory effect on aniline degradation. Conclusions The isolated bacterial consortium candegrade aniline up to 500 mg/L effectively and tolerate some heavy metal ions that commonly exist in chemical wastewater. It has a potential to be applied in the practical treatment of aniline-containingwastewater.

  5. Importance of Unattached Bacteria and Bacteria Attached to Sediment in Determining Potentials for Degradation of Xenobiotic Organic Contaminants in an Aerobic Aquifer

    DEFF Research Database (Denmark)

    Nielsen, Per Henning; Albrechtsen, Hans-Jørgen; Christensen, Thomas Højlund;

    1992-01-01

    The bacterial abundance, distribution, and degradation potential (in terms of degradation versus lack of degradation) for four xenobiotic compounds in an aerobic aquifer sediment have been examined in laboratory and field experiments. The xenobiotic compounds studied were benzene, toluene, o......-xylene, and naphthalene (all at concentrations of approximately 120 pg/liter). The aerobic degradation experiments ran for approximately 90 days at 10°C, which corresponded to the groundwater temperature. At the end of the experiment, the major part of the microbial biomass, quantified as acridine orange direct counts...... for studying the degradation potential for xenobiotic organic contaminants should contain sediment to obtain the highest numbers of bacteria as well as the broadest and most stable degradation. When only the fine (silt- and clay-size) particles of the sediment were used, nearly the same advantages were gained...

  6. Degradation of TCE using sequential anaerobic biofilm and aerobic immobilized bed reactor

    Science.gov (United States)

    Chapatwala, Kirit D.; Babu, G. R. V.; Baresi, Larry; Trunzo, Richard M.

    1995-01-01

    Bacteria capable of degrading trichloroethylene (TCE) were isolated from contaminated wastewaters and soil sites. The aerobic cultures were identified as Pseudomonas aeruginosa (four species) and Pseudomonas fluorescens. The optimal conditions for the growth of aerobic cultures were determined. The minimal inhibitory concentration values of TCE for Pseudomonas sps. were also determined. The aerobic cells were immobilized in calcium alginate in the form of beads. Degradation of TCE by the anaerobic and dichloroethylene (DCE) by aerobic cultures was studied using dual reactors - anaerobic biofilm and aerobic immobilized bed reactor. The minimal mineral salt (MMS) medium saturated with TCE was pumped at the rate of 1 ml per hour into the anaerobic reactor. The MMS medium saturated with DCE and supplemented with xylenes and toluene (3 ppm each) was pumped at the rate of 1 ml per hour into the fluidized air-uplift-type reactor containing the immobilized aerobic cells. The concentrations of TCE and DCE and the metabolites formed during their degradation by the anaerobic and aerobic cultures were monitored by GC. The preliminary study suggests that the anaerobic and aerobic cultures of our isolates can degrade TCE and DCE.

  7. Microbially influenced degradation of concrete structures

    Science.gov (United States)

    Rogers, Robert D.; Hamilton, Melinda A.; Nelson, Lee O.

    1998-03-01

    Steel reinforced concrete is the most widely used construction material in the world. The economic costs of repair or replacement of environmentally damaged concrete structures is astronomical. For example, half of the concrete bridges in the Federal Department of Transportation highway system are in need of major repairs. Microbially influenced degradation of concrete (MID) is one of the recognized degradative processes known to adversely affect concrete integrity. It is not possible to assign a specific percent of effect to any of these processes. However, MID has been shown to be as aggressive as any of the physical/chemical phenomena. In addition, the possibility exists that there is a synergism which results in cumulative effects from all the processes. Three groups of bacteria are known to promote MID. Of these, sulfur-oxidizing bacteria (SOB) are the most aggressive. Much is known about the nutritional needs of these bacteria. However, there has not been a biological linkage established between the presence of environmental, polluting sulfur sources and the degradation of concrete structures. It has been shown that the environmental pollutants sulfur dioxide and sulfite can be utilized by active SOB for the biological production of sulfuric acid. Therefore, it is not a reach of reality to assume that SOB exposed to these pollutants could have a major impact on the degradation of concrete structures. But, until the environment sulfur loop is closed it will not be possible to calculate how important SOB activity is in initiating and promoting damage.

  8. Microbial Degradation of Organic Wastes at Low Temperatures.

    Directory of Open Access Journals (Sweden)

    K.V. Ramana

    2000-10-01

    Full Text Available Microbial degradation of organic wastes mainly comprising animal and human wastes, is drastically reduced at extreme low temperatures. For the biodegradation of these wastes, technological inputs are required from disciplines like microbiology, biochemistry, molecular biology, digester modelling and heat transfer at extreme low temperature climates. Various steps in the process of biodegradation have to be studied to formulate an effective organic waste disposal method. Anaerobic digestion of organic wastes is preferred over aerobic waste treatment method, since it yields biogas as a by-product, which in turn can be utilised for heating the digester contents to increase its efficiency. Furthermore, one of the possibilities that can be explored is the utilisation of high rate anaerobic digesters which maintain temperature by means of artificial heating. It is either met by non-conventional energy sources, such as solar and wind energy, or by expending liquid fuels. In addition, insulation of the digester with polymeric materials and immobilisation of slow growing bacterial population may enhance the digester performance to a great extent. In spite of several developments, inoculum adaptation is considered to be one of the essential steps for low temperature anaerobic digestion to obtain methane as a by-product. With advancements in recombinant DNA technology, it may be possible to increase the efficiency of various microbial population that take part in the anaerobic digestion. However, till date, the options available for low temperature biodegradation are digester insulation, inoculum adaptation, and use of high rate/second-generation digesters.

  9. The degradability of biodegradable plastics in aerobic and anaerobic waste landfill model reactors.

    Science.gov (United States)

    Ishigaki, Tomonori; Sugano, Wataru; Nakanishi, Akane; Tateda, Masafumi; Ike, Michihiko; Fujita, Masanori

    2004-01-01

    Degradabilities of four kinds of commercial biodegradable plastics (BPs), polyhydroxybutyrate and hydroxyvalerate (PHBV) plastic, polycaprolactone plastic (PCL), blend of starch and polyvinyl alcohol (SPVA) plastic and cellulose acetate (CA) plastic were investigated in waste landfill model reactors that were operated as anaerobically and aerobically. The application of forced aeration to the landfill reactor for supplying aerobic condition could potentially stimulate polymer-degrading microorganisms. However, the individual degradation behavior of BPs under the aerobic condition was completely different. PCL, a chemically synthesized BP, showed film breakage under the both conditions, which may have contributed to a reduction in the waste volume regardless of aerobic or anaerobic conditions. Effective degradation of PHBV plastic was observed in the aerobic condition, though insufficient degradation was observed in the anaerobic condition. But the aeration did not contribute much to accelerate the volume reduction of SPVA plastic and CA plastic. It could be said that the recalcitrant portions of the plastics such as polyvinyl alcohol in SPVA plastic and the highly substituted CA in CA plastic prevented the BP from degradation. These results indicated existence of the great variations in the degradability of BPs in aerobic and anaerobic waste landfills, and suggest that suitable technologies for managing the waste landfill must be combined with utilization of BPs in order to enhance the reduction of waste volume in landfill sites. PMID:14575734

  10. Aerobic degradation potential of the herbicides mecoprop, dichlorprop and bentazone in groundwater from chalk aquifers

    DEFF Research Database (Denmark)

    Levi, Suzi; Hybel, Anne-Marie; Bjerg, Poul Løgstrup;

    2011-01-01

    The aerobic degradation potential of mecoprop, dichlorprop and bentazone was studied at concentration of 1 μg/L in laboratory batch experiments with groundwater from chalk aquifers. Within the incubation period of 129 days, 14C-mecoprop concentration decreased to 60-80% in the microcosms with gro......The aerobic degradation potential of mecoprop, dichlorprop and bentazone was studied at concentration of 1 μg/L in laboratory batch experiments with groundwater from chalk aquifers. Within the incubation period of 129 days, 14C-mecoprop concentration decreased to 60-80% in the microcosms...... with groundwater collected from two monitoring wells (Well 1 and 2). Dichlorprop degradation was neither observed under aerobic nor anaerobic conditions, while 17-27% of the initial concentration of 14C-bentazone was removed. The results indicated a degradation potential of mecoprop and bentazone under aerobic...

  11. Microbial-influenced cement degradation: Literature review

    International Nuclear Information System (INIS)

    The Nuclear Regulatory Commission stipulates that disposed low-level radioactive waste (LLW) be stabilized. Because of apparent ease of use and normal structural integrity, cement has been widely used as a binder to solidify LLW. However, the resulting waste forms are sometimes susceptible to failure due to the actions of waste constituents, stress, and environment. This report reviews literature which addresses the effect of microbiologically influenced chemical attack on cement-solidified LLW. Groups of microorganisms are identified, which are capable of metabolically converting organic and inorganic substrates into organic and mineral acids. Such acids aggressively react with concrete and can ultimately lead to structural failure. Mechanisms inherent in microbial-influenced degradation of cement-based material are the focus of this report. This report provides sufficient evidence of the potential for microbial-influenced deterioration of cement-solidified LLW to justify the enumeration of the conditions necessary to support the microbiological growth and population expansion, as well as the development of appropriate tests necessary to determine the resistance of cement-solidified LLW to microbiological-induced degradation that could impact the stability of the waste form

  12. Microbial transformation of 8:2 fluorotelomer acrylate and methacrylate in aerobic soils.

    Science.gov (United States)

    Royer, Laurel A; Lee, Linda S; Russell, Mark H; Nies, Loring F; Turco, Ronald F

    2015-06-01

    Biotransformation of fluorotelomer (FT) compounds, such as 8:2 FT alcohol (FTOH) is now recognized to be a source of perfluorooctanoic acid (PFOA) as well as other perfluoroalkyl acids. In this study, microbially mediated hydrolysis of FT industrial intermediates 8:2 FT acrylate (8:2 FTAC) and 8:2 FT methacrylate (8:2 FTMAC) was evaluated in aerobic soils for up to 105d. At designated times, triplicate microcosms were sacrificed by sampling the headspace for volatile FTOHs followed by sequential extraction of soil for the parent monomers as well as transient and terminal degradation products. Both FTAC and FTMAC were hydrolyzed at the ester linkage as evidenced by 8:2 FTOH production. 8:2 FTAC and FTMAC degraded rapidly with half-lives ⩽5d and 15d, respectively. Maximum 8:2 FTOH levels were 6-13mol% within 3-6d. Consistent with the known biotransformation pathway of 8:2 FTOH, FT carboxylic acids and perfluoroalkyl carboxylic acids were subsequently generated including up to 10.3mol% of PFOA (105d). A total mass balance (parent plus metabolites) of 50-75mol% was observed on the last sampling day. 7:2 sFTOH, a direct precursor to PFOA, unexpectedly increased throughout the incubation period. The likely, but unconfirmed, concomitant production of acrylic acids was proposed as altering expected degradation patterns. Biotransformation of 8:2 FTAC, 8:2 FTMAC, and previously reported 8:2 FT-stearate for the same soils revealed the effect of the non-fluorinated terminus group linked to the FT chain on the electronic differences that affect microbially-mediated ester cleavage rates.

  13. Degradation of weathered diesel fuel by microorganisms from a contaminated aquifer in aerobic and anaerobic microcosms

    International Nuclear Information System (INIS)

    A diesel fuel-contaminated aquifer in Menziken, Canton of Aargau, Switzerland, was in situ bioremediated from 1989 to 1994 by adding O2, NO3-, PO43-, and NH4+ through an infiltration well. After a remediation time of 3.5 years, aquifer material from the contaminated zone was excavated and found to contain > 106 hydrocarbon-degrading microorganisms/g and 1.15 ± 0.15 mg/g weathered diesel fuel comprising mainly isoprenoid alkanes and an unresolved complex mixture (UCM) of unknown components. Samples of this material were incubated for up to 470 days in aerobic and anaerobic microcosms. The microbial activity was determined by measuring the production of inorganic carbon and the consumption of O2 and NO3-. The degradation of the weathered diesel fuel was quantified by infrared spectroscopy and by capillary gas chromatography. In aerobic microcosms, all isoprenoid alkanes and most of the UCM were biodegraded as long as a nitrogen source was present. The O2 consumption could be stimulated by adding KH2PO4 and by elevating the temperature to 22 C. In anaerobic microcosms with KNO3, NO3- was consumed, inorganic carbon was produced, and the isoprenoid alkanes and the UCM were partially metabolized. In some selected microcosms, the NO3- consumption rate was stimulated by adding external substrates such as toluene, o-xylene, m-xylene, p-xylene, n-alkanes, or fatty acids. Mineralization of toluene, naphthalene, and hexadecane to CO2 under denitrifying conditions was confirmed by using [14C]-labelled substrates

  14. Limitations of microbial hydrocarbon degradation at the Amon mud volcano (Nile deep-sea fan

    Directory of Open Access Journals (Sweden)

    J. Felden

    2013-05-01

    Full Text Available The Amon mud volcano (MV, located at 1250 m water depth on the Nile deep-sea fan, is known for its active emission of methane and non-methane hydrocarbons into the hydrosphere. Previous investigations showed a low efficiency of hydrocarbon-degrading anaerobic microbial communities inhabiting the Amon MV center in the presence of sulfate and hydrocarbons in the seeping subsurface fluids. By comparing spatial and temporal patterns of in situ biogeochemical fluxes, temperature gradients, pore water composition, and microbial activities over 3 yr, we investigated why the activity of anaerobic hydrocarbon degraders can be low despite high energy supplies. We found that the central dome of the Amon MV, as well as a lateral mud flow at its base, showed signs of recent exposure of hot subsurface muds lacking active hydrocarbon degrading communities. In these highly disturbed areas, anaerobic degradation of methane was less than 2% of the methane flux. Rather high oxygen consumption rates compared to low sulfide production suggest a faster development of more rapidly growing aerobic hydrocarbon degraders in highly disturbed areas. In contrast, the more stabilized muds surrounding the central gas and fluid conduits hosted active anaerobic hydrocarbon-degrading microbial communities. The low microbial activity in the hydrocarbon-vented areas of Amon MV is thus a consequence of kinetic limitations by heat and mud expulsion, whereas most of the outer MV area is limited by hydrocarbon transport.

  15. Theagalloflavic Acid, a New Pigment Derived from Hexahydroxydiphenoyl Group, and Lignan Oxidation Products Produced by Aerobic Microbial Fermentation of Green Tea.

    Science.gov (United States)

    Matsuo, Yosuke; Matsuda, Tomoko; Sugihara, Keisuke; Saito, Yoshinori; Zhang, Ying-Jun; Yang, Chong-Ren; Tanaka, Takashi

    2016-01-01

    Chinese ripe pu-erh tea is produced by aerobic microbial fermentation of green tea. To clarify the microbial degradation of tea polyphenols, Japanese commercial green tea was mixed with Chinese ripe pu-erh tea, which retains microorganisms, and fermented for 5 d. Chromatographic separation yielded a novel water-soluble yellow pigment termed theagalloflavic acid. Spectroscopic and chemical evidence suggested that this pigment was produced by oxidative ring cleavage of hexahydroxydiphenoyl esters. In addition, two new oxygenated lignin metabolites, (+)-5,5'-dihydroxypinoresinol and 5-hydroxydihydrodehydrodiconiferyl alcohol, were also isolated together with known degradation products of quercetin and tea catechins. PMID:27373646

  16. Physiological and functional diversity of phenol degraders isolated from phenol-grown aerobic granules: Phenol degradation kinetics and trichloroethylene co-metabolic activities.

    Science.gov (United States)

    Zhang, Yi; Tay, Joo Hwa

    2016-03-15

    Aerobic granule is a novel form of microbial aggregate capable of degrading toxic and recalcitrant substances. Aerobic granules have been formed on phenol as the growth substrate, and used to co-metabolically degrade trichloroethylene (TCE), a synthetic solvent not supporting aerobic microbial growth. Granule formation process, rate limiting factors and the comprehensive toxic effects of phenol and TCE had been systematically studied. To further explore their potential at the level of microbial population and functions, phenol degraders were isolated and purified from mature granules in this study. Phenol and TCE degradation kinetics of 15 strains were determined, together with their TCE transformation capacities and other physiological characteristics. Isolation in the presence of phenol and TCE exerted stress on microbial populations, but the procedure was able to preserve their diversity. Wide variation was found with the isolates' kinetic behaviors, with the parameters often spanning 3 orders of magnitude. Haldane kinetics described phenol degradation well, and the isolates exhibited actual maximum phenol-dependent oxygen utilization rates of 9-449 mg DO g DW(-1) h(-1), in phenol concentration range of 4.8-406 mg L(-1). Both Michaelis-Menten and Haldane types were observed for TCE transformation, with the actual maximum rate of 1.04-21.1 mg TCE g DW(-1) h(-1) occurring between TCE concentrations of 0.42-4.90 mg L(-1). The TCE transformation capacities and growth yields on phenol ranged from 20-115 mg TCE g DW(-1) and 0.46-1.22 g DW g phenol(-1), respectively, resulting in TCE transformation yields of 10-70 mg TCE g phenol(-1). Contact angles of the isolates were between 34° and 82°, suggesting both hydrophobic and hydrophilic cell surface. The diversity in the isolates is a great advantage, as it enables granules to be versatile and adaptive under different operational conditions.

  17. Physiological and functional diversity of phenol degraders isolated from phenol-grown aerobic granules: Phenol degradation kinetics and trichloroethylene co-metabolic activities.

    Science.gov (United States)

    Zhang, Yi; Tay, Joo Hwa

    2016-03-15

    Aerobic granule is a novel form of microbial aggregate capable of degrading toxic and recalcitrant substances. Aerobic granules have been formed on phenol as the growth substrate, and used to co-metabolically degrade trichloroethylene (TCE), a synthetic solvent not supporting aerobic microbial growth. Granule formation process, rate limiting factors and the comprehensive toxic effects of phenol and TCE had been systematically studied. To further explore their potential at the level of microbial population and functions, phenol degraders were isolated and purified from mature granules in this study. Phenol and TCE degradation kinetics of 15 strains were determined, together with their TCE transformation capacities and other physiological characteristics. Isolation in the presence of phenol and TCE exerted stress on microbial populations, but the procedure was able to preserve their diversity. Wide variation was found with the isolates' kinetic behaviors, with the parameters often spanning 3 orders of magnitude. Haldane kinetics described phenol degradation well, and the isolates exhibited actual maximum phenol-dependent oxygen utilization rates of 9-449 mg DO g DW(-1) h(-1), in phenol concentration range of 4.8-406 mg L(-1). Both Michaelis-Menten and Haldane types were observed for TCE transformation, with the actual maximum rate of 1.04-21.1 mg TCE g DW(-1) h(-1) occurring between TCE concentrations of 0.42-4.90 mg L(-1). The TCE transformation capacities and growth yields on phenol ranged from 20-115 mg TCE g DW(-1) and 0.46-1.22 g DW g phenol(-1), respectively, resulting in TCE transformation yields of 10-70 mg TCE g phenol(-1). Contact angles of the isolates were between 34° and 82°, suggesting both hydrophobic and hydrophilic cell surface. The diversity in the isolates is a great advantage, as it enables granules to be versatile and adaptive under different operational conditions. PMID:26720328

  18. Effect of Elevated Salt Concentrations on the Aerobic Granular Sludge Process: Linking Microbial Activity with Microbial Community Structure

    NARCIS (Netherlands)

    Bassin, J.P.; Pronk, M.; Muyzer, G.; Kleerebezem, R.; Dezotti, M.; Van Loosdrecht, M.C.M.

    2011-01-01

    The long- and short-term effects of salt on biological nitrogen and phosphorus removal processes were studied in an aerobic granular sludge reactor. The microbial community structure was investigated by PCR-denaturing gradient gel electrophoresis (DGGE) on 16S rRNA and amoA genes. PCR products obtai

  19. Degradation of municipal solid waste in simulated landfill bioreactors under aerobic conditions.

    Science.gov (United States)

    Slezak, Radoslaw; Krzystek, Liliana; Ledakowicz, Stanislaw

    2015-09-01

    In this study the municipal solid waste degradation processes in simulated landfill bioreactors under aerobic and anaerobic conditions is investigated. The effect of waste aeration on the dynamics of the aerobic degradation processes in lysimeters as well as during anaerobic processes after completion of aeration is presented. The results are compared with the anaerobic degradation process to determine the stabilization stage of waste in both experimental modes. The experiments in aerobic lysimeters were carried out at small aeration rate (4.41⋅10(-3)lmin(-1)kg(-1)) and for two recirculation rates (24.9 and 1.58lm(-3)d(-1)). The change of leachate and formed gases composition showed that the application of even a small aeration rate favored the degradation of organic matter. The amount of CO2 and CH4 released from anaerobic lysimeter was about 5 times lower than that from the aerobic lysimeters. Better stabilization of the waste was obtained in the aerobic lysimeter with small recirculation, from which the amount of CO2 produced was larger by about 19% in comparison with that from the aerobic lysimeter with large leachate recirculation.

  20. Variability of Biological Degradation of Aromatic Hydrocarbons in an Aerobic Aquifer Determined by Laboratory Batch Experiments

    DEFF Research Database (Denmark)

    Nielsen, Per Henning; Christensen, Thomas Højlund

    1994-01-01

    The biological aerobic degradation of 7 aromatic hydrocarbons (benzene, toluene, o-xylene, p-dichlorobenzene, o-dichlorobenzene, naphthalene and biphenyl) was studied for 149 days in replicate laboratory batch experiments with groundwater and sediment from 8 localities representing a 15 m × 30 m...... section of an aerobic aquifer. Compared to biologically deactivated control experiments all compounds were biologically degraded. Degradation curves were very reproducible for some compounds (benzene, toluene, o-xylene, o-dichlorobenzene and p-dichlorobenzene) and less reproducible for other (naphthalene...... and biphenyl). Based on observed length of lag phases, length of the degradation periods and percent degradation, the variation among the 8 localities appears to be modest. However, detailed examination of the degradation rates revealed statistically significant variation among localities for benzene, toluene...

  1. Isolation and Characteristics of a Microbial Consortium for Effectively Degrading Phenanthrene

    Institute of Scientific and Technical Information of China (English)

    Wang Jing; Xu Hongke; Guo Shaohui

    2007-01-01

    A microbial consortium (named W4) capable of aerobic biodegradation of solid phenanthrene as the sole source of carbon and energy was isolated by selective enrichment from petroleum-contaminated soil in the Henan oilfield,China. The strains of the consortium were identified as Sphingomonas cloacae, Rhizobium sp., Pseudomonas aeruginosa and Achromobacter xylosoxidans respectively by means of genetic methods. The major metabolites of phenanthrene were analyzed by gas chromatography-mass spectrometry (GC-MS). The biodegradation percentage of solid phenanthrene at 200 mg/L in liquid medium after 7 days of growth was greater than 99%. The degradation of phenanthrene was compared between individual predominant strains and the microbial consortium in different treatment processes. The microbial consortium showed a significant improvement of phenanthrene degradation rates in either static or shaking culture. The degradation percentage of phenanthrene by the consortium W4 decreased to some degree when C 16 coexisted, however it was hardly affected by C30. Furthermore, the ability of consortium W4 to remediate oil sludge from the Dagang oil refinery was studied by composting; and it was found that the consortium W4 could obviously remove polycyclic aromatic hydrocarbons (PAHs) and paraffinic hydrocarbons. All the results indicated that the microbial consortium W4 had a promising application in bioremediation of oil-contaminated environments and could be potentially used in microbial enhanced oil recovery (MEOR).

  2. Microbial transformation and degradation of polychlorinated biphenyls

    International Nuclear Information System (INIS)

    This paper reviews the potential of microorganisms to transform polychlorinated biphenyls (PCBs). In anaerobic environments, higher chlorinated biphenyls can undergo reductive dehalogenation. Meta- and para-chlorines in PCB congeners are more susceptible to dechlorination than ortho-chlorines. Anaerobes catalyzing PCB dechlorination have not been isolated in pure culture but there is strong evidence from enrichment cultures that some Dehalococcoides spp. and other microorganisms within the Chloroflexi phylum can grow by linking the oxidation of H2 to the reductive dechlorination of PCBs. Lower chlorinated biphenyls can be co-metabolized aerobically. Some aerobes can also grow by utilizing PCB congeners containing only one or two chlorines as sole carbon/energy source. An example is the growth of Burkholderia cepacia by transformation of 4-chlorobiphenyl to chlorobenzoates. The latter compounds are susceptible to aerobic mineralization. Higher chlorinated biphenyls therefore are potentially fully biodegradable in a sequence of reductive dechlorination followed by aerobic mineralization of the lower chlorinated products. - Higher chlorinated biphenyls are potentially fully biodegradable in a sequence of anaerobic reductive dechlorination followed by aerobic mineralization of the lower chlorinated products

  3. Limitations of microbial hydrocarbon degradation at the Amon Mud Volcano (Nile Deep Sea Fan

    Directory of Open Access Journals (Sweden)

    J. Felden

    2013-01-01

    Full Text Available The Amon mud volcano (MV, located at 1250 m water depth on the Nile Deep Sea Fan, is known for its active emission of methane and non-methane hydrocarbons into the hydrosphere. Previous investigations showed a low efficiency of hydrocarbon-degrading anaerobic microbial communities inhabiting the Amon MV center in the presence of sulphate and hydrocarbons in the seeping subsurface fluids. By comparing spatial and temporal patterns of in situ biogeochemical fluxes, temperature gradients, pore water composition and microbial activities over three years, we investigated why the activity of anaerobic hydrocarbon degraders can be low despite high energy supplies. We found that the central dome of the Amon MV, as well as a lateral mud flow at its base, showed signs of recent exposure of hot subsurface muds lacking active hydrocarbon degrading communities. In these highly disturbed areas, anaerobic degradation of methane was less than 2% of the methane flux. Rather high oxygen consumption rates compared to low sulphide production suggest a faster development of more rapidly growing aerobic hydrocarbon degraders in highly disturbed areas. In contrast, the more stabilized muds surrounding the central gas and fluid conduits hosted active anaerobic hydrocarbon-degrading microbial communities. Furthermore, within three years, cell numbers and hydrocarbon degrading activity increased at the gas-seeping sites. The low microbial activity in the hydrocarbon-vented areas of Amon mud volcano is thus a consequence of kinetic limitations by heat and mud expulsion, whereas most of the outer mud volcano area is limited by hydrocarbon transport.

  4. Kinetics and characteristics of phenanthrene degradation by a microbial consortium

    Institute of Scientific and Technical Information of China (English)

    Wang Jin; Xu Hongke; An Mingquan; Yan Guiwen

    2008-01-01

    The kinetics and characteristics of phenanthrene degradation by a microbial consortium W4 isolated from Henan Oilfield were investigated. The degradation percentage of solid phenanthrene at 200 mg/L in liquid medium after 6 days of incubation was higher than 95% under the condition of 37 ℃ and 120 r/min by this microbial consortium. The degradation of phenanthrene could be fitted to a first-order kinetic model with the half-life of 1.25 days. The optimum conditions for degradation of phenanthrene by consortium W4 were as follows: temperature about 37 ℃, pH from 6.0 to 7.0 and salinity about 8.0 g/L.It was concluded that microbial consortium W4 might degrade phenanthrene via both salicylic acid and o-phthalic acid pathways by analyzing products with GC-MS.

  5. Influence of microbial community structure of seed sludge on the properties of aerobic nitrifying granules.

    Science.gov (United States)

    Song, Zhiwei; Li, Ting; Wang, Qiuxu; Pan, Yu; Li, Lixin

    2015-09-01

    In order to evaluate the influence of microbial community structure of seed sludge on the properties of aerobic nitrifying granules, these granules were cultivated with different seed sludge, and the variation of microbial community and dominant bacterial groups that impact the nitrogen removal efficiency of the aerobic nitrifying granules were analyzed and identified using 16s rDNA sequence and denaturing gradient gel electrophoresis (DGGE) profiles. The results presented here demonstrated that the influence of the community structure of seed sludge on the properties of aerobic nitrifying granules was remarkable, and the granules cultivated by activated sludge from a beer wastewater treatment plant showed better performance, with a stable sludge volume index (SVI) value of 20mL/g, high extracellular polymeric substance (EPS) content of 183.3mg/L, high NH4(+)-N removal rate of 89.42% and abundant microbial population with 10 dominant bacterial groups. This indicated that activated sludge with abundant communities is suitable for use as seed sludge in culturing aerobic nitrifying granules. PMID:26354703

  6. Aerobic biofilters with small synthetic grains for demostric wastewater treatment: kinetics, efficiency and microbial deviersity

    Energy Technology Data Exchange (ETDEWEB)

    Nacheva, M.; Moeller-Chavez, G.; Hornelas-Orozco, Y.; Bustos, C.

    2009-07-01

    The aerobic biofilters with submerged packaed bed are able to retain a large biomass quantity, which makes them compact and suitable for samll wastewater treatment plants. The characteristics of the packed bed determine the structure of the formed biofilms, the operation mode and the effectiveness. The objective of this work was to compare the biofilm kinetics and the microbial diversity in three aerobic biofilters packed with grains 3.0-4.5 mm) made of high and of low density polyethylene (HDPE and LDPE), and of polypropyline (PP). The experimental work was carried out using three 20 L reactors, operated in downflow mode. (Author)

  7. Anaerobic-Aerobic Process for Microbial Degradation of Tetrabromobisphenol A

    OpenAIRE

    Ronen, Zeev; Abeliovich, Aharon

    2000-01-01

    Tetrabromobisphenol A (TBBPA) is a flame retardant that is used as an additive during manufacturing of plastic polymers and electronic circuit boards. Little is known about the fate of this compound in the environment. In the current study we investigated biodegradation of TBBPA, as well as 2,4,6-tribromophenol (TBP), in slurry of anaerobic sediment from a wet ephemeral desert stream bed contaminated with chemical industry waste. Anaerobic incubation of the sediment with TBBPA and peptone-try...

  8. Degradation of the herbicide mecoprop in an aerobic aquifer determined by laboratory batch studies

    DEFF Research Database (Denmark)

    Heron, Gorm; Christensen, Thomas Højlund

    1992-01-01

    The potential of a shallow aerobic aquifer to degrade the herbicide Mecoprop (2-(2-methyl-4-chlorophenoxy)propionic acid) was evaluated in the laboratory using groundwater and sediment suspension batches. Mecoprop was added to the batches to obtain concentrations of 65, 140, 400 and 1400 μg...

  9. Variability of Biological Degradation of Phenolic Hydrocarbons in an Aerobic Aquifer Determined by Laboratory Batch Experiments

    DEFF Research Database (Denmark)

    Nielsen, Per Henning; Christensen, Thomas Højlund

    1994-01-01

    and groundwater from 8 localities representing a 15 m × 30 m section of an aerobic aquifer. Three patterns of variation were found: (1) phenol, o-cresol and in most cases p-nitrophenol showed very fast degradation with no or only short lag phases and with very little variation among localities; (2) 2......,4-dichlorophenol was degraded in all localities and showed large variability among localities with respect to lag phases (0–50 days) and some variation with respect to degradation periods (20–40 days); and (3) nitrobenzene, o-nitrophenol, 2,6-dichlorophenol and 4,6-o-dichlorocresol showed very large variability...... among localities ranging from no degradation within 149 days in some localities to degradation within 2 days in other localities. The degradation patterns were highly sequential, indicating a general sequence, for those compounds degradable, valid in all localities. The results are of importance...

  10. Microbial degradation of chloroethenes in groundwater systems

    Science.gov (United States)

    Bradley, Paul M.

    The chloroethenes, tetrachloroethene (PCE) and trichloroethene (TCE) are among the most common contaminants detected in groundwater systems. As recently as 1980, the consensus was that chloroethene compounds were not significantly biodegradable in groundwater. Consequently, efforts to remediate chloroethene-contaminated groundwater were limited to largely unsuccessful pump-and-treat attempts. Subsequent investigation revealed that under reducing conditions, aquifer microorganisms can reductively dechlorinate PCE and TCE to the less chlorinated daughter products dichloroethene (DCE) and vinyl chloride (VC). Although recent laboratory studies conducted with halorespiring microorganisms suggest that complete reduction to ethene is possible, in the majority of groundwater systems reductive dechlorination apparently stops at DCE or VC. However, recent investigations conducted with aquifer and stream-bed sediments have demonstrated that microbial oxidation of these reduced daughter products can be significant under anaerobic redox conditions. The combination of reductive dechlorination of PCE and TCE under anaerobic conditions followed by anaerobic microbial oxidation of DCE and VC provides a possible microbial pathway for complete degradation of chloroethene contaminants in groundwater systems. Résumé Les chloroéthanes, tétrachloroéthane (PCE) et trichloroéthane (TCE) sont parmi les polluants les plus communs trouvés dans les aquifères. Depuis les années 1980, on considère que les chloroéthanes ne sont pas significativement biodégradables dans les aquifères. Par conséquent, les efforts pour dépolluer les nappes contaminées par des chloroéthanes se sont limités à des tentatives de pompage-traitement globalement sans succès. Des travaux ultérieurs ont montré que dans des conditions réductrices, des micro-organismes présents dans les aquifères peuvent, par réduction, dégrader les PCE et TCE en composés moins chlorés, comme le dichlor

  11. Microbial PAH-Degradation in Soil: Degradation Pathways and Contributing Factors

    Institute of Scientific and Technical Information of China (English)

    ZHANG Xu-Xiang; CHENG Shu-Pei; ZHU Cheng-Jun; SUN Shi-Lei

    2006-01-01

    Adverse effects on the environment and high persistence in the microbial degradation and environmental fate of polycyclic aromatic hydrocarbons (PAHs) are motivating interest. Many soil microorganisms can degrade PAHs and use various metabolic pathways to do so. However, both the physio-chemical characteristics of compounds as well as the physical, chemical, and biological properties of soils can drastically influence the degradation capacity of naturally occurring microorganisms for field bioremediation. Modern biological techniques have been widely used to promote the efficiency of microbial PAH-degradation and make the biodegradation metabolic pathways more clear. In this review microbial degradation of PAHs in soil is discussed, with emphasis placed on the main degradation pathways and the environmental factors affecting biodegradation.

  12. Selecting anti-microbial treatment of aerobic vaginitis.

    Science.gov (United States)

    Donders, Gilbert G G; Ruban, Katerina; Bellen, Gert

    2015-05-01

    Aerobic vaginitis (AV) is a vaginal infectious condition which is often confused with bacterial vaginosis (BV) or with the intermediate microflora as diagnosed by Nugent's method to detect BV on Gram-stained specimens. However, although both conditions reflect a state of lactobacillary disruption in the vagina, leading to an increase in pH, BV and AV differ profoundly. While BV is a noninflammatory condition composed of a multiplex array of different anaerobic bacteria in high quantities, AV is rather sparely populated by one or two enteric commensal flora bacteria, like Streptococcus agalactiae, Staphylocuccus aureus, or Escherichia coli. AV is typically marked by either an increased inflammatory response or by prominent signs of epithelial atrophy or both. The latter condition, if severe, is also called desquamative inflammatory vaginitis. As AV is per exclusionem diagnosed by wet mount microscopy, it is a mistake to treat just vaginal culture results. Vaginal cultures only serve as follow-up data in clinical research projects and are at most used in clinical practice to confirm the diagnosis or exclude Candida infection. AV requires treatment based on microscopy findings and a combined local treatment with any of the following which may yield the best results: antibiotic (infectious component), steroids (inflammatory component), and/or estrogen (atrophy component). In cases with Candida present on microscopy or culture, antifungals must be tried first in order to see if other treatment is still needed. Vaginal rinsing with povidone iodine can provide rapid relief of symptoms but does not provide long-term reduction of bacterial loads. Local antibiotics most suitable are preferably non-absorbed and broad spectrum, especially those covering enteric gram-positive and gram-negative aerobes, like kanamycin. To achieve rapid and short-term improvement of severe symptoms, oral therapy with amoxyclav or moxifloxacin can be used, especially in deep dermal vulvitis and

  13. Organic micropollutants in aerobic and anaerobic membrane bioreactors: Changes in microbial communities and gene expression

    KAUST Repository

    Harb, Moustapha

    2016-07-09

    Organic micro-pollutants (OMPs) are contaminants of emerging concern in wastewater treatment due to the risk of their proliferation into the environment, but their impact on the biological treatment process is not well understood. The purpose of this study is to examine the effects of the presence of OMPs on the core microbial populations of wastewater treatment. Two nanofiltration-coupled membrane bioreactors (aerobic and anaerobic) were subjected to the same operating conditions while treating synthetic municipal wastewater spiked with OMPs. Microbial community dynamics, gene expression levels, and antibiotic resistance genes were analyzed using molecular-based approaches. Results showed that presence of OMPs in the wastewater feed had a clear effect on keystone bacterial populations in both the aerobic and anaerobic sludge while also significantly impacting biodegradation-associated gene expression levels. Finally, multiple antibiotic-type OMPs were found to have higher removal rates in the anaerobic MBR, while associated antibiotic resistance genes were lower.

  14. Organic micropollutants in aerobic and anaerobic membrane bioreactors: Changes in microbial communities and gene expression.

    Science.gov (United States)

    Harb, Moustapha; Wei, Chun-Hai; Wang, Nan; Amy, Gary; Hong, Pei-Ying

    2016-10-01

    Organic micro-pollutants (OMPs) are contaminants of emerging concern in wastewater treatment due to the risk of their proliferation into the environment, but their impact on the biological treatment process is not well understood. The purpose of this study is to examine the effects of the presence of OMPs on the core microbial populations of wastewater treatment. Two nanofiltration-coupled membrane bioreactors (aerobic and anaerobic) were subjected to the same operating conditions while treating synthetic municipal wastewater spiked with OMPs. Microbial community dynamics, gene expression levels, and antibiotic resistance genes were analyzed using molecular-based approaches. Results showed that presence of OMPs in the wastewater feed had a clear effect on keystone bacterial populations in both the aerobic and anaerobic sludge while also significantly impacting biodegradation-associated gene expression levels. Finally, multiple antibiotic-type OMPs were found to have higher removal rates in the anaerobic MBR, while associated antibiotic resistance genes were lower. PMID:27441825

  15. Chromium Isotope Behaviour During Aerobic Microbial Reduction Activities

    Science.gov (United States)

    Zhang, Q.; Amor, K.; Porcelli, D.; Thompson, I.

    2014-12-01

    Microbial activity is a very important, and possibly even the dominant, reduction mechanism for many metals in natural water systems. Isotope fractionations during microbial metal reduction can reflect one major mechanism in metal cycling in the environment, and isotopic signatures can be used to identify and quantify reduction processes during biogeochemical cycling in the present environment as well as in the past. There are many Cr (VI)-reducing bacteria that have been discovered and isolated from the environment, and Cr isotopes were found to be fractionated during microbial reduction processes. In this study, Cr reduction experiments have been undertaken to determine the conditions under which Cr is reduced and the corresponding isotope signals that are generated. The experiments have been done with a facultative bacteria Pseudomonas fluorescens LB 300, and several parameters that have potential impact on reduction mechanisms have been investigated. Electron donors are important for bacteria growth and metabolism. One factor that can control the rate of Cr reduction is the nature of the electron donor. The results show that using citrate as an electron donor can stimulate bacteria reduction activity to a large extent; the reduction rate is much higher (15.10 mgˑL-1hour-1) compared with experiments using glucose (6.65 mgˑL-1ˑhour-1), acetate (4.88 mgˑL-1hour-1) or propionate (4.85 mgˑL-1hour-1) as electron donors. Groups with higher electron donor concentrations have higher reduction rates. Chromium is toxic, and when increasing Cr concentrations in the medium, the bacteria reduction rate is also higher, which reflects bacteria adapting to the toxic environment. In the natural environment, under different pH conditions, bacteria may metabolise in different ways. In our experiments with pH, bacteria performed better in reducing Cr (VI) when pH = 8, and there are no significant differences between groups with pH = 4 or pH = 6. To investigate this further, Cr

  16. Dynamics of Microbial Community Structure of and Enhanced Biological Phosphorus Removal by Aerobic Granules Cultivated on Propionate or Acetate▿

    OpenAIRE

    Gonzalez-Gil, Graciela; Holliger, Christof

    2011-01-01

    Aerobic granules are dense microbial aggregates with the potential to replace floccular sludge for the treatment of wastewaters. In bubble-column sequencing batch reactors, distinct microbial populations dominated propionate- and acetate-cultivated aerobic granules after 50 days of reactor operation when only carbon removal was detected. Propionate granules were dominated by Zoogloea (40%), Acidovorax, and Thiothrix, whereas acetate granules were mainly dominated by Thiothrix (60%). Thereafte...

  17. EVALUATION OF A TWO-STAGE TREATMENT OF DOMESTIC SEWAGE WITH ANAEROBIC-AEROBIC MICROBIAL FILM

    Directory of Open Access Journals (Sweden)

    A.Mesdaghinia

    1986-08-01

    Full Text Available The objective of this research was to study the feasibility of a two stage continuous system employing anaerobic-aerobic microbial film for domestic wastewater treatment and the effect of iron on the behavior of sulfate reducing bacteria in anaerobic metabolism. A bench scale system with an anaerobic filter followed by aerobic fixed units used plastic media and was operated in up flow manner with hydraulic detention times of 6 hours, whereas the aerobic unit utilized diffused aeration. Raw domestic sewage was fed to the anaerobic unit, and the aerobic unit was fed with the anaerobic unit was fed with the anaerobic effluent. Although, the anaerobic filter did not show a considerable organic removal with domestic sex age it was improved when glucose was added to the influent to increase influent soluble COD. When glucose was added the anaerobic filter removed about 290 mg/1 of influent soluble COD. The aerobic unit produced an excellent effluent with COD, BOD5 and TSS concentrations of 37 mg/1, 9 mg/1 and 10 mg/l respectively. Overall, the system removed 95 percent of influent COD, 97 percent of influent BOD5 and 96 percent of influent TSS.

  18. Kinetic Modelling of Pesticidal Degradation and Microbial Growth in Soil

    Institute of Scientific and Technical Information of China (English)

    LIUDUO-SEN; WANGZONG-SHENG; 等

    1994-01-01

    This paper discusses such models for the degradation kinetics of pesticides in soil as the model expressing the degradation rate as a function of two varables:the pesticide concentration and the number of pesticide degrading microorganisms,the model expressing the pesticide concentration as explicit or implicit function of time ,and the model exprssing the pesticide loss rate constants as functions of temperature,These models may interpret the degradation curves with an inflection point.A Kinetic model describing the growth processes of microbial populations in a closed system is reported as well.

  19. Degradation of 1-(2-chlorobenzoyl)-3-(4-chlorophenyl) urea by nanoscale zerovalent iron under aerobic and anaerobic conditions.

    Science.gov (United States)

    Lin, Haiying; Hou, Shaogang; Xie, Guohong; Yao, Ziwei; Zhou, Qingxiang

    2012-01-01

    The goal of present study was to investigate the applicability of nanoscale zerovalent iron (NZVI) on the degradation of 1-(2-chlorobenzoyl)-3-(4-chlorophenyl) urea (CCU) under aerobic and anaerobic conditions, respectively. The experimental results showed that NZVI could effectively degrade CCU, but the removal efficiencies were different under these two different conditions. The best removal efficiencies for CCU were 90.2 and 75.8% under aerobic and anaerobic conditions, respectively. The highly oxidative hydroxyl radicals and reductively hydrogen would account for the rapid degradation of CCU under aerobic and anaerobic conditions, respectively. The experimental results also showed that surfactant Tween 20 significantly inhibited the degradation of CCU under aerobic conditions. However it markedly enhanced the degradation of CCU under anaerobic condition.

  20. Microbial assisted High Impact Polystyrene (HIPS) degradation.

    Science.gov (United States)

    Mohan, Arya J; Sekhar, Vini C; Bhaskar, Thallada; Nampoothiri, K Madhavan

    2016-08-01

    The efficacy of newly isolated Pseudomonas and Bacillus strains to degrade brominated High Impact Polystyrene (HIPS) was investigated. Viability of these cultures while using e-plastic as sole carbon source was validated through Triphenyl Tetrazolium Chloride (TTC). Four days incubation of HIPS emulsion with Bacillus spp. showed 94% reduction in turbidity and was 97% with Pseudomonas spp. Confirmation of degradation was concluded by HPLC, NMR, FTIR, TGA and weight loss analysis. NMR spectra of the degraded film revealed the formation of aliphatic carbon chain with bromine and its release. FTIR analysis of the samples showed a reduction in CH, CO and CN groups. Surface changes in the brominated HIPS film was visualized through SEM analysis. Degradation with Bacillus spp showed a weight loss of 23% (w/w) of HIPS film in 30days.

  1. Anaerobic microbial LCFA degradation in bioreactors

    OpenAIRE

    Sousa, D.Z.; Pereira, M.A.; Alves, J.I.; Smidt, Hauke; Stams, A.J.M.; Alves, M. M.

    2008-01-01

    This paper reviews recent results obtained on long-chain fatty acids (LCFA) anaerobic degradation. Two LCFA were used as model substrates: oleate, a mono-unsaturated LCFA, and palmitate, a saturated LCFA, both abundant in LCFA-rich wastewaters. 16S rRNA gene analysis of sludge samples submitted to continuous oleate- and palmitate-feeding followed by batch degradation of the accumulated LCFA demonstrated that bacterial communities were dominated by members of the Clostridiaceae and Sy...

  2. Recent studies in microbial degradation of petroleum hydrocarbons in hypersaline environments

    Directory of Open Access Journals (Sweden)

    Babu Zhereppa Fathepure

    2014-04-01

    Full Text Available Many hypersaline environments are often contaminated with petroleum compounds. Among these, oil and natural gas production sites all over the world and hundreds of kilometers of coastlines in the more arid regions of Gulf countries are of major concern due to the extent and magnitude of contamination. Because conventional microbiological processes do not function well at elevated salinities, bioremediation of hypersaline environments can only be accomplished using high salt-tolerant microorganisms capable of degrading petroleum compounds. In the last two decades, there have been many reports on the biodegradation of hydrocarbons in moderate to high salinity environments. Numerous microorganisms belonging to the domain Bacteria and Archaea have been isolated and their phylogeny and metabolic capacity to degrade a variety of aliphatic and aromatic hydrocarbons in varying salinities have been demonstrated. This article focuses on our growing understanding of bacteria and archaea responsible for the degradation of hydrocarbons under aerobic conditions in moderate to high salinity conditions. Even though organisms belonging to various genera have been shown to degrade hydrocarbons, members of the genera Halomonas Alcanivorax, Marinobacter, Haloferax, Haloarcula, and Halobacterium dominate the published literature. Despite rapid advances in understanding microbial taxa that degrade hydrocarbons under aerobic conditions, not much is known about organisms that carry out similar processes in anaerobic conditions. Also, information on molecular mechanisms and pathways of hydrocarbon degradation in high salinity is scarce and only recently there have been a few reports describing genes, enzymes and breakdown steps for some hydrocarbons. These limited studies have clearly revealed that degradation of oxygenated and non-oxygenated hydrocarbons by halophilic and halotolerant microorganisms occur by pathways similar to those found in non-halophiles.

  3. Aerobic Microbial Community of Insectary Population of Phlebotomus papatasi.

    Directory of Open Access Journals (Sweden)

    Naseh Maleki-Ravasan

    2014-06-01

    Full Text Available Microbes particularly bacteria presenting in the gut of haematophagous insects may have an important role in the epidemiology of human infectious disease.The microbial flora of gut and surrounding environmental of a laboratory strain of Phlebotomus papatasi, the main vector of Zoonotic Cutaneous Leishmaniasis (ZCL in the old world, was investigated. Biochemical reactions and 16s rDNA sequencing of the isolated bacteria against 24 sugars and amino acids were used for bacteria species identification. Common mycological media used for fungi identification as well.Most isolates belonged to the Enterobacteriaceae, a large, heterogeneous group of gram-negative rods whose natural habitat is the intestinal tract of humans and animals. Enterobacteriaceae groups included Edwardsiella, Enterobacter, Escherichia, Klebsiella, Kluyvera, Leminorella, Pantoea, Proteus, Providencia, Rahnella, Serratia, Shigella, Tatumella, and Yersinia and non Enterobacteriaceae groups included Bacillus, Staphylococcus and Pseudomonas. The most prevalent isolates were Proteus mirabilis and P. vulgaris. These saprophytic and swarming motile bacteria were isolated from all immature, pupae, and mature fed or unfed male or female sand flies as well as from larval and adult food sources. Five fungi species were also isolated from sand flies, their food sources and colonization materials where Candida sp. was common in all mentioned sources.Midgut microbiota are increasingly seen as an important factor for modulating vector competence in insect vectors so their possible effects of the mirobiota on the biology of P. papatasi and their roles in the sandfly-Leishmania interaction are discussed.

  4. Microbial diversity differences within aerobic granular sludge and activated sludge flocs.

    Science.gov (United States)

    Winkler, M-K H; Kleerebezem, R; de Bruin, L M M; Verheijen, P J T; Abbas, B; Habermacher, J; van Loosdrecht, M C M

    2013-08-01

    In this study, we investigated during 400 days the microbial community variations as observed from 16S DNA gene DGGE banding patterns from an aerobic granular sludge pilot plant as well as the from a full-scale activated sludge treatment plant in Epe, the Netherlands. Both plants obtained the same wastewater and had the same relative hydraulic variations and run stable over time. For the total bacterial population, a similarity analysis was conducted showing that the community composition of both sludge types was very dissimilar. Despite this difference, general bacterial population of both systems had on average comparable species richness, entropy, and evenness, suggesting that different bacteria were sharing the same functionality. Moreover, multi-dimensional scaling analysis revealed that the microbial populations of the flocculent sludge system moved closely around the initial population, whereas the bacterial population in the aerobic granular sludge moved away from its initial population representing a permanent change. In addition, the ammonium-oxidizing community of both sludge systems was studied in detail showing more unevenness than the general bacterial community. Nitrosomonas was the dominant AOB in flocculent sludge, whereas in granular sludge, Nitrosomonas and Nitrosospira were present in equal amounts. A correlation analysis of process data and microbial data from DGGE gels showed that the microbial diversity shift in ammonium-oxidizing bacteria clearly correlated with fluctuations in temperature. PMID:23064482

  5. Dynamic Changes of Microbial Community for Degradation of Lignocellulose

    Institute of Scientific and Technical Information of China (English)

    LI Wenzhe; LIU Shuang; WANG Chunying; ZHENG Guoxiang

    2010-01-01

    Dynamic changes of a microbial community for lignocellulose degradation were explored in details.Community composition and development were investigated by the means of denaturing gradient gel electrophoresis(DGGE),and results showed that the microbial community was constituted of 14 kinds of bacteria and presented the fluctuation in some degrees with fermentation.Furthmore,the result of cluster analysis of DGGE pattern was accordant with growth curve,and the degradation process was divided into three stages: initial stage(0-12 h),intermediate stage(24-144 h)and end stage(144-216 h).

  6. Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics.

    Science.gov (United States)

    Kantor, Rose S; van Zyl, A Wynand; van Hille, Robert P; Thomas, Brian C; Harrison, Susan T L; Banfield, Jillian F

    2015-12-01

    Gold ore processing uses cyanide (CN(-) ), which often results in large volumes of thiocyanate- (SCN(-) ) contaminated wastewater requiring treatment. Microbial communities can degrade SCN(-) and CN(-) , but little is known about their membership and metabolic potential. Microbial-based remediation strategies will benefit from an ecological understanding of organisms involved in the breakdown of SCN(-) and CN(-) into sulfur, carbon and nitrogen compounds. We performed metagenomic analysis of samples from two laboratory-scale bioreactors used to study SCN(-) and CN(-) degradation. Community analysis revealed the dominance of Thiobacillus spp., whose genomes harbour a previously unreported operon for SCN(-) degradation. Genome-based metabolic predictions suggest that a large portion of each bioreactor community is autotrophic, relying not on molasses in reactor feed but using energy gained from oxidation of sulfur compounds produced during SCN(-) degradation. Heterotrophs, including a bacterium from a previously uncharacterized phylum, compose a smaller portion of the reactor community. Predation by phage and eukaryotes is predicted to affect community dynamics. Genes for ammonium oxidation and denitrification were detected, indicating the potential for nitrogen removal, as required for complete remediation of wastewater. These findings suggest optimization strategies for reactor design, such as improved aerobic/anaerobic partitioning and elimination of organic carbon from reactor feed. PMID:26031303

  7. Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics.

    Science.gov (United States)

    Kantor, Rose S; van Zyl, A Wynand; van Hille, Robert P; Thomas, Brian C; Harrison, Susan T L; Banfield, Jillian F

    2015-12-01

    Gold ore processing uses cyanide (CN(-) ), which often results in large volumes of thiocyanate- (SCN(-) ) contaminated wastewater requiring treatment. Microbial communities can degrade SCN(-) and CN(-) , but little is known about their membership and metabolic potential. Microbial-based remediation strategies will benefit from an ecological understanding of organisms involved in the breakdown of SCN(-) and CN(-) into sulfur, carbon and nitrogen compounds. We performed metagenomic analysis of samples from two laboratory-scale bioreactors used to study SCN(-) and CN(-) degradation. Community analysis revealed the dominance of Thiobacillus spp., whose genomes harbour a previously unreported operon for SCN(-) degradation. Genome-based metabolic predictions suggest that a large portion of each bioreactor community is autotrophic, relying not on molasses in reactor feed but using energy gained from oxidation of sulfur compounds produced during SCN(-) degradation. Heterotrophs, including a bacterium from a previously uncharacterized phylum, compose a smaller portion of the reactor community. Predation by phage and eukaryotes is predicted to affect community dynamics. Genes for ammonium oxidation and denitrification were detected, indicating the potential for nitrogen removal, as required for complete remediation of wastewater. These findings suggest optimization strategies for reactor design, such as improved aerobic/anaerobic partitioning and elimination of organic carbon from reactor feed.

  8. Microbial degradation of MTBE in reactors

    DEFF Research Database (Denmark)

    Waul, Christopher Kevin; Arvin, Erik; Schmidt, Jens Ejbye

    2007-01-01

    findings were: membrane bioreactors and fluidized bed reactors had the highest volumetric removal rates of all reactors studied, in the order of 1 000 mg/(l d); competition for oxygen, nutrients and occupancy between MTBE degraders and oxidisers of co-contaminants such as, ammonium and the group of benzene......, toluene, ethylbenzene and xylenes, may reduce the removal rates of MTBE, or prevent its removal in reactors. With mathematical modelling, the long startup time required for some MTBE degrading reactors could be predicted. Long startup times of up to 200 days were due to the low maximum growth rate...... of the MTBE degraders, in the order of 0.1 d−1 or less, at 25 °C. However, despite this, high volumetric MTBE removal rates were found to be possible after the startup period when the biomass concentration reached a steady state....

  9. Subsurface microbial communities and degradative capacities during trichloroethylene bioremediation

    International Nuclear Information System (INIS)

    Subsurface amendments of air, methane, and nutrients were investigated for the in situ stimulation of trichloroethylene- degrading microorganisms at the US DOE Savannah River Integrated Demonstration. Amendments were injected into a lower horizontal well coupled with vacuum extraction from the vadose zone horizontal well. The amendments were sequenced to give increasingly more aggressive treatments. Microbial populations and degradative capacities were monitored in groundwaters samples bimonthly

  10. Stimulation of aerobic degradation of bentazone, mecoprop and dichlorprop by oxygen addition to aquifer sediment

    DEFF Research Database (Denmark)

    Levi, Suzi; Hybel, Anne-Marie; Bjerg, Poul Løgstrup;

    2014-01-01

    to the oxidation of organic matter and other reduced species such as Fe2+, S2- and Mn in sediment before the biodegradation of herbicides takes place. This study suggests that oxygen enhancement around a drinking water abstraction field could stimulate the bioremediation of diffuse source contamination. © 2013 .......In order to investigate aerobic degradation potential for the herbicides bentazone, mecoprop and dichlorprop, anaerobic groundwater samples from two monitoring and three drinking water wells near a drinking water abstraction field in Nybølle, Denmark, were screened for their degradation potential...

  11. Microbial degradation of propoxur in turfgrass soil.

    Science.gov (United States)

    Ou, L T; Nkedi-Kizza, P; Cisar, J L; Snyder, G H

    1992-10-01

    This study was conducted to determine the degradation rates in turfgrass soil over a 12-month period after a single field application of propoxur and to isolate microorganisms from the soil capable of degrading the insecticide. Soil samples were collected from a turfgrass experimental site near Fort Lauderdale, FL one week before the field application of propoxur, and over a 12-month period after the field application. Mineralization rates in surface (0-15 cm depth) and subsurface (15-30 cm depth) soil samples collected before the field application were low. Mineralization in surface and subsurface samples collected 1, 6 and 8 months after the field application was much higher than for corresponding samples collected before the field application. Mineralization in the subsurface samples collected 12 months after the field application had reverted back to the similar rate for the corresponding sample collected before field application. Half-life values (t1/2) for propoxur showed similar trends to the results of mineralization. After a single application of propoxur, degradation in turfgrass soil was enhanced. Such enhancement lasted less than 12 months for the subsurface, but more than 12 months for the surface. A strain of Arthrobacter sp. capable of degrading propoxur was isolated from the soil.

  12. Anaerobic microbial LCFA degradation in bioreactors

    NARCIS (Netherlands)

    Sousa, D.Z.; Pereira, M.A.; Alves, J.I.; Smidt, H.; Stams, A.J.M.; Alves, M.M.

    2008-01-01

    This paper reviews recent results obtained on long-chain fatty acids (LCFA) anaerobic degradation. Two LCFA were used as model substrates: oleate, a mono-unsaturated LCFA, and palmitate, a saturated LCFA, both abundant in LCFA-rich wastewaters. 16S rRNA gene analysis of sludge samples submitted to c

  13. Modeling Aerobic Carbon Source Degradation Processes using Titrimetric Data and Combined Respirometric-Titrimetric Data: Experimental Data and Model Structure

    DEFF Research Database (Denmark)

    Gernaey, Krist; Petersen, B.; Nopens, I.;

    2002-01-01

    Experimental data are presented that resulted from aerobic batch degradation experiments in activated sludge with simple carbon sources (acetate and dextrose) as substrates. Data collection was done using combined respirometric-titrimetric measurements. The respirometer consists of an open aerate...

  14. Organic contaminants in soil, desorption kinetics and microbial degradation

    NARCIS (Netherlands)

    Schlebaum, W.

    1999-01-01

    The availability of organic contaminants in soils or sediments for microbial degradation or removal by physical means (e.g.) soil washing or soil venting) depends on the desorption kinetics of these contaminants from the soil matrix. When the organic contaminants desorb very slow from the soil matri

  15. Augmentation of a Microbial Consortium for Enhanced Polylactide (PLA) Degradation.

    Science.gov (United States)

    Nair, Nimisha R; Sekhar, Vini C; Nampoothiri, K Madhavan

    2016-03-01

    Bioplastics are eco-friendly and derived from renewable biomass sources. Innovation in recycling methods will tackle some of the critical issues facing the acceptance of bioplastics. Polylactic acid (PLA) is the commonly used and well-studied bioplastic that is presumed to be biodegradable. Considering their demand and use in near future, exploration for microbes capable of bioplastic degradation has high potential. Four PLA degrading strains were isolated and identified as Penicillium chrysogenum, Cladosporium sphaerospermum, Serratia marcescens and Rhodotorula mucilaginosa. A consortium of above strains degraded 44 % (w/w) PLA in 30 days time in laboratory conditions. Subsequently, the microbial consortium employed effectively for PLA composting. PMID:26843697

  16. Enhanced degradation of 14C-HCB in two tropical clay soils using multiple anaerobic–aerobic cycles

    International Nuclear Information System (INIS)

    The aim of the study was to induce and enhance the degradation of hexachlorobenzene (HCB), a highly-chlorinated persistent organic pollutant, in two ecologically different tropical soils: a paddy soil (PS) and a non-paddy soil (FS). The degradation of HCB was enhanced using two anaerobic–aerobic cycles in model laboratory experiments. There was greater degradation of HCB in the PS (half-life of 224 days) relative to the FS (half-life of 286 days). It was further shown that soils amended with compost had higher metabolite concentrations relative to the non-amended soils. In the first cycle, there was little degradation of HCB in both soils. However, in the second cycle, there was enhanced mineralization in the PS under aerobic conditions, with the compost-treated samples showing higher mineralization. There was also extensive volatilization in both soils. The metabolite pattern revealed that the increased mineralization and volatilization was due to the formation of lower chlorinated benzenes. - Highlights: ► Two anaerobic–aerobic cycles enhanced the dissipation of HCB in two tropical soils – a paddy and non-paddy soil. ► The paddy soil was more effective in degrading HCB. ► The non-paddy soil adapted and degraded HCB in the second anaerobic–aerobic cycle. ► An additional carbon source enhanced degradation and mineralisation of HCB in both soils. - Two anaerobic–aerobic cycles enhance the degradation of HCB in two ecologically different tropical clay soils.

  17. Microbial degradation of polyurethane, polyester polyurethanes and polyether polyurethanes.

    Science.gov (United States)

    Nakajima-Kambe, T; Shigeno-Akutsu, Y; Nomura, N; Onuma, F; Nakahara, T

    1999-02-01

    Polyurethane (PUR) is a polymer derived from the condensation of polyisocyanate and polyol and it is widely used as a base material in various industries. PUR, in particular, polyester PUR, is known to be vulnerable to microbial attack. Recently, environmental pollution by plastic wastes has become a serious issue and polyester PUR had attracted attention because of its biodegradability. There are many reports on the degradation of polyester PUR by microorganisms, especially by fungi. Microbial degradation of polyester PUR is thought to be mainly due to the hydrolysis of ester bonds by esterases. Recently, polyester-PUR-degrading enzymes have been purified and their characteristics reported. Among them, a solid-polyester-PUR-degrading enzyme (PUR esterase) derived from Comamonas acidovorans TB-35 had unique characteristics. This enzyme has a hydrophobic PUR-surface-binding domain and a catalytic domain, and the surface-binding domain was considered as being essential for PUR degradation. This hydrophobic surface-binding domain is also observed in other solid-polyester-degrading enzymes such as poly(hydroxyalkanoate) (PHA) depolymerases. There was no significant homology between the amino acid sequence of PUR esterase and that of PHA depolymerases, except in the hydrophobic surface-binding region. Thus, PUR esterase and PHA depolymerase are probably different in terms of their evolutionary origin and it is possible that PUR esterases come to be classified as a new solid-polyester-degrading enzyme family. PMID:10091317

  18. The microbial degradation of azo dyes: minireview.

    Science.gov (United States)

    Chengalroyen, M D; Dabbs, E R

    2013-03-01

    The removal of dyes in wastewater treatment plants still involves physical or chemical processes. Yet numerous studies currently exist on degradation based on the use of microbes-which is a well-studied field. However progress in the use of biological methods to deal with this environmentally noxious waste is currently lacking. This review focuses on the largest dye class, that is azo dyes and their biodegradation. We summarize the bacteria identified thus far which have been implicated in dye decolorization and discuss the enzymes involved and mechanisms by which these colorants are broken down.

  19. Microbial degradation of poly-beta-hydroxyalkanoates.

    Science.gov (United States)

    Mas-Castellà, J; Lafuente, R; Urmeneta, J; Goodwin, S; Guerrero, R

    1994-01-01

    The search for new materials that are not hazardous to the environment has become a major issue in our society, engaged as it is in the attainment of sustainable development. Poly-beta-hydroxyalkanoates (PHA), produced exclusively by prokaryotes, can be used as thermoplastics and are fully biodegradable and innocuous to the environment. Biodegradability testing has quantified the capacity of microorganisms to degrade such new chemical compounds, particularly polyhydroxyalkanoates. Standardized tests may also discover new microorganisms and environmental conditions that accelerate biodegradation. We evaluate various techniques used to assess the biodegradability of PHA, and which may also be applied to test other kinds of polymers.

  20. Microbial degradation and utilization of cassava peel.

    Science.gov (United States)

    Ofuya, C O; Nwajiuba, C J

    1990-06-01

    Cassava peel was readily degraded and utilized by a strain ofRhizopus growing in a solid-state fermentation. Growth was maximal at 45°C and was proportional to the degree of hydrolysis of the peel. The yield of biomass, as weight of dry mycellum from the reducing sugars of the peel, was 51%. After 72 h fermentation, the peel contained 76% moisture, 6% cellulose, 7% hemicellulose and 0.4% ash and the protein content had increased from 5.6% to 16%. These results suggest a possible economic value of cassava peel in the production of fungal biomass and feedstock.

  1. Physiology, biochemistry and possible applications of microbial caffeine degradation.

    Science.gov (United States)

    Gummadi, Sathyanarayana N; Bhavya, B; Ashok, Nandhini

    2012-01-01

    Caffeine, a purine alkaloid is a constituent of widely consumed beverages. The scientific evidence which has proved the harm of this alkaloid has paved the way for innumerable research in the area of caffeine degradation. In addition to this, the fact that the by-products of the coffee and tea industry pollute the environment has called for the need of decaffeinating coffee and tea industry's by-products. Though physical and chemical methods for decaffeination are available, the lack of specificity for removal of caffeine in these techniques and their non-eco-friendly nature has opened the area of microbial and enzymatic degradation of caffeine. Another important application of microbial caffeine degradation apart from its advantages like specificity, eco-friendliness and cost-effectiveness is the fact that this process will enable the production of industrially and medically useful components of the caffeine degradation pathway like theobromine and theophylline. This is a comprehensive review which mainly focuses on caffeine degradation, large-scale degradation of the same and its applications in the industrial world.

  2. Location and chemical composition of microbially induced phosphorus precipitates in anaerobic and aerobic granular sludge.

    Science.gov (United States)

    Mañas, A; Spérandio, M; Decker, F; Biscans, B

    2012-01-01

    This work focuses on combined scanning electron microscopy and energy dispersive X-ray analysis (SEM-EDX) applied to granular sludge used for biological treatment of high-strength wastewater effluents. Mineral precipitation is shown to occur in the core of microbial granules under different operating conditions. Three dairy wastewater effluents, from three different upflow anaerobic sludge blanket (UASB) reactors and two aerobic granular sequenced batch reactors (GSBR) were evaluated. The relationship between the solid phase precipitation and the chemical composition of the wastewater was investigated with PHREEQC software (calculation of saturation indexes). Results showed that pH, Ca:P ratios and biological reactions played a major role in controlling the biomineralization phenomena. Thermodynamics calculations can be used to foresee the nature of bio-precipitates, but the location of the mineral concretions will need further investigation as it is certainly due to local microbial activity. PMID:23393959

  3. Aerobic microbial dolomite at the nanometer scale: Implications for the geologic record

    Science.gov (United States)

    Sánchez-Román, Mónica; Vasconcelos, Crisógono; Schmid, Thomas; Dittrich, Maria; McKenzie, Judith A.; Zenobi, Renato; Rivadeneyra, Maria A.

    2008-11-01

    Microbial experiments are the only proven approach to produceexperimental dolomite under Earth's surface conditions. Althoughmicrobial metabolisms are known to induce dolomite precipitationby favoring dolomite growth kinetics, the involvement of microbesin the dolomite nucleation process is poorly understood. Inparticular, the nucleation of microbially mediated dolomiteremains a matter for investigation because the metabolic diversityinvolved in this process has not been fully explored. Hereinwe demonstrate that Halomonas meridiana and Virgibacillus marismortui,two moderately halophilic aerobic bacteria, mediate primaryprecipitation of dolomite at low temperatures (25, 35 °C).This report emphasizes the biomineralogical implications fordolomite formation at the nanometer scale. We describe nucleationof dolomite on nanoglobules in intimate association with thebacterial cell surface. A combination of both laboratory cultureexperiments and natural samples reveals that these nanoglobulestructures may be: (1) the initial step for dolomite nucleation,(2) preserved in the geologic record, and (3) used as microbialtracers through time and/or as a proxy for ancient microbialdolomite, as well as other carbonate minerals.

  4. Acetate-fed aerobic granular sludge for the degradation of 4-chlorophenol

    International Nuclear Information System (INIS)

    Chlorinated phenols are considered a critical environmental problem, due to their extreme toxicity and their widespread use both in industrial and agricultural activities. In this study, aerobic granular sludge was initially developed into an acetate-fed Granulated Sequencing Batch Reactor (GSBR) and then used for the degradation of low chlorinated 4-mono-chlorophenol (4CP), with readily biodegradable sodium acetate (NaAc) as co-substrate. Influent 4CP concentration ranged between 0 and 50 mg/l, with a maximum volumetric organic loading rate of 0.20 kg4CP/m3 d (0.32 kgCOD-4CP/m3 d). Differences in granules shape and size were observed with 4CP dosed in the influent at different concentrations, and the effects of such toxic compound on acetate removal were evaluated, with both unacclimated and acclimated biomass. Aerobic granules grown on acetate as carbon source proved to be an interesting solution for the degradation of 4CP, showing good resistance to high 4CP concentrations in the influent even if unacclimated (short term effects). Moreover, the monitoring of intermediate products and the evaluation of chloride release due to 4CP degradation proved that acclimated granular sludge could completely remove 4CP (long term effects), with high specific removal rates.

  5. Photochemical and microbial degradation technologies to remove toxic chemicals

    International Nuclear Information System (INIS)

    An effort was made to apply photochemical degradation technology on biodegradation processes to increase the bioremediation potential of microbial actions. For this purpose, we have chosen Phanerochaete chrysosporium, a wood decaying white-rot fungus and a variety of chlorinated pesticides and aromatics as study materials. By using UV-irradiation and benomyl (a commonly used fungicide) as selection methods, a strain of UV-resistant P. chrysosporium was developed. This strain was found to be capable of rapidly degrading these chlorinated chemicals when they were incubated in N-deficient medium which received 1 hr/day of UV-irradiation. UV-irradiation either at 300 or 254 nm showed the beneficial effect of speeding up the rate of degradation on most of test chemicals with the exception of toxaphene and HCH (hexachlorocyclohexane). By adding fresh glucose to the medium it was possible to maintain high degradation capacity for several weeks

  6. Microbial deterioration and degradation of Polymeric materials

    Directory of Open Access Journals (Sweden)

    Krishna Mohan

    2010-12-01

    -bidi-theme-font:minor-bidi;}  Polymeric materials due to its structural versatility are widely used in aerospace applications, aviation and space industries. As they are potential source of carbon and energy for heterotrophic microorganisms including bacteria and fungi in several ways its biodegradation affect these industries. The information on degradability can provide fundamental information facilitating design and life-time analysis of materials. Literature survey shows that polymers which are susceptible to biofilm formation includes paints, adhesives, plastics, rubbers, sealants, FRPCMs, lubricating materials, fuels etc. Even though the understanding of polymer degradation has been advanced in recent years the subject is still inadequately addressed because of the lack of information available. The review focuses on polymer biodeterioration and biodegradation and its mechanisms, the types of microorganisms involved, the reactions of enzymes of importance in the biodegradation of polymers, consequences, of biodegradation, the factors involved in biodegradation of polymers and its prevention and the tests used to evaluate it.

  7. AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics.

    Science.gov (United States)

    Duarte, Márcia; Jauregui, Ruy; Vilchez-Vargas, Ramiro; Junca, Howard; Pieper, Dietmar H

    2014-01-01

    Understanding prokaryotic transformation of recalcitrant pollutants and the in-situ metabolic nets require the integration of massive amounts of biological data. Decades of biochemical studies together with novel next-generation sequencing data have exponentially increased information on aerobic aromatic degradation pathways. However, the majority of protein sequences in public databases have not been experimentally characterized and homology-based methods are still the most routinely used approach to assign protein function, allowing the propagation of misannotations. AromaDeg is a web-based resource targeting aerobic degradation of aromatics that comprises recently updated (September 2013) and manually curated databases constructed based on a phylogenomic approach. Grounded in phylogenetic analyses of protein sequences of key catabolic protein families and of proteins of documented function, AromaDeg allows query and data mining of novel genomic, metagenomic or metatranscriptomic data sets. Essentially, each query sequence that match a given protein family of AromaDeg is associated to a specific cluster of a given phylogenetic tree and further function annotation and/or substrate specificity may be inferred from the neighboring cluster members with experimentally validated function. This allows a detailed characterization of individual protein superfamilies as well as high-throughput functional classifications. Thus, AromaDeg addresses the deficiencies of homology-based protein function prediction, combining phylogenetic tree construction and integration of experimental data to obtain more accurate annotations of new biological data related to aerobic aromatic biodegradation pathways. We pursue in future the expansion of AromaDeg to other enzyme families involved in aromatic degradation and its regular update. Database URL: http://aromadeg.siona.helmholtz-hzi.de

  8. Physiological and phylogenetic characterization of a stable chlorate-reducing benzene-degrading microbial community

    NARCIS (Netherlands)

    Weelink, S.A.B.; Tan, N.C.G.; Broeke, ten H.; Doesburg, van W.C.J.; Langenhoff, A.A.M.; Gerritse, J.; Stams, A.J.M.

    2007-01-01

    stable anoxic enrichment culture was obtained that degraded benzene with chlorate as an electron acceptor. The benzene degradation rate was 1.65 mM benzene per day, which is similar to reported aerobic benzene degradation rates but 20¿1650 times higher than reported for anaerobic benzene degradation

  9. Study of 4-t-octylphenol degradation and microbial community in granular sludge

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    In this study, the authors have investigated the effects of various factors on both aerobic and anaerobic degradation of 4-t-octylphenol (4-t-OP) in granular sludge. In comparison, the aerobic degradation rate was much higher than that of anaerobic degradation. The optimal pH values for 4-t-OP degradation in granular sludge were 9 and 7 under aerobic and anaerobic conditions, respectively. And the degradation rate decreased with an increase in the initial 4-t-OP concentration. Addition of yeast extract or homologous compounds such as phenol also enhanced the 4-t-OP degradation, especially under the aerobic condition. To investigate the bacterial community in this study, the denaturing gradient gel electrophoresis (DGGE) method was applied, based on the primers, for the 16S rDNA V3 region of bacteria. γ-proteobacteria and bacillus were identified as the major species of sludge.

  10. Organic contaminants in soil, desorption kinetics and microbial degradation

    OpenAIRE

    Schlebaum, W.

    1999-01-01

    The availability of organic contaminants in soils or sediments for microbial degradation or removal by physical means (e.g.) soil washing or soil venting) depends on the desorption kinetics of these contaminants from the soil matrix. When the organic contaminants desorb very slow from the soil matrix, remediation of polluted sites may be hampered. In this thesis, sorption kinetics of organic contaminants in soil was investigated with emphasis on the influence of natural organic matter on slow...

  11. Soil microbial response to photo-degraded C60 fullerenes.

    Science.gov (United States)

    Berry, Timothy D; Clavijo, Andrea P; Zhao, Yingcan; Jafvert, Chad T; Turco, Ronald F; Filley, Timothy R

    2016-04-01

    Recent studies indicate that while unfunctionalized carbon nanomaterials (CNMs) exhibit very low decomposition rates in soils, even minor surface functionalization (e.g., as a result of photochemical weathering) may accelerate microbial decay. We present results from a C60 fullerene-soil incubation study designed to investigate the potential links between photochemical and microbial degradation of photo-irradiated C60. Irradiating aqueous (13)C-labeled C60 with solar-wavelength light resulted in a complex mixture of intermediate products with decreased aromaticity. Although addition of irradiated C60 to soil microcosms had little effect on net soil respiration, excess (13)C in the respired CO2 demonstrates that photo-irradiating C60 enhanced its degradation in soil, with ∼ 0.78% of 60 day photo-irradiated C60 mineralized. Community analysis by DGGE found that soil microbial community structure was altered and depended on the photo-treatment duration. These findings demonstrate how abiotic and biotic transformation processes can couple to influence degradation of CNMs in the natural environment. PMID:26774781

  12. Particulate organics degradation and sludge minimization in aerobic, complete SRT bioreactors.

    Science.gov (United States)

    Amanatidou, Elisavet; Samiotis, Georgios; Trikoilidou, Eleni; Tsikritzis, Lazaros

    2016-05-01

    The study evaluates the assumption that in activated sludge processes and under specific operating conditions, the considered unbiodegradable particulate organic fractions of influent (XU) organic solids and biomass decay residues (cell debris, XE) are degraded. The evaluation was performed by comparing sludge observed yield (Yobs) evolution in two full scale, complete solids retention time (SRT), aerobic bioreactors, to the predictions of two activated sludge models. The results showed that in steady state operating conditions of complete solids retention AS processes very low solids accumulation occur. In these conditions, solids accumulation is slightly affected by kinetic coefficients and significantly affected by XU and XE degradation rates. High endogenous residues degradation rate values of 0.05 d(-1) and 0.02 d(-1) were estimated for the two bioreactors, resulting in low solids accumulation, calculated at 1.6 tons and 3.59 tons per year respectively, of which 1.37 and 0.87 tons were non volatile suspended solids. Depending on WWTP operating conditions the endogenous residues degradation rate is the limiting factor of solids accumulation and consequently for particulate organics degradation.

  13. Particulate organics degradation and sludge minimization in aerobic, complete SRT bioreactors.

    Science.gov (United States)

    Amanatidou, Elisavet; Samiotis, Georgios; Trikoilidou, Eleni; Tsikritzis, Lazaros

    2016-05-01

    The study evaluates the assumption that in activated sludge processes and under specific operating conditions, the considered unbiodegradable particulate organic fractions of influent (XU) organic solids and biomass decay residues (cell debris, XE) are degraded. The evaluation was performed by comparing sludge observed yield (Yobs) evolution in two full scale, complete solids retention time (SRT), aerobic bioreactors, to the predictions of two activated sludge models. The results showed that in steady state operating conditions of complete solids retention AS processes very low solids accumulation occur. In these conditions, solids accumulation is slightly affected by kinetic coefficients and significantly affected by XU and XE degradation rates. High endogenous residues degradation rate values of 0.05 d(-1) and 0.02 d(-1) were estimated for the two bioreactors, resulting in low solids accumulation, calculated at 1.6 tons and 3.59 tons per year respectively, of which 1.37 and 0.87 tons were non volatile suspended solids. Depending on WWTP operating conditions the endogenous residues degradation rate is the limiting factor of solids accumulation and consequently for particulate organics degradation. PMID:26971804

  14. Cultivation and characters of aerobic granules for pentachlorophenol (PCP) degradation under microaerobic condition

    Institute of Scientific and Technical Information of China (English)

    LAN Hui-xia; CHEN Yuan-cai; CHEN Zhong-hao; CHEN Rong

    2005-01-01

    Cultivation of aerobic granular sludge for pentachlorophenol (PCP) degradation under microaerobic condition ( DO concentration was controlled at 0.2-0.7 mg/L) was studied in this paper. Anaerobic granules were selected as inoculum. The changes of appearance were observed and the variations of SVI, VSS/TSS, PN/PS and the size of sludge were measured during cultivating. The capabilities for degradation of PCP, AOX and CODcr were also studied. Observations on mature granules were carried out by scanning electron microscope, and the results indicated bacillus was dominant on the surface of granules while in the inner of granules both bacillus and coccus were the dominant microorganisms. K, Na, Fe, Ca, Mg, Ni, Co, Mn, Cu and Zn were detected in the granules by element analysis.

  15. Hydrolysis and degradation of filtrated organic particulates in a biofilm reactor under anoxic and aerobic conditions

    DEFF Research Database (Denmark)

    Janning, K.F.; Mesterton, K.; Harremoës, P.

    1997-01-01

    Two experiments were performed in order to investigate the anoxic and the aerobic degradation of filtrated organic matter in a biofilter. In submerged lab: scale reactors with Biocarbone media as filter material, accumulated particulate organic matter from pre-settled wastewater served as the only...... occurred. The maximum nitrate removal rate, with particulate organic matter as carbon source, was found to I g NO3-N/(.)(-)(m(2)d), declining exponentially as tau(ANO3-N) = 1.04 e(-4t) g NO3-N/(m(2)d) (t = days). A significant release of soluble organic matter (... carbon to the bulk liquid was observed as an indication of hydrolysis taking place. The second experiment was designed as a series of on-line OUR batch experiments in a biofilm reactor with recirculation, in order to investigate further the degradation of particulate organic matter. After the biofilm had...

  16. Microcosm experiments of oil degradation by microbial mats.

    Science.gov (United States)

    de Oteyza, Tirso García; Grimalt, Joan O; Llirós, Marc; Esteve, Isabel

    2006-03-15

    Several microcosm experiments were run in parallel to evaluate the efficiency of microbial mats for crude oil degradation as compared with physico-chemical weathering. The oils used in the experiments constituted representative examples of those currently used for commercial purposes. One was aliphatic and of low viscosity (33.4 American Petroleum Institute degrees, degrees API) and the other was predominantly aromatic, with high sulphur content (ca. 2.7%) and viscosity (16.6 degrees API). After crude oil introduction, the microcosms were kept under cyclic changes in water level to mimic coastal tidal movements. The transformations observed showed that water weathering leads to more effective and rapid elimination of low molecular weight hydrocarbons than microbial mat metabolism, e.g. n-alkanes with chain length shorter than n-pentadecane or n-heptadecane, regular isoprenoid hydrocarbons with chain length lower than C16 or C18 or lower molecular weight naphthalenes. Microbial mats preserved these hydrocarbons from volatilization and water washing. However, hydrocarbons of lower volatility such as the C24-C30 n-alkanes or containing nitrogen atoms, e.g. carbazoles, were eliminated in higher proportion by microbial mats than by water weathering. The strong differences in composition between the two oils used for the experiments were also reflected in significant differences between water weathering and microbial mat biodegradation. Higher oil viscosity seemed to hinder the former but not the later. PMID:15935450

  17. Molecular characterization of a microbial consortium involved in methane oxidation coupled to denitrification under micro-aerobic conditions

    OpenAIRE

    Liu, Jingjing; Sun, Faqian; Wang, Liang; Ju, Xi; Wu, Weixiang; Chen, Yingxu

    2013-01-01

    Methane can be used as an alternative carbon source in biological denitrification because it is nontoxic, widely available and relatively inexpensive. A microbial consortium involved in methane oxidation coupled to denitrification (MOD) was enriched with nitrite and nitrate as electron acceptors under micro-aerobic conditions. The 16S rRNA gene combined with pmoA phylogeny of methanotrophs and nirK phylogeny of denitrifiers were analysed to reveal the dominant microbial populations and functi...

  18. Physicochemical and Microbial Caracteristics Performency in Wastewater Treated Under Aerobic Reactor

    Directory of Open Access Journals (Sweden)

    Asma B. Rajeb

    2011-01-01

    Full Text Available Problem statement: The current work study the efficiency of biological wastewater treatment by an aerobic reactor which could be used in small agglomerations. RBC reduced physicochemical and microbiological load of wastewater but values remain above Tunisian standard. Approach: Experiments were conducted on a sand filled PVC column fed with wastewater treated by Rotating Biological Contactor (RBC at a pulsed rhythm of 8 sequences per day. For performances study process, physicochemical and bacterial analyses effluent at inlet and outlet of column were realized. Results: The results showed that through filter mass (D10 = 0.55 mm, D60 = 1.3 mm and coefficient uniformity = 2.36 96% of suspended solids, 99% of NH4 +-N (during first phase, 92% of COD, 91% of BOD5 and 46% of phosphorus are retained by surface filtration. The microbial abatement results is E. coli. The microbial water quality is slightly higher than Tunisian standards. The removal of microbial indicators in the considered reactor depends on the depth of the filter and negatively correlated with NO3 --N (r = -0.99, with E. coli at 3rd OPD. Conclusion/Recommendation: Results confirmed that the reactor tested is performed as an advanced treatment system for DBO, COD, SS, NH4 +-N and NO3 --N. Despite that 96% of SS efficiency reduction, clogging is not achieved quickly that due to biofilm detachment phenomena. The removal of microbial indicators in the considered reactor depends on the depth of the filter and negatively correlated with NO3 --N. Disinfection performances for the considered reactor reduce microbial load, however chlore, ozone or UV disinfection should be considered.

  19. Microbial degradation of low-level radioactive waste. Final report

    International Nuclear Information System (INIS)

    The Nuclear Regulatory Commission stipulates in 10 CFR 61 that disposed low-level radioactive waste (LLW) be stabilized. To provide guidance to disposal vendors and nuclear station waste generators for implementing those requirements, the NRC developed the Technical Position on Waste Form, Revision 1. That document details a specified set of recommended testing procedures and criteria, including several tests for determining the biodegradation properties of waste forms. Information has been presented by a number of researchers, which indicated that those tests may be inappropriate for examining microbial degradation of cement-solidified LLW. Cement has been widely used to solidify LLW; however, the resulting waste forms are sometimes susceptible to failure due to the actions of waste constituents, stress, and environment. The purpose of this research program was to develop modified microbial degradation test procedures that would be more appropriate than the existing procedures for evaluation of the effects of microbiologically influenced chemical attack on cement-solidified LLW. The procedures that have been developed in this work are presented and discussed. Groups of microorganisms indigenous to LLW disposal sites were employed that can metabolically convert organic and inorganic substrates into organic and mineral acids. Such acids aggressively react with cement and can ultimately lead to structural failure. Results on the application of mechanisms inherent in microbially influenced degradation of cement-based material are the focus of this final report. Data-validated evidence of the potential for microbially influenced deterioration of cement-solidified LLW and subsequent release of radionuclides developed during this study are presented

  20. Microbial degradation of low-level radioactive waste

    International Nuclear Information System (INIS)

    The Nuclear Regulatory Commission stipulates that disposed low-level radioactive waste (LLW) be stabilized. Because of apparent ease of use and normal structural integrity, cement has been widely used as a binder to solidify LLW. However, the resulting waste forms are sometimes susceptible to failure due to the actions of waste constituents, stress, and environment. This report reviews laboratory efforts that are being developed to address the effects of microbiologically influenced chemical attack on cement-solidified LLW. Groups of microorganisms are being employed that are capable of metabolically converting organic and inorganic substrates into organic and mineral acids. Such acids aggressively react with cement and can ultimately lead to structural failure. Results on the application of mechanisms inherent in microbially influenced degradation of cement-based material are the focus of this report. Sufficient data-validated evidence of the potential for microbially influenced deterioration of cement-solidified LLW has been developed during the course of this study. These data support the continued development of appropriate tests necessary to determine the resistance of cement-solidified LLW to microbially induced degradation that could impact the stability of the waste form. They also justify the continued effort of enumeration of the conditions necessary to support the microbiological growth and population expansion

  1. Survey of microbial degradation of asphalts with notes on relationship to nuclear waste management

    International Nuclear Information System (INIS)

    A survey has been made of the microbial degradation of asphalts. Topics covered include chemical and physical properties of asphalts, their chemical stability, methods of demonstrating their microbial degradation, and environmental extremes for microbial activity based on existing literature. Specific concerns for the use of asphalt in nuclear waste management, plus potential effects and consequences thereof are discussed. 82 references

  2. The Effect of Microbial Inoculants Applied at Ensiling on Sorghum Silage Characteristics and Aerobic Stability

    Institute of Scientific and Technical Information of China (English)

    GUAN Wu-tai; Ashbell G; Hen Y; Weinberg Z G

    2002-01-01

    Whole crop forage sorghum (Saccharatum) cultivar FS5 was harvested at the soft dough stage of maturity. The sorghum was chopped to approximately 2 cm pieces and ensiled under laboratory conditions in 1.5 L Weck glass jars. At ensiling, it was treated with two commercial microbial inoculants: inoculant A and inoculant B. The inoculants were applied at 2 × 105 colony forming units g- 1 DM. Silage with no additives served as a control. Three jars per treatment were opened on days 2, 4, 8, 15 and 60 post-ensiling to study fermentation dynamics. After 60 days of ensiling, the silages were analyzed and subjected to an aerobic stability test lasting 5 days. Results showed that both inoculants caused a more rapid rate of pH decline and a higher amount of lactic acid production. Silages treated with each inoculant produced a little more CO2 and resulted in more glucose loss as compared with the control. Addition of inoculants did not influence ( P > 0.05) the ash and crude protein contents, but tended to decrease the concentration of acetic acid (P < 0.05), butyric acid (P < 0.01) and propionic acid ( P < 0.01 ), and increase the lactic acid concentration ( P < 0.01 ). Silages treated with inoculant A possess the more DM loss, and the higher yeast counts upon aerobic exposure. Silage treated with inoculant B had the most DM (P < 0.05), lactic acid contents (P < 0.01 ), the least acetic acid content (P < 0.05). Inoculant B reduced the ADF (P < 0.01), ADL and NDF ( P < 0.05) contents. It was concluded that lactic bacteria inoculants may improve the fermentation but might impair the aerobic stability for sorghum ensilage.

  3. Microbial and hydrodynamic properties of aerobic granules in a sequencing batch reactor treating landfill leachate

    Institute of Scientific and Technical Information of China (English)

    Yan-jie WEI; Min JI; Guo-yi LI; Fei-fei QIN

    2012-01-01

    A sequencing batch reactor (SBR) seeded with activated sludge was established for landfill leachate treatment.Small bio-aggregates began to appear after 40-d operation,and gradually changed to mature aerobic granules,with a mean size of 0.36-0.60 mm.Their sludge volume index at 5 min (SVI5 min),mixed liquor volatile suspended solids (MLVSS),and wet density were around 35 ml/g,3.4 g/L,and 1.062 g/cm3,respectively.The settling velocities of the granules in distilled water ranged from 0.3 to 1.3 cm/s,which were faster than those in landfill leachate with a salt content of 1.4% (w/v),and also slightly faster than those predicted by Stokes' law for porous but impermeable particles.Microbial community evolution during the granulation process and stages under different nitrogen loading rates (NLRs) were monitored and analyzed by polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE),cloning,and sequencing of 16S ribosomal RNA (rRNA) fragments.Results revealed that some primary and dominant communities in inoculating activated sludge died out gradually; while a few common bacteria,inhabiting soils,municipal wastewater,or activated sludge systems,dominated in the SBR system throughout.In addition,some other dominant species,associated with the aerobic granulation process,were thought to play a significant role in the formation and growth of aerobic granular sludge.During the stable operation time under low NLR,a few species were present in abundance,and may have been responsible for the high organic removal efficiency at this time.

  4. Biofuel components change the ecology of bacterial volatile petroleum hydrocarbon degradation in aerobic sandy soil

    International Nuclear Information System (INIS)

    We tested the hypothesis that the biodegradation of volatile petroleum hydrocarbons (VPHs) in aerobic sandy soil is affected by the blending with 10 percent ethanol (E10) or 20 percent biodiesel (B20). When inorganic nutrients were scarce, competition between biofuel and VPH degraders temporarily slowed monoaromatic hydrocarbon degradation. Ethanol had a bigger impact than biodiesel, reflecting the relative ease of ethanol compared to methyl ester biodegradation. Denaturing gradient gel electrophoresis (DGGE) of bacterial 16S rRNA genes revealed that each fuel mixture selected for a distinct bacterial community, each dominated by Pseudomonas spp. Despite lasting impacts on soil bacterial ecology, the overall effects on VHP biodegradation were minor, and average biomass yields were comparable between fuel types, ranging from 0.40 ± 0.16 to 0.51 ± 0.22 g of biomass carbon per gram of fuel carbon degraded. Inorganic nutrient availability had a greater impact on petroleum hydrocarbon biodegradation than fuel composition. Highlights: ► The effect of 10% ethanol or 20% biodiesel on the biodegradability of volatile petroleum hydrocarbons in soil was investigated. ► Competition for scarce inorganic nutrients between biofuel and VPH degraders slowed monoaromatic hydrocarbon degradation. ► Biofuel effects were transitional. ► Each fuel selected for a distinct predominant bacterial community. ► All bacterial communities were dominated by Pseudomonas spp. - Blending of petroleum with ethanol or biodiesel changes the fuel degrading soil bacterial community structure, but the long-term effects on fuel biodegradability are minor.

  5. Physiological and phylogenetic characterization of a stable benzene-degrading, chlorate-reducing microbial community

    NARCIS (Netherlands)

    Weelink, S.A.B.; Tan, N.C.G.; Broeke, H. ten; Doesburg, W. van; Langenhoff, A.A.M.; Gerritse, J.; Stams, A.J.M.

    2007-01-01

    A stable anoxic enrichment culture was obtained that degraded benzene with chlorate as an electron acceptor. The benzene degradation rate was 1.65 mM benzene per day, which is similar to reported aerobic benzene degradation rates but 20-1650 times higher than reported for anaerobic benzene degradati

  6. Treatment of colour industry wastewaters with concomitant bioelectricity production in a sequential stacked mono-chamber microbial fuel cells-aerobic system.

    Science.gov (United States)

    Fernando, Eustace; Keshavarz, Taj; Kyazze, Godfrey; Fonseka, Keerthi

    2016-01-01

    The scalability of any microbial fuel cell (MFC)-based system is of vital importance if it is to be utilized for potential field applications. In this study, an integrated MFC-aerobic bioreactor system was investigated for its scalability with the purpose of treating a simulated dye wastewater and industrial wastewaters originated from textile dyebaths and leather tanning. The influent containing real wastewater was fed into the reactor in continuous mode at ambient temperature. Three MFC units were integrated to act in unison as a single module for wastewater treatment and a continuously stirred aerobic bioreactor operating downstream to the MFC module was installed in order to ensure more complete degradation of colouring agents found in the wastewater. Total colour removal in the final effluent exceeded 90% in all experiments where both synthetic (AO-7 containing) and real wastewater were used as the influent feed. The chemical oxygen demand reduction also exceeded 80% in all experiments under the same conditions. The MFC modules connected in parallel configuration allowed obtaining higher current densities than that can be obtained from a single MFC unit. The maximum current density of the MFC stack reached 1150 mA m(-2) when connected in a parallel configuration. The outcome of this work implies that suitably up-scaled MFC-aerobic integrated bioprocesses could be used for colour industry wastewater treatment under industrially relevant conditions with possible prospects of bioelectricity generation. PMID:26212183

  7. Treatment of colour industry wastewaters with concomitant bioelectricity production in a sequential stacked mono-chamber microbial fuel cells-aerobic system.

    Science.gov (United States)

    Fernando, Eustace; Keshavarz, Taj; Kyazze, Godfrey; Fonseka, Keerthi

    2016-01-01

    The scalability of any microbial fuel cell (MFC)-based system is of vital importance if it is to be utilized for potential field applications. In this study, an integrated MFC-aerobic bioreactor system was investigated for its scalability with the purpose of treating a simulated dye wastewater and industrial wastewaters originated from textile dyebaths and leather tanning. The influent containing real wastewater was fed into the reactor in continuous mode at ambient temperature. Three MFC units were integrated to act in unison as a single module for wastewater treatment and a continuously stirred aerobic bioreactor operating downstream to the MFC module was installed in order to ensure more complete degradation of colouring agents found in the wastewater. Total colour removal in the final effluent exceeded 90% in all experiments where both synthetic (AO-7 containing) and real wastewater were used as the influent feed. The chemical oxygen demand reduction also exceeded 80% in all experiments under the same conditions. The MFC modules connected in parallel configuration allowed obtaining higher current densities than that can be obtained from a single MFC unit. The maximum current density of the MFC stack reached 1150 mA m(-2) when connected in a parallel configuration. The outcome of this work implies that suitably up-scaled MFC-aerobic integrated bioprocesses could be used for colour industry wastewater treatment under industrially relevant conditions with possible prospects of bioelectricity generation.

  8. Microbial activity and bacterial community structure during degradation of microcystins

    DEFF Research Database (Denmark)

    Christoffersen, K.; Lyck, Susanne; Winding, A.

    2002-01-01

    experiment to evaluate the effects of organic lysates on bacterial proliferation in the absence of microcystin. An exponential decline of the dissolved toxins was observed in all cases with toxins present, and the degradation rates ranged between 0.5 and 1.0 d(-1). No lag phases were observed but slow...... including microcystins, and this resulted in a net accumulation of bacterial cells. The heterotrophic nanoflagellates responded quickly to the bacterial growth and probably consumed a considerable amount of the bacteria. The microbial activities returned to initial values within 5 to 6 d as the toxins....... It was hypothesised that the bacterial community from a lake with frequent occurrence of toxic cyanobacteria can degrade microcystin along with other organic compounds. The initial dissolved microcystin concentrations ranged between 10 and 136 mug 1(-1) (microcystin-LR equivalents) in the laboratory experiment, using...

  9. Stimulation of aerobic degradation of bentazone, mecoprop and dichlorprop by oxygen addition to aquifer sediment

    International Nuclear Information System (INIS)

    In order to investigate aerobic degradation potential for the herbicides bentazone, mecoprop and dichlorprop, anaerobic groundwater samples from two monitoring and three drinking water wells near a drinking water abstraction field in Nybølle, Denmark, were screened for their degradation potential for the herbicides. In the presence of oxygen 14C-labelled bentazone and mecoprop were removed significantly from the two monitoring wells' groundwater samples. Oxygen was added to microcosms in order to investigate whether different oxygen concentrations stimulate the biodegradation of the three herbicides in microcosms using groundwater and sandy aquifer materials. To maintain a certain oxygen concentration this level was measured from the outside of the bottles with a fibre oxygen meter using oxygen-sensitive luminescent sensor foil mounted inside the microcosm, to which supplementary oxygen was added. The highest oxygen concentrations (corresponding to 4–11 mg L−1) stimulated degradation (a 14–27% increase for mecoprop, 3–9% for dichlorprop and 15–20% for bentazone) over an experimental period of 200 days. Oxygen was required to biodegrade the herbicides, since no degradation was observed under anaerobic conditions. This is the first time bentazone degradation has been observed in aquifer material at low oxygen concentrations (2 mg L−1). The sediment had substantial oxygen consumption (0.92–1.45 O2 g-1 dw over 200 days) and oxygen was depleted rapidly in most incubations soon after its addition, which might be due to the oxidation of organic matter and other reduced species such as Fe2+, S2− and Mn in sediment before the biodegradation of herbicides takes place. This study suggests that oxygen enhancement around a drinking water abstraction field could stimulate the bioremediation of diffuse source contamination. - Highlights: • Addition of different oxygen concentrations stimulated degradation of herbicides in anaerobic aquifer sediment material.

  10. Stimulation of aerobic degradation of bentazone, mecoprop and dichlorprop by oxygen addition to aquifer sediment

    Energy Technology Data Exchange (ETDEWEB)

    Levi, S.; Hybel, A.-M.; Bjerg, P.L.; Albrechtsen, H.-J., E-mail: hana@env.dtu.dk

    2014-03-01

    In order to investigate aerobic degradation potential for the herbicides bentazone, mecoprop and dichlorprop, anaerobic groundwater samples from two monitoring and three drinking water wells near a drinking water abstraction field in Nybølle, Denmark, were screened for their degradation potential for the herbicides. In the presence of oxygen {sup 14}C-labelled bentazone and mecoprop were removed significantly from the two monitoring wells' groundwater samples. Oxygen was added to microcosms in order to investigate whether different oxygen concentrations stimulate the biodegradation of the three herbicides in microcosms using groundwater and sandy aquifer materials. To maintain a certain oxygen concentration this level was measured from the outside of the bottles with a fibre oxygen meter using oxygen-sensitive luminescent sensor foil mounted inside the microcosm, to which supplementary oxygen was added. The highest oxygen concentrations (corresponding to 4–11 mg L{sup −1}) stimulated degradation (a 14–27% increase for mecoprop, 3–9% for dichlorprop and 15–20% for bentazone) over an experimental period of 200 days. Oxygen was required to biodegrade the herbicides, since no degradation was observed under anaerobic conditions. This is the first time bentazone degradation has been observed in aquifer material at low oxygen concentrations (2 mg L{sup −1}). The sediment had substantial oxygen consumption (0.92–1.45 O{sub 2} g{sup -1} dw over 200 days) and oxygen was depleted rapidly in most incubations soon after its addition, which might be due to the oxidation of organic matter and other reduced species such as Fe{sup 2+}, S{sup 2−} and Mn in sediment before the biodegradation of herbicides takes place. This study suggests that oxygen enhancement around a drinking water abstraction field could stimulate the bioremediation of diffuse source contamination. - Highlights: • Addition of different oxygen concentrations stimulated degradation of

  11. Microbial degradation of sulfentrazone in a Brazilian rhodic hapludox soil

    Directory of Open Access Journals (Sweden)

    Camila O. Martinez

    2010-03-01

    Full Text Available Sulfentrazone is amongst the most widely used herbicides for treating the main crops in the State of São Paulo, Brazil, but few studies are available on the biotransformation of this compound in Brazilian soils. Soil samples of Rhodic Hapludox soil were supplemented with sulfentrazone (0.7 µg active ingredient (a.i. g-1 soil and maintained at 27ºC. The soil moisture content was corrected to 30, 70 or 100 % water holding capacity (WHC and maintained constant until the end of the experimental period. Herbicide-free soil samples were used as controls. Another experiment was carried out using soil samples maintained at a constant moisture content of 70% WHC, supplemented or otherwise with the herbicide, and submitted to different temperatures of 15, 30 and 40º C. In both experiments, aliquots were removed after various incubation periods for the quantitative analysis of sulfentrazone residues by gas chromatography. Herbicide-degrading microorganisms were isolated and identified. After 120 days a significant effect on herbicide degradation was observed for the factor of temperature, degradation being higher at 30 and 40º C. A half-life of 91.6 days was estimated at 27º C and 70 % WHC. The soil moisture content did not significantly affect sulfentrazone degradation and the microorganisms identified as potential sulfentrazone degraders were Nocardia brasiliensis and Penicillium sp. The present study enhanced the prospects for future studies on the bio-prospecting for microbial populations related to the degradation of sulfentrazone, and may also contribute to the development of strategies for the bioremediation of sulfentrazone-polluted soils.

  12. Microbial degradation of 4-monobrominated diphenyl ether with anaerobic sludge

    Energy Technology Data Exchange (ETDEWEB)

    Shih, Yang-hsin, E-mail: yhs@ntu.edu.tw [Department of Agricultural Chemistry, National Taiwan University, Taipei 106, Taiwan, ROC (China); Chou, Hsi-Ling [Department of Soil and Environmental Sciences, National Chung Hsing University, Taichung 407, Taiwan, ROC (China); Peng, Yu-Huei [Department of Agricultural Chemistry, National Taiwan University, Taipei 106, Taiwan, ROC (China)

    2012-04-30

    Highlights: Black-Right-Pointing-Pointer BDE-3 was degraded with two anaerobes in different rates. Black-Right-Pointing-Pointer Glucose addition augment the debromination efficiencies. Black-Right-Pointing-Pointer Hydrogen gas was detected and relative microbes were identified. Black-Right-Pointing-Pointer Extra-carbon source enhanced degradation partial due to H{sub 2}-generation bacteria. - Abstract: Polybrominated diphenyl ethers (PBDEs) are widely used flame retardant additives for many plastic and electronic products. Owing to their ubiquitous distribution in the environment, multiple toxicity to humans, and increasing accumulation in the environment, the fate of PBDEs is of serious concern for public safety. In this study, the degradation of 4-monobrominated diphenyl ether (BDE-3) in anaerobic sludge and the effect of carbon source addition were investigated. BDE-3 can be degraded by two different anaerobic sludge samples. The by-products, diphenyl ether (DE) and bromide ions, were monitored, indicating the reaction of debromination within these anaerobic samples. Co-metabolism with glucose facilitated BDE-3 biodegradation in terms of kinetics and efficiency in the Jhongsing sludge. Through the pattern of amplified 16S rRNA gene fragments in denatured gradient gel electrophoresis (DGGE), the composition of the microbial community was analyzed. Most of the predominant microbes were novel species. The fragments enriched in BDE-3-degrading anaerobic sludge samples are presumably Clostridium sp. This enrichment coincides with the H{sub 2} gas generation and the facilitation of debromination during the degradation process. Findings of this study provide better understanding of the biodegradation of brominated DEs and can facilitate the prediction of the fate of PBDEs in the environment.

  13. Microbial Dynamics during Aerobic Exposure of Corn Silage Stored under Oxygen Barrier or Polyethylene Films▿

    Science.gov (United States)

    Dolci, Paola; Tabacco, Ernesto; Cocolin, Luca; Borreani, Giorgio

    2011-01-01

    The aims of this study were to compare the effects of sealing forage corn with a new oxygen barrier film with those obtained by using a conventional polyethylene film. This comparison was made during both ensilage and subsequent exposure of silage to air and included chemical, microbiological, and molecular (DNA and RNA) assessments. The forage was inoculated with a mixture of Lactobacillus buchneri, Lactobacillus plantarum, and Enterococcus faecium and ensiled in polyethylene (PE) and oxygen barrier (OB) plastic bags. The oxygen permeability of the PE and OB films was 1,480 and 70 cm3 m−2 per 24 h at 23°C, respectively. The silages were sampled after 110 days of ensilage and after 2, 5, 7, 9, and 14 days of air exposure and analyzed for fermentation characteristics, conventional microbial enumeration, and bacterial and fungal community fingerprinting via PCR-denaturing gradient gel electrophoresis (DGGE) and reverse transcription (RT)-PCR-DGGE. The yeast counts in the PE and OB silages were 3.12 and 1.17 log10 CFU g−1, respectively, with corresponding aerobic stabilities of 65 and 152 h. Acetobacter pasteurianus was present at both the DNA and RNA levels in the PE silage samples after 2 days of air exposure, whereas it was found only after 7 days in the OB silages. RT-PCR-DGGE revealed the activity of Aspergillus fumigatus in the PE samples from the day 7 of air exposure, whereas it appeared only after 14 days in the OB silages. It has been shown that the use of an oxygen barrier film can ensure a longer shelf life of silage after aerobic exposure. PMID:21821764

  14. A novel biosensor for p-nitrophenol based on an aerobic anode microbial fuel cell.

    Science.gov (United States)

    Chen, Zhengjun; Niu, Yongyan; Zhao, Shuai; Khan, Aman; Ling, Zhenmin; Chen, Yong; Liu, Pu; Li, Xiangkai

    2016-11-15

    P-nitrophenol is one of the most common contaminants in chemical industrial wastewater, and in situ real-time monitoring of PNP cannot be achieved by conventional analytical techniques. Here, a two-chamber microbial fuel cell with an aerobic anode chamber was tested as a biosensor for in situ real-time monitoring of PNP. Pseudomonas monteilii LZU-3, which was used as the biological recognition element, can form a biofilm on the anode electrode using PNP as a sole substrate. The optimal operation parameters of the biosensor were as follows: external resistance 1000Ω, pH 7.8, temperature 30°C, and maximum PNP concentration 50mgL(-1). Under these conditions, the maximum voltages showed a linear relationship with PNP concentrations ranging from 15±5 to 44±4.5mgL(-1). Furthermore, we developed a novel portable device for in situ real-time monitoring of PNP. When the device was applied to measure PNP in wastewater containing various additional aromatic compounds and metal ions, the performance of the biosensor was not affected and the correlation between the maximum voltages and the PNP concentrations ranging from 9±4mgL(-1) to 36 ± 5mgL(-1) was conserved. The results demonstrated that the MFC biosensor provides a rapid and cost-efficient analytical method for real-time monitoring of toxic and recalcitrant pollutants in environmental samples. PMID:27295573

  15. Enhanced phosphorus recovery and biofilm microbial community changes in an alternating anaerobic/aerobic biofilter.

    Science.gov (United States)

    Tian, Qing; Ong, Say Kee; Xie, Xuehui; Li, Fang; Zhu, Yanbin; Wang, Feng Rui; Yang, Bo

    2016-02-01

    The operation of an alternating anaerobic/aerobic biofilter (AABF), treating synthetic wastewater, was modified to enhance recovery of phosphorus (P). The AABF was periodically fed with an additional carbon source during the anaerobic phase to force the release of biofilm-sequestered P which was then harvested and recovered. A maximum of 48% of the total influent P was found to be released in the solution for recovery. Upon implementation of periodic P bio-sequestering and P harvesting, the predominant bacterial communities changed from β-Proteobacteria to γ-Proteobacteria groups. The genus Pseudomonas of γ-Proteobacteria was found to enrich greatly with 98% dominance. Dense intracellular poly-P granules were found within the cells of the biofilm, confirming the presence of P accumulating organisms (PAOs). Periodic addition of a carbon source to the AABF coupled with intracellular P reduction during the anaerobic phase most probably exerted environmental stress in the selection of Pseudomonas PAOs over PAOs of other phylogenic types. Results of the study provided operational information on the selection of certain microbial communities for P removal and recovery. This information can be used to further advance P recovery in biofilm systems such as the AABFs.

  16. Effect of wastewater COD/N ratio on aerobic nitrifying sludge granulation and microbial population shift

    Institute of Scientific and Technical Information of China (English)

    Lei Wu; Chengyao Peng; Yongzhen Peng; Lingyun Li; Shuying Wang; Yong Ma

    2012-01-01

    The effect of COD/N ratio on the granulation process and microbial population succession was investigated.Four identical sequencing batch reactors,R1,R2,R3 and R4,were operated with various initial COD/N ratios ranging from 0/200 to 800/200 (m/n).Ethanol was fed as the source of COD.Aerobic granules were successfully cultivated in R2 and R3,operating with the COD/N ratio of 200/200 and 400/200,respectively.Scanning electron microscope observations indicated that short rod-shaped and spherical bacteria were dominant in R2,while granules produced in R3 were surrounded with a large amount of filamentous bacteria.The average specific nitritation rate in R2 and R3 were 0.019 and 0.008 mg N/(mg MLVSS.hr),respectively.Fluorescence in situ hybridization results demonstrated that nitrifying bacteria population was enriched remarkably in R2.It indicated that nitrification ability and nitrifying bacteria population were enriched remarkably at low COD/N ratio.However,no granules were formed in R1and R4 which might attribute to either limited or excessive extracellular polymeric substances production.This study contributed to a better understanding of the role of COD/N ratio in nitrifying sludge granulation.

  17. Molecular analysis of phenol-degrading microbial strains.

    Science.gov (United States)

    Manasiev, Jordan; Gerginova, Maria; Yemendzhiev, Hyusein; Peneva, Nadejda; Alexieva, Zlatka

    2008-01-01

    In an attempt to estimate the occurrence of phenol hydroxylase-related gene sequences we performed a dot blot hybridization assay with DNA from phenol utilizing Trichosporon cutaneum R57 strain NBIMCC 2414 and microbial isolates from different wastewaters. The used oligonucletides were homologous to the 5'-end of TORPHD locus (NCBI)-coding phenol hydroxylase in Trichosporon cutaneum ATCC 46490 and to the 5'-end of TORCCMLE locus (NCBI)-coding cis,cis-muconate-lactonizing enzyme in Trichosporon cutaneum ATCC 58094. Two microbial strains, Escherichia coli JM 109 and Lactobacillus acidophilus ATCC 4356, incapable to degrade phenol were used as negative controls. We established the presence of hybridization with both used oligonucleotide probes in T. cutaneum R57 and T. cutaneum ATCC 46490 yeast strains. The experiments implemented with microbial isolates obtained from three industrialized areas in Bulgaria showed that 7 of them may carry sequences hybridizing with a phenol hydroxylase oligonucleotide probe. A subsequent hybridization test for the cis,cis-muconate-lactonizing enzyme showed that only 3 of them displayed a positive signal. Lactobacillus acidophilus ATCC 4356 and Escherichia coli JM 109 strains' DNA used as negative controls in the experiments did not reveal any sequence similarity to the both applied oligonucleotides. The partial nucleotide sequences of 16S rDNAs of the isolated strains C1 and K1 obtained as PCR products were determined and sequenced. A comparison of these nucleotide sequences with similar sequences in NCBI Data Bank indicated that both C1 and K1 strains are closely related to the genera Acinetobacter and Burkholderia.

  18. Use of Advanced Oxidation and Aerobic Degradation for Remediation of Various Hydrocarbon Contaminates

    Energy Technology Data Exchange (ETDEWEB)

    Paul Fallgren

    2009-03-06

    Western Research Institute in conjunction with Sierra West Consultants, Inc., Tetra Tech, Inc., and the U.S. Department of Energy conducted laboratory and field studies to test different approaches to enhance degradation of hydrocarbons and associated contaminants. WRI in conjunction with Sierra West Consultants, Inc., conducted a laboratory and field study for using ozone to treat a site contaminated with MTBE and other hydrocarbons. Results from this study demonstrate that a TOD test can be used to resolve the O{sub 3} dosage problem by establishing a site-specific benchmark dosage for field ozone applications. The follow-up testing of the laboratory samples provided indications that intrinsic biodegradation could be stimulated by adding oxygen. Laboratory studies also suggests that O3 dosage in the full-scale field implementation could be dialed lower than stoichiometrically designed to eliminate the formation of Cr(VI). WRI conducted a study involving a series of different ISCO oxidant applications to diesel-contaminated soil and determined the effects on enhancing biodegradation to degrade the residual hydrocarbons. Soils treated with permanganate followed by nutrients and with persulfate followed by nutrients resulted in the largest decrease in TPH. The possible intermediates and conditions formed from NOM and TPH oxidation by permanganate and activated persulfate favors microbial TPH degrading activity. A 'passive-oxidation' method using microbial fuel cell (MFC) technology was conducted by WRI in conjunction with Tetra Tech, Inc., to degrade MTBE in groundwater. These experiments have demonstrated that a working MFC (i.e., one generating power) could be established in the laboratory using contaminated site water or buffered media inoculated with site water and spiked with MTBE, benzene, or toluene. Electrochemical methods were studied by WRI with goal of utilizing low voltage and amperage electrical sources for 'geo-oxidation' of organic

  19. Bioremediation via in situ microbial degradation of organic pollutants.

    Science.gov (United States)

    Vogt, Carsten; Richnow, Hans Hermann

    2014-01-01

    Contamination of soil and natural waters by organic pollutants is a global problem. The major organic pollutants of point sources are mineral oil, fuel components, and chlorinated hydrocarbons. Research from the last two decades discovered that most of these compounds are biodegradable under anoxic conditions. This has led to the rise of bioremediation strategies based on the in situ biodegradation of pollutants. Monitored natural attenuation is a concept by which a contaminated site is remediated by natural biodegradation; to evaluate such processes, a combination of chemical and microbiological methods are usually used. Compound specific stable isotope analysis emerged as a key method for detecting and quantifying in situ biodegradation. Natural attenuation processes can be initiated or accelerated by manipulating the environmental conditions to become favorable for indigenous pollutant degrading microbial communities or by adding externally breeded specific pollutant degrading microorganisms; these techniques are referred to as enhanced natural attenuation. Xenobiotic micropollutants, such as pesticides or pharmaceuticals, contaminate diffusively large areas in low concentrations; the biodegradation pattern of such contaminations are not yet understood. PMID:24337042

  20. Characteristics of oil microbes and microbial degradation on heavy oil

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, T.S.; Jiang, Z.Y.; Chen, X.; Huang, S. [Southwest Petroleum Univ. (China)

    2006-07-01

    Strains of bacteria were investigated for a microbial enhanced oil recovery (MEOR) project at an oilfield in China. Samples of oil and bacteria were packed into conical flasks and incubated for 3 to 5 days at formation temperatures. The polymerase chain reaction was used to alter the DNA sequence of the microbes and increase the recovery mechanisms of the bacteria and enable them to more effectively degrade gums and asphaltenes. The gas-producing properties of the bacteria were then investigated. Changes in oil group composition were analyzed. The results of gas chromatography analyses showed that the bacteria combination selectively degraded different components of the phenanthrene series. As they matured, the bacteria caused the light aromatics in the oil to increase and evolved towards a naphthalene nucleus structure with greater stability. The bacteria were then tested within an oil well at the Xinjiang oilfield in China. Results of the field tests showed that the bacteria altered the group composition of oils as well as the phenanthrene series. The MEOR experiment increased oil output from 8.53 per cent to 35.72 per cent. 8 refs., 4 tabs., 6 figs.

  1. Treatment of anthraquinone dye wastewater by hydrolytic acidification-aerobic process

    Institute of Scientific and Technical Information of China (English)

    YANG Jian; WU Min; Li Dan

    2004-01-01

    Experiment on microbial degradation with two kinds of biological process, hydrolytic acidification-aerobic process and aerobic process was conducted to treat the anthraquinone dye wastewater with CODCr concentration of 400 mg/L and chroma 800. The experimental result demonstrated that the hydrolytic-aerobic process could raise the biodegradability of anthraquinone dye wastewater effectively. The effluent CODCr can reach 120-170 mg/L and chroma 150 which is superior to that from simple aerobic process.

  2. In situ exposure to low herbicide concentrations affects microbial population composition and catabolic gene frequency in an aerobic shallow aquifer

    DEFF Research Database (Denmark)

    de Lipthay, J.R.; Tuxen, Nina; Johnsen, Kaare;

    2003-01-01

    and were analyzed for the presence of general microbial populations, Pseudomonas bacteria, and specific phenoxy acid degraders. Both culture-dependent and culture-independent methods were applied. The abundance of microbial phenoxy acid degraders (10(0) to 10(4) g(-1) sediment) was determined by most...... probable number assays, and their presence was only detected in herbicide-exposed sediments. Similarly, PCR analysis showed that the 2,4-dichlorophe-noxyacetic acid degradation pathway genes tfdA and tfdB (10(2) to 10(3) gene copies g(-1) sediment) were only detected in sediments from contaminated areas...... of the aquifer. PCR-restriction fragment length polymorphism measurements demonstrated the presence of different populations of tfd genes, suggesting that the in situ herbicide degradation was caused by the activity of a heterogeneous population of phenoxy acid degraders. The number of Pseudomonas bacteria...

  3. Protective effect of hop ß-acids on microbial degradation of thick juice during storage

    OpenAIRE

    Justé, Annelies; Krause, M.S.; Lievens, Bart; Klingeberg, M; Michiels, Christiaan; Willems, Kris

    2008-01-01

    Storing sugar extracts as thick juice, a form of sucrose syrup, is common practice in the sugar industry. However, thick juice storage commonly faces problems due to microbial degradation. In this study the value of a commercial alkaline solution of hop β-acids (HBA) was assessed for prevention of microbial degradation of thick juice. The antimicrobial effect of different concentrations of HBA against juice degradation was tested in a pilot-scale thick juice storage experiment. Thick juice de...

  4. Continuous exposure of pesticides in an aquifer changes microbial biomass, diversity and degradation potential

    DEFF Research Database (Denmark)

    de Lipthay, J. R.; Johnsen, K.; Aamand, J.;

    2000-01-01

    We studied in situ effects of pesticide exposure on microbial degradation potential and community structure of aquifer sediments. Sediment samples pre-exposed to pesticides were significantly different to non-exposed control samples. Pre-exposed sediment showed an increased degradation potential...... towards phenoxyalcanoic acid herbicides as well as impact on microbial diversity was observed. Furthermore, bacterial biomass was changed, e.g. increased numbers of phenoxyalcanoic acid degraders in pesticide exposed sediment....

  5. Microrespirometric determination of the effectiveness factor and biodegradation kinetics of aerobic granules degrading 4-chlorophenol as the sole carbon source.

    Science.gov (United States)

    Vital-Jacome, Miguel; Buitrón, Germán; Moreno-Andrade, Ivan; Garcia-Rea, Victor; Thalasso, Frederic

    2016-08-01

    In this study, a microrespirometric method was used, i.e., pulse respirometry in microreactors, to characterize mass transfer and biodegradation kinetics in aerobic granules. The experimental model was an aerobic granular sludge in a sequencing batch reactor (SBR) degrading synthetic wastewater containing 4-chlorophenol as the sole carbon source. After 15 days of acclimation, the SBR process degraded 4-chlorophenol at a removal rate of up to 0.9kg CODm(-3)d(-1), and the degradation kinetics were well described by the Haldane model. The microrespirometric method consisted of injecting pulses of 4-chlorophenol into the 24 wells of a microreactor system containing the SBR samples. From the respirograms obtained, the following five kinetic parameters were successfully determined during reactor operation: (i) Maximum specific oxygen uptake rate, (ii) substrate affinity constant, (iii) substrate inhibition constant, (iv) maximum specific growth rate, and (v) cell growth yield. Microrespirometry tests using granules and disaggregated granules allowed for the determination of apparent and intrinsic parameters, which in turn enabled the determination of the effectiveness factor of the granular sludge. It was concluded that this new high-throughput method has the potential to elucidate the complex biological and physicochemical processes of aerobic granular biosystems. PMID:27054670

  6. Impact of Land Degradation on Soil Microbial Biomass and Activity in Northeast Brazil

    Institute of Scientific and Technical Information of China (English)

    J. S. NUNES; A. S. F. ARAUJO; L. A. P. L. NUNES; L. M. LIMA; R. F. V. CARNEIRO; A. A. C. SALVIANO; S. M. TSAI

    2012-01-01

    Land degradation causes great changes in the soil biological properties.The process of degradation may decrease soil microbial biomass and consequently decrease soil microbial activity.The study was conducted out during 2009 and 2010 at the four sites of land under native vegetation (NV),moderately degraded land (LDL),highly degraded land (HDL) and land under restoration for four years (RL) to evaluate changes in soil microbial biomass and activity in lands with different degradation levels in comparison with both land under native vegetation and land under restoration in Northeast Brazil.Soil samples were collected at 0-10 cm depth.Soil organic carbon (SOC),soil microbial biomass C (MBC) and N (MBN),soil respiration (SR),and hydrolysis of fluorescein diacetate (FDA) and dehydrogenase (DHA) activities were analyzed.After two years of evaluation,soil MBC,MBN,FDA and DHA had higher values in the NV,followed by the RL.The decreases of soil microbial biomass and enzyme activities in the degraded lands were approximately 8-10 times as large as those found in the NV.However,after land restoration,the MBC and MBN increased approximately 5-fold and 2-fold,respectively,compared with the HDL.The results showed that land degradation produced a strong decrease in soil microbial biomass.However,land restoration may promote short- and long-term increases in soil microbial biomass.

  7. Soil degradation and amendment effects on soil properties, microbial communities, and plant growth

    Science.gov (United States)

    Gebhardt, M.; Fehmi, J. S.; Rasmussen, C.; Gallery, R. E.

    2015-12-01

    Human activities that disrupt soil properties are fundamentally changing ecosystems. Soil degradation, caused by anthropogenic disturbance can decrease microbial abundance and activity, leading to changes in nutrient availability, soil organic matter, and plant establishment. The addition of amendments to disturbed soils have the potential ameliorate these negative consequences. We studied the effects of soil degradation, via an autoclave heat shock method, and the addition of amendments (biochar and woodchips) on microbial activity, soil carbon and nitrogen availability, microbial biomass carbon and nitrogen content, and plant growth of ten plant species native to the semi-arid southwestern US. Relative to non-degraded soils, microbial activity, measured via extracellular enzyme assays, was significantly lower for all seven substrates assayed. These soils also had significantly lower amounts of carbon assimilated into microbial biomass but no change in microbial biomass nitrogen. Soil degradation had no effect on plant biomass. Amendments caused changes in microbial activity: biochar-amended soils had significant increases in potential activity with five of the seven substrates measured; woodchip amended soils had significant increases with two. Soil carbon increased with both amendments but this was not reflected in a significant change in microbial biomass carbon. Biochar-amended soils had increases in soil nitrogen availability but neither amendment caused changes in microbial biomass nitrogen. Biochar amendments had no significant effect on above- or belowground plant biomass while woodchips significantly decreased aboveground plant biomass. Results show that soil degradation decreases microbial activity and changes nutrient dynamics, but these are not reflected in changes in plant growth. Amendments provide nutrient sources and change soil pore space, which cause microbial activities to fluctuate and may, in the case of woodchips, increase plant drought

  8. Cultivating microbial dark matter in benzene-degrading methanogenic consortia.

    Science.gov (United States)

    Luo, Fei; Devine, Cheryl E; Edwards, Elizabeth A

    2016-09-01

    The microbes responsible for anaerobic benzene biodegradation remain poorly characterized. In this study, we identified and quantified microbial populations in a series of 16 distinct methanogenic, benzene-degrading enrichment cultures using a combination of traditional 16S rRNA clone libraries (four cultures), pyrotag 16S rRNA amplicon sequencing (11 cultures), metagenome sequencing (1 culture) and quantitative polymerase chain reaction (qPCR; 12 cultures). An operational taxonomic unit (OTU) from the Deltaproteobacteria designated ORM2 that is only 84% to 86% similar to Syntrophus or Desulfobacterium spp. was consistently identified in all enrichment cultures, and typically comprised more than half of the bacterial sequences. In addition to ORM2, a sequence belonging to Parcubacteria (candidate division OD1) identified from the metagenome data was the only other OTU common to all the cultures surveyed. Culture transfers (1% and 0.1%) were made in the presence and absence of benzene, and the abundance of ORM2, OD1 and other OTUs was tracked over 415 days using qPCR. ORM2 sequence abundance increased only when benzene was present, while the abundance of OD1 and other OTUs increased even in the absence of benzene. Deltaproteobacterium ORM2 is unequivocally the benzene-metabolizing population. This study also hints at laboratory cultivation conditions for a member of the widely distributed yet uncultivated Parcubacteria (OD1).

  9. Fungal degradation of pesticides - construction of microbial consortia for bioremediation

    DEFF Research Database (Denmark)

    Ellegaard-Jensen, Lea

    and Mortierella sp. LEJ703. In the experimental setup a layer of sterile glass beads was added between the organisms and the sand column above; simulating air-filled gaps in soil. [Ring-U-14C]-diuron was mixed into the sand to a concentration of 100 μg diuron kg-1. Degradation was measured as the amount of 14C......-diuron mineralized and as 14C residues in the sand at experimental termination. Mineralization results established the three-member consortium LEJ702/SRS16/D47 as the most efficient transforming 32% of the diuron to 14CO2, while the single strains or other consortia mineralized no more than 10%. Furthermore...... in groundwater contamination. New technologies are therefore needed for cleaning up contaminated soil and water resources. This PhD was part of the project entitled Microbial Remediation of Contaminated Soil and Water Resources (MIRESOWA) where the overall aim is to develop new technologies for bioremediation...

  10. Effects of bioreactor retention time on aerobic microbial decomposition of CELSS crop residues

    Science.gov (United States)

    Strayer, R. F.; Finger, B. W.; Alazraki, M. P.

    1997-01-01

    The focus of resource recovery research at the KSC-CELSS Breadboard Project has been the evaluation of microbiologically mediated biodegradation of crop residues by manipulation of bioreactor process and environmental variables. We will present results from over 3 years of studies that used laboratory- and breadboard-scale (8 and 120 L working volumes, respectively) aerobic, fed-batch, continuous stirred tank reactors (CSTR) for recovery of carbon and minerals from breadboard grown wheat and white potato residues. The paper will focus on the effects of a key process variable--bioreactor retention time--on response variables indicative of bioreactor performance. The goal is to determine the shortest retention time that is feasible for processing CELSS crop residues, thereby reducing bioreactor volume and weight requirements. Pushing the lower limits of bioreactor retention times will provide useful data for engineers who need to compare biological and physicochemical components. Bioreactor retention times were manipulated to range between 0.25 and 48 days. Results indicate that increases in retention time lead to a 4-fold increase in crop residue biodegradation, as measured by both dry weight losses and CO_2 production. A similar overall trend was also observed for crop residue fiber (cellulose and hemicellulose), with a noticeable jump in cellulose degradation between the 5.3 day and 10.7 day retention times. Water-soluble organic compounds (measured as soluble TOC) were appreciably reduced by more than 4-fold at all retention times tested. Results from a study of even shorter retention times (down to 0.25 days), in progress, will also be presented.

  11. Microbial Community Transplant Results in Increased and Long-Term Oxalate Degradation.

    Science.gov (United States)

    Miller, Aaron W; Oakeson, Kelly F; Dale, Colin; Dearing, M Denise

    2016-08-01

    Gut microbes are essential for the degradation of dietary oxalate, and this function may play a role in decreasing the incidence of kidney stones. However, many oxalate-degrading bacteria are susceptible to antibiotics and the use of oxalate-degrading probiotics has only led to an ephemeral reduction in urinary oxalate. The objective of the current study was to determine the efficacy of using whole-community microbial transplants from a wild mammalian herbivore, Neotoma albigula, to increase oxalate degradation over the long term in the laboratory rat, Rattus norvegicus. We quantified the change in total oxalate degradation in lab rats immediately after microbial transplants and at 2- and 9-month intervals following microbial transplants. Additionally, we tracked the fecal microbiota of the lab rats, with and without microbial transplants, using high-throughput Illumina sequencing of a hyper-variable region of the 16S rRNA gene. Microbial transplants resulted in a significant increase in oxalate degradation, an effect that persisted 9 months after the initial transplants. Functional persistence was corroborated by the transfer, and persistence of a group of bacteria previously correlated with oxalate consumption in N. albigula, including an anaerobic bacterium from the genus Oxalobacter known for its ability to use oxalate as a sole carbon source. The results of this study indicate that whole-community microbial transplants are an effective means for the persistent colonization of oxalate-degrading bacteria in the mammalian gut. PMID:27312892

  12. Soil-Derived Microbial Consortia Enriched with Different Plant Biomass Reveal Distinct Players Acting in Lignocellulose Degradation.

    Science.gov (United States)

    de Lima Brossi, Maria Julia; Jiménez, Diego Javier; Cortes-Tolalpa, Larisa; van Elsas, Jan Dirk

    2016-04-01

    Here, we investigated how different plant biomass, and-for one substrate-pH, drive the composition of degrader microbial consortia. We bred such consortia from forest soil, incubated along nine aerobic sequential - batch enrichments with wheat straw (WS1, pH 7.2; WS2, pH 9.0), switchgrass (SG, pH 7.2), and corn stover (CS, pH 7.2) as carbon sources. Lignocellulosic compounds (lignin, cellulose and xylan) were best degraded in treatment SG, followed by CS, WS1 and WS2. In terms of composition, the consortia became relatively stable after transfers 4 to 6, as evidenced by PCR-DGGE profiles obtained from each consortium DNA. The final consortia differed by ~40 % (bacteria) and ~60 % (fungi) across treatments. A 'core' community represented by 5/16 (bacteria) and 3/14 (fungi) bands was discerned, next to a variable part. The composition of the final microbial consortia was strongly driven by the substrate, as taxonomically-diverse consortia appeared in the different substrate treatments, but not in the (WS) different pH one. Biodegradative strains affiliated to Sphingobacterium kitahiroshimense, Raoultella terrigena, Pseudomonas putida, Stenotrophomonas rhizophila (bacteria), Coniochaeta ligniaria and Acremonium sp. (fungi) were recovered in at least three treatments, whereas strains affiliated to Delftia tsuruhatensis, Paenibacillus xylanexedens, Sanguibacter inulus and Comamonas jiangduensis were treatment-specific. PMID:26487437

  13. Evaluation of Biostimulation and Bioaugmentation To Stimulate Hexahydro-1,3,5-trinitro-1,3,5,-triazine Degradation in an Aerobic Groundwater Aquifer.

    Science.gov (United States)

    Michalsen, Mandy M; King, Aaron S; Rule, Rebecca A; Fuller, Mark E; Hatzinger, Paul B; Condee, Charles W; Crocker, Fiona H; Indest, Karl J; Jung, Carina M; Istok, Jack D

    2016-07-19

    Hexahydro-1,3,5-trinitro-1,3,5,-triazine (RDX) is a toxic and mobile groundwater contaminant common to military sites. This study compared in situ RDX degradation rates following bioaugmentation with Gordonia sp. strain KTR9 (henceforth KTR9) to rates under biostimulation conditions in an RDX-contaminated aquifer in Umatilla, OR. Bioaugmentation was achieved by injecting site groundwater (6000 L) amended with KTR9 cells (10(8) cells mL(-1)) and low carbon substrate concentrations (15 mM fructose) carbon substrate concentrations in an effort to stimulate aerobic or anaerobic microbial activity, respectively. Single-well push-pull tests were conducted to measure RDX degradation rates for each treatment. Average rate coefficients were 1.2 day(-1) for bioaugmentation and 0.7 day(-1) for high carbon biostimulation; rate coefficients for low carbon biostimulation were not significantly different from zero (p values ≥0.060). Our results suggest that bioaugmentation with KTR9 is a feasible strategy for in situ biodegradation of RDX and, at this site, is capable of achieving RDX concentration reductions comparable to those obtained by high carbon biostimulation while requiring ~97% less fructose. Bioaugmentation has potential to minimize substrate quantities and associated costs, as well as secondary groundwater quality impacts associated with anaerobic biostimulation processes (e.g., hydrogen sulfide, methane production) during full-scale RDX remediation.

  14. Evaluation of Biostimulation and Bioaugmentation To Stimulate Hexahydro-1,3,5-trinitro-1,3,5,-triazine Degradation in an Aerobic Groundwater Aquifer.

    Science.gov (United States)

    Michalsen, Mandy M; King, Aaron S; Rule, Rebecca A; Fuller, Mark E; Hatzinger, Paul B; Condee, Charles W; Crocker, Fiona H; Indest, Karl J; Jung, Carina M; Istok, Jack D

    2016-07-19

    Hexahydro-1,3,5-trinitro-1,3,5,-triazine (RDX) is a toxic and mobile groundwater contaminant common to military sites. This study compared in situ RDX degradation rates following bioaugmentation with Gordonia sp. strain KTR9 (henceforth KTR9) to rates under biostimulation conditions in an RDX-contaminated aquifer in Umatilla, OR. Bioaugmentation was achieved by injecting site groundwater (6000 L) amended with KTR9 cells (10(8) cells mL(-1)) and low carbon substrate concentrations (15 mM fructose) carbon substrate concentrations in an effort to stimulate aerobic or anaerobic microbial activity, respectively. Single-well push-pull tests were conducted to measure RDX degradation rates for each treatment. Average rate coefficients were 1.2 day(-1) for bioaugmentation and 0.7 day(-1) for high carbon biostimulation; rate coefficients for low carbon biostimulation were not significantly different from zero (p values ≥0.060). Our results suggest that bioaugmentation with KTR9 is a feasible strategy for in situ biodegradation of RDX and, at this site, is capable of achieving RDX concentration reductions comparable to those obtained by high carbon biostimulation while requiring ~97% less fructose. Bioaugmentation has potential to minimize substrate quantities and associated costs, as well as secondary groundwater quality impacts associated with anaerobic biostimulation processes (e.g., hydrogen sulfide, methane production) during full-scale RDX remediation. PMID:27301804

  15. [Degradation of cassava residue by the cellulose degradation composite microbial system MC1].

    Science.gov (United States)

    Guo, Peng; Wang, Xiao-Fen; Zhu, Wan-Bin; Cheng, Xu; Cui, Zong-Jun

    2008-03-01

    The lignocelluloses of cassava residue are good biomass resources. They are mainly used to produce feeds and alcohol. It is a promising approach to utilize them to produce methane. But it is difficult to use cassava residue for producing methane because of its dispersive solid matter and much water. A cellulose degradation composite microbial system MC1 was applied to degrade cassava residue discarded from cassava starch manufactory, and the composition of the lignocelluloses and the soluble ingredients of cassava residue were analyzed. After 18 days' cultivation, the total weight of the cassava residue was reduced by 47.3%, the cellulose, hemi-cellulose and lignin of the cassava residue were reduced by 22.7%, 90.4% and 11.3%, respectively, and 85% of the whole weight relief was made by MC1 within 6 days. The soluble ingredients of the cassava residue were increased from the incipient 18% to 33% in the third day which was the peak value in the process. The total amount of the volatile products, analyzed by GC-MS, came to a maximum in the sixth day. Twelve kinds of volatile products in the fermentation broth were determined, in which ethanol, acetic acid, 1, 2-ethanediol, butanoic acid and glycerine were the major compounds, and they can be utilized by methanogenic organism directly or be changed into compounds that can be utilized by methanogens organism directly. Accordingly, it is very hopeful to use MC1 to degrade cassava residue as a method of prefermentation in methane fermentation.

  16. Methanogenic degradation of (amino)aromatic compounds by anaerobic microbial communities

    NARCIS (Netherlands)

    Linkova, Y.V.; Stams, A.J.M.

    2011-01-01

    Degradation of a range of aromatic substrates by anaerobic microbial communities was studied. Active methanogenic microbial communities decomposing aminoaromatic acids and azo dyes into CH4 and CO2 were isolated. Products of primary conversion were found to be 2-hydroxybenzyl and benzyl alcohols gra

  17. Comparative metagenomic analysis of PAH degradation in soil by a mixed microbial consortium.

    Science.gov (United States)

    Zafra, German; Taylor, Todd D; Absalón, Angel E; Cortés-Espinosa, Diana V

    2016-11-15

    In this study, we used a taxonomic and functional metagenomic approach to analyze some of the effects (e.g. displacement, permanence, disappearance) produced between native microbiota and a previously constructed Polycyclic Aromatic Hydrocarbon (PAH)-degrading microbial consortium during the bioremediation process of a soil polluted with PAHs. Bioaugmentation with a fungal-bacterial consortium and biostimulation of native microbiota using corn stover as texturizer produced appreciable changes in the microbial diversity of polluted soils, shifting native microbial communities in favor of degrading specific populations. Functional metagenomics showed changes in gene abundance suggesting a bias towards aromatic hydrocarbon and intermediary degradation pathways, which greatly favored PAH mineralization. In contrast, pathways favoring the formation of toxic intermediates such as cytochrome P450-mediated reactions were found to be significantly reduced in bioaugmented soils. PAH biodegradation in soil using the microbial consortium was faster and reached higher degradation values (84% after 30 d) as a result of an increased co-metabolic degradation when compared with other mixed microbial consortia. The main differences between inoculated and non-inoculated soils were observed in aromatic ring-hydroxylating dioxygenases, laccase, protocatechuate, salicylate and benzoate-degrading enzyme genes. Based on our results, we propose that several concurrent metabolic pathways are taking place in soils during PAH degradation. PMID:27484946

  18. Methods of lab silos sealing and fermentation characteristics and aerobic stability of sugarcane silage treated with microbial additive

    Directory of Open Access Journals (Sweden)

    Charles Ortiz Novinski

    2012-02-01

    Full Text Available The present experimental assay evaluated the effect of lab silo sealing methods on the ensilage of the sugarcane, with or without microbial additives (Lactobacillus plantarum and Propionibacterium acidipropionici. Twenty-liter plastic buckets were used as experimental silos, which were sealed with either a polyethylene sheet (silo cover with a mesh size of 200 µm or an appropriate plastic lid equipped with Bunsen valve. Silos were stored for 30, 60, or 90 days. Fermentative losses, chemical composition, organic acids, ethanol and aerobic stability were evaluated. The sealing method employed did not influence most of evaluated variables, showing a small decrease of effluent production in silos covered with polyethylene sheet. The microbial additive did not avoid dry matter (DM fermentative losses in sugarcane silages (216 g kg-1, nor affected aerobic stability (44.6 hours. The levels of neutral and acid detergent fiber of fresh sugarcane increased after ensiling due to DM losses as gases and effluent. The ethanol content of silages was not influenced by treatments (mean 146 g kg-1 of DM. The sealing methods of experimental silos were not affected by the evaluated variables; polyethylene sheet and plastic lid show the same performance on the fermentative model and both methods represent well the conditions of large scale farm silos.

  19. DECOLORIZATION AND BIOLOGICAL DEGRADATION OF AZO DYE REACTIVE RED2 BY ANAEROBIC/AEROBIC SEQUENTIAL PROCESS

    Directory of Open Access Journals (Sweden)

    A. Naimabadi ، H. Movahedian Attar ، A. Shahsavani

    2009-04-01

    Full Text Available This study investigates the anaerobic treatability of reactive Red2 in an anaerobic/aerobic sequential process. Laboratory scale anaerobic baffled reactor and fixed activated sludge reactor were operated at different organic loadings and hydraulic retention times. The effects of shock dye concentration on the chemical oxygen demand and color removal efficiencies were investigated in the anaerobic baffled reactor. The effect of hydraulic retention time on the color and chemical oxygen demand removal efficiencies were also investigated in the aerobic reactor. The studies were carried out in continuous mode and the effluent of the anaerobic baffled reactor was used as feed for the fixed activated sludge reactor. Chemical oxygen demand removal efficiency of 54.5% was obtained at HRT =1 day in the anaerobic reactor. The average color removal was 89.5%. Chemical oxygen demand removal efficiency of 69% was obtained at HRT =7 h in the aerobic fixed activated sludge reactor. A slight decrease of the color was also observed in the aerobic reactor. This investigation has shown that successful treatment of a highly colored wastewater is possible in the anaerobic baffled reactor. Also the results showed that, anaerobic biological system has higher efficiency in dye removal than fixed activated sludge system, while aerobic system has higher efficiency in chemical oxygen demand removal comparing with the anaerobic baffled reactor.

  20. Ideonella sakaiensis sp. nov., isolated from a microbial consortium that degrades poly(ethylene terephthalate).

    Science.gov (United States)

    Tanasupawat, Somboon; Takehana, Toshihiko; Yoshida, Shosuke; Hiraga, Kazumi; Oda, Kohei

    2016-08-01

    A Gram-stain-negative, aerobic, non-spore-forming, rod-shaped bacterium, designed strain 201-F6T, was isolated from a microbial consortium that degrades poly(ethylene terephthalate) (PET) collected in Sakai city, Japan, and was characterized on the basis of a polyphasic taxonomic study. The cells were motile with a polar flagellum. The strain contained cytochrome oxidase and catalase. It grew within the pH range 5.5-9.0 (optimally at pH 7-7.5) and at 15-42 ºC (optimally at 30-37 ºC). The major isoprenoid quinone was ubiquinone with eight isoprene units (Q-8). C16 : 0, C17 : 0 cyclo, C18 :1ω7c and C12 : 0 2-OH were the predominant cellular fatty acids. The major polar lipids were phosphatidylethanolamine, lyso-phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol. The G+C content of genomic DNA was 70.4 mol%. Phylogenetic analysis using the 16S rRNA gene sequences showed that strain 201-F6T was affiliated to the genus Ideonella, and was closely related to Ideonella dechloratans LMG 28178T (97.7 %) and Ideonella azotifigens JCM 15503T (96.6 %). Strain 201-F6T could be clearly distinguished from the related species of the genus Ideonella by its physiological and biochemical characteristics as well as by its phylogenetic position and DNA-DNA relatedness. Therefore, the strain represents a novel species of the genus Ideonella, for which the name Ideonella sakaiensis sp. nov. (type strain 201-F6T=NBRC 110686T=TISTR 2288T) is proposed. PMID:27045688

  1. Microbial decolorization of reactive black-5 in a two-stage anaerobic-aerobic reactor using acclimatized activated textile sludge.

    Science.gov (United States)

    Mohanty, Sagarika; Dafale, Nishant; Rao, Nageswara Neti

    2006-10-01

    A two-stage anaerobic-aerobic treatment process based on mixed culture of bacteria isolated from textile dye effluent was used to degrade reactive black 5 dye (RB-5). The anaerobic step was studied in more detail by varying the dye concentration from 100 to 3000 mg l(-1). The results showed that major decolorization was achieved during the anaerobic process. The time required for decolorization by > 90% increased as the concentration of the dye increased. It was also found that maintaining dissolved oxygen (DO) concentration below 0.5 mg l(-1 )and addition of a co-substrate viz., glucose, facilitates anaerobic decolorization reaction remarkably. An attempt was made to identify the metabolites formed in anaerobic process by using high performance liquid chromatography (HPLC) and UV-VIS spectrophotometry. A plate assay was performed for the detection of dominant decolorizing bacteria. Only a few bacterial colonies with high clearing zones (decolorization zones) were found. The results showed that under anaerobic condition RB-5 molecules were reduced and aromatic amines were generated. The aromatic amine metabolite was partly removed in subsequent aerobic bio-treatment. It was possible to achieve more than 90% decolorization and approximately 46% reduction in amine metabolite concentration through two-stage anaerobic-aerobic treatment after a reaction period of 2 days.

  2. Methanogenic degradation of lignin-derived monoaromatic compounds by microbial enrichments from rice paddy field soil

    OpenAIRE

    Souichiro Kato; Kanako Chino; Naofumi Kamimura; Eiji Masai; Isao Yumoto; Yoichi Kamagata

    2015-01-01

    Anaerobic degradation of lignin-derived aromatics is an important metabolism for carbon and nutrient cycles in soil environments. Although there are some studies on degradation of lignin-derived aromatics by nitrate- and sulfate-reducing bacteria, knowledge on their degradation under methanogenic conditions are quite limited. In this study, methanogenic microbial communities were enriched from rice paddy field soil with lignin-derived methoxylated monoaromatics (vanillate and syringate) and t...

  3. Aerobic cometabolic degradation of chlorinated ethenes in a two step system

    NARCIS (Netherlands)

    Sipkema, EM; Mocoroa, J; deKoning, W; Vlieg, JETV; Ganzeveld, KJ; Beenackers, AACM; Janssen, DB

    1997-01-01

    Many of the chlorinated ethenes (CEs) can aerobically only be converted by cometabolism, a process in which the organism converts the contaminant that it cannot use for growth as a result of the nonspecificity of one of its enzymes. For bioremediation systems, the methanotroph Methylosinus trichospo

  4. Modeling Aerobic Carbon Source Degradation Processes using Titrimetric Data and Combined Respirometric-Titrimetric Data: Structural and Practical Identifiability

    DEFF Research Database (Denmark)

    Gernaey, Krist; Petersen, B.; Dochain, D.;

    2002-01-01

    considerably more for dextrose than for acetate degradation models. Noteworthy is the finding that the half-saturation substrate concentrations can be different depending on whether they are estimated from respirometric or titrimetric data. Moreover, this difference appears to be dependent on the carbon source...... the initial substrate concentration S-S(O) is known. The values found correspond to values reported in literature, but, interestingly, also seem able to reflect the occurrence of storage processes when pulses of acetate and dextrose are added. (C) 2002 Wiley Periodicals, Inc.......The structural and practical identifiability of a model for description of respirometric-titrimetric data derived from aerobic batch substrate degradation experiments of a CxHyOz carbon source with activated sludge was evaluated. The model processes needed to describe titrimetric data included...

  5. Microbial degradation of furanic compounds: biochemistry, genetics, and impact

    NARCIS (Netherlands)

    Wierckx, N.; Koopman, F.; Ruijssenaars, H.J.; De Winde. J.H.

    2011-01-01

    Microbial metabolism of furanic compounds, especially furfural and 5-hydroxymethylfurfural (HMF), is rapidly gaining interest in the scientific community. This interest can largely be attributed to the occurrence of toxic furanic aldehydes in lignocellulosic hydrolysates. However, these compounds ar

  6. Metabolism of 2-Chloro-4-Nitroaniline via Novel Aerobic Degradation Pathway by Rhodococcus sp. Strain MB-P1

    Science.gov (United States)

    Khan, Fazlurrahman; Pal, Deepika; Vikram, Surendra; Cameotra, Swaranjit Singh

    2013-01-01

    2-chloro-4-nitroaniline (2-C-4-NA) is used as an intermediate in the manufacture of dyes, pharmaceuticals, corrosion inhibitor and also used in the synthesis of niclosamide, a molluscicide. It is marked as a black-listed substance due to its poor biodegradability. We report biodegradation of 2-C-4-NA and its pathway characterization by Rhodococcus sp. strain MB-P1 under aerobic conditions. The strain MB-P1 utilizes 2-C-4-NA as the sole carbon, nitrogen, and energy source. In the growth medium, the degradation of 2-C-4-NA occurs with the release of nitrite ions, chloride ions, and ammonia. During the resting cell studies, the 2-C-4-NA-induced cells of strain MB-P1 transformed 2-C-4-NA stoichiometrically to 4-amino-3-chlorophenol (4-A-3-CP), which subsequently gets transformed to 6-chlorohydroxyquinol (6-CHQ) metabolite. Enzyme assays by cell-free lysates prepared from 2-C-4-NA-induced MB-P1 cells, demonstrated that the first enzyme in the 2-C-4-NA degradation pathway is a flavin-dependent monooxygenase that catalyzes the stoichiometric removal of nitro group and production of 4-A-3-CP. Oxygen uptake studies on 4-A-3-CP and related anilines by 2-C-4-NA-induced MB-P1 cells demonstrated the involvement of aniline dioxygenase in the second step of 2-C-4-NA degradation. This is the first report showing 2-C-4-NA degradation and elucidation of corresponding metabolic pathway by an aerobic bacterium. PMID:23614030

  7. Metabolism of 2-chloro-4-nitroaniline via novel aerobic degradation pathway by Rhodococcus sp. strain MB-P1.

    Directory of Open Access Journals (Sweden)

    Fazlurrahman Khan

    Full Text Available 2-chloro-4-nitroaniline (2-C-4-NA is used as an intermediate in the manufacture of dyes, pharmaceuticals, corrosion inhibitor and also used in the synthesis of niclosamide, a molluscicide. It is marked as a black-listed substance due to its poor biodegradability. We report biodegradation of 2-C-4-NA and its pathway characterization by Rhodococcus sp. strain MB-P1 under aerobic conditions. The strain MB-P1 utilizes 2-C-4-NA as the sole carbon, nitrogen, and energy source. In the growth medium, the degradation of 2-C-4-NA occurs with the release of nitrite ions, chloride ions, and ammonia. During the resting cell studies, the 2-C-4-NA-induced cells of strain MB-P1 transformed 2-C-4-NA stoichiometrically to 4-amino-3-chlorophenol (4-A-3-CP, which subsequently gets transformed to 6-chlorohydroxyquinol (6-CHQ metabolite. Enzyme assays by cell-free lysates prepared from 2-C-4-NA-induced MB-P1 cells, demonstrated that the first enzyme in the 2-C-4-NA degradation pathway is a flavin-dependent monooxygenase that catalyzes the stoichiometric removal of nitro group and production of 4-A-3-CP. Oxygen uptake studies on 4-A-3-CP and related anilines by 2-C-4-NA-induced MB-P1 cells demonstrated the involvement of aniline dioxygenase in the second step of 2-C-4-NA degradation. This is the first report showing 2-C-4-NA degradation and elucidation of corresponding metabolic pathway by an aerobic bacterium.

  8. Metabolism of 2-chloro-4-nitroaniline via novel aerobic degradation pathway by Rhodococcus sp. strain MB-P1.

    Science.gov (United States)

    Khan, Fazlurrahman; Pal, Deepika; Vikram, Surendra; Cameotra, Swaranjit Singh

    2013-01-01

    2-chloro-4-nitroaniline (2-C-4-NA) is used as an intermediate in the manufacture of dyes, pharmaceuticals, corrosion inhibitor and also used in the synthesis of niclosamide, a molluscicide. It is marked as a black-listed substance due to its poor biodegradability. We report biodegradation of 2-C-4-NA and its pathway characterization by Rhodococcus sp. strain MB-P1 under aerobic conditions. The strain MB-P1 utilizes 2-C-4-NA as the sole carbon, nitrogen, and energy source. In the growth medium, the degradation of 2-C-4-NA occurs with the release of nitrite ions, chloride ions, and ammonia. During the resting cell studies, the 2-C-4-NA-induced cells of strain MB-P1 transformed 2-C-4-NA stoichiometrically to 4-amino-3-chlorophenol (4-A-3-CP), which subsequently gets transformed to 6-chlorohydroxyquinol (6-CHQ) metabolite. Enzyme assays by cell-free lysates prepared from 2-C-4-NA-induced MB-P1 cells, demonstrated that the first enzyme in the 2-C-4-NA degradation pathway is a flavin-dependent monooxygenase that catalyzes the stoichiometric removal of nitro group and production of 4-A-3-CP. Oxygen uptake studies on 4-A-3-CP and related anilines by 2-C-4-NA-induced MB-P1 cells demonstrated the involvement of aniline dioxygenase in the second step of 2-C-4-NA degradation. This is the first report showing 2-C-4-NA degradation and elucidation of corresponding metabolic pathway by an aerobic bacterium. PMID:23614030

  9. About the order in aerobic heterotrophic microbial communities from hydrocarbon-contaminated sites

    NARCIS (Netherlands)

    Becker, P.M.

    1999-01-01

    The organizational structure of communities of aerobic heterotrophic bacteria was studied by means of physiological and molecular typing of the members of arbitrary samples of isolates, ASsI. The isolate sample assay (ISA) was applied to three different hydrocarbon-polluted sites: a dry windrow pile

  10. Degradation of Reactive Black 5 dye using anaerobic/aerobic membrane bioreactor (MBR) and photochemical membrane reactor

    International Nuclear Information System (INIS)

    Three different types of advance treatment methods were evaluated for the degradation of Reactive Black 5 (RB5). The performance of two stage anaerobic SBR-aerobic MBR, anaerobic MBR with immobilized and suspended biocells and an integrated membrane photocatalytic reactor (MPR) using slurry UV/TiO2 system were investigated. The results suggest that, nearly 99.9% color removal and 80-95% organic COD and TOC removal can be achieved using different reactor systems. Considering the Taiwan EPA effluent standard discharge criteria for COD/TOC, the degree of treatment achieved by combining the anaerobic-aerobic system was found to be acceptable. Anew, Bacilluscereus, high color removal bacterium was isolated from Anaerobic SBR. Furthermore, when this immobilized into PVA-calcium alginate pellets, and suspended in the anaerobic MBR was able to achieve high removal efficiencies, similar to the suspended biocells system. However, the immobilized cell Anaerobic MBR was found to be more advantageous, due to lower fouling rates in the membrane unit. Results from slurry type MPR system showed that this system was capable of mineralizing RB5 dyes with faster degradation rate as compared to other systems. The reactor was also able to separate the catalyst effectively and perform efficiently without much loss of catalyst activity.

  11. Laboratory simulation of the successive aerobic and anaerobic degradation of oil products in oil-contaminated high-moor peat

    Science.gov (United States)

    Tolpeshta, I. I.; Trofimov, S. Ya.; Erkenova, M. I.; Sokolova, T. A.; Stepanov, A. L.; Lysak, L. V.; Lobanenkov, A. M.

    2015-03-01

    A model experiment has been performed on the successive aerobic and anaerobic degradation of oil products in samples of oil-contaminated peat sampled from a pine-subshrub-sphagnum bog near the Sutormin oilfield pipeline in the Yamal-Nenets autonomous district. During the incubation of oil-contaminated peat with lime and mineral fertilizers under complete flooding, favorable conditions are created for the aerobic oxidation of oil products at the beginning of the experiment and, as the redox potential decreases, for the anaerobic degradation of oil products conjugated with the reduction of N5+ and S+6 and methanogenesis. From the experimental data on the dynamics of the pH; Eh; and the NO{3/-}, NO{2/-}, and SO{4/2-} concentrations in the liquid phase of the samples, it has been found that denitrifiers significantly contributed to the biodegradation of oil products under the experimental conditions. After the end of the experiment, the content of oil products in the contaminated samples decreased by 21-26%.

  12. Oil degrading microbial population along the Texas coast

    International Nuclear Information System (INIS)

    The quantity of petroleum degrading bacteria in the coastal waters of Texas was evaluated to determine if the number varies according to the oil contamination history of the sampling sites. In most of the collected water samples, saturate and polycyclic aromatic hydrocarbon (PAH) degraders exist, regardless of the site's contamination history. Saturate degraders are more abundant than PAH degraders and there may be a correlation between the quantity of hydrocarbon degraders at a given site and its proximity to anthropogenic petroleum activities. But the stronger direct association seems to be between the total heterotroph numbers and the hydrocarbon degrader numbers. Extensive studies are still underway to confirm these results. 22 refs., 1 tab., 4 figs

  13. Microbial degradation of alpha-cypermethrin in soil by compound-specific stable isotope analysis.

    Science.gov (United States)

    Xu, Zemin; Shen, Xiaoli; Zhang, Xi-Chang; Liu, Weiping; Yang, Fangxing

    2015-09-15

    To assess microbial degradation of alpha-cypermethrin in soil, attenuation of alpha-cypermethrin was investigated by compound-specific stable isotope analysis. The variations of the residual concentrations and stable carbon isotope ratios of alpha-cypermethrin were detected in unsterilized and sterilized soils spiked with alpha-cypermethrin. After an 80 days' incubation, the concentrations of alpha-cypermethrin decreased to 0.47 and 3.41 mg/kg in the unsterilized soils spiked with 2 and 10 mg/kg, while those decreased to 1.43 and 6.61 mg/kg in the sterilized soils. Meanwhile, the carbon isotope ratios shifted to -29.14 ± 0.22‰ and -29.86 ± 0.33‰ in the unsterilized soils spiked with 2 and 10 mg/kg, respectively. The results revealed that microbial degradation contributed to the attenuation of alpha-cypermethrin and induced the carbon isotope fractionation. In order to quantitatively assess microbial degradation, a relationship between carbon isotope ratios and residual concentrations of alpha-cypermethrin was established according to Rayleigh equation. An enrichment factor, ϵ = -1.87‰ was obtained, which can be employed to assess microbial degradation of alpha-cypermethrin. The significant carbon isotope fractionation during microbial degradation suggests that CSIA is a proper approach to qualitatively detect and quantitatively assess the biodegradation during attenuation process of alpha-cypermethrin in the field.

  14. Microbial Degradation of Polycyclic Aromatic Hydrocarbons and Characterization of Bacteria

    Science.gov (United States)

    Tikilili, P. V.; Chirwa, E. M. N.

    2010-01-01

    Biodegradation of polycyclic aromatic hydrocarbons was studied. Naphthalene was used as a model compound to represent these compounds. Low initial concentrations of naphthalene in a range of 30-60 mg/L were completely degraded after incubation for 15 hrs by consortia from a landfill soil while consortia from minewater took more that 29 hrs to reach complete degradation.

  15. Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil

    DEFF Research Database (Denmark)

    Johnsen, Anders R; de Lipthay, Julia R; Sørensen, Søren J;

    2006-01-01

    Diffuse pollution with polycyclic aromatic hydrocarbons (PAHs) of topsoil in urban regions has caused increasing concerns in recent years. We simulated diffuse pollution of soil in microcosms by spiking sandy topsoil (A-horizon) and coarse, mineral subsoil (C-horizon) with street dust (PM63......) isolated from municipal street sweepings from central Copenhagen. The microbial communities adapted to PAH degradation in microcosms spiked with street dust in both A-horizon and C-horizon soils, in spite of low PAH-concentrations. The increased potential for PAH degradation was demonstrated on several...... levels: by slowly diminishing PAH-concentrations, increased mineralization of 14C-PAHs, increasing numbers of PAH degraders and increased prevalence of nah and pdo1 PAH degradation genes, i.e. the microbial communities quickly adapted to PAH degradation. Three- and 4-ring PAHs from the street dust were...

  16. DECOLORIZATION AND BIOLOGICAL DEGRADATION OF AZO DYE REACTIVE RED2 BY ANAEROBIC/AEROBIC SEQUENTIAL PROCESS

    OpenAIRE

    A. Naimabadi ، H. Movahedian Attar ، A. Shahsavani

    2009-01-01

    This study investigates the anaerobic treatability of reactive Red2 in an anaerobic/aerobic sequential process. Laboratory scale anaerobic baffled reactor and fixed activated sludge reactor were operated at different organic loadings and hydraulic retention times. The effects of shock dye concentration on the chemical oxygen demand and color removal efficiencies were investigated in the anaerobic baffled reactor. The effect of hydraulic retention time on the color and chemical oxygen demand r...

  17. Mechanism and kinetics of organic matter degradation based on particle structure variation during pig manure aerobic composting.

    Science.gov (United States)

    Ge, Jinyi; Huang, Guangqun; Huang, Jing; Zeng, Jianfei; Han, Lujia

    2015-07-15

    Characterization of the dynamic structure of composting particles may facilitate our understanding of the mechanisms of organic matter degradation during pig manure-wheat straw aerobic composting. In this study, changes in the size, shape, pores, chemical compositions, and crystal structures of pig manure particles during composting were investigated. The results showed that the median diameter (D50) decreased exponentially, while the particle aspect ratio and sphericity were unchanged, suggesting that particles were degraded uniformly along different radial directions. Pores had a mean diameter of 15-30 μm and were elliptical. The particle porosity increased linearly mainly because of hemicellulose degradation. Furthermore, the influence of particle structure variation on the first order rate constant (k) of organic matter degradation was corrected, which may facilitate the optimization of operation conditions. The k value was proportional to the reciprocal of D50 according to the specific surface area of particles, and it decreased with increased porosity due to the stabilized chemical compositions and crystal structures of particles. However, the applicability of these data to other composting materials should be verified. PMID:25781372

  18. Deciphering the genetic determinants for aerobic nicotinic acid degradation: the nic cluster from Pseudomonas putida KT2440.

    Science.gov (United States)

    Jiménez, José I; Canales, Angeles; Jiménez-Barbero, Jesús; Ginalski, Krzysztof; Rychlewski, Leszek; García, José L; Díaz, Eduardo

    2008-08-12

    The aerobic catabolism of nicotinic acid (NA) is considered a model system for degradation of N-heterocyclic aromatic compounds, some of which are major environmental pollutants; however, the complete set of genes as well as the structural-functional relationships of most of the enzymes involved in this process are still unknown. We have characterized a gene cluster (nic genes) from Pseudomonas putida KT2440 responsible for the aerobic NA degradation in this bacterium and when expressed in heterologous hosts. The biochemistry of the NA degradation through the formation of 2,5-dihydroxypyridine and maleamic acid has been revisited, and some gene products become the prototype of new types of enzymes with unprecedented molecular architectures. Thus, the initial hydroxylation of NA is catalyzed by a two-component hydroxylase (NicAB) that constitutes the first member of the xanthine dehydrogenase family whose electron transport chain to molecular oxygen includes a cytochrome c domain. The Fe(2+)-dependent dioxygenase (NicX) converts 2,5-dihydroxypyridine into N-formylmaleamic acid, and it becomes the founding member of a new family of extradiol ring-cleavage dioxygenases. Further conversion of N-formylmaleamic acid to formic and maleamic acid is catalyzed by the NicD protein, the only deformylase described so far whose catalytic triad is similar to that of some members of the alpha/beta-hydrolase fold superfamily. This work allows exploration of the existence of orthologous gene clusters in saprophytic bacteria and some pathogens, where they might stimulate studies on their role in virulence, and it provides a framework to develop new biotechnological processes for detoxification/biotransformation of N-heterocyclic aromatic compounds.

  19. Effect of microbial inoculant or molasses on fermentative quality and aerobic stability of sawdust-based spent mushroom substrate.

    Science.gov (United States)

    Kim, J S; Lee, Y H; Kim, Y I; Ahmadi, F; Oh, Y K; Park, J M; Kwak, W S

    2016-09-01

    In the first experiment, the effect of two novel Lactobacillus plantarum strains was studied on the fermentation of spent mushroom substrate (SMS) through 10d of ensiling. Based on lactic acid production and lactic acid bacteria population, L. plantarum KU5 was identified as the best strain for fermentation with a 5-L bag silo. Spent mushroom substrate was ensiled with 0.5% (v/w) L. plantarum KU5 without or with 5% molasses. Silages treated with microbial inoculant and molasses had the lowest pH and the highest fermentative odors. In a second set of experiments similar to the above 5-L silo study, the simultaneous application of L. plantarum KU5 inoculant and molasses to 80-L silos improved fermentability and aerobic stability of SMS silages. For similar treatment using ton-bag silos, aerobic stability decreased and NH3-N content increased dramatically. In conclusion, sawdust-based SMS for animal use was successfully ensiled with L. plantarum KU5 inoculant and molasses. PMID:27240234

  20. Microbially influenced corrosion of stainless steels by aerobic bacteria; Kokisei saikin no kanyoshita sutenresu ko no biseibutsu fushoku

    Energy Technology Data Exchange (ETDEWEB)

    Amaya, H.; Miyuki, H. [Sumitomo Metal Inductries Ltd., Osaka (Japan). Corporate Research and Development Lab.

    1996-03-20

    Influence of microorganisms on the corrosion of metals has been recognized since Kuhr proposed the hypothesis of corrosion promotion due to so called hydrogen double electrode when hydrogen formed in corrosion reaction of steel is used by anaerobic bacteria. Corrosion of metals caused by the influence of such type of microorganisms is known as Microbially influenced corrosion (MIC), and recently is paid attention specially in Europe and America. These recent years, research on MIC is showing active trend even in Japan. As for the research subjects of MIC, the example of corrosion promotion of carbon steel by sulfate reducing bacteria (SRB) in anaerobic environment is paid attention conventionally. Further, at present, effect of general type of aerobic heterotrophic bacteria on the corrosion of steel is paid attention and research is carried out actively. In this report, effect of aerobic heterotrophic bacteria on the corrosion of stainless steel is introduced focusing to the authors knowhow regarding the ennoblement phenomena of corrosion potential of stainless steel in natural sea water. 44 refs., 10 figs., 3 tabs.

  1. Microbial Community Profiling of Biodegradable Municipal Solid Waste Treatments : Aerobic Composting and Anaerobic Digestion

    OpenAIRE

    Yu, Dan

    2014-01-01

    An enormous quantity of solid waste is generated annually all over the world. Solid waste can be divided into three main categories: municipal waste, industrial waste and agricultural waste. The focus of the research presented in this thesis was on the biodegradable fraction of municipal solid waste (MSW), and particularly on the biowaste and sewage sludge generated in the Nordic countries. In general, there are two major options for processing biodegradable MSW in a sustainable manner: aerob...

  2. New insights into the genetic and metabolic diversity of thiocyanate-degrading microbial consortia.

    Science.gov (United States)

    Watts, Mathew P; Moreau, John W

    2016-02-01

    Thiocyanate is a common contaminant of the gold mining and coal coking industries for which biological degradation generally represents the most viable approach to remediation. Recent studies of thiocyanate-degrading bioreactor systems have revealed new information on the structure and metabolic activity of thiocyanate-degrading microbial consortia. Previous knowledge was limited primarily to pure-culture or co-culture studies in which the effects of linked carbon, sulfur and nitrogen cycling could not be fully understood. High throughput sequencing, DNA fingerprinting and targeted gene amplification have now elucidated the genetic and metabolic diversity of these complex microbial consortia. Specifically, this has highlighted the roles of key consortium members involved in sulfur oxidation and nitrification. New insights into the biogeochemical cycling of sulfur and nitrogen in bioreactor systems allow tailoring of the microbial metabolism towards meeting effluent composition requirements. Here we review these rapidly advancing studies and synthesize a conceptual model to inform new biotechnologies for thiocyanate remediation. PMID:26596573

  3. Determining potential for microbial atrazine degradation in agricultural drainage ditches

    Science.gov (United States)

    Passage of agricultural runoff through vegetated drainage ditches has been shown to reduce the amount of pesticides, such as atrazine, exiting agricultural watersheds. Previous studies found that microbial communities in soil from fields treated with atrazine display enhanced rates of atrazine degr...

  4. Performance of microbial phytases for gastric inositol phosphate degradation

    DEFF Research Database (Denmark)

    Nielsen, Anne Veller Friis; Nyffenegger, Christian; Meyer, Anne S.

    2015-01-01

    Microbial phytases catalyze dephosphorylation of phytic acid, thereby potentially releasing chelated iron and improving human iron absorption from cereal-based diets. For this catalysis to take place in vivo, the phytase must be robust to low pH and proteolysis in the gastric ventricle. This study...

  5. Microbial urea-formaldehyde degradation involves a new enzyme, methylenediurease.

    Science.gov (United States)

    Jahns, T; Schepp, R; Siersdorfer, C; Kaltwasser, H

    1998-01-01

    The enzymic mechanism of metabolization of urea-formaldehyde condensation products (methyleneureas; MU) and the fate of the degradation products ammonium, urea and formaldehyde were studied in bacteria isolated from garden soil, which were able to use methyleneureas as the sole source of nitrogen for growth. An organism identified as Ochrobactrum anthropi completely degraded methylenediurea (MDU) and dimethylenetriurea (DMTU) to urea, ammonia, formaldehyde and carbon dioxide. An enzyme designated as methylenediurease (methylenediurea deiminase; MDUase) was responsible for the degradation of both MDU and DMTU as well as higher polymerized MU. Growth on MU as the nitrogen source specifically induced the synthesis of this enzyme, which seems to be located in the periplasm of the bacterium. Under these growth conditions, urease as well as NAD-specific formaldehyde and formiate dehydrogenase were expressed to high levels, efficiently using the products of MU degradation, and high-affinity transport systems for urea and ammonia were synthesized scavenging the environment for these products. PMID:10526991

  6. Simulation Biomass Effecting On Microbial Fuel Cell Electricity Properties and Substrate Degradation

    OpenAIRE

    Jinxiang Fu; Xiangxin Xue; Yulan Tang; Jiao Wang; Xingguan Ma

    2013-01-01

    Microbial fuel cell (MFC) mathematical model was established with suspended microorganisms, biomass on the electrode material, soluble chemical substrates and intermediary. By simulating the process of the substrate degradation, biomass growth and the electric current production process, With different initial biomass concentration, suspended microbial biomass and biomass attaching on electrode varing with time,current and charge varing with time,substrate concentration varing with time and m...

  7. Degradation of chlorophenols by a defined mixed microbial community.

    OpenAIRE

    E. Schmidt; Hellwig, M.; Knackmuss, H J

    1983-01-01

    Synthetic sewage containing phenol, acetone, and alkanols plus 4-chlorophenol or a mixture of isomeric chlorophenols is completely degraded by a defined mixed culture with Pseudomonas sp. strain B13 as a chlorocatechol-dissimilating member of the community. Total degradation of the organic carbon was indicated by release of stoichiometric amounts of chloride and low content of dissolved organic carbon in the cell-free effluents. During adaptation to high loads of chlorophenols the initial met...

  8. Aerobic degradation of highly chlorinated polychlorobiphenyls by a marine bacterium, Pseudomonas CH07

    Digital Repository Service at National Institute of Oceanography (India)

    De, J.; Ramaiah, N.; Sarkar, A.

    and the other coplanar tetrachloro congener CB-77 was degraded by more than 40% within 40 hours by this microorganism. Apparently absence of bphC in this bacterium led to proposition of different mechanism of PCBs degradation. KEY WORDS: Pseudomonas CH07...

  9. Incomplete aerobic degradation of the antidiabetic drug Metformin and identification of the bacterial dead-end transformation product Guanylurea.

    Science.gov (United States)

    Trautwein, Christoph; Kümmerer, Klaus

    2011-10-01

    Active pharmaceutical ingredients as well as personal care products are detected in increasing prevalence in different environmental compartments such as surface water, groundwater and soil. Still little is known about the environmental fate of these substances. The type II antidiabetic drug Metformin has already been detected in different surface waters worldwide, but concentrations were significantly lower than the corresponding predicted environmental concentration (PEC). In human and mammal metabolism so far no metabolites of Metformin have been identified, so the expected environmental concentrations should be very high. To assess the aerobic biodegradability of Metformin and the possible formation of degradation products, three Organisation of Economic Cooperation and Development (OECD) test series were performed in the present study. In the Closed Bottle test (OECD 301 D), a screening test that simulates the conditions of an environmental surface water compartment, Metformin was classified as not readily biodegradable (no biodegradation). In the Manometric Respiratory test (OEDC 301 F) working with high bacterial density, Metformin was biodegraded in one of three test bottles to 48.7% and in the toxicity control bottle to 57.5%. In the Zahn-Wellens test (OECD 302 B) using activated sludge, Metformin was biodegraded in both test vessels to an extent of 51.3% and 49.9%, respectively. Analysis of test samples by high performance liquid chromatography coupled to multiple stage mass spectrometry (HPLC-MS(n)) showed in the tests vessels were biodegradation was observed full elimination of Metformin and revealed Guanylurea (Amidinourea, Dicyandiamidine) as single and stable aerobic bacterial degradation product. In another Manometric Respiratory test Guanylurea showed no more transformation. Photodegradation of Guanylurea was also negative. A first screening in one of the greatest sewage treatment plant in southern Germany found Metformin with high concentrations

  10. Autochthonous microbial community associated with pine needle forest litterfall influences its degradation under natural environmental conditions.

    Science.gov (United States)

    Mahajan, Rishi; Nikitina, Anna; Litti, Yury; Nozhevnikova, Alla; Goel, Gunjan

    2016-07-01

    The slow natural degradation of chir pine (Pinus roxburghii) needle litterfall and its accumulation on forest floors have been attributed to its lignocellulosic complexities of the biomass. The present study offers a microbiological insight into the role of autochthonous microflora associated with pine needle litterfall in its natural degradation. The denaturing gradient gel electrophoresis (DGGE) fingerprinting indicated actinomycetes (Saccharomonospora sp., Glycomyces sp., Agrococcus sp., Leifsonia sp., Blastocatella sp., and Microbacterium sp.) as a dominant microbial community associated with pine needle litterfall with the absence of fungal decomposers. On exclusion of associated autochthonous microflora from pine litterfall resulted in colonization by decomposer fungi identified as Penicillium chrysogenum and Aspergillus sp., which otherwise failed to colonize the litterfall under natural conditions. The results, therefore, indicated that the autochthonous microbial community of pine needle litterfall (dominated by actinomycetes) obstructs the colonization of litter-degrading fungi and subsequently hinders the overall process of natural degradation of litterfall. PMID:27317052

  11. Aerobic degradation of methyl tert-butyl ether by a Proteobacteria strain in a closed culture system

    Institute of Scientific and Technical Information of China (English)

    ZHONG Wei-hong; CHEN Jian-meng; LU Zheng; CHEN Dong-zhi; CHEN Xiao

    2007-01-01

    The contamination of methyl tert-butyl ether (MTBE) in underground waters has become a widely concerned problem all over the world. In this study, a novel closed culture system with oxygen supplied by H2O2 was introduced for MTBE aerobic biodegradation. After 7 d, almost all MTBE was degraded by a pure culture, a member of β-Proteobacteria named as PM1, in a closed system with oxygen supply, while only 40% MTBE was degraded in one without oxygen supply. Dissolved oxygen (DO) levels of the broth in closed systems respectively with and without H2O2 were about 5-6 and 4 mg/L. Higher DO may improve the activity of monooxygemase, which is the key enzyme of metabolic pathway from MTBE to tert-butyl alcohol and finally to CO2, and may result in the increase of the degrading activity of PM1 cell. The purge and trap GC-MS result of the broth in closed systems showed that tert-butyl alcohol,isopronol and acetone were the main intermediate products.

  12. Cometabolic microbial degradation of trichloroethylene in the presence of toluene

    Institute of Scientific and Technical Information of China (English)

    SUI Hong; LI Xin-Gang; XU Shi-Min1

    2004-01-01

    Trichloroethylene(TCE), a common groundwater pollutant, was cometabolized by microorganisms in the presence of toluene as a growth substrate. The effect of concentrations of toluene and TCE and temperature on biodegradation was discussed. Acclimated microorganisms degraded TCE after a lag period of 5 to 22 h depending on toluene concentrations. Approximately 60%, 90% and 64% of TCE were degraded at toluene to TCE concentration ratios of 23:1, 115:1 and 230:1, respectively. At a TCE concentration of 1.46 μg/ml, 80% of TCE and 98.4% of toluene were removed. But less degradation of TCE and toluene was observed when TCE concentration was above 48.8 μg/ml. The lag time of TCE decreased and the TCE biodegradation rates increased with the increase of temperature.

  13. Field degradation of aminopyralid and clopyralid and microbial community response to application in Alaskan soils.

    Science.gov (United States)

    Tomco, Patrick L; Duddleston, Khrystyne N; Schultz, Emily Jo; Hagedorn, Birgit; Stevenson, Timothy J; Seefeldt, Steven S

    2016-02-01

    High-latitude regions experience unique conditions that affect the degradation rate of agrochemicals in the environment. In the present study, data collected from 2 field sites in Alaska, USA (Palmer and Delta) were used to generate a kinetic model for aminopyralid and clopyralid degradation and to describe the microbial community response to herbicide exposure. Field plots were sprayed with herbicides and sampled over the summer of 2013. Quantification was performed via liquid chromatrography/tandem mass spectrometry, and microbial diversity was assessed via next-generation sequencing of bacterial 16S ribosomal ribonucleic acid (rRNA) genes. Both compounds degraded rapidly via pseudo-first-order degradation kinetics between 0 d and 28 d (t1/2  = 9.1-23.0 d), and then degradation slowed thereafter through 90 d. Aminopyralid concentration was 0.048 μg/g to 0.120 μg/g at 90 d post application, whereas clopyralid degraded rapidly at the Palmer site but was recovered in Delta soil at a concentraction of 0.046 μg/g. Microbial community diversity was moderately impacted by herbicide treatment, with the effect more pronounced at Delta. These data predict reductions in crop yield when sensitive plants (potatoes, tomatoes, marigolds, etc.) are rotated onto treated fields. Agricultural operations in high-latitude regions, both commercial and residential, rely heavily on cultivation of such crops and care must be taken when rotating.

  14. Microbial degradation of alpha-cypermethrin in soil by compound-specific stable isotope analysis

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Zemin [MOE Key Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058 (China); Shen, Xiaoli [MOE Key Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058 (China); Department of Environmental Engineering, Quzhou University, Quzhou 324000 (China); Zhang, Xi-Chang [Laboratory for Teaching in Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058 (China); Liu, Weiping [MOE Key Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058 (China); Yang, Fangxing, E-mail: fxyang@zju.edu.cn [MOE Key Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058 (China); Department of Effect-Directed Analysis, Helmholtz Center for Environmental Research – UFZ, Leipzig 04318 (Germany)

    2015-09-15

    Highlights: • Alpha-cypermethrin (α-CP) can be degraded by microorganisms in soil. • Biodegradation of α-CP resulted in carbon isotope fractionation. • A relationship was found between carbon isotope ratios and concentrations of α-CP. • An enrichment factor ϵ of α-CP was determined as −1.87‰. • CSIA is applicable to assess biodegradation of α-CP. - Abstract: To assess microbial degradation of alpha-cypermethrin in soil, attenuation of alpha-cypermethrin was investigated by compound-specific stable isotope analysis. The variations of the residual concentrations and stable carbon isotope ratios of alpha-cypermethrin were detected in unsterilized and sterilized soils spiked with alpha-cypermethrin. After an 80 days’ incubation, the concentrations of alpha-cypermethrin decreased to 0.47 and 3.41 mg/kg in the unsterilized soils spiked with 2 and 10 mg/kg, while those decreased to 1.43 and 6.61 mg/kg in the sterilized soils. Meanwhile, the carbon isotope ratios shifted to −29.14 ± 0.22‰ and −29.86 ± 0.33‰ in the unsterilized soils spiked with 2 and 10 mg/kg, respectively. The results revealed that microbial degradation contributed to the attenuation of alpha-cypermethrin and induced the carbon isotope fractionation. In order to quantitatively assess microbial degradation, a relationship between carbon isotope ratios and residual concentrations of alpha-cypermethrin was established according to Rayleigh equation. An enrichment factor, ϵ = −1.87‰ was obtained, which can be employed to assess microbial degradation of alpha-cypermethrin. The significant carbon isotope fractionation during microbial degradation suggests that CSIA is a proper approach to qualitatively detect and quantitatively assess the biodegradation during attenuation process of alpha-cypermethrin in the field.

  15. Limitations of microbial hydrocarbon degradation at the Amon mud volcano (Nile deep-sea fan)

    NARCIS (Netherlands)

    Felden, J.; Lichtschlag, A.; Wenzhöfer, F.; de Beer, D.; Feseker, T.; Pop Ristova, P.; de Lange, G.; Boetius, A.

    2013-01-01

    The Amon mud volcano (MV), located at 1250m water depth on the Nile deep-sea fan, is known for its active emission of methane and non-methane hydrocarbons into the hydrosphere. Previous investigations showed a low efficiency of hydrocarbon-degrading anaerobic microbial communities inhabiting the Amo

  16. Methyltert-butyl Ether (MTBE Degradation by a Microbial Consortium

    Directory of Open Access Journals (Sweden)

    S. B. Mortazavi

    2005-01-01

    Full Text Available Methyl tert-butyl ether (MTBE is added to reformulated gasoline to meet the 1990 Clean Air Act directives. Widespread use of MTBE in gasoline has resulted in groundwater contamination. Because of its undesirable effects on drinking water and ecologically harmful effects, MTBE removal has become a public health and environmental concern. In this study, we have isolated a mixed bacterial culture which is capable of degrading the MTBE as a sole carbon and energy source. This consortium was developed from mixed urban and petrochemical activated sludge after 4 month's enrichment. Enrichment was conducted in batch reactor, fitted with a screw cap and butyl rubber septum. MTBE concentration was measured in head space by gas chromatography. Degradation was determined by MTBE removal. MTBE biodegradation was depended to Dissolved Oxygen (DO concentration and not affected by the changes in concentration of trace element solution or other stimulator Substances. Degradation rates were nearly 1.478 mg MTBE h-1 g-1 (wet biomass and didn't change with MTBE concentration (up 500 mg L-1.

  17. Improving phosphorus removal in aerobic granular sludge processes through selective microbial management.

    Science.gov (United States)

    Henriet, Olivier; Meunier, Christophe; Henry, Paul; Mahillon, Jacques

    2016-07-01

    This study aimed to improve phosphorus removal in aerobic granular sludge sequential batch reactors (AGS-SBR) by a differential selection of the granules containing the highest proportion of phosphate accumulating organisms (PAOs). The abundance of PAOs in granules with different density was analyzed by PCR-DGGE, pyrosequencing and qPCR. Dense granules contained a higher proportion of Candidatus Accumulibacter (PAO) with a 16S rRNA gene frequency up to 45%. Starting with an AGS-SBR with low height/diameter ratio performing unstable P removal, two strategies of biomass removal were assessed. First, a high selective pressure (short settling time) was applied and second, an increase of the settling time was combined with a homogeneous purge of the sludge bed. The first strategy resulted in a reduction of P removal efficiency while the second improved and stabilized P removal over 90%. This study offers a new approach of biomass management in AGS-SBR. PMID:27023385

  18. Screening of a microbial consortium for highly simultaneous degradation of lignocellulose and chlorophenols.

    Science.gov (United States)

    Liang, Jiajin; Peng, Xiang; Yin, Dexing; Li, Beiyin; Wang, Dehan; Lin, Yunqin

    2015-08-01

    In this work, spent mushroom substrates were utilized for screening a microbial consortium with highly simultaneous degradation of lignocellulose and chlorophenols. The desired microbial consortium OEM1 was gained through successive cultivation for about 50 generations and its stability of composition was verified by denaturing gradient gel electrophoresis (DGGE) during screening process. It could degrade lignocellulose and chlorophenols at around 50% and 100%, respectively, within 7days. The diversity analysis and the growth characteristics of OEM1 during degradation process were investigated by PCR-DGGE combined with clone and sequence. The results indicated that OEM1 consisted of 31 strains. Proteobacteria and Bacteroidetes were the predominant bacterial groups. The dynamic change of OEM1 illustrated that consortium community structure was effected by pH and substrate alteration and tended to be stable after 6days' cultivation. Furthermore, bacteria (11 strains) and actinomycetes (2 strains) were obtained based on plate isolation and identified via 16S rDNA sequence. PMID:25974352

  19. Study on the aerobic biodegradability and degradation kinetics of 3-NP; 2,4-DNP and 2,6-DNP

    International Nuclear Information System (INIS)

    Highlights: ► We assessed the biodegradability of three nitrophenols using four methods. ► We simulated the degradation kinetics model and estimated relevant parameters. ► We compared the kinetics performances of solo substrates and co-substrates. - Abstract: Four biodegradability tests (BOD5/COD ratio, production of carbon dioxide, relative oxygen uptake rate and relative enzymatic activity) were used to determine the aerobic biodegradability of 3-nitrophenol (3-NP), 2,4-dinitrophenol (2,4-DNP) and 2,6-dinitrophenol (2,6-DNP). Furthermore, biodegradation kinetics of the compounds was investigated in sequencing batch reactors both in the presence of glucose (co-substrate) and with nitrophenol as the sole carbon source. Among the three tested compounds, 3-NP showed the best biodegradability while 2,6-DNP was the most difficult to be biodegraded. The Haldane equation was applied to the kinetic test data of the nitrophenols. The kinetic constants are as follows: the maximum specific degradation rate (Kmax), the saturation constants (KS) and the inhibition constants (KI) were in the range of 0.005–2.98 mg (mgSS d)−1, 1.5–51.9 mg L−1 and 1.8–95.8 mg L−1, respectively. The presence of glucose enhanced the degradation of the nitrophenols at low glucose concentrations. The degradation of 3-NP was found to be accelerated with the increasing of glucose concentrations from 0 to 660 mg L−1. At high (1320–2000 mg L−1) glucose concentrations, the degradation rate of 3-NP was reduced and the Kmax of 3-NP was even lower than the value obtained in the absence of glucose, suggesting that high concentrations of co-substrate could inhibit 3-NP biodegradation. At 2,4-DNP concentration of 30 mg L−1, the Kmax of 2,4-DNP with glucose as co-substrate was about 30 times the value with 2,4-DNP as sole substrate. 2,6-DNP preformed high toxicity in the case of sole carbon source degradation and the kinetic data was hardly obtained.

  20. Study on the aerobic biodegradability and degradation kinetics of 3-NP; 2,4-DNP and 2,6-DNP

    Energy Technology Data Exchange (ETDEWEB)

    She, Zonglian; Xie, Tian; Zhu, Yingjie; Li, Leilei; Tang, Gaifeng [Key Laboratory of Marine Environmental Science and Ecology, Ministry of Education, College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100 (China); Huang, Jian, E-mail: jianhuang666@hotmail.com [Department of Environmental Ecology, College of Marine Life Sciences, Ocean University of China, Qingdao 266003 (China)

    2012-11-30

    Highlights: Black-Right-Pointing-Pointer We assessed the biodegradability of three nitrophenols using four methods. Black-Right-Pointing-Pointer We simulated the degradation kinetics model and estimated relevant parameters. Black-Right-Pointing-Pointer We compared the kinetics performances of solo substrates and co-substrates. - Abstract: Four biodegradability tests (BOD{sub 5}/COD ratio, production of carbon dioxide, relative oxygen uptake rate and relative enzymatic activity) were used to determine the aerobic biodegradability of 3-nitrophenol (3-NP), 2,4-dinitrophenol (2,4-DNP) and 2,6-dinitrophenol (2,6-DNP). Furthermore, biodegradation kinetics of the compounds was investigated in sequencing batch reactors both in the presence of glucose (co-substrate) and with nitrophenol as the sole carbon source. Among the three tested compounds, 3-NP showed the best biodegradability while 2,6-DNP was the most difficult to be biodegraded. The Haldane equation was applied to the kinetic test data of the nitrophenols. The kinetic constants are as follows: the maximum specific degradation rate (K{sub max}), the saturation constants (K{sub S}) and the inhibition constants (K{sub I}) were in the range of 0.005-2.98 mg (mgSS d){sup -1}, 1.5-51.9 mg L{sup -1} and 1.8-95.8 mg L{sup -1}, respectively. The presence of glucose enhanced the degradation of the nitrophenols at low glucose concentrations. The degradation of 3-NP was found to be accelerated with the increasing of glucose concentrations from 0 to 660 mg L{sup -1}. At high (1320-2000 mg L{sup -1}) glucose concentrations, the degradation rate of 3-NP was reduced and the K{sub max} of 3-NP was even lower than the value obtained in the absence of glucose, suggesting that high concentrations of co-substrate could inhibit 3-NP biodegradation. At 2,4-DNP concentration of 30 mg L{sup -1}, the K{sub max} of 2,4-DNP with glucose as co-substrate was about 30 times the value with 2,4-DNP as sole substrate. 2,6-DNP preformed high

  1. Toxicity assessment and microbial degradation of azo dyes.

    Science.gov (United States)

    Puvaneswari, N; Muthukrishnan, J; Gunasekaran, P

    2006-08-01

    Toxic effluents containing azo dyes are discharged from various industries and they adversely affect water resources, soil fertility, aquatic organisms and ecosystem integrity. They pose toxicity (lethal effect, genotoxicity, mutagenicity and carcinogenicity) to aquatic organisms (fish, algae, bacteria, etc.) as well as animals. They are not readily degradable under natural conditions and are typically not removed from waste water by conventional waste water treatment systems. Benzidine based dyes have long been recognized as a human urinary bladder carcinogen and tumorigenic in a variety of laboratory animals. Several microorganisms have been found to decolourize, transform and even to completely mineralize azo dyes. A mixed culture of two Pseudomonas strains efficiently degraded mixture of 3-chlorobenzoate (3-CBA) and phenol/cresols. Azoreductases of different microorganisms are useful for the development of biodegradation systems as they catalyze reductive cleavage of azo groups (-N=N-) under mild conditions. In this review, toxic impacts of dyeing factory effluents on plants, fishes, and environment, and plausible bioremediation strategies for removal of azo dyes have been discussed.

  2. N20 and NH3 emissions from a bioreactor landfill operated under limited aerobic degradation conditions

    Institute of Scientific and Technical Information of China (English)

    Pinjing He; Na Yang; Huili Gu; Hua Zhang; Liming Shao

    2011-01-01

    The combination of leachate recirculation and aeration to landfill may be an efficient way for in-situ nitrogen removal. However,nitrogenous substances contained in the landfill layer are concomitantly transformed into N20 and NH3, leading to increased emissions into the atmosphere. In the present study, the emissions of N20 and NH3 were measured under conditions of fresh or partially stabilized refuse with or without leachate recirculation or intermittent aeration. The results showed that the largest N20 emission (12.4 mg-N/L of the column) was observed in the aerated column loaded with partially stabilized refuse and recycled with the leachate of low C/N ratio; while less than 0.33 mg-N/L of the column was produced in the other columns. N20 production was positively correlated with the prolonged aerobic time and negatively related with the C/N ratio in the recycled leachate. NH3 volatilization increased with enhanced gas flow and concentration of free ammonia in the leachate, and the highest cumulative vola tilization quantity was 1.7 mg-N/L of the column.

  3. Microbial degradation of chlorinated compounds. Application of specialized bacteria in the treatment of contaminated soil and waste water.

    NARCIS (Netherlands)

    Oldenhuis, Roelof

    1992-01-01

    The development of (aerobic) treatment technologies for polluted environments and waste streams will require an understanding of the microbial potential and the ecophysiology of the most suitable organisms. Therefore, we have studied physiological pathways and some kinetic aspects of the biotransfor

  4. Microbial community analysis in a combined anaerobic and aerobic digestion system for treatment of cellulosic ethanol production wastewater.

    Science.gov (United States)

    Shan, Lili; Yu, Yanling; Zhu, Zebing; Zhao, Wei; Wang, Haiman; Ambuchi, John J; Feng, Yujie

    2015-11-01

    This study investigated the microbial diversity established in a combined system composed of a continuous stirred tank reactor (CSTR), expanded granular sludge bed (EGSB) reactor, and sequencing batch reactor (SBR) for treatment of cellulosic ethanol production wastewater. Excellent wastewater treatment performance was obtained in the combined system, which showed a high chemical oxygen demand removal efficiency of 95.8% and completely eliminated most complex organics revealed by gas chromatography-mass spectrometry (GC-MS). Denaturing gradient gel electrophoresis (DGGE) analysis revealed differences in the microbial community structures of the three reactors. Further identification of the microbial populations suggested that the presence of Lactobacillus and Prevotella in CSTR played an active role in the production of volatile fatty acids (VFAs). The most diverse microorganisms with analogous distribution patterns of different layers were observed in the EGSB reactor, and bacteria affiliated with Firmicutes, Synergistetes, and Thermotogae were associated with production of acetate and carbon dioxide/hydrogen, while all acetoclastic methanogens identified belonged to Methanosaetaceae. Overall, microorganisms associated with the ability to degrade cellulose, hemicellulose, and other biomass-derived organic carbons were observed in the combined system. The results presented herein will facilitate the development of an improved cellulosic ethanol production wastewater treatment system.

  5. Aerobic degradation of ibuprofen in batch and continuous reactors by an indigenous bacterial community.

    Science.gov (United States)

    Fortunato, María Susana; Fuentes Abril, Nancy Piedad; Martinefski, Manuela; Trípodi, Valeria; Papalia, Mariana; Rádice, Marcela; Gutkind, Gabriel; Gallego, Alfredo; Korol, Sonia Edith

    2016-10-01

    Water from six points from the Riachuelo-Matanza basin was analyzed in order to assess ibuprofen biodegradability. In four of them biodegradation of ibuprofen was proved and degrading bacterial communities were isolated. Biodegradation in each point could not be correlated with sewage pollution. The indigenous bacterial community isolated from the point localized in the La Noria Bridge showed the highest degradative capacity and was selected to perform batch and continuous degradation assays. The partial 16S rRNA gene sequence showed that the community consisted of Comamonas aquatica and Bacillus sp. In batch assays the community was capable of degrading 100 mg L(-1) of ibuprofen in 33 h, with a specific growth rate (μ) of 0.21 h(-1). The removal of the compound, as determined by High performance liquid chromatography (HPLC), exceeded 99% of the initial concentration, with a 92.3% removal of Chemical Oxygen Demand (COD). In a down-flow fixed-bed continuous reactor, the community shows a removal efficiency of 95.9% of ibuprofen and 92.3% of COD for an average inlet concentration of 110.4 mg. The reactor was kept in operation for 70 days. The maximal removal rate for the compound was 17.4 g m(-3) d(-1). Scanning electron microscopy was employed to observe biofilm development in the reactor. The ability of the isolated indigenous community can be exploited to improve the treatment of wastewaters containing ibuprofen. PMID:26905769

  6. Strategies of aerobic microbial Fe acquisition from Fe-bearing montmorillonite clay

    Science.gov (United States)

    Kuhn, Keshia M.; DuBois, Jennifer L.; Maurice, Patricia A.

    2013-09-01

    This research investigated strategies used by the common aerobic soil bacterium Pseudomonas mendocina to acquire Fe associated with Fe(III)-bearing montmorillonite (MMT) clay. Given the known importance of Fe(III)-chelating siderophores, Fe-limited batch experiments were conducted using a wild-type (WT) strain that produces siderophores and a ΔpmhA mutant with a siderophore(-) phenotype. Growth measurements were coupled with a transcriptional biosensor assay that monitors the siderophore biosynthesis gene pmhA, measurements of cells' reducing ability, and quantification of exopolymeric substance (EPS) production. WT cells actively grow when MMT is the sole Fe source, but sorption to MMT may decrease the concentration of dissolved Fe-siderophore complex accessible to cells. Cells also obtain Fe by reducing MMT-associated Fe(III), but because P. mendocina lacks a secreted/diffusible reductant, direct physical contact is required. Dual strategies for Fe acquisition—a reducing mechanism that requires contact and that is likely facilitated by biofilm production and a siderophore related mechanism that does not require contact—provide flexibility to address the environmental Fe challenge.

  7. Microbial degradation and impact of Bracken toxin ptaquiloside on microbial communities in soil

    DEFF Research Database (Denmark)

    Engel, Pernille; Brandt, Kristian Koefoed; Rasmussen, Lars Holm;

    2007-01-01

    The carcinogenic and toxic ptaquiloside (PTA) is a major secondary metabolite in Bracken fern (Pteridium aquilinum (L.) Kuhn) and was hypothesized to influence microbial communities in soil below Bracken stands. Soil and Bracken tissue were sampled at field sites in Denmark (DK) and New Zealand (NZ...

  8. Riverine Dissolved Organic Matter Degradation Modeled Through Microbial Incubations of Vascular Plant Leachates

    Science.gov (United States)

    Harfmann, J.; Hernes, P.; Chuang, C. Y.

    2015-12-01

    Dissolved organic matter (DOM) contains as much carbon as is in the atmosphere, provides the main link between terrestrial and marine carbon reservoirs, and fuels the microbial food web. The fate and removal of DOM is a result of several complex conditions and processes, including photodegradation, sorption/desorption, dominant vascular plant sources, and microbial abundance. In order to better constrain factors affecting microbial degradation, laboratory incubations were performed using Sacramento River water for microbial inoculums and vascular plant leachates. Four vascular plant sources were chosen based on their dominance in the Sacramento River Valley: gymnosperm needles from Pinus sabiniana (foothill pine), angiosperm dicot leaves from Quercus douglassi (blue oak), angiosperm monocot mixed annual grasses, and angiosperm monocot mixed Schoenoplectus acutus (tule) and Typha spp. (cattails). Three concentrations of microbial inoculum were used for each plant material, ranging from 0.2% to 10%. Degradation was monitored as a function of time using dissolved organic carbon (DOC), UV-Vis absorbance, and fluorescent dissolved organic matter (fDOM), and was compared across vascular plant type and inoculum concentration.

  9. Microbial Degradation of Propylene Glycol - Modelling Approach of a Batch Experiment

    Science.gov (United States)

    Dathe, Annette; Fernandez, Perrine; Bakken, Lars; Bloem, Esther; French, Helen

    2016-04-01

    De-icing chemicals are applied in large amounts at airports during winter conditions to keep the runways and aircrafts ice-free. At Gardermoen airport, Norway, most of the applied chemicals can be captured, but about 10 to 20 % infiltrate into the soil along the runways and during take-off. While the commonly used propylene glycol (PG) is easily degradable by local microbial communities, its biological oxygen demand is high, anoxic zones can develop and soluble Fe+2 and Mn+2 ions eventually can reach the groundwater. The objectives of the presented study are to quantify the mechanisms, which control the order of reduction processes in an unsaturated sandy soil, and to test whether measured redox potentials can help to determine underlying biogeochemical reactions. To investigate the mechanisms of microbial degradation, the water phase of soil samples from Gardermoen Airport was replaced by deionized water with 10 mMol PG or 10 mMol glutamate and the samples were incubated at 10°C for about two weeks. The gas phase was sampled and analyzed automatically every three hours. Microbial degradation of the substrate (PG or glutamate) was modelled following a Monod kinetics using the FME (Flexible Modelling Environment) package of R (Project for Statistical Computing). The model was calibrated against measurements of O2 depletion and CO2 production. The initial concentrations of O2, CO2 and PG or glutamate are known and microbial yields and stoichiometric constants can be calculated from the measurements. Parameter values for the initial microbial population size, maximum microbial growth rate, the half saturation constant, and microbial degradation and respiration rates were fitted using the FME package. The model accounts for carbon from the substrate (PG or glutamate) incorporated into the biomass. Results are promising, but because of the large number of parameters needed to fit a Monod kinetics it is challenging to accurately model a whole redox sequence. The

  10. Microbial degradation of trichloroethylene in the rhizosphere: Potential application to biological remediation of waste sites

    International Nuclear Information System (INIS)

    The possibility that vegetation may be used to actively promote microbial restoration of chemically contaminated soils was tested by using rhizosphere and nonvegetated soils collected from a trichloroethylene (TCE)-contaminated field site. Biomass determinations, disappearance of TCE from the headspace of spiked soil slurries, and mineralization of [14C]TCE to 14CO2 all showed that microbial activity is greater in rhizosphere soils and that TCE degradation occurs faster in the rhizosphere than in the edaphosphere. Thus, vegetation may be an important variable in the biological restoration of surface and near-surface soils

  11. Microbial degradation of crude oil hydrocarbons on organoclay minerals.

    Science.gov (United States)

    Ugochukwu, Uzochukwu C; Manning, David A C; Fialips, Claire I

    2014-11-01

    The role of organoclays in hydrocarbon removal during biodegradation was investigated in aqueous clay/oil microcosm experiments with a hydrocarbon degrading microorganism community. The clays used for this study were Na-montmorillonite and saponite. These two clays were treated with didecyldimethylammonium bromide to produce organoclays which were used in this study. The study indicated that clays with high cation exchange capacity (CEC) such as Na-montmorillonite produced an organomontmorillonite that was inhibitory to biodegradation of the crude oil hydrocarbons. Extensive hydrophobic interaction between the organic phase of the organoclay and the crude oil hydrocarbons is suggested to render the hydrocarbons unavailable for biodegradation. However, untreated Na-montmorillonite was stimulatory to biodegradation of the hydrocarbons and is believed to have done so because of its high surface area for the accumulation of microbes and nutrients making it easy for the microbes to access the nutrients. This study indicates that unlike unmodified montmorillonites, organomontmorillonite may not serve any useful purpose in the bioremediation of crude oil spill sites where hydrocarbon removal by biodegradation is desired within a rapid time period. PMID:24956464

  12. Mining of hemicellulose and lignin degrading genes from differentially enriched methane producing microbial community.

    Science.gov (United States)

    Pandit, Prabhakar D; Gulhane, Madhuri K; Khardenavis, Anshuman A; Purohit, Hemant J

    2016-09-01

    Study creates a scenario for enrichment and selection of ligno-hemicellulose degrading genotypes with anaerobic bioreactor as a model using rice straw, vegetable waste and food waste as substrates. Relative discrimination analysis showed that the hydrolytic pathways and associated microbial communities for ligno-hemicellulose degradation were dominatingly colonized with rice straw as substrate. The dominating bacteria were Caldicellulosiruptor, Fervidobacterium, Cytophaga, Ruminococcus, Thermotoga associated with hemicellulose degradation and Burkholderia, Pandorea, Sphingomonas, Spirochaeta, Pseudomonas for lignocellulose hydrolysis. This was further supported by the abundance of anaerobic aromatic compound degrading genes along with genes for xylanase and xylosidase in rice straw enriched community. The metagenome analysis data was validated by evaluation of the biochemical methane potential for these substrates. Food waste being most amenable substrate yielded 1410mL of biogas/gVS added whereas, biogas yield of 1160mL/gVS and 1080mL/gVS was observed in presence of vegetable waste and rice straw respectively.

  13. Microbial degradation of Paclitaxel using Citrobacter amalonaticus Rashtia isolated from pharmaceutical wastewater: kinetic and thermodynamic study.

    Science.gov (United States)

    Zamani, Hojjatolah; Grakoee, Seyed Reza; Rakhshaee, Roohan

    2016-08-01

    Paclitaxel is a highly toxic anticancer agent which is used in a wide range against ovarian, breast, lung, and prostate cancers. Paclitaxel is manufactured recently in the north of Iran which may lead to the introduction of the drug into the environment via pharmaceutical wastewater. To our knowledge, Paclitaxel degradation is currently performed using physicochemical methods and biological degradation of Paclitaxel has not been reported. In this study, a Paclitaxel degrading bacterium was isolated from pharmaceutical wastewater for the first time. The bacterium was identified using biochemical and molecular assays and its Paclitaxel degradation potential was evaluated using High Performance Liquid Chromatography (HPLC). In addition, kinetic and thermodynamic study of Paclitaxel degradation at different experimental conditions was performed. A Citrobacter species named as C. amalonaticus Rashtia able to degrade and utilize Paclitaxel as the sole carbon source was isolated. The isolated strain tolerated high level concentration of Paclitaxel (0.4 mg/mL) in liquid culture media and was able to degrade spillage-level concentrations of the drug (0.01-0.1 mg/mL) with 87-93 % efficacy under aerobic condition. Kinetic and thermodynamic study at different pHs (4.0, 7.0 and 10.0) and temperatures (285, 295 and 310 K) revealed that Paclitaxel degradation is a non-spontaneous process and the highest rate constant was observed in the basic condition and at the highest temperature. The ΔG values at 285, 295 and 310 K were determined 103.3, 105.9 and 109.9 kJ/mol, respectively. In addition, The ΔH and activation energy (Ea) of the process were determined +28.7 kJ/mol and +30.87 kJ/mol, respectively.

  14. Degradation of corn stalk by the composite microbial system of MC1

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The composite microbial system of MC1 was used to degrade corn stalk in order to determine properties of the degraded products as well as bacterial composition of MC1. Results indicated that the pH of the fermentation broth was typical of lignocellulose degradatioin by MC1, decreasing in the early phase and increasing in later stages of the degradation. The microbial biomass peaked on the day 3 after degradation. The MC1 effeciently degraded the corn stalk by nearly 70% during which its cellulose content decreased by 71.2%, hemicellulose by 76.5% and lignin by 24.6%. The content of water-soluble carbohydrates (WSC) in the fermentation broth increased progressively during the first three days, and decreased thereafter, suggesting an accumulation of WSC in the early phase of the degradation process. Total levels of various volatile products peaked in the third day after degradation , and 7 types of volatile products were detected in the fermentation broth. These were ethanol, acetic acid, 1,2-ethanediol, propanoic acid, butanoic acid, 3-methyl-butanoic acid and glycerine. Six major compounds were quantitatively analysed and the contents of each compound were ethanol (0.584 g/L), acetic acid (0.735 g/L), 1,2-ethanediol (0.772 g/L), propanoic acid (0.026 g/L), butanoic acid (0.018 g/L) and glycerine (4.203 g/L). Characterization of bacterial cells collected from the culture solution, based on 16S rDNA PCR-DGGE analysis of DNAs, showed that the composition of bacterial community in MC1 coincided basically with observations from previous studies. This indicated that the structure of MC1 is very stable during degradation of different lignocellulose materials.

  15. Investigation of the rumen microbial community responsible for degradation of a putative toxin in Acacia angustissima

    International Nuclear Information System (INIS)

    Acacia angustissima has been proposed as a protein supplement in countries where availability of high quality fodder for grazing animals is a problem due to extreme, dry climates. While A. angustissima thrives in harsh environments and provides valuable nutrients required by ruminants, it has also been found to contain anti-nutritive factors that currently preclude its widespread application. A number of non-protein amino acids have been identified in the leaves of A. angustissima and in the past these have been linked to toxicity in ruminants. The non-protein amino acid 4-n-acetyl-2,4-diaminobutyric acid (ADAB) had been determined to be the major non-protein amino acid in the leaves of A. angustissima. Thus, in this study, the aim was to identify microorganisms from the rumen environment capable of degrading ADAB. Using an ADAB-containing plant extract, a mixed enrichment culture was obtained that exhibited substantial ADAB-degrading ability. Attempts to isolate an ADAB-degrading micro-organism were carried out, but no isolates were able to degrade ADAB in pure culture. The mixed microbial community of the ADAB-degrading enrichment culture was further examined through the use of pure-culture-independent techniques. Fluorescence in situ hybridization (FISH) was employed to investigate the diversity within this sample. In addition two bacterial 16S rDNA clone libraries were constructed in an attempt to further elucidate the members of the microbial population. The clone libraries were constructed from serial dilutions of the enrichment culture, a 10-5 dilution where complete degradation of ADAB occurred, and a 10-7 dilution where ADAB degradation did not occur. Through the comparison of these two libraries it was hypothesized that clones belonging to the Firmicutes phylum were involved in ADAB degradation. A FISH probe, ADAB1268, was then designed to target these clones and was applied to the enrichment cultures to investigate their relative abundance within the

  16. Anoxic carbon degradation in Arctic sediments: Microbial transformations of complex substrates

    DEFF Research Database (Denmark)

    Arnosti, Carol; Finke, Niko; Larsen, Ole;

    2005-01-01

    Complex substrates are degraded in anoxic sediments by the concerted activities of diverse microbial communities. To explore the effects of substrate complexity on carbon transformations in permanently cold anoxic sediments, four substrates—Spirulina cells, Isochrysis cells, and soluble high...... of carbon degradation diverged, with an additional 43%, 32%, 33%, and 8% of Isochrysis, Iso-Ex, Spirulina, and Spir-Ex carbon respired to CO2 over the next 750 h of incubation. Somewhat surprisingly, the soluble, carbohydrate-rich extracts did not prove to be more labile substrates than the whole cells from...

  17. Effects of soil organic matter on the development of the microbial polycyclic aromatic hydrocarbons (PAHs) degradation potentials

    International Nuclear Information System (INIS)

    The microbial activity in soils was a critical factor governing the degradation of organic micro-pollutants. The present study was conducted to analyze the effects of soil organic matter on the development of degradation potentials for polycyclic aromatic hydrocarbons (PAHs). Most of the degradation kinetics for PAHs by the indigenous microorganisms developed in soils can be fitted with the Logistic growth models. The microbial activities were relatively lower in the soils with the lowest and highest organic matter content, which were likely due to the nutrition limit and PAH sequestration. The microbial activities developed in humic acid (HA) were much higher than those developed in humin, which was demonstrated to be able to sequester organic pollutants stronger. The results suggested that the nutrition support and sequestration were the two major mechanisms, that soil organic matter influenced the development of microbial PAHs degradation potentials. - Research highlights: → PAH degradation kinetics obey Logistic model. → Degradation potentials depend on soil organic carbon content. → Humin inhibits the development of PAH degradation activity. → Nutrition support and sequestration regulate microbial degradation capacity. - Soil organic matter regulated PAH degradation potentials through nutrition support and sequestration.

  18. Cascade degradation of organic matters in brewery wastewater using a continuous stirred microbial electrochemical reactor and analysis of microbial communities

    Science.gov (United States)

    Wang, Haiman; Qu, Youpeng; Li, Da; Ambuchi, John J.; He, Weihua; Zhou, Xiangtong; Liu, Jia; Feng, Yujie

    2016-01-01

    A continuous stirred microbial electrochemical reactor (CSMER), comprising of a complete mixing zone (CMZ) and microbial electrochemical zone (MEZ), was used for brewery wastewater treatment. The system realized 75.4 ± 5.7% of TCOD and 64.9 ± 4.9% of TSS when fed with brewery wastewater concomitantly achieving an average maximum power density of 304 ± 31 m W m−2. Cascade utilization of organic matters made the CSMER remove a wider range of substrates compared with a continuous stirred tank reactor (CSTR), in which process 79.1 ± 5.6% of soluble protein and 86.6 ± 2.2% of soluble carbohydrates were degraded by anaerobic digestion in the CMZ and short-chain volatile fatty acids were further decomposed and generated current in the MEZ. Co-existence of fermentative bacteria (Clostridium and Bacteroides, 19.7% and 5.0%), acetogenic bacteria (Syntrophobacter, 20.8%), methanogenic archaea (Methanosaeta and Methanobacterium, 40.3% and 38.4%) and exoelectrogens (Geobacter, 12.4%) as well as a clear spatial distribution and syntrophic interaction among them contributed to the cascade degradation process in CSMER. The CSMER shows great promise for practical wastewater treatment application due to high pre-hydrolysis and acidification rate, high energy recovery and low capital cost. PMID:27270788

  19. Cascade degradation of organic matters in brewery wastewater using a continuous stirred microbial electrochemical reactor and analysis of microbial communities.

    Science.gov (United States)

    Wang, Haiman; Qu, Youpeng; Li, Da; Ambuchi, John J; He, Weihua; Zhou, Xiangtong; Liu, Jia; Feng, Yujie

    2016-06-07

    A continuous stirred microbial electrochemical reactor (CSMER), comprising of a complete mixing zone (CMZ) and microbial electrochemical zone (MEZ), was used for brewery wastewater treatment. The system realized 75.4 ± 5.7% of TCOD and 64.9 ± 4.9% of TSS when fed with brewery wastewater concomitantly achieving an average maximum power density of 304 ± 31 m W m(-2). Cascade utilization of organic matters made the CSMER remove a wider range of substrates compared with a continuous stirred tank reactor (CSTR), in which process 79.1 ± 5.6% of soluble protein and 86.6 ± 2.2% of soluble carbohydrates were degraded by anaerobic digestion in the CMZ and short-chain volatile fatty acids were further decomposed and generated current in the MEZ. Co-existence of fermentative bacteria (Clostridium and Bacteroides, 19.7% and 5.0%), acetogenic bacteria (Syntrophobacter, 20.8%), methanogenic archaea (Methanosaeta and Methanobacterium, 40.3% and 38.4%) and exoelectrogens (Geobacter, 12.4%) as well as a clear spatial distribution and syntrophic interaction among them contributed to the cascade degradation process in CSMER. The CSMER shows great promise for practical wastewater treatment application due to high pre-hydrolysis and acidification rate, high energy recovery and low capital cost.

  20. Cascade degradation of organic matters in brewery wastewater using a continuous stirred microbial electrochemical reactor and analysis of microbial communities.

    Science.gov (United States)

    Wang, Haiman; Qu, Youpeng; Li, Da; Ambuchi, John J; He, Weihua; Zhou, Xiangtong; Liu, Jia; Feng, Yujie

    2016-01-01

    A continuous stirred microbial electrochemical reactor (CSMER), comprising of a complete mixing zone (CMZ) and microbial electrochemical zone (MEZ), was used for brewery wastewater treatment. The system realized 75.4 ± 5.7% of TCOD and 64.9 ± 4.9% of TSS when fed with brewery wastewater concomitantly achieving an average maximum power density of 304 ± 31 m W m(-2). Cascade utilization of organic matters made the CSMER remove a wider range of substrates compared with a continuous stirred tank reactor (CSTR), in which process 79.1 ± 5.6% of soluble protein and 86.6 ± 2.2% of soluble carbohydrates were degraded by anaerobic digestion in the CMZ and short-chain volatile fatty acids were further decomposed and generated current in the MEZ. Co-existence of fermentative bacteria (Clostridium and Bacteroides, 19.7% and 5.0%), acetogenic bacteria (Syntrophobacter, 20.8%), methanogenic archaea (Methanosaeta and Methanobacterium, 40.3% and 38.4%) and exoelectrogens (Geobacter, 12.4%) as well as a clear spatial distribution and syntrophic interaction among them contributed to the cascade degradation process in CSMER. The CSMER shows great promise for practical wastewater treatment application due to high pre-hydrolysis and acidification rate, high energy recovery and low capital cost. PMID:27270788

  1. Biodegradation of malachite green by Pseudomonas sp. strain DY1 under aerobic condition: characteristics, degradation products, enzyme analysis and phytotoxicity.

    Science.gov (United States)

    Du, Lin-Na; Wang, Sheng; Li, Gang; Wang, Bing; Jia, Xiao-Ming; Zhao, Yu-Hua; Chen, Yun-Long

    2011-03-01

    Malachite green (MG), a widely-used and recalcitrant dye, has been confirmed to be carcinogenic and mutagenic against many organisms. The main objective of this study is to investigate the capability of Pseudomonas sp. strain DY1 to decolorize MG, and to explore the possible mechanism. The results showed that this strain demonstrated high decolorizing capability (90.3-97.2%) at high concentrations of MG (100-1,000 mg/l) under shaking condition within 24 h. In static conditions, lower but still effective decolorization (78.9-84.3%) was achieved. The optimal pH and temperature for the decolorization was pH 6.6 and 28-30°C, respectively. Mg(2+) and Mn(2+) (1 mM) were observed to significantly enhance the decolorization. The intermediates of the MG degradation under aerobic condition identified by UV-visible, GC-MS and LC-MS analysis included malachite green carbinol, (dimethyl amino-phenyl)-phenyl-methanone, N,N-dimethylaniline, (methyl amino-phenyl)-phenyl-methanone, (amino phenyl)-phenyl methanone and di-benzyl methane. The enzyme analysis indicated that Mn-peroxidase, NADH-DCIP and MG reductase were involved in the biodegradation of MG. Moreover, phytotoxicity of MG and detoxification for MG by the strain were observed. Therefore, this strain could be potentially used for bioremediation of MG.

  2. Marine coastal sediments microbial hydrocarbon degradation processes: contribution of experimental ecology in the omics’era

    Directory of Open Access Journals (Sweden)

    Cristiana eCravo-Laureau

    2014-02-01

    Full Text Available Coastal marine sediments, where important biological processes take place, supply essential ecosystem services. By their location, such ecosystems are particularly exposed to human activities as evidenced by the recent Deepwater Horizon disaster. This catastrophe revealed the importance to better understand the microbial processes involved on hydrocarbon degradation in marine sediments raising strong interests of the scientific community. During the last decade, several studies have shown the key role played by microorganisms in determining the fate of hydrocarbons in oil-polluted sediments but only few have taken into consideration the whole sediment’s complexity. Marine coastal sediment ecosystems are characterized by remarkable heterogeneity, owning high biodiversity and are subjected to fluctuations in environmental conditions, especially to important oxygen oscillations due to tides. Thus, for understanding the fate of hydrocarbons in such environments, it is crucial to study microbial activities, taking into account sediment characteristics, physical-chemical factors (electron acceptors, temperature, nutrients, co-metabolites availability as well as sediment’s reworking due to bioturbation activities. Key information could be collected from in situ studies, which provide an overview of microbial processes, but it is difficult to integrate all parameters involved. Microcosm experiments allow to dissect in-depth some mechanisms involved in hydrocarbon degradation but exclude environmental complexity. To overcome these lacks, strategies have been developed, by creating experiments as close as possible to environmental conditions, for studying natural microbial communities subjected to oil pollution. We present here a review of these approaches, their results and limitation, as well as the promising future of applying ‘omics’ approaches to characterize in-depth microbial communities and metabolic networks involved in hydrocarbon

  3. Microbial litter degradation across a land-use gradient of Danish streams

    DEFF Research Database (Denmark)

    Rasmussen, Jes; Baattrup-Pedersen, Annette; Wiberg-Larsen, Peter;

    functions. In consequence, it is highly important to address and characterise relations between stream functions and anthropogenic stress. In streams, fungi and bacteria are key organism groups in the decomposition and conversion of riparian plant litter into more palatable food resources.......05) for leaf packs that were positioned at sites with low flow compared to sites with turbulent flow. Moreover, we calculated summed Toxic Units (TU) for all pesticides in each sample by weighing the toxic contribution of each compound against its toxicity for Selenastrum capricornotum (a microbial standard...... on microbial litter degradation in the field. The results clearly emphasise the importance of considering microbial litter breakdown as endpoint when evaluating the effects of anthropogenic stressors in streams. Agricultural pesticides could have the potential to alter the entire flux of energy through...

  4. Microbial phytase and liquid feeding increase phytate degradation in the gastrointestinal tract of growing pigs

    DEFF Research Database (Denmark)

    Blaabjerg, Karoline; Poulsen, Hanne Damgaard

    2010-01-01

    with microbial phytase (750 FTU/kg) fed dry; diet 3, diet 2 fed in liquid form (fermented 17.5 h, 20 °C, 50% residual in the tank). InsP6-P was not present in gastric or ileal digesta in pigs fed diet 3 due to complete InsP6 degradation before feeding. In pigs fed diet 2 the amount of gastric InsP6-P...

  5. Molecular assessment of complex microbial communities degrading long chain fatty acids in methanogenic bioreactors

    OpenAIRE

    Sousa, D.Z.; Pereira, M.A.; Smidt, Hauke; Stams, A.J.M.; Alves, M. M.

    2007-01-01

    Microbial diversity of anaerobic sludge after extended contact with long chain fatty acids (LCFA) was studied using molecular approaches. Samples containing high amounts of accumulated LCFA were obtained after continuous loading of two bioreactors with oleate or with palmitate. These sludge samples were then incubated in batch assays to allow degradation of the biomass-associated LCFA. In addition, sludge used as inoculum for the reactors was also characterized. Predominant ...

  6. Microbial communities involved in anaerobic degradation of unsaturated or saturated long chain fatty acids

    OpenAIRE

    Sousa, D.Z.; Pereira, M.A.; Stams, A.J.M.; Alves, M. M.; Smidt, H.

    2007-01-01

    Anaerobic long-chain fatty acid (LCFA)-degrading bacteria were identified by combining selective enrichment studies with molecular approaches. Two distinct enrichment cultures growing on unsaturated and saturated LCFAs were obtained by successive transfers in medium containing oleate and palmitate, respectively, as the sole carbon and energy sources. Changes in the microbial composition during enrichment were analyzed by denaturing gradient gel electrophoresis (DGGE) profiling of PCR...

  7. Effect of particle size and microbial phytase on phytate degradation in incubated maize and soybean meal

    DEFF Research Database (Denmark)

    Ton Nu, Mai Anh; Blaabjerg, Karoline; Poulsen, Hanne Damgaard

    2014-01-01

    The objective of the study was to evaluate the effect of screen size (1, 2 and 3 mm) and microbial phytase (0 and 1000 FTU/kg as-fed) on phytate degradation in maize (100% maize), soybean meal (100% SBM) and maize–SBM (75% maize and 25% SBM) incubated in water for 0, 2, 4, 8 and 24 h at 38°C...

  8. Characterization of two diesel fuel degrading microbial consortia enriched from a non acclimated, complex source of microorganisms

    Directory of Open Access Journals (Sweden)

    Varese Giovanna C

    2010-02-01

    Full Text Available Abstract Background The bioremediation of soils impacted by diesel fuels is very often limited by the lack of indigenous microflora with the required broad substrate specificity. In such cases, the soil inoculation with cultures with the desired catabolic capabilities (bioaugmentation is an essential option. The use of consortia of microorganisms obtained from rich sources of microbes (e.g., sludges, composts, manure via enrichment (i.e., serial growth transfers on the polluting hydrocarbons would provide bioremediation enhancements more robust and reproducible than those achieved with specialized pure cultures or tailored combinations (co-cultures of them, together with none or minor risks of soil loading with unrelated or pathogenic allocthonous microorganisms. Results In this work, two microbial consortia, i.e., ENZ-G1 and ENZ-G2, were enriched from ENZYVEBA (a complex commercial source of microorganisms on Diesel (G1 and HiQ Diesel (G2, respectively, and characterized in terms of microbial composition and hydrocarbon biodegradation capability and specificity. ENZ-G1 and ENZ-G2 exhibited a comparable and remarkable biodegradation capability and specificity towards n-C10 to n-C24 linear paraffins by removing about 90% of 1 g l-1 of diesel fuel applied after 10 days of aerobic shaken flask batch culture incubation at 30°C. Cultivation dependent and independent approaches evidenced that both consortia consist of bacteria belonging to the genera Chryseobacterium, Acinetobacter, Psudomonas, Stenotrophomonas, Alcaligenes and Gordonia along with the fungus Trametes gibbosa. However, only the fungus was found to grow and remarkably biodegrade G1 and G2 hydrocarbons under the same conditions. The biodegradation activity and specificity and the microbial composition of ENZ-G1 and ENZ-G2 did not significantly change after cryopreservation and storage at -20°C for several months. Conclusions ENZ-G1 and ENZ-G2 are very similar highly enriched consortia

  9. Microbial Degradation and Carbon Biosequestration Potential of Biochar in Contrasting Soils

    Science.gov (United States)

    Tas, N.; Castanha, C.; Reichl, K.; Fischer, M. L.; Brodie, E. L.; Torn, M. S.; Jansson, J. K.

    2012-12-01

    Biochar is a carbon-rich product that is produced by high-temperature and low-oxygen pyrolysis of biomass, whose addition to soil has been proposed as a promising method for carbon sequestration. Biochar carbon has been assumed to be stable in soil, but recent research shows that it is at least partly degradable by soil microbes. However, the influence of environmental conditions on microbial transformation of biochar is poorly understood. Our overall goal is to determine the factors that regulate microbial decomposition of biochar in soils. We performed laboratory incubation experiments to compare the potential for biochar decomposition in soils from contrasting ecosystems (tropical forest from Puerto Rico and Mediterranean grassland from California), varied temperatures (ambient and +6°C) and depths (A and B horizons). Soil incubations with pyrolyzed 13C-enriched wood were continuously monitored for heterotrophic respiration using an online Cavity Ringdown Spectrometer. Samples collected after 10 and 150 days of incubation were analyzed for the activity of extracellular enzymes while changes in microbial community composition were assessed via pyrotag sequencing of both 16S rRNA and 16S rRNA genes. 13C-CO2 measurements confirmed that a fraction of added biochar was degraded in both soils during the one-year incubation period. Biochar addition was associated with a decline in cellulose and hemicellulose degrading enzyme activity in grassland soils, although not in tropical soils. In both soils, native soil organic carbon decomposition was not significantly impacted by biochar addition. Principle coordinates analysis of microbial composition showed that both soils harbored different microbial communities and those communities at different depths were distinct. The main bacterial groups enriched by biochar addition were Actinobacteria in the grassland soil, and α-Proteobacteria, Actinobacteria and Acidobacteria in the tropical soil. Analysis of 16S r

  10. Integrative computational approach for genome-based study of microbial lipid-degrading enzymes.

    Science.gov (United States)

    Vorapreeda, Tayvich; Thammarongtham, Chinae; Laoteng, Kobkul

    2016-07-01

    Lipid-degrading or lipolytic enzymes have gained enormous attention in academic and industrial sectors. Several efforts are underway to discover new lipase enzymes from a variety of microorganisms with particular catalytic properties to be used for extensive applications. In addition, various tools and strategies have been implemented to unravel the functional relevance of the versatile lipid-degrading enzymes for special purposes. This review highlights the study of microbial lipid-degrading enzymes through an integrative computational approach. The identification of putative lipase genes from microbial genomes and metagenomic libraries using homology-based mining is discussed, with an emphasis on sequence analysis of conserved motifs and enzyme topology. Molecular modelling of three-dimensional structure on the basis of sequence similarity is shown to be a potential approach for exploring the structural and functional relationships of candidate lipase enzymes. The perspectives on a discriminative framework of cutting-edge tools and technologies, including bioinformatics, computational biology, functional genomics and functional proteomics, intended to facilitate rapid progress in understanding lipolysis mechanism and to discover novel lipid-degrading enzymes of microorganisms are discussed. PMID:27263017

  11. Mass dependent stable isotope fractionation of mercury during mer mediated microbial degradation of monomethylmercury

    Science.gov (United States)

    Kritee, K.; Barkay, Tamar; Blum, Joel D.

    2009-03-01

    Controlling bioaccumulation of toxic monomethylmercury (MMHg) in aquatic food chains requires differentiation between biotic and abiotic pathways that lead to its production and degradation. Recent mercury (Hg) stable isotope measurements of natural samples suggest that Hg isotope ratios can be a powerful proxy for tracing dominant Hg transforming pathways in aquatic ecosystems. Specifically, it has been shown that photo-degradation of MMHg causes both mass dependent (MDF) and mass independent fractionation (MIF) of Hg isotopes. Because the extent of MDF and MIF observed in natural samples (e.g., fish, soil and sediments) can potentially be used to determine the relative importance of pathways leading to MMHg accumulation, it is important to determine the potential role of microbial pathways in contributing to the fractionation, especially MIF, observed in these samples. This study reports the extent of fractionation of Hg stable isotopes during degradation of MMHg to volatile elemental Hg and methane via the microbial Hg resistance ( mer) pathway in Escherichia coli carrying a mercury resistance ( mer) genetic system on a multi-copy plasmid. During experimental microbial degradation of MMHg, MMHg remaining in reactors became progressively heavier (increasing δ202Hg) with time and underwent mass dependent Rayleigh fractionation with a fractionation factor α202/198 = 1.0004 ± 0.0002 (2SD). However, MIF was not observed in any of the microbial MMHg degradation experiments indicating that the isotopic signature left by mer mediated MMHg degradation is significantly different from fractionation observed during DOC mediated photo-degradation of MMHg. Additionally, a clear suppression of Hg isotope fractionation, both during reduction of Hg(II) and degradation of MMHg, was observed when the cell densities increased, possibly due to a reduction in substrate bioavailability. We propose a multi-step framework for understanding the extent of fractionation seen in our MMHg

  12. Modeling microbial degradation of propylene glycol: electron acceptors and their related redox conditions

    Science.gov (United States)

    Dathe, Annette; Fernandez, Perrine M.; Bloem, Esther; Meeussen, Johannes C. L.; French, Helen K.

    2014-05-01

    De-icing chemicals are applied in large amounts at airports during winter conditions to keep the runways and aircrafts ice-free. The commonly used propylene glycol (PG) is easily degradable by local microbial communities, but anoxic zones develop and soluble Fe+2 and Mn+2 ions can reach the groundwater. To enhance microbial induced remediation and reduce the release of iron and manganese, it was proposed to add NO3- together with PG. However, experiments conducted in the unsaturated zone at Gardermoen airport, Norway, revealed that manganese and iron were preferred over NO3- as electron acceptor [1]. The objectives of this study are to quantify mechanisms which control the order of reduction processes in an unsaturated sandy soil, and to test whether measured redox potentials can help to determine underlying biogeochemical reactions. We are modelling the microbial degradation of PG using Monod kinetics described for the chemical equilibrium tool ORCHESTRA [2], following an approach of [1]. The model is calibrated against gas measurements of CO2, NO2 and N2 released from batch experiments performed under controlled conditions. Fe+2 and Mn+2 were measured for the start and end of the experiment, as well as bulk resistivity, pH and electrical conductivity. With the calibrated model we are working towards a tool to quantify microbial induced redox reactions under different soil water saturations to account for seasonal water fluxes especially during snowmelt. [1] Schotanus, D., Meeussen, J.C.L., Lissner, H., van der Ploeg, M.J., Wehrer, M., Totsche, K.U., van der Zee, S.E.A.T.M., 2013. Transport and degradation of propylene glycol in the vadose zone: model development and sensitivity analysis. Environ Sci Pollut Res Int. [2] Meeussen, J.C.L., 2003. ORCHESTRA: An Object-Oriented Framework for Implementing Chemical Equilibrium Models. Environ. Sci. Technol. 37, 1175-1182.

  13. Current State of Knowledge in Microbial Degradation of Polycyclic Aromatic Hydrocarbons (PAHs): A Review

    Science.gov (United States)

    Ghosal, Debajyoti; Ghosh, Shreya; Dutta, Tapan K.; Ahn, Youngho

    2016-01-01

    Polycyclic aromatic hydrocarbons (PAHs) include a group of organic priority pollutants of critical environmental and public health concern due to their toxic, genotoxic, mutagenic and/or carcinogenic properties and their ubiquitous occurrence as well as recalcitrance. The increased awareness of their various adverse effects on ecosystem and human health has led to a dramatic increase in research aimed toward removing PAHs from the environment. PAHs may undergo adsorption, volatilization, photolysis, and chemical oxidation, although transformation by microorganisms is the major neutralization process of PAH-contaminated sites in an ecologically accepted manner. Microbial degradation of PAHs depends on various environmental conditions, such as nutrients, number and kind of the microorganisms, nature as well as chemical property of the PAH being degraded. A wide variety of bacterial, fungal and algal species have the potential to degrade/transform PAHs, among which bacteria and fungi mediated degradation has been studied most extensively. In last few decades microbial community analysis, biochemical pathway for PAHs degradation, gene organization, enzyme system, genetic regulation for PAH degradation have been explored in great detail. Although, xenobiotic-degrading microorganisms have incredible potential to restore contaminated environments inexpensively yet effectively, but new advancements are required to make such microbes effective and more powerful in removing those compounds, which were once thought to be recalcitrant. Recent analytical chemistry and genetic engineering tools might help to improve the efficiency of degradation of PAHs by microorganisms, and minimize uncertainties of successful bioremediation. However, appropriate implementation of the potential of naturally occurring microorganisms for field bioremediation could be considerably enhanced by optimizing certain factors such as bioavailability, adsorption and mass transfer of PAHs. The main

  14. Current State of Knowledge in Microbial Degradation of Polycyclic Aromatic Hydrocarbons (PAHs): A Review.

    Science.gov (United States)

    Ghosal, Debajyoti; Ghosh, Shreya; Dutta, Tapan K; Ahn, Youngho

    2016-01-01

    Polycyclic aromatic hydrocarbons (PAHs) include a group of organic priority pollutants of critical environmental and public health concern due to their toxic, genotoxic, mutagenic and/or carcinogenic properties and their ubiquitous occurrence as well as recalcitrance. The increased awareness of their various adverse effects on ecosystem and human health has led to a dramatic increase in research aimed toward removing PAHs from the environment. PAHs may undergo adsorption, volatilization, photolysis, and chemical oxidation, although transformation by microorganisms is the major neutralization process of PAH-contaminated sites in an ecologically accepted manner. Microbial degradation of PAHs depends on various environmental conditions, such as nutrients, number and kind of the microorganisms, nature as well as chemical property of the PAH being degraded. A wide variety of bacterial, fungal and algal species have the potential to degrade/transform PAHs, among which bacteria and fungi mediated degradation has been studied most extensively. In last few decades microbial community analysis, biochemical pathway for PAHs degradation, gene organization, enzyme system, genetic regulation for PAH degradation have been explored in great detail. Although, xenobiotic-degrading microorganisms have incredible potential to restore contaminated environments inexpensively yet effectively, but new advancements are required to make such microbes effective and more powerful in removing those compounds, which were once thought to be recalcitrant. Recent analytical chemistry and genetic engineering tools might help to improve the efficiency of degradation of PAHs by microorganisms, and minimize uncertainties of successful bioremediation. However, appropriate implementation of the potential of naturally occurring microorganisms for field bioremediation could be considerably enhanced by optimizing certain factors such as bioavailability, adsorption and mass transfer of PAHs. The main

  15. Current State of Knowledge in Microbial Degradation of Polycyclic Aromatic Hydrocarbons (PAHs): A Review

    Science.gov (United States)

    Ghosal, Debajyoti; Ghosh, Shreya; Dutta, Tapan K.; Ahn, Youngho

    2016-01-01

    Polycyclic aromatic hydrocarbons (PAHs) include a group of organic priority pollutants of critical environmental and public health concern due to their toxic, genotoxic, mutagenic and/or carcinogenic properties and their ubiquitous occurrence as well as recalcitrance. The increased awareness of their various adverse effects on ecosystem and human health has led to a dramatic increase in research aimed toward removing PAHs from the environment. PAHs may undergo adsorption, volatilization, photolysis, and chemical oxidation, although transformation by microorganisms is the major neutralization process of PAH-contaminated sites in an ecologically accepted manner. Microbial degradation of PAHs depends on various environmental conditions, such as nutrients, number and kind of the microorganisms, nature as well as chemical property of the PAH being degraded. A wide variety of bacterial, fungal and algal species have the potential to degrade/transform PAHs, among which bacteria and fungi mediated degradation has been studied most extensively. In last few decades microbial community analysis, biochemical pathway for PAHs degradation, gene organization, enzyme system, genetic regulation for PAH degradation have been explored in great detail. Although, xenobiotic-degrading microorganisms have incredible potential to restore contaminated environments inexpensively yet effectively, but new advancements are required to make such microbes effective and more powerful in removing those compounds, which were once thought to be recalcitrant. Recent analytical chemistry and genetic engineering tools might help to improve the efficiency of degradation of PAHs by microorganisms, and minimize uncertainties of successful bioremediation. However, appropriate implementation of the potential of naturally occurring microorganisms for field bioremediation could be considerably enhanced by optimizing certain factors such as bioavailability, adsorption and mass transfer of PAHs. The main

  16. Current state of knowledge in microbial degradation of polycyclic aromatic hydrocarbons (PAHs: a review

    Directory of Open Access Journals (Sweden)

    Debajyoti Ghosal

    2016-08-01

    Full Text Available Polycyclic aromatic hydrocarbons (PAHs include a group of organic priority pollutants of critical environmental and public health concern due to their toxic, genotoxic, mutagenic and/or carcinogenic properties and their ubiquitous occurrence as well as recalcitrance. The increased awareness of their various adverse effects on ecosystem and human health has led to a dramatic increase in research aimed towards removing PAHs from the environment. PAHs may undergo adsorption, volatilization, photolysis, and chemical oxidation, although transformation by microorganisms is the major neutralization process of PAH-contaminated sites in an ecologically accepted manner. Microbial degradation of PAHs depends on various environmental conditions, such as nutrients, number and kind of the microorganisms, nature as well as chemical property of the PAH being degraded. A wide variety of bacterial, fungal and algal species have the potential to degrade/transform PAHs, among which bacteria and fungi mediated degradation has been studied most extensively. In last few decades microbial community analysis, biochemical pathway for PAHs degradation, gene organization, enzyme system, genetic regulation for PAH degradation have been explored in great detail. Although, xenobiotic-degrading microorganisms have incredible potential to restore contaminated environments inexpensively yet effectively, but new advancements are required to make such microbes effective and more powerful in removing those compounds, which were once thought to be recalcitrant. Recent analytical chemistry and genetic engineering tools might help to improve the efficiency of degradation of PAHs by microorganisms, and minimize uncertainties of successful bioremediation. However, appropriate implementation of the potential of naturally occurring microorganisms for field bioremediation could be considerably enhanced by optimizing certain factors such as bioavailability, adsorption and mass transfer of

  17. Current State of Knowledge in Microbial Degradation of Polycyclic Aromatic Hydrocarbons (PAHs): A Review.

    Science.gov (United States)

    Ghosal, Debajyoti; Ghosh, Shreya; Dutta, Tapan K; Ahn, Youngho

    2016-01-01

    Polycyclic aromatic hydrocarbons (PAHs) include a group of organic priority pollutants of critical environmental and public health concern due to their toxic, genotoxic, mutagenic and/or carcinogenic properties and their ubiquitous occurrence as well as recalcitrance. The increased awareness of their various adverse effects on ecosystem and human health has led to a dramatic increase in research aimed toward removing PAHs from the environment. PAHs may undergo adsorption, volatilization, photolysis, and chemical oxidation, although transformation by microorganisms is the major neutralization process of PAH-contaminated sites in an ecologically accepted manner. Microbial degradation of PAHs depends on various environmental conditions, such as nutrients, number and kind of the microorganisms, nature as well as chemical property of the PAH being degraded. A wide variety of bacterial, fungal and algal species have the potential to degrade/transform PAHs, among which bacteria and fungi mediated degradation has been studied most extensively. In last few decades microbial community analysis, biochemical pathway for PAHs degradation, gene organization, enzyme system, genetic regulation for PAH degradation have been explored in great detail. Although, xenobiotic-degrading microorganisms have incredible potential to restore contaminated environments inexpensively yet effectively, but new advancements are required to make such microbes effective and more powerful in removing those compounds, which were once thought to be recalcitrant. Recent analytical chemistry and genetic engineering tools might help to improve the efficiency of degradation of PAHs by microorganisms, and minimize uncertainties of successful bioremediation. However, appropriate implementation of the potential of naturally occurring microorganisms for field bioremediation could be considerably enhanced by optimizing certain factors such as bioavailability, adsorption and mass transfer of PAHs. The main

  18. Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil.

    Science.gov (United States)

    Johnsen, Anders R; de Lipthay, Julia R; Sørensen, Søren J; Ekelund, Flemming; Christensen, Peter; Andersen, Ole; Karlson, Ulrich; Jacobsen, Carsten S

    2006-03-01

    Diffuse pollution with polycyclic aromatic hydrocarbons (PAHs) of topsoil in urban regions has caused increasing concerns in recent years. We simulated diffuse pollution of soil in microcosms by spiking sandy topsoil (A-horizon) and coarse, mineral subsoil (C-horizon) with street dust (PM63) isolated from municipal street sweepings from central Copenhagen. The microbial communities adapted to PAH degradation in microcosms spiked with street dust in both A-horizon and C-horizon soils, in spite of low PAH-concentrations. The increased potential for PAH degradation was demonstrated on several levels: by slowly diminishing PAH-concentrations, increased mineralization of 14C-PAHs, increasing numbers of PAH degraders and increased prevalence of nah and pdo1 PAH degradation genes, i.e. the microbial communities quickly adapted to PAH degradation. Three- and 4-ring PAHs from the street dust were biodegraded to some extent (10-20%), but 5- and 6-ring PAHs were not biodegraded in spite of frequent soil mixing and high PAH degradation potentials. In addition to biodegradation, leaching of 2-, 3- and 4-ring PAHs from the A-horizon to the C-horizon seems to reduce PAH-levels in surface soil. Over time, levels of 2-, 3- and 4-ring PAHs in surface soil may reach equilibrium between input and the combination of biodegradation and leaching. However, levels of the environmentally critical 5- and 6-ring PAHs will probably continue to rise. We presume that sorption to black carbon particles is responsible for the persistence and low bioaccessibility of 5- and 6-ring PAHs in diffusely polluted soil.

  19. Microbial degradation and impact of Bracken toxin ptaquiloside on microbial communities in soil

    DEFF Research Database (Denmark)

    Engel, Pernille; Brandt, Kristian Koefoed; Rasmussen, Lars Holm;

    2007-01-01

    The carcinogenic and toxic ptaquiloside (PTA) is a major secondary metabolite in Bracken fern (Pteridium aquilinum (L.) Kuhn) and was hypothesized to influence microbial communities in soil below Bracken stands. Soil and Bracken tissue were sampled at field sites in Denmark (DK) and New Zealand (NZ......). PTA contents of 2.1 ± 0.5 mg g1 and 37.0 ± 8.7 mg g1 tissue were measured in Bracken fronds from DK and NZ, respectively. In the two soils the PTA levels were similar (0–5 lg g1 soil); a decrease with depth could be discerned in the deeper B and C horizons of the DK soil (weak acid sandy Spodosol......]leucine incorporation assay) increased after PTA exposure, indicating that the Bracken toxin served as a C substrate for the organotrophic microorganisms. On the other hand, there was no apparent impact of PTA on community size as measured by substrate-induced respiration or composition as indicated by community...

  20. Microbial degradation of low-level radioactive waste. Volume 1, Annual report for FY 1993

    Energy Technology Data Exchange (ETDEWEB)

    Rogers, R.D.; Hamilton, M.A.; Veeh, R.H.; McConnell, J.W. Jr.

    1994-04-01

    The Nuclear Regulatory Commission stipulates that disposed low-level radioactive waste (LLW) be stabilized. Because of apparent ease of use and normal structural integrity, cement has been widely used as a binder to solidify LLW. However, the resulting waste forms are sometimes susceptible to failure due to the actions of waste constituents, stress, and environment. This report reviews laboratory efforts that are being developed to address the effects of microbiologically influenced chemical attack on cement-solidified LLW. Groups of microorganisms are being employed that are capable of metabolically converting organic and inorganic substrates into organic and mineral acids. Such acids aggressively react with cement and can ultimately lead to structural failure. Results on the application of mechanisms inherent in microbially influenced degradation of cement-based material are the focus of this report. Sufficient data-validated evidence of the potential for microbially influenced deterioration of cement-solidified LLW has been developed during the course of this study. These data support the continued development of appropriate tests necessary to determine the resistance of cement-solidified LLW to microbially induced degradation that could impact the stability of the waste form. They also justify the continued effort of enumeration of the conditions necessary to support the microbiological growth and population expansion.

  1. Microbial dynamics during azo dye degradation in a UASB reactor supplied with yeast extract

    Directory of Open Access Journals (Sweden)

    S.Q. Silva

    2014-12-01

    Full Text Available The present work aimed to investigate the microbial dynamics during the anaerobic treatment of the azo dye blue HRFL in bench scale upflow anaerobic sludge bed (UASB reactor operated at ambient temperature. Sludge samples were collected under distinct operational phases, when the reactor were stable (low variation of color removal, to assess the effect of glucose and yeast extract as source of carbon and redox mediators, respectively. Reactors performance was evaluated based on COD (chemical oxygen demand and color removal. The microbial dynamics were investigated by PCR-DGGE (Polimerase Chain Reaction - Denaturing Gradient of Gel Electrophoresis technique by comparing the 16S rDNA profiles among samples. The results suggest that the composition of microorganisms changed from the beginning to the end of the reactor operation, probably in response to the presence of azo dye and/or its degradation byproducts. Despite the highest efficiency of color removal was observed in the presence of 500 mg/L of yeast extract (up to 93%, there were no differences regarding the microbial profiles that could indicate a microbial selection by the yeast extract addition. On the other hand Methosarcina barkeri was detected only in the end of operation when the best efficiencies on color removal occurred. Nevertheless the biomass selection observed in the last stages of UASB operation is probably a result of the washout of the sludge in response of accumulation of aromatic amines which led to tolerant and very active biomass that contributed to high efficiencies on color removal.

  2. Microbial dynamics during azo dye degradation in a UASB reactor supplied with yeast extract

    Science.gov (United States)

    Silva, S.Q.; Silva, D.C.; Lanna, M.C.S.; Baeta, B.E.L.; Aquino, S.F.

    2014-01-01

    The present work aimed to investigate the microbial dynamics during the anaerobic treatment of the azo dye blue HRFL in bench scale upflow anaerobic sludge bed (UASB) reactor operated at ambient temperature. Sludge samples were collected under distinct operational phases, when the reactor were stable (low variation of color removal), to assess the effect of glucose and yeast extract as source of carbon and redox mediators, respectively. Reactors performance was evaluated based on COD (chemical oxygen demand) and color removal. The microbial dynamics were investigated by PCR-DGGE (Polimerase Chain Reaction - Denaturing Gradient of Gel Electrophoresis) technique by comparing the 16S rDNA profiles among samples. The results suggest that the composition of microorganisms changed from the beginning to the end of the reactor operation, probably in response to the presence of azo dye and/or its degradation byproducts. Despite the highest efficiency of color removal was observed in the presence of 500 mg/L of yeast extract (up to 93%), there were no differences regarding the microbial profiles that could indicate a microbial selection by the yeast extract addition. On the other hand Methosarcina barkeri was detected only in the end of operation when the best efficiencies on color removal occurred. Nevertheless the biomass selection observed in the last stages of UASB operation is probably a result of the washout of the sludge in response of accumulation of aromatic amines which led to tolerant and very active biomass that contributed to high efficiencies on color removal. PMID:25763018

  3. Ruminal degradation kinetic of Brachiaria brizantha silages with different microbial additives

    Directory of Open Access Journals (Sweden)

    Odimári Pricila Pires do Prado

    2014-02-01

    Full Text Available This study aimed to determine the carbohydrate fractions and estimate ruminal fermentation kinetics parameters of silages Brachiaria brizantha cv. Marandu with the inclusion of two microbial additives: Additive LPPP Pasture (Lactobacillus plantarum and Pediococcus pentosaceus and additive BSLPPA Pasture (Bacillus subtilis, Lactobacillus plantarum and Pediococcus acidilactici. The experimental design was completely randomized with three different silages and three replications per silage. The silos were opened after 34 days of fermentation and then sent for laboratory analysis. For the fractionation of carbohydrates were determined total carbohydrates (TC, non-fiber carbohydrates (NFC, fractions A + B1 (fractions of fast and average ruminal degradation, B2 fraction (fraction slowly degraded in the rumen and fraction C (carbohydrates no digestible in the rumen. The gas production data were fitted to a logistic model bicompartimental. There was no difference in the values of the variables of fiber degradation (FC kinetic and no-fiber carbohydrates (NFC of the silages. However, silages Brachiaria brizantha cv. Marandu with use of additives LPPP and BSLPPA had higher fractions of digestible carbohydrates, reducing total carbohydrates and low indigestible fiber fraction of carbohydrates. Thus, the two microbial additives improved the nutritional value of silage Marandu-grass.

  4. Adaptability of microbial inoculators and their contribution to degradation of mineral oil and PAHs

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Five dominant bacteria strains(Acetobacter sp., Alcaligenes sp., Micrococcus sp., Arthrobacter sp. and Bacillus sp.) and five fungi strains (Cephalosporium sp. I, Cephalosporium sp. Ⅱ, Aspergillus sp. Ⅰ, Aspergillus sp. Ⅱ and Fusarium sp.) isolated from petroleum-contaminated soil were used to assess the potential capability of mineral oil and PAH enhanced degradation separately and jointly using the batch liquid medium cultivation with diesel oil spiked at 1000 mg/L. The experiment was performed on a reciprocal shaker in the darkness at 25℃ to 30℃ for 100 d. The dynamic variation in the activity of microbial inoculators in each treatment and the degradation of the target pollutants during the period of experiment were monitored. Results showed a more rapid biodegradation of mineral oil and PAHs at the beginning of the experiment (about 20 d) by dominant bacteria, fungi and their mixture than that of the indigenous microorganisms, however, thereafter an opposite trend was exhibited that the removal ratio by indigenous microorganisms was superior to any other dominant treatments and the tendency lasted till the end of the experiment, indicating the limited competitive capability of dominant microorganisms to degrade the contaminants, and the natural selection of indigenous microorganisms for use in the removal of the contaminants. At the end of the experiment, the removal ratio of mineral oil ranged from 56.8 % to 79.2 % and PAHs ranged from 96.8 % to 99.1% in each treatment by microbial inoculators.

  5. Microbial degradation and its influence on components of coalbed gases in Enhong syncline, China

    Institute of Scientific and Technical Information of China (English)

    Lan Fengjuan; Qin Yong; Li Ming; Tang Yonghong; Guo Chen; Zhang Fei

    2013-01-01

    Coalbed gases (CBG) in Enhong syncline are characterized by high concentration of C2+ (C2-5),with the highest content of ethane over 30%.However,the concentrations of C2+ are not evenly distributed in the syncline.Based on the analysis of δ13C1,δ13C2,δ13C3,δ13CO2,δDcH4 of CBG and their origin diagrams in the normal and abnormal areas,this research shows that gases in both areas are thermogenic gases and the reason for the uneven distribution of C2+ is that the microbial degradation action on gases is stronger in the normal area than in the abnormal area.The secondary biologic gases in the normal area are mainly characterized by that the carbon isotopes become obviously lighter in methane and become heavier in ethane,whereas the molecular and isotopic compositions of CO2 change little.These features indicate that the secondary biologic gases are mainly generated by the microbial degradation of C2+,not generated by the reduction of CO2.The degradation process is selective to make the residual ethane being enriched in 13C and the generated methane rich in 12C.

  6. Methanogenic degradation of lignin-derived monoaromatic compounds by microbial enrichments from rice paddy field soil.

    Science.gov (United States)

    Kato, Souichiro; Chino, Kanako; Kamimura, Naofumi; Masai, Eiji; Yumoto, Isao; Kamagata, Yoichi

    2015-01-01

    Anaerobic degradation of lignin-derived aromatics is an important metabolism for carbon and nutrient cycles in soil environments. Although there are some studies on degradation of lignin-derived aromatics by nitrate- and sulfate-reducing bacteria, knowledge on their degradation under methanogenic conditions are quite limited. In this study, methanogenic microbial communities were enriched from rice paddy field soil with lignin-derived methoxylated monoaromatics (vanillate and syringate) and their degradation intermediates (protocatechuate, catechol, and gallate) as the sole carbon and energy sources. Archaeal community analysis disclosed that both aceticlastic (Methanosarcina sp.) and hydrogenotrophic (Methanoculleus sp. and Methanocella sp.) methanogens dominated in all of the enrichments. Bacterial community analysis revealed the dominance of acetogenic bacteria (Sporomusa spp.) only in the enrichments on the methoxylated aromatics, suggesting that Sporomusa spp. initially convert vanillate and syringate into protocatechuate and gallate, respectively, with acetogenesis via O-demethylation. As the putative ring-cleavage microbes, bacteria within the phylum Firmicutes were dominantly detected from all of the enrichments, while the dominant phylotypes were not identical between enrichments on vanillate/protocatechuate/catechol (family Peptococcaceae bacteria) and on syringate/gallate (family Ruminococcaceae bacteria). This study demonstrates the importance of cooperation among acetogens, ring-cleaving fermenters/syntrophs and aceticlastic/hydrogenotrophic methanogens for degradation of lignin-derived aromatics under methanogenic conditions. PMID:26399549

  7. Response of aerobic granular sludge to the long-term presence to nanosilver in sequencing batch reactors: Reactor performance, sludge property, microbial activity and community

    International Nuclear Information System (INIS)

    The increasing use of silver nanoparticles (Ag NPs) raises concerns about their potential toxic effects on the environment. Granular shape sludge is a special type of microbial aggregate. The response of aerobic granular sludge (AGS) to the long-term presence of Ag NPs has not been well studied. In this study, AGS was exposed to 5 and 50 mg/L Ag NPs in sequence batch reactors (SBRs) for 69 days, and its response was evaluated based on the sludge properties, microbial activity and community, and reactor performance. The results showed that Ag NPs caused inhibition to microbial activities of AGS from Day 35. At the end of 69 days of Ag NPs exposure, the microbial activity of AGS was significantly inhibited in terms of inhibitions of the ammonia oxidizing rate (33.0%), respiration rate (17.7% and 45.6%) and denitrification rate (6.8%), as well as decreases in the ammonia mono-oxygenase and nitrate reductase activities. During the long-term exposure, the AGS maintained its granular shape and large granule size (approximately 900 μm); the microbial community of AGS slightly changed, but the dominant microbial population remained. Overall, the AGS tolerated the toxicity of Ag NPs well, but a long-term exposure may produce chronic toxicity to the AGS, which is concerning. - Highlights: • AGS demonstrated a good tolerance to the long-term presence of Ag NPs. • Ag NPs did not produce acute toxicity but cause chronic toxicity to AGS. • AGS maintained granular shape, granule size and good settling ability. • The microbial community of AGS slightly changed after long-term Ag NPs exposure

  8. The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico coastal microbial communities after the Deepwater Horizon oil spill

    Directory of Open Access Journals (Sweden)

    Anthony D. Kappell

    2014-05-01

    Full Text Available The Deepwater Horizon (DWH blowout resulted in oil transport, including polycyclic aromatic hydrocarbons (PAHs to the Gulf of Mexico shoreline. The microbial communities of these shorelines are thought to be responsible for the intrinsic degradation of PAHs. To investigate the Gulf Coast beach microbial community response to hydrocarbon exposure, we examined the functional gene diversity, bacterial community composition, and PAH degradation capacity of a heavily oiled and non-oiled beach following the oil exposure. With a non-expression functional gene microarray targeting 539 gene families, we detected 28,748 coding sequences. Of these sequences, 10% were uniquely associated with the severely oil-contaminated beach and 6.0% with the non-oiled beach. There was little variation in the functional genes detected between the two beaches; however the relative abundance of functional genes involved in oil degradation pathways, including PAHs, were greater in the oiled beach. The microbial PAH degradation potentials of both beaches, were tested in mesocosms. Mesocosms were constructed in glass columns using sands with native microbial communities, circulated with artificial sea water and challenged with a mixture of PAHs. The low-molecular weight PAHs, fluorene and naphthalene, showed rapid depletion in all mesocosms while the high-molecular weight benzo[α]pyrene was not degraded by either microbial community. Both the heavily oiled and the non-impacted coastal communities showed little variation in their biodegradation ability for low molecular weight PAHs. Massively-parallel sequencing of 16S rRNA genes from mesocosm DNA showed that known PAH degraders and genera frequently associated with oil hydrocarbon degradation represented a major portion of the bacterial community. The observed similar response by microbial communities from beaches with a different recent history of oil exposure suggests that Gulf Coast beach communities are primed for PAH

  9. Impact of sources of environmental degradation on microbial community dynamics in non-polluted and metal-polluted soils.

    Science.gov (United States)

    Epelde, Lur; Martín-Sánchez, Iker; González-Oreja, José A; Anza, Mikel; Gómez-Sagasti, María T; Garbisu, Carlos

    2012-09-01

    Soils are currently being degraded at an alarming rate due to increasing pressure from different sources of environmental degradation. Consequently, we carried out a 4-month microcosm experiment to measure the impact of different sources of environmental degradation (biodiversity loss, nitrogen deposition and climate change) on soil health in a non-polluted (non-degraded) and a heavily metal-polluted (degraded) soil, and to compare their responses. To this aim, we determined a variety of soil microbial properties with potential as bioindicators of soil health: basal respiration; β-glucosaminidase and protease activities; abundance (Q-PCR) of bacterial, fungal and chitinase genes; richness (PCR-DGGE) of fungal and chitinase genes. Non-polluted and metal-polluted soils showed different response microbial dynamics when subjected to sources of environmental degradation. The non-polluted soil appeared resilient to "biodiversity loss" and "climate change" treatments. The metal-polluted soil was probably already too severely affected by the presence of high levels of toxic metals to respond to other sources of stress. Our data together suggests that soil microbial activity and biomass parameters are more sensitive to the applied sources of environmental degradation, showing immediate responses of greater magnitude, while soil microbial diversity parameters do not show such variations.

  10. Mining of hemicellulose and lignin degrading genes from differentially enriched methane producing microbial community.

    Science.gov (United States)

    Pandit, Prabhakar D; Gulhane, Madhuri K; Khardenavis, Anshuman A; Purohit, Hemant J

    2016-09-01

    Study creates a scenario for enrichment and selection of ligno-hemicellulose degrading genotypes with anaerobic bioreactor as a model using rice straw, vegetable waste and food waste as substrates. Relative discrimination analysis showed that the hydrolytic pathways and associated microbial communities for ligno-hemicellulose degradation were dominatingly colonized with rice straw as substrate. The dominating bacteria were Caldicellulosiruptor, Fervidobacterium, Cytophaga, Ruminococcus, Thermotoga associated with hemicellulose degradation and Burkholderia, Pandorea, Sphingomonas, Spirochaeta, Pseudomonas for lignocellulose hydrolysis. This was further supported by the abundance of anaerobic aromatic compound degrading genes along with genes for xylanase and xylosidase in rice straw enriched community. The metagenome analysis data was validated by evaluation of the biochemical methane potential for these substrates. Food waste being most amenable substrate yielded 1410mL of biogas/gVS added whereas, biogas yield of 1160mL/gVS and 1080mL/gVS was observed in presence of vegetable waste and rice straw respectively. PMID:27323244

  11. Effect of elevated CO2 on chlorpyriphos degradation and soil microbial activities in tropical rice soil.

    Science.gov (United States)

    Adak, Totan; Munda, Sushmita; Kumar, Upendra; Berliner, J; Pokhare, Somnath S; Jambhulkar, N N; Jena, M

    2016-02-01

    Impact of elevated CO2 on chlorpyriphos degradation, microbial biomass carbon, and enzymatic activities in rice soil was investigated. Rice (variety Naveen, Indica type) was grown under four conditions, namely, chambered control, elevated CO2 (550 ppm), elevated CO2 (700 ppm) in open-top chambers and open field. Chlorpyriphos was sprayed at 500 g a.i. ha(-1) at maximum tillering stage. Chlorpyriphos degraded rapidly from rice soils, and 88.4% of initially applied chlorpyriphos was lost from the rice soil maintained under elevated CO2 (700 ppm) by day 5 of spray, whereas the loss was 80.7% from open field rice soil. Half-life values of chlorpyriphos under different conditions ranged from 2.4 to 1.7 days with minimum half-life recorded with two elevated CO2 treatments. Increased CO2 concentration led to increase in temperature (1.2 to 1.8 °C) that played a critical role in chlorpyriphos persistence. Microbial biomass carbon and soil enzymatic activities specifically, dehydrogenase, fluorescien diacetate hydrolase, urease, acid phosphatase, and alkaline phosphatase responded positively to elevated CO2 concentrations. Generally, the enzyme activities were highly correlated with each other. Irrespective of the level of CO2, short-term negative influence of chlorpyriphos was observed on soil enzymes till day 7 of spray. Knowledge obtained from this study highlights that the elevated CO2 may negatively influence persistence of pesticide but will have positive effects on soil enzyme activities. PMID:26790432

  12. Degradation of chlorpyrifos in laboratory soil and its impact on soil microbial functional diversity

    Institute of Scientific and Technical Information of China (English)

    FANG Hua; YU Yunlong; CHU Xiaoqiang; WANG Xiuguo; YANG Xiaoe; YU Jingquan

    2009-01-01

    Degradation of chlorpyrifos at different concentrations in soil and its impact on soil microbial functional diversity were investigated under laboratory conditions. The degradation half-lives of chlorpyrifos at levels of 4, 8, and 12 mg/kg in soil were calculated to be 14.3, 16.7, and 18.0 d, respectively. The Biolog study showed that average well color development (AWCD) in soils was significantly (P < 0.05) inhibited by chlorpyrifos within the first two weeks and thereafter recovered to the similar level as the control. A similar variation in the diversity indices (Simpson index 1/D and McIntosh index U) in chlorpyrifos-treated soils was observed, no significant difference in the Shannon-Wiener index H' was found in these soils. With increasing chlorpyrifos concentration, the half-lives of chlorpyrifos were significantly (P ≤ 0.05) extended and its inhibitory effects on soil microorganisms were aggravated. It is concluded that chlorpyrifos residues in soil had a temporary or short-term inhibitory effect on soil microbial functional diversity.

  13. Effect of elevated CO2 on chlorpyriphos degradation and soil microbial activities in tropical rice soil.

    Science.gov (United States)

    Adak, Totan; Munda, Sushmita; Kumar, Upendra; Berliner, J; Pokhare, Somnath S; Jambhulkar, N N; Jena, M

    2016-02-01

    Impact of elevated CO2 on chlorpyriphos degradation, microbial biomass carbon, and enzymatic activities in rice soil was investigated. Rice (variety Naveen, Indica type) was grown under four conditions, namely, chambered control, elevated CO2 (550 ppm), elevated CO2 (700 ppm) in open-top chambers and open field. Chlorpyriphos was sprayed at 500 g a.i. ha(-1) at maximum tillering stage. Chlorpyriphos degraded rapidly from rice soils, and 88.4% of initially applied chlorpyriphos was lost from the rice soil maintained under elevated CO2 (700 ppm) by day 5 of spray, whereas the loss was 80.7% from open field rice soil. Half-life values of chlorpyriphos under different conditions ranged from 2.4 to 1.7 days with minimum half-life recorded with two elevated CO2 treatments. Increased CO2 concentration led to increase in temperature (1.2 to 1.8 °C) that played a critical role in chlorpyriphos persistence. Microbial biomass carbon and soil enzymatic activities specifically, dehydrogenase, fluorescien diacetate hydrolase, urease, acid phosphatase, and alkaline phosphatase responded positively to elevated CO2 concentrations. Generally, the enzyme activities were highly correlated with each other. Irrespective of the level of CO2, short-term negative influence of chlorpyriphos was observed on soil enzymes till day 7 of spray. Knowledge obtained from this study highlights that the elevated CO2 may negatively influence persistence of pesticide but will have positive effects on soil enzyme activities.

  14. Degradation of oxytetracycline and its impacts on biogas-producing microbial community structure.

    Science.gov (United States)

    Coban, Halil; Ertekin, Emine; Ince, Orhan; Turker, Gokhan; Akyol, Çağrı; Ince, Bahar

    2016-07-01

    The effect of veterinary antibiotics in anaerobic digesters is a concern where methane production efficiency is highly dependent on microbial community structure. In this study, both anaerobic degradation of a common veterinary antibiotic, oxytetracycline (OTC), and its effects on an anaerobic digester microbial community were investigated. Qualitative and quantitative molecular tools were used to monitor changes in microbial community structure during a 60-day batch incubation period of cow manure with the addition of different concentrations of the antibiotic. Molecular data were interpreted by a further redundancy analysis as a multivariate statistics approach. At the end of the experiment, approximately 48, 33, and 17 % of the initially added 50, 100, and 200 mg l(-1) of OTC was still present in the serum bottles which reduced the biogas production via accumulation of some of the volatile fatty acids (VFAs). Biogas production was highly correlated with Methanobacteriales and Methanosarcinales gene copy numbers, and those parameters were negatively affected with oxytetracycline and VFA concentrations. PMID:26974525

  15. Decolorization and biodegradation of azo dye, reactive blue 59 by aerobic granules.

    Science.gov (United States)

    Kolekar, Yogesh M; Nemade, Harshal N; Markad, Vijay L; Adav, Sunil S; Patole, Milind S; Kodam, Kisan M

    2012-01-01

    The present study deals with development of aerobic granules from textile wastewater sludge and challenged with different concentration of reactive blue 59 (RB59) to test their dye degradation potential. The granules efficiently degraded reactive blue 59 and also sustained higher dye loading of up to 5.0 g l(-1). The significant induction of enzymes azoreductase and cytochrome P-450 indicated their prominent role in the dye degradation while genotoxicity studies demonstrated that the biotransformed product of the dye as non-toxic. The microbial community of the textile dyes degrading aerobic sludge granules analyzed by polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE), revealed significantly diverse dye degrading microbial community belonging to alpha-, beta-, and gamma-proteobacteria.

  16. Microbial degradation of plant leachate alters lignin phenols and trihalomethane precursors

    Science.gov (United States)

    Pellerin, Brian A.; Hernes, Peter J.; Saraceno, John Franco; Spencer, Robert G.M.; Bergamaschi, Brian A.

    2010-01-01

    Although the importance of vascular plant-derived dissolved organic carbon (DOC) in freshwater systems has been studied, the role of leached DOC as precursors of disinfection byproducts (DBPs) during drinking water treatment is not well known. Here we measured the propensity of leachates from four crops and four aquatic macrophytes to form trihalomethanes (THMs)—a regulated class of DBPs—before and after 21 d of microbial degradation. We also measured lignin phenol content and specific UV absorbance (SUVA254) to test the assumption that aromatic compounds from vascular plants are resistant to microbial degradation and readily form DBPs. Leaching solubilized 9 to 26% of total plant carbon, which formed 1.93 to 6.72 mmol THM mol C-1 However, leachate DOC concentrations decreased by 85 to 92% over the 21-d incubation, with a concomitant decrease of 67 to 92% in total THM formation potential. Carbon-normalized THM yields in the residual DOC pool increased by 2.5 times on average, consistent with the preferential uptake of nonprecursor material. Lignin phenol concentrations decreased by 64 to 96% over 21 d, but a lack of correlation between lignin content and THM yields or SUVA254 suggested that lignin-derived compounds are not the source of increased THM precursor yields in the residual DOC pool. Our results indicate that microbial carbon utilization alters THM precursors in ecosystems with direct plant leaching, but more work is needed to identify the specific dissolved organic matter components with a greater propensity to form DBPs and affect watershed management, drinking water quality, and human health.

  17. Post-treatment of anaerobically degraded azo dye Acid Red 18 using aerobic moving bed biofilm process: enhanced removal of aromatic amines.

    Science.gov (United States)

    Koupaie, E Hosseini; Moghaddam, M R Alavi; Hashemi, S H

    2011-11-15

    The application of aerobic moving bed biofilm process as post-treatment of anaerobically degraded azo dye Acid Red 18 was investigated in this study. The main objective of this work was to enhance removal of anaerobically formed the dye aromatic metabolites. Three separate sequential treatment systems were operated with different initial dye concentrations of 100, 500 and 1000 mg/L. Each treatment system consisted of an anaerobic sequencing batch reactor (An-SBR) followed by an aerobic moving bed sequencing batch biofilm reactor (MB-SBBR). Up to 98% of the dye decolorization and more than 80% of the COD removal occurred anaerobically. The obtained results suggested no significant difference in COD removal as well as the dye decolorization efficiency using three An-SBRs receiving different initial dye concentrations. Monitoring the dye metabolites through HPLC suggested that more than 80% of anaerobically formed 1-naphthylamine-4-sulfonate was completely removed in the aerobic biofilm reactors. Based on COD analysis results, at least 65-72% of the dye total metabolites were mineralized during the applied treatment systems. According to the measured biofilm mass and also based on respiration-inhibition test results, increasing the initial dye concentration inhibited the growth and final mass of the attached-growth biofilm in MB-SBBRs.

  18. Identification of microbial populations driving biopolymer degradation in acidic peatlands by metatranscriptomic analysis.

    Science.gov (United States)

    Ivanova, Anastasia A; Wegner, Carl-Eric; Kim, Yongkyu; Liesack, Werner; Dedysh, Svetlana N

    2016-10-01

    Northern peatlands play a crucial role in the global carbon balance, serving as a persistent sink for atmospheric CO2 and a global carbon store. Their most extensive type, Sphagnum-dominated acidic peatlands, is inhabited by microorganisms with poorly understood degradation capabilities. Here, we applied a combination of barcoded pyrosequencing of SSU rRNA genes and Illumina RNA-Seq of total RNA (metatranscriptomics) to identify microbial populations and enzymes involved in degrading the major components of Sphagnum-derived litter and exoskeletons of peat-inhabiting arthropods: cellulose, xylan, pectin and chitin. Biopolymer addition to peat induced a threefold to fivefold increase in bacterial cell numbers. Functional community profiles of assembled mRNA differed between experimental treatments. In particular, pectin and xylan triggered increased transcript abundance of genes involved in energy metabolism and central carbon metabolism, such as glycolysis and TCA cycle. Concurrently, the substrate-induced activity of bacteria on these two biopolymers stimulated grazing of peat-inhabiting protozoa. Alveolata (ciliates) was the most responsive protozoa group as confirmed by analysis of both SSU rRNA genes and SSU rRNA. A stimulation of alphaproteobacterial methanotrophs on pectin was consistently shown by rRNA and mRNA data. Most likely, their significant enrichment was due to the utilization of methanol released during the degradation of pectin. Analysis of SSU rRNA and total mRNA revealed a specific response of Acidobacteria and Actinobacteria to chitin and pectin, respectively. Relatives of Telmatobacter bradus were most responsive among the Acidobacteria, while the actinobacterial response was primarily affiliated with Frankiales and Propionibacteriales. The expression of a wide repertoire of carbohydrate-active enzymes (CAZymes) corresponded well to the detection of a highly diverse peat-inhabiting microbial community, which is dominated by yet uncultivated

  19. Influence of rhizosphere microbial ecophysiological parameters from different plant species on butachlor degradation in a riparian soil.

    Science.gov (United States)

    Yang, Changming; Wang, Mengmeng; Li, Jianhua

    2012-01-01

    Biogeochemical processes in riparian zones regulate contaminant movement to receiving waters and often mitigate the impact of upland sources of contaminants on water quality. However, little research has been reported on the microbial process and degradation potential of herbicide in a riparian soil. Field sampling and incubation experiments were conducted to investigate differences in microbial parameters and butachlor degradation in the riparian soil from four plant communities in Chongming Island, China. The results suggested that the rhizosphere soil had significantly higher total organic C and water-soluble organic C relative to the nonrhizosphere soil. Differences in rhizosphere microbial community size and physiological parameters among vegetation types were significant. The rhizosphere soil from the mixed community of Phragmites australis and Acorus calamus had the highest microbial biomass and biochemical activity, followed by A. calamus, P. australis and Zizania aquatica. Microbial ATP, dehydrogenase activity (DHA), and basal soil respiration (BSR) in the rhizosphere of the mixed community of P. australis and A. calamus were 58, 72, and 62% higher, respectively, than in the pure P. australis community. Compared with the rhizosphere soil of the pure plant communities, the mixed community of P. australis and A. calamus displayed a significantly greater degradation rate of butachlor in the rhizosphere soil. Residual butachlor concentrations in rhizosphere soil of the mixed community of P. australis and A. calamus and were 48, 63, and 68% lower than three pure plant communities, respectively. Butachlor degradation rates were positively correlated to microbial ATP, DHA, and BSR, indicating that these microbial parameters may be useful in assessing butachlor degradation potential in the riparian soil.

  20. Anaerobic Microbial Degradation of Hydrocarbons: From Enzymatic Reactions to the Environment.

    Science.gov (United States)

    Rabus, Ralf; Boll, Matthias; Heider, Johann; Meckenstock, Rainer U; Buckel, Wolfgang; Einsle, Oliver; Ermler, Ulrich; Golding, Bernard T; Gunsalus, Robert P; Kroneck, Peter M H; Krüger, Martin; Lueders, Tillmann; Martins, Berta M; Musat, Florin; Richnow, Hans H; Schink, Bernhard; Seifert, Jana; Szaleniec, Maciej; Treude, Tina; Ullmann, G Matthias; Vogt, Carsten; von Bergen, Martin; Wilkes, Heinz

    2016-01-01

    Hydrocarbons are abundant in anoxic environments and pose biochemical challenges to their anaerobic degradation by microorganisms. Within the framework of the Priority Program 1319, investigations funded by the Deutsche Forschungsgemeinschaft on the anaerobic microbial degradation of hydrocarbons ranged from isolation and enrichment of hitherto unknown hydrocarbon-degrading anaerobic microorganisms, discovery of novel reactions, detailed studies of enzyme mechanisms and structures to process-oriented in situ studies. Selected highlights from this program are collected in this synopsis, with more detailed information provided by theme-focused reviews of the special topic issue on 'Anaerobic biodegradation of hydrocarbons' [this issue, pp. 1-244]. The interdisciplinary character of the program, involving microbiologists, biochemists, organic chemists and environmental scientists, is best exemplified by the studies on alkyl-/arylalkylsuccinate synthases. Here, research topics ranged from in-depth mechanistic studies of archetypical toluene-activating benzylsuccinate synthase, substrate-specific phylogenetic clustering of alkyl-/arylalkylsuccinate synthases (toluene plus xylenes, p-cymene, p-cresol, 2-methylnaphthalene, n-alkanes), stereochemical and co-metabolic insights into n-alkane-activating (methylalkyl)succinate synthases to the discovery of bacterial groups previously unknown to possess alkyl-/arylalkylsuccinate synthases by means of functional gene markers and in situ field studies enabled by state-of-the-art stable isotope probing and fractionation approaches. Other topics are Mo-cofactor-dependent dehydrogenases performing O2-independent hydroxylation of hydrocarbons and alkyl side chains (ethylbenzene, p-cymene, cholesterol, n-hexadecane), degradation of p-alkylated benzoates and toluenes, glycyl radical-bearing 4-hydroxyphenylacetate decarboxylase, novel types of carboxylation reactions (for acetophenone, acetone, and potentially also benzene and

  1. Anaerobic Microbial Degradation of Hydrocarbons: From Enzymatic Reactions to the Environment.

    Science.gov (United States)

    Rabus, Ralf; Boll, Matthias; Heider, Johann; Meckenstock, Rainer U; Buckel, Wolfgang; Einsle, Oliver; Ermler, Ulrich; Golding, Bernard T; Gunsalus, Robert P; Kroneck, Peter M H; Krüger, Martin; Lueders, Tillmann; Martins, Berta M; Musat, Florin; Richnow, Hans H; Schink, Bernhard; Seifert, Jana; Szaleniec, Maciej; Treude, Tina; Ullmann, G Matthias; Vogt, Carsten; von Bergen, Martin; Wilkes, Heinz

    2016-01-01

    Hydrocarbons are abundant in anoxic environments and pose biochemical challenges to their anaerobic degradation by microorganisms. Within the framework of the Priority Program 1319, investigations funded by the Deutsche Forschungsgemeinschaft on the anaerobic microbial degradation of hydrocarbons ranged from isolation and enrichment of hitherto unknown hydrocarbon-degrading anaerobic microorganisms, discovery of novel reactions, detailed studies of enzyme mechanisms and structures to process-oriented in situ studies. Selected highlights from this program are collected in this synopsis, with more detailed information provided by theme-focused reviews of the special topic issue on 'Anaerobic biodegradation of hydrocarbons' [this issue, pp. 1-244]. The interdisciplinary character of the program, involving microbiologists, biochemists, organic chemists and environmental scientists, is best exemplified by the studies on alkyl-/arylalkylsuccinate synthases. Here, research topics ranged from in-depth mechanistic studies of archetypical toluene-activating benzylsuccinate synthase, substrate-specific phylogenetic clustering of alkyl-/arylalkylsuccinate synthases (toluene plus xylenes, p-cymene, p-cresol, 2-methylnaphthalene, n-alkanes), stereochemical and co-metabolic insights into n-alkane-activating (methylalkyl)succinate synthases to the discovery of bacterial groups previously unknown to possess alkyl-/arylalkylsuccinate synthases by means of functional gene markers and in situ field studies enabled by state-of-the-art stable isotope probing and fractionation approaches. Other topics are Mo-cofactor-dependent dehydrogenases performing O2-independent hydroxylation of hydrocarbons and alkyl side chains (ethylbenzene, p-cymene, cholesterol, n-hexadecane), degradation of p-alkylated benzoates and toluenes, glycyl radical-bearing 4-hydroxyphenylacetate decarboxylase, novel types of carboxylation reactions (for acetophenone, acetone, and potentially also benzene and

  2. Application of high OLR-fed aerobic granules for the treatment of low-strength wastewater: Performance, granule morphology and microbial community

    Institute of Scientific and Technical Information of China (English)

    Jingyun Ma; Xiangchun Quan; Huai Li

    2013-01-01

    Aerobic granules,pre-cultivated at the organic loading rate (OLR) of 3.0 kg COD/(m3·day),were used to treat low-strength wastewater in two sequencing batch reactors at low OLRs of 1.2 and 0.6 kg COD/(m3·day),respectively.Reactor performance,evolution of granule morphology,structure and microbial community at low OLRs under long-term operation (130 days) were investigated.Results showed that low OLRs did not cause significant damage to granule structure as a dominant granule morphology with size over 540 μm was maintained throughout the operation.Aerobic granules at sizes of about 750 μm were finally obtained at the low OLRs.The granule reactors operated at low OLRs demonstrated effective COD and ammonia removals (above 90%),smaller granule sizes and less biomass.The contents of extracellular polymeric substances in the granules were decreased while the ratios of exopolysaccharide/exoprotein were increased (above 1.0).The granules cultivated at the low OLRs showed a smoother surface and more compact structure than the seeded granules.A significant shift in microbial community was observed but the microbial diversity remained relatively stable.Confocal Laser Scanning Microscopy observation showed that the live cells were spread throughout the whole granule,while the dead cells were mainly concentrated in the outer layer of the granule,and the proteins,polysaccharides and lipids were mainly located in the central regime of the granule.In conclusion,granules cultivated at high OLRs show potential for treating low-strength organic wastewater steadily under long-term operation.

  3. Application of high OLR-fed aerobic granules for the treatment of low-strength wastewater: performance, granule morphology and microbial community.

    Science.gov (United States)

    Ma, Jingyun; Quan, Xiangchun; Li, Huai

    2013-08-01

    Aerobic granules, pre-cultivated at the organic loading rate (OLR) of 3.0 kg COD/(m3 x day), were used to treat low-strength wastewater in two sequencing batch reactors at low OLRs of 1.2 and 0.6 kg COD/(m3 x day), respectively. Reactor performance, evolution of granule morphology, structure and microbial community at low OLRs under long-term operation (130 days) were investigated. Results showed that low OLRs did not cause significant damage to granule structure as a dominant granule morphology with size over 540 microm was maintained throughout the operation. Aerobic granules at sizes of about 750 microm were finally obtained at the low OLRs. The granule reactors operated at low OLRs demonstrated effective COD and ammonia removals (above 90%), smaller granule sizes and less biomass. The contents of extracellular polymeric substances in the granules were decreased while the ratios of exopolysaccharide/exoprotein were increased (above 1.0). The granules cultivated at the low OLRs showed a smoother surface and more compact structure than the seeded granules. A significant shift in microbial community was observed but the microbial diversity remained relatively stable. Confocal Laser Scanning Microscopy observation showed that the live cells were spread throughout the whole granule, while the dead cells were mainly concentrated in the outer layer of the granule, and the proteins, polysaccharides and lipids were mainly located in the central regime of the granule. In conclusion, granules cultivated at high OLRs show potential for treating low-strength organic wastewater steadily under long-term operation. PMID:24520692

  4. Microbial Community Structure and Diversity in an Integrated System of Anaerobic-Aerobic Reactors and a Constructed Wetland for the Treatment of Tannery Wastewater in Modjo, Ethiopia

    Science.gov (United States)

    Desta, Adey Feleke; Assefa, Fassil; Leta, Seyoum; Stomeo, Francesca; Wamalwa, Mark; Njahira, Moses; Appolinaire, Djikeng

    2014-01-01

    A culture-independent approach was used to elucidate the microbial diversity and structure in the anaerobic-aerobic reactors integrated with a constructed wetland for the treatment of tannery wastewater in Modjo town, Ethiopia. The system has been running with removal efficiencies ranging from 94%–96% for COD, 91%–100% for SO42- and S2-, 92%–94% for BOD, 56%–82% for total Nitrogen and 2%–90% for NH3-N. 16S rRNA gene clone libraries were constructed and microbial community assemblies were determined by analysis of a total of 801 unique clone sequences from all the sites. Operational Taxonomic Unit (OTU) - based analysis of the sequences revealed highly diverse communities in each of the reactors and the constructed wetland. A total of 32 phylotypes were identified with the dominant members affiliated to Clostridia (33%), Betaproteobacteria (10%), Bacteroidia (10%), Deltaproteobacteria (9%) and Gammaproteobacteria (6%). Sequences affiliated to the class Clostridia were the most abundant across all sites. The 801 sequences were assigned to 255 OTUs, of which 3 OTUs were shared among the clone libraries from all sites. The shared OTUs comprised 80 sequences belonging to Clostridiales Family XIII Incertae Sedis, Bacteroidetes and unclassified bacterial group. Significantly different communities were harbored by the anaerobic, aerobic and rhizosphere sites of the constructed wetland. Numerous representative genera of the dominant bacterial classes obtained from the different sample sites of the integrated system have been implicated in the removal of various carbon- containing pollutants of natural and synthetic origins. To our knowledge, this is the first report of microbial community structure in tannery wastewater treatment plant from Ethiopia. PMID:25541981

  5. Microbial community structure and diversity in an integrated system of anaerobic-aerobic reactors and a constructed wetland for the treatment of tannery wastewater in Modjo, Ethiopia.

    Directory of Open Access Journals (Sweden)

    Adey Feleke Desta

    Full Text Available A culture-independent approach was used to elucidate the microbial diversity and structure in the anaerobic-aerobic reactors integrated with a constructed wetland for the treatment of tannery wastewater in Modjo town, Ethiopia. The system has been running with removal efficiencies ranging from 94%-96% for COD, 91%-100% for SO4(2- and S(2-, 92%-94% for BOD, 56%-82% for total Nitrogen and 2%-90% for NH3-N. 16S rRNA gene clone libraries were constructed and microbial community assemblies were determined by analysis of a total of 801 unique clone sequences from all the sites. Operational Taxonomic Unit (OTU--based analysis of the sequences revealed highly diverse communities in each of the reactors and the constructed wetland. A total of 32 phylotypes were identified with the dominant members affiliated to Clostridia (33%, Betaproteobacteria (10%, Bacteroidia (10%, Deltaproteobacteria (9% and Gammaproteobacteria (6%. Sequences affiliated to the class Clostridia were the most abundant across all sites. The 801 sequences were assigned to 255 OTUs, of which 3 OTUs were shared among the clone libraries from all sites. The shared OTUs comprised 80 sequences belonging to Clostridiales Family XIII Incertae Sedis, Bacteroidetes and unclassified bacterial group. Significantly different communities were harbored by the anaerobic, aerobic and rhizosphere sites of the constructed wetland. Numerous representative genera of the dominant bacterial classes obtained from the different sample sites of the integrated system have been implicated in the removal of various carbon- containing pollutants of natural and synthetic origins. To our knowledge, this is the first report of microbial community structure in tannery wastewater treatment plant from Ethiopia.

  6. Microbial colonization and degradation of polyethylene and biodegradable plastic bags in temperate fine-grained organic-rich marine sediments.

    Science.gov (United States)

    Nauendorf, Alice; Krause, Stefan; Bigalke, Nikolaus K; Gorb, Elena V; Gorb, Stanislav N; Haeckel, Matthias; Wahl, Martin; Treude, Tina

    2016-02-15

    To date, the longevity of plastic litter at the sea floor is poorly constrained. The present study compares colonization and biodegradation of plastic bags by aerobic and anaerobic benthic microbes in temperate fine-grained organic-rich marine sediments. Samples of polyethylene and biodegradable plastic carrier bags were incubated in natural oxic and anoxic sediments from Eckernförde Bay (Western Baltic Sea) for 98 days. Analyses included (1) microbial colonization rates on the bags, (2) examination of the surface structure, wettability, and chemistry, and (3) mass loss of the samples during incubation. On average, biodegradable plastic bags were colonized five times higher by aerobic and eight times higher by anaerobic microbes than polyethylene bags. Both types of bags showed no sign of biodegradation during this study. Therefore, marine sediment in temperate coastal zones may represent a long-term sink for plastic litter and also supposedly compostable material. PMID:26790603

  7. Post-treatment of anaerobically degraded azo dye Acid Red 18 using aerobic moving bed biofilm process: Enhanced removal of aromatic amines

    Energy Technology Data Exchange (ETDEWEB)

    Hosseini Koupaie, E., E-mail: ehssan.hosseini.k@gmail.com [Civil and Environmental Engineering Department, Amirkabir University of Technology (AUT), Hafez Ave., Tehran 15875-4413 (Iran, Islamic Republic of); Alavi Moghaddam, M.R., E-mail: alavim@yahoo.com [Civil and Environmental Engineering Department, Amirkabir University of Technology (AUT), Hafez Ave., Tehran 15875-4413 (Iran, Islamic Republic of); Hashemi, S.H., E-mail: h_hashemi@sbu.ac.ir [Environmental Science Research Institute, Shahid Beheshti University, Tehran (Iran, Islamic Republic of)

    2011-11-15

    Highlights: {yields} Biofilm process was applied as post-treatment of anaerobically degraded an azo dye. {yields} More than 65% of the dye total metabolites was completely mineralized. {yields} Based on HPLC analysis, more than 80% of 1-naphthylamine-4-sulfonate was removed. {yields} Inhibition of biofilm growth was increased with increasing the initial dye concentration. {yields} Considerable porous morphology was observed in the SEM photographs of the biofilm. - Abstract: The application of aerobic moving bed biofilm process as post-treatment of anaerobically degraded azo dye Acid Red 18 was investigated in this study. The main objective of this work was to enhance removal of anaerobically formed the dye aromatic metabolites. Three separate sequential treatment systems were operated with different initial dye concentrations of 100, 500 and 1000 mg/L. Each treatment system consisted of an anaerobic sequencing batch reactor (An-SBR) followed by an aerobic moving bed sequencing batch biofilm reactor (MB-SBBR). Up to 98% of the dye decolorization and more than 80% of the COD removal occurred anaerobically. The obtained results suggested no significant difference in COD removal as well as the dye decolorization efficiency using three An-SBRs receiving different initial dye concentrations. Monitoring the dye metabolites through HPLC suggested that more than 80% of anaerobically formed 1-naphthylamine-4-sulfonate was completely removed in the aerobic biofilm reactors. Based on COD analysis results, at least 65-72% of the dye total metabolites were mineralized during the applied treatment systems. According to the measured biofilm mass and also based on respiration-inhibition test results, increasing the initial dye concentration inhibited the growth and final mass of the attached-growth biofilm in MB-SBBRs.

  8. Post-treatment of anaerobically degraded azo dye Acid Red 18 using aerobic moving bed biofilm process: Enhanced removal of aromatic amines

    International Nuclear Information System (INIS)

    Highlights: → Biofilm process was applied as post-treatment of anaerobically degraded an azo dye. → More than 65% of the dye total metabolites was completely mineralized. → Based on HPLC analysis, more than 80% of 1-naphthylamine-4-sulfonate was removed. → Inhibition of biofilm growth was increased with increasing the initial dye concentration. → Considerable porous morphology was observed in the SEM photographs of the biofilm. - Abstract: The application of aerobic moving bed biofilm process as post-treatment of anaerobically degraded azo dye Acid Red 18 was investigated in this study. The main objective of this work was to enhance removal of anaerobically formed the dye aromatic metabolites. Three separate sequential treatment systems were operated with different initial dye concentrations of 100, 500 and 1000 mg/L. Each treatment system consisted of an anaerobic sequencing batch reactor (An-SBR) followed by an aerobic moving bed sequencing batch biofilm reactor (MB-SBBR). Up to 98% of the dye decolorization and more than 80% of the COD removal occurred anaerobically. The obtained results suggested no significant difference in COD removal as well as the dye decolorization efficiency using three An-SBRs receiving different initial dye concentrations. Monitoring the dye metabolites through HPLC suggested that more than 80% of anaerobically formed 1-naphthylamine-4-sulfonate was completely removed in the aerobic biofilm reactors. Based on COD analysis results, at least 65-72% of the dye total metabolites were mineralized during the applied treatment systems. According to the measured biofilm mass and also based on respiration-inhibition test results, increasing the initial dye concentration inhibited the growth and final mass of the attached-growth biofilm in MB-SBBRs.

  9. Effects of carbon sources on the enrichment of halophilic polyhydroxyalkanoate-storing mixed microbial culture in an aerobic dynamic feeding process

    Science.gov (United States)

    Cui, You-Wei; Zhang, Hong-Yu; Lu, Peng-Fei; Peng, Yong-Zhen

    2016-08-01

    Microbial polyhydroxyalkanoate (PHA) production serves as a substitute for petroleum-based plastics. Enriching mixed microbial cultures (MMCs) with the capacity to store PHA is a key precursor for low-cost PHA production. This study investigated the impact of carbon types on enrichment outcomes. Three MMCs were separately fed by acetate sodium, glucose, and starch as an enriching carbon source, and were exposed to long-term aerobic dynamic feeding (ADF) periods. The PHA production capacity, kinetics and stoichiometry of the enrichments, the PHA composition, and the microbial diversity and community composition were explored to determine carbon and enrichment correlations. After 350-cycle enriching periods under feast-famine (F-F) regimes, the MMCs enriched by acetate sodium and glucose contained a maximum PHA content of 64.7% and 60.5% cell dry weight (CDW). The starch-enriched MMC only had 27.3% CDW of PHA. High-throughput sequencing revealed that non-PHA bacteria survived alongside PHA storing bacteria, even under severe F-F selective pressure. Genus of Pseudomonas and Stappia were the possible PHA accumulating bacteria in acetate-enriched MMC. Genus of Oceanicella, Piscicoccus and Vibrio were found as PHA accumulating bacteria in glucose-enriched MMC. Vibrio genus was the only PHA accumulating bacteria in starch-enriched MMC. The community diversity and composition were regulated by the substrate types.

  10. Isotope Fractionation of Toluene: A Perspective to Characterise Microbial In Situ Degradation

    Directory of Open Access Journals (Sweden)

    H.H. Richnow

    2002-01-01

    Full Text Available A concept to assess in situ biodegradation of organic contaminants in aquifers is presented. The alteration of the carbon isotope composition of contaminants along the groundwater flow path indicates microbial degradation processes and can be used as an indicator for in situ biodegradation. The Rayleigh equation was applied to calculate the percentage of the in situ biodegradation (B[%] using the change in the isotopic composition of contaminants (Rt/R0 along the ground water flow path and a kinetic carbon isotope fractionation factor (αC derived from defined biodegradation experiments in the laboratory. When the groundwater hydrology is known and a representative source concentration (C0 for a groundwater flow path can be determined, the extent of in situ biodegradation can be quantified.

  11. Relationship Between Vegetation Restoration and Soil Microbial Characteristics in Degraded Karst Regions: A Case StudyABSTRACT

    Institute of Scientific and Technical Information of China (English)

    WEI Yuan; YU Li-Fei; MANG Jin-Chi; YU Yuan-Chun; D.L.DEANGELIS

    2011-01-01

    The mechanism of vegetation restoration on degraded karst regions has been a research focus of soil science and ecology for the last decade. In an attempt to preferably interpret the soil microbiological characteristic variation associated with vegetation restoration and further to explore the role of soil microbiology in vegetation restoration mechanisin of degraded karst regions, we measured microbial biomass C and basal respiration in soils during vegetation restoration in Zhenfeng County of southwestern Guizhou Province,China. The community level physiological profiles (CLPP) of the soil microbial community to were estimated determine if vegetation changes were accompanied by changes in functioning of soil microbial communities. The results showed that soil microbial biomass C and microbial quotient (microbial biomass C/organic C) tended to increase with vegetation restoration, being in the order arboreal community stage > shrubby community stage > herbaceous community stage > bare land stage. Similar trend was found in the change of basal respiration (BR). The metabolic quotient (thc ratio of basal respiration to microbial biomass, qCO2) decreased with vegetation restoration, and remained at a constantly low level in the arboreal community stage. Analyses of the CLPP data indicated that vegetation restoration tended to result in higher average well color development, substrate richness, and functional diversity.Average utilization of specific substrate guilds was highest in the arboreal community stage. Principle component analysis of the CLPP data further indicated that the arboreal community stage was distinctly different from the other three stages. In conclusion,vegetation restoration improved soil microbial biomass C, respiration, and utilization of carbon sources, and decreased qCO2, thus creating better soil conditions, which in turn could promote the restoration of vegetation on degraded karst regions.

  12. Anoxic carbon degradation in Arctic sediments: Microbial transformations of complex substrates

    Science.gov (United States)

    Arnosti, C.; Finke, N.; Larsen, O.; Ghobrial, S.

    2005-05-01

    Complex substrates are degraded in anoxic sediments by the concerted activities of diverse microbial communities. To explore the effects of substrate complexity on carbon transformations in permanently cold anoxic sediments, four substrates— Spirulina cells, Isochrysis cells, and soluble high molecular weight carbohydrate-rich extracts of these cells (Spir-Ex and Iso-Ex)—were added to sediments collected from Svalbard. The sediments were homogenized, incubated anaerobically in gas-tight bags at 0°C, and enzyme activities, fermentation, and terminal respiration were monitored over a 1134 h time course. All substrate additions yielded a fraction (8%-13%) of carbon that was metabolized to CO 2 over the first 384 h of incubation. The timecourse of VFA (volatile fatty acid) production and consumption, as well as the suite of VFAs produced, was similar for all substrates. After this phase, pathways of carbon degradation diverged, with an additional 43%, 32%, 33%, and 8% of Isochrysis, Iso-Ex, Spirulina, and Spir-Ex carbon respired to CO 2 over the next 750 h of incubation. Somewhat surprisingly, the soluble, carbohydrate-rich extracts did not prove to be more labile substrates than the whole cells from which they were derived. Although Spirulina and Iso-Ex differed in physical and chemical characteristics (solid/soluble, C/N ratio, lipid and carbohydrate content), nearly identical quantities of carbon were respired to CO 2. In contrast, only 15% of Spir-Ex carbon was respired, despite the initial burst of activity that it fueled, its soluble nature, and its relatively high (50%) carbohydrate content. The microbial community in these cold anoxic sediments clearly has the capacity to react rapidly to carbon input; extent and timecourse of remineralization of added carbon is similar to observations made at much higher temperatures in temperate sediments. The extent of carbon remineralization from these specific substrates, however, would not likely have been predicted

  13. Petroleum degradation and associated microbial signatures at the Chapopote asphalt volcano, Southern Gulf of Mexico

    Science.gov (United States)

    Schubotz, Florence; Lipp, Julius S.; Elvert, Marcus; Kasten, Sabine; Mollar, Xavier Prieto; Zabel, Matthias; Bohrmann, Gerhard; Hinrichs, Kai-Uwe

    2011-08-01

    At the Chapopote Knoll in the Southern Gulf of Mexico, deposits of asphalt provide the substrate for a prolific cold seep ecosystem extensively colonized by chemosynthetic communities. This study investigates microbial life and associated biological processes within the asphalts and surrounding oil-impregnated sediments by analysis of intact polar membrane lipids (IPLs), petroleum hydrocarbons and stable carbon isotopic compositions (δ 13C) of hydrocarbon gases. Asphalt samples are lightly to heavily biodegraded suggesting that petroleum-derived hydrocarbons serve as substrates for the chemosynthetic communities. Accordingly, detection of bacterial diester and diether phospholipids in asphalt samples containing finely dispersed gas hydrate suggests the presence of hydrocarbon-degrading bacteria. Biological methanogenesis contributes a substantial fraction to the methane captured as hydrate in the shallow asphalt deposits evidenced by significant depletion in 13C relative to background thermogenic methane. In sediments, petroleum migrating from the subsurface stimulates both methanogenesis and methanotrophy at a sulfate-methane transition zone 6-7 m below the seafloor. In this zone, microbial IPLs are dominated by archaeal phosphohydroxyarchaeols and archaeal diglycosidic diethers and tetraethers. Bacterial IPLs dominate surface sediments that are impregnated by severely biodegraded oil. In the sulfate-reduction zone, diagnostic IPLs indicate that sulfate-reducing bacteria (SRB) play an important role in petroleum degradation. A diverse mixture of phosphohydroxyarchaeols and mixed phospho- and diglycosidic archaeal tetraethers in shallow oil-impregnated sediments point to the presence of anaerobic methane-oxidizing ANME-2 and ANME-1 archaea, respectively, or methanogens. Archaeal IPLs increase in relative abundance with increasing sediment depth and decreasing sulfate concentrations, accompanied by a shift of archaeol-based to tetraether-based archaeal IPLs. The

  14. Polychlorinated biphenyl (PCB) anaerobic degradation in marine sediments: microcosm study and role of autochthonous microbial communities.

    Science.gov (United States)

    Matturro, Bruna; Ubaldi, Carla; Grenni, Paola; Caracciolo, Anna Barra; Rossetti, Simona

    2016-07-01

    Polychlorobiphenyl (PCB) biodegradation was followed for 1 year in microcosms containing marine sediments collected from Mar Piccolo (Taranto, Italy) chronically contaminated by this class of hazardous compounds. The microcosms were performed under strictly anaerobic conditions with or without the addition of Dehalococcoides mccartyi, the main microorganism known to degrade PCBs through the anaerobic reductive dechlorination process. Thirty PCB congeners were monitored during the experiments revealing that the biodegradation occurred in all microcosms with a decrease in hepta-, hexa-, and penta-chlorobiphenyls (CBs) and a parallel increase in low chlorinated PCBs (tri-CBs and tetra-CBs). The concentrations of the most representative congeners detected in the original sediment, such as 245-245-CB and 2345-245-CB, and of the mixture 2356-34-CB+234-245-CB, decreased by 32.5, 23.8, and 46.7 %, respectively, after only 70 days of anaerobic incubation without any bioaugmentation treatment. Additionally, the structure and population dynamics of the microbial key players involved in the biodegradative process and of the entire mixed microbial community were accurately defined by Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (CARD-FISH) in both the original sediment and during the operation of the microcosm. The reductive dehalogenase genes of D. mccartyi, specifically involved in PCB dechlorination, were also quantified using real-time PCR (qPCR). Our results demonstrated that the autochthonous microbial community living in the marine sediment, including D. mccartyi (6.32E+06 16S rRNA gene copy numbers g(-1) sediment), was able to efficiently sustain the biodegradation of PCBs when controlled anaerobic conditions were imposed. PMID:26162439

  15. Effects of Different Microbial Inoculants on Aerobic Composting of Corn Stalk%不同微生物菌剂对玉米秸秆好氧堆肥效果的影响

    Institute of Scientific and Technical Information of China (English)

    冯致; 李杰; 张国斌; 李雯琳; 贾豪语; 刘赵帆; 郁继华

    2013-01-01

    This study was committed to screen out the suitable corn stalk single fermentation mi-crobial inoculants on the northwest desert region of non-cultivated land in an aerobic composting test. Three representative microbial inoculants (microbial inoculant 1 is mainly consisted of cellulose fungus and degraded starch bacillus;microbial inoculant 2 is mainly consisted of Bacillus subtilis,Strepto-myces tendae,Streptomyces albogriseolus,Aspergillus niger and Trichoderma reesei;microbial inoculant 3 is mainly consisted of dozens microorganisms and bio-enzyme) were selected to do the com-post experiment on corn stalk,not adding inoculants for the control check. The stacking temperature, moisture content,pH,germination seed index and other factors were surveyed and analyzed during the composting. The results show that adding microbial inoculants can effectively speed up the fermentation. The effects are better than that without addition.The temperatures of adding microbial inoculant 1 and microbial inoculant 3 treatments are relatively higher,which rose to 55 °C after 2 days.High tempera-ture lasted for 27 and 33 days,respectively.In the microbial inoculant 2 treatment,high temperature had short duration.The seed germination index was over 80% after 30 d,when treated by microbial inoculant 1 and microbial inoculant 3,while the CK needed 40 d.The total organic carbon contents of various treatments showed a downward trend,when fermentation was implemented. Treatment of micro-bial inoculant 3 had the fastest speed for organic carbon degradation.The pH values of all treatments were within the scope suitable for matured compost.We can summarize that the effect of microbial in-oculant 3 is the best,microbial inoculant 1 is second and microbial inoculant 2 is worst.%  为了筛选适合西北非耕地荒漠区玉米秸秆单一发酵的微生物菌剂,以不添加菌剂为对照,研究了3种微生物菌剂(菌剂1主要由纤维素菌和降解淀

  16. Microbial community structure in a thermophilic aerobic digester used as a sludge pretreatment process for the mesophilic anaerobic digestion and the enhancement of methane production.

    Science.gov (United States)

    Jang, Hyun Min; Park, Sang Kyu; Ha, Jeong Hyub; Park, Jong Moon

    2013-10-01

    An effective two-stage sewage sludge digestion process, consisting of thermophilic aerobic digestion (TAD) followed by mesophilic anaerobic digestion (MAD), was developed for efficient sludge reduction and methane production. Using TAD as a biological pretreatment, the total volatile suspended solid reduction (VSSR) and methane production rate (MPR) in the MAD reactor were significantly improved. According to denaturing gradient gel electrophoresis (DGGE) analysis, the results indicated that the dominant bacteria species such as Ureibacillus thermophiles and Bacterium thermus in TAD were major routes for enhancing soluble organic matter. TAD pretreatment using a relatively short SRT of 1 day showed highly increased soluble organic products and positively affected an increment of bacteria populations which performed interrelated microbial metabolisms with methanogenic species in the MAD; consequently, a quantitative real-time PCR indicated greatly increased Methanosarcinales (acetate-utilizing methanogens) in the MAD, resulting in enhanced methane production.

  17. Microbial community structure in a thermophilic aerobic digester used as a sludge pretreatment process for the mesophilic anaerobic digestion and the enhancement of methane production.

    Science.gov (United States)

    Jang, Hyun Min; Park, Sang Kyu; Ha, Jeong Hyub; Park, Jong Moon

    2013-10-01

    An effective two-stage sewage sludge digestion process, consisting of thermophilic aerobic digestion (TAD) followed by mesophilic anaerobic digestion (MAD), was developed for efficient sludge reduction and methane production. Using TAD as a biological pretreatment, the total volatile suspended solid reduction (VSSR) and methane production rate (MPR) in the MAD reactor were significantly improved. According to denaturing gradient gel electrophoresis (DGGE) analysis, the results indicated that the dominant bacteria species such as Ureibacillus thermophiles and Bacterium thermus in TAD were major routes for enhancing soluble organic matter. TAD pretreatment using a relatively short SRT of 1 day showed highly increased soluble organic products and positively affected an increment of bacteria populations which performed interrelated microbial metabolisms with methanogenic species in the MAD; consequently, a quantitative real-time PCR indicated greatly increased Methanosarcinales (acetate-utilizing methanogens) in the MAD, resulting in enhanced methane production. PMID:23419990

  18. Identification of chlorinated solvents degradation zones in clay till by high resolution chemical, microbial and compound specific isotope analysis

    DEFF Research Database (Denmark)

    Damgaard, Ida; Bjerg, Poul Løgstrup; Bælum, Jacob;

    2013-01-01

    subsampling of the clay till cores. The study demonstrates that an integrated approach combining chemical analysis, molecular microbial tools and compound specific isotope analysis (CSIA) was required in order to document biotic and abiotic degradations in the clay till system. © 2013 Elsevier B.V....

  19. The Analysis of a Microbial Community in the UV/O3-Anaerobic/Aerobic Integrated Process for Petrochemical Nanofiltration Concentrate (NFC Treatment by 454-Pyrosequencing.

    Directory of Open Access Journals (Sweden)

    Chao Wei

    Full Text Available In this study, high-throughput pyrosequencing was applied on the analysis of the microbial community of activated sludge and biofilm in a lab-scale UV/O3- anaerobic/aerobic (A/O integrated process for the treatment of petrochemical nanofiltration concentrate (NFC wastewater. NFC is a type of saline wastewater with low biodegradability. From the anaerobic activated sludge (Sample A and aerobic biofilm (Sample O, 59,748 and 51,231 valid sequence reads were obtained, respectively. The dominant phylotypes related to the metabolism of organic compounds, polycyclic aromatic hydrocarbon (PAH biodegradation, assimilation of carbon from benzene, and the biodegradation of nitrogenous organic compounds were detected as genus Clostridium, genera Pseudomonas and Stenotrophomonas, class Betaproteobacteria, and genus Hyphomicrobium. Furthermore, the nitrite-oxidising bacteria Nitrospira, nitrite-reducing and sulphate-oxidising bacteria (NR-SRB Thioalkalivibrio were also detected. In the last twenty operational days, the total Chemical Oxygen Demand (COD and Total Organic Carbon (TOC removal efficiencies on average were 64.93% and 62.06%, respectively. The removal efficiencies of ammonia nitrogen and Total Nitrogen (TN on average were 90.51% and 75.11% during the entire treatment process.

  20. The Analysis of a Microbial Community in the UV/O3-Anaerobic/Aerobic Integrated Process for Petrochemical Nanofiltration Concentrate (NFC) Treatment by 454-Pyrosequencing

    Science.gov (United States)

    Wei, Chao; He, Wenjie; Wei, Li; Li, Chunying; Ma, Jun

    2015-01-01

    In this study, high-throughput pyrosequencing was applied on the analysis of the microbial community of activated sludge and biofilm in a lab-scale UV/O3- anaerobic/aerobic (A/O) integrated process for the treatment of petrochemical nanofiltration concentrate (NFC) wastewater. NFC is a type of saline wastewater with low biodegradability. From the anaerobic activated sludge (Sample A) and aerobic biofilm (Sample O), 59,748 and 51,231 valid sequence reads were obtained, respectively. The dominant phylotypes related to the metabolism of organic compounds, polycyclic aromatic hydrocarbon (PAH) biodegradation, assimilation of carbon from benzene, and the biodegradation of nitrogenous organic compounds were detected as genus Clostridium, genera Pseudomonas and Stenotrophomonas, class Betaproteobacteria, and genus Hyphomicrobium. Furthermore, the nitrite-oxidising bacteria Nitrospira, nitrite-reducing and sulphate-oxidising bacteria (NR-SRB) Thioalkalivibrio were also detected. In the last twenty operational days, the total Chemical Oxygen Demand (COD) and Total Organic Carbon (TOC) removal efficiencies on average were 64.93% and 62.06%, respectively. The removal efficiencies of ammonia nitrogen and Total Nitrogen (TN) on average were 90.51% and 75.11% during the entire treatment process. PMID:26461260

  1. Aerobic decolorization and degradation of Acid Orange G (AOG) by suspended growing cells and immobilized cells of a yeast strain Candida tropicalis TL-F1.

    Science.gov (United States)

    Tan, Liang; Li, Hua; Ning, Shuxiang; Hao, Jia

    2014-10-01

    In this study, aerobic decolorization and degradation of azo dye Acid Orange G (AOG) by both suspended growing cells and immobilized cells of a yeast strain Candida tropicalis TL-F1 were studied. The effects of different parameters on decolorization of AOG by both growing suspended and immobilized strain TL-F1 were investigated. Furthermore, a possible decolorization mechanism of AOG was proposed through analyzing metabolic intermediates using UV-vis and high-performance liquid chromatography-mass spectrometry (HPLC-MS) methods. Strain TL-F1 could decolorize AOG in both liquid and solid mediums through degradation. The optimal conditions for decolorization with suspended growing cells of strain TL-F1 were as follows: 6-10 g/L sucrose, 5-7 g/L urea, ≥6 % (v/v) inoculation size, ≥160 rpm, 35-40 °C, and pH 5.0-6.0; and those for immobilized cells, the conditions were as follows: 4-6 g/L glucose, 0.2-0.4 g/L urea, 6-10 g/L (wet cell pellets) inoculation size, ≥160 rpm, 35-40 °C, and pH 5.0-7.0. Results of UV-vis scanning spectra suggested that AOG was decolorized through biodegradation, and the possible pathway was proposed through the results of HPLC-MS analysis and related literature. This is a systematic research on aerobic decolorization and degradation of AOG by both suspended and immobilized cells of a C. tropicalis strain.

  2. Microbial degradation. Mass transfer in the system pollutant - water - sediment; Mikrobieller Abbau. Massentransfer im System Schadstoff - Wasser - Sediment

    Energy Technology Data Exchange (ETDEWEB)

    Tiehm, Andreas [Technologiezentrum Wasser (TZW), Karlsruhe (Germany). Abt. Umweltbiotechnologie und Altlasten; Kranzioch, Irene; Stoll, Claudia

    2011-09-15

    The microbial degradation of pollutants in the aquatic environment essentially is influenced by the prevailing redox conditions and mass exchange processes (bioavailability). Within a new project, the Technologiezentrum Wasser TZW (Karlsruhe, Federal Republic of Germany) deals with the microbial conversion under dynamic conditions such as those expected in the area of the Three Gorges Dam at the Yangtze River. In particular, molecular-biological methods (PCR, polymerase chain reaction and DGGE Denatured gradient gel electrophoresis) are used for a targeted monitoring and further developed. The focus of the investigation initially focuses on the degradation of halogenated substances which are used as main substances for understanding the mass exchange between sediment and water as well as the microbial conversion processes. An enhanced understanding of the process and the compilation of the dynamic sales performance can be defined as a target.

  3. Structural effects of ionic liquids on microalgal growth inhibition and microbial degradation.

    Science.gov (United States)

    Pham, Thi Phuong Thuy; Cho, Chul-Woong; Yun, Yeoung-Sang

    2016-03-01

    In the present study, we investigated structural effects of various ionic liquids (ILs) on microalgal growth inhibition and microbial biodegradability. For this, we tested pyridinium- and pyrrolidinium-based ILs with various alkyl chain lengths and bromide anion, and compared the toxicological effects with log EC50 values of imidazolium-based IL with the same alkyl chains and anion from literature. Comparing determined EC50 values of cationic moieties with the same alkyl chain length, pyridinium-based ILs were found to be slightly more toxic towards the freshwater green alga, Pseudokirchneriella subcapitata, than a series of pyrrolidinium and imidazolium except to 1-octyl-3-methylimidazolium bromide. Concerning the biodegradation study of 12 ILs using the activated sludge microorganisms, the results showed that the pyridinium derivatives except to 1-propyl-3-methylpyridinium cation were degraded. Whereas in case of imidazolium- and pyrrolidinium-based compounds, only n-hexyl and n-octyl substituted cations were fully degraded but no significant biodegradation was observed for the short chains (three and four alkyl chains).

  4. 水解单宁的微生物降解%Microbial Degradation of Hydrolysable Tannins

    Institute of Scientific and Technical Information of China (English)

    李明姝; 姚开; 贾冬英; 何强

    2006-01-01

    单宁为高等植物的次生代谢产物,是相对分子质量为300到3 000的多酚类化合物,主要分为水解单宁和缩合单宁两大类.根据水解单宁结构特性的差异,又将其分为棓单宁和鞣花单宁.自然界中的某些微生物具有忍耐单宁的特性,甚至可以将单宁降解成具有一定生理或药理活性的小分子单宁或其衍生物.由于缩合单宁的分子结构复杂,对其微生物降解的研究远不及水解单宁深入.本文综述了近年来关于细菌和真菌降解棓单宁和鞣花单宁的研究情况,阐述了其降解机理,提出了微生物降解单宁需要解决的问题,可为单宁生物降解的进一步研究提供参考.%Tannins are water-soluble polyphenolic secondary metabolites of higher plants with the molar mass from 300 to 3 000 . Hydrolysable and condensed tannins are the two major classes of tannins. There are two groups of hydrolysable tannins: gallotannins and ellagitannins on the basis of structural characteristics. In nature, some microbes are resistant to tannins, even capable of degrading tannins into low-molar-mass tannins and lots of derivatives which have marked biological and pharmacological activities. Gallotannins can be degraded more easily than ellagitannins which have complicated structures with the further coupling C-C bond. However, some bacteria and fungi from the ellagitannin-rich soil, leaves and tannery liquors can hydrolyze ellagitannins. Because of the complicated structures of the further coupling C-C bonds, both complex tannins and condensed tannins are harder to be degraded than gallotannins and ellagitannins in both aerobic and anaerobic environments. This review could provide much references for the further researches on biodegradation of tannins.

  5. In situ and laboratory determined first-order degradation rate constants of specific organic compounds in an aerobic aquifer

    DEFF Research Database (Denmark)

    Nielsen, P.H.; Bjerg, P.L.; Nielsen, P.;

    1996-01-01

    experiments. First-order degradation rate constants for aromatic and phenolic hydrocarbons ranged between 0.01 and 0.9 day(-1). Local variations in first-order degradation rates and variations between rate constants determined by ISM and LBM were generally with in a factor of 5, but no systematic differences...

  6. Metabolism of 2-Chloro-4-Nitroaniline via Novel Aerobic Degradation Pathway by Rhodococcus sp. Strain MB-P1

    OpenAIRE

    Fazlurrahman Khan; Deepika Pal; Surendra Vikram; Swaranjit Singh Cameotra

    2013-01-01

    2-chloro-4-nitroaniline (2-C-4-NA) is used as an intermediate in the manufacture of dyes, pharmaceuticals, corrosion inhibitor and also used in the synthesis of niclosamide, a molluscicide. It is marked as a black-listed substance due to its poor biodegradability. We report biodegradation of 2-C-4-NA and its pathway characterization by Rhodococcus sp. strain MB-P1 under aerobic conditions. The strain MB-P1 utilizes 2-C-4-NA as the sole carbon, nitrogen, and energy source. In the growth medium...

  7. MALDI-TOF MS Imaging evidences spatial differences in the degradation of solid polycaprolactone diol in water under aerobic and denitrifying conditions.

    Science.gov (United States)

    Rivas, Daniel; Ginebreda, Antoni; Pérez, Sandra; Quero, Carmen; Barceló, Damià

    2016-10-01

    Degradation of solid polymers in the aquatic environment encompasses a variety of biotic and abiotic processes giving rise to heterogeneous patterns across the surface of the material, which cannot be investigated using conventional Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS) that only renders an "average" picture of the sample. In that context, MALDI-TOF MS Imaging (MALDI MSI) provides a rapid and efficient tool to study 2D spatial changes occurred in the chemical composition of the polymer surface. Commercial polycaprolactone diol (average molecular weight of 1250Da) was selected as test material because it had been previously known to be amenable to biological degradation. The test oligomer probe was incubated under aerobic and denitrifying conditions using synthetic water and denitrifying mixed liquor obtained from a wastewater treatment plant respectively. After ca. seven days of exposure the mass spectra obtained by MALDI MSI showed the occurrence of chemical modifications in the sample surface. Observed heterogeneity across the probe's surface indicated significant degradation and suggested the contribution of biotic processes. The results were investigated using different image processing tools. Major changes on the oligomer surface were observed when exposed to denitrifying conditions. PMID:27213667

  8. Influence of reductive diet and physical aerobic training on binding and degradation of 125J-insulin by erythrocyte receptors in children with simple obesity

    International Nuclear Information System (INIS)

    Insuline resistance, expressed by lower insuline binding by receptors, is related to the obesity. Improvement of the binding was observed together with reduction of body weight and in result of physical exercise. In the work was investigated an influence of complex result of reductive diet at the level of 1300-1500 kcal and systematic half-an-hour aerobic exercise on binding and degradation of 125J-insulin by erythrocyte receptors in children with simple obesity. The rest binding of insulin by erythrocyte receptors in obese children was compared with the result observed in the children having normal body weight. Results of these researches confirm that systematic physical exercise connected with reductive diet improves the indexes of lipid balance, increases efficiency of the organism, estimated by maximal oxygen absorption, decreases body weight and improves binding of 125J-insulin to erythrocyte receptors. (authors)

  9. Process of rice straw degradation and dynamic trend of pH by the microbial community MC1

    Institute of Scientific and Technical Information of China (English)

    LIU Jian-bin; WANG Wei-dong; YANG Hong-yan; WANG Xiao-fen; GAO Li-juan; CUI Zong-jun

    2006-01-01

    The process of the rice straw degradation in the fermentor with aeration at 290 ml/h was studied. The results of dissolved oxygen (DO) indicated that the optimum DO during cellulose degradation by microbial community MC1 ranged from 0.01 to 0.12mg/L. The change model of pH values was as follows: irrespective of the initial pH of the medium, pH values decreased rapidly to approximate 6.0 after being inoculated within 48 h when cellulose was strongly degraded, and then increased slowly to 8.0-9.0 until cellulose was degraded completely. During the degradation process, 15 kinds of organic compounds were checked out by GC-MS.Most of them were organic acids. Quantity analysis was carried out, and the maximum content compound was ethyl acetate which reached 13.56 g/L on the day 4. The cellulose degradation quantity and ratio analyses showed that less quantity (under batch fermentation conditions) and longer interval (under semi-fermentation conditions) of rice straw added to fermentation system were contributed to matching the change model of pH, and increasing the quantity and ratio of rice straw degradation during cellulose degrading process. The highest degradation ratio was observed under the condition of rice straw added one time every five days (under semi-fermentation conditions).

  10. Triclosan affects the microbial community in simulated sewage-drain-field soil and slows down xenobiotic degradation

    Energy Technology Data Exchange (ETDEWEB)

    Svenningsen, Hanne [Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Oster Voldgade 10, DK-1350 Copenhagen K (Denmark); Department of Biology, University of Copenhagen, Solvgade 83H, DK-1307 Copenhagen K (Denmark); Henriksen, Trine [Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Oster Voldgade 10, DK-1350 Copenhagen K (Denmark); Prieme, Anders [Department of Biology, University of Copenhagen, Solvgade 83H, DK-1307 Copenhagen K (Denmark); Johnsen, Anders R., E-mail: arj@geus.dk [Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Oster Voldgade 10, DK-1350 Copenhagen K (Denmark)

    2011-06-15

    Effects of the common antibacterial agent triclosan on microbial communities and degradation of domestic xenobiotics were studied in simulated sewage-drain-field soil. Cultivable microbial populations decreased 22-fold in the presence of 4 mg kg{sup -1} of triclosan, and triclosan-resistant Pseudomonas strains were strongly enriched. Exposure to triclosan also changed the general metabolic profile (Ecoplate substrate profiling) and the general profile (T-RFLP) of the microbial community. Triclosan degradation was slow at all concentrations tested (0.33-81 mg kg{sup -1}) during 50-days of incubation. Mineralization experiments ({sup 14}C-tracers) and chemical analyses (LC-MS/MS) showed that the persistence of a linear alkylbenzene sulfonate (LAS) and a common analgesic (ibuprofen) increased with increasing triclosan concentrations (0.16-100 mg kg{sup -1}). The largest effect was seen for LAS mineralization which was severely reduced by 0.16 mg kg{sup -1} of triclosan. Our findings indicate that environmentally realistic concentrations of triclosan may affect the efficiency of biodegradation in percolation systems. - Highlights: > Triclosan may enter the soil environment through sewage. > Triclosan impacts the microbial community in sewage-drain-field soil. > Triclosan-resistant pseudomonads are strongly enriched. > Degradation of co-occurring LAS and ibuprofen is reduced. - Environmentally realistic triclosan concentrations in percolation systems may reduce the biodegradation of other xenobiotics and select for triclosan-resistant bacteria.

  11. Responses of butachlor degradation and microbial properties in a riparian soil to the cultivation of three different plants.

    Science.gov (United States)

    Yang, Changming; Wang, Mengmeng; Chen, Haiyan; Li, Jianhua

    2011-01-01

    A pot experiment was conducted to investigate the biodegradation dynamics and related microbial ecophysiological responses to butachlor addition in a riparian soil planted with different plants such as Phragmites australis, Zizania aquatica, and Acorus calamus. The results showed that there were significant differences in microbial degradation dynamics of butachlor in the rhizosphere soils among the three riparian plants. A. calamus displays a significantly higher degradation efficiency of butachlor in the rhizosphere soils, as compared with Z. aquatica and P. australis. Half-life time of butachlor degradation in the rhizospheric soils of P. australis, Z. aquatica, and A. calamus were 7.5, 9.8 and 5.4 days, respectively. Residual butachlor concentration in A. calamus rhizosphere soil was 35.2% and 21.7% lower than that in Z. aquatica and P. australis rhizosphere soils, respectively, indicating that A. calamus showed a greater improvement effect on biodegradation of butachlor in rhizosphere soils than the other two riparian plant. In general, microbial biomass and biochemical activities in rhizosphere soils were depressed by butachlor addition, despite the riparian plant types. However, rhizospheric soil microbial ecophysiological responses to butachlor addition significantly (P butachlor addition and can be used as a suitable riparian plant for detoxifying and remediating butachlor contamination from agricultural nonpoint pollution.

  12. Effect of fly ash amendment on metolachlor and atrazine degradation and microbial activity in two soils.

    Science.gov (United States)

    Ghosh, Rakesh Kumar; Singh, Neera; Singh, Shashi Bala

    2016-08-01

    The study reports the effect of Inderprastha (IP) and Badarpur (BP) fly ashes on degradation of metolachlor and atrazine in Inceptisol and Alfisol soils. Metolachlor dissipated at faster rate in Alfisol (t1/2 8.2-8.6 days) than in Inceptisol (t1/2 13.2-14.3 days). The fly ashes enhanced the persistence of metolachlor in both the soils; however, the extent of effect was more in Inceptisol (t1/2 16.6-33.8 days) than Alfisol (t1/2 8.4-12 days) and effect increased with fly ash dose. 2-Ethyl-6-methylacetanilide was detected as the only metabolite of metolachlor. Atrazine was more persistent in flooded soils (t1/2 10.8-20.3 days) than nonflooded soils (t1/2 3.7-12.6 days) and fly ash increased its persistence, but effect was more pronounced in the flooded Inceptisol (t1/2 23.7-31 days) and nonflooded Alfisol (t1/2 6.3-10.1 days). Increased herbicide sorption in the fly ash-amended soils might have contributed to the increased pesticide persistence. The IP fly ash inhibited microbial biomass carbon at 5 % amendment levels in both the soils, while BP fly ash slightly increased microbial biomass carbon (MBC) content. Dehydrogenase activity was inhibited by both fly ashes in both the soils with maximum inhibition observed in the IP fly ash-amended Alfisol. No significant effect of fly ash amendment was observed on the fluorescein diacetate activity. PMID:27456695

  13. Microbial degradation of 2,4-dichlorophenoxyacetic acid on the Greenland ice sheet.

    Science.gov (United States)

    Stibal, Marek; Bælum, Jacob; Holben, William E; Sørensen, Sebastian R; Jensen, Anders; Jacobsen, Carsten S

    2012-08-01

    The Greenland ice sheet (GrIS) receives organic carbon (OC) of anthropogenic origin, including pesticides, from the atmosphere and/or local sources, and the fate of these compounds in the ice is currently unknown. The ability of supraglacial heterotrophic microbes to mineralize different types of OC is likely a significant factor determining the fate of anthropogenic OC on the ice sheet. Here we determine the potential of the microbial community from the surface of the GrIS to mineralize the widely used herbicide 2,4-dichlorophenoxyacetic acid (2,4-D). Surface ice cores were collected and incubated for up to 529 days in microcosms simulating in situ conditions. Mineralization of side chain- and ring-labeled [(14)C]2,4-D was measured in the samples, and quantitative PCR targeting the tfdA genes in total DNA extracted from the ice after the experiment was performed. We show that the supraglacial microbial community on the GrIS contains microbes that are capable of degrading 2,4-D and that they are likely present in very low numbers. They can mineralize 2,4-D at a rate of up to 1 nmol per m(2) per day, equivalent to ∼26 ng C m(-2) day(-1). Thus, the GrIS should not be considered a mere reservoir of all atmospheric contaminants, as it is likely that some deposited compounds will be removed from the system via biodegradation processes before their potential release due to the accelerated melting of the ice sheet. PMID:22582066

  14. Fine scale spatial variability of microbial pesticide degradation in soil: scales, controlling factors, and implications

    Directory of Open Access Journals (Sweden)

    Arnaud eDechesne

    2014-12-01

    Full Text Available Pesticide biodegradation is a soil microbial function of critical importance for modern agriculture and its environmental impact. While it was once assumed that this activity was homogeneously distributed at the field scale, mounting evidence indicates that this is rarely the case. Here, we critically examine the literature on spatial variability of pesticide biodegradation in agricultural soil. We discuss the motivations, methods, and main findings of the primary literature. We found significant diversity in the approaches used to describe and quantify spatial heterogeneity, which complicates inter-studies comparisons. However, it is clear that the presence and activity of pesticide degraders is often highly spatially variable with coefficients of variation often exceeding 50% and frequently displays nonrandom spatial patterns. A few controlling factors have tentatively been identified across pesticide classes: they include some soil characteristics (pH and some agricultural management practices (pesticide application, tillage, while other potential controlling factors have more conflicting effects depending on the site or the pesticide. Evidence demonstrating the importance of spatial heterogeneity on the fate of pesticides in soil has been difficult to obtain but modelling and experimental systems that do not include soil’s full complexity reveal that this heterogeneity must be considered to improve prediction of pesticide biodegradation rates or of leaching risks. Overall, studying the spatial heterogeneity of pesticide biodegradation is a relatively new field at the interface of agronomy, microbial ecology, and geosciences and a wealth of novel data is being collected from these different disciplinary perspectives. We make suggestions on possible avenues to take full advantage of these investigations for a better understanding and prediction of the fate of pesticides in soil.

  15. Several genes encoding enzymes with the same activity are necessary for aerobic fungal degradation of cellulose in nature.

    Science.gov (United States)

    Busk, Peter K; Lange, Mette; Pilgaard, Bo; Lange, Lene

    2014-01-01

    The cellulose-degrading fungal enzymes are glycoside hydrolases of the GH families and lytic polysaccharide monooxygenases. The entanglement of glycoside hydrolase families and functions makes it difficult to predict the enzymatic activity of glycoside hydrolases based on their sequence. In the present study we further developed the method Peptide Pattern Recognition to an automatic approach not only to find all genes encoding glycoside hydrolases and lytic polysaccharide monooxygenases in fungal genomes but also to predict the function of the genes. The functional annotation is an important feature as it provides a direct route to predict function from primary sequence. Furthermore, we used Peptide Pattern Recognition to compare the cellulose-degrading enzyme activities encoded by 39 fungal genomes. The results indicated that cellobiohydrolases and AA9 lytic polysaccharide monooxygenases are hallmarks of cellulose-degrading fungi except brown rot fungi. Furthermore, a high number of AA9, endocellulase and β-glucosidase genes were identified, not in what are known to be the strongest, specialized lignocellulose degraders but in saprophytic fungi that can use a wide variety of substrates whereas only few of these genes were found in fungi that have a limited number of natural, lignocellulotic substrates. This correlation suggests that enzymes with different properties are necessary for degradation of cellulose in different complex substrates. Interestingly, clustering of the fungi based on their predicted enzymes indicated that Ascomycota and Basidiomycota use the same enzymatic activities to degrade plant cell walls. PMID:25461894

  16. Several genes encoding enzymes with the same activity are necessary for aerobic fungal degradation of cellulose in nature.

    Directory of Open Access Journals (Sweden)

    Peter K Busk

    Full Text Available The cellulose-degrading fungal enzymes are glycoside hydrolases of the GH families and lytic polysaccharide monooxygenases. The entanglement of glycoside hydrolase families and functions makes it difficult to predict the enzymatic activity of glycoside hydrolases based on their sequence. In the present study we further developed the method Peptide Pattern Recognition to an automatic approach not only to find all genes encoding glycoside hydrolases and lytic polysaccharide monooxygenases in fungal genomes but also to predict the function of the genes. The functional annotation is an important feature as it provides a direct route to predict function from primary sequence. Furthermore, we used Peptide Pattern Recognition to compare the cellulose-degrading enzyme activities encoded by 39 fungal genomes. The results indicated that cellobiohydrolases and AA9 lytic polysaccharide monooxygenases are hallmarks of cellulose-degrading fungi except brown rot fungi. Furthermore, a high number of AA9, endocellulase and β-glucosidase genes were identified, not in what are known to be the strongest, specialized lignocellulose degraders but in saprophytic fungi that can use a wide variety of substrates whereas only few of these genes were found in fungi that have a limited number of natural, lignocellulotic substrates. This correlation suggests that enzymes with different properties are necessary for degradation of cellulose in different complex substrates. Interestingly, clustering of the fungi based on their predicted enzymes indicated that Ascomycota and Basidiomycota use the same enzymatic activities to degrade plant cell walls.

  17. Responses of butachlor degradation and microbial properties in a riparian soil to the cultivation of three different plants

    Institute of Scientific and Technical Information of China (English)

    Changming Yang; Mengmeng Wang; Haiyan Chen; Jianhua Li

    2011-01-01

    A pot experiment was conducted to investigate the biodegradation dynamics and related microbial ecophysiological responses to butachlor addition in a riparian soil planted with different plants such as Phragmites australis,Zizaaia aquatica,and Acorus calamus.The results showed that there were significant differences in microbial degradation dynamics of butachlor in the rhizosphere soils among the three riparian plants.A.calamus displays a significantly higher degradation efficiency of butachlor in the rhizosphere soils,as compared with Z aquatica and P.australis.Half-life time of butachlor degradation in the rhizospheric soils of P.australis,Z.aquatica,and A.calamus were 7.5,9.8 and 5.4 days,respectively.Residual butachlor concentration in A.calamus rhizosphere soil was 35.2% and 21.7% lower than that in Z.aquatica and P.australis rhizosphere soils,respectively,indicating that A.calamus showed a greater improvement effect on biodegradation of butachlor in rhizosphere soils than the other two riparian plant.In general,microbial biomass and biochemical activities in rhizosphere soils were depressed by butachlor addition,despite the riparian plant types.However,rhizospheric soil microbial ecophysiological responses to butachlor addition significantly (P < 0.05) differed between riparian plant species.Compared to Z.aquatica and P.australis,A.calamus showed significantly larger microbial number,higher enzyme activities and soil respiration rates in the rhizosphere soils.The results indicated that A.calamus have a better alleviative effect on inhibition of microbial growth due to butachlor addition and can be used as a suitable riparian plant for detoxifying and remediating butaehlor contamination from agricultural nonpoint pollution.

  18. Clay minerals and metal oxides strongly influence the structure of alkane-degrading microbial communities during soil maturation.

    Science.gov (United States)

    Steinbach, Annelie; Schulz, Stefanie; Giebler, Julia; Schulz, Stephan; Pronk, Geertje J; Kögel-Knabner, Ingrid; Harms, Hauke; Wick, Lukas Y; Schloter, Michael

    2015-07-01

    Clay minerals, charcoal and metal oxides are essential parts of the soil matrix and strongly influence the formation of biogeochemical interfaces in soil. We investigated the role of these parental materials for the development of functional microbial guilds using the example of alkane-degrading bacteria harbouring the alkane monooxygenase gene (alkB) in artificial mixtures composed of different minerals and charcoal, sterile manure and a microbial inoculum extracted from an agricultural soil. We followed changes in abundance and community structure of alkane-degrading microbial communities after 3 and 12 months of soil maturation and in response to a subsequent 2-week plant litter addition. During maturation we observed an overall increasing divergence in community composition. The impact of metal oxides on alkane-degrading community structure increased during soil maturation, whereas the charcoal impact decreased from 3 to 12 months. Among the clay minerals illite influenced the community structure of alkB-harbouring bacteria significantly, but not montmorillonite. The litter application induced strong community shifts in soils, maturated for 12 months, towards functional guilds typical for younger maturation stages pointing to a resilience of the alkane-degradation function potentially fostered by an extant 'seed bank'.

  19. Thick juice degradation: study of the microbial population dynamics and control of the causative flora during storage

    OpenAIRE

    Justé, Annelies

    2008-01-01

    Table of contents Abstract i Samenvatting iii Publications v List of abbreviations vii 1. CURRENT KNOWLEDGE ABOUT SUGAR THICK JUICE PRODUCTION 1 1.1 SUGAR PRODUCTION FROM SUGAR BEETS 2 1.2 THICK JUICE DEGRADATION DURING STORAGE 4 1.3 MICROBIAL COMMUNITY ANALYSIS TECHNIQUES IN FOOD AND FOOD- ASSOCIATED MATRICES 9 1.3.1 Choice of target genes 10 1.3.1.1. Ubiquitously conserved genes 10 1.3.1.2. Functional genes 11 1.3.2 Microbial community analysis tech...

  20. Rapid degradation of sulphamethoxazole and the further transformation of 3-amino-5-methylisoxazole in a microbial fuel cell.

    Science.gov (United States)

    Wang, Lu; Liu, Yulei; Ma, Jun; Zhao, Feng

    2016-01-01

    Sulphamethoxazole (SMX) is extensively used in humans and livestock, but its appearance in natural water raises environmental concerns. This study demonstrated that SMX and its degradation product, 3-amino-5-methylisoxazole (3A5MI), could be effectively degraded in microbial fuel cell (MFC) reactors. Approximately 85% of 20 ppm SMX was degraded within 12 h, and this was a more rapid biodegradation rate than has been previously shown in the literature. In addition, 3A5MI, a toxic chemical that forms in the SMX degradation process, can be further mineralized. The degradation products of SMX were detected by mass spectrometry, and three speculated by-products were confirmed with chemical standards. It was observed that nitrogen atoms of SMX were progressively eliminated during the degradation process, which may relate with the degradation of SMX and 3A5MI. An antibacterial activity test showed that the biotoxicity of SMX towards Shewanella oneidensis MR-1 and Escherichia coli DH5α was greatly reduced after MFC treatment. Moreover, the ATP level of the MFC microbe was nearly threefold higher than that in open-circuit controls, which may be related to the rapid degradation of SMX in MFCs. This study can facilitate further investigations about the biodegradation of SMX.

  1. Prolonged aerobic degradation of shredded and pre-composted municipal solid waste: report from a 21-year study of leachate quality characteristics.

    Science.gov (United States)

    Grisey, Elise; Aleya, Lotfi

    2016-01-01

    The objective of this study was to assess the degree of long-term waste maturation at a closed landfill (Etueffont, France) over a period of 21 years (1989-2010) through analysis of the physicochemical characteristics of leachates as well as biochemical oxygen demand (BOD), chemical oxygen demand (COD), and metal content in waste. The results show that the leachates, generated in two different sections (older and newer) of the landfill, have low organic, mineral, and metallic loads, as the wastes were mainly of household origin from a rural area where sorting and composting were required. Based on pH and BOD/COD assessments, leachate monitoring in the landfill's newer section showed a rapid decrease in the pollution load over time and an early onset of methanogenic conditions. The closing of the older of the two sections contributed to a significant decline for the majority of parameters, attributable to degradation and leaching. A gradual decreasing trend was observed after waste placement had ceased in the older section, indicating that degradation continued and the waste mass had not yet fully stabilized. At the end of monitoring, leachates from the two landfill linings contained typical old leachates in the maturation period, with a pH ≥ 7 and a low BOD/COD ratio indicating a low level of waste biodegradability. Age actually contributes to a gradual removal of organic, inorganic, and metallic wastes, but it is not the only driving factor behind advanced degradation. The lack of compaction and cover immediately after deposit extended the aerobic degradation phase, significantly reducing the amount of organic matter. In addition, waste shredding improved water infiltration into the waste mass, hastening removal of polluting components through percolation.

  2. Several genes encoding enzymes with the same activity are necessary for aerobic fungal degradation of cellulose in nature

    DEFF Research Database (Denmark)

    Busk, Peter Kamp; Lange, Mette; Pilgaard, Bo;

    2014-01-01

    The cellulose-degrading fungal enzymes are glycoside hydrolases of the GH families and lytic polysaccharide monooxygenases. The entanglement of glycoside hydrolase families and functions makes it difficult to predict the enzymatic activity of glycoside hydrolases based on their sequence...... only few of these genes were found in fungi that have a limited number of natural, lignocellulotic substrates. This correlation suggests that enzymes with different properties are necessary for degradation of cellulose in different complex substrates. Interestingly, clustering of the fungi based...... feature as it provides a direct route to predict function from primary sequence. Furthermore, we used Peptide Pattern Recognition to compare the cellulose-degrading enzyme activities encoded by 39 fungal genomes. The results indicated that cellobiohydrolases and AA9 lytic polysaccharide monooxygenases...

  3. Formulation of economical microbial feed using degraded chicken feathers by a novel Streptomyces sp: mitigation of environmental pollution

    Directory of Open Access Journals (Sweden)

    Jayapradha Ramakrishnan

    2011-09-01

    Full Text Available A new Streptomyces sp. IF 5 was isolated from the feather dumped soil and found to have a tremendous keratinase activity. The strain enabled the degradation of the chicken feathers very effectively in 60 h. The 16S rRNA sequence of 1474 bp long was submitted to the National centre for Biotechnological information. The keratinolytic activity in the culture medium was 1181 U/ml. The release and analyses of sulphydryl groups in the culture medium evident the degradation activity by the Streptomyces sp. IF 5. The idea of the present study was to use the degraded chicken feathers as the substrate for the growth and cultivation of microorganisms. We have designed a very economical culture medium that includes the usage of some basal salts alone and degraded chicken feathers (10 g/l. The results of the specific growth rate of the tested microbes confirm the usage of the new designed medium for microbial culturing.

  4. Formulation of economical microbial feed using degraded chicken feathers by a novel Streptomyces sp: mitigation of environmental pollution

    Science.gov (United States)

    Ramakrishnan, Jayapradha; Balakrishnan, Hariram; Raja, Selvaraj Thirupathi Kumara; Sundararamakrishnan, Natarajan; Renganathan, Sadagoban; Radha, Venkatesh Nagarajan

    2011-01-01

    A new Streptomyces sp. IF 5 was isolated from the feather dumped soil and found to have a tremendous keratinase activity. The strain enabled the degradation of the chicken feathers very effectively in 60 h. The 16S rRNA sequence of 1474 bp long was submitted to the National centre for Biotechnological information. The keratinolytic activity in the culture medium was 1181 U/ml. The release and analyses of sulphydryl groups in the culture medium evident the degradation activity by the Streptomyces sp. IF 5. The idea of the present study was to use the degraded chicken feathers as the substrate for the growth and cultivation of microorganisms. We have designed a very economical culture medium that includes the usage of some basal salts alone and degraded chicken feathers (10 g/l). The results of the specific growth rate of the tested microbes confirm the usage of the new designed medium for microbial culturing. PMID:24031698

  5. Microbial utilization of lignin: available biotechnologies for its degradation and valorization.

    Science.gov (United States)

    Palazzolo, Martín A; Kurina-Sanz, Marcela

    2016-10-01

    Lignocellulosic biomasses, either from non-edible plants or from agricultural residues, stock biomacromolecules that can be processed to produce both energy and bioproducts. Therefore, they become major candidates to replace petroleum as the main source of energy. However, to shift the fossil-based economy to a bio-based one, it is imperative to develop robust biotechnologies to efficiently convert lignocellulosic streams in power and platform chemicals. Although most of the biomass processing facilities use celluloses and hemicelluloses to produce bioethanol and paper, there is no consolidated bioprocess to produce valuable compounds out of lignin at industrial scale available currently. Usually, lignin is burned to provide heat or it remains as a by-product in different streams, thus arising environmental concerns. In this way, the biorefinery concept is not extended to completion. Due to Nature offers an arsenal of biotechnological tools through microorganisms to accomplish lignin valorization or degradation, an increasing number of projects dealing with these tasks have been described recently. In this review, outstanding reports over the last 6 years are described, comprising the microbial utilization of lignin to produce a variety of valuable compounds as well as to diminish its ecological impact. Furthermore, perspectives on these topics are given. PMID:27565783

  6. Microbial utilization of lignin: available biotechnologies for its degradation and valorization.

    Science.gov (United States)

    Palazzolo, Martín A; Kurina-Sanz, Marcela

    2016-10-01

    Lignocellulosic biomasses, either from non-edible plants or from agricultural residues, stock biomacromolecules that can be processed to produce both energy and bioproducts. Therefore, they become major candidates to replace petroleum as the main source of energy. However, to shift the fossil-based economy to a bio-based one, it is imperative to develop robust biotechnologies to efficiently convert lignocellulosic streams in power and platform chemicals. Although most of the biomass processing facilities use celluloses and hemicelluloses to produce bioethanol and paper, there is no consolidated bioprocess to produce valuable compounds out of lignin at industrial scale available currently. Usually, lignin is burned to provide heat or it remains as a by-product in different streams, thus arising environmental concerns. In this way, the biorefinery concept is not extended to completion. Due to Nature offers an arsenal of biotechnological tools through microorganisms to accomplish lignin valorization or degradation, an increasing number of projects dealing with these tasks have been described recently. In this review, outstanding reports over the last 6 years are described, comprising the microbial utilization of lignin to produce a variety of valuable compounds as well as to diminish its ecological impact. Furthermore, perspectives on these topics are given.

  7. Partial acetylation in situ of cellulosic fabric and its resistance to microbial and actinic degradation

    Directory of Open Access Journals (Sweden)

    K. L. Maheshwari

    1963-04-01

    Full Text Available Partial acetylation in situ of cotton fabrics can be achieved satisfactorily when it is carried out using 0.03 percent perchloricacid as the catalyst at a temperature not exceeding 30DegreeC. Increase in concentration of perchloric acid or temperature adversely affects the tensile strength of the fabrics. The acetylation of fabrics confers resistance to leaching. Scouring of the fabric prior to acetylation does not materially influence the extent of substitution of hydroxyl groups by acetyl ones. The acetylating mixture can be repeatedly used but fresh addition of the catalyst is necessary. With increase in the period of acetylation or in the quantity of catalyst, there is a progressive increase in acetic acid yield but the tensile strength of the fabric shows a corresponding decrease. Partial acetylation affords protection against microbial attack when the acetyl content of the acetylated fabrics is 14-15 percent. The treatment does not however afford protection against degradation by artificial light, or sunlight or weathering.

  8. Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant

    Directory of Open Access Journals (Sweden)

    Brandon eBrooks

    2015-07-01

    Full Text Available While there has been growing interest in the gut microbiome in recent years, it remains unclear whether closely related species and strains have similar or distinct functional roles and if organisms capable of both aerobic and anaerobic growth do so simultaneously. To investigate these questions, we implemented a high-throughput mass spectrometry-based proteomics approach to identify proteins in fecal samples collected on days of life 13-21 from an infant born at 28 weeks gestation. No prior studies have coupled strain-resolved community metagenomics to proteomics for such a purpose. Sequences were manually curated to resolve the genomes of two strains of Citrobacter that were present during the later stage of colonization. Proteome extracts from fecal samples were processed via a nano-2D-LC-MS/MS and peptides were identified based on information predicted from the genome sequences for the dominant organisms, Serratia and the two Citrobacter strains. These organisms are facultative anaerobes, and proteomic information indicates the utilization of both aerobic and anaerobic metabolisms throughout the time series. This may indicate growth in distinct niches within the gastrointestinal tract. We uncovered differences in the physiology of coexisting Citrobacter strains, including differences in motility and chemotaxis functions. Additionally, for both Citrobacter strains we resolved a community-essential role in vitamin metabolism and a predominant role in propionate production. Finally, in this case study we detected differences between genome abundance and activity levels for the dominant populations. This underlines the value in layering proteomic information over genetic potential.

  9. Development of a predictive model for the growth kinetics of aerobic microbial population on pomegranate marinated chicken breast fillets under isothermal and dynamic temperature conditions.

    Science.gov (United States)

    Lytou, Anastasia; Panagou, Efstathios Z; Nychas, George-John E

    2016-05-01

    The aim of this study was the development of a model to describe the growth kinetics of aerobic microbial population of chicken breast fillets marinated in pomegranate juice under isothermal and dynamic temperature conditions. Moreover, the effect of pomegranate juice on the extension of the shelf life of the product was investigated. Samples (10 g) of chicken breast fillets were immersed in marinades containing pomegranate juice for 3 h at 4 °C following storage under aerobic conditions at 4, 10, and 15 °C for 10 days. Total Viable Counts (TVC), Pseudomonas spp and lactic acid bacteria (LAB) were enumerated, in parallel with sensory assessment (odor and overall appearance) of marinated and non-marinated samples. The Baranyi model was fitted to the growth data of TVC to calculate the maximum specific growth rate (μmax) that was further modeled as a function of temperature using a square root-type model. The validation of the model was conducted under dynamic temperature conditions based on two fluctuating temperature scenarios with periodic changes from 6 to 13 °C. The shelf life was determined both mathematically and with sensory assessment and its temperature dependence was modeled by an Arrhenius type equation. Results showed that the μmax of TVC of marinated samples was significantly lower compared to control samples regardless temperature, while under dynamic temperature conditions the model satisfactorily predicted the growth of TVC in both control and marinated samples. The shelf-life of marinated samples was significantly extended compared to the control (5 days extension at 4 °C). The calculated activation energies (Ea), 82 and 52 kJ/mol for control and marinated samples, respectively, indicated higher temperature dependence of the shelf life of control samples compared to marinated ones. The present results indicated that pomegranate juice could be used as an alternative ingredient in marinades to prolong the shelf life of chicken. PMID:26742613

  10. Microbial Biomass and Activity in Geomorphic Features in Forested and Urban Restored and Degraded Streams

    Science.gov (United States)

    Geomorphic spatial heterogeneity affects sediment denitrification, an anaerobic microbial process that results in the loss of nitrogen (N), and other anaerobic microbial processes such as methanogenesis in urban streams. We measured sediment denitrification potential (DEA), metha...

  11. Solid-, solution-, and gas-state NMR monitoring of ¹³C-cellulose degradation in an anaerobic microbial ecosystem.

    Science.gov (United States)

    Yamazawa, Akira; Iikura, Tomohiro; Shino, Amiu; Date, Yasuhiro; Kikuchi, Jun

    2013-07-29

    Anaerobic digestion of biomacromolecules in various microbial ecosystems is influenced by the variations in types, qualities, and quantities of chemical components. Nuclear magnetic resonance (NMR) spectroscopy is a powerful tool for characterizing the degradation of solids to gases in anaerobic digestion processes. Here we describe a characterization strategy using NMR spectroscopy for targeting the input solid insoluble biomass, catabolized soluble metabolites, and produced gases. ¹³C-labeled cellulose produced by Gluconacetobacter xylinus was added as a substrate to stirred tank reactors and gradually degraded for 120 h. The time-course variations in structural heterogeneity of cellulose catabolism were determined using solid-state NMR, and soluble metabolites produced by cellulose degradation were monitored using solution-state NMR. In particular, cooperative changes between the solid NMR signal and ¹³C-¹³C/¹³C-¹²C isotopomers in the microbial degradation of ¹³C-cellulose were revealed by a correlation heat map. The triple phase NMR measurements demonstrated that cellulose was anaerobically degraded, fermented, and converted to methane gas from organic acids such as acetic acid and butyric acid.

  12. Solid-, Solution-, and Gas-state NMR Monitoring of 13C-Cellulose Degradation in an Anaerobic Microbial Ecosystem

    Directory of Open Access Journals (Sweden)

    Yasuhiro Date

    2013-07-01

    Full Text Available Anaerobic digestion of biomacromolecules in various microbial ecosystems is influenced by the variations in types, qualities, and quantities of chemical components. Nuclear magnetic resonance (NMR spectroscopy is a powerful tool for characterizing the degradation of solids to gases in anaerobic digestion processes. Here we describe a characterization strategy using NMR spectroscopy for targeting the input solid insoluble biomass, catabolized soluble metabolites, and produced gases. 13C-labeled cellulose produced by Gluconacetobacter xylinus was added as a substrate to stirred tank reactors and gradually degraded for 120 h. The time-course variations in structural heterogeneity of cellulose catabolism were determined using solid-state NMR, and soluble metabolites produced by cellulose degradation were monitored using solution-state NMR. In particular, cooperative changes between the solid NMR signal and 13C-13C/13C-12C isotopomers in the microbial degradation of 13C-cellulose were revealed by a correlation heat map. The triple phase NMR measurements demonstrated that cellulose was anaerobically degraded, fermented, and converted to methane gas from organic acids such as acetic acid and butyric acid.

  13. Degradation pathway, toxicity and kinetics of 2,4,6-trichlorophenol with different co-substrate by aerobic granules in SBR.

    Science.gov (United States)

    Khan, Mohammad Zain; Mondal, Pijush Kanti; Sabir, Suhail; Tare, Vinod

    2011-07-01

    The present study deals with cultivation of 2,4,6-trichlorophenol (TCP) degrading aerobic granules in two SBR systems based on glucose and acetate as co-substrate. Biodegradation of TCP containing wastewater starting from 10 to 360 mg L(-1) with more than 90% efficiency was achieved. Sludge volume index decreases as the operation proceeds to stabilize at 35 and 30 mL g(-1) while MLVSS increases from 4 to 6.5 and 6.2 g L(-1) for R1 (with glucose as co-substrate) and R2 (with sodium acetate as co-substrate), respectively. FTIR, GC and GC/MS spectral studies shows that the biodegradation occurred via chlorocatechol pathway and the cleavage may be at ortho-position. Haldane model for inhibitory substrate was applied to the system and it was observed that glucose fed granules have a high specific degradation rate and efficiency than acetate fed granules. Genotoxicity studies shows that effluent coming from SBRs was non-toxic. PMID:21565491

  14. Cascade degradation of organic matters in brewery wastewater using a continuous stirred microbial electrochemical reactor and analysis of microbial communities

    OpenAIRE

    Haiman Wang; Youpeng Qu; Da Li; Ambuchi, John J.; Weihua He; Xiangtong Zhou; Jia Liu; Yujie Feng

    2016-01-01

    A continuous stirred microbial electrochemical reactor (CSMER), comprising of a complete mixing zone (CMZ) and microbial electrochemical zone (MEZ), was used for brewery wastewater treatment. The system realized 75.4 ± 5.7% of TCOD and 64.9 ± 4.9% of TSS when fed with brewery wastewater concomitantly achieving an average maximum power density of 304 ± 31 m W m−2. Cascade utilization of organic matters made the CSMER remove a wider range of substrates compared with a continuous stirred tank re...

  15. [Effects of Oil Pollutants on the Performance of Marine Benthonic Microbial Fuel Cells and Its Acceleration of Degradation].

    Science.gov (United States)

    Meng, Yao; Fu, Yu-bin; Liang, Sheng-kang; Chen, Wei; Liu, Zhao-hui

    2015-08-01

    Degradation of oil pollutants under the sea is slow for its oxygen-free environment which has caused long-term harm to ocean environment. This paper attempts to accelerate the degradation of the sea oil pollutants through electro catalysis by using the principle of marine benthonic microbial fuel cells (BMFCs). The influence of oil pollutants on the battery performance is innovatively explored by comparing the marine benthonic microbial fuel cells ( BMFCs-A) containing oil and oil-free microbial fuel cells (BMFCs-B). The acceleration effect of BMFCs is investigated by the comparison between the oil-degrading rate and the number of heterotrophic bacteria of the BMFCs-A and BMFCs-B on their anodes. The results show that the exchange current densities in the anode of the BMFCs-A and BMFCs-B are 1. 37 x 10(-2) A x m(-2) and 1.50 x 10(-3) A x m(-2) respectively and the maximum output power densities are 105.79 mW x m(-2) and 83.60 mW x m(-2) respectively. The exchange current densities have increased 9 times and the maximum output power density increased 1. 27 times. The anti-polarization ability of BMFCs-A is improved. The heterotrophic bacteria numbers of BMFCs-A and BMFCs-C on their anodes are (66 +/- 3.61) x 10(7) CFU x g(-1) and (7.3 +/- 2.08) x 10(7) CFU x g(-1) respectively and the former total number has increased 8 times, which accelerates the oil-degrading rate. The degrading rate of the oil in the BMFCs-A is 18.7 times higher than that in its natural conditions. The BMFCs can improve its electrochemical performance, meanwhile, the degradation of oil pollutants can also be accelerated. A new model of the marine benthonic microbial fuel cells on its acceleration of oil degradation is proposed in this article.

  16. Investigations on degradation of nitrogen compounds by anaerobic-aerobic treatment of concentrated wastewaters with special regard to nitrogen removal via nitrite

    International Nuclear Information System (INIS)

    The main result is, that the two-stage anaerobic-aerobic treatment of high strength ammonium wastewater is an economical solution, save to operate and with high efficiency. Therefore its very important, to project and optimize the total process. On the one hand the biogas production has to be maximized, on the other hand the energy consumption for aeration and excess sludge treatment and resulting excess sludge has to be minimized. One possibility to realize this, is the nitrogen removal via nitrite. This process has been investigated in half-technical pilot plants. The carbon consumption amounts only to 63% in comparison with dentrification via nitrate. The 37% which are saved could be transformed into biogas during the anaerobic stage. The excess sludge production and the energy consumption in the aerobic stage is correspondingly lower. The essential parameter for regulating the process is the concentration of free ammonia (1-5 mg NH3/l) in the reactor (controlled by means of a continuous NH4- and pH-measurement). The inhibition of the nitrobacter amounts to 80%. - The storage of nitrifying biomass for several months (for industries working in campaigns) is possible without adding nitrogen and with an aeration intensity of e.g. 1 h/d, depending on the actual ammonium increase in the reactor (< 10 mg/l). To avoid inhibition during the reactivation of the sludge, the load has to be adapted to the actual activity (measured by means of an ammonium-degradation-test) and the dentrification has to be started at the same time. (orig.). 27 figs., 42 tabs., 104 refs

  17. Evidence of α-, β- and γ-HCH mixture aerobic degradation by the native actinobacteria Streptomyces sp. M7.

    Science.gov (United States)

    Sineli, P E; Tortella, G; Dávila Costa, J S; Benimeli, C S; Cuozzo, S A

    2016-05-01

    The organochlorine insecticide γ-hexachlorocyclohexane (γ-HCH, lindane) and its non-insecticidal α- and β-isomers continue to pose serious environmental and health concerns, although their use has been restricted or completely banned for decades. In this study we report the first evidence of the growth ability of a Streptomyces strain in a mineral salt medium containing high doses of α- and β-HCH (16.6 mg l(-1)) as a carbon source. Degradation of HCH isomers by Streptomyces sp. M7 was investigated after 1, 4, and 7 days of incubation, determining chloride ion release, and residues in the supernatants by GC with µECD detection. The results show that both the α- and β-HCH isomers were effectively metabolized by Streptomyces sp. M7, with 80 and 78 % degradation respectively, after 7 days of incubation. Moreover, pentachlorocyclohexenes and tetrachlorocyclohexenes were detected as metabolites. In addition, the formation of possible persistent compounds such as chlorobenzenes and chlorophenols were studied by GC-MS, while no phenolic compounds were detected. In conclusion, we have demonstrated for the first time that Streptomyces sp. M7 can degrade α- and β-isomers individually or combined with γ-HCH and could be considered as a potential agent for bioremediation of environments contaminated by organochlorine isomers. PMID:27038951

  18. Microbial degradation of a metal organic biocide in soils; Mikrobieller Abbau eines im Holzschutz verwendeten metallorganischen Biozids im Boden

    Energy Technology Data Exchange (ETDEWEB)

    Jakobs, Desiree

    2010-06-17

    The soil microbial community is able to degrade wood and variety of chemical wood-preservatives (WP) to generate energy by producing CO{sub 2} and as nutrition source to establish biomass. This work is focused on the characterisation of the microbial degradation of metal-organic WP including Copper-HDO (Cu-HDO) as biocide via {sup 13}C tracer experiments. Investigations with sterilized and non-sterilized soul incubated with Cu-HDO demonstrated that degradation of Cu-HDO was accelerated by the presence of the soil microbial community. Leaching of treated wood into the surrounding soil is characterized by low Cu-HDO concentrations (5 {mu}g - 20 {mu}g). Measurements of such biocide-concentrations by HPLC over time showed that Cu-HDO was degraded within a few days of soil incubation. Cu-HDO solely was degraded faster in soil compared to Cu-HDO as part of a WP. Presence of Cu-HDO significantly decreased the overall soil respiration compared to samples without Cu-HDO. Detailed information of the microbial metabolic pathways was achieved by comparison of {sup 12}C and {sup 13}C enriched Cu-HDO experiments and thereafter SIP-PLFA analysis. Monitoring of the {delta}{sup 13}C in PLFAs revealed that the carbon derived from the biocide was integrated nearly exclusively into the abundant PLFAs affiliated to gram negative bacteria. PLFAs indicative for fungi and other eukaryotic organism could be found only in low relative abundances and without {delta}{sup 13}C enrichment. This result suggests that eukaryotes were not involved in utilization of Copper-HADO based carbon. To characterise the impact of the co-biocide HDO on the microbial community the composition of the microbial community present at the surface of Copper-HDO, Copper-Amine treated specimens as well as of untreated specimens in soil contact was investigated. The bacterial community structure was characterized by the T-RFLP fingerprinting technique whereas the eukaryotic community structure was analyzed by the SSCP

  19. Microsensor Measurements of Sulfate Reduction and Sulfide Oxidation in Compact Microbial Communities of Aerobic Biofilms Rid A-1977-2009

    DEFF Research Database (Denmark)

    KUHL, M.; JØRGENSEN, BB

    1992-01-01

    The microzonation of O2 respiration, H2S oxidation, and SO4(2-) reduction in aerobic trickling-filter biofilms was studied by measuring concentration profiles at high spatial resolution (25 to 100-mu-m) with microsensors for O2, S2-, and pH. Specific reaction rates were calculated from measured......, whereas sulfate reduction occurred in deeper, anoxic parts of the biofilm. Sulfate reduction accounted for up to 50% of the total mineralization of organic carbon in the biofilms. All H2S produced from sulfate reduction was reoxidized by O2 in a narrow reaction zone, and no H2S escaped to the overlying...... water. Turnover times of H2S and O2 in the reaction zone were only a few seconds owing to rapid bacterial H2S oxidation. Anaerobic H2S oxidation with NO3- could be induced by addition of nitrate to the medium. Total sulfate reduction rates increased when the availability of SO4(2-) or organic substrate...

  20. Lessons learned from the Febex in situ test: geochemical processes associated to the microbial degradation and gas generation

    International Nuclear Information System (INIS)

    existence of gaps between the bentonite blocks, which favour the development and growth of inactive and dormant cells or spores belonging to the original bentonite. In this work, the observed geochemical and corrosion processes influenced both by organic matter degradation and micro-organisms in the 1:1 scale FEBEX in situ test (Grimsel, Switzerland) are described. This test consists of two heaters, simulating radioactive waste containers, emplaced in a horizontal gallery and surrounded by a highly compacted bentonite barrier. Samples from pore water, gases and bentonite (SHSDI-01: clay in contact with AISI 316L metal; S29 and BSBI-26: clay in contact with carbon steel) have been analysed. The samples were obtained during the test and the dismantling of the heater 1 after six years of experiment. The solid samples were analysed by XRD, SEM, XPS, FTIR, ATD-TG and chemical analysis; the water samples by IC and ICP-OES, and the gases by gas chromatography. Different geochemical processes have been detected as a function of the temperature and water content of the samples. When the water content is high, there are aerobic respiration and fermentation processes, anaerobic respiration with SO42- as electron acceptor, and anaerobic production of methane with CO2 as electron acceptor. In a first phase, both oxygen consumption and an increase of CH4 and CO2 is observed. Afterwards, there is a reduction of sulfates by SRB bacteria, which provokes corrosion processes. As a consequence, a precipitation of sulphurs, iron oxy-hydroxides and carbonates occurs, as well as H2 generation. There is an increase of the iron content in the smectite and the neo-formation of zeolites. However this alteration is punctual and localized. The redox potential of the bentonite pore water was of -284 mV. When the temperature is high and water content is low, other processes take place

  1. Microbial degradation of high impact polystyrene (HIPS), an e-plastic with decabromodiphenyl oxide and antimony trioxide.

    Science.gov (United States)

    Sekhar, Vini C; Nampoothiri, K Madhavan; Mohan, Arya J; Nair, Nimisha R; Bhaskar, Thallada; Pandey, Ashok

    2016-11-15

    Accumulation of electronic waste has increased catastrophically and out of that various plastic resins constitute one of the leading thrown out materials in the electronic machinery. Enrichment medium, containing high impact polystyrene (HIPS) with decabromodiphenyl oxide and antimony trioxide as sole carbon source, was used to isolate microbial cultures. The viability of these cultures in the e-plastic containing mineral medium was further confirmed by triphenyl tetrazolium chloride (TTC) reduction test. Four cultures were identified by 16S rRNA sequencing as Enterobacter sp., Citrobacter sedlakii, Alcaligenes sp. and Brevundimonas diminuta. Biodegradation experiments were carried out in flask level and gelatin supplementation (0.1% w/v) along with HIPS had increased the degradation rate to a maximum of 12.4% (w/w) within 30days. This is the first report for this kind of material. The comparison of FTIR, NMR, and TGA analysis of original and degraded e-plastic films revealed structural changes under microbial treatment. Polystyrene degradation intermediates in the culture supernatant were also detected using HPLC analysis. The gravity of biodegradation was validated by morphological changes under scanning electron microscope. All isolates displayed depolymerase activity to substantiate enzymatic degradation of e-plastic.

  2. Ultrasonically enhanced delivery and degradation of PAHs in a polymer-liquid partitioning system by a microbial consortium.

    Science.gov (United States)

    Isaza, Pedro A; Daugulis, Andrew J

    2009-09-01

    The current study examined the effects of ultrasonic irradiation on mass transfer and degradation of PAHs, by an enriched consortium, when delivered from polymeric matrices. Rates of release into methanol under sonicated conditions, relative to unmixed cases, for phenanthrene, fluoranthene, pyrene, and benzo[a]pyrene were increased approximately fivefold, when delivered from Desmopan 9370 A (polyurethane). Similar effects were observed in Hytrel and Kraton D4150 K polymers as well as recycled Bridgestone tires. Enhancements were also displayed as shifts to higher release equilibria under sonicated conditions, relative to non-sonicated cases, agreeing with current knowledge in sonochemistry and attributed to cavitation. Ultrasonic effects on microbial activity were also investigated and cell damage was found to be non- permanent with consortium re-growth being observed after sonic deactivation. Finally, the lumped effect of sonication on degradation of phenanthrene delivered from Desmopan was examined under the absence and presence of sonication. Rates of degradation were found to be increased by a factor of four demonstrating the possibility of using ultrasonic irradiation for improved mass transport in solid-liquid systems. Cellular inactivation effects were not evident, and this was attributed to the attenuation of sonic energy arising from the presence of solid polymer materials in the medium. The findings of the study demonstrate that sonication can be used to improve mass transport of poorly soluble compounds in microbial degradations, and alleviate limiting steps of soil remediation processes proposed in previous research. PMID:19418561

  3. A study on significant microbial interaction leading to decolorization and degradation of textile dye Rubine 3GP.

    Science.gov (United States)

    Phugare, Swapnil S; Kagalkar, Anuradha N; Govindwar, Sanjay P; Jadhav, Jyoti P

    2011-10-01

    The present study evaluates an obligatory interaction between the yeast Saccharomyces cerevisiae NCIM 3312 and the bacterium Pseudomonas sp. strain BCH3 for the biodegradation of the dye Rubin 3GP (R3GP). No significant degradation of R3GP was observed either by Saccharomyces cerevisiae NCIM 3312 or by Pseudomonas sp. strain BCH3, when both the cultures were tested individually under their respective optimum medium conditions. However, when both of them were allowed to intermingle with each other, R3GP was found to be degraded within 72 h, with a steady increase in β -1,3-glucanase, chitinase and protease activity in the culture supernatant; indicating the possible role of Pseudomonas sp. strain BCH3 in cell wall lysis of S. cerevisiae NCIM 3312. The present study elucidates a rare microbial interaction where the bacterium Pseudomonas sp. strain BCH3 utilizes lysed yeast cells as the sole source of nutrients for its own growth and subsequently performs decolorization and degradation of R3GP. Enzymatic status showed involvement of various oxidoreductive enzymes like lignin peroxidase, laccase, DCIP reductase and azo reductase, indicating their role in decolorization and degradation of R3GP. Degradation was confirmed using HPLC, FTIR analysis and the biochemical pathway of degradation was elucidated by using GC-MS analysis.

  4. Does microbial centimeter-scale heterogeneity impact MCPA degradation in and leaching from a loamy agricultural soil?

    Science.gov (United States)

    Rosenbom, Annette E; Binning, Philip J; Aamand, Jens; Dechesne, Arnaud; Smets, Barth F; Johnsen, Anders R

    2014-02-15

    The potential for pesticide degradation varies greatly at the centimeter-scale in agricultural soil. Three dimensional numerical simulations were conducted to evaluate how such small-scale spatial heterogeneity may affect the leaching of the biodegradable pesticide 2-methyl-4-chlorophenoxyacetic acid (MCPA) in the upper meter of a variably-saturated, loamy soil profile. To incorporate realistic spatial variation in degradation potential, we used data from a site where 420 mineralization curves over 5 depths have been measured. Monod kinetics was fitted to the individual curves to derive initial degrader biomass values, which were incorporated in a reactive transport model to simulate heterogeneous biodegradation. Six scenarios were set up using COMSOL Multiphysics to evaluate the difference between models having different degrader biomass distributions (homogeneous, heterogeneous, or no biomass) and either matrix flow or preferential flow through a soil matrix with a wormhole. MCPA leached, within 250 days, below 1m only when degrader biomass was absent and preferential flow occurred. Both biodegradation in the plow layer and the microbially active lining of the wormhole contributed to reducing MCPA-leaching below 1m. The spatial distribution of initial degrader biomass within each soil matrix layer, however, had little effect on the overall MCPA-leaching. PMID:24291558

  5. Research Progress on Microbial Degradation of Degradable Plastics%可降解塑料的微生物降解研究进展

    Institute of Scientific and Technical Information of China (English)

    毛海龙; 白俊岩; 姜虎生; 王战勇

    2014-01-01

    With the widespread using of plastic materials,plastics have caused huge environmental pollution and pressure of waste disposal. Using biodegradation plastics to replace traditional plastics is one of the most important ways to solve the problem. Biodegradation of degradable plastics is completed by microorganisms and their degrading enzymes. This article provides an overview of current research on microbial degradation and makes certain that the im-portance of microorganisms in biodegradable plastics degradation.%塑料材料的广泛使用给环境带了巨大的污染和处理压力,使用可降解塑料替代传统塑料是解决这一问题的重要途径。可降解塑料的生物降解是由相应的微生物和降解酶来完成的。综述了目前常见的生物降解塑料的微生物降解研究和进展情况,明确了微生物在可降解塑料生物降解中的重要性。

  6. System and method for preparing near-surface heavy oil for extraction using microbial degradation

    Energy Technology Data Exchange (ETDEWEB)

    Busche, Frederick D. (Highland Village, TX); Rollins, John B. (Southlake, TX); Noyes, Harold J. (Golden, CO); Bush, James G. (West Richland, WA)

    2011-04-12

    A system and method for enhancing the recovery of heavy oil in an oil extraction environment by feeding nutrients to a preferred microbial species (bacteria and/or fungi). A method is described that includes the steps of: sampling and identifying microbial species that reside in the oil extraction environment; collecting fluid property data from the oil extraction environment; collecting nutrient data from the oil extraction environment; identifying a preferred microbial species from the oil extraction environment that can transform the heavy oil into a lighter oil; identifying a nutrient from the oil extraction environment that promotes a proliferation of the preferred microbial species; and introducing the nutrient into the oil extraction environment.

  7. Microbial degradation of the brominated flame retardant TBNPA by groundwater bacteria: laboratory and field study.

    Science.gov (United States)

    Balaban, Noa; Bernstein, Anat; Gelman, Faina; Ronen, Zeev

    2016-08-01

    In the present study, the biodegradation of the brominated flame retardant tribromoneopentylalcohol (TBNPA) by a groundwater enrichment culture was investigated using a dual carbon ((13)C/(12)C)- bromine ((81)Br/(79)Br) stable isotope analysis. An indigenous aerobic bacterial consortium was enriched from the polluted groundwater underlying an industrial site in the northern Negev Desert, Israel, where TBNPA is an abundant pollutant. Aerobic biodegradation was shown to be rapid, with complete debromination within a few days, whereas anaerobic biodegradation was not observed. Biodegradation under aerobic conditions was accompanied by a significant carbon isotope effect with an isotopic enrichment factor of ɛCbulk = -8.8‰ ± 1.5‰, without any detectable bromine isotope fractionation. It was found that molecular oxygen is necessary for biodegradation to occur, suggesting an initial oxidative step. Based on these results, it was proposed that H abstraction from the C-H bond is the first step of TBNPA biodegradation under aerobic conditions, and that the C-H bond cleavage results in the formation of unstable intermediates, which are rapidly debrominated. A preliminary isotopic analysis of TBNPA in the groundwater underlying the industrial area revealed that there are no changes in the carbon and bromine isotope ratio values downstream of the contamination source. Considering that anoxic conditions prevail in the groundwater of the contaminated site, the lack of isotope shifts in TBNPA indicates the lack of TBNPA biodegradation in the groundwater, in accordance with our findings. PMID:27183339

  8. Effects of Different Types of Sludge on Soil Microbial Properties: A Field Experiment on Degraded Mediterranean Soils

    Institute of Scientific and Technical Information of China (English)

    D.TARRAS(O)N; G.OJEDA; O.ORTIZ; J.M.ALCA(N)IZ

    2010-01-01

    T The recycling of suitable organic wastes can enhance soil fertility via effects on soil physical, chemical and biological properties. To compare the effects of digested (DS), thermally dried (TDS) and composted dewatered (CDS) sewage sludge on soil microbiological properties, an experiment was conducted at field sites for more than one year (401 d) when applied to two Mediterranean degraded soils (loam and loamy sand soils). All three types of sewage sludge had a significant effect on measured parameters. In a short time, the plots of both loamy sand and loam soils amended with TDS showed the highest microbial basal respiration (loam soil: P < 0.01; loamy sand soil: P < 0.001) and carbon mineralization coefficient (loam soil: P < 0.01; loamy sand soil: P < 0.001). Furthermore, on loamy sand soil, the plots amended with TDS showed the highest microbial metabolic quotient (qCO2) (P < 0.05). This study revealed that the addition of sludge caused transient non-equilibrium effects on almost all soil microbial properties. However, there were no differences one year later because the remaining organic carbon was stable and quite similar in all treatments. These results may have practical implications for the rehabilitation of degraded soils.

  9. Metataxonomic profiling and prediction of functional behaviour of wheat straw degrading microbial consortia

    NARCIS (Netherlands)

    Jiménez Avella, Diego; Dini Andreote, Francisco; van Elsas, Jan Dirk

    2014-01-01

    Background: Mixed microbial cultures, in which bacteria and fungi interact, have been proposed as an efficient way to deconstruct plant waste. The characterization of specific microbial consortia could be the starting point for novel biotechnological applications related to the efficient conversion

  10. Mono-chlorophenol degradation by pseudomonas putida CP1 and a mixed microbial population

    OpenAIRE

    Farrell, Alan

    2000-01-01

    A commercial mixed culture, Biolyte HAB, degraded mono-chlorophenols using a metci- cleavage pathway. 2- and 3-chlorophenol degradation was incomplete, leading to the accumulation of dead-end metabolites. Biolyte HAB was capable of the complete degradation of 2.34 mM 4-chlorophenol, via the intermediate 5-chloro-2- hydroxymuconic semialdehyde, using the meta- cleavage pathway. Pseudomonas putida CPI degraded mono-chlorophenols to completion via an orthocleavage pathway. The ability of P. ...

  11. Microbial dynamics and properties of aerobic granules developed in a laboratory-scale sequencing batch reactor with an intermediate filamentous bulking stage.

    Science.gov (United States)

    Aqeel, H; Basuvaraj, M; Hall, M; Neufeld, J D; Liss, S N

    2016-01-01

    Aerobic granules offer enhanced biological nutrient removal and are compact and dense structures resulting in efficient settling properties. Granule instability, however, is still a challenge as understanding of the drivers of instability is poorly understood. In this study, transient instability of aerobic granules, associated with filamentous outgrowth, was observed in laboratory-scale sequencing batch reactors (SBRs). The transient phase was followed by the formation of stable granules. Loosely bound, dispersed, and pinpoint seed flocs gradually turned into granular flocs within 60 days of SBR operation. In stage 1, the granular flocs were compact in structure and typically 0.2 mm in diameter, with excellent settling properties. Filaments appeared and dominated by stage 2, resulting in poor settleability. By stage 3, the SBRs were selected for larger granules and better settling structures, which included filaments that became enmeshed within the granule, eventually forming structures 2-5 mm in diameter. Corresponding changes in sludge volume index were observed that reflected changes in settleability. The protein-to-polysaccharide ratio in the extracted extracellular polymeric substance (EPS) from stage 1 and stage 3 granules was higher (2.8 and 5.7, respectively), as compared to stage 2 filamentous bulking (1.5). Confocal laser scanning microscopic (CLSM) imaging of the biomass samples, coupled with molecule-specific fluorescent staining, confirmed that protein was predominant in stage 1 and stage 3 granules. During stage 2 bulking, there was a decrease in live cells; dead cells predominated. Denaturing gradient gel electrophoresis (DGGE) fingerprint results indicated a shift in bacterial community composition during granulation, which was confirmed by 16S rRNA gene sequencing. In particular, Janthinobacterium (known denitrifier and producer of antimicrobial pigment) and Auxenochlorella protothecoides (mixotrophic green algae) were predominant during stage

  12. Degradation of Cry1Ab Protein Within Transgenic Bt Maize Tissue by Composite Microbial System of MC1

    Institute of Scientific and Technical Information of China (English)

    Meng Yao; Gu Wan-rong; Ye Le-fu; Chen Dong-sheng; Li Jing; Wei Shi

    2014-01-01

    Environmental safety issues involved in transgenic plants have become the concern of researchers, practitioners and policy makers in recent years. Potential differences between Bt maize (ND1324 and ND2353 expressing the insecticidal Cry1Ab protein) and near-isogenic non-Bt varieties (ND1392 and ND223) in their influence on the composite microbial system of MC1 during the fermentation process were studied during 2011-2012. Cry1Ab protein in Bt maize residues didn't affect characteristics of lignocellulose degradation by MC1, pH of fermentation broth decreasing at initial stage and increasing at later stage of degradation. The quality of various volatile products in fermentation broth showed that no significant difference of residues fermentation existed between Bt maize and non-Bt maize. During the fermentation MC1 efficiently degraded maize residues by 83%-88%, and cellulose, hemicelluloses and lignin content decreased by 70%-72%, 72%-75% and 30%-37%, respectively. Besides that, no consistent difference was found between Bt and non-Bt maize residues lignocellulose degradation by MC1 during the fermentation process. MC1 degraded 88%-89% Cry1Ab protein in Bt maize residues, and in the fermentation broth of MC1 and bacteria of MC1 Cry1Ab protein was not detected. DGGE profile analyses revealed that the microbial community drastically changed during 1-3 days and became stable until the 9th day. Though the dominant strains at different fermentation stages had significantly changed, no difference on the dominant strains was observed between Bt and non-Bt maize at different stages. Our study indicated that Cry1Ab protein did not influence the growth characteristic of MC1.

  13. Identification of Comamonas testosteroni as an androgen degrader in sewage

    Science.gov (United States)

    Chen, Yi-Lung; Wang, Chia-Hsiang; Yang, Fu-Chun; Ismail, Wael; Wang, Po-Hsiang; Shih, Chao-Jen; Wu, Yu-Ching; Chiang, Yin-Ru

    2016-01-01

    Numerous studies have reported the masculinization of freshwater wildlife exposed to androgens in polluted rivers. Microbial degradation is a crucial mechanism for eliminating steroid hormones from contaminated ecosystems. The aerobic degradation of testosterone was observed in various bacterial isolates. However, the ecophysiological relevance of androgen-degrading microorganisms in the environment is unclear. Here, we investigated the biochemical mechanisms and corresponding microorganisms of androgen degradation in aerobic sewage. Sewage samples collected from the Dihua Sewage Treatment Plant (Taipei, Taiwan) were aerobically incubated with testosterone (1 mM). Androgen metabolite analysis revealed that bacteria adopt the 9, 10-seco pathway to degrade testosterone. A metagenomic analysis indicated the apparent enrichment of Comamonas spp. (mainly C. testosteroni) and Pseudomonas spp. in sewage incubated with testosterone. We used the degenerate primers derived from the meta-cleavage dioxygenase gene (tesB) of various proteobacteria to track this essential catabolic gene in the sewage. The amplified sequences showed the highest similarity (87–96%) to tesB of C. testosteroni. Using quantitative PCR, we detected a remarkable increase of the 16S rRNA and catabolic genes of C. testosteroni in the testosterone-treated sewage. Together, our data suggest that C. testosteroni, the model microorganism for aerobic testosterone degradation, plays a role in androgen biodegradation in aerobic sewage. PMID:27734937

  14. Two-stage anaerobic and post-aerobic mesophilic digestion of sewage sludge: Analysis of process performance and hygienization potential.

    Science.gov (United States)

    Tomei, M Concetta; Mosca Angelucci, Domenica; Levantesi, Caterina

    2016-03-01

    Sequential anaerobic-aerobic digestion has been demonstrated to be effective for enhanced sludge stabilization, in terms of increased solid reduction and improvement of sludge dewaterability. In this study, we propose a modified version of the sequential anaerobic-aerobic digestion process by operating the aerobic step under mesophilic conditions (T=37 °C), in order to improve the aerobic degradation kinetics of soluble and particulate chemical oxygen demand (COD). Process performance has been assessed in terms of "classical parameters" such as volatile solids (VS) removal, biogas production, COD removal, nitrogen species, and polysaccharide and protein fate. The aerobic step was operated under intermittent aeration to achieve nitrogen removal. Aerobic mesophilic conditions consistently increased VS removal, providing 32% additional removal vs. 20% at 20 °C. Similar results were obtained for nitrogen removal, increasing from 64% up to 99% at the higher temperature. Improved sludge dewaterability was also observed with a capillary suction time decrease of ~50% during the mesophilic aerobic step. This finding may be attributable to the decreased protein content in the aerobic digested sludge. The post-aerobic digestion exerted a positive effect on the reduction of microbial indicators while no consistent improvement of hygienization related to the increased temperature was observed. The techno-economic analysis of the proposed digestion layout showed a net cost saving for sludge disposal estimated in the range of 28-35% in comparison to the single-phase anaerobic digestion. PMID:26760266

  15. Alkanindiges illinoisensis gen. nov., sp. nov., an obligately hydrocarbonoclastic, aerobic squalane-degrading bacterium isolated from oilfield soils.

    Science.gov (United States)

    Bogan, Bill W; Sullivan, Wendy R; Kayser, Kevin J; Derr, K D; Aldrich, Henry C; Paterek, J Robert

    2003-09-01

    An alkane-degrading bacterium, designated GTI MVAB Hex1(T), was isolated from chronically crude oil-contaminated soil from an oilfield in southern Illinois. The isolate grew very weakly or not at all in minimal or rich media without hydrocarbons. Straight-chain aliphatic hydrocarbons, such as hexadecane and heptadecane, greatly stimulated growth; shorter-chain (squalane. The latter of these was most intriguing, as catabolism of squalane has hitherto been reported only for Mycobacterium species. Although unable to utilize mono- or polycyclic aromatic hydrocarbons as sole carbon sources, the isolate did show slight fluorene-mineralizing capability in Luria-Bertani medium, which was partially repressed by hexadecane. In contrast, hexadecane supplementation greatly increased mineralization of (14)C-dodecane, which was not a growth substrate. Further testing emphasized the isolate's extremely narrow substrate range, as only Tween 40 and Tween 80 supported significant growth. Microscopic examination (by scanning and transmission electron microscopy) revealed a slightly polymorphic coccoidal to bacillar morphology, with hydrocarbon-grown cells tending to be more elongated. When grown with hexadecane, GTI MVAB Hex1(T) accumulated a large number of electron-transparent intracytoplasmic inclusion bodies. These were also prevalent during growth in the presence of squalane. Smaller inclusion bodies were observed occasionally with pristane supplementation; they were, however, absent during growth on crude oil. On the basis of 16S rRNA gene sequence data and range of growth substrates, classification of this isolate as the type strain of Alkanindiges illinoisensis gen. nov., sp. nov. is proposed, which is most closely related (approx. 94 % sequence similarity) to Acinetobacter junii.

  16. Assessment of the effects of microbially influenced degradation on a massive concrete structure. Final report, Report 5

    Energy Technology Data Exchange (ETDEWEB)

    Rogers, R.D. [Biodegradation Systems, Inc., Idaho Falls, ID (United States)

    1995-07-08

    There is a need to estimate the effect of environmental conditions on construction materials to be used in the repository at Yucca Mountain. Previous reports from this project have demonstrated that it is important to develop an understanding of microbially influenced degradation (MID) development and its influence on massive concrete structures. Further, it has been shown that the most effective way to obtain quantitative data on the effects of MID on the structural integrity of repository concrete is to study manmade, analog structures known to be susceptible to MID. The cooling tower shell located at the Ohaaki Power Station near Wairakei, New Zealand is such a structure.

  17. Assessment of the effects of microbially influenced degradation on a massive concrete structure. Final report, Report 5

    International Nuclear Information System (INIS)

    There is a need to estimate the effect of environmental conditions on construction materials to be used in the repository at Yucca Mountain. Previous reports from this project have demonstrated that it is important to develop an understanding of microbially influenced degradation (MID) development and its influence on massive concrete structures. Further, it has been shown that the most effective way to obtain quantitative data on the effects of MID on the structural integrity of repository concrete is to study manmade, analog structures known to be susceptible to MID. The cooling tower shell located at the Ohaaki Power Station near Wairakei, New Zealand is such a structure

  18. Impact of soil matric potential on the fine-scale spatial distribution and activity of specific microbial degrader communities.

    Science.gov (United States)

    Monard, Cécile; Mchergui, Chokri; Nunan, Naoise; Martin-Laurent, Fabrice; Vieublé-Gonod, Laure

    2012-09-01

    The impact of the soil matric potential on the relationship between the relative abundance of degraders and their activity and on the spatial distribution of both at fine scales was determined to understand the role of environmental conditions in the degradation of organic substrates. The mineralization of (13) C-glucose and (13) C-2,4-dichlorophenoxyacetic acid (2,4-D) was measured at different matric potentials (-0.001, -0.01 and -0.316 MPa) in 6 × 6 × 6 mm(3) cubes excised from soil cores. At the end of the incubation, total bacterial and 2,4-D degrader abundances were determined by quantifying the 16S rRNA and the tfdA genes, respectively. The mineralization of 2,4-D was more sensitive to changes in matric potential than was that of glucose. The amount and spatial structure of 2,4-D mineralization decreased with matric potential, whilst the spatial variability increased. On the other hand, the spatial variation of glucose mineralization was less affected by changes in matric potential. The relationship between the relative abundance of 2,4-D degraders and 2,4-D mineralization was significantly affected by matric potential: the relative abundance of tfdA needed to be higher to reach a given level of 2,4-D mineralization in dryer than in moister conditions. The data show how microbial interactions with their microhabitat can have an impact on soil processes at larger scales. PMID:22531018

  19. Microbial dynamics in anaerobic enrichment cultures degrading di-n-butyl phthalic acid ester

    DEFF Research Database (Denmark)

    Trably, Eric; Batstone, Damien J.; Christensen, Nina;

    2008-01-01

    , a microorganism described previously as an anaerobic benzaldehyde degrader. Within the archaeal community, there was a shift between two different species of the genus Methanosaeta sp., indicating a highly specific impact of DBP or degradation products on archaeal species. RNA-directed probes were designed from...

  20. Linamarase production by some microbial isolates and a comparison of the rate of degradation of cassava cyanide by microbial and cassava linamarases

    Directory of Open Access Journals (Sweden)

    Ogbonnaya Nwokoro

    2016-01-01

    Full Text Available Production of linamarase and the effects of media composition on enzyme production were studied. A total of eight linamarase-producing bacteria were isolated from fermenting cassava tubers and soil samples. Selection of the isolates was based on their high growth in media containing 800 mg/L potassium cyanide solution. Eight of the isolates which showed very high growth in the growth medium as demonstrated by increase in their optical density readings to at least 0.6 in the cyanide containing media were selected for further studies. The isolates were identified as Lactobacillus plantarum, Lactobacillus fermentum, Lactobacillus amylovorus, Lactobacillus cellobiosus, Leuconostoc mesenteroides, Pseudomonas stutzeri, Bacillus pumilus and Bacillus subtilis. All the isolates were grown in media containing Tween 80 solution and in control media without the surfactant. Best enzyme activity of 6.82 U/mL was obtained in the medium containing Tween 80 solution and Lactobacillus fermentum as the test bacterium. Comparatively, linamarase production by the isolates in media without Tween 80 showed lower enzyme productivity. Cassava endogenous and microbial enzymes were tested for their abilities to hydrolyze cyanide in cassava flour samples pretreated to either remove the endogenous or microbial enzyme. Residual cyanide in cassava flour samples treated with linamarase of Lactobacillus plantarum was undecteded in 30 h, while in contrast, the residual cyanide in cassava flour samples treated with endogenous linamarase was 0.39 mg/10g cassava flour after 80 h. Residual cyanide in the untreated control sample was 1.98 mg HCN /10g cassava flour after 80 h. The results from this finding demonstrated improved cassava cyanide degradation with microbial linamarase as compared to endogenous cassava linamarase. Massive inoculation of fermenting cassava tubers with the isolates reported in this study would enable better control of the cassava fermentation process and may

  1. Survey of microbial oxygenases: trichloroethylene degradation by propane-oxidizing bacteria.

    OpenAIRE

    Wackett, L P; Brusseau, G A; Householder, S R; Hanson, R S

    1989-01-01

    Microorganisms that biosynthesize broad-specificity oxygenases to initiate metabolism of linear and branched-chain alkanes, nitroalkanes, cyclic ketones, alkenoic acids, and chromenes were surveyed for the ability to biodegrade trichloroethylene (TCE). The results indicated that TCE oxidation is not a common property of broad-specificity microbial oxygenases. Bacteria that contained nitropropane dioxygenase, cyclohexanone monooxygenase, cytochrome P-450 monooxygenases, 4-methoxybenzoate monoo...

  2. Physiological and Chemical Investigations into Microbial Degradation of Synthetic Poly(cis-1,4-isoprene)

    OpenAIRE

    Bode, Helge B; Zeeck, Axel; Plückhahn, Kirsten; Jendrossek, Dieter

    2000-01-01

    Streptomyces coelicolor 1A and Pseudomonas citronellolis were able to degrade synthetic high-molecular-weight poly(cis-1,4-isoprene) and vulcanized natural rubber. Growth on the polymers was poor but significantly greater than that of the nondegrading strain Streptomyces lividans 1326 (control). Measurement of the molecular weight distribution of the polymer before and after degradation showed a time-dependent increase in low-molecular-weight polymer molecules for S. coelicolor 1A and P. citr...

  3. Bioremediation of textile azo dyes by aerobic bacterial consortium.

    Science.gov (United States)

    Senan, Resmi C; Abraham, T Emilia

    2004-08-01

    An aerobic bacterial consortium consisting of two isolated strains (BF1, BF2) and a strain of Pseudomonas putida (MTCC1194) was developed for the aerobic degradation of a mixture of textile azodyes and individual azodyes at alkaline pH (9-10.5) and salinity (0.9-3.68 g/l) at ambient temperature (28 +/- 2 degrees C). The degradation efficiency of the strains in different media (mineral media and in the Simulated textile effluent (STE)) and at different dye concentrations were studied. The presence of a H2O2 independent oxidase-laccase (26.5 IU/ml) was found in the culture filtrate of the organism BF2. The analysis of the degraded products by TLC and HPLC, after the microbial treatment of the dyes showed the absence of amines and the presence of low molecular weight oxidative degradation products. The enzymes present in the crude supernatant was found to be reusable for the dye degradation.

  4. Microbial degradation processes in radioactive waste repository and in nuclear fuel storage areas

    International Nuclear Information System (INIS)

    The intent of the workshop organizers was to convene experts in the fields of corrosion and spent nuclear fuels. The major points which evolved from the interaction of microbiologists, material scientists, and fuel storage experts are as follows: Corrosion of basin components as well as fuel containers or cladding is occurring; Water chemistry monitoring, if done in the storage facility does not take into account the microbial component; Microbial influenced corrosion is an area that many have not considered to be an important contributor in the aging of metallurgical materials especially those exposed to a radiation field; Many observations indicate that there is a microbial or biological presence in the storage facilities but these observations have not been correlated with any deterioration or aging phenomena taking place in the storage facility; The sessions on the fundamentals of microbial influenced corrosion and biofilm pointed out that these phenomena are real, occurring on similar materials in other industries and probably are occurring in the wet storage of spent fuel; All agreed that more monitoring, testing, and education in the field of biological mediate processes be performed and financially supported; Loosing the integrity of fuel assemblies can only cause problems, relating to the future disposition of the fuel, safety concerns, and environmental issues; In other rad waste scenarios, biological processes may be playing a role, for instance in the mobility of radionuclides in soil, decomposition of organic materials of the rad waste, gas production, etc. The fundamental scientific presentations discussed the full gamut of microbial processes that relate to biological mediated effects on metallic and non-metallic materials used in the storage and containment of radioactive materials

  5. Microbial degradation of aliphatic and aliphatic-aromatic co-polyesters.

    Science.gov (United States)

    Shah, Aamer Ali; Kato, Satoshi; Shintani, Noboru; Kamini, Numbi Ramudu; Nakajima-Kambe, Toshiaki

    2014-04-01

    Biodegradable plastics (BPs) have attracted much attention since more than a decade because they can easily be degraded by microorganisms in the environment. The development of aliphatic-aromatic co-polyesters has combined excellent mechanical properties with biodegradability and an ideal replacement for the conventional nondegradable thermoplastics. The microorganisms degrading these polyesters are widely distributed in various environments. Although various aliphatic, aromatic, and aliphatic-aromatic co-polyester-degrading microorganisms and their enzymes have been studied and characterized, there are still many groups of microorganisms and enzymes with varying properties awaiting various applications. In this review, we have reported some new microorganisms and their enzymes which could degrade various aliphatic, aromatic, as well as aliphatic-aromatic co-polyesters like poly(butylene succinate) (PBS), poly(butylene succinate)-co-(butylene adipate) (PBSA), poly(ε-caprolactone) (PCL), poly(ethylene succinate) (PES), poly(L-lactic acid) (PLA), poly(3-hydroxybutyrate) and poly(3-hydoxybutyrate-co-3-hydroxyvalterate) (PHB/PHBV), poly(ethylene terephthalate) (PET), poly(butylene terephthalate) (PBT), poly(butylene adipate-co-terephthalate (PBAT), poly(butylene succinate-co-terephthalate) (PBST), and poly(butylene succinate/terephthalate/isophthalate)-co-(lactate) (PBSTIL). The mechanism of degradation of aliphatic as well as aliphatic-aromatic co-polyesters has also been discussed. The degradation ability of microorganisms against various polyesters might be useful for the treatment and recycling of biodegradable wastes or bioremediation of the polyester-contaminated environments. PMID:24522729

  6. Abundance of polymers degrading microorganisms in a sea-based solid waste disposal site.

    Science.gov (United States)

    Ishigaki, T; Sugano, W; Ike, M; Kawagoshi, Y; Fukunaga, I; Fujita, M

    2000-01-01

    In order to assess the degradability of plastics in solid waste disposal landfill sites, microbial populations capable of degrading five kinds of plastic-constituting polymers, poly epsilon-caprolactone (PCL), polylactic acid (PLA), polyethylene glycol (PEG), poly-beta-hydroxybutyrate (PHB) and cellulose acetate (CA), in a sea-based solid waste disposal site were investigated. Enumeration of aerobic and anaerobic polymers-degrading microorganisms (PDMs) was performed against to total 8 leachate samples, which were seasonally collected from the facultative pretreatment pond and the aerated lagoon. Both aerobic and anaerobic PDMs for natural polymers, PHB and CA, were found in all of the samples, while those for chemically-synthesized polymers, PCL, PLA and PEG, could not be always detected. In most cases, the ratios of the PHB- and CA-degraders to the heterotrophic bacterial population were more than 0.1%. On the other hand, the ratios of PCL-, PLA- and PEG-degraders were often much lower. These data indicate that the plastics degradation potential is commonly present in the studied disposal site, and that the degradation potential for plastics composed of chemically-synthesized polymers is inferior to that of natural polymers. Population sizes of the PDMs correlated to those of heterotrophic bacteria, and the counts of aerobic heterotrophic bacteria and PDMs in the aerated lagoon tended to be higher than those of anaerobic ones, indicating that the aeration of the leachate resulted in the activation of growth of whole aerobic microbial community including the PDMs. PMID:10957959

  7. Bioprospecting metagenomics of a microbial community on cotton degradation: Mining for new glycoside hydrolases.

    Science.gov (United States)

    Zhang, Guoxiu; Liu, Pei; Zhang, Lei; Wei, Wei; Wang, Xuedong; Wei, Dongzhi; Wang, Wei

    2016-09-20

    Glycoside hydrolases (GHases) of higher performance are immediately needed for efficient degradation of plant biomass into fermentable sugars in industrial processes. The current study represents functional characterization of the enzymatic repertoire involved in crude cotton biomass degradation. Physical contact between cells and substrate is necessary for efficient hydrolysis of cellulose. Cytophagales, which plays a major role in cotton biomass decomposition, was identified as a prevalent community member by 16S rRNA analysis. From the metagenome data, 2058 GHase homologs were identified, of which sixteen were successfully expressed in E. coli. Four enzymes showed activities on p-nitrophenyl-β-d-xylopyranoside, four showed activities on p-nitrophenyl-β-d-glucopyranoside, two had activities against p-nitrophenyl-β-d-glucuronide, one showed activity on laminarin, three had activities against p-nitrophenyl-N-acetyl-β-d-glucosaminide, one had activity towards carboxymethyl cellulose, and one towards p-nitrophenyl-β-d-mannopyranoside. Metagenomics provides a good resource for mining novel biomass degrading enzymes. The sixteen GHases that were cloned may have potential application for biomass conversion and bioproduct production. Functional characterization of the enzymatic repertoire in cotton biomass degradation and analysis of the GHases provide insight into the composition and interaction of enzymes and pathways of plant biomass degradation. PMID:27460447

  8. 微生物降解有机磷农药残留的研究进展%A review on microbial degradation of residues of organophosphorus pesticide

    Institute of Scientific and Technical Information of China (English)

    何霞; 白红娟

    2011-01-01

    This article focused on the review of the types of microbial degradation of Organophosphorus pesticide,degradation mechanism and degradation genes in recent years and discussed development trend of microbial degradation of organophosphorus pesticide,and exhibited some suggestions for further research.%从微生物降解有机磷农药的种类、降解机理、降解基因等方面综述了微生物降解有机磷农药近年来的研究进展,探讨了微生物降解有机磷农药研究领域的发展趋势及进一步的研究方向,并提出建议。

  9. Microbial degradation of hydrocarbons and its applications to enhanced oil recovery at lab scale

    OpenAIRE

    Pereira, Jorge F. B.; Gudiña, Eduardo J.; L. R. Rodrigues; J.A. Teixeira; Coutinho, J.A.P.

    2011-01-01

    The renewed interest in Enhanced Oil Recovery (EOR) techniques as a consequence of the current oil prices is boosting the development of the Microbial Enhanced Oil Recovery (MEOR). This technique is useful to recover incremental oil from a reservoir beyond primary and secondary recovery operations and can be carried by the injection of exogenous or stimulation of indigenous microorganisms. This last approach is here investigated. In this work we address the isolation and identification of mic...

  10. Rapid Evaluation of Power Degradation in Series Connection of Single Feeding Microsized Microbial Fuel Cells

    KAUST Repository

    Rojas, Jhonathan Prieto

    2014-07-08

    We have developed a sustainable, single feeding, microsized, air-cathode and membrane-free microbial fuel cells with a volume of 40 mu L each, which we have used for rapid evaluation of power generation and viability of a series array of three cells seeking higher voltage levels. Contrary to expectations, the achieved power density was modest (45 mWm(-3)), limited due to non-uniformities in assembly and the single-channel feeding system.

  11. Microbial Degradation of 2,4-Dichlorophenoxyacetic Acid on the Greenland Ice Sheet

    OpenAIRE

    Stibal, Marek; Bælum, Jacob; Holben, William E.; Sørensen, Sebastian R.; Jensen, Anders; Jacobsen, Carsten S.

    2012-01-01

    The Greenland ice sheet (GrIS) receives organic carbon (OC) of anthropogenic origin, including pesticides, from the atmosphere and/or local sources, and the fate of these compounds in the ice is currently unknown. The ability of supraglacial heterotrophic microbes to mineralize different types of OC is likely a significant factor determining the fate of anthropogenic OC on the ice sheet. Here we determine the potential of the microbial community from the surface of the GrIS to mineralize the ...

  12. Estimation of rates of aerobic hydrocarbon biodegradation by simulation of gas transport in the unsaturated zone

    Science.gov (United States)

    Lahvis, Matthew A.; Baehr, Arthur L.

    1996-07-01

    The distribution of oxygen and carbon dioxide gases in the unsaturated zone provides a geochemical signature of aerobic hydrocarbon degradation at petroleum product spill sites. The fluxes of these gases are proportional to the rate of aerobic biodegradation and are quantified by calibrating a mathematical transport model to the oxygen and carbon dioxide gas concentration data. Reaction stoichiometry is assumed to convert the gas fluxes to a corresponding rate of hydrocarbon degradation. The method is applied at a gasoline spill site in Galloway Township, New Jersey, to determine the rate of aerobic degradation of hydrocarbons associated with passive and bioventing remediation field experiments. At the site, microbial degradation of hydrocarbons near the water table limits the migration of hydrocarbon solutes in groundwater and prevents hydrocarbon volatilization into the unsaturated zone. In the passive remediation experiment a site-wide degradation rate estimate of 34,400 gyr-1 (11.7 gal. yr-1) of hydrocarbon was obtained by model calibration to carbon dioxide gas concentration data collected in December 1989. In the bioventing experiment, degradation rate estimates of 46.0 and 47.9 gm-2yr-1 (1.45×10-3 and 1.51×10-3 gal.ft.-2yr-1) of hydrocarbon were obtained by model calibration to oxygen and carbon dioxide gas concentration data, respectively. Method application was successful in quantifying the significance of a naturally occurring process that can effectively contribute to plume stabilization.

  13. Estimation of rates of aerobic hydrocarbon biodegradation by simulation of gas transport in the unsaturated zone

    Science.gov (United States)

    Lahvis, M.A.; Baehr, A.L.

    1996-01-01

    The distribution of oxygen and carbon dioxide gases in the unsaturated zone provides a geochemical signature of aerobic hydrocarbon degradation at petroleum product spill sites. The fluxes of these gases are proportional to the rate of aerobic biodegradation and are quantified by calibrating a mathematical transport model to the oxygen and carbon dioxide gas concentration data. Reaction stoichiometry is assumed to convert the gas fluxes to a corresponding rate of hydrocarbon degradation. The method is applied at a gasoline spill site in Galloway Township, New Jersey, to determine the rate of aerobic degradation of hydrocarbons associated with passive and bioventing remediation field experiments. At the site, microbial degradation of hydrocarbons near the water table limits the migration of hydrocarbon solutes in groundwater and prevents hydrocarbon volatilization into the unsaturated zone. In the passive remediation experiment a site-wide degradation rate estimate of 34,400 g yr-1 (11.7 gal. yr-1) of hydrocarbon was obtained by model calibration to carbon dioxide gas concentration data collected in December 1989. In the bioventing experiment, degradation rate estimates of 46.0 and 47.9 g m-2 yr-1 (1.45 x 10-3 and 1.51 x 10-3 gal. ft.-2 yr-1) of hydrocarbon were obtained by model calibration to oxygen and carbon dioxide gas concentration data, respectively. Method application was successful in quantifying the significance of a naturally occurring process that can effectively contribute to plume stabilization.

  14. Sequential photochemical and microbial degradation of organic molecules bound to humic Acid.

    Science.gov (United States)

    Amador, J A; Alexander, M; Zika, R G

    1989-11-01

    We studied the effects of photochemical processes on the mineralization by soil microorganisms of [2-C]glycine bound to soil humic acid. Microbial mineralization of these complexes in the dark increased inversely with the molecular weight of the complex molecules. Sunlight irradiation of glycine-humic acid complexes resulted in loss of absorbance in the UV range and an increase in the amount of C-labeled low-molecular-weight photoproducts and the rate and extent of mineralization. More than half of the radioactivity in the low-molecular-weight photoproducts appears to be associated with carboxylic acids. Microbial mineralization of the organic carbon increased with solar flux and was proportional to the loss of A(330). Mineralization was proportional to the percentage of the original complex that was converted to low-molecular-weight photoproducts. Only light at wavelengths below 380 nm had an effect on the molecular weight distribution of the products formed from the glycine-humic acid complexes and on the subsequent microbial mineralization. Our results indicate that photochemical processes generate low-molecular-weight, readily biodegradable molecules from high-molecular-weight complexes of glycine with humic acid.

  15. Assessment of microbial populations in methyl ethyl ketone degrading biofilters by denaturing gradient gel electrophoresis.

    Science.gov (United States)

    Li, C; Moe, W M

    2004-05-01

    Denaturing gradient gel electrophoresis (DGGE) analysis of polymerase chain reaction-amplified genes coding for 16S rRNA was used to assess differences in bacterial community structure as a function of spatial location along the height of two biofilters used to treat a model waste gas stream containing methyl ethyl ketone (MEK). One of the laboratory-scale biofilters was operated as a conventional continuous-flow biofilter (CFB) and the other was operated as a sequencing batch biofilter (SBB). Both biofilters, inoculated with an identical starting culture and operated over a period lasting more than 300 days, received the same influent MEK concentration and same mass of MEK on a daily basis. The systems differed, however, in terms of the fraction of time during which contaminated air was supplied and the overall operating strategy employed. DGGE analysis indicated that microbial community structures differed as a function of height in each of the biofilters. The DGGE banding patterns also differed between the two biofilters, suggesting that operating strategies imposed on the biofilters imparted a sufficiently large selective pressure to influence microbial community structures. This may explain, in part, the superior performance of the SBB over the CFB during model transient loading conditions, and it may open new possibilities for purposely manipulating the microbial populations in biofilters treating gas-phase contaminants in a manner that leads to more favorable treatment performance.

  16. Sequential photochemical and microbial degradation of organic molecules bound to humic acid

    International Nuclear Information System (INIS)

    We studied the effects of photochemical processes on the mineralization by soil microorganisms of [2-14C]glycine bound to soil humic acid. Microbial mineralization of these complexes in the dark increased inversely with the molecular weight of the complex molecules. Sunlight irradiation of glycine-humic acid complexes resulted in loss of absorbance in the UV range and an increase in the amount of 14C-labeled low-molecular-weight photoproducts and the rate and extent of mineralization. More than half of the radioactivity in the low-molecular-weight photoproducts appears to be associated with carboxylic acids. Microbial mineralization of the organic carbon increased with solar flux and was proportional to the loss of A330. Mineralization was proportional to the percentage of the original complex that was converted to low-molecular-weight photoproducts. Only light at wavelengths below 380 nm had an effect on the molecular weight distribution of the products formed from the glycine-humic acid complexes and on the subsequent microbial mineralization. Our results indicate that photochemical processes generate low-molecular-weight, readily biodegradable molecules from high-molecular-weight complexes of glycine with humic acid

  17. Current Status on Biochemistry and Molecular Biology of Microbial Degradation of Nicotine

    Directory of Open Access Journals (Sweden)

    Raman Gurusamy

    2013-01-01

    Full Text Available Bioremediation is one of the most promising methods to clean up polluted environments using highly efficient potent microbes. Microbes with specific enzymes and biochemical pathways are capable of degrading the tobacco alkaloids including highly toxic heterocyclic compound, nicotine. After the metabolic conversion, these nicotinophilic microbes use nicotine as the sole carbon, nitrogen, and energy source for their growth. Various nicotine degradation pathways such as demethylation pathway in fungi, pyridine pathway in Gram-positive bacteria, pyrrolidine pathway, and variant of pyridine and pyrrolidine pathways in Gram-negative bacteria have been reported. In this review, we discussed the nicotine-degrading pathways of microbes and their enzymes and biotechnological applications of nicotine intermediate metabolites.

  18. Nitrogen removal characteristics of indigenous aerobic denitrifiers and changes in the microbial community of a reservoir enclosure system via in situ oxygen enhancement using water lifting and aeration technology.

    Science.gov (United States)

    Zhou, Shilei; Huang, Tinglin; Ngo, Huu Hao; Zhang, Haihan; Liu, Fei; Zeng, Mingzheng; Shi, Jianchao; Qiu, Xiaopeng

    2016-08-01

    Indigenous aerobic denitrifiers of a reservoir system were enhanced in situ by water lifting and aeration technology. Nitrogen removal characteristics and changes in the bacterial community were investigated. Results from a 30-day experiment showed that the TN in the enhanced water system decreased from 1.08-2.02 to 0.75-0.91mg/L and that TN removal rates varied between 21.74% and 52.54% without nitrite accumulation, and TN removal rate of surface sediments reached 41.37±1.55%. The densities of aerobic denitrifiers in the enhanced system increased. Furthermore, the enhanced system showed a clear inhibition of Fe, Mn, and P performances. Community analysis using Miseq showed that diversity was higher in the in situ oxygen enhanced system than in the control system. In addition, the microbial composition was significantly different between systems. It can be concluded that in situ enhancement of indigenous aerobic denitrifiers is very effective in removing nitrogen from water reservoir systems. PMID:27128190

  19. ANAEROBIC AND AEROBIC TREATMENT OF CHLORINATED ALIPHATIC COMPOUNDS

    Science.gov (United States)

    Biological degradation of 12 chlorinated aliphatic compounds (CACs) was assessed in bench-top reactors and in serum bottle tests. Three continuously mixed daily batch-fed reactor systems were evaluated: anaerobic, aerobic, and sequential-anaerobic-aerobic (sequential). Glucose,...

  20. Aerobic mineralization of MTBE and tert-butyl alcohol by stream-bed sediment microorganisms

    Science.gov (United States)

    Bradley, P.M.; Landmeyer, J.E.; Chapelle, F.H.

    1999-01-01

    Microorganisms indigenous to the stream-bed sediments at two gasoline- contaminated groundwater sites demonstrated significant mineralization of the fuel oxygenates, methyl tert-butyl ether (MTBE) and tert-butyl alcohol (TBA). Up to 73% of [U-14C]-MTBE and 84% of [U-14C]-TBA were degraded to 14CO2 under mixed aerobic/anaerobic conditions. No significant mineralization was observed under strictly anaerobic conditions. The results indicate that, under the mixed aerobic/anaerobic conditions characteristic of stream-bed sediments, microbial processes may provide a significant environmental sink for MTBE and TBA delivered to surface water bodies by contaminated groundwater or by other sources.Microorganisms indigenous to the stream-bed sediments at two gasoline-contaminated groundwater sites demonstrated significant mineralization of the fuel oxygenates, methyl tert-butyl ether (MTBE) and tert-butyl alcohol (TBA). Up to 73% of [U-14C]-MTBE and 84% of [U-14C]-TBA were degraded to 14CO2 under mixed aerobic/anaerobic conditions. No significant mineralization was observed under strictly anaerobic conditions. The results indicate that, under the mixed aerobic/anaerobic conditions characteristic of stream-bed sediments, microbial processes may provide a significant environmental sink for MTBE and TBA delivered to surface water bodies by contaminated groundwater or by other sources.

  1. Changes in SOM composition and stability to microbial degradation over time in response to wood chip ash fertilisation

    DEFF Research Database (Denmark)

    Hansen, Mette; Saarsalmi, Anna; Peltre, Clement

    2016-01-01

    Recirculation of nutrients from wood chip combustion by ash fertilisation of forest systems can be used to re-introduce nutrients that are otherwise lost, counteracting nutrient depletion due to whole tree harvesting. However, the effects of ash application on soil organic matter (SOM) composition......, turnover and stability are unknown. The aim of the study was to investigate how ash fertilisation of forest soils affects SOM composition and stability to microbial degradation over time. O-horizon and 0–5 cm mineral soil samples were collected from two coniferous forest sites, one in Finland and one...... spectroscopy (FTIR-PAS) analysis of bulk soil samples. Ash fertilisation of forest soils affected SOM composition in the O-horizon, but not in the top 5 cm of the mineral soil. The pH and biodegradability of SOM were increased in the O-horizon. The changes in SOM composition consisted of enrichment of Fe...

  2. Microbial degradation of pesticides in rapid sand filters for treatment of drinking water

    DEFF Research Database (Denmark)

    Hedegaard, Mathilde Jørgensen; Albrechtsen, Hans-Jørgen

    2014-01-01

    and the degradation compound p-nitrophenol was investigated in the rapid sand filters at Islevbro and Sjælsø waterworks plant I and II. Microcosms were set up with sand from rapid sand filters, water and an initial pesticide concentration of 0.03-0.38 μg/L. In all the investigated waterworks the concentration...

  3. Processes of microbial pesticide degradation in rapid sand filters for treatment of drinking water

    DEFF Research Database (Denmark)

    Hedegaard, Mathilde Jørgensen; Albrechtsen, Hans-Jørgen

    . Investigations of the removal kinetics of bentazone at Sjælsø waterworks Plant II revealed that more than 50% of bentazone was removed within 30 minutes (initial concentrations 0.1-2.4 μg/L). Ammonium and methane is oxidized by bacteria in rapid sand filters, and these are known to degrade xenobiotics...

  4. Adsorption, Persistence and Degradation of Pesticides in Brazilian Soils. Influence of Organic Matter and Microbial Activity

    International Nuclear Information System (INIS)

    Influence of repeated applications of parathion on a humic gley soil was studied. Results showed an increased rate of formation of 14CO2 indicating a more rapid breakdown of parathion after one, five and eleven months storage. The enhanced degradation was shown to occur as a function of the period of incubation, independent of the parathion treatments

  5. Does microbial cm-scale heterogeneity impact pesticide degradation in and leaching from loamy agricultural soils?

    DEFF Research Database (Denmark)

    Rosenbom, Annette Elisabeth; Binning, Philip John; Aamand, Jens;

    2014-01-01

    The potential for pesticide degradation varies greatly at the cm-scale in agricultural soil. Three dimensional numerical simulations were conducted to evaluate how such small-scale spatial heterogeneity may affect the leaching of the biodegradable pesticide 2-methyl-4-chlorophenoxyacetic acid (MC...

  6. Microbial degradation pathways of the herbicide dichlobenil in soils with different history of dichlobenil-exposure

    International Nuclear Information System (INIS)

    This is the first detailed study of metabolite production during degradation of the herbicide 2,6-dichlorobenzonitrile (dichlobenil). Degradation of dichlobenil and three potential metabolites: 2,6-dichlorobenzamide (BAM), 2,6-dichlorobenzoic acid (2,6-DCBA) and ortho-chlorobenzamide (OBAM) was studied in soils either previously exposed or not exposed to dichlobenil using a newly developed HPLC method. Dichlobenil was degraded in all four soils; BAM and 2,6-DCBA were only degraded in soils previously exposed to dichlobenil (100% within 35-56 days and 85-100% in 56 days, respectively), and OBAM in all four soils (25-33% removal in 48 days). BAM produced from dichlobenil was either hydrolyzed to 2,6-DCBA or dechlorinated to OBAM, which was further hydrolyzed to ortho-chlorobenzoic acid. BAM was rapidly mineralized in previously exposed soils only. All potential metabolites and the finding that BAM was a dead-end metabolite of dichlobenil in soils not previously exposed to dichlobenil needs to be included in risk assessments of the use of dichlobenil. - BAM produced from dichlobenil was either hydrolyzed to 2,6-DCBA or dechlorinated to OBAM, which was further hydrolyzed to ortho-chlorobenzoic acid

  7. Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?

    Science.gov (United States)

    Scoma, Alberto; Barbato, Marta; Hernandez-Sanabria, Emma; Mapelli, Francesca; Daffonchio, Daniele; Borin, Sara; Boon, Nico

    2016-01-01

    Oil spills represent an overwhelming carbon input to the marine environment that immediately impacts the sea surface ecosystem. Microbial communities degrading the oil fraction that eventually sinks to the seafloor must also deal with hydrostatic pressure, which linearly increases with depth. Piezosensitive hydrocarbonoclastic bacteria are ideal candidates to elucidate impaired pathways following oil spills at low depth. In the present paper, we tested two strains of the ubiquitous Alcanivorax genus, namely A. jadensis KS_339 and A. dieselolei KS_293, which is known to rapidly grow after oil spills. Strains were subjected to atmospheric and mild pressure (0.1, 5 and 10 MPa, corresponding to a depth of 0, 500 and 1000 m, respectively) providing n-dodecane as sole carbon source. Pressures equal to 5 and 10 MPa significantly lowered growth yields of both strains. However, in strain KS_293 grown at 10 MPa CO2 production per cell was not affected, cell integrity was preserved and PO4(3-) uptake increased. Analysis of its transcriptome revealed that 95% of its genes were downregulated. Increased transcription involved protein synthesis, energy generation and respiration pathways. Interplay between these factors may play a key role in shaping the structure of microbial communities developed after oil spills at low depth and limit their bioremediation potential. PMID:27020120

  8. Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?

    Science.gov (United States)

    Scoma, Alberto; Barbato, Marta; Hernandez-Sanabria, Emma; Mapelli, Francesca; Daffonchio, Daniele; Borin, Sara; Boon, Nico

    2016-03-01

    Oil spills represent an overwhelming carbon input to the marine environment that immediately impacts the sea surface ecosystem. Microbial communities degrading the oil fraction that eventually sinks to the seafloor must also deal with hydrostatic pressure, which linearly increases with depth. Piezosensitive hydrocarbonoclastic bacteria are ideal candidates to elucidate impaired pathways following oil spills at low depth. In the present paper, we tested two strains of the ubiquitous Alcanivorax genus, namely A. jadensis KS_339 and A. dieselolei KS_293, which is known to rapidly grow after oil spills. Strains were subjected to atmospheric and mild pressure (0.1, 5 and 10 MPa, corresponding to a depth of 0, 500 and 1000 m, respectively) providing n-dodecane as sole carbon source. Pressures equal to 5 and 10 MPa significantly lowered growth yields of both strains. However, in strain KS_293 grown at 10 MPa CO2 production per cell was not affected, cell integrity was preserved and PO43‑ uptake increased. Analysis of its transcriptome revealed that 95% of its genes were downregulated. Increased transcription involved protein synthesis, energy generation and respiration pathways. Interplay between these factors may play a key role in shaping the structure of microbial communities developed after oil spills at low depth and limit their bioremediation potential.

  9. Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?

    KAUST Repository

    Scoma, Alberto

    2016-03-29

    Oil spills represent an overwhelming carbon input to the marine environment that immediately impacts the sea surface ecosystem. Microbial communities degrading the oil fraction that eventually sinks to the seafloor must also deal with hydrostatic pressure, which linearly increases with depth. Piezosensitive hydrocarbonoclastic bacteria are ideal candidates to elucidate impaired pathways following oil spills at low depth. In the present paper, we tested two strains of the ubiquitous Alcanivorax genus, namely A. jadensis KS_339 and A. dieselolei KS_293, which is known to rapidly grow after oil spills. Strains were subjected to atmospheric and mild pressure (0.1, 5 and 10 MPa, corresponding to a depth of 0, 500 and 1000 m, respectively) providing n-dodecane as sole carbon source. Pressures equal to 5 and 10 MPa significantly lowered growth yields of both strains. However, in strain KS_293 grown at 10 MPa CO2 production per cell was not affected, cell integrity was preserved and PO43− uptake increased. Analysis of its transcriptome revealed that 95% of its genes were downregulated. Increased transcription involved protein synthesis, energy generation and respiration pathways. Interplay between these factors may play a key role in shaping the structure of microbial communities developed after oil spills at low depth and limit their bioremediation potential.

  10. Metagenome reveals potential microbial degradation of hydrocarbon coupled with sulfate reduction in an oil-immersed chimney from Guaymas Basin

    Directory of Open Access Journals (Sweden)

    Ying eHe

    2013-06-01

    Full Text Available Deep-sea hydrothermal vent chimneys contain a high diversity of microorganisms, yet the metabolic activity and the ecological functions of the microbial communities remain largely unexplored. In this study, a metagenomic approach was applied to characterize the metabolic potential in a Guaymas hydrothermal vent chimney and to conduct comparative genomic analysis among a variety of environments with sequenced metagenomes. Complete clustering of functional gene categories with a comparative metagenomic approach showed that this Guaymas chimney metagenome was clustered most closely with a chimney metagenome from Juan de Fuca. All chimney samples were enriched with genes involved in recombination and repair, chemotaxis and flagellar assembly, highlighting their roles in coping with the fluctuating extreme deep-sea environments. A high proportion of transposases was observed in all the metagenomes from deep-sea chimneys, supporting the previous hypothesis that horizontal gene transfer may be common in the deep-sea vent chimney biosphere. In the Guaymas chimney metagenome, thermophilic sulfate reducing microorganisms including bacteria and archaea were found predominant, and genes coding for the degradation of refractory organic compounds such as cellulose, lipid, pullullan, as well as a few hydrocarbons including toluene, ethylbenzene and o-xylene were identified. Therefore, this oil-immersed chimney supported a thermophilic microbial community capable of oxidizing a range of hydrocarbons that served as electron donors for sulphate reduction under anaerobic conditions.

  11. New concepts of microbial treatment processes for the nitrogen removal: effect of protein and amino acids degradation.

    Science.gov (United States)

    González-Martínez, Alejandro; Calderón, Kadiya; González-López, Jesús

    2016-05-01

    High concentrations of proteins and amino acids can be found in wastewater and wastewater stream produced in anaerobic digesters, having shown that amino acids could persist over different managements for nitrogen removal affecting the nitrogen removal processes. Nitrogen removal is completely necessary because of their implications and the significant adverse environmental impact of ammonium such as eutrophication and toxicity to aquatic life on the receiving bodies. In the last decade, the treatment of effluents with high ammonium concentration through anammox-based bioprocesses has been enhanced because these biotechnologies are cheaper and more environmentally friendly than conventional technologies. However, it has been shown that the presence of important amounts of proteins and amino acids in the effluents seriously affects the microbial autotrophic consortia leading to important losses in terms of ammonium oxidation efficiency. Particularly the presence of sulfur amino acids such as methionine and cysteine has been reported to drastically decrease the autotrophic denitrification processes as well as affect the microbial community structure promoting the decline of ammonium oxidizing bacteria in favor of other phylotypes. In this context we discuss that new biotechnological processes that improve the degradation of protein and amino acids must be considered as a priority to increase the performance of the autotrophic denitrification biotechnologies.

  12. 多环芳烃的微生物降解机制研究进展%Research Progress on Microbial Degradation Mechanisms for Polycyclic Aromatic Hydrocarbons

    Institute of Scientific and Technical Information of China (English)

    王涛; 蓝慧; 田云; 卢向阳

    2016-01-01

    多环芳烃是环境中最常见且最难降解的有机污染物之一。通过微生物降解使环境中的多环芳烃低毒化或无毒化是当今环境修复的研究热点之一。以萘和菲为研究对象,论述了多环芳烃的微生物降解机制,并阐述了生命组学新技术在多环芳烃降解机制研究中的应用,为深入探讨多环芳烃的微生物降解及转化机制奠定了理论基础。%Polycyclic aromatic hydrocarbons(PAHs)are one of the common and the most refractory organic pollutants in the environment.Nowadays,low-toxicity or non-toxicity of PAHs by microbial degradation is one of the research highlights in the field of environmental remediation.In this paper,using naphthalene and phe-nanthrene as example,the microbial degradation mechanisms of PAHs are reviewed,and the application of“omics”technology in life science for research of microbial degradation of PAHs is summarized.The review lays a certain theoretical foundation for further exploring the microbial degradation and conversion mechanism for PAHs.

  13. Aspirated pits in wetwood and micromorphology of microbial degradation in subalpine fir

    Institute of Scientific and Technical Information of China (English)

    ZHANG Yaoli; CAI Liping; XU Yongji

    2006-01-01

    Differentiating from normal wood,pit membranes in wetwood of subalpine fir contain bacteria of water drop shape or orbicular shape,and flaky shape,as observed using Scanning Electronic Microscope.Not only are ray parenchyma cells in wetwood partially degraded but also margo strands in pit membranes are somewhat degraded by bacterial activities.Most of the bordered-pit membranes in normal wood are unaspirated in green conditions and the proportions of aspirated pits in earlywood and latewood account for only 6.8% and 13.4%,respectively.Nevertheless,most of the bordered-pit membranes in wetwood are aspirated in green conditions and the proportions of aspirated pits account for 77.7% and 72.1%,respectively.The problem of hard-to-dry for subalpine fir could be reasoned from the considerable amount of aspirated pit membranes in wetwood.

  14. Communal action of microbial cultures for Red HE3B degradation.

    Science.gov (United States)

    Patil, P S; Phugare, S S; Jadhav, S B; Jadhav, J P

    2010-09-15

    The consortium PMB11 consisting of three bacterial species, originally isolated from dye contaminated soil was identified as Bacillus odysseyi SUK3, Morganella morganii SUK5 and Proteus sp. SUK7. The consortium possessed the ability to decolorize various textile dyes as well as mixtures of dyes. PMB11 could decolorize Red HE3B (50 mg l(-1)) with 99% of decolorization within 12 h in nutrient broth, while in mineral medium it could decolorize up to 97% within 24h. Induction in the activities of various oxidative and reductive enzymes indicates the involvement of these enzymes in decolorization. Biodegradation of the dye was monitored using UV-vis spectroscopy, HPLC and FTIR analysis. The Red HE3B degradation pathway was proposed by GC-MS analysis. Various metabolites formed after the degradation were identified as 2,5-diaminobenzene 6-aminotriazine, aniline 2-sulfate, aniline 3-sulfate, 2-amino 5-chlorotriazine and naphthalene. Phytotoxicity studies revealed that metabolites formed after degradation were significantly less toxic in nature.

  15. Selection and screening of microbial consortia for efficient and ecofriendly degradation of plastic garbage collected from urban and rural areas of Bangalore, India.

    Science.gov (United States)

    Skariyachan, Sinosh; Megha, M; Kini, Meghna Niranjan; Mukund, Kamath Manali; Rizvi, Alya; Vasist, Kiran

    2015-01-01

    Industrialization and urbanization have led to massive accumulation of plastic garbage all over India. The persistence of plastic in soil and aquatic environment has become ecological threat to the metropolitan city such as Bangalore, India. Present study investigates an ecofriendly, efficient and cost-effective approach for plastic waste management by the screening of novel microbial consortia which are capable of degrading plastic polymers. Plastic-contaminated soil and water samples were collected from six hot spots of urban and rural areas of Bangalore. The plastic-degrading bacteria were enriched, and degradation ability was determined by zone of clearance method. The percentage of polymer degradation was initially monitored by weight loss method, and the main isolates were characterized by standard microbiology protocols. These isolates were used to form microbial consortia, and the degradation efficiency of the consortia was compared with individual isolate and known strains obtained from the Microbial Type Culture Collection (MTCC) and Gene Bank, India. One of the main enzymes responsible for polymer degradation was identified, and the biodegradation mechanism was hypothesized by bioinformatics studies. From this study, it is evident that the bacteria utilized the plastic polymer as a sole source of carbon and showed 20-50% weight reduction over a period of 120 days. The two main bacteria responsible for the degradation were microbiologically characterized to be Pseudomonas spp. These bacteria could grow optimally at 37 °C in pH 9.0 and showed 35-40% of plastic weight reduction over 120 days. These isolates were showed better degradation ability than known strains from MTCC. The current study further revealed that the microbial consortia formulated by combining Psuedomonas spp. showed 40 plastic weight reduction over a period of 90 days. Further, extracellular lipase, one of the main enzymes responsible for polymer degradation, was identified. The

  16. Microbial diversity and anaerobic hydrocarbon degradation potential in an oil-contaminated mangrove sediment

    Directory of Open Access Journals (Sweden)

    Andrade Luiza L

    2012-08-01

    Full Text Available Abstract Background Mangrove forests are coastal wetlands that provide vital ecosystem services and serve as barriers against natural disasters like tsunamis, hurricanes and tropical storms. Mangroves harbour a large diversity of organisms, including microorganisms with important roles in nutrient cycling and availability. Due to tidal influence, mangroves are sites where crude oil from spills farther away can accumulate. The relationship between mangrove bacterial diversity and oil degradation in mangrove sediments remains poorly understood. Results Mangrove sediment was sampled from 0–5, 15–20 and 35–40 cm depth intervals from the Suruí River mangrove (Rio de Janeiro, Brazil, which has a history of oil contamination. DGGE fingerprinting for bamA, dsr and 16S rRNA encoding fragment genes, and qPCR analysis using dsr and 16S rRNA gene fragment revealed differences with sediment depth. Conclusions Analysis of bacterial 16S rRNA gene diversity revealed changes with depth. DGGE for bamA and dsr genes shows that the anaerobic hydrocarbon-degrading community profile also changed between 5 and 15 cm depth, and is similar in the two deeper sediments, indicating that below 15 cm the anaerobic hydrocarbon-degrading community appears to be well established and homogeneous in this mangrove sediment. qPCR analysis revealed differences with sediment depth, with general bacterial abundance in the top layer (0–5 cm being greater than in both deeper sediment layers (15–20 and 35–40 cm, which were similar to each other.

  17. Degradation of microbial fluorescence biosignatures by solar ultraviolet radiation on Mars

    Science.gov (United States)

    Dartnell, Lewis R.; Patel, Manish R.

    2014-04-01

    Recent and proposed robotic missions to Mars are equipped with implements to expose or excavate fresh material from beneath the immediate surface. Once brought into the open, any organic molecules or potential biosignatures of present or past life will be exposed to the unfiltered solar ultraviolet (UV) radiation and face photolytic degradation over short time courses. The key question, then, is what is the window of opportunity for detection of recently exposed samples during robotic operations? Detection of autofluorescence has been proposed as a simple method for surveying or triaging samples for organic molecules. Using a Mars simulation chamber we conduct UV exposures on thin frozen layers of two model microorganisms, the radiation-resistant polyextremophile Deinococcus radiodurans and the cyanobacterium Synechocystis sp. PCC 6803. Excitation-emission matrices (EEMs) are generated of the full fluorescence response to quantify the change in signal of different cellular fluorophores over Martian equivalent time. Fluorescence of Deinococcus cells, protected by a high concentration of carotenoid pigments, was found to be relatively stable over 32 h of Martian UV irradiation, with around 90% of the initial signal remaining. By comparison, fluorescence from protein-bound tryptophan in Synechocystis is much more sensitive to UV photodegradation, declining to 50% after 64 h exposure. The signal most readily degraded by UV irradiation is fluorescence of the photosynthetic pigments - diminished to only 35% after 64 h. This sensitivity may be expected as the biological function of chlorophyll and phycocyanin is to optimize the harvesting of light energy and so they are readily photobleached. A significant increase in a ~450 nm emission feature is interpreted as accumulation of fluorescent cellular degradation products from photolysis. Accounting for diurnal variation in Martian sunlight, this study calculates that frozen cellular biosignatures would remain detectable by

  18. Morphological observation and microbial population dynamics in anaerobic polyurethane foam biofilm degrading gelatin

    Directory of Open Access Journals (Sweden)

    Tommaso G.

    2002-01-01

    Full Text Available This work reports on a preliminary study of anaerobic degradation of gelatin with emphasis on the development of the proteolytic biofilm in polyurethane foam matrices in differential reactors. The evolution of the biofilm was observed during 22 days by optical and scanning electron microscopy (SEM analyses. Three distinct immobilization patterns could be observed in the polyurethane foam: cell aggregates entrapped in matrix pores, thin biofilms attached to inner polyurethane foam surfaces and individual cells that have adhered to the support. Rods, cocci and vibrios were observed as the predominant morphologies of bacterial cells. Methane was produced mainly by hydrogenothrophic reactions during the operation of the reactors.

  19. Aerobic granulation strategy for bioaugmentation of a sequencing batch reactor (SBR) treating high strength pyridine wastewater

    International Nuclear Information System (INIS)

    Abstract: Aerobic granules were successfully cultivated in a sequencing batch reactor (SBR), using a single bacterial strain Rhizobium sp. NJUST18 as the inoculum. NJUST18 presented as both a good pyridine degrader and an efficient autoaggregator. Stable granules with diameter of 0.5–1 mm, sludge volume index of 25.6 ± 3.6 mL g−1 and settling velocity of 37.2 ± 2.7 m h−1, were formed in SBR following 120-day cultivation. These granules exhibited excellent pyridine degradation performance, with maximum volumetric degradation rate (Vmax) varied between 1164.5 mg L−1 h−1 and 1867.4 mg L−1 h−1. High-throughput sequencing analysis exhibited a large shift in microbial community structure, since the SBR was operated under open condition. Paracoccus and Comamonas were found to be the most predominant species in the aerobic granule system after the system had stabilized. The initially inoculated Rhizobium sp. lost its dominance during aerobic granulation. However, the inoculation of Rhizobium sp. played a key role in the start-up process of this bioaugmentation system. This study demonstrated that, in addition to the hydraulic selection pressure during settling and effluent discharge, the selection of aggregating bacterial inocula is equally important for the formation of the aerobic granule

  20. Aerobic granulation strategy for bioaugmentation of a sequencing batch reactor (SBR) treating high strength pyridine wastewater

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Xiaodong; Chen, Yan [Jiangsu Key Laboratory for Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing 210094, Jiangsu Province (China); Zhang, Xin [Jiangsu Key Laboratory for Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing 210094, Jiangsu Province (China); Suzhou Institute of Architectural Design Co., Ltd, Suzhou 215021, Jiangsu Province (China); Jiang, Xinbai; Wu, Shijing [Jiangsu Key Laboratory for Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing 210094, Jiangsu Province (China); Shen, Jinyou, E-mail: shenjinyou@mail.njust.edu.cn [Jiangsu Key Laboratory for Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing 210094, Jiangsu Province (China); Sun, Xiuyun; Li, Jiansheng; Lu, Lude [Jiangsu Key Laboratory for Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing 210094, Jiangsu Province (China); Wang, Lianjun, E-mail: wanglj@mail.njust.edu.cn [Jiangsu Key Laboratory for Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing 210094, Jiangsu Province (China)

    2015-09-15

    Abstract: Aerobic granules were successfully cultivated in a sequencing batch reactor (SBR), using a single bacterial strain Rhizobium sp. NJUST18 as the inoculum. NJUST18 presented as both a good pyridine degrader and an efficient autoaggregator. Stable granules with diameter of 0.5–1 mm, sludge volume index of 25.6 ± 3.6 mL g{sup −1} and settling velocity of 37.2 ± 2.7 m h{sup −1}, were formed in SBR following 120-day cultivation. These granules exhibited excellent pyridine degradation performance, with maximum volumetric degradation rate (V{sub max}) varied between 1164.5 mg L{sup −1} h{sup −1} and 1867.4 mg L{sup −1} h{sup −1}. High-throughput sequencing analysis exhibited a large shift in microbial community structure, since the SBR was operated under open condition. Paracoccus and Comamonas were found to be the most predominant species in the aerobic granule system after the system had stabilized. The initially inoculated Rhizobium sp. lost its dominance during aerobic granulation. However, the inoculation of Rhizobium sp. played a key role in the start-up process of this bioaugmentation system. This study demonstrated that, in addition to the hydraulic selection pressure during settling and effluent discharge, the selection of aggregating bacterial inocula is equally important for the formation of the aerobic granule.

  1. Cometabolic degradation of lincomycin in a Sequencing Batch Biofilm Reactor (SBBR) and its microbial community.

    Science.gov (United States)

    Li, Yancheng; Zhou, Jian; Gong, Benzhou; Wang, Yingmu; He, Qiang

    2016-08-01

    Cometabolism technology was employed to degrade lincomycin wastewater in Sequencing Batch Biofilm Reactor (SBBR). In contrast with the control group, the average removal rate of lincomycin increased by 56.0% and Total Organic Carbon (TOC) increased by 52.5% in the cometabolic system with glucose as growth substrate. Under the same condition, Oxidation-Reduction Potential (ORP) was 85.1±7.3mV in cometabolic system and 198.2±8.4mV in the control group, indicating that glucose changed the bulk ORP and created an appropriate growing environment for function bacteria. Functional groups of lincomycin were effectively degraded in cometabolic system proved by FTIR and GC-MS. Meanwhile, results of DGGE and 16S rDNA showed great difference in dominant populations between cometabolic system and the control group. In cometabolic system, Roseovarius (3.35%), Thiothrix (2.74%), Halomonas (2.49%), Ignavibacterium (2.02%), and TM7_genus_incertae_sedis (1.93%) were verified as dominant populations at genus level. Cometabolism may be synergistically caused by different functional dominant bacteria. PMID:27183234

  2. Microbial degradation of the lamprey larvicide 3-trifluoromethyl-4-nitrophenol in sediment-water systems

    Science.gov (United States)

    Kempe, Lloyd L.

    1973-01-01

    The selective lampricide 3-trifluoromethyl-4-nitrophenol (TFM), maintained in the water at concentrations of 1 to 6 I?g/ml for several hours, kills larval sea lampreys (Petromyzon marinus) in tributaries of the Great Lakes. Because the fate of TFM in the environment is a matter of concern, the interactions of this chemical with river and lake sediments were studied in laboratory experiments. In mixtures of TFM, water, and sediment held in aquariums, the TFM decreased progressively and nearly or completely disappeared in 1 to 4 weeks; concentrations of the fluoride ion increased; and the systems became nontoxic for sea lamprey larvae and goldfish (Carassius auratus). If the reduction in TFM ceased before all of the chemical had disappeared, the process resumed when nutrient broth was added. Loss of TFM from the systems was prevented by the addition of an antiseptic (phenol) and by heat sterilization. Enrichment cultures of microorganisms isolated from stream and lake sediments degraded TFM in nutrient broths. I conclude that TFM is degraded by microorganisms that live in sediment-water systems.

  3. Degradation of chlorpyrifos alone and in combination with chlorothalonil and their effects on soil microbial populations

    Institute of Scientific and Technical Information of China (English)

    CHU Xiaoqiang; FANG Hua; PAN Xuedong; WANG Xiao; SHAN Min; FENG Bo; YU Yunlong

    2008-01-01

    In practice, pesticides are usually applied simultaneously or one after another for crop protection, and this type of pesticide application often leads to a combined contamination of pesticide residues in the soil environment. A laboratory study was conducted to investigate the influence of chlorothalonil on chlorpyrifos degradation and its effects on soil bacterial, fungal, and actinomycete populations. Under the experimental conditions here, the half-lives of chlorpyrifos alone, and in combination with chlorothalonil, at the recommended and double dosages, were measured to be 3.24, 2.77, and 2.63 d, respectively. Chlorpyrifos degradation was not significantly altered by its combination with chlorothalonil. However, the inhibitory effect of chlorpyrifos on soil microorganisms was increased by its combination with chlorothalonil, and the increase was related to the levels of chlorothalonil added. Compared to those in the controls, the populations of bacteria, fungi, and actinomycetes were significantly reduced by 44.1%, 61.1%, and 72.8%, respectively, on the first day after treatment (DAT) by chlorpyrifos alone. With the addition of chlorothalonil, the inhibition was increased to 55.2%, 79.3%, and 85.8% at the recommended dosage, and 86.0%, 94.1%, and 90.8% at the double dosage, at one DAT, respectively. The results suggested that combined effects should be taken into account to assess the actual impacts of pesticide applications.

  4. Optimization for Microbial Degradation of Dibenzothiophene by Pseudomonas sp. LKY-5 Using Response Surface Methodology

    Institute of Scientific and Technical Information of China (English)

    Li Lin; Zhao Chaocheng; Liu Qiyou; Zhang Yunbo; Liu Chunshuang; Xue Jianliang

    2014-01-01

    In this research, the degradation of dibenzothiophene (DBT) was investigated by using Pseudomonas sp. LKY-5 isolated from oil contaminated soil. The response surface methodology (RSM) based on the Box-Behnken design (BBD) was applied for evaluating the interactive effects of four independent variables including substrate concentration, tempera-ture, pH and agitation rate on the DBT removal response. A total of 29 experiments for four factors at three levels were conducted in present study. A second-order regression model was then developed, and the analysis of variance (ANOVA) illustrated that the proposed quadratic model could be utilized to navigate the design space. The value of determination coefif-cient (R2=0.953 4) indicated a satisfactory agreement between the quadratic model and the experimental data. It was found that DBT removal was more signiifcantly affected (P<0.000 1) by substrate concentration compared with other three parameters. An 100%degradation of DBT could be obtained by Pseudomonas sp. LKY-5 at a substrate concentration of 100 mg/L.

  5. Aminopeptidase activity by spoilage bacteria and its relationship to microbial load and sensory attributes of poultry legs during aerobic cold storage.

    Science.gov (United States)

    Guevara-Franco, José Alfredo; Alonso-Calleja, Carlos; Capita, Rosa

    2010-02-01

    The shelf life of poultry legs stored aerobically and the possible role of the aminopeptidase activity of gram-negative bacteria (p-nitroaniline test) as a predictor of poultry spoilage were evaluated on the basis of microbiological and sensory parameters. Chicken legs (n = 30) obtained immediately after evisceration in a local poultry processing plant were kept under aerobic refrigeration (4 +/- 1 degrees C) for 7 days. Microbiological (counts of aerobic bacteria and psychrotrophs) and sensory (odor, color, and general acceptability on a hedonic scale of 1 to 9) parameters and aminopeptidase activity (absorbance at 390 nm [A(390)]) determinations were performed after 0, 1, 3, 5, and 7 days of storage. Aerobic plate counts of 7 log CFU/g and a score of 6 for general acceptability were used as indicators of the end point of shelf life. Strong correlations (r > or = 0.76; P counts, hedonic scores, and A(390) values. Samples were judged as unacceptable (shelf-life end point) after 2 and 4 days on the basis of sensory and microbiological analyses, respectively. A(390) values of 0.52 and 0.89 (corresponding to p-nitroaniline concentrations of 6.25 and 10.7 microg/ml, respectively) are proposed as the upper limits for acceptability on the basis of sensory and microbiological determinations, respectively. However, these recommendations are based on a small set of samples, and their general application is yet to be verified.

  6. Aerobic biodegradation of organic compounds in hydraulic fracturing fluids.

    Science.gov (United States)

    Kekacs, Daniel; Drollette, Brian D; Brooker, Michael; Plata, Desiree L; Mouser, Paula J

    2015-07-01

    Little is known of the attenuation of chemical mixtures created for hydraulic fracturing within the natural environment. A synthetic hydraulic fracturing fluid was developed from disclosed industry formulas and produced for laboratory experiments using commercial additives in use by Marcellus shale field crews. The experiments employed an internationally accepted standard method (OECD 301A) to evaluate aerobic biodegradation potential of the fluid mixture by monitoring the removal of dissolved organic carbon (DOC) from an aqueous solution by activated sludge and lake water microbial consortia for two substrate concentrations and four salinities. Microbial degradation removed from 57 % to more than 90 % of added DOC within 6.5 days, with higher removal efficiency at more dilute concentrations and little difference in overall removal extent between sludge and lake microbe treatments. The alcohols isopropanol and octanol were degraded to levels below detection limits while the solvent acetone accumulated in biological treatments through time. Salinity concentrations of 40 g/L or more completely inhibited degradation during the first 6.5 days of incubation with the synthetic hydraulic fracturing fluid even though communities were pre-acclimated to salt. Initially diverse microbial communities became dominated by 16S rRNA sequences affiliated with Pseudomonas and other Pseudomonadaceae after incubation with the synthetic fracturing fluid, taxa which may be involved in acetone production. These data expand our understanding of constraints on the biodegradation potential of organic compounds in hydraulic fracturing fluids under aerobic conditions in the event that they are accidentally released to surface waters and shallow soils. PMID:26037076

  7. Degradation of atrazine by microbial consortium in an anaerobic submerged biological filter.

    Science.gov (United States)

    Nasseri, Simin; Baghapour, Mohammad Ali; Derakhshan, Zahra; Faramarzian, Mohammad

    2014-09-01

    Atrazine (2-chloro-4-ethylamino-6-isopropylamino-1,3,5-triazine) (ATZ) is one of the components of S-triazine. Due to its certain characteristics, ATZ causes pollution in various ecosystems and has been of concern for its probable carcinogenic effects on humans. Researchers have used chemical and physical methods for removing ATZ from the environment. Although these methods are quick, they have not been capable of complete mineralization. Therefore, researchers are looking for methods with lower energy consumption and cost and higher efficiency. In this study, biodegradation of ATZ by microbial consortium was evaluated in the aquatic environment. The present study aimed to evaluate the efficiency of ATZ removal from aqueous environments by using an anaerobic submerged biological filter in four concentration levels of atrazine and three hydraulic retention times. The maximum efficiencies of ATZ and soluble chemical oxygen demand (SCOD) were 51.1 and 45.6%, respectively. There was no accumulation of ATZ in the biofilm and the loss of ATZ in the control reactor was negligible. This shows that ATZ removal in this system was due to biodegradation. Furthermore, the results of modeling showed that the Stover-Kincannon model had desirable fitness (R² > 99%) in loading ATZ in this biofilter.

  8. Examination of protein degradation in continuous flow, microbial electrolysis cells treating fermentation wastewater

    KAUST Repository

    Nam, Joo-Youn

    2014-11-01

    © 2014 Elsevier Ltd. Cellulose fermentation wastewaters (FWWs) contain short chain volatile fatty acids and alcohols, but they also have high concentrations of proteins. Hydrogen gas production from FWW was examined using continuous flow microbial electrolysis cells (MECs), with a focus on fate of the protein. H2 production rates were 0.49±0.05m3/m3-d for the FWW, compared to 0.63±0.02m3/m3-d using a synthetic wastewater containing only acetate (applied potential of 0.9V). Total organic matter removal was 76±6% for the FWW, compared to 87±5% for acetate. The MEC effluent became relatively enriched in protein (69%) compared to that in the original FWW (19%). Protein was completely removed using higher applied voltages (1.0 or 1.2V), but current generation was erratic due to more positive anode potentials (-113±38mV, Eap=1.2V; -338±38mV, 1.0V; -0.426±4mV, 0.9V). Bacteria on the anodes with FWW were primarily Deltaproteobacteria, while Archaea were predominantly Methanobacterium.

  9. Effect of steam explosion and microbial fermentation on cellulose and lignin degradation of corn stover.

    Science.gov (United States)

    Chang, Juan; Cheng, Wei; Yin, Qingqiang; Zuo, Ruiyu; Song, Andong; Zheng, Qiuhong; Wang, Ping; Wang, Xiao; Liu, Junxi

    2012-01-01

    In order to increase nutrient values of corn stover, effects of steam explosion (2.5 MPa, 200 s) and Aspergillus oryzae (A. oryzae) fermentation on cellulose and lignin degradation were studied. The results showed the contents of cellulose, hemicellulose and lignin in the exploded corn stover were 8.47%, 50.45% and 36.65% lower than that in the untreated one, respectively (Pcorn stover (EFCS) were decreased by 24.36% and 69.90%, compared with the untreated one (Pcorn stover. The activities of enzymes in EFCS were increased. The metabolic experiment showed that about 8% EFCS could be used to replace corn meal in broiler diets, which made EFCS become animal feedstuff possible.

  10. Deep Sequencing of Myxilla (Ectyomyxilla) methanophila, an Epibiotic Sponge on Cold-Seep Tubeworms, Reveals Methylotrophic, Thiotrophic, and Putative Hydrocarbon-Degrading Microbial Associations

    KAUST Repository

    Arellano, Shawn M.

    2012-10-11

    The encrusting sponge Myxilla (Ectyomyxilla) methanophila (Poecilosclerida: Myxillidae) is an epibiont on vestimentiferan tubeworms at hydrocarbon seeps on the upper Louisiana slope of the Gulf of Mexico. It has long been suggested that this sponge harbors methylotrophic bacteria due to its low δ13C value and high methanol dehydrogenase activity, yet the full community of microbial associations in M. methanophila remained uncharacterized. In this study, we sequenced 16S rRNA genes representing the microbial community in M. methanophila collected from two hydrocarbon-seep sites (GC234 and Bush Hill) using both Sanger sequencing and next-generation 454 pyrosequencing technologies. Additionally, we compared the microbial community in M. methanophila to that of the biofilm collected from the associated tubeworm. Our results revealed that the microbial diversity in the sponges from both sites was low but the community structure was largely similar, showing a high proportion of methylotrophic bacteria of the genus Methylohalomonas and polycyclic aromatic hydrocarbon (PAH)-degrading bacteria of the genera Cycloclasticus and Neptunomonas. Furthermore, the sponge microbial clone library revealed the dominance of thioautotrophic gammaproteobacterial symbionts in M. methanophila. In contrast, the biofilm communities on the tubeworms were more diverse and dominated by the chemoorganotrophic Moritella at GC234 and methylotrophic Methylomonas and Methylohalomonas at Bush Hill. Overall, our study provides evidence to support previous suggestion that M. methanophila harbors methylotrophic symbionts and also reveals the association of PAH-degrading and thioautotrophic microbes in the sponge. © 2012 Springer Science+Business Media New York.

  11. Microbial degradation of crude oil on the sea surface by adding nutrient microcapsules. Eiyo ennaiho microcapsule no tenka ni yoru kaimen deno genyu no biseibutsu bunkai

    Energy Technology Data Exchange (ETDEWEB)

    Yamane, Akiko; Okada, Mitsumasa; Murakami, Akihiko (Tokyo Univ. of Agriculture and Tech., Tokyo (Japan))

    1990-01-10

    Microbial degradation of spilled crude oil on the sea surface has been studied. It was found that the concentration of nutrient was a large rate-determining factor in microbial degradation of oil, consequently microbial degradation can be enhanced by adding nutrient. While, a nutrient microcapsule was developed so as to keep a certain concentration of nutrient on the sea surface, and the biodegradation capacity and the dosing condition were investigated through experiments. In the up-and-down shaking apparats modeled on sea surface, crude oils were degraded by a marine bacteria. The percentages of total oil removal were 18-22% in the sea water, on the other hand, by dose of the nutrient microcapsules they were enhanced to 43-56%. On the biodegradation of 5g of crude oil, the oil removal was amounted roughly to maximum when 116mg of the microcapsule per vessel (11.6% to crude oil) was added 5 times every 4 days, and the dosage effect was not increased even if more nutrient microcapsules were added. 9 refs., 7 figs.

  12. Performances and microbial features of an aerobic packed-bed biofilm reactor developed to post-treat an olive mill effluent from an anaerobic GAC reactor

    Directory of Open Access Journals (Sweden)

    Marchetti Leonardo

    2006-04-01

    Full Text Available Abstract Background Olive mill wastewater (OMW is the aqueous effluent of olive oil producing processes. Given its high COD and content of phenols, it has to be decontaminated before being discharged. Anaerobic digestion is one of the most promising treatment process for such an effluent, as it combines high decontamination efficiency with methane production. The large scale anaerobic digestion of OMWs is normally conducted in dispersed-growth reactors, where however are generally achieved unsatisfactory COD removal and methane production yields. The possibility of intensifying the performance of the process using a packed bed biofilm reactor, as anaerobic treatment alternative, was demonstrated. Even in this case, however, a post-treatment step is required to further reduce the COD. In this work, a biological post-treatment, consisting of an aerobic biological "Manville" silica bead-packed bed aerobic reactor, was developed, tested for its ability to complete COD removal from the anaerobic digestion effluents, and characterized biologically through molecular tools. Results The aerobic post-treatment was assessed through a 2 month-continuous feeding with the digested effluent at 50.42 and 2.04 gl-1day-1 of COD and phenol loading rates, respectively. It was found to be a stable process, able to remove 24 and 39% of such organic loads, respectively, and to account for 1/4 of the overall decontamination efficiency displayed by the anaerobic-aerobic integrated system when fed with an amended OMW at 31.74 and 1.70 gl-1day-1 of COD and phenol loading rates, respectively. Analysis of 16S rRNA gene sequences of biomass samples from the aerobic reactor biofilm revealed that it was colonized by Rhodobacterales, Bacteroidales, Pseudomonadales, Enterobacteriales, Rhodocyclales and genera incertae sedis TM7. Some taxons occurring in the influent were not detected in the biofilm, whereas others, such as Paracoccus, Pseudomonas, Acinetobacter and Enterobacter

  13. Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle.

    Directory of Open Access Journals (Sweden)

    Erin D Scully

    Full Text Available The Asian longhorned beetle (Anoplophoraglabripennis is an invasive, wood-boring pest that thrives in the heartwood of deciduous tree species. A large impediment faced by A. glabripennis as it feeds on woody tissue is lignin, a highly recalcitrant biopolymer that reduces access to sugars and other nutrients locked in cellulose and hemicellulose. We previously demonstrated that lignin, cellulose, and hemicellulose are actively deconstructed in the beetle gut and that the gut harbors an assemblage of microbes hypothesized to make significant contributions to these processes. While lignin degrading mechanisms have been well characterized in pure cultures of white rot basidiomycetes, little is known about such processes in microbial communities associated with wood-feeding insects. The goals of this study were to develop a taxonomic and functional profile of a gut community derived from an invasive population of larval A. glabripennis collected from infested host trees and to identify genes that could be relevant for the digestion of woody tissue and nutrient acquisition. To accomplish this goal, we taxonomically and functionally characterized the A. glabripennis midgut microbiota through amplicon and shotgun metagenome sequencing and conducted a large-scale comparison with the metagenomes from a variety of other herbivore-associated communities. This analysis distinguished the A. glabripennis larval gut metagenome from the gut communities of other herbivores, including previously sequenced termite hindgut metagenomes. Genes encoding enzymes were identified in the A. glabripennis gut metagenome that could have key roles in woody tissue digestion including candidate lignin degrading genes (laccases, dye-decolorizing peroxidases, novel peroxidases and β-etherases, 36 families of glycoside hydrolases (such as cellulases and xylanases, and genes that could facilitate nutrient recovery, essential nutrient synthesis, and detoxification. This community

  14. The effect of continuous Zn (II) exposure on the organic degradation capability and soluble microbial products (SMP) of activated sludge

    Energy Technology Data Exchange (ETDEWEB)

    Han, Jing-chao [Department of Environmental Science and Engineering, Fudan University, 220 Handan Road, Shanghai 200433 (China); Liu, Yan, E-mail: liuyan@fudan.edu.cn [Department of Environmental Science and Engineering, Fudan University, 220 Handan Road, Shanghai 200433 (China); Liu, Xiang, E-mail: liuxiang@fudan.edu.cn [Department of Environmental Science and Engineering, Fudan University, 220 Handan Road, Shanghai 200433 (China); Zhang, Yi; Yan, Yang-wei; Dai, Rui-hua; Zha, Xiao-song; Wang, Cheng-shan [Department of Environmental Science and Engineering, Fudan University, 220 Handan Road, Shanghai 200433 (China)

    2013-01-15

    Highlights: ► After acclimation, the activated sludge could endure 400 mg/L Zn (II). ► A close correlation was found between SMP content and effluent COD. ► The change in DNA might reflect the Zn (II) toxicity to the biomass. -- Abstract: This study describes the change of organic degradation capability and soluble microbial products (SMP) generated in activated sludge under continuous exposure to Zn (II) in a sequencing batch reactor (SBR). In 338 days of operation, the added Zn (II) concentrations were gradually increased from 50 to 100, 200, 400 to 600 and 800 mg/L. Results showed that after adaptation, the activated sludge could endure 400 mg/L Zn (II) without showing evident reduction in organic degradation ability (92 ± 1% of chemical oxygen demand (COD) removal in stable state). However, when 600 and 800 mg/L Zn (II) were applied, the effluent water quality significantly deteriorated. Meanwhile, under increasing Zn (II) concentrations, the SMP content in the activated sludge, together with its main biochemical constituents, first increased slightly below 400 mg/L of Zn (II), then rose sharply under 600 and 800 mg/L Zn (II). Furthermore, a close correlation was found between SMP content and effluent soluble COD in both the Experimental Reactor and Control Reactor. In addition, the Zn (II) concentrations in the effluent and SMP extraction liquid were further analyzed and discussed to reveal the role that SMP constituents played in defense and resistance to the toxicity of Zn (II)

  15. Effects of microbial processes on gas generation under expected WIPP repository conditions: Annual report through 1992

    International Nuclear Information System (INIS)

    Microbial processes involved in gas generation from degradation of the organic constituents of transuranic waste under conditions expected at the Waste Isolation Pilot Plant (WIPP) repository are being investigated at Brookhaven National Laboratory. These laboratory studies are part of the Sandia National Laboratories -- WIPP Gas Generation Program. Gas generation due to microbial degradation of representative cellulosic waste was investigated in short-term ( 6 months) experiments by incubating representative paper (filter paper, paper towels, and tissue) in WIPP brine under initially aerobic (air) and anaerobic (nitrogen) conditions. Samples from the WIPP surficial environment and underground workings harbor gas-producing halophilic microorganisms, the activities of which were studied in short-term experiments. The microorganisms metabolized a variety of organic compounds including cellulose under aerobic, anaerobic, and denitrifying conditions. In long-term experiments, the effects of added nutrients (trace amounts of ammonium nitrate, phosphate, and yeast extract), no nutrients, and nutrients plus excess nitrate on gas production from cellulose degradation

  16. Effect of dietary fat and residues on fecal loss of sterols and on their microbial degradation in cystic fibrosis.

    Science.gov (United States)

    Leroy, C; Lepage, G; Morin, C L; Bertrand, J M; Dufour-Larue, O; Roy, C C

    1986-09-01

    Although various etiologic factors have been implicated, the mechanism responsible for bile acid malabsorption in CF remains unknown. Eight CF children studied twice on a normal diet supplemented with pancreatic enzymes and once during a one-month period of Vivonex administered by continuous nasogastric infusion were compared to age-matched controls. On the fat and residue-free elemental diet, there was a modest decrease in steatorrhea and no change in the daily excretion of nitrogen and neutral sterols. However, normalization of bile acid output (485.6 +/- 65.0 to 160.6 +/- 29.2 mg/24 hr) to control levels (150.2 +/- 60.7) was noted. Diminished microbial degradation of both neutral and acidic sterols and a smaller amount of bile acids adsorbed to decreased residues were also found. The data do not support the possibility of a bile acid ileal transport defect and suggest that the most important single factor responsible for the intraluminal sequestration of bile acids in CF is dietary residues. Because of significant ongoing losses of nitrogen and lipids, pancreatic enzymes should be given to CF patients on elemental diets. PMID:3089744

  17. Aerobic landfill bioreactor

    Science.gov (United States)

    Hudgins, Mark P; Bessette, Bernard J; March, John; McComb, Scott T.

    2000-01-01

    The present invention includes a method of decomposing municipal solid waste (MSW) within a landfill by converting the landfill to aerobic degradation in the following manner: (1) injecting air via the landfill leachate collection system (2) injecting air via vertical air injection wells installed within the waste mass; (3) applying leachate to the waste mass using a pressurized drip irrigation system; (4) allowing landfill gases to vent; and (5) adjusting air injection and recirculated leachate to achieve a 40% to 60% moisture level and a temperature between 120.degree. F. and 140.degree. F. in steady state.

  18. Microbial analyses of cement and grouting additives

    Energy Technology Data Exchange (ETDEWEB)

    Hallbeck, L.; Jaegevall, S.; Paeaejaervi, A.; Rabe, L.; Edlund, J.; Eriksson, S. [Microbial Analytics Sweden AB, Moelnlycke (Sweden)

    2012-01-15

    During sampling in the ONKALO tunnel in 2006, heavy growth of a slimy material was observed in connection with grouting. It was suggested to be microbial growth on organic additives leaching from the grout. Two sampling campaigns resulted in the isolation of several aerobic bacterial strains. Some of these strains were used in biodegradation studies of three solid cement powders, eight liquid grout additives, and six plastic drainage materials. Degradation was also studied using ONKALO groundwaters as inoculums. The isolated strains were most closely related to hydrocarbon-degrading microorganisms. The biodegradation of seven of the products was tested using microorganisms isolated from the ONKALO slime in 2006; none of these strains could degrade the tested products. When ONKALO drillhole groundwaters were used as inoculums in the degradation studies, it was demonstrated that Structuro 111X, Mighty 150, and Super-Parmix supported growth of the groundwater microorganisms. Structuro 111X is a polycarboxylate condensate while Mighty 150 and Super-Parmix are condensates with formaldehyde and naphthalene. Some of the isolated microorganisms belonged to the genus Pseudomonas, many strains of which can degrade organic molecules. None of the plastic drainage materials supported growth during the degradation studies. Microorganisms were present in two of the liquid products when delivered, GroutAid and Super-Parmix. The potential of the organic compounds in grout additives to be degraded by microorganisms, increasing the risk of biofilm formation and complexing compound production, must be considered. Microbial growth will also increase the possibility of hydrogen sulphide formation. (orig.)

  19. Experiment on degradation of methane adsorption in coal by aerobic microorganism under low oxygen condition%低氧条件下好氧型微生物降解煤吸附甲烷实验

    Institute of Scientific and Technical Information of China (English)

    田坤云; 崔学锋; 张瑞林

    2016-01-01

    In order to study the degradation efficiency of aerobic microorganism on methane adsorption in coal under low oxy-gen environment condition, the aerobic methane oxidizing bacteria for degradation of methane with high efficiency was culti-vated, isolated and preliminary identified.An experimental analysis system on methane degradation under low oxygen envi-ronment was self-developed based on the methane adsorption and desorption device using high-pressure volumetric method, and the degradation efficiencies of methane oxidizing bacteria under the conditions of 0%, 5%and 15%oxygen concentra-tion were studied.By comparing the decrement of methane, increment of carbon dioxide and decrement of oxygen before and after experiment, it showed that in the range of oxygen concentration (0~15%) , with the increase of oxygen concentration and the duration of degradation time, the decrement of methane could reach 130.5 cm3 , the maximum increment of carbon dioxide could reach 25.7 cm3 , while 69 cm3 oxygen could be consumed at most.Under the condition of anaerobic environ-ment, the physiological activity of aerobic methane oxidizing bacteria was subject to certain restrictions, but the maximum degradation amount of methane could still reach 11.9 cm3 , and 3.5 cm3 carbon dioxide was produced.%为了研究好氧型微生物对低氧气浓度环境条件下煤吸附甲烷的降解效能,培养、分离、初步鉴定了高效降解甲烷的好氧型甲烷氧化菌。并在高压容量法瓦斯吸附-解吸装置的基础上,自主开发了低氧环境下甲烷降解实验分析系统,研究了氧气浓度为0%、5%和15%三种条件下甲烷氧化菌的降解效能,通过对实验前后甲烷减少量,二氧化碳增加量,氧气减少量进行分析。结果表明:在氧气浓度(0%~15%)范围内,随着氧气浓度升高及降解时间的持续,甲烷的减少量可达130.5 cm3,二氧化碳的增加量最高可达25.7 cm3,同时最多消耗69

  20. Adsorption and degradation of five selected antibiotics in agricultural soil.

    Science.gov (United States)

    Pan, Min; Chu, L M

    2016-03-01

    Large quantities of antibiotics are being added to agricultural fields worldwide through the application of wastewater, manures and biosolids, resulting in antibiotic contamination and elevated environmental risks in terrestrial environments. Most studies on the environmental fate of antibiotics focus on aquatic environments or wastewater treatment plants. Little is known about the behavior of antibiotics at environmentally relevant concentrations in agricultural soil. In this study we evaluated the adsorption and degradation of five different antibiotics (tetracycline, sulfamethazine, norfloxacin, erythromycin, and chloramphenicol) in sterilized and non-sterilized agricultural soils under aerobic and anaerobic conditions. Adsorption was highest for tetracycline (Kd, 1093 L/kg), while that for sulfamethazine was negligible (Kd, 1.365 L/kg). All five antibiotics were susceptible to microbial degradation under aerobic conditions, with half-lives ranging from 2.9 to 43.3 d in non-sterilized soil and 40.8 to 86.6 d in sterilized soil. Degradation occurred at a higher rate under aerobic conditions but was relatively persistent under anaerobic conditions. For all the antibiotics, a higher initial concentration was found to slow down degradation and prolong persistence in soil. The degradation behavior of the antibiotics varied in relation to their physicochemical properties as well as the microbial activities and aeration of the recipient soil. The poor adsorption and relative persistence of sulfamethazine under both aerobic and anaerobic conditions suggest that it may pose a higher risk to groundwater quality. An equation was proposed to predict the fate of antibiotics in soil under different field conditions, and assess their risks to the environment.

  1. Pore-scale insights to the rate of organic carbon degradation and biofilm formation under variable hydro-biogeochemical conditions in soils and sediments

    Science.gov (United States)

    Liu, C.; Yan, Z.; Liu, Y.; Li, M.; Bailey, V. L.

    2015-12-01

    Biogeochemical processes that control microbial growth, organic carbon degradation, and CO2 production and migration are fundamentally occur at the pore scale. In this presentation, we will describe our recent results of a pore-scale simulation research to investigate: 1) how moisture content and distribution affects oxygen delivery, organic carbon availability, and microbial activities that regulate the rate of organic carbon degradation and CO2 production in aerobic systems; and 2) how pore-scale reactive transport processes affect local microbial growth, biofilm formation, and overall rate of microbial reactions in anoxic systems. The results revealed that there is an optimal moisture content for aerobic bacterial respiration and CO2 production. When moisture is below the optimal value, organic carbon availability limits its degradation due to diffusion and osmotic stress to bacterial reactivity; and when moisture is above the optimal value, oxygen delivery limits microbial respiration. The optimal moisture condition is, however, a function of soil texture and physical heterogeneity, bioavailable soil organic carbon, and microbial community function. In anoxic and saturated system, simulation results show that biofilm preferentially forms in concave areas around sand particles and macro aggregates where cross-directional fluxes of organic carbon and electron acceptors (e.g., nitrate) favor microbial growth and attachment. The results provide important insights to the establishment of constitutive relationships between the macroscopic rates of soil organic carbon degradation and moisture content, and to the development of biogeochemical reactive transport models that incorporate biofilm structures and physio-chemical heterogeneity in soils and sediments.

  2. Characterization of Methane Degradation and Methane-Degrading Microbes in Alaska Coastal Water

    Energy Technology Data Exchange (ETDEWEB)

    Kirchman, David L. [Univ. of Delaware, Lewes, DE (United States)

    2012-03-29

    The net flux of methane from methane hydrates and other sources to the atmosphere depends on methane degradation as well as methane production and release from geological sources. The goal of this project was to examine methane-degrading archaea and organic carbon oxidizing bacteria in methane-rich and methane-poor sediments of the Beaufort Sea, Alaska. The Beaufort Sea system was sampled as part of a multi-disciplinary expedition (Methane in the Arctic Shelf or MIDAS) in September 2009. Microbial communities were examined by quantitative PCR analyses of 16S rRNA genes and key methane degradation genes (pmoA and mcrA involved in aerobic and anaerobic methane degradation, respectively), tag pyrosequencing of 16S rRNA genes to determine the taxonomic make up of microbes in these sediments, and sequencing of all microbial genes (metagenomes ). The taxonomic and functional make-up of the microbial communities varied with methane concentrations, with some data suggesting higher abundances of potential methane-oxidizing archaea in methane-rich sediments. Sequence analysis of PCR amplicons revealed that most of the mcrA genes were from the ANME-2 group of methane oxidizers. According to metagenomic data, genes involved in methane degradation and other degradation pathways changed with sediment depth along with sulfate and methane concentrations. Most importantly, sulfate reduction genes decreased with depth while the anaerobic methane degradation gene (mcrA) increased along with methane concentrations. The number of potential methane degradation genes (mcrA) was low and inconsistent with other data indicating the large impact of methane on these sediments. The data can be reconciled if a small number of potential methane-oxidizing archaea mediates a large flux of carbon in these sediments. Our study is the first to report metagenomic data from sediments dominated by ANME-2 archaea and is one of the few to examine the entire microbial assemblage potentially involved in

  3. Microbial and metabolic profiling reveal strong influence of water table and land-use patterns on classification of degraded tropical peatlands

    Science.gov (United States)

    Mishra, S.; Lee, W. A.; Hooijer, A.; Reuben, S.; Sudiana, I. M.; Idris, A.; Swarup, S.

    2014-04-01

    Tropical peatlands from southeast Asia are undergoing extensive drainage, deforestation and degradation for agriculture and human settlement purposes. This is resulting in biomass loss and subsidence of peat from its oxidation. Molecular profiling approaches were used to understand the relative influences of different land-use patterns, hydrological and physicochemical parameters on the state of degraded tropical peatlands. As microbial communities play a critical role in biogeochemical cascades in the functioning of peatlands, we used microbial and metabolic profiles as surrogates of community structure and functions, respectively. Profiles were generated from 230 bacterial 16 S rDNA fragments and 145 metabolic markers of 46 samples from 10 sites, including those from above and below water table in a contiguous area of 48 km2 covering five land-use types. These were degraded forest, degraded land, oil palm plantation, mixed crop plantation and settlements. Bacterial profiles were most influenced by variations in water table and land-use patterns, followed by age of drainage and peat thickness in that order. Bacterial profiling revealed differences in sites, based on the duration and frequency of water table fluctuations and on oxygen availability. Mixed crop plantations had the most diverse bacterial and metabolic profiles. Metabolic profiling, being closely associated with biogeochemical functions, could distinguish communities not only based on land-use types but also their geographic locations, thus providing a finer resolution than bacterial profiles. Agricultural inputs, such as nitrates, were highly associated with bacterial community structure of oil palm plantations, whereas phosphates and dissolved organic carbon influenced those from mixed crop plantations and settlements. Our results provide a basis for adopting molecular marker-based approaches to classify peatlands and determine relative importance of factors that influence peat functioning. Our

  4. Methane oxidation in a crude oil contaminated aquifer: Delineation of aerobic reactions at the plume fringes

    Science.gov (United States)

    Amos, R.T.; Bekins, B.A.; Delin, G.N.; Cozzarelli, I.M.; Blowes, D.W.; Kirshtein, J.D.

    2011-01-01

    High resolution direct-push profiling over short vertical distances was used to investigate CH4 attenuation in a petroleum contaminated aquifer near Bemidji, Minnesota. The contaminant plume was delineated using dissolved gases, redox sensitive components, major ions, carbon isotope ratios in CH4 and CO2, and the presence of methanotrophic bacteria. Sharp redox gradients were observed near the water table. Shifts in ??13CCH4 from an average of - 57.6??? (?? 1.7???) in the methanogenic zone to - 39.6??? (?? 8.7???) at 105 m downgradient, strongly suggest CH4 attenuation through microbially mediated degradation. In the downgradient zone the aerobic/anaerobic transition is up to 0.5 m below the water table suggesting that transport of O2 across the water table is leading to aerobic degradation of CH4 at this interface. Dissolved N2 concentrations that exceeded those expected for water in equilibrium with the atmosphere indicated bubble entrapment followed by preferential stripping of O2 through aerobic degradation of CH4 or other hydrocarbons. Multivariate and cluster analysis were used to distinguish between areas of significant bubble entrapment and areas where other processes such as the infiltration of O 2 rich recharge water were important O2 transport mechanisms. ?? 2011 Elsevier B.V. All rights reserved.

  5. Methane oxidation in a crude oil contaminated aquifer: Delineation of aerobic reactions at the plume fringes

    Science.gov (United States)

    Amos, Richard T.; Bekins, Barbara A.; Delin, Geoffrey N.; Cozzarelli, Isabelle M.; Blowes, David W.; Kirshtein, Julie D.

    2011-07-01

    High resolution direct-push profiling over short vertical distances was used to investigate CH 4 attenuation in a petroleum contaminated aquifer near Bemidji, Minnesota. The contaminant plume was delineated using dissolved gases, redox sensitive components, major ions, carbon isotope ratios in CH 4 and CO 2, and the presence of methanotrophic bacteria. Sharp redox gradients were observed near the water table. Shifts in δ 13C CH4 from an average of - 57.6‰ (± 1.7‰) in the methanogenic zone to - 39.6‰ (± 8.7‰) at 105 m downgradient, strongly suggest CH 4 attenuation through microbially mediated degradation. In the downgradient zone the aerobic/anaerobic transition is up to 0.5 m below the water table suggesting that transport of O 2 across the water table is leading to aerobic degradation of CH 4 at this interface. Dissolved N 2 concentrations that exceeded those expected for water in equilibrium with the atmosphere indicated bubble entrapment followed by preferential stripping of O 2 through aerobic degradation of CH 4 or other hydrocarbons. Multivariate and cluster analysis were used to distinguish between areas of significant bubble entrapment and areas where other processes such as the infiltration of O 2 rich recharge water were important O 2 transport mechanisms.

  6. Impact of continuous and intermittent supply of electric assistance on high-strength 2,4-dichlorophenol (2,4-DCP) degradation in electro-microbial system.

    Science.gov (United States)

    Cao, Zhanping; Zhang, Minghui; Zhang, Jingli; Zhang, Hongwei

    2016-07-01

    The high-strength 2,4-DCP, which exists in two states: dissolved and colloidal, was studied by a continuously electro-microbial system (CEMS) and an intermittently electro-microbial system (IEMS). The hydrolysis rate of colloidal 2,4-DCP in the IEMS without electric assistance was much higher than that in the CEMS. However, the degradation rate of the dissolved 2,4-DCP and the dissolved intermediates (2-chlorophenol and 4-chlorophenol) in the IEMS without electric assistance were much lower than that in the CEMS. By adjusting the intermittent operation mode, the degradation time of 2,4-DCP was shortened greatly. Microbial characteristics in the CEMS and the IEMS were different. The correlation analysis for the main factors affecting the hydrolysis was performed by SPSS, and it was found that the correlation coefficient (rp) was -0.912 for extracellular polymeric substances (EPS) content, 0.823 for zeta potential and 0.632 for relative hydrophobicity, respectively. PMID:27092992

  7. Research progress in the microbial degradation of azo dyes%微生物降解偶氮染料的研究进展

    Institute of Scientific and Technical Information of China (English)

    卢婧; 余志晟; 张洪勋

    2013-01-01

    偶氮染料广泛应用于纺织印染、造纸印刷等行业,产生的染料废水严重污染环境.近年来,利用微生物(细菌、真菌、藻类)对偶氮染料进行脱色降解的研究报道很多.介绍了最近几年染料废水脱色降解研究中涉及到的微生物,并探讨了相关微生物对偶氮染料的脱色降解作用及其机理,旨在为运用微生物对偶氮染料废水进行脱色处理和降解研究提供参考和依据.%Azo dyes are widely used in textile dying,paper printing and other industries.The release of dye wastewater causes serious environmental pollution.In recent years,there has been an intensive research on microbial decolorization of dye wastewater,including bacteria,fungi,algae,etc.The function and mechanism of microbial decolorization and degradation of azo dyes based on the newest progress in the decolorization using microorganisms are discussed,so as to provide some reference and bases for the studies on microbial decolorization and degradation of azo dyes wastewater.

  8. Integrated ‘omics analysis for studying the microbial community response to a pH perturbation of a cellulose-degrading bioreactor culture

    Energy Technology Data Exchange (ETDEWEB)

    Boaro, Amy A.; Kim, Young-Mo; Konopka, Allan; Callister, Stephen J.; Ahring, Birgitte K.

    2014-12-01

    Integrated ‘omics have been used on pure cultures and co-cultures, yet they have not been applied to complex microbial communities to examine questions of perturbation response. In this study, we used integrated ‘omics to measure the perturbation response of a cellulose-degrading bioreactor community fed with microcrystalline cellulose (Avicel). We predicted that a pH decrease by addition of a pulse of acid would reduce microbial community diversity and temporarily reduce reactor function such as cellulose degradation. However, 16S rDNA pyrosequencing results revealed increased alpha diversity in the microbial community after the perturbation, and a persistence of the dominant community members over the duration of the experiment. Proteomics results showed a decrease in activity of proteins associated with Fibrobacter succinogenes two days after the perturbation followed by increased protein abundances six days after the perturbation. The decrease in cellulolytic activity suggested by the proteomics was confirmed by the accumulation of Avicel in the reactor. Metabolomics showed a pattern similar to that of the proteome, with amino acid production decreasing two days after the perturbation and increasing after six days. This study demonstrated that community ‘omics data provides valuable information about the interactions and function of anaerobic cellulolytic community members after a perturbation.

  9. Impact of continuous and intermittent supply of electric assistance on high-strength 2,4-dichlorophenol (2,4-DCP) degradation in electro-microbial system.

    Science.gov (United States)

    Cao, Zhanping; Zhang, Minghui; Zhang, Jingli; Zhang, Hongwei

    2016-07-01

    The high-strength 2,4-DCP, which exists in two states: dissolved and colloidal, was studied by a continuously electro-microbial system (CEMS) and an intermittently electro-microbial system (IEMS). The hydrolysis rate of colloidal 2,4-DCP in the IEMS without electric assistance was much higher than that in the CEMS. However, the degradation rate of the dissolved 2,4-DCP and the dissolved intermediates (2-chlorophenol and 4-chlorophenol) in the IEMS without electric assistance were much lower than that in the CEMS. By adjusting the intermittent operation mode, the degradation time of 2,4-DCP was shortened greatly. Microbial characteristics in the CEMS and the IEMS were different. The correlation analysis for the main factors affecting the hydrolysis was performed by SPSS, and it was found that the correlation coefficient (rp) was -0.912 for extracellular polymeric substances (EPS) content, 0.823 for zeta potential and 0.632 for relative hydrophobicity, respectively.

  10. Comparative plant uptake and microbial degradation of trichloroethylene in the rhizospheres of five plant species-- implications for bioremediation of contaminated surface soils

    Energy Technology Data Exchange (ETDEWEB)

    Anderson, T.A. (Tennessee Univ., Knoxville, TN (United States)); Walton, B.T. (Oak Ridge National Lab., TN (United States))

    1992-01-01

    The objective of this study was to collect data that would provide a foundation for the concept of using vegetation to enhance in situ bioremediation of contaminated surface soils. Soil and vegetation (Lespedeza cuneata, Paspalum notatum, Pinus taeda, and Solidago sp.) samples from the Miscellaneous Chemicals Basin (MCB) at the Savannah River Site were used in tests to identify critical plant and microbiological variables affecting the fate of trichloroethylene (TCE) in the root zone. Microbiological assays including phospholipid acid analyses, and {sup 14}C-acetate incorporation were conducted to elucidate differences in rhizosphere and nonvegetated soil microbial communities from the MCB. The microbial activity, biomass, and degradation of TCE in rhizosphere soils were significantly greater than corresponding nonvegetated soils. Vegetation had a positive effect on microbial degradation of {sup 14}C-TCE in whole-plant experiments. Soils from the MCB containing Lespedeza cuneata, Pinus taeda, and Glycine max mineralized greater than 25% of the {sup 14}C- TCE added compared with less than 20% in nonvegetated soils. Collectively, these results provide evidence for the positive role of vegetation in enhancing biodegradation.

  11. Evolution of Hydrocarbon-Degrading Microbial Communities in the Aftermath of the Deepwater Horizon Oil Well Blowout in the Gulf of Mexico

    Science.gov (United States)

    Andersen, G.; Dubinsky, E. A.; Chakraborty, R.; Hollibaugh, J. T.; Hazen, T. C.

    2012-12-01

    The Deepwater Horizon oil spill created large plumes of dispersed oil and gas that remained deep in the water column and stimulated growth of several deep-sea bacteria that can degrade hydrocarbons at cold temperatures. We tracked microbial community composition before, during and after the 83-day spill to determine relationships between microbial dynamics, and hydrocarbon and dissolved-oxygen concentrations. Dominant bacteria in plumes shifted drastically over time and were dependent on the concentration of hydrocarbons, and the relative quantities of insoluble and soluble oil fractions. Unmitigated flow from the wellhead early in the spill resulted in the highest concentrations of oil and relatively more n-alkanes suspended in the plume as small oil droplets. These conditions resulted in near complete dominance by alkane-degrading Oceanospirillales, Pseudomonas and Shewanella. Six-weeks into the spill overall hydrocarbon concentrations in the plume decreased and were almost entirely composed of BTEX after management actions reduced emissions into the water column. These conditions corresponded with the emergence of Colwellia, Pseudoalteromonas, Cycloclasticus and Halomonas that are capable of degrading aromatic compounds. After the well was contained dominant plume bacteria disappeared within two weeks after the spill and transitioned to an entirely different set of bacteria dominated by Flavobacteria, Methylophaga, Alteromonas and Rhodobacteraceae that were found in anomalous oxygen depressions throughout August and are prominent degraders of both high molecular weight organic matter as well as hydrocarbons. Bio-Sep beads amended with volatile hydrocarbons from MC-252 oil were used from August through September to create hydrocarbon-amended traps for attracting oil-degrading microbes in situ. Traps were placed at multiple depths on a drilling rig about 600-m from the original MC-252 oil spill site. Microbes were isolated on media using MC-252 oil as the sole

  12. Relationships between chemical oxygen demand (COD) components and toxicity in a sequential anaerobic baffled reactor/aerobic completely stirred reactor system treating Kemicetine

    International Nuclear Information System (INIS)

    In this study the interactions between toxicity removals and Kemicetine, COD removals, intermediate products of Kemicetine and COD components (CODs originating from slowly degradable organics, readily degradable organics, inert microbial products and from the inert compounds) were investigated in a sequential anaerobic baffled reactor (ABR)/aerobic completely stirred tank reactor (CSTR) system with a real pharmaceutical wastewater. The total COD and Kemicetine removal efficiencies were 98% and 100%, respectively, in the sequential ABR/CSTR systems. 2-Amino-1 (p-nitrophenil)-1,3 propanediol, l-p-amino phenyl, p-amino phenol and phenol were detected in the ABR as the main readily degradable inter-metabolites. In the anaerobic ABR reactor, the Kemicetin was converted to corresponding inter-metabolites and a substantial part of the COD was removed. In the aerobic CSTR reactor the inter-metabolites produced in the anaerobic reactor were completely removed and the COD remaining from the anerobic reactor was biodegraded. It was found that the COD originating from the readily degradable organics did not limit the anaerobic degradation process, while the CODs originating from the slowly degradable organics and from the inert microbial products significantly decreased the anaerobic ABR reactor performance. The acute toxicity test results indicated that the toxicity decreased from the influent to the effluent of the aerobic CSTR reactor. The ANOVA test statistics showed that there was a strong linear correlation between acute toxicity, CODs originating from the slowly degradable organics and inert microbial products. A weak correlation between acute toxicity and CODs originating from the inert compounds was detected.

  13. Relationships between chemical oxygen demand (COD) components and toxicity in a sequential anaerobic baffled reactor/aerobic completely stirred reactor system treating Kemicetine.

    Science.gov (United States)

    Sponza, Delia Teresa; Demirden, Pinar

    2010-04-15

    In this study the interactions between toxicity removals and Kemicetine, COD removals, intermediate products of Kemicetine and COD components (CODs originating from slowly degradable organics, readily degradable organics, inert microbial products and from the inert compounds) were investigated in a sequential anaerobic baffled reactor (ABR)/aerobic completely stirred tank reactor (CSTR) system with a real pharmaceutical wastewater. The total COD and Kemicetine removal efficiencies were 98% and 100%, respectively, in the sequential ABR/CSTR systems. 2-Amino-1 (p-nitrophenil)-1,3 propanediol, l-p-amino phenyl, p-amino phenol and phenol were detected in the ABR as the main readily degradable inter-metabolites. In the anaerobic ABR reactor, the Kemicetin was converted to corresponding inter-metabolites and a substantial part of the COD was removed. In the aerobic CSTR reactor the inter-metabolites produced in the anaerobic reactor were completely removed and the COD remaining from the anerobic reactor was biodegraded. It was found that the COD originating from the readily degradable organics did not limit the anaerobic degradation process, while the CODs originating from the slowly degradable organics and from the inert microbial products significantly decreased the anaerobic ABR reactor performance. The acute toxicity test results indicated that the toxicity decreased from the influent to the effluent of the aerobic CSTR reactor. The ANOVA test statistics showed that there was a strong linear correlation between acute toxicity, CODs originating from the slowly degradable organics and inert microbial products. A weak correlation between acute toxicity and CODs originating from the inert compounds was detected.

  14. Exploring the functional diversity of the supraglacial environment: Microbial degradation of the pesticide 2,4-D on the Greenland Ice Sheet

    Science.gov (United States)

    Stibal, M.; Bælum, J.; Holben, W. E.; Jacobsen, C. S.

    2012-12-01

    The surface of the Greenland ice sheet (GrIS) harbours a diverse community of heterotrophic microorganisms. Organic compounds of anthropogenic origin, including pesticides, are deposited on the GrIS; however, the fate of these compounds in the ice is currently unknown. In this study we determine the potential of the microbial community from the surface of the GrIS to mineralise the pesticide 2,4-dichlorophenoxyacetic acid (2,4-D). It is one of the most easily degraded compounds among the phenoxyacetic acid pesticides, and the ability to mineralise 2,4-D has been found to be widespread in microbial communities around the globe. Functional genes involved in the degradation pathway have also been characterised. Thus, 2,4-D represents a very suitable model compound to use in order to gain an insight into pollutant degradation dynamics in the rapidly changing Arctic region. We collected surface ice cores on the GrIS and incubated them for up to 529 days in microcosms simulating in situ conditions. We measured mineralisation of side-chain- and ring-labelled 14C-2,4-D in the samples and performed quantitative PCR targeting the tfdA gene, encoding an enzyme catalysing the first step in the degradation pathway of 2,4-D, in the DNA extracted from the ice after the experiments. We show that the microbial community on the surface of the GrIS is of low diversity, but contains microbes capable of degrading 2,4-D. The low diversity of the community and the similarity of the detected clones to those from other icy environment clones suggest that the bacterial community on the GrIS is selected from a pool of propagules deposited on the surface of the ice sheet, based on the level of adaptation to the conditions in the surface ice. The 2,4-D degraders are likely present in very low numbers, and they can mineralise 2,4-D at a rate of up to 1 nmol per m2 per day, equivalent to ~26 ng C m-2 d-1. We contend that the surface of the GrIS should not be considered to be a mere reservoir of

  15. Research progress in microbial degradation of antibiotics%微生物降解抗生素的研究进展

    Institute of Scientific and Technical Information of China (English)

    刘元望; 李兆君; 冯瑶; 成登苗; 胡海燕; 张文娟

    2016-01-01

    近几十年来,抗生素的大量使用所引起的公共健康、资源利用和环境污染等问题倍受社会关注。由于微生物对抗生素削减的高效、低耗、环保和操作简单等优点,微生物降解法已成为处理抗生素污染的有效途径。在综述近几十年来利用微生物方法处理抗生素污染的技术、抗生素降解功能微生物的筛选、降解条件优化、降解效果及其降解机制等方面研究进展的基础上,指出了今后的研究方向。%Antibiotics, a group of chemicals, are widely used in treating human diseases and animal diseases and promoting animal growth. It was estimated that approximately 2300 tons of antibiotics were consumed in veterinary medicine in European countries and about 52%of all antibiotics(approximately 162 000 tons)were used for veterinary medicine in China in 2013. However, antibiotics could not be completely absorbed by the animal body, and most is excreted along with urine or feces, either unaltered or as metabolites. Antibiotics entered the envi-ronmental compartments at high rates, which resulted in concerns over public health, resource utilization and environmental pollution. Therefore, more and more attention has been paid to their effective elimination in the environment. The degradation of antibiotics by special microorganisms has been considered to be an efficient method for getting rid of antibiotics from the environment because of its low cost, simple management, and high degradation rates compared to other methods such as advanced oxidation processes, active carbon adsorption, low-temperature plasma technology, and membrane processing. In the present paper, the progress in antibiotic degradation by microorgan-isms and its mechanisms were reviewed in aspects of screening of specific functional microorganisms responsible for antibiotic degradation, optimization of microbial degradation conditions, degradation efficiencies and mechanisms including

  16. Influence of thermophilic aerobic digestion as a sludge pre-treatment and solids retention time of mesophilic anaerobic digestion on the methane production, sludge digestion and microbial communities in a sequential digestion process.

    Science.gov (United States)

    Jang, Hyun Min; Cho, Hyun Uk; Park, Sang Kyu; Ha, Jeong Hyub; Park, Jong Moon

    2014-01-01

    In this study, the changes in sludge reduction, methane production and microbial community structures in a process involving two-stage thermophilic aerobic digestion (TAD) and mesophilic anaerobic digestion (MAD) under different solid retention times (SRTs) between 10 and 40 days were investigated. The TAD reactor (RTAD) was operated with a 1-day SRT and the MAD reactor (RMAD) was operated at three different SRTs: 39, 19 and 9 days. For a comparison, control MAD (RCONTROL) was operated at three different SRTs of 40, 20 and 10 days. Our results reveal that the sequential TAD-MAD process has about 42% higher methane production rate (MPR) and 15% higher TCOD removal than those of RCONTROL when the SRT decreased from 40 to 20 days. Denaturing gradient gel electrophoresis (DGGE) and real-time PCR results indicate that RMAD maintained a more diverse bacteria and archaea population compared to RCONTROL, due to the application of the biological TAD pre-treatment process. In RTAD, Ureibacillus thermophiles and Bacterium thermus were the major contributors to the increase in soluble organic matter. In contrast, Methanosaeta concilii, a strictly aceticlastic methanogen, showed the highest population during the operation of overall SRTs in RMAD. Interestingly, as the SRT decreased to 20 days, syntrophic VFA oxidizing bacteria, Clostridium ultunense sp., and a hydrogenotrophic methanogen, Methanobacterium beijingense were detected in RMAD and RCONTROL. Meanwhile, the proportion of archaea to total microbe in RMAD and RCONTROL shows highest values of 10.5 and 6.5% at 20-d SRT operation, respectively. Collectively, these results demonstrate that the increased COD removal and methane production at different SRTs in RMAD might be attributed to the increased synergism among microbial species by improving the hydrolysis of the rate limiting step in sludge with the help of the biological TAD pre-treatment. PMID:23871253

  17. Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

    OpenAIRE

    Lu, Zhenmei; Deng, Ye; Van Nostrand, Joy D.; He, Zhili; Voordeckers, James; Zhou, Aifen; Lee, Yong-Jin; Olivia U Mason; Dubinsky, Eric A.; Chavarria, Krystle L.; Lauren M Tom; Fortney, Julian L.; Lamendella, Regina; Jansson, Janet K.; D'haeseleer, Patrik

    2011-01-01

    The Deepwater Horizon oil spill in the Gulf of Mexico is the deepest and largest offshore spill in the United State history and its impacts on marine ecosystems are largely unknown. Here, we showed that the microbial community functional composition and structure were dramatically altered in a deep-sea oil plume resulting from the spill. A variety of metabolic genes involved in both aerobic and anaerobic hydrocarbon degradation were highly enriched in the plume compared with outside the plume...

  18. Extracellular Electron Transfer from Aerobic Bacteria to Au-Loaded TiO2 Semiconductor without Light: A New Bacteria-Killing Mechanism Other than Localized Surface Plasmon Resonance or Microbial Fuel Cells.

    Science.gov (United States)

    Wang, Guomin; Feng, Hongqing; Gao, Ang; Hao, Qi; Jin, Weihong; Peng, Xiang; Li, Wan; Wu, Guosong; Chu, Paul K

    2016-09-21

    Titania loaded with noble metal nanoparticles exhibits enhanced photocatalytic killing of bacteria under light illumination due to the localized surface plasmon resonance (LSPR) property. It has been shown recently that loading with Au or Ag can also endow TiO2 with the antibacterial ability in the absence of light. In this work, the antibacterial mechanism of Au-loaded TiO2 nanotubes (Au@TiO2-NT) in the dark environment is studied, and a novel type of extracellular electron transfer (EET) between the bacteria and the surface of the materials is observed to cause bacteria death. Although the EET-induced bacteria current is similar to the LSPR-related photocurrent, the former takes place without light, and no reactive oxygen species (ROS) are produced during the process. The EET is also different from that commonly attributed to microbial fuel cells (MFC) because it is dominated mainly by the materials' surface, but not the bacteria, and the environment is aerobic. EET on the Au@TiO2-NT surface kills Staphylococcus aureus, but if it is combined with special MFC bacteria, the efficiency of MFC may be improved significantly.

  19. Degradation of 1,1,2,2-tetrachloroethane and accumulation of vinyl chloride in wetland sediment microcosms and in situ porewater: Biogeochemical controls and associations with microbial communities

    Science.gov (United States)

    Lorah, M.M.; Voytek, M.A.

    2004-01-01

    The biodegradation pathways of 1,1,2,2-tetrachloroethane (TeCA) and 1,1,2-trichloroethane (112TCA) and the associated microbial communities in anaerobic wetland sediments were evaluated using concurrent geochemical and genetic analyses over time in laboratory microcosm experiments. Experimental results were compared to in situ porewater data in the wetland to better understand the factors controlling daughter product distributions in a chlorinated solvent plume discharging to a freshwater tidal wetland at Aberdeen Proving Ground, Maryland. Microcosms constructed with wetland sediment from two sites showed little difference in the initial degradation steps of TeCA, which included simultaneous hydrogenolysis to 112TCA and dichloroelimination to 1,2-dichloroethene (12DCE). The microcosms from the two sites showed a substantial difference, however, in the relative dominance of subsequent dichloroelimination of 112TCA. A greater dominance of 112TCA dichloroelimination in microcosms constructed with sediment that was initially iron-reducing and subsequently simultaneously iron-reducing and methanogenic caused approximately twice as much vinyl chloride (VC) production as microcosms constructed with sediment that was methanogenic only throughout the incubation. The microcosms with higher VC production also showed substantially more rapid VC degradation. Field measurements of redox-sensitive constituents, TeCA, and its anaerobic degradation products along flowpaths in the wetland porewater also showed greater production and degradation of VC with concurrent methanogenesis and iron reduction. Molecular fingerprinting indicated that bacterial species [represented by a peak at a fragment size of 198 base pairs (bp) by MnlI digest] are associated with VC production from 112TCA dichloroelimination, whereas methanogens (190 and 307 bp) from the Methanococcales or Methanobacteriales family are associated with VC production from 12DCE hydrogenolysis. Acetate-utilizing methanogens

  20. Microbial and metabolic profiling reveal strong influence of water table and land-use patterns on classification of degraded tropical peatlands

    Directory of Open Access Journals (Sweden)

    S. Mishra

    2013-08-01

    Full Text Available Tropical peatlands from Southeast Asia are undergoing extensive drainage, deforestation and degradation for agriculture and human settlement purposes. This is resulting in biomass loss and subsidence of peat from its oxidation. Molecular profiling approaches were used to understand the relative influences of different land-use patterns, hydrological and physiochemical parameters on the state of degraded tropical peatlands. As microbial communities play a critical role in biogeochemical cascades in the functioning of peatlands, we used microbial and metabolic profiles as surrogates of community structure and functions, respectively. Profiles were generated from 230 bacterial 16S rDNA fragments and 145 metabolic markers of 46 samples from ten sites, including those from above and below water table in a contiguous area of 48 km2 covering five land-use types. These were degraded forest, degraded land, oil palm plantation, mixed crop plantation and settlements. Bacterial profiles were most influenced by variations in water table and land-use patterns, followed by age of drainage and peat thickness in that order. Bacterial profiling revealed differences in sites, based on the duration and frequency of water table fluctuations and on oxygen availability. Bacterial and metabolic profiles of degraded forest and mixed crop plantations were most diverse compared to other land-use types. Metabolic profiling, being closely associated with biogeochemical functions could distinguish communities not only based on land-use types but also their geographic locations, thus providing a finer resolution than bacterial profiles. Agricultural inputs, such as nitrates were highly associated with bacterial community structure of oil palm plantations, whereas phosphates and dissolved organic carbon influenced those from mixed crop plantations and settlements. Our results provide a basis for adopting molecular marker-based approaches to classify peatlands and determine

  1. Microbial diversity in methanogenic hydrocarbon-degrading enrichment cultures isolated from a water-flooded oil reservoir (Dagang oil field, China)

    Science.gov (United States)

    Jiménez, Núria; Cai, Minmin; Straaten, Nontje; Yao, Jun; Richnow, Hans H.; Krüger, Martin

    2015-04-01

    Microbial transformation of oil to methane is one of the main degradation processes taking place in oil reservoirs, and it has important consequences as it negatively affects the quality and economic value of the oil. Nevertheless, methane could constitute a recovery method of carbon from exhausted reservoirs. Previous studies combining geochemical and isotopic analysis with molecular methods showed evidence for in situ methanogenic oil degradation in the Dagang oil field, China (Jiménez et al., 2012). However, the main key microbial players and the underlying mechanisms are still relatively unknown. In order to better characterize these processes and identify the main microorganisms involved, laboratory biodegradation experiments under methanogenic conditions were performed. Microcosms were inoculated with production and injection waters from the reservoir, and oil or 13C-labelled single hydrocarbons (e.g. n-hexadecane or 2-methylnaphthalene) were added as sole substrates. Indigenous microbiota were able to extensively degrade oil within months, depleting most of the n-alkanes in 200 days, and producing methane at a rate of 76 ± 6 µmol day-1 g-1 oil added. They could also produce heavy methane from 13C-labeled 2-methylnaphthalene, suggesting that further methanogenesis may occur from the aromatic and polyaromatic fractions of Dagang reservoir fluids. Microbial communities from oil and 2-methyl-naphthalene enrichment cultures were slightly different. Although, in both cases Deltaproteobacteria, mainly belonging to Syntrophobacterales (e.g. Syntrophobacter, Smithella or Syntrophus) and Clostridia, mostly Clostridiales, were among the most represented taxa, Gammaproteobacteria could be only identified in oil-degrading cultures. The proportion of Chloroflexi, exclusively belonging to Anaerolineales (e.g. Leptolinea, Bellilinea) was considerably higher in 2-methyl-naphthalene degrading cultures. Archaeal communities consisted almost exclusively of representatives of

  2. Preparation, characterization, and microbial degradation of specifically radiolabeled (/sup 14/C)lignocelluloses from marine and fresh water macrophytes. [Spartina alterniflora; Juncus roemerianus; Rhizophora mangle; Carex walteriana

    Energy Technology Data Exchange (ETDEWEB)

    Benner, R.; Maccubbin, A.E.; Hodson, R.E.

    1984-02-01

    Specifically radiolabeled (/sup 14/C-lignin)lignocelluloses were prepared from the aquatic macrophytes Spartina alterniflora, Juncus roemerianus, Rhizophora mangle, and Carex walteriana by using (/sup 14/C)phenylalanine, (/sup 14/C)tyrosine, and (/sup 14/C)cinnamic acid as precursors. Specifically radiolabeled (/sup 14/C-polysaccharide)lignocelluloses were prepared by using (/sup 14/C)glucose as precursor. The rates of microbial degradation varied among (/sup 14/C-lignin)lignocelluloses labeled with different lignin precursors within the same plant species. In herbaceous plants, significant amounts (8 to 24%) of radioactivity from (/sup 14/C)phenylalanine and (/sup 14/C)tyrosine were found associated with protein. Microbial degradation of radiolabeled protein resulted in overestimation of lignin degradation rates in lignocelluloses derived from herbaceous aquatic plants. Other differences in degradation rates among (/sup 14/C-lignin)lignocelluloses from the same plant species were attributable to differences in the amount of label being associated with ester-linked subunits of peripheral lignin. After acid hydrolysis of (/sup 14/C-polysaccharide)lignocelluloses, radioactivity was detected in several sugars, although most of the radioactivity was distributed between glucose and xylose. After 576 h of incubation with salt marsh sediments, 38% of the polysaccharide component and between 6 and 16% of the lignin component (depending on the precursor) of J. roemerianus lignocellulose was mineralized to /sup 14/CO/sub 2/; during the same incubation period, 30% of the polysaccharide component and between 12 and 18% of the lignin component of S. alterniflora lignocellulose was mineralized.

  3. Detoxification of furfural in Corynebacterium glutamicum under aerobic and anaerobic conditions.

    Science.gov (United States)

    Tsuge, Yota; Hori, Yoshimi; Kudou, Motonori; Ishii, Jun; Hasunuma, Tomohisa; Kondo, Akihiko

    2014-10-01

    The toxic fermentation inhibitors in lignocellulosic hydrolysates raise serious problems for the microbial production of fuels and chemicals. Furfural is considered to be one of the most toxic compounds among these inhibitors. Here, we describe the detoxification of furfural in Corynebacterium glutamicum ATCC13032 under both aerobic and anaerobic conditions. Under aerobic culture conditions, furfuryl alcohol and 2-furoic acid were produced as detoxification products of furfural. The ratio of the products varied depending on the initial furfural concentration. Neither furfuryl alcohol nor 2-furoic acid showed any toxic effect on cell growth, and both compounds were determined to be the end products of furfural degradation. Interestingly, unlike under aerobic conditions, most of the furfural was converted to furfuryl alcohol under anaerobic conditions, without affecting the glucose consumption rate. Both the NADH/NAD(+) and NADPH/NADP(+) ratio decreased in the accordance with furfural concentration under both aerobic and anaerobic conditions. These results indicate the presence of a single or multiple endogenous enzymes with broad and high affinity for furfural and co-factors in C. glutamicum ATCC13032.

  4. Fermented liquid feed - Feed processing has a big impact on microbial degradation of free lysine during fermentation

    DEFF Research Database (Denmark)

    Canibe, Nuria; Jensen, Bent Borg

    2010-01-01

    pelleted feed was used. This was specially observed in a more established FLF (after backslopping had been practiced for several days). In conclusion, the data showed that free lysine was degraded to a high extent when fermenting non-pelleted-non-heated feed, whereas a limited degradation occurred during...

  5. Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads

    KAUST Repository

    Gertler, Christoph

    2015-04-29

    Uric acid is a promising hydrophobic nitrogen source for biostimulation of microbial activities in oil-impacted marine environments. This study investigated metabolic processes and microbial community changes in a series of microcosms using sediment from the Mediterranean and the Red Sea amended with ammonium and uric acid. Respiration, emulsification, ammonium and protein concentration measurements suggested a rapid production of ammonium from uric acid accompanied by the development of microbial communities containing hydrocarbonoclastic bacteria after 3 weeks of incubation. About 80 % of uric acid was converted to ammonium within the first few days of the experiment. Microbial population dynamics were investigated by Ribosomal Intergenic Spacer Analysis and Illumina sequencing as well as by culture-based techniques. Resulting data indicated that strains related to Halomonas spp. converted uric acid into ammonium, which stimulated growth of microbial consortia dominated by Alcanivorax spp. and Pseudomonas spp. Several strains of Halomonas spp. were isolated on uric acid as the sole carbon source showed location specificity. These results point towards a possible role of halomonads in the conversion of uric acid to ammonium utilized by hydrocarbonoclastic bacteria. © 2015 Springer Science+Business Media New York

  6. Variability in aerobic methane oxidation over the past 1.2 Myrs recorded in microbial biomarker signatures from Congo fan sediments

    Science.gov (United States)

    Talbot, Helen M.; Handley, Luke; Spencer-Jones, Charlotte L.; Dinga, Bienvenu Jean; Schefuß, Enno; Mann, Paul J.; Poulsen, John R.; Spencer, Robert G. M.; Wabakanghanzi, Jose N.; Wagner, Thomas

    2014-05-01

    Methane (CH4) is a strong greenhouse gas known to have perturbed global climate in the past, especially when released in large quantities over short time periods from continental or marine sources. It is therefore crucial to understand and, if possible, quantify the individual and combined response of these variable methane sources to natural climate variability. However, past changes in the stability of greenhouse gas reservoirs remain uncertain and poorly constrained by geological evidence. Here, we present a record from the Congo fan of a highly specific bacteriohopanepolyol (BHP) biomarker for aerobic methane oxidation (AMO), 35-aminobacteriohopane-30,31,32,33,34-pentol (aminopentol), that identifies discrete periods of increased AMO as far back as 1.2 Ma. Fluctuations in the concentration of aminopentol, and other 35-aminoBHPs, follow a pattern that correlates with late Quaternary glacial-interglacial climate cycles, with highest concentrations during warm periods. We discuss possible sources of aminopentol, and the methane consumed by the precursor methanotrophs, within the context of the Congo River setting, including supply of methane oxidation markers from terrestrial watersheds and/or marine sources (gas hydrate and/or deep subsurface gas reservoir). Compound-specific carbon isotope values of -30‰ to -40‰ for BHPs in ODP 1075 and strong similarities between the BHP signature of the core and surface sediments from the Congo estuary and floodplain wetlands from the interior of the Congo River Basin, support a methanotrophic and likely terrigenous origin of the 35-aminoBHPs found in the fan sediments. This new evidence supports a causal connection between marine sediment BHP records of tropical deep sea fans and wetland settings in the feeding river catchments, and thus tropical continental hydrology. Further research is needed to better constrain the different sources and pathways of methane emission. However, this study identifies the large potential

  7. Biostimulation and enhancement of pesticide degradation around water abstraction fields

    DEFF Research Database (Denmark)

    Levi, Suzi

    and precipitation of iron followed by the growth of iron bacteria leading to bioclogging reduces the efficiency of bioremediation of contaminated aquifers. The overall scope of this PhD study was to investigate biostimulated degradation potentials of pesticides at low concentrations in groundwater contaminated...... was degradable in aquifer sediments under aerobic conditions. Furthermore, we were able to transfer bacteria with the capability to degrade bentazone over a wide range of bentazone concentrations from the aquifer material to laboratory experiments. Laboratory microbial studies, aiming to support the observations...... of transformation of dichlorprop to 4-CPP by different analytic methods at an old landfill, were conducted to investigate anaerobic degradation of 14C-labeled dichlorprop. Concentrations of dichlorprop and 4-CPP with groundwater from the same field site under anaerobic conditions were also measured by analytical...

  8. Short-term degradation of terrestrial DOM in the coastal ocean: Implications for nutrient subsidies and marine microbial community structure

    Science.gov (United States)

    Oliver, A. A.; Tank, S. E.; Kellogg, C.

    2015-12-01

    The export of riverine dissolved organic matter (DOM) to the coastal ocean provides an important link between terrestrial and aquatic ecosystems. The coastal temperate rainforests of British Columbia contain extensive freshwater networks that export significant amounts of water and DOM to the ocean, representing significant cross-system hydrologic and biogeochemical linkages. To better understand the importance of these linkages and implications for ecosystem structure and function, we used an experimental approach to investigate the role of microbial and photodegradation transformations of DOM exported from small coastal catchments to the marine environment. At two time periods (August 2014, March 2015), stream water from the outlets of two coastal watersheds was filtered (microbial inoculums from across a salinity gradient (i.e., freshwater, estuarine, and marine). Treatments were incubated in the ocean under light and dark conditions for 8 days. At 0, 3 and 8 days, samples were analyzed for DOC, TDN, DIN, and DON. Changes in DOM composition were determined with optical characterization techniques such as absorbance (SUVA, S, Sr) and fluorescence (EEM). Microbial community response was measured using cell counts and DNA/RNA amplicon sequencing to determine changes in bacterial abundance and community composition. General patterns indicated that microbial communities from the high salinity treatment (i.e. most marine) were the most effective at utilizing freshwater DOM, especially under light conditions. In some treatments, DOM appeared as a potential source of inorganic nitrogen with corresponding shifts in microbial community composition. Incubations using inoculum from low and mid salinity levels demonstrated smaller changes, indicating that DOM exported from these streams may not be extensively utilized until exposed to higher salinity environments further from stream outlets. These results suggest a role for terrestrial sourced-DOM as a subsidy for microbial

  9. Stable carbon isotopic compositions of intact polar lipids reveal complex carbon flow patterns among hydrocarbon degrading microbial communities at the Chapopote asphalt volcano

    Science.gov (United States)

    Schubotz, Florence; Lipp, Julius S.; Elvert, Marcus; Hinrichs, Kai-Uwe

    2011-08-01

    Seepage of asphalt forms the basis of a cold seep system at 3000 m water depth at the Chapopote Knoll in the southern Gulf of Mexico. Anaerobic microbial communities are stimulated in the oil-impregnated sediments as evidenced by the presence of intact polar membrane lipids (IPLs) derived from archaea and Bacteria at depths up to 7 m below the seafloor. Detailed investigation of stable carbon isotope composition (δ 13C) of alkyl and acyl moieties derived from a range of IPL precursors with distinct polar head groups resolved the complexity of carbon metabolisms and utilization of diverse carbon sources by uncultured microbial communities. In surface sediments most of the polar lipid-derived fatty acids with phosphatidylethanolamine (PE), phosphatidylglycerol (PG) and diphosphatidylglycerol (DPG) head groups could be tentatively assigned to autotrophic sulfate-reducing bacteria, with a relatively small proportion involved in the anaerobic oxidation of methane. Derivatives of phosphatidyl-( N)-methylethanolamine (PME) were abundant and could be predominantly assigned to heterotrophic oil-degrading bacteria. Archaeal IPLs with phosphate-based hydroxyarchaeols and diglycosidic glyceroldibiphytanylglyceroltetraethers (GDGTs) were assigned to methanotrophic archaea of the ANME-2 and ANME-1 cluster, respectively, whereas δ 13C values of phosphate-based archaeols and mixed phosphate-based and diglycosidic GDGTs point to methanogenic archaea. At a 7 m deep sulfate-methane transition zone that is linked to the upward movement of gas-laden petroleum, a distinct increase in abundance of archaeal IPLs such as phosphate-based hydroxyarchaeols and diglycosidic archaeol and GDGTs is observed; their δ 13C values are consistent with their origin from both methanotrophic and methanogenic archaea. This study reveals previously hidden, highly complex patterns in the carbon-flow of versatile microbial communities involved in the degradation of heavy oil including hydrocarbon gases

  10. Bioremediation of petroleum hydrocarbons: catabolic genes, microbial communities, and applications.

    Science.gov (United States)

    Fuentes, Sebastián; Méndez, Valentina; Aguila, Patricia; Seeger, Michael

    2014-06-01

    Bioremediation is an environmental sustainable and cost-effective technology for the cleanup of hydrocarbon-polluted soils and coasts. In spite of that longer times are usually required compared with physicochemical strategies, complete degradation of the pollutant can be achieved, and no further confinement of polluted matrix is needed. Microbial aerobic degradation is achieved by the incorporation of molecular oxygen into the inert hydrocarbon molecule and funneling intermediates into central catabolic pathways. Several families of alkane monooxygenases and ring hydroxylating dioxygenases are distributed mainly among Proteobacteria, Actinobacteria, Firmicutes and Fungi strains. Catabolic routes, regulatory networks, and tolerance/resistance mechanisms have been characterized in model hydrocarbon-degrading bacteria to understand and optimize their metabolic capabilities, providing the basis to enhance microbial fitness in order to improve hydrocarbon removal. However, microbial communities taken as a whole play a key role in hydrocarbon pollution events. Microbial community dynamics during biodegradation is crucial for understanding how they respond and adapt to pollution and remediation. Several strategies have been applied worldwide for the recovery of sites contaminated with persistent organic pollutants, such as polycyclic aromatic hydrocarbons and petroleum derivatives. Common strategies include controlling environmental variables (e.g., oxygen availability, hydrocarbon solubility, nutrient balance) and managing hydrocarbon-degrading microorganisms, in order to overcome the rate-limiting factors that slow down hydrocarbon biodegradation.

  11. Degradation and enantiomeric fractionation of mecoprop in soil previously exposed to phenoxy acid herbicides - New insights for bioremediation

    DEFF Research Database (Denmark)

    Frková, Zuzana; Johansen, Anders; de Jonge, Lis Wollesen;

    2016-01-01

    bioremediation. The degradation processes were studied in soil sampled at different depths (3, 4.5 and 6m) at a Danish urban site with a history of phenoxy acid contamination. We observed preferential degradation of the R-enantiomer only under aerobic conditions in the soil samples from 3- and 6-m depth......, and biodegradation rates may differ between enantiomers. Therefore, enantio-preferred degradation of mecoprop (MCPP) in soil was measured to get in-depth information on whether amendment with glucose (BOD equivalents as substrate for microbial growth) and nitrate (redox equivalents for oxidation) can stimulate...

  12. IN VITRO FERMENTABILITY, DEGRADABILITY AND MICROBIAL BIOMASS PRODUCT OF COMPLETE RATION CONTAINING A COMBINATION OF FIELD GRASS, CONCENTRATE AND NUTRIENT RICH SUPPLEMENT

    Directory of Open Access Journals (Sweden)

    D.S. Wahyuni

    2014-10-01

    Full Text Available The objective of this experiment was to obtain an optimum combination between field grass,concentrate and Nutrient Rich Supplement (NRS based on in vitro study using Hohenheim gas test. Theexperimental diets were: R1 (control diet = 70% field grass + 30% concentrate, R2 (70% field grass +25% concentrate + 5% NRS, R3 (70% field grass + 20% concentrate + 10% NRS and R4 (70% fieldgrass + 15% concentrate + 15% NRS. A randomized block design with four treatments and fourreplications was carried out. Buffalo rumen fluid was taken in different time and was used as block orreplication. Data were analyzed by Analysis of Variance (ANOVA. Significant differences amongtreatments were determined by contrast orthogonal. The results showed that total gas production andtotal VFA concentration were highest (P<0.05 in R4 among the treatments. Addition of 15% NRS incomplete ration (R4 increased NH3 concentration 10.34%. Addition of 10% NRS and 15% NRS incomplete ration (R3 and R4 improved the microbial biomass product compared to control and 5% NRSin complete ration (R1 and R2. Dry matter (DM and organic matter (OM degradability weresignificantly higher (P<0.01 in 10% NRS and 5% NRS in complete ration (R3 and R2 compared tocontrol and 15% NRS in complete ration (R1 and R4. It was concluded that combination between 70%field grass, 20% concentrate and 10% NRS in complete ration (R3 was more optimal for improving gasproduction, total VFA, NH3 concentration, microbial biomass product, dry matter degradability andorganic matter degradability, compared to control ration.

  13. Influence of an aerobic fungus grown on solid culture on ruminal degradability and on a mixture culture of anaerobic cellulolytic bacteria.

    Science.gov (United States)

    Hernández-Díaz, R; Pimentel-González, D J; Figueira, A C; Viniegra-González, G; Campos-Montiel, R G

    2010-06-01

    In this work, the effect of a solid fungal culture of Aspergillus niger (An) grown on coffee pulp on the in situ ruminal degradability (RD) of corn stover was evaluated. In addition, the effect of its extracts on the in vitro dry matter disappearance (IVDMD) and on a mixed culture of anaerobic cellulolytic bacteria (MCACB) was also investigated. The solid ferment was a crude culture of An, grown on coffee pulp. Regarding in situ RD, a significant difference (p < 0.05) was found between treatment with 200 g/day of the solid culture and control (no solid culture added) on dry matter, crude protein and neutral detergent fibre on RD. All the water extracts (pH 4, 7 and 10) enhanced IVDMD and stimulated the cellulolytic activity on a MCACB. Ultrafiltration results showed that active compounds with a molecular weight lower than 30 kDa were responsible for the effect on MCACB. Such results suggest that the effects of the solid An culture in RD are related to the presence of water soluble compounds having a molecular weight lower than 30 kDa.

  14. Microbial degradation of low-density polyethylene (LDPE) by Aspergillus clavatus strain JASK1 isolated from landfill soil

    OpenAIRE

    Gajendiran, Anudurga; Krishnamoorthy, Sharmila; Abraham, Jayanthi

    2016-01-01

    Polythene and plastic waste are found to accumulate in the environment, posing a major ecological threat. They are found to be considered non-degradable, once it enters the environment it has been found to remain there indefinitely. However, significant attention has been placed on biodegradable polymer, identification of microbes with degradative potential on plastic material. The aim of the present investigation was to biodegrade low-density polyethylene (LDPE) using potential fungi isolate...

  15. Degradation of transuranic-contaminated wastes under geological isolation conditions

    International Nuclear Information System (INIS)

    Results of extensive experimental studies on the degradation of existing defense transuranic-contaminated (TRU) wastes are presented. Environmental conditions for waste degradation are representative of deep geological isolation of TRU wastes in a bedded-salt repository, as anticipated for the proposed Waste Isolation Pilot Plant in southeastern New Mexico. TRU-contaminated waste matrices investigated include cellulosics, plastics, rubbers, mixed organic composite, bitumen, a developmental concrete-TRU ash matrix, mild steel, and inorganic process sludges. Degradation mechanisms studied were alpha radiolysis, microbial action, thermal decomposition and dewatering, and chemical corrosion. Experimental variables are waste composition, alpha-contamination level, temperature, pressure, time, water or brine content, aerobic or anaerobic conditions, etc. Results of waste degradation are presented in terms of gas generation rates, gas compositions, container corrosion rates, effectiveness of anti-corrosion coatings, microbial formation and degradation of chelating agents. Based on experimental results, the relative quantities of gas generated by individual mechanisms acting on the organic matrix wastes can be ranked as follows: (1) microbial action, (2) thermal decomposition (at 400C and higher), (3) alpha radiolysis, and (4) corrosion. Corrosion of metallic waste canisters and realistic bedded-salt repository conditions was determined not to have a significant effect on potential waste retrievability. The technical data provided in these studies are used in assessments to determine whether existing forms of TRU wastes are acceptable for safe geological isolation. (author)

  16. 猪粪好氧堆肥过程有机质降解和热量平衡模型%Modeling of Organic Matter Degradation and Thermal Balance during Pig Slurry Aerobic Composting

    Institute of Scientific and Technical Information of China (English)

    王永江; 黄光群; 韩鲁佳

    2011-01-01

    Modeling of organic matter degradation and thermal balance were built based on the first order assumption with respect to the quantity of biodegradable volatile solid ( BVS) and the law of thermal conservation during composting. Different kinds of organic matter were mainly degraded in different composting stages. For the organic matter degradation model,temperature,moisture content,oxygen content and free air space were considered as key influence factors to degeneration rate. For the model of thermal balance,forced convention and conduction were considered as the main heat removal form. In order to verify the constructed models,an aerobic composting process of pig slurry was conducted. Temperature,oxygen content,moisture content and organic matter concentration were all monitored in the process of composting. The results could be helpful for guiding composting process operation.%依据有机质降解一级动力学方程和系统热量平衡方程,充分考虑猪粪好氧堆肥有机质降解的梯次性对数学建模的影响,建立了反应器好氧堆肥过程有机质降解Monod模型和热量平衡模型.有机质降解Monod模型考虑了温度、含水率、氧体积分数和自由空域4种因素对降解系数的影响,其中温度作为最主要影响因素;热量平衡模型中主要考虑了对流、传导的热量传递方式.利用实验室好氧堆肥反应器进行的模型验证试验结果表明:堆肥试验实测值与模型模拟值表现出较好的一致性,有机质降解的实测值与模型模拟值的相对标准误差为13.02%,温度变化的实测值与模型模拟值的相对标准误差为9.9%.

  17. Aerobic exercise (image)

    Science.gov (United States)

    Aerobic exercise gets the heart working to pump blood through the heart more quickly and with more force than ... must be oxygenated more quickly, which quickens respiration. Aerobic exercise strengthens the heart and boosts healthy cholesterol ...

  18. Substrate interactions of benzene, toluene, and para-xylene during microbial degradation by pure cultures and mixed culture aquifer slurries

    International Nuclear Information System (INIS)

    Release of petroleum hydrocarbons in the environment is a widespread occurrence. One particular concern is the contamination of drinking water sources by the toxic, water-soluble, and mobile petroleum components benzene, toluene, and xylene (BTX). Benzene, toluene, and p-xylene (BTX) were degraded by indigenous mixed cultures in sandy aquifer material and by two pure cultures isolated from the same site. Although BTX compounds have a similar chemical structure, the fate of individual BTX compounds differed when the compounds were fed to each pure culture and mixed culture aquifer slurries. The identification of substrate interactions aided the understanding of this behavior. Beneficial substrate interactions included enhanced degradation of benzene-dependent degradation of toluene and p-xylene by Arthrobacter sp. strain HCB. Detrimental substrate interactions included retardation in benzene and toluene degradation by the presence of p-xylene in both aquifer slurries and Pseudomonas incubations. The catabolic diversity of microbes in the environment precludes generalizations about the capacity of individual BTX compounds to enhance or inhibit the degradation of other BTX compounds

  19. Microbial degradation of whole-grain complex carbohydrates and impact on short-chain fatty acids and health

    DEFF Research Database (Denmark)

    Knudsen, Knud Erik Bach

    2015-01-01

    to the intake of DF. The type and composition of cereal DF can consequently be used to modulate the microbial composition and activity as well as the production and molar ratios of short-chain fatty acids (SCFAs). Arabinoxylans and β-glucan in whole-grain cereals and cereal ingredients have been shown...... to augment SCFA production, with the strongest relative effect on butyrate. When arabinoxylans were provided as a concentrate, the effect was only on total SCFA production. Increased SCFA production in the large intestine was shown by the concentration in the portal vein, whereas the impact...... on the concentration in peripheral blood was less because the majority of propionate and butyrate is cleared in the liver. Active microbial fermentation with increased SCFA production reduced the exposure of potentially toxic compounds to the epithelium, potentially stimulating anorectic hormones and acting...

  20. A novel isolated Terrabacter-like bacterium can mineralize 2-aminopyrimidine, the principal metabolite of microbial sulfadiazine degradation.

    Science.gov (United States)

    Tappe, Wolfgang; Hofmann, Diana; Disko, Ulrich; Koeppchen, Stephan; Kummer, Sirgit; Vereecken, Harry

    2015-04-01

    Recently we showed that during the degradation of sulfadiazine (SDZ) by Microbacterium lacus strain SDZm4 the principal metabolite 2-aminopyrimidine (2-AP) accumulated to the same molar amount in the culture as SDZ disappeared (Tappe et al. Appl Environ Microbiol 79:2572-2577, 2013). Although 2-AP is considered a recalcitrant agent, long-term lysimeter experiments with (14)C-pyrimidine labeled SDZ ([(14)C]pyrSDZ) provided indications for substantial degradation of the pyrimidine moiety of the SDZ molecule. Therefore, we aimed to enrich 2-AP degrading bacteria and isolated a pure culture of a Terrabacter-like bacterium, denoted strain 2APm3. When provided with (14)C-labeled SDZ, M. lacus strain SDZm4 degraded [(14)C]pyrSDZ to [(14)C]2-AP. Resting cells of 2APm3 at a concentration of 5 × 10(6) cells ml(-1) degraded 62 µM [(14)C]2-AP to below the detection limit (0.6 µM) within 5 days. Disappearance of 2-AP resulted in the production of at least two transformation products (M1 and M2) with M2 being identified as 2-amino-4-hydroxypyrimidine. After 36 days, the transformation products disappeared and 83 % of the applied [(14)C]2-AP radioactivity was trapped as (14)CO2. From this we conclude that a consortium of two species should be able to almost completely degrade SDZ in soils. PMID:25715827

  1. Effect of incorporation of walnut cake (Juglans regia in concentrate mixture on degradation of dry matter, organic matter and production of microbial biomass in vitro in goat

    Directory of Open Access Journals (Sweden)

    Mohsin Ahmad Mir

    2015-10-01

    Full Text Available Aim: This study was carried out to investigate the effect of incorporation of different level of walnut cake in concentrate mixture on in vitro dry matter degradation in order to determine its level of supplementation in ruminant ration. Materials and Methods: Walnut cake was used @ 0, 10, 15, 20, 25 and 30% level to formulate an iso-nitrogenous concentrate mixtures and designated as T1, T2, T3, T4, T5 and T6 respectively. The different formulae of concentrate mixtures were used for in vitro gas production studies using goat rumen liquor with wheat straw in 40:60 ratio. Proximate composition, fiber fractionation and calcium and phosphrous content of walnut cake were estimated. Result: The per cent IVDMD value of T1 and T2 diets was 68.42 ± 1.20 and 67.25 ± 1.37 respectively which was found highest (P<0.05 T3, T4, T5 and T6. Similar trend was also found for TDOM and MBP. Inclusion of walnut cake at 10% level in the concentrate mixture does not affect in vitro dry matter digestibility (IVDMD, truly degradable organic matter (TDOM, mg/200 mg DM, total gas production, microbial biomass production (MBP and efficiency of microbial biomass production (EMP. Conclusion: It is concluded that walnut cake incorporation up to 10% level in the iso -nitrogenous concentrate mixture has no any negative effect on in vitro digestibility of dry matter (DM, TDOM, MBP, EMP and total gas production in goat.

  2. Delineation of Steroid-Degrading Microorganisms through Comparative Genomic Analysis

    Directory of Open Access Journals (Sweden)

    Lee H. Bergstrand

    2016-03-01

    Full Text Available Steroids are ubiquitous in natural environments and are a significant growth substrate for microorganisms. Microbial steroid metabolism is also important for some pathogens and for biotechnical applications. This study delineated the distribution of aerobic steroid catabolism pathways among over 8,000 microorganisms whose genomes are available in the NCBI RefSeq database. Combined analysis of bacterial, archaeal, and fungal genomes with both hidden Markov models and reciprocal BLAST identified 265 putative steroid degraders within only Actinobacteria and Proteobacteria, which mainly originated from soil, eukaryotic host, and aquatic environments. These bacteria include members of 17 genera not previously known to contain steroid degraders. A pathway for cholesterol degradation was conserved in many actinobacterial genera, particularly in members of the Corynebacterineae, and a pathway for cholate degradation was conserved in members of the genus Rhodococcus. A pathway for testosterone and, sometimes, cholate degradation had a patchy distribution among Proteobacteria. The steroid degradation genes tended to occur within large gene clusters. Growth experiments confirmed bioinformatic predictions of steroid metabolism capacity in nine bacterial strains. The results indicate there was a single ancestral 9,10-seco-steroid degradation pathway. Gene duplication, likely in a progenitor of Rhodococcus, later gave rise to a cholate degradation pathway. Proteobacteria and additional Actinobacteria subsequently obtained a cholate degradation pathway via horizontal gene transfer, in some cases facilitated by plasmids. Catabolism of steroids appears to be an important component of the ecological niches of broad groups of Actinobacteria and individual species of Proteobacteria.

  3. Effects of biodegradation of mecoprop, dichlorprop and bentazone by changing the redox conditions from anaerobic to aerobic in sandy aquifer

    DEFF Research Database (Denmark)

    Levi, Suzi; Bjerg, Poul Løgstrup; Albrechtsen, Hans-Jørgen

    2011-01-01

    in combination with geological variations may affect microbial degradation processes by mixing in even low oxygen concentrations and create steep gradients and drastic redox zones in aquifers. The aim of the current study was to investigate the stimulation of pesticides biodegradation by adding oxygen...... knowledge, this is the first observation of bentazone degradation with aquifer. Optimization of redox conditions from anaerobic to aerobic by adding oxygen stimulated the biodegradation of three pesticides.......Pesticides and metabolites are detected in an increasing number of aquifers resulting in closure of many drinking water wells. The natural redox conditions of aquifers are considered to be one of the important factors governing the pesticides degradation in groundwater. Water abstraction strategy...

  4. Microbial transformation of low-level radioactive waste

    Energy Technology Data Exchange (ETDEWEB)

    Francis, A.J.

    1980-06-01

    Microorganisms play a significant role in the transformation of the radioactive waste and waste forms disposed of at shallow-land burial sites. Microbial degradation products of organic wastes may influence the transport of buried radionuclides by leaching, solubilization, and formation of organoradionuclide complexes. The ability of indigenous microflora of the radioactive waste to degrade the organic compounds under aerobic and anaerobic conditions was examined. Leachate samples were extracted with methylene chloried and analyzed for organic compounds by gas chromatography and mass spectrometry. In general, several of the organic compounds in the leachates were degraded under aerobic conditions. Under anaerobic conditions, the degradation of the organics was very slow, and changes in concentrations of several acidic compounds were observed. Several low-molecular-weight organic acids are formed by breakdown of complex organic materials and are further metabolized by microorganisms; hence these compounds are in a dynamic state, being both synthesized and destroyed. Tributyl phosphate, a compound used in the extraction of metal ions from solutions of reactor products, was not degraded under anaerobic conditions.

  5. Microbial transformation of low-level radioactive waste

    International Nuclear Information System (INIS)

    Microorganisms play a significant role in the transformation of the radioactive waste and waste forms disposed of at shallow-land burial sites. Microbial degradation products of organic wastes may influence the transport of buried radionuclides by leaching, solubilization, and formation of organoradionuclide complexes. The ability of indigenous microflora of the radioactive waste to degrade the organic compounds under aerobic and anaerobic conditions was examined. Leachate samples were extracted with methylene chloried and analyzed for organic compounds by gas chromatography and mass spectrometry. In general, several of the organic compounds in the leachates were degraded under aerobic conditions. Under anaerobic conditions, the degradation of the organics was very slow, and changes in concentrations of several acidic compounds were observed. Several low-molecular-weight organic acids are formed by breakdown of complex organic materials and are further metabolized by microorganisms; hence these compounds are in a dynamic state, being both synthesized and destroyed. Tributyl phosphate, a compound used in the extraction of metal ions from solutions of reactor products, was not degraded under anaerobic conditions

  6. Degradation of herbicides in shallow Danish aquifers - an integrated laboratory and field study

    DEFF Research Database (Denmark)

    Albrechtsen, Hans-Jørgen; Mills, M.; Aamand, J.;

    2001-01-01

    , results were compared. Some herbicides were degraded under aerobic conditions (some phenoxy acids, DNOC and glyphosate) and others under aerobic conditions (other phenoxy acids, DNOC; there was some indication of atrazine transformation). Certain pesticides were not degraded in any investigations...

  7. New pathway for degradation of sulfonated azo dyes by microbial peroxidases of Phanerochaete chrysosporium and Streptomyces chromofuscus.

    OpenAIRE

    Goszczynski, S; Paszczynski, A; Pasti-Grigsby, M B; Crawford, R L; Crawford, D. L.

    1994-01-01

    Pathways for the degradation of 3,5-dimethyl-4-hydroxy-azobenzene-4'-sulfonic acid (I) and 3-methoxy-4-hydroxyazobenzene-4'-sulfonamide (II) by the manganese peroxidase and ligninase of Phanerochaete chrysosporium and by the peroxidase of Streptomyces chromofuscus have been proposed. Twelve metabolic products were found, and their mechanisms of formation were explained. Preliminary oxidative activation of the dyes resulted in the formation of cationic species, making the molecules vulnerable ...

  8. Influence of microbial inoculation and molasses and their combination on fermentation characteristics and ruminal degradability of grass silages

    OpenAIRE

    Gül, Mehmet; YÖRÜK, M. Akif; Karaoğlu, Mavlüt; Macit, Muhlis

    2011-01-01

    ABSTRACT. The aim of the current investigation was to determine the effect of applying a bacterial inoculant, molasses, and inoculantplus molasses combination on the fermentation dynamics of grass silages under laboratory conditions and ruminal degradabilities of drymatter (DM), acid detergent fiber (ADF) and neutral detergent fiber (NDF) for various incubation times. After harvesting, fresh grassforages containing 32% DM with or without additives were ensiled in 1-liter glass silos. Experime...

  9. Microbial Degradation of Phenols and Aromatic Hydrocarbons in Creosote-contaminated Groundwater Under Nitrate-reducing Conditions

    DEFF Research Database (Denmark)

    Flyvbjerg, John; Arvin, Erik; Jensen, Bjørn K.;

    1993-01-01

    Batch experiments were carried out to investigate the biodegradation of phenols and aromatic hydrocarbons under anaerobic, nitrate-reducing conditions in groundwater from a creosote-contaminated site at Fredensborg, Denmark. The bacteria in the creosote-contaminated groundwater degraded a mixture...... of toluene, phenol, the cresols (o-, m- and p-cresol) and the dimethylphenols 2,4-DMP and 3,4-DMP at both 10° and 20°C. Benzene, the xylenes, napthalene, 2,3-DMP, 2,5-DMP, 2,6-DMP and 3,5-DMP were resistant to biodegradation during 7–12 months of incubation. It was demonstrated that the degradation...... of toluene, 2,4-DMP, 3,4-DMP and p-cresol depended on nitrate or nitrite as electron acceptors. 40–80% of the nitrate consumed during degradation of the aromatic compounds was recovered as nitrite, and the consumption of nitrate was accompanied by a production of ATP. Stoichiometric calculations indicated...

  10. Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology

    Science.gov (United States)

    Koizumi, Yoshikazu; Kelly, John J.; Nakagawa, Tatsunori; Urakawa, Hidetoshi; El-Fantroussi, Said; Al-Muzaini, Saleh; Fukui, Manabu; Urushigawa, Yoshikuni; Stahl, David A.

    2002-01-01

    A mesophilic toluene-degrading consortium (TDC) and an ethylbenzene-degrading consortium (EDC) were established under sulfate-reducing conditions. These consortia were first characterized by denaturing gradient gel electrophoresis (DGGE) fingerprinting of PCR-amplified 16S rRNA gene fragments, followed by sequencing. The sequences of the major bands (T-1 and E-2) belonging to TDC and EDC, respectively, were affiliated with the family Desulfobacteriaceae. Another major band from EDC (E-1) was related to an uncultured non-sulfate-reducing soil bacterium. Oligonucleotide probes specific for the 16S rRNAs of target organisms corresponding to T-1, E-1, and E-2 were designed, and hybridization conditions were optimized for two analytical formats, membrane and DNA microarray hybridization. Both formats were used to characterize the TDC and EDC, and the results of both were consistent with DGGE analysis. In order to assess the utility of the microarray format for analysis of environmental samples, oil-contaminated sediments from the coast of Kuwait were analyzed. The DNA microarray successfully detected bacterial nucleic acids from these samples, but probes targeting specific groups of sulfate-reducing bacteria did not give positive signals. The results of this study demonstrate the limitations and the potential utility of DNA microarrays for microbial community analysis.

  11. Aerobic biodegradation potential of endocrine disrupting chemicals in surface-water sediment at Rocky Mountains National Park, USA

    Science.gov (United States)

    Bradley, Paul M.; Battaglin, William A.; Iwanowicz, Luke; Clark, Jimmy M.; Journey, Celeste A.

    2016-01-01

    Endocrine disrupting chemicals (EDC) in surface water and bed sediment threaten the structure and function of aquatic ecosystems. In natural, remote, and protected surface-water environments where contaminant releases are sporadic, contaminant biodegradation is a fundamental driver of exposure concentration, timing, duration, and, thus, EDC ecological risk. Anthropogenic contaminants, including known and suspected EDC, were detected in surface water and sediment collected from 2 streams and 2 lakes in Rocky Mountains National Park (ROMO). The potential for aerobic EDC biodegradation was assessed in collected sediments using 6 14C-radiolabeled model compounds. Aerobic microbial mineralization of natural (estrone and 17β-estradiol) and synthetic (17α-ethinylestradiol) estrogen was significant at all sites. ROMO bed sediment microbial communities also effectively degraded the xenoestrogens, bisphenol-A and 4-nonylphenol. The same sediment samples exhibited little potential for aerobic biodegradation of triclocarban, however, illustrating the need to assess a wider range of contaminant compounds. The current results support recent concerns over the widespread environmental occurrence of carbanalide antibacterials, like triclocarban and triclosan, and suggest that backcountry use of products containing these compounds should be discouraged.

  12. Aerobic biodegradation potential of endocrine-disrupting chemicals in surface-water sediment at Rocky Mountain National Park, USA.

    Science.gov (United States)

    Bradley, Paul M; Battaglin, William A; Iwanowicz, Luke R; Clark, Jimmy M; Journey, Celeste A

    2016-05-01

    Endocrine-disrupting chemicals (EDCs) in surface water and bed sediment threaten the structure and function of aquatic ecosystems. In natural, remote, and protected surface-water environments where contaminant releases are sporadic, contaminant biodegradation is a fundamental driver of exposure concentration, timing, duration, and, thus, EDC ecological risk. Anthropogenic contaminants, including known and suspected EDCs, were detected in surface water and sediment collected from 2 streams and 2 lakes in Rocky Mountain National Park (Colorado, USA). The potential for aerobic EDC biodegradation was assessed in collected sediments using 6 (14) C-radiolabeled model compounds. Aerobic microbial mineralization of natural (estrone and 17β-estradiol) and synthetic (17α-ethinylestradiol) estrogen was significant at all sites. Bed sediment microbial communities in Rocky Mountain National Park also effectively degraded the xenoestrogens bisphenol-A and 4-nonylphenol. The same sediment samples exhibited little potential for aerobic biodegradation of triclocarban, however, illustrating the need to assess a wider range of contaminant compounds. The present study's results support recent concerns over the widespread environmental occurrence of carbanalide antibacterials, like triclocarban and triclosan, and suggest that backcountry use of products containing these compounds should be discouraged. Environ Toxicol Chem 2016;35:1087-1096. Published 2015 Wiley Periodicals Inc. on behalf of SETAC. This article is a US Government work and, as such, is in the public domain in the United States of America. PMID:26588039

  13. 微生物降解纺织染料研究进展%The Development of Microbial Degradation of Textile Dyes

    Institute of Scientific and Technical Information of China (English)

    吕鹏

    2016-01-01

    Textile dyes relesed into the environment cause considerable water and soil pollution because they may be toxic, carcinogenic, mutagenic and clastogenic, which is a hazard to human health and ecological system. Over the last three decades, awareness and concern about the environmental and health hazards of textile dyes are increasing in the global community. The environmental and government legislations are becoming more and more tight regarding the removal of these pollutants from industrial wastewaters. Compared with physical and chemical methods, the microbial degradation is a cost-effective, efficient, biofriendly, and enviromentally benign method, and may be emerging as a unique effetctive method to deal with the removal of textile dyes. In this work, based on the summarization of the microbes degrading the textile dyes, the factors affecting biodegradation of dyes was explained, and then the future perspectives was suggested, which provided the reference for the microbial degradation of textile dyes.%纺织染料由于具有毒性、致癌性、致突变、致畸性,其释放必然造成水体和土壤的污染,从而对人类健康和生态系统造成威胁。在过去的三十年里,人类已经意识并注意到纺织染料废水对环境和健康的危害,环境法和各国政府立法已经严格要求这些污染物从工业废水中排出。与物理法和化学法相比较,微生物降解纺织染料具有低成本、高效率、生物友好性和环境兼容性等特点,有可能成为处理染料废液去除染料的唯一有效的方法。本文在总结降解染料微生物种类基础上,说明降解染料的影响因素,进而提出展望,为纺织染料的生物降解提供参考。

  14. Enhanced biodegradation of hydrocarbon-contaminated sediments using microbial fuel cells

    International Nuclear Information System (INIS)

    Highlights: ► One of the 1st studies on sediments MFC-enhanced hydrocarbon degradation. ► MFCs realizes close-to-aerobic biodegradation in anaerobic sediments. ► MFC-enhanced in situ biodegradation is 12× fold of the background sediments. ► Wicking electrode design increases DO in sediments while enhancing degradation. ► Results offers a passive, effective remedy for cleaning HC contaminated sediments. - Abstract: A sediment microbial fuel cell (MFC) was tested to determine if electron transfer from the anaerobic zone of contaminated sediments to the overlying aerobic water could facilitate an enhanced and aerobic equivalent degradation of total petroleum hydrocarbons (TPH). Results indicate that voltages as high as 190 mV (2162 mW/m3) were achieved in a sediment MFC with an anode buried in sediments containing TPH concentrations at approximately 16,000 mg kg−1. Additionally, after approximately 66 days, the TPH degradation rates were 2% and 24% in the open-circuit control sediment MFC and active sediment MFC, respectively. Therefore, it appears that applying MFC technology to contaminated sediments enhances natural biodegradation by nearly 12 fold. Additionally, a novel sediment MFC was designed to provide a cost-effective method of passive oxidation or indirect aerobic degradation of contaminants in an otherwise anaerobic environment. In addition, the use of a wicking air cathode in this study maintained dissolved oxygen concentrations 1–2 mg l−1 higher than submerged cathodes, demonstrating that this technology can be applied to environments with either aerobic or anaerobic overlying water and an anaerobic matrix, such as shallow lagoon, ponds, and marshes, and groundwater.

  15. Simultaneous processes of electricity generation and ceftriaxone sodium degradation in an air-cathode single chamber microbial fuel cell

    Science.gov (United States)

    Wen, Qing; Kong, Fanying; Zheng, Hongtao; Yin, Jinling; Cao, Dianxue; Ren, Yueming; Wang, Guiling

    2011-03-01

    A single chamber microbial fuel cell (MFC) with an air-cathode is successfully demonstrated using glucose-ceftriaxone sodium mixtures or ceftriaxone sodium as fuel. Results show that the ceftriaxone sodium can be biodegraded and produce electricity simultaneously. Interestingly, these ceftriaxone sodium-glucose mixtures play an active role in production of electricity. The maximum power density is increased in comparison to 1000 mg L-1 glucose (19 W m-3) by 495% for 50 mg L-1 ceftriaxone sodium + 1000 mg L-1 glucose (113 W m-3), while the maximum power density is 11 W m-3 using 50 mg L-1 ceftriaxone sodium as the sole fuel. Moreover, ceftriaxone sodium biodegradation rate reaches 91% within 24 h using the MFC in comparison with 51% using the traditional anaerobic reactor. These results indicate that some toxic and bio-refractory organics such as antibiotic wastewater might be suitable resources for electricity generation using the MFC technology.

  16. Colloid-based multiplexed method for screening plant biomass-degrading glycoside hydrolase activities in microbial communities

    Energy Technology Data Exchange (ETDEWEB)

    Reindl, W.; Deng, K.; Gladden, J.M.; Cheng, G.; Wong, A.; Singer, S.W.; Singh, S.; Lee, J.-C.; Yao, J.-S.; Hazen, T.C.; Singh, A.K; Simmons, B.A.; Adams, P.D.; Northen, T.R.

    2011-05-01

    The enzymatic hydrolysis of long-chain polysaccharides is a crucial step in the conversion of biomass to lignocellulosic biofuels. The identification and characterization of optimal glycoside hydrolases is dependent on enzyme activity assays, however existing methods are limited in terms of compatibility with a broad range of reaction conditions, sample complexity, and especially multiplexity. The method we present is a multiplexed approach based on Nanostructure-Initiator Mass Spectrometry (NIMS) that allowed studying several glycolytic activities in parallel under diverse assay conditions. Although the substrate analogs carried a highly hydrophobic perfluorinated tag, assays could be performed in aqueous solutions due colloid formation of the substrate molecules. We first validated our method by analyzing known {beta}-glucosidase and {beta}-xylosidase activities in single and parallel assay setups, followed by the identification and characterization of yet unknown glycoside hydrolase activities in microbial communities.

  17. [Anaerobic-aerobic infection in acute appendicitis].

    Science.gov (United States)

    Mamchich, V I; Ulitovskiĭ, I V; Savich, E I; Znamenskiĭ, V A; Beliaeva, O A

    1998-01-01

    362 patients with acute appendicitis (AA) were examined. For microbiological diagnosis of aerobic and anaerobic nonclostridial microflora we used complex accelerated methods (including evaluation of gram-negative microorganisms in comparison with tinctorial-fermentative method of differential staining according to oxygen sensitivity of catalasopositive together with aerobic and cathalasonegative anaerobic microorganisms) as well as complete bacteriologic examination with determination of sensitivity of the above microorganism to antimicrobial remedies. High rate of aerobic-anaerobic microbial associations and substantial identity of microflora from appendicis and exudate from abdominal cavity was revealed, which evidenced the leading role of endogenous microorganisms in etiology and pathogenesis of AA and peritonitis i. e. autoinfection. In patients with destructive forms of AA, complicated by peritonitis it is recommended to use the accelerated method of examination of pathologic material as well as the complete scheme of examination with the identification of the isolated microorganisms and the correction of antibiotic treatment. PMID:9511291

  18. Mechanism of Kenaf Retting Using Aerobes

    Institute of Scientific and Technical Information of China (English)

    卢士森; 陈季华; 黄秀宝

    2001-01-01

    The experimental results showed that the duration of microbial retting processing of kenaf fibers by using aerobic microbe was four times shorter than that by using anaerobic microbe. The residual gum percentage,breaking strength, breaking elongation and linear density of aerobic retted kenaf bundle fibers did not show significantly difference with that of anaerobic retted kenaf bundle fibers by ANOVA-Tukey's studentized test at a = 5% except for the softness. The bioenergetic principle and the calculation of the amount of ATP produced during the decomposition processing of kenaf gums were used to explain why the retting duration in the case of using aerobic microbes was much shorter than that of using anaerobic microbes.

  19. Microbial degradation of whole-grain complex carbohydrates and impact on short-chain fatty acids and health.

    Science.gov (United States)

    Bach Knudsen, Knud Erik

    2015-03-01

    Whole-grain cereals have a complex dietary fiber (DF) composition consisting of oligosaccharides (mostly fructans), resistant starch, and nonstarch polysaccharides (NSPs); the most important are arabinoxylans, mixed-linkage β(1,3; 1,4)-d-glucan (β-glucan), and cellulose and the noncarbohydrate polyphenolic ether lignin. The highest concentration of NSPs and lignin is found in the outer cell layers of the grain, and refined flour will consequently be depleted of a large proportion of insoluble DF components. The flow and composition of carbohydrates to the large intestine are directly related to the intake of DF. The type and composition of cereal DF can consequently be used to modulate the microbial composition and activity as well as the production and molar ratios of short-chain fatty acids (SCFAs). Arabinoxylans and β-glucan in whole-grain cereals and cereal ingredients have been shown to augment SCFA production, with the strongest relative effect on butyrate. When arabinoxylans were provided as a concentrate, the effect was only on total SCFA production. Increased SCFA production in the large intestine was shown by the concentration in the portal vein, whereas the impact on the concentration in peripheral blood was less because the majority of propionate and butyrate is cleared in the liver. Active microbial fermentation with increased SCFA production reduced the exposure of potentially toxic compounds to the epithelium, potentially stimulating anorectic hormones and acting as signaling molecules between the gut and the peripheral tissues. The latter can have implications for insulin sensitivity and glucose homeostasis. PMID:25770259

  20. PHA Production in Aerobic Mixed Microbial Cultures

    NARCIS (Netherlands)

    Johnson, K.

    2010-01-01

    Polyhydroxyalkanoate (PHA) is a common intracellular energy and carbon storage material in bacteria, which is considered as a bioplastic due to its plastic like properties. PHAs are versatile materials which are biodegradable and made from renewable resources. Commercial production of PHAs is curren

  1. Ecogenomics of microbial communities in bioremediation of chlorinated contaminated sites

    Directory of Open Access Journals (Sweden)

    Farai Maphosa

    2012-10-01

    Full Text Available Organohalide compounds such as chloroethenes, chloroethanes and polychlorinated benzenes are among the most significant pollutants in the world. These compounds are often found in contamination plumes with other pollutants such as solvents, pesticides and petroleum derivatives. Microbial bioremediation of contaminated sites, has become commonplace whereby key processes involved in bioremediation include anaerobic degradation and transformation of these organohalides by organohalide respiring bacteria and also via hydrolytic, oxygenic and reductive mechanisms by aerobic bacteria. Microbial ecogenomics has enabled us to not only study the microbiology involved in these complex processes but also develop tools to better monitor and assess these sites during bioremediation. Microbial ecogenomics have capitalized on recent advances in high-throughput and -output genomics technologies in combination with microbial physiology studies to address these complex bioremediation problems at a system level. Advances in environmental metagenomics, transcriptomics and proteomics have provided insights into key genes and their regulation in the environment. They have also given us clues into microbial community structures, dynamics and functions at contaminated sites. These techniques have not only aided us in understanding the lifestyles of common organohalide respirers, for example Dehalococcoides, Dehalobacter and Desulfitobacterium, but also provided insights into novel and yet uncultured microorganisms found in organohalide respiring consortia. In this paper we look at how ecogenomic studies have aided us to understand the microbial structures and functions in response to environmental stimuli such as the presence of chlorinated pollutants.

  2. Microbial processes in the final repository, the silo part. Theoretical approach and preliminary experiments on the biodegradation of bitumen. Part 1

    International Nuclear Information System (INIS)

    On Commission of SKBF/KBS the microbial processes that are likely to occur in the silo part of SFR, the final repository for medium- and low-level nuclear wastes, have been put together. The experimental studies concerning microbial degradation of bitumen are described. From a microbial point of view it is the biodegradation of bitumen that constitutes the greatest risk in the silo part of SFR. The degradation, aerobic as well as anaerobic, leads to production of carbon dioxide which might cause a decrease in pH to such an extent that hydrogen-gas producing corrosion of metal could occur. This production of gas can cause an increase in internal pressure of the repository. A culture of bacteria able to degrade bitumen aerobically has been enriched. Uptil now no culture degrading bitumen under anaerobic conditions have been obtained. When making a risk assessment of the SFR at the present time it is not possible to completely disregard the microbial activity. An account is also given for some international contacts in this area. 11 references

  3. Research progress on microbial degradation of triazole fungicides%微生物降解三唑类杀菌剂研究进展

    Institute of Scientific and Technical Information of China (English)

    田春燕; 徐军; 董丰收; 刘新刚; 吴小虎; 郑永权

    2016-01-01

    三唑类杀菌剂因具有高效、低毒的特性已在中国得到广泛使用,但同时也因其残留期较长、易污染土壤而备受关注。微生物降解被认为是修复被污染土壤的有效措施。文章从降解三唑类杀菌剂的微生物种类、降解机理及影响微生物降解的因素等方面进行了综述,同时指出,目前有关微生物降解三唑类杀菌剂的研究多数仅限于降解菌的筛选及影响降解的因素分析等方面,对于三唑类杀菌剂的微生物代谢途径、降解过程中起关键作用的酶和基因,以及对手性三唑类杀菌剂的对映体选择性降解机制等机理方面的研究仍较少,相关研究有待进一步加强。%Given their high efficiency and low toxicity triazole fungicides are wildly used in our country. However, they have raised much concern because of their long persistence and easy pollution to soil. Biodegradation is an effective method to triazoles bioremediation, the microbial degradation mechanisms of triazole fungicides by soil microorganisms were reviewed in the current work. In the field of triazole fungicides biodegradation, most of the research has been focused on the screen of the degrading micro-organisms and factors that have influence on the biodegradation. The studies about degradation mechanisms including the metabolic pathway, the enantioselective degradation of triazole fungicides, the key enzymes and the mediated genes in the biodegradation of triazole fungicides was limited. So the above research contents needed to be further studied.

  4. Removal of the pharmaceuticals ibuprofen and iohexol by four wetland plant species in hydroponic culture: plant uptake and microbial degradation.

    Science.gov (United States)

    Zhang, Yang; Lv, Tao; Carvalho, Pedro N; Arias, Carlos A; Chen, Zhanghe; Brix, Hans

    2016-02-01

    We aimed at assessing the effects of four wetland plant species commonly used in constructed wetland systems: Typha, Phragmites, Iris and Juncus for removing ibuprofen (IBU) and iohexol (IOH) from spiked culture solution and exploring the mechanisms responsible for the removal. IBU was nearly completely removed by all plant species during the 24-day experiment, whereas the IOH removal varied between 13 and 80 %. Typha and Phragmites were the most efficient in removing IBU and IOH, respectively, with first-order removal rate constants of 0.38 and 0.06 day(-1), respectively. The pharmaceuticals were taken up by the roots and translocated to the aerial tissues. However, at the end of the experiment, plant accumulation constituted only up to 1.1 and 5.7 % of the amount of IBU and IOH spiked initially. The data suggest that the plants mainly function by facilitating pharmaceutical degradation in the rhizosphere through release of root exudates.

  5. Microbial disinfection of water with endotoxin degradation by photocatalysis using Ag@TiO2 core shell nanoparticles.

    Science.gov (United States)

    S, Sreeja; K, Vidya Shetty

    2016-09-01

    The studies on photocatalytic disinfection of water contaminated with Escherichia coli using Ag core and TiO2 shell (Ag@TiO2) nanoparticles under UV irradiation showed that these nanoparticles are very efficient in water disinfection both in their free and immobilised form. Complete disinfection of 40 × 10(8) CFU/mL could be achieved in 60 min with 0.4 g/L catalyst loading and in 35 min with 1 g/L catalyst loading. Ag@TiO2 nanoparticles were found to be superior to TiO2 nanoparticles in photocatalytic disinfection of water. Kinetics of disinfection followed Chick's law, and the pseudo-first-order rate constant was 0.0168 min(-1) for a catalyst loading of 0.1 g/L. Disinfection of water and degradation of endotoxins (harmful disinfection residual) occurred simultaneously during photocatalysis thereby making the treated water safe for use. Endotoxin degradation showed a shifting order of kinetics. The rate of photocatalysis with nanoparticles immobilised in cellulose acetate film was marginally lower as compared to that of free nanoparticles. Negligible Ag ion leakage and re-growth of cells post-photo-catalytic treatment of water confirmed that complete disintegration of E. coli occurred during photocatalysis making the treated water safe for use. Therefore, Ag@TiO2 nanoparticles have a potential for large-scale application in drinking water treatment plants and household purification units.

  6. Enhanced in situ aerobic bioremediation

    Energy Technology Data Exchange (ETDEWEB)

    Sharfe, K. [CleanEARTH Solutions Ltd., Concord, ON (Canada)

    2007-07-01

    An enhanced in situ aerobic bioremediation process was described. The process used microbe supporting emulsifications to enhance bioavailability as well as to attenuate microbe competition and boost microbial production. Microbes were added prior to application and rapidly initiated bioremediation once applied to impacted areas. The microbe supporting emulsifiers were metabolically active. The study showed that exposed surface areas increased as hydrocarbon masses were divided, which in turn increased the water/substrate interface where microbial action occurred. Nutrients were used to ensure that crowding and waste accumulation were attenuated in order to ensure that the speed of growth and reproduction progressed exponentially. Water-carrying bacteria, enzymes and nutrients were adsorbed to the soil's particle surface and then diffused between particles. The sequestered hydrocarbons were then emulsified and removed in order to be bioremediated. It was concluded that biological catalysts were used to increase microbial activity and to trigger anabolic responses in microbes. Details of a biocatalyst laboratory solution analysis were also included. tabs., figs.

  7. Biodegradation of microbial and synthetic polyesters by fungi.

    Science.gov (United States)

    Kim, D Y; Rhee, Y H

    2003-05-01

    A variety of biodegradable polyesters have been developed in order to obtain useful biomaterials and to reduce the impact of environmental pollution caused by the large-scale accumulation of non-degradable waste plastics. Polyhydroxyalkanoates, poly(epsilon-caprolactone), poly( l-lactide), and both aliphatic and aromatic polyalkylene dicarboxylic acids are examples of biodegradable polyesters. In general, most aliphatic polyesters are readily mineralized by a number of aerobic and anaerobic microorganisms that are widely distributed in nature. However, aromatic polyesters are more resistant to microbial attack than aliphatic polyesters. The fungal biomass in soils generally exceeds the bacterial biomass and thus it is likely that fungi may play a considerable role in degrading polyesters, just as they predominantly perform the decomposition of organic matter in the soil ecosystem. However, in contrast to bacterial polyester degradation, which has been extensively investigated, the microbiological and environmental aspects of fungal degradation of polyesters are unclear. This review reports recent advances in our knowledge of the fungal degradation of microbial and synthetic polyesters and discusses the ecological importance and contribution of fungi in the biological recycling of waste polymeric materials in the biosphere. PMID:12743758

  8. Anaerobic degradation of 1,1,2,2-tetrachloroethane and association with microbial communities in a freshwater tidal wetland, Aberdeen Proving Ground, Maryland : laboratory experiments and comparisons to field data

    Science.gov (United States)

    Lorah, Michelle M.; Voytek, Mary A.; Kirshtein, Julie D.; Jones, Elizabeth J.

    2003-01-01

    Defining biodegradation rates and processes is a critical part of assessing the feasibility of monitored natural attenuation as a remediation method for ground water containing organic contaminants. During 1998?2001, the U.S. Geological Survey conducted a microbial study at a freshwater tidal wetland along the West Branch Canal Creek, Aberdeen Proving Ground, Maryland, as part of an investigation of natural attenuation of chlorinated volatile organic compounds (VOCs) in the wetland sediments. Geochemical analyses and molecular biology techniques were used to investigate factors controlling anaerobic degradation of 1,1,2,2-tetrachloroethane (TeCA), and to characterize the microbial communities that potentially are important in its degradation. Rapid TeCA and daughter product degradation observed in laboratory experiments and estimated with field data confirm that natural attenuation is a feasible remediation method at this site. The diverse microbial community that seems to be involved in TeCA degradation in the wetland sediments varies with changing spatial and seasonal conditions, allowing continued effective natural attenuation throughout the year. Rates of TeCA degradation in anaerobic microcosm experiments conducted with wetland sediment collected from two different sites (WB23 and WB30) and during three different seasons (March?April 1999, July?August 1999, and October?November 2000) showed little spatial variability but high seasonal variability. Initial first-order degradation rate constants for TeCA ranged from 0.10?0.01 to 0.16?0.05 per day (half-lives of 4.3 to 6.9 days) for March?April 1999 and October?November 2000 microcosms incubated at 19 degrees Celsius, whereas lower rate constants of 0 ? 0.03 and 0.06 ? 0.03 per day were obtained in July?August 1999 microcosms incubated at 19 degrees Celsius. Microbial community profiles showed that low microbial biomass and microbial diversity in the summer, possibly due to competition for nutrients by the

  9. Atividade microbiana em um Latossolo degradado tratado com lodo de esgoto Microbial activity in a degraded Latosol treated with sewage sludge

    Directory of Open Access Journals (Sweden)

    Gilberto Colodro

    2007-04-01

    Full Text Available Em geral, os solos degradados se apresentam com fraca atividade biológica, tendo em vista suas características físicas, baixa fertilidade e teores de matéria orgânica, devido principalmente à remoção ou degradação de sua camada superficial. O elevado teor de matéria orgânica facilmente decomposta do lodo de esgoto, que é uma fonte alternativa de resíduos orgânicos, aliado à sua elevada taxa dos principais elementos nutrientes às plantas, pode ser um fator importante do retorno ou incremento da atividade biológica dos solos degradados. Com a finalidade de se estudar as ações do lodo de esgoto na recuperação de um Latossolo degradado, utilizaram-se, como indicadores dos efeitos, o carbono na biomassa microbiana (Cmic, o carbono do CO2 (C-CO2 liberado e a relação entre o carbono microbiano e o carbono orgânico (Cmic/Corg; para isto, foram definidas duas doses de lodo de esgoto aplicadas em cobertura e incorporada, de 30 e 60 Mg ha-1 à base seca, juntamente com um tratamento com fertilizante mineral, utilizando-se o eucalipto como cultura teste. O delineamento experimental foi o inteiramente casualizado, com 4 tratamentos e 4 repetições. O lodo de esgoto promove aumento do C-CO2 liberado e do Cmic, os quais constituem indicativos de qualidade adequados ao monitoramento da recuperação do solo.The degraded soil shows, in general, poor biological activity, considering its physical characteristics, low fertility and organic matter, mainly due to removal or degradation of its superficial layer. The sewage sludge, due to its high content of easily decomposed organic matter can be an alternate source of organic residues and combined to its high content of the principal nutrients for the plants can be an important factor to promote biological activities in degraded soil. In order to study the actions of the sewage sludge in the recovery of a degraded Latosol, the carbon in the microbial biomass (Cmic, the carbon released CO2 (C

  10. Numerical simulation of competitive aerobic / anaerobic hydrocarbon plume biodegradation in two-dimensional bench scale lab-experiments

    Science.gov (United States)

    Beyer, C.; Ballarini, E.; Bauer, R.; Griebler, C.; Bauer, S.

    2011-12-01

    The biodegradation of oxidizable hydrocarbon contaminants in the subsurface requires the presence of compatible microbial communities as well as sufficient amounts of electron acceptors and nutrients. In this context, transverse mixing, driven by dispersion and diffusion, is one of the main mechanisms governing the availability of dissolved electron acceptors at a hydrocarbon plume fringe. Aerobic and anaerobic biodegradation of hydrocarbons limited by transverse mixing has been studied experimentally in 2D bench-scale flow-through tanks, filled with a saturated porous medium. Flow of groundwater through the tanks was induced by pumping water at one side through injection ports, and simultaneously extracting water at the other side of the tank. An ethylbenzene plume was established by injection through the central inlet port. A mixture of unlabeled and fully deuterium-labeled isotopomers was used in order to investigate the spatial distribution of degradation processes via monitoring of compound-specific stable isotope fractionation. In the first phase of the experiment, aerobic biodegradation was studied. For this purpose, the tank was recharged with water containing oxygen as a dissolved electron acceptor and the aerobic strain Pseudomonas putida F1 was inoculated. Later, nitrate was added to the recharge water as an additional electron acceptor and the denitrifying strain Aromatoleum aromaticum EbN1 was amended to study competitive aerobic/anaerobic biodegradation. A numerical reactive transport model of the experiment was set up for a model based interpretation of the observed degradation patterns. In a sensitivity analysis, the influence of the relevant hydrodynamic parameters on the observable distributions of ethylbenzene isotopomers, oxygen and nitrate was studied. Subsequent model calibration allowed for a good agreement with ethylbenzene concentrations measured at the tank outlet ports as well as oxygen concentrations, which were measured at several

  11. Bioaugmentation of sewage sludge with Trametes versicolor in solid-phase biopiles produces degradation of pharmaceuticals and affects microbial communities.

    Science.gov (United States)

    Rodríguez-Rodríguez, Carlos E; Jelić, Aleksandra; Pereira, M Alcina; Sousa, Diana Z; Petrović, Mira; Alves, M Madalena; Barceló, Damià; Caminal, Glòria; Vicent, Teresa

    2012-11-01

    The use of sludge (biosolids) in land application may contribute to the spread of organic micropollutants as wastewater treatments do not completely remove these compounds. Therefore, the development of alternative strategies for sludge treatment is a matter of recent concern. The elimination of pharmaceuticals at pre-existent concentrations from sewage sludge was assessed, for the first time, in nonsterile biopiles by means of fungal bioaugmentation with Trametes versicolor (BTV-systems) and compared with the effect of autochthonous microbiota (NB-systems). The competition between the autochthonous fungal/bacterial communities and T. versicolor was studied using denaturing gradient gel electrophoresis (DGGE) and the cloning/sequencing approach. An inhibitory effect exerted by T. versicolor over bacterial populations was suggested. However, after 21 days, T. versicolor was no longer the main taxon in the fungal communities. The elimination profiles revealed an enhanced removal of atorvastatin-diclofenac-hydrochlorothiazide (during the whole treatment) and ranitidine-fenofibrate (at short periods) in the BTV biopiles in respect to NB biopiles, coincident with the presence of the fungus. For ibuprofen-clarithromycin-furosemide, the elimination profiles were similar irrespective of the system, and with carbamazepine no significant degradation was obtained. The results suggest that a fungal treatment with T. versicolor could be a promising process for the remediation of some pharmaceuticals in complex matrices such as biosolids. PMID:23030544

  12. Microbial diversity and hydrocarbon degrading gene capacity of a crude oil field soil as determined by metagenomics analysis.

    Science.gov (United States)

    Abbasian, Firouz; Palanisami, Thavamani; Megharaj, Mallavarapu; Naidu, Ravi; Lockington, Robin; Ramadass, Kavitha

    2016-05-01

    Soils contaminated with crude oil are rich sources of enzymes suitable for both degradation of hydrocarbons through bioremediation processes and improvement of crude oil during its refining steps. Due to the long term selection, crude oil fields are unique environments for the identification of microorganisms with the ability to produce these enzymes. In this metagenomic study, based on Hiseq Illumina sequencing of samples obtained from a crude oil field and analysis of data on MG-RAST, Actinomycetales (9.8%) were found to be the dominant microorganisms, followed by Rhizobiales (3.3%). Furthermore, several functional genes were found in this study, mostly belong to Actinobacteria (12.35%), which have a role in the metabolism of aliphatic and aromatic hydrocarbons (2.51%), desulfurization (0.03%), element shortage (5.6%), and resistance to heavy metals (1.1%). This information will be useful for assisting in the application of microorganisms in the removal of hydrocarbon contamination and/or for improving the quality of crude oil. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 32:638-648, 2016. PMID:26914145

  13. Microbial diversity and hydrocarbon degrading gene capacity of a crude oil field soil as determined by metagenomics analysis.

    Science.gov (United States)

    Abbasian, Firouz; Palanisami, Thavamani; Megharaj, Mallavarapu; Naidu, Ravi; Lockington, Robin; Ramadass, Kavitha

    2016-05-01

    Soils contaminated with crude oil are rich sources of enzymes suitable for both degradation of hydrocarbons through bioremediation processes and improvement of crude oil during its refining steps. Due to the long term selection, crude oil fields are unique environments for the identification of microorganisms with the ability to produce these enzymes. In this metagenomic study, based on Hiseq Illumina sequencing of samples obtained from a crude oil field and analysis of data on MG-RAST, Actinomycetales (9.8%) were found to be the dominant microorganisms, followed by Rhizobiales (3.3%). Furthermore, several functional genes were found in this study, mostly belong to Actinobacteria (12.35%), which have a role in the metabolism of aliphatic and aromatic hydrocarbons (2.51%), desulfurization (0.03%), element shortage (5.6%), and resistance to heavy metals (1.1%). This information will be useful for assisting in the application of microorganisms in the removal of hydrocarbon contamination and/or for improving the quality of crude oil. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 32:638-648, 2016.

  14. Anaerobic degradation of landfill leachate using an upflow anaerobic fixed-bed reactor with microbial sulfate reduction.

    Science.gov (United States)

    Thabet, Olfa Ben Dhia; Bouallagui, Hassib; Cayol, Jean-luc; Ollivier, Bernard; Fardeau, Marie-Laure; Hamdi, Moktar

    2009-08-15

    This study evaluated the anaerobic degradation of landfill leachate and sulfate reduction as a function of COD/(SO(4)(2-)) ratio in an upflow anaerobic fixed-bed reactor. The reactor, which was inoculated with a mixed consortium, was operated under a constant hydraulic retention time (HRT) of 5 days. We investigated the effect of COD/(SO(4)(2-)) ratio variation on the sulfate reduction efficiency, hydrogen sulfide production, chemical oxygen demand (COD) removal, conductivity, and pH variation. The best reactor performance, with significant sulfate reduction efficiency and COD removal efficiency of 91% and 87%, respectively, was reached under a COD/(SO(4)(2-)) ratio of 1.17. Under these conditions, microscopic analysis showed the abundance of vibrios and rod-shaped bacterial cells. Two anaerobic bacteria were isolated from the reactor sludge. Phylogenetic studies performed on these strains identified strain A1 as affiliated to Clostridium genus and strain H1 as a new species of sulfate-reducing bacteria affiliated to the Desulfovibrio genus. The closest phylogenetic relative of strain H1 was Desulfovibrio desulfuricans, at 96% similarity for partial 16S RNA gene sequence data. Physiological and metabolic characterization was performed for this strain.

  15. Degradation of azo dyes by environmental microorganisms and helminths

    Energy Technology Data Exchange (ETDEWEB)

    Kingthom Chung; Stevens, S.E. Jr. (Memphis State Univ., TN (United States). Dept. of Biology)

    1993-11-01

    The degradation of azo dyes by environmental microorganisms, fungi, and helminths is reviewed. Azo dyes are used in a wide variety of products and can be found in the effluent of most sewage treatment facilities. Substantial quantities of these dyes have been deposited in the environment, particularly in streams and rivers. Azo dyes were shown to affect microbial activities and microbial population sizes in the sediments and in the water columns of aquatic habitats. Only a few aerobic bacteria have been found to reduce azo dyes under aerobic conditions, and little is known about the process. A substantial number of anaerobic bacteria capable of azo dye reduction have been reported. The enzyme responsible for azo dye reduction has been partially purified, and characterization of the enzyme is proceeding. The nematode Ascaris lumbricoides and the cestode Moniezia expanza have been reported to reduce azo dyes anaerobically. Recently the fungus Phanerochaete chrysoporium was reported to mineralize azo dyes via a peroxidation-mediated pathway. A possible degradation pathway for the mineralization of azo dye is proposed and future research needs are discussed.

  16. Influência do nitrogênio degradável no rúmen sobre a degradabilidade in situ, os parâmetros ruminais e a eficiência de síntese microbiana em novilhos alimentados com cana-de-açúcar Ruminal degradable nitrogen for steers fed sugar cane: in situ degradability, ruminal parameters and microbial synthesis efficiency

    Directory of Open Access Journals (Sweden)

    Roselene Nunes da Silveira

    2009-03-01

    Full Text Available Objetivou-se avaliar o efeito da deficiência de nitrogênio degradável no rúmen (NDR, utilizando como volumoso cana-de-açúcar suplementada com uréia, farelo de soja ou farelo de glúten de milho - 60, sobre a eficiência de síntese microbiana e a degradabilidade in situ da matéria seca (MS e da fibra em detergente neutro (FDN em novilhos mestiços. Utilizaram-se oito novilhos canulados no rúmen e duodeno, distribuídos em dois quadrados latinos 4 × 4 e alimentados com cana-de-açúcar e cana-de-açúcar suplementada com uréia, farelo de soja ou farelo de glúten de milho-60. O pH e a concentração de N-NH3 foram mensurados no fluido ruminal antes e 2, 4, 6 e 8 horas após o fornecimento da ração. Utilizou-se a fibra em detergente ácido indigestível como indicador de fluxo duodenal. A eficiência microbiana foi determinada pelas bases purinas.As fontes de proteína degradável no rúmen não influenciaram a degradabilidade da matéria seca, entretanto, o maior valor de degradabilidade efetiva da FDN foi obtido com a cana-de-açúcar com farelo de soja. O pH e a concentração de N-NH3 observados com todas as dietas foram adequados para o crescimento dos microrganismos ruminais. A deficiência de nitrogênio degradável no rúmen não influencia a síntese de proteína microbiana e a dinâmica de fase líquida.The objective of this work was to evaluate the ruminal degradable nitrogen (RDN deficit using as roughage sugar cane supplemented with urea, soybean meal, or corn gluten meal 60 on the microbial synthesis efficiency, in situ dry matter (DM and neutral detergent fiber (NDF degradability. The treatments were: sugar cane, sugar cane with urea, soybean meal or corn gluten meal 60. Eight rumen and duodenum cannulated steers were used and arranged according to two 4 × 4 Latin Squares. The pH and N-NH3 were determined in the ruminal fluid before and 2, 4, 6 and 8 hours after feeding. The duodenal flow was estimated by indigestible

  17. Drying and recovery of aerobic granules.

    Science.gov (United States)

    Hu, Jianjun; Zhang, Quanguo; Chen, Yu-You; Lee, Duu-Jong

    2016-10-01

    To dehydrate aerobic granules to bone-dry form was proposed as a promising option for long-term storage of aerobic granules. This study cultivated aerobic granules with high proteins/polysaccharide ratio and then dried these granules using seven protocols: drying at 37°C, 60°C, 4°C, under sunlight, in dark, in a flowing air stream or in concentrated acetone solutions. All dried granules experienced volume shrinkage of over 80% without major structural breakdown. After three recovery batches, although with loss of part of the volatile suspended solids, all dried granules were restored most of their original size and organic matter degradation capabilities. The strains that can survive over the drying and storage periods were also identified. Once the granules were dried, they can be stored over long period of time, with minimal impact yielded by the applied drying protocols. PMID:27392096

  18. Non-microbial methane formation in oxic soils

    Directory of Open Access Journals (Sweden)

    A. Jugold

    2012-12-01

    Full Text Available Methane plays an important role as a radiatively and chemically active gas in our atmosphere. Until recently, sources of atmospheric methane in the biosphere have been attributed to strictly anaerobic microbial processes during degradation of organic matter. However, a large fraction of methane produced in the anoxic soil layers does not reach the atmosphere due to methanotrophic consumption in the overlaying oxic soil. Although methane fluxes from aerobic soils have been observed, an alternative source other than methanogenesis has not been identified thus far.

    Here we provide evidence for non-microbial methane formation in soils under oxic conditions. We found that soils release methane upon heating and other environmental factors like ultraviolet irradiation, and drying-rewetting cycles. We suggest that chemical formation of methane during degradation of soil organic matter may represent the missing soil source that is needed to fully understand the methane cycle in aerobic soils. Although the emission fluxes are relatively low when compared to those from wetlands, they may be important in warm and wet regions subjected to ultraviolet radiation. We suggest that this methane source is highly sensitive to global change.

  19. Application of {sup 13}C and {sup 15}N stable isotope probing to characterize RDX degrading microbial communities under different electron-accepting conditions

    Energy Technology Data Exchange (ETDEWEB)

    Cho, Kun-Ching; Lee, Do Gyun [Zachry Department of Civil Engineering, Texas A& M University, College Station, TX 77843-3136 (United States); Fuller, Mark E.; Hatzinger, Paul B.; Condee, Charles W. [CB& I Federal Services, Lawrenceville, NJ (United States); Chu, Kung-Hui, E-mail: kchu@civil.tamu.edu [Zachry Department of Civil Engineering, Texas A& M University, College Station, TX 77843-3136 (United States)

    2015-10-30

    Highlights: • SIP characterized RDX-degrading communities under different e-accepting conditions. • Dominant RDX degradation pathways differed under different e-accepting conditions. • More complete detoxification of RDX occurred under methanogenic and sulfate-reducing conditions than under manganese(IV) and iron(III)-reducing conditions. - Abstract: This study identified microorganisms capable of using the explosive hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) or its metabolites as carbon and/or nitrogen sources under different electron-accepting conditions using {sup 13}C and {sup 15}N stable isotope probing (SIP). Mesocosms were constructed using groundwater and aquifer solids from an RDX-contaminated aquifer. The mesocosms received succinate as a carbon source and one of four electron acceptors (nitrate, manganese(IV), iron(III), or sulfate) or no additional electron acceptor (to stimulate methanogenesis). When RDX degradation was observed, subsamples from each mesocosm were removed and amended with {sup 13}C{sub 3}- or ring-{sup 15}N{sub 3}-, nitro-{sup 15}N{sub 3}-, or fully-labeled {sup 15}N{sub 6}-RDX, followed by additional incubation and isolation of labeled nucleic acids. A total of fifteen 16S rRNA sequences, clustering in α- and γ-Proteobacteria, Clostridia, and Actinobacteria, were detected in the {sup 13}C-DNA fractions. A total of twenty seven sequences were derived from different {sup 15}N-DNA fractions, with the sequences clustered in α- and γ-Proteobacteria, and Clostridia. Interestingly, sequences identified as Desulfosporosinus sp. (in the Clostridia) were not only observed to incorporate the labeled {sup 13}C or {sup 15}N from labeled RDX, but also were detected under each of the different electron-accepting conditions. The data suggest that {sup 13}C- and {sup 15}N-SIP can be used to characterize microbial communities involved in RDX biodegradation, and that the dominant pathway of RDX biodegradation may differ under different

  20. Anaerobic microbial transformations of radioactive wastes in subsurface environments

    Energy Technology Data Exchange (ETDEWEB)

    Francis, A.J.

    1984-01-01

    Radioactive wastes disposed of in subsurface environments contain a variety of radionuclides and organic compounds. Microorganisms play a major role in the transformation of organic and inorganic constituents of the waste and are partly responsible for the problems encountered at the waste disposal sites. These include microbial degradation of waste forms resulting in trench cover subsidence, migration of radionuclides, and production of radioactive gases such as /sup 14/CO/sub 2/, /sup 14/CH/sub 4/, HT, and CH/sub 3/T. Microbial processes involved in solubilization, mobilization, and immobilization of toxic metals under aerobic and anaerobic conditions are reviewed. Complexing agents and several organic acids produced by microbial action affect mobilization of radionuclides and heavy metals from the wastes. Microorganisms play a significant role in the transformation and cycling of tritium in the environment by (i) oxidation of tritium and tritiated methane under aerobic conditions and (ii) production of tritium and tritiated methane from wastes containing tritiated water and organic compounds under anaerobic conditions. 23 references, 2 figures, 2 tables.

  1. Anaerobic microbial transformations of radioactive wastes in subsurface environments

    International Nuclear Information System (INIS)

    Radioactive wastes disposed of in subsurface environments contain a variety of radionuclides and organic compounds. Microorganisms play a major role in the transformation of organic and inorganic constituents of the waste and are partly responsible for the problems encountered at the waste disposal sites. These include microbial degradation of waste forms resulting in trench cover subsidence, migration of radionuclides, and production of radioactive gases such as 14CO2, 14CH4, HT, and CH3T. Microbial processes involved in solubilization, mobilization, and immobilization of toxic metals under aerobic and anaerobic conditions are reviewed. Complexing agents and several organic acids produced by microbial action affect mobilization of radionuclides and heavy metals from the wastes. Microorganisms play a significant role in the transformation and cycling of tritium in the environment by (i) oxidation of tritium and tritiated methane under aerobic conditions and (ii) production of tritium and tritiated methane from wastes containing tritiated water and organic compounds under anaerobic conditions. 23 references, 2 figures, 2 tables

  2. Microbial nitrogen transformation potential in surface run-off leachate from a tropical landfill

    International Nuclear Information System (INIS)

    Highlights: ► Microbial nitrogen transformations can alleviate toxic ammonium discharge. ► Aerobic ammonium oxidation was rate-limiting in Indonesian landfill leachate. ►Organic nitrogen ammonification was most dominant. ► Anaerobic nitrate reduction and ammonium oxidation potential were also high. ► A two-stage aerobic-anaerobic nitrogen removal system needs to be implemented. - Abstract: Ammonium is one of the major toxic compounds and a critical long-term pollutant in landfill leachate. Leachate from the Jatibarang landfill in Semarang, Indonesia, contains ammonium in concentrations ranging from 376 to 929 mg N L−1. The objective of this study was to determine seasonal variation in the potential for organic nitrogen ammonification, aerobic nitrification, anaerobic nitrate reduction and anaerobic ammonium oxidation (anammox) at this landfilling site. Seasonal samples from leachate collection treatment ponds were used as an inoculum to feed synthetic media to determine potential rates of nitrogen transformations. Aerobic ammonium oxidation potential (−1 h−1) was more than a hundred times lower than the anaerobic nitrogen transformation processes and organic nitrogen ammonification, which were of the same order of magnitude. Anaerobic nitrate oxidation did not proceed beyond nitrite; isolates grown with nitrate as electron acceptor did not degrade nitrite further. Effects of season were only observed for aerobic nitrification and anammox, and were relatively minor: rates were up to three times higher in the dry season. To completely remove the excess ammonium from the leachate, we propose a two-stage treatment system to be implemented. Aeration in the first leachate pond would strongly contribute to aerobic ammonium oxidation to nitrate by providing the currently missing oxygen in the anaerobic leachate and allowing for the growth of ammonium oxidisers. In the second pond the remaining ammonium and produced nitrate can be converted by a combination

  3. 降解石油复合微生物菌剂的筛选研究%Study on the Selection of Complex Microbial Inoculants for Petroleum Degradation

    Institute of Scientific and Technical Information of China (English)

    徐宝刚; 金立建; 刘燕

    2013-01-01

    从30个土样中筛选出3株高效原油降解菌株,它们为DCH-16,DCH-19和DCH-20,7天后降油率分别为75.6%,80.3%和73.2%.经鉴定,分别是脂肪酸芽孢杆菌属Alicycolobacillus,芽孢肠状杆菌属Sporomaculum和盐芽孢杆菌属Halobacillus.将此3株高效原油降解菌在原油培养基中进行复合实验,结果表明,在相同条件下复合菌降油效果优于单菌;菌株DCH-19与DCH-20复合的最佳原油降解条件为:接种量比1∶1(总接种量为10%),pH值为7.5,底物浓度20mg· mL-1,温度35℃,原油降解时间为7天.将实验复筛所得部分降油菌用于胜华炼厂废水处理,效果最好的是菌DCH-19和DCH-20的复合,处理两天后降油率达到80.2%.表明复合菌株DCH-19和DCH-20有很强的适应能力.%We select three strains of high efficient oil degrading strains from 30 soil samples,i.e.the DCH-16,DCH-19 and DCH-20.Seven days later,the oil degradation rate turns to 75.6%,80.3% and 73.2%.The three strains are identified as the fatty acid bacillus Alicycolobacillus,Bacillus Sporomaculum and Bacillus Halobacilhis.Thereafter,we use the three strains of high efficient degradation bacteria for the crude oil compound experiments.The result shows that the compound bacteria has much better efficiency than single bacteria,and the optimized condition for DCD-19 and DCH-20 is that:the inoculation ratio gets 1∶1 with total inoculation 10%,the pH value is 7.5,the concentration of substrate is 20mg.mL-1,and the temperature reaches 35℃,then the degradation of crude oil will be 7 days.Further more,we introduce part of the microbial inoculants into the refinery wastewater treatment of Shenghua refinery.The compound DCH-19 and DCH-20 shows the best performance of petroleum degradation which is up to 80.2%.

  4. Simultaneous phenol removal, nitrification and denitrification using microbial fuel cell technology.

    Science.gov (United States)

    Feng, Chunhua; Huang, Liqiao; Yu, Hui; Yi, Xiaoyun; Wei, Chaohai

    2015-06-01

    Here we show that concomitant removal of phenol and nitrogen can be accomplished in a single dual-chamber microbial fuel cell (MFC) reactor, in which the two chambers are separated with an anion-exchange membrane. A series of experiments were performed with ammonium (230 NH4(+)-N mg L(-1)) and phenol (with concentrations varying from 0 to 1400 mg L(-1)) fed to the aerobic cathode chamber of the MFC. Experimental results demonstrated that no apparent inhibitory effect of phenol on the nitrifying reaction was noted even at the phenol concentration up to 600 mg L(-1). For all the experiments, simultaneous nitrification and denitrification was achieved in the MFC. In comparison to the traditional aerobic bioreactor (ABR) and the same MFC run under the open-circuit condition, the MFC reactor allowed less inhibition of nitrification to phenol exposure and higher rate of nitrogen removal. The data of bacterial analysis revealed that electrochemically active bacteria and denitrifiers in the anaerobic chamber play a significant role in electricity generation and anaerobic denitrification, respectively, while phenol-degrading bacteria, nitrifiers, and denitrifiers in the aerobic cathode chamber are responsible for phenol oxidation, aerobic nitrification and aerobic denitrification, respectively. These results imply that the MFC holds potential for simultaneous removal of phenolic compounds and nitrogen contained in some particular industrial wastewaters.

  5. Physical injury stimulates aerobic methane emissions from terrestrial plants

    Directory of Open Access Journals (Sweden)

    Z.-P. Wang

    2009-04-01

    Full Text Available Physical injury is common in terrestrial plants as a result of grazing, harvesting, trampling, and extreme weather events. Previous studies demonstrated enhanced emission of non-microbial CH4 under aerobic conditions from plant tissues when they were exposed to increasing UV radiation and temperature. Since physical injury is also a form of environmental stress, we sought to determine whether it would also affect CH4 emissions from plants. Physical injury (cutting stimulated CH4 emission from fresh twigs of Artemisia species under aerobic conditions. More cutting resulted in more CH4 emissions. Hypoxia also enhanced CH4 emission from both uncut and cut Artemisia frigida twigs. Physical injury typically results in cell wall degradation, which may either stimulate formation of reactive oxygen species (ROS or decrease scavenging of them. Increased ROS activity might explain increased CH4 emission in response to physical injury and other forms of stress. There were significant differences in CH4 emissions among 10 species of Artemisia, with some species emitting no detectable CH4 under any circumstances. Consequently, CH4 emissions may be species-dependent and therefore difficult to estimate in nature based on total plant biomass. Our results and