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Sample records for aequorin-expressing mesorhizobium loti

  1. Structure of Mesorhizobium loti arylamine N-acetyltransferase 1

    International Nuclear Information System (INIS)

    The crystal structure of a M. loti arylamine N-acetyltransferase 1 has been determined at 2.0 Å resolution. The arylamine N-acetyltransferase (NAT) enzymes have been found in a broad range of both eukaryotic and prokaryotic organisms. The NAT enzymes catalyse the transfer of an acetyl group from acetyl Co-enzyme A onto the terminal nitrogen of a range of arylamine, hydrazine and arylhydrazine compounds. Recently, several NAT structures have been reported from different prokaryotic sources including Salmonella typhimurium, Mycobacterium smegmatis and Pseudomonas aeruginosa. Bioinformatics analysis of the Mesorhizobium loti genome revealed two NAT paralogues, the first example of multiple NAT isoenzymes in a eubacterial organism. The M. loti NAT 1 enzyme was recombinantly expressed and purified for X-ray crystallographic studies. The purified enzyme was crystallized in 0.5 M Ca(OAc)2, 16% PEG 3350, 0.1 M Tris–HCl pH 8.5 using the sitting-drop vapour-diffusion method. A data set diffracting to 2.0 Å was collected from a single crystal at 100 K. The crystal belongs to the orthorhombic spacegroup P212121, with unit-cell parameters a = 53.2, b = 97.3, c = 114.3 Å. The structure was refined to a final free-R factor of 24.8%. The structure reveals that despite low sequence homology, M. loti NAT1 shares the common fold as reported in previous NAT structures and exhibits the same catalytic triad of residues (Cys-His-Asp) in the active site

  2. Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain NZP2037

    DEFF Research Database (Denmark)

    Kelly, Simon; Sullivan, John; Ronson, Clive;

    2014-01-01

    Mesorhizobium loti strain NZP2037 was isolated in 1961 in Palmerston North, New Zealand from a Lotus divaricatus root nodule. Compared to most other M. loti strains, it has a broad host range and is one of very few M. loti strains able to form effective nodules on the agriculturally important leg....... This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project....... legume Lotus pedunculatus. NZP2037 is an aerobic, Gram negative, non-spore-forming rod. This report reveals that the genome of M. loti strain NZP2037 does not harbor any plasmids and contains a single scaffold of size 7,462,792 bp which encodes 7,318 protein-coding genes and 70 RNA-only encoding genes...

  3. Characterization of a periplasmic S1-like nuclease coded by the Mesorhizobium loti symbiosis island

    International Nuclear Information System (INIS)

    DNA sequences encoding hypothetical proteins homologous to S1 nuclease from Aspergillus oryzae are found in many organisms including fungi, plants, pathogenic bacteria, and eukaryotic parasites. One of these is the M1 nuclease of Mesorhizobium loti which we demonstrate herein to be an enzymatically active, soluble, and stable S1 homolog that lacks the extensive mannosyl-glycosylation found in eukaryotic S1 nuclease homologs. We have expressed the cloned M1 protein in M. loti and purified recombinant native M1 to near homogeneity and have also isolated a homogeneous M1 carboxy-terminal hexahistidine tag fusion protein. Mass spectrometry and N-terminal Edman degradation sequencing confirmed the protein identity. The enzymatic properties of the purified M1 nuclease are similar to those of S1. At acidic pH M1 is 25 times more active on single-stranded DNA than on double-stranded DNA and 3 times more active on single-stranded DNA than on single-stranded RNA. At neutral pH the RNase activity of M1 exceeds the DNase activity. M1 nicks supercoiled RF-I plasmid DNA and rapidly cuts the phosphodiester bond across from the nick in the resultant relaxed RF-II plasmid DNA. Therefore, M1 represents an active bacterial S1 homolog in spite of great sequence divergence. The biochemical characterization of M1 nuclease supports our sequence alignment that reveals the minimal 21 amino acid residues that are necessarily conserved for the structure and functions of this enzyme family. The ability of M1 to degrade RNA at neutral pH implies previously unappreciated roles of these nucleases in biological systems

  4. Rhizobium leguminosarum symbiovar trifolii, Ensifer numidicus and Mesorhizobium amorphae symbiovar ciceri (or Mesorhizobium loti) are new endosymbiotic bacteria of Lens culinaris Medik.

    Science.gov (United States)

    Sami, Dhaoui; Mokhtar, Rejili; Peter, Mergaert; Mohamed, Mars

    2016-08-01

    A total of 142 rhizobial bacteria were isolated from root nodules of Lens culinaris Medik endemic to Tunisia and they belonged to the species Rhizobium leguminosarum, and for the first time to Ensifer and Mesorhizobium, genera never previously described as microsymbionts of lentil. Phenotypically, our results indicate that L. culinaris Medik strains showed heterogenic responses to the different phenotypic features and they effectively nodulated their original host. Based on the concatenation of the 16S rRNA with relevant housekeeping genes (glnA, recA, dnaK), rhizobia that nodulate lentil belonged almost exclusively to the known R. leguminosarum sv. viciae. Interestingly, R. leguminosarum sv. trifolii, Ensifer numidicus (10 isolates) and Mesorhizobium amorphae (or M. loti) (9 isolates) isolates species, not considered, up to now, as a natural symbiont of lentil are reported. The E. numidicus and M. amorphae (or M. loti) strains induced fixing nodules on Medicago sativa and Cicer arietinum host plants, respectively. Symbiotic gene phylogenies showed that the E. numidicus, new symbiont of lentil, markedly diverged from strains of R. leguminosarum, the usual symbionts of lentil, and converged to the symbiovar meliloti so far described within E. meliloti Indeed, the nodC and nodA genes from the M. amorphae showed more than 99% similarity with respect to those from M. mediterraneum, the common chickpea nodulating species, and would be included in the new infrasubspecific division named M. amorphae symbiovar ciceri, or to M. loti, related to the strains able to effectively nodulate C. arietinum host plant. On the basis of these data, R. leguminosarum sv. trifolii (type strain LBg3 (T)), M. loti or M. amorphae sv. ciceri (type strain LB4 (T)) and E. numidicus (type strain LBi2 (T)) are proposed as new symbionts of L. culinaris Medik. PMID:27267929

  5. Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain R7A

    DEFF Research Database (Denmark)

    Kelly, Simon; Sullivan, John; Ronson, Clive; Tian, Rui; Bräu, Lambert; Munk, Christine; Goodwin, Lynne; Han, Cliff; Woyke, Tanja; Reddy, Tatiparthi; Huntemann, Marcel; Pati, Amrita; Mavromatis, Konstantinos; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos; Reeve, Wayne

    2014-01-01

    carried on a 502-kb integrative and conjugative element known as the symbiosis island or ICEMlSym(R7A). M. loti is the microsymbiont of the model legume Lotus japonicus and strain R7A has been used extensively in studies of the plant-microbe interaction. This report reveals that the genome of M. loti...... strain R7A does not harbor any plasmids and contains a single scaffold of size 6,529,530 bp which encodes 6,323 protein-coding genes and 75 RNA-only encoding genes. This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea......-Root Nodule Bacteria (GEBA-RNB) project....

  6. Rhizosphere competent Mesorhizobiumloti MP6 induces root hair curling, inhibits Sclerotinia sclerotiorum and enhances growth of Indian mustard (Brassica campestris Mesorhizobium loti MP6 rizosférico competente induz encurvamento do pelo daraiz, inibe Sclerotinia sclerotiorum e estimula o crescimento de mostarda indiana (Brassica campestris

    Directory of Open Access Journals (Sweden)

    Shikha Chandra

    2007-03-01

    Full Text Available The bacterial strain Mesorhizobium loti MP6, isolated from root nodules of Mimosa pudica induced growth and yield of Brassica campestris. The isolate MP6 secreted hydroxamate type siderophore in Chrom-Azurol Siderophore (CAS agar medium. Production of hydrocyanic acid (HCN, indole acetic acid (IAA and phosphate solubilizing ability was also recorded under normal growth conditions. Root hair curling was observed through simple glass-slide technique. In vitro study showed a significant increase in population of M. loti MP6 in rhizosphere due to root exudates of B. campestris. In dual culture technique the strain showed a strong antagonistic effect against Sclerotinia sclerotiorum, a white rot pathogen of Brassica campestris. The growth of S. sclerotiorum was inhibited by 75% after prolonged incubation. Efficient root colonization of mustard seedlings was confirmed by using a streptomycin-resistant marker M. loti MP6strep+. The M. loti MP6 coated seeds proved enhanced seed germination, early vegetative growth and grain yield as compared to control. Also, a drastic decline (99% in the incidence of white rot was observed due to application of M. loti MP6.A cepa bacteriana Mesorhizobium loti MP6 isolada de nódulos de raiz de Mimosa pudica induziu o crescimento e o rendimento de Brassica campestris. A cepa MP6 secretou sideróforo do tipo hidroxamato em meio sólido Chrom-Azurol Siderophore (CAS. Em condições normais de crescimento, a cepa foi também capaz de produzir de ácido cianídrico (HCN e acido indolacético (AIA e solubilizar fosfato. O encurvamento do pelo da raiz foi observado usando a simples técnica de lâmina e lamínula. Estudos in vitro mostraram um aumento significativo na população de M. loti MP6 na rizosfera devido aos exsudatos de B. campestris. Empregando-se técnica de co-cultura, a cepa mostrou um grande efeito antagônico contra o fungo Sclerotinia sclerotiorum, o patógeno da podridão branca de Brassica campestris. Ap

  7. Elucidation of a novel lipid A α-(1,1)-GalA transferase gene (rgtF) from Mesorhizobium loti: Heterologous expression of rgtF causes Rhizobium etli to synthesize lipid A with α-(1,1)-GalA.

    Science.gov (United States)

    Brown, Dusty B; Muszynski, Artur; Carlson, Russell W

    2013-05-01

    An unusual α-(1,1)-galacturonic acid (GalA) lipid A modification has been reported in the lipopolysaccharide of a number of interesting Gram-negative bacteria, including the nitrogen-fixing bacteria Azospirillum lipoferum, Mesorhizobium huakuii and M. loti, the stalk-forming bacterium Caulobacter crescentus and the hyperthermophilic bacterium Aquifex aeolicus. However, the α-(1,1)-GalA transferase (GalAT) gene, which we have named RgtF, was not identified. Species of the Rhizobium genera produce lipid A with α-(1,4')-GalA but not α-(1,1)-GalA. The Rhizobium GalAT, RgtD, is the lipid A α-(1-4')-GalAT which utilizes the lipid donor dodecaprenyl-phosphate GalA (Dod-P-GalA) for GalA transfer. An additional Rhizobium GalAT, RgtE, is required for the biosynthesis of Dod-P-GalA. We predicted candidate rgtF genes in bacterial species known to produce lipid A with α-(1,1)-GalA. In order to determine the predicted rgtF gene function, we cloned the M. loti rgtF gene into an expression plasmid and introduced that plasmid into Rhizobium etli strains that do not contain the rgtF gene nor produce lipid A α-(1,1)-GalA. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis combined with NMR studies revealed that the lipid As from these rgtF-complemented strains were modified with an additional α-(1,1)-GalA attached to the proximal glucosamine. PMID:23283001

  8. Infection of Lotus japonicus Roots by Mesorhizobium loti

    DEFF Research Database (Denmark)

    Markmann, Katharina; Radutoiu, Elena Simona; Stougaard, Jens

    2012-01-01

    Like the two important crop legumes soybean and common bean, the model legume Lotus japonicus develops determinate root nodules. L. japonicus is normally infected through root hair infection threads in a process closely synchronised with the progressing primordial cell divisions and organ develop...... infection of legumes through direct intercellular epidermal invasion and indicate that this ancient infection process in subsequent evolutionary steps was surpassed by the Nod-factor dependent crack entry and root hair infection thread invasions observed in most extant legumes....... development. Recent studies of symbiotic mutants have however led to a remarkable and unexpected discovery of two alternative intercellular infection modes, crack entry and infection thread independent single cell infection, in L. japonicus. These results provide genetic support for the origin of rhizobial...

  9. The Robotic Super-LOTIS Telescope: Results & Future Plans

    OpenAIRE

    Williams, G. G.; Milne, P. A.; Park, H. S.; Barthelmy, S. D.; Hartmann, D. H.; Updike, A.; Hurley, K.

    2008-01-01

    We provide an overview of the robotic Super-LOTIS (Livermore Optical Transient Imaging System) telescope and present results from gamma-ray burst (GRB) afterglow observations using Super-LOTIS and other Steward Observatory telescopes. The 0.6-m Super-LOTIS telescope is a fully robotic system dedicated to the measurement of prompt and early time optical emission from GRBs. The system began routine operations from its Steward Observatory site atop Kitt Peak in April 2000 and currently operates ...

  10. Novae and Supernovae Searches with the Super-LOTIS Telescope

    Science.gov (United States)

    Williams, G. G.; Park, H. S.; Hartmann, D. H.; Porrata, R. A.

    2000-05-01

    The Super-LOTIS (Livermore Optical Transient Imaging System) telescope is a fully automated robotic telescope dedicated to the search for simultaneous and early-time optical counterparts of gamma-ray bursts (GRBs). Since GRB follow-up observations account for only a small fraction of the Super-LOTIS schedule, the system is available for conducting additional wide-field surveys. Super-LOTIS consists of an f/3.5 60 cm reflector equipped with a prime focus cooled CCD camera. The 2048 x 2048 array yields a total field-of-view of 51' x 51' and a pixel scale of 1.5". This automated system is capable of covering 400 fields (290 sq. deg.) per night to a limiting magnitude of approximately 18.5 (30 s). Super-LOTIS has recently been relocated to Steward Observatory's Kitt Peak site. We will present initial results from a search for novae and supernovae in nearby galaxies.

  11. Super-LOTIS (Livermore Optical Transient Imaging System)

    Science.gov (United States)

    Pérez-Ramírez, D.; Park, H. S.; Williams, G. G.; SuperLOTIS Team

    2004-10-01

    The 0.6-m Super-LOTIS telescope is a fully robotic system dedicated to the search for prompt optical emission from gamma-ray bursts (GRBs). The telescope began routine operations from its Steward Observatory site atop Kitt Peak (KPNO) in April 2000. This system is capable of responding to the Gamma-ray burst Coordinate Network (GCN) triggers within seconds. Together with LOTIS, these systems have been monitoring the GCN real-time data for automatic HETE2 GRB triggers. We will summarize the current capabilities of the system and present recent scientific results.

  12. The Robotic Super-LOTIS Telescope: Results & Future Plans

    Science.gov (United States)

    Williams, G. G.; Milne, P. A.; Park, H. S.; Barthelmy, S. D.; Hartmann, D. H.; Updike, A.; Hurley, K.

    2008-05-01

    We provide an overview of the robotic Super-LOTIS (Livermore Optical Transient Imaging System) telescope and present results from gamma-ray burst (GRB) afterglow observations using Super-LOTIS and other Steward Observatory telescopes. The 0.6-m Super-LOTIS telescope is a fully robotic system dedicated to the measurement of prompt and early time optical emission from GRBs. The system began routine operations from its Steward Observatory site atop Kitt Peak in April 2000 and currently operates every clear night. The telescope is instrumented with an optical CCD camera and a four position filter wheel. It is capable of observing Swift Burst Alert Telescope (BAT) error boxes as early or earlier than the Swift UV/Optical Telescope (UVOT). Super-LOTIS complements the UVOT observations by providing early R- and I-band imaging. We also use the suite of Steward Observatory telescopes including the 1.6-m Kuiper, the 2.3-m Bok, the 6.5-m MMT, and the 8.4-m Large Binocular Telescope to perform follow-up optical and near infrared observations of GRB afterglows. These follow-up observations have traditionally required human intervention but we are currently working to automate the 1.6-m Kuiper telescope to minimize its response time.

  13. The Robotic Super-LOTIS Telescope: Results & Future Plans

    CERN Document Server

    Williams, G G; Park, H S; Barthelmy, S D; Hartmann, D H; Updike, A; Hurley, K

    2008-01-01

    We provide an overview of the robotic Super-LOTIS (Livermore Optical Transient Imaging System) telescope and present results from gamma-ray burst (GRB) afterglow observations using Super-LOTIS and other Steward Observatory telescopes. The 0.6-m Super-LOTIS telescope is a fully robotic system dedicated to the measurement of prompt and early time optical emission from GRBs. The system began routine operations from its Steward Observatory site atop Kitt Peak in April 2000 and currently operates every clear night. The telescope is instrumented with an optical CCD camera and a four position filter wheel. It is capable of observing Swift Burst Alert Telescope (BAT) error boxes as early or earlier than the Swift UV/Optical Telescope (UVOT). Super-LOTIS complements the UVOT observations by providing early R- and I-band imaging. We also use the suite of Steward Observatory telescopes including the 1.6-m Kuiper, the 2.3-m Bok, the 6.5-m MMT, and the 8.4-m Large Binocular Telescope to perform follow-up optical and near ...

  14. Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075

    Energy Technology Data Exchange (ETDEWEB)

    Reeve, Wayne [Murdoch University, Perth, Australia; Nandesena, Kemanthi [Murdoch University, Perth, Australia; YatesIII, John R. [Scripps Research Institute, The, La Jolla, CA; Tiwari, Ravi [Murdoch University, Perth, Australia; O' Hara, Graham [Murdoch University, Perth, Australia; Ninawi, Mohamed [Murdoch University, Perth, Australia; Chertkov, Olga [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Bruce, David [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Tapia, Roxanne [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Nolan, Matt [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Liolios, Konstantinos [U.S. Department of Energy, Joint Genome Institute; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Mavromatis, K [U.S. Department of Energy, Joint Genome Institute; Markowitz, Victor [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Meenakshi, Uma [Murdoch University, Perth, Australia; Howieson, John [Murdoch University, Perth, Australia

    2013-01-01

    Mesorhizobium opportunistum strain WSM2075T was isolated inWestern Australia in 2000 from root nodules of the pasture legume Biserrula pelecinus that had beeninoculated with M. ciceri bv. biserrulae WSM1271. WSM2075T is an aerobic, motile, Gram negative, non-spore-forming rod that has gained the ability to nodulate B. pelecinus but is completely ineffective in N2 fixation with this host. This report reveals thegenome of M. opportunistum strain WSM2075T contains a chromosome ofsize 6,884,444 bp which encodes 6,685 protein-coding genes and 62 RNA-onlyencoding genes. This genome does not contain any plasmids but has a 455.7 kbgenomic island from Mesorhizobium ciceri bv. biserrulae WSM1271 that has been integrated into a phenylalanine-tRNA gene.

  15. Nuevas aportaciones a Deux morceaux de prose de Pierre Loti, de Isaac Albéniz

    Directory of Open Access Journals (Sweden)

    López, Begoña

    2002-12-01

    Full Text Available The discovery of the manuscripts of the two songs based on texts by Pierre Loti, Crépuscule and Tristesse, allow us to conclusively date those compositions, as the place and date of their composition were indicated by Albéniz on each one of the scores: Paris-Auteuil, May 1898. Furthermore, investigations carried out in the composer's private library demonstrate the deep knowledge Albéniz had of Loti's literary work, of which thirteen books exist, among them Pasquala Ivanovitch which contains the text of Crépuscule. We have also discovered that the two songs were dedicated to Olivia de Moyúa.La aparición de los manuscritos de las dos canciones sobre textos de Pierre Loti, Crépuscule y Tristesse, permiten datar definitivamente dichas obras, ya que el lugar y fecha de composición aparecen indicados por Albéniz en cada una de las partituras: Paris-Auteuil, mayo 1898. Asimismo, las investigaciones realizadas en la biblioteca personal del compositor, nos demuestran el conocimiento profundo que de la obra literaria de Loti tenía Albéniz, del que se conservan trece libros, entre ellos Pasquala Ivanovitch del que extrajo el texto de Crépuscule. Hemos podido identificar también a la destinataria de las dos canciones, Olivia de Moyúa.

  16. The Search for Optical and NIR Counterparts of GRBs with the Super-LOTIS Telescope

    Science.gov (United States)

    Williams, G. G.; Park, H. S.; Barthelmy, S.; Hartmann, D.; Lindsay, K.; Bradshaw, M.

    2003-05-01

    The 0.6-m Super-LOTIS (Livermore Optical Transient Imaging System) telescope is a fully robotic system dedicated to the search for prompt optical emission from gamma-ray bursts. The telescope began routine operations from its Steward Observatory site atop Kitt Peak in April 2000. An overview of its predecessors, the GROCSE and LOTIS telescopes, will be presented. We will summarize the current capabilities of the system and present recent scientific results. A progress report will be given on the upgrade of the system to allow for simultaneous near-infrared and optical imaging. This upgrade will be completed to coincide with the launch of the Swift GRB explorer mission in late fall 2003.

  17. Removal of zinc from aqueous solution by metal resistant symbiotic bacterium Mesorhizobium amorphae

    DEFF Research Database (Denmark)

    Hao, Xiuli; Mohamad, Osama Abdalla; Xie, Pin;

    2014-01-01

    Biosorption of zinc by living biomasses of metal resistant symbiotic bacterium Mesorhizobium amorphae CCNWGS0123 was investigated under optimal conditions at pH 5.0, initial metal concentrations of 100 mg L-1, and a dose of 1.0 g L-1. M. amorphae exhibited an efficient removal of Zn2+ from aqueous...

  18. Chemical characterization of the gels produced by the diazotrophic bacteria Rhizobium tropici and Mesorhizobium sp; Caracterizacao quimica dos geis produzidos pelas bacterias diazotroficas Rhizobium tropici e Mesorhizobium sp.

    Energy Technology Data Exchange (ETDEWEB)

    Monteiro, Nilson Kobori [Departamento de Engenharia e Tecnologia de Alimentos, Instituto de Biociencias, Letras e Ciencias Exatas, Universidade Estadual Paulista, Sao Jose do Rio Preto - SP (Brazil); Aranda-Selverio, Gabriel; Exposti, Diego Tadeu Degli; Silva, Maria de Lourdes Corradi da [Departamento de Fisica, Quimica e Biologia, Faculdade de Ciencias e Tecnologia, Universidade Estadual Paulista, Presidente Prudente - SP (Brazil); Lemos, Eliana Gertrudes Macedo; Campanharo, Joao Carlos [Departamento de Tecnologia, Faculdade de Ciencias Agrarias e Veterinaria, Universidade Estadual Paulista, Jaboticabal - SP (Brazil); Silveira, Joana Lea Meira [Departamento de Bioquimica e Biologia Molecular, Universidade Federal do Parana, Curitiba - PR (Brazil)

    2012-07-01

    The exopolysaccharides with characteristics of gel produced by Rhizobium tropici (EPSRT) and Mesorhizobium sp (EPSMR) are acidic heteropolysaccharide composed mainly of glucose and galactose in a molar ratio of 4:1 and 5:1 respectively, with traces of mannose ({approx} 1%). Chemical analysis showed the presence of uronic acid, pyruvate and acetyl-substituents in the structures of both polymers. Experiments of gel permeation chromatography and polyacrylamide gel electrophoresis showed that EPSRT and EPSMR are homogeneous molecules with low grade of polydispersity. The EPS were characterized using spectroscopic techniques of FT-IR, {sup 1}H and {sup 13}C-NMR. (author)

  19. Chemical characterization of the gels produced by the diazotrophic bacteria Rhizobium tropici and Mesorhizobium sp

    International Nuclear Information System (INIS)

    The exopolysaccharides with characteristics of gel produced by Rhizobium tropici (EPSRT) and Mesorhizobium sp (EPSMR) are acidic heteropolysaccharide composed mainly of glucose and galactose in a molar ratio of 4:1 and 5:1 respectively, with traces of mannose (∼ 1%). Chemical analysis showed the presence of uronic acid, pyruvate and acetyl-substituents in the structures of both polymers. Experiments of gel permeation chromatography and polyacrylamide gel electrophoresis showed that EPSRT and EPSMR are homogeneous molecules with low grade of polydispersity. The EPS were characterized using spectroscopic techniques of FT-IR, 1H and 13C-NMR. (author)

  20. Draft Genome Sequence of Plant Growth-Promoting Rhizobium Mesorhizobium amorphae, Isolated from Zinc-Lead Mine Tailings

    OpenAIRE

    Hao, Xiuli; Lin, Yanbing; Johnstone, Laurel; Baltrus, David A; Miller, Susan J.; Wei, Gehong; Rensing, Christopher

    2012-01-01

    Here, we describe the draft genome sequence of Mesorhizobium amorphae strain CCNWGS0123, isolated from nodules of Robinia pseudoacacia growing on zinc-lead mine tailings. A large number of metal(loid) resistance genes, as well as genes reported to promote plant growth, were identified, presenting a great future potential for aiding phytoremediation in metal(loid)-contaminated soil.

  1. Draft Genome Sequence of Plant Growth-Promoting Rhizobium Mesorhizobium amorphae, Isolated from Zinc-Lead Mine Tailings

    Science.gov (United States)

    Hao, Xiuli; Lin, Yanbing; Johnstone, Laurel; Baltrus, David A.; Miller, Susan J.

    2012-01-01

    Here, we describe the draft genome sequence of Mesorhizobium amorphae strain CCNWGS0123, isolated from nodules of Robinia pseudoacacia growing on zinc-lead mine tailings. A large number of metal(loid) resistance genes, as well as genes reported to promote plant growth, were identified, presenting a great future potential for aiding phytoremediation in metal(loid)-contaminated soil. PMID:22247533

  2. The Search for Optical and Near-Infrared Counterparts of GRBs with the Super-LOTIS Telescope

    Science.gov (United States)

    Williams, G. G.; Park, H. S.; Barthelmy, S. D.; Hartmann, D. H.; Hurley, K. C.; Milne, P. A.; Lindsay, K. J.; Bradshaw, M.; Wurtz, R. E.; Wickersham, J.

    2004-09-01

    The 0.6-m Super-LOTIS (Livermore Optical Transient Imaging System) telescope is a fully robotic system dedicated to the search for prompt optical emission from gamma-ray bursts. The telescope began routine operations from its Steward Observatory site atop Kitt Peak in April 2000. We summarize the current capabilities of the system and present some recent scientific results. A progress report is given on the upgrade of the system to allow for simultaneous near-infrared (NIR) and optical imaging. This upgrade will be completed to coincide with the launch of the Swift GRB explorer mission in mid-2004. Swift will have the capability of localizing very high redshift GRBs but absorption by the Ly-α forest prohibits optical detection of z > 5 bursts. NIR observations can detect GRBs out to z ~ 10. Although Swift is a multi-wavelength observatory capable of observing GRBs from the hard x-rays to the optical it has no NIR capability. The upgraded Super-LOTIS telescope will fill this NIR need.

  3. The Search for Optical and Near-Infrared Counterparts of GRBs with the Super-LOTIS Telescope

    International Nuclear Information System (INIS)

    The 0.6-m Super-LOTIS (Livermore Optical Transient Imaging System) telescope is a fully robotic system dedicated to the search for prompt optical emission from gamma-ray bursts. The telescope began routine operations from its Steward Observatory site atop Kitt Peak in April 2000. We summarize the current capabilities of the system and present some recent scientific results. A progress report is given on the upgrade of the system to allow for simultaneous near-infrared (NIR) and optical imaging. This upgrade will be completed to coincide with the launch of the Swift GRB explorer mission in mid-2004. Swift will have the capability of localizing very high redshift GRBs but absorption by the Ly-α forest prohibits optical detection of z > 5 bursts. NIR observations can detect GRBs out to z ∼ 10. Although Swift is a multi-wavelength observatory capable of observing GRBs from the hard x-rays to the optical it has no NIR capability. The upgraded Super-LOTIS telescope will fill this NIR need

  4. Activity of the Recommended and Optimized Rates of Pyridate on Chickpea - Mesorhizobium mediterraneum Symbiosis

    Directory of Open Access Journals (Sweden)

    Mehdi PARSA

    2014-03-01

    Full Text Available Crop-rhizobium symbiosis can be influenced by leaching of herbicides which is unavoidable after their application. Due to an adjuvant which might help to develop the low-use-rate of herbicide, an experiment was carried out to compare the impact of the recommended rate (1200 g active ingredient ha-1 and the optimized rate (282.15 g active ingredient ha-1 of pyridate on the biological properties of eight chickpea cultivars inoculated with Mesorhizobium mediterraneum, grown in pots. Based on the required rate of herbicide to give 95% control of common lambsquarters (Chenopodium album L. value, the efficacy of pyridate improved up to 3.87-fold by adding methylated rapeseed oil to spray solution. The ‘Desi’ cultivar had significantly higher nodulation than ‘Kabuli’ cultivar. In general, toxicity of the recommended rate was higher than the optimized rate. With the exception of root dry weight, all of the measured parameters were significantly affected by the recommended rate of pyridate in varying degrees. The symbiotic properties of chickpea cultivars were affected more than 10% at the recommended dose. The reduced nodulation ranged from 29% to 73% among cultivars exposed to pyridate at the recommended dose. The ‘Desi’ cultivar was more sensitive than the ‘Kabuli’ to the recommended rate of pyridate. We may conclude that effective low-use-rate of pyridate via applying of activator adjuvants should be noted.

  5. NCBI nr-aa BLAST: CBRC-DYAK-01-0032 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-DYAK-01-0032 ref|NP_102978.1| cobalamin synthesis ... protein cobG [Mesorhizobium loti MAFF3030 ... 99] dbj|BAB48764.1| cobalamin synthesis ... protein; CobG [Mesorhizobium loti MAFF303099] NP_1 ...

  6. Adaptation of the symbiotic Mesorhizobium-chickpea relationship to phosphate deficiency relies on reprogramming of whole-plant metabolism.

    Science.gov (United States)

    Nasr Esfahani, Maryam; Kusano, Miyako; Nguyen, Kien Huu; Watanabe, Yasuko; Ha, Chien Van; Saito, Kazuki; Sulieman, Saad; Herrera-Estrella, Luis; Tran, L S

    2016-08-01

    Low inorganic phosphate (Pi) availability is a major constraint for efficient nitrogen fixation in legumes, including chickpea. To elucidate the mechanisms involved in nodule acclimation to low Pi availability, two Mesorhizobium-chickpea associations exhibiting differential symbiotic performances, Mesorhizobium ciceri CP-31 (McCP-31)-chickpea and Mesorhizobium mediterranum SWRI9 (MmSWRI9)-chickpea, were comprehensively studied under both control and low Pi conditions. MmSWRI9-chickpea showed a lower symbiotic efficiency under low Pi availability than McCP-31-chickpea as evidenced by reduced growth parameters and down-regulation of nifD and nifK These differences can be attributed to decline in Pi level in MmSWRI9-induced nodules under low Pi stress, which coincided with up-regulation of several key Pi starvation-responsive genes, and accumulation of asparagine in nodules and the levels of identified amino acids in Pi-deficient leaves of MmSWRI9-inoculated plants exceeding the shoot nitrogen requirement during Pi starvation, indicative of nitrogen feedback inhibition. Conversely, Pi levels increased in nodules of Pi-stressed McCP-31-inoculated plants, because these plants evolved various metabolic and biochemical strategies to maintain nodular Pi homeostasis under Pi deficiency. These adaptations involve the activation of alternative pathways of carbon metabolism, enhanced production and exudation of organic acids from roots into the rhizosphere, and the ability to protect nodule metabolism against Pi deficiency-induced oxidative stress. Collectively, the adaptation of symbiotic efficiency under Pi deficiency resulted from highly coordinated processes with an extensive reprogramming of whole-plant metabolism. The findings of this study will enable us to design effective breeding and genetic engineering strategies to enhance symbiotic efficiency in legume crops. PMID:27450089

  7. Genetic and genomic diversity studies of Acacia symbionts in Senegal reveal new species of Mesorhizobium with a putative geographical pattern.

    Directory of Open Access Journals (Sweden)

    Fatou Diouf

    Full Text Available Acacia senegal (L Willd. and Acacia seyal Del. are highly nitrogen-fixing and moderately salt tolerant species. In this study we focused on the genetic and genomic diversity of Acacia mesorhizobia symbionts from diverse origins in Senegal and investigated possible correlations between the genetic diversity of the strains, their soil of origin, and their tolerance to salinity. We first performed a multi-locus sequence analysis on five markers gene fragments on a collection of 47 mesorhizobia strains of A. senegal and A. seyal from 8 localities. Most of the strains (60% clustered with the M. plurifarium type strain ORS 1032T, while the others form four new clades (MSP1 to MSP4. We sequenced and assembled seven draft genomes: four in the M. plurifarium clade (ORS3356, ORS3365, STM8773 and ORS1032T, one in MSP1 (STM8789, MSP2 (ORS3359 and MSP3 (ORS3324. The average nucleotide identities between these genomes together with the MLSA analysis reveal three new species of Mesorhizobium. A great variability of salt tolerance was found among the strains with a lack of correlation between the genetic diversity of mesorhizobia, their salt tolerance and the soils samples characteristics. A putative geographical pattern of A. senegal symbionts between the dryland north part and the center of Senegal was found, reflecting adaptations to specific local conditions such as the water regime. However, the presence of salt does not seem to be an important structuring factor of Mesorhizobium species.

  8. Crystallization and preliminary X-ray crystallographic studies of β-transaminase from Mesorhizobium sp. strain LUK

    International Nuclear Information System (INIS)

    β-Transaminase from Mesorhizobium sp. strain LUK was crystallized. The crystals were found to belong to the orthorhombic space group C2221, with unit-cell parameters a = 90.91, b = 192.17, c = 52.75 Å. The crystals were obtained at 293 K and diffracted to a resolution of 2.5 Å. β-Transaminase (β-TA) catalyzes the transamination reaction between β-aminocarboxylic acids and keto acids. This enzyme is a particularly suitable candidate for use as a biocatalyst for the asymmetric synthesis of enantiochemically pure β-amino acids for pharmaceutical purposes. The β-TA from Mesorhizobium sp. strain LUK (β-TAMs) belongs to a novel class in that it shows β-transaminase activity with a broad and unique substrate specificity. In this study, β-TAMs was overexpressed in Escherichia coli with an engineered C-terminal His tag. β-TAMs was then purified to homogeneity and crystallized at 293 K. X-ray diffraction data were collected to a resolution of 2.5 Å from a crystal that belonged to the orthorhombic space group C2221, with unit-cell parameters a = 90.91, b = 192.17, c = 52.75 Å

  9. Incompatibility behavior of a symbiotic plasmid pMH7653Rb in Mesorhizobium huakuii 7653R

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    Mesorhizobium huakuii strain 7653R harbored two indigenous plasmids named pMH7653Ra and pMH7653Rb.The larger plasmid pMH7653Rb (symbiotic plasmid) was transferred to M.huakuii HN308SR harboring three plasmids: pMHHN308a,pMHHN308b and pMHHN308c,and HN3015SR harboring three plasmids: pMHHN3015a,pMHHN3015b and pMHHN3015c by tri-parent mating.Two stable indigenous plasmids,pMHHN308b and pMHHN308c of HN308SR,were co-eliminated due to the introduction of pMH7653Rb,and the transconjugant was named HN308SRN14.The results implied that pMH7653Rb and pMHHN308b,pMHHN308c were incompatible and might have been ascribed to the same incompatible group.The plasmid profiles of transconjugant HN3015SRN14 showed that the second largest plasmid pMHHN3015b of HN3015SR was cured due to the introduction of pMH7653Rb.The results also implied that pMH7653Rb and pMHHN3015b were incompatible.Results from plant nodulation tests showed that pMH7653Rb could only maintain the nodulation ability in transconjugant HN308SRN14 and its nodule number was more than that of wild strain HN308SR,but could not replace the nitrogen fixation effect of pMHHN308b and pMHHN308c.The plasmid cured mutant HN308SRN14D harboring only pMHHN308a formed null nodules that demonstrated pMHHN308a was relevant to nodulation ability.HN3015SRN14 harboring pMH7653Rb,pMHHN3015a and pMHHN3015c formed null nodules while HN3015SRN14D containing pMHHN3015a and pMHHN3015c lost the nodulation ability.The plasmid replication repC-like gene sequences were detected by a polymerase chain reaction from 7653R,HN308,HN3015,HN308SRN14 and HN3015SRN14.The repC gene sequence similarities of the strains tested attained 99%.

  10. Symbiotic effectiveness and ecological characterization of indigenous Rhizobium loti populations in Uruguay Eficiência simbiótica e caracterização ecológica de uma população nativa de Rhizobium loti no Uruguai

    Directory of Open Access Journals (Sweden)

    Amalia Baraibar

    1999-06-01

    Full Text Available The objectives of this work were to describe the distribution, density and seasonal variation of the indigenous populations of Rhizobium loti in different Uruguayan soils and to determine the symbiotic effectiveness and stress tolerance factors of different isolates, both with the aim of obtaining selected strains to re-introduce as inoculants in Lotus pastures. R. loti was present in ten soils studied and their densities varied from year to year and within each soil. All the isolates nodulated Lotus corniculatus effectively. The nodules in Lotus pedunculatus and Lotus subbiflorus were small, red on the surface and ineffective in nitrogen fixation. The study of 50 isolates from the ten soils showed high variability in their symbiotic efficiency and tolerance to pH. The indigenous population was acid tolerant in culture medium (pH 4.5, 83% of them could grow at pH 4.5 in 3 days. This work showed that there was a great diversity between the strains of R. loti isolated from Uruguayan soils and supports the importance of selecting among them the most efficient and resistant strains to be included in the inoculants.Os objetivos deste trabalho foram descrever a distribuição, densidade e variação sazonal de populações nativas de Rhizobium loti em diferentes solos uruguaios, e determinar a eficiência simbiótica e os fatores de tolerância a estresse de diversos isolados, tendo em vista a obtenção de cepas a serem reintroduzidas como inoculantes em pastagens de Lotus. Rhizobium loti estava presente em dez solos estudados, e suas densidades variavam de ano para ano e em cada solo. Todos os isolados nodularam efetivamente o Lotus corniculatus. Os nódulos no Lotus pedunculatus e no Lotus subbiflorus eram pequenos, vermelhos na superfície, e ineficazes na fixação de N. O estudo de 50 isolados dos dez solos mostraram alta variabilidade na sua eficiência simbiótica, e alta tolerância ao pH. A população nativa era tolerante à acidez em meio

  11. A synergistic interaction between salt-tolerant Pseudomonas and Mesorhizobium strains improves growth and symbiotic performance of liquorice (Glycyrrhiza uralensis Fish.) under salt stress.

    Science.gov (United States)

    Egamberdieva, Dilfuza; Li, Li; Lindström, Kristina; Räsänen, Leena A

    2016-03-01

    Chinese liquorice (Glycyrrhiza uralensis Fish.) is a salt-tolerant medicinal legume that could be utilized for bioremediation of salt-affected soils. We studied whether co-inoculation of the symbiotic Mesorhizobium sp. strain NWXJ19 or NWXJ31 with the plant growth-promoting Pseudomonas extremorientalis TSAU20 could restore growth, nodulation, and shoot/root nitrogen contents of salt-stressed G. uralensis, which was grown in potting soil and irrigated with 0, 50, and 75 mM NaCl solutions under greenhouse conditions. Irrigation with NaCl solutions clearly retarded the growth of uninoculated liquorice, and the higher the NaCl concentration (75 and 100 mM NaCl), the more adverse is the effect. The two Mesorhizobium strains, added either alone or in combination with P. extremorientalis TSAU20, responded differently to the salt levels used. The strain NWXJ19 was a good symbiont for plants irrigated with 50 mM NaCl, whereas the strain NWXJ31 was more efficient for plants irrigated with water or 75 mM NaCl solution. P. extremorientalis TSAU20 combined with single Mesorhizobium strains alleviated the salt stress of liquorice plants and improved yield and nodule numbers significantly in comparison with single-strain-inoculated liquorice. Both salt stress and inoculation raised the nitrogen content of shoots and roots. The nitrogen contents were at their highest, i.e., 30 and 35 % greater compared to non-stressed uninoculated plants, when plants were inoculated with P. extremorientalis TSAU20 and Mesorhizobium sp. NWXJ31 as well as irrigated with 75 mM NaCl solution. From this study, we conclude that dual inoculation with plant growth-promoting rhizobacteria could be a new approach to improve the tolerance of G. uralensis to salt stress, thereby improving its suitability for the remediation of saline lands. PMID:26585446

  12. Analysis of cellular fatty acids and phenotypic relationships of Agrobacterium, Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium species using the Sherlock microbial identification system

    OpenAIRE

    Tighe, S.W.; de Lajudie, Philippe; Dipietro, K.; Lindström, K.; Nick, G; Jarvis, B. D. W.

    2000-01-01

    Previous studies have demonstrated that cellular fatty acid analysis is a useful tool for identifying unknown strains of rhizobia and establishing taxonomic relationships between the species. In this study, the fatty acid profiles of over 600 strains belonging to the genera #Agrobacterium$, #Bradyrhizobium$, #Mesorhizobium$, #Rhizobium$ and #Sinorhizobium$ were evaluated using the gas-chromatography-based Sherlock Microbial Identification System (MIS). Data collected with the MIS showed that ...

  13. Characterization of pH dependent Mn(II) oxidation strategies and formation of a bixbyite-like phase by Mesorhizobium australicum T-G1

    OpenAIRE

    Tsing eBohu; Santelli, Cara M.; Denise eAkob; Neu, Thomas R.; Valerian eCiobota; Petra eRösch; Juergen ePopp; Sandor eNietzsche; Kirsten eKüsel

    2015-01-01

    Despite the ubiquity of Mn oxides in natural environments, there are only a few observations of biological Mn(II) oxidation at pH < 6. The lack of low pH Mn-oxidizing bacteria (MOB) isolates limits our understanding of how pH influences biological Mn(II) oxidation in extreme environments. Here, we report that a novel MOB isolate, Mesorhizobium australicum strain T-G1, isolated from an acidic and metalliferous uranium mining area, can oxidize Mn(II) at both acidic and neutral pH using differen...

  14. The function of three indigenous plasmids in Mesorhizobium huakuii 2020 and its symbiotic interaction with Sym pJB5JI of Rhizobiurn legurninosarum

    Institute of Scientific and Technical Information of China (English)

    YANG ChengYun; LI YouGuo; WEI Li; CHENG GuoJun; ZHOU JunChu

    2008-01-01

    A Mesorhizobium huakuii strain 2020, isolated from a rice-growing field in southern China, contains three Indigenous plasmids named p2020a, p2020b and p2020c, respectively. The plasmids were deleted via Tn5-sacB insertion, and two cured derivatives were obtained. Interestingly, the mutant 2020D29curing of p2020c could significantly enhance the capacity of symbiotic nitrogen fixation. But the mutant 2020D8 curing of p2020b lost the ability to nodulate Astragalus sinicus. Furthermore, the third plasmid p2020a could be hardly eliminated, suggesting that some house-keeping genes necessary for strain growth located on this plasmid. Then the Sym plasmid pJB5JI of R. leguminosarum bv. viciae was transferred into 2020 and its cured derivatives. The pot plant test showed that the ability of competition and symbiotic nitrogen fixation of transconjugant 2020-137 (pJB5JI) was increased evidently in contrast to 2020. pJB5JI could not restore the ability of 2020D8 to nodulate Astragalus sinicus. 2020D8-8(pJB5JI) could form ineffective nodules on peas, which implied that the symbiotic plasmid pJB5JI could express its function at the chromosomal background of Mesorhizobium huakuii 2020. The plasmid stability was checked in transconjugants under free-living and during symbiosis. The results indicated that pJB5JI failed to be detected in some nodule isolates. That Km resistance gene could be amplified from all transconjugants and nodule isolates suggested that pJB5JI was fully or partially integrated into the chromosome of recipients.

  15. The function of three indigenous plasmids in Mesorhizobium huakuii 2020 and its symbiotic inter-action with Sym pJB5JI of Rhizobium leguminosarum

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    A Mesorhizobium huakuii strain 2020, isolated from a rice-growing field in southern China, contains three indigenous plasmids named p2020a, p2020b and p2020c, respectively. The plasmids were deleted via Tn5-sacB insertion, and two cured derivatives were obtained. Interestingly, the mutant 2020D29 curing of p2020c could significantly enhance the capacity of symbiotic nitrogen fixation. But the mutant 2020D8 curing of p2020b lost the ability to nodulate Astragalus sinicus. Furthermore, the third plasmid p2020a could be hardly eliminated, suggesting that some house-keeping genes necessary for strain growth located on this plasmid. Then the Sym plasmid pJB5JI of R. leguminosarum bv. viciae was transferred into 2020 and its cured derivatives. The pot plant test showed that the ability of competition and symbiotic nitrogen fixation of transconjugant 2020-137 (pJB5JI) was increased evidently in con-trast to 2020. pJB5JI could not restore the ability of 2020D8 to nodulate Astragalus sinicus. 2020D8-8 (pJB5JI) could form ineffective nodules on peas, which implied that the symbiotic plasmid pJB5JI could express its function at the chromosomal background of Mesorhizobium huakuii 2020. The plas-mid stability was checked in transconjugants under free-living and during symbiosis. The results indi-cated that pJB5JI failed to be detected in some nodule isolates. That Km resistance gene could be am-plified from all transconjugants and nodule isolates suggested that pJB5JI was fully or partially inte-grated into the chromosome of recipients.

  16. Capacidad de fijación de nitrógeno de estirpes autóctonas de Mesorhizobium spp. en simbiosis con dos poblaciones mejoradas de Lotus glaber (Miller)

    OpenAIRE

    Iribarne, María; Balagué, Laura J.; Diosma, Gabriela; Balatti, Pedro Alberto

    1998-01-01

    Se evaluó la capacidad de nodulación y fijación de nitrógeno de tres estirpes de Mesorhizobium sp. que fueron aislados de los suelos de la depresión del río Salado, Provincia de Buenos Aires. Estas cepas se inocularon en dos poblaciones mejoradas de Lotus glaber FA2 y FA7. Las cepas autóctonas en simbiosis con las dos poblaciones de Lotus nodularon y fijaron mas nitrógeno que las plantas testigo no inoculadas y que los testigos inoculados con la cepa control USDA3471. Las poblaciones de Lotus...

  17. Characterization of pH dependent Mn(II) oxidation strategies and formation of a bixbyite-like phase by Mesorhizobium australicum T-G1

    Science.gov (United States)

    Bohu, Tsing; Santelli, Cara M; Akob, Denise M.; Neu, Thomas R; Ciobota, Valerian; Rösch, Petra; Popp, Jürgen; Nietzsche, Sándor; Küsel, Kirsten

    2015-01-01

    Despite the ubiquity of Mn oxides in natural environments, there are only a few observations of biological Mn(II) oxidation at pH < 6. The lack of low pH Mn-oxidizing bacteria (MOB) isolates limits our understanding of how pH influences biological Mn(II) oxidation in extreme environments. Here, we report that a novel MOB isolate, Mesorhizobium australicum strain T-G1, isolated from an acidic and metalliferous uranium mining area, can oxidize Mn(II) at both acidic and neutral pH using different enzymatic pathways. X-ray diffraction, Raman spectroscopy, and scanning electron microscopy with energy dispersive X-ray spectroscopy revealed that T-G1 initiated bixbyite-like Mn oxide formation at pH 5.5 which coincided with multi-copper oxidase expression from early exponential phase to late stationary phase. In contrast, reactive oxygen species (ROS), particularly superoxide, appeared to be more important for T-G1 mediated Mn(II) oxidation at neutral pH. ROS was produced in parallel with the occurrence of Mn(II) oxidation at pH 7.2 from early stationary phase. Solid phase Mn oxides did not precipitate, which is consistent with the presence of a high amount of H2O2 and lower activity of catalase in the liquid culture at pH 7.2. Our results show that M. australicum T-G1, an acid tolerant MOB, can initiate Mn(II) oxidation by varying its oxidation mechanisms depending on the pH and may play an important role in low pH manganese biogeochemical cycling.

  18. Characterization of pH dependent Mn(II oxidation strategies and formation of a bixbyite-like phase by Mesorhizobium australicum T-G1

    Directory of Open Access Journals (Sweden)

    Tsing eBohu

    2015-07-01

    Full Text Available Despite the ubiquity of Mn oxides in natural environments, there are only a few observations of biological Mn(II oxidation at pH < 6. The lack of low pH Mn-oxidizing bacteria (MOB isolates limits our understanding of how pH influences biological Mn(II oxidation in extreme environments. Here, we report that a novel MOB isolate, Mesorhizobium australicum strain T-G1, isolated from an acidic and metalliferous uranium mining area, can oxidize Mn(II at both acidic and neutral pH using different enzymatic pathways. X-ray diffraction (XRD, Raman spectroscopy, and scanning electron microscopy with energy dispersive X-ray spectroscopy (SEM-EDS revealed that T-G1 initiated bixbyite-like Mn oxide formation at pH 5.5 which coincided with multi-copper oxidase (MCO expression from early exponential phase to late stationary phase. In contrast, reactive oxygen species (ROS, particularly superoxide, appeared to be more important for T-G1 mediated Mn(II oxidation at neutral pH. ROS was produced in parallel with the occurrence of Mn(II oxidation at pH 7.2 from early stationary phase. Solid phase Mn oxides did not precipitate, which is consistent with the presence of a high amount of H2O2 and lower activity of catalase in the liquid culture at pH 7.2. Our results show that M. australicum T-G1, an acid tolerant MOB, can initiate Mn(II oxidation by varying its oxidation mechanisms depending on the pH and may play an important role in low pH manganese biogeochemical cycling.

  19. Characterization of pH dependent Mn(II) oxidation strategies and formation of a bixbyite-like phase by Mesorhizobium australicum T-G1

    Science.gov (United States)

    Bohu, Tsing; Santelli, Cara M.; Akob, Denise M.; Neu, Thomas R.; Ciobota, Valerian; Rösch, Petra; Popp, Jürgen; Nietzsche, Sándor; Küsel, Kirsten

    2015-01-01

    Despite the ubiquity of Mn oxides in natural environments, there are only a few observations of biological Mn(II) oxidation at pH < 6. The lack of low pH Mn-oxidizing bacteria (MOB) isolates limits our understanding of how pH influences biological Mn(II) oxidation in extreme environments. Here, we report that a novel MOB isolate, Mesorhizobium australicum strain T-G1, isolated from an acidic and metalliferous uranium mining area, can oxidize Mn(II) at both acidic and neutral pH using different enzymatic pathways. X-ray diffraction, Raman spectroscopy, and scanning electron microscopy with energy dispersive X-ray spectroscopy revealed that T-G1 initiated bixbyite-like Mn oxide formation at pH 5.5 which coincided with multi-copper oxidase expression from early exponential phase to late stationary phase. In contrast, reactive oxygen species (ROS), particularly superoxide, appeared to be more important for T-G1 mediated Mn(II) oxidation at neutral pH. ROS was produced in parallel with the occurrence of Mn(II) oxidation at pH 7.2 from early stationary phase. Solid phase Mn oxides did not precipitate, which is consistent with the presence of a high amount of H2O2 and lower activity of catalase in the liquid culture at pH 7.2. Our results show that M. australicum T-G1, an acid tolerant MOB, can initiate Mn(II) oxidation by varying its oxidation mechanisms depending on the pH and may play an important role in low pH manganese biogeochemical cycling. PMID:26236307

  20. Isolation and characterization of two novel bacteria Afipia cberi and Mesorhizobium hominis from blood of a patient afflicted with fatal pulmonary illness.

    Directory of Open Access Journals (Sweden)

    Shyh-Ching Lo

    Full Text Available We recently isolated and discovered new Bradyrhizobiaceae microbes from the cryopreserved culture broth of blood samples from 3 patients with poorly defined illnesses using modified SP4 media and culture conditions coupled with genomic sequencing. Using a similar protocol, we studied a previously cryopreserved culture broth of blood sample from a patient who had succumbed to an acute onset of fulminant pulmonary illness. We report that two phases of microbial growth were observed in the re-initiated culture. Biochemical and genomic characterization revealed microbes isolated from the first phase of growth were new Afipia species of Bradyrhizobiaceae, tentatively named A. cberi with a ~ 5 MB chromosome that was different from those of all previously known Afipia microbes including the newly discovered A. septicemium. The microbes isolated from the second phase of growth were prominent sugar assimilators, novel Phyllobacteriaceae, phylogenetically most closely related to Mesorhizobium and tentatively named M. hominis with a ~ 5.5 MB chromosome. All A. cberi isolates carry a circular ~ 140 KB plasmid. Some M. hominis isolates possess a circular ~ 412 KB plasmid that can be lost in prolonged culture or passage. No antibiotics resistant genes could be identified in both of the A. cberi and M. hominis plasmids. Antibiotic susceptibility studies using broth culture systems revealed isolates of A. cberi could be sensitive to some antibiotics, but all isolates of M. hominis were resistant to essentially all tested antibiotics. However, the cell-free antibiotics susceptibility test results may not be applicable to clinical treatment against the microbes that are known to be capable of intracellular growth. It remains to be determined if the 2 previously unknown Rhizobiales were indeed pathogenic and played a role in the pulmonary disease process in this patient. Specific probes and methods will be developed to re-examine the diseased lungs from patient

  1. Transformation of Rhizobia with Broad-Host-Range Plasmids by Using a Freeze-Thaw Method

    OpenAIRE

    Vincze, Eva; Bowra, Steve

    2006-01-01

    Several species of rhizobia were successfully transformed with broad-host-range plasmids of different replicons by using a modified freeze-thaw method. A generic binary vector (pPZP211) was maintained in Mesorhizobium loti without selection and stably inherited during nodulation. The method could extend the potential of rhizobia as a vehicle for plant transformation.

  2. NCBI nr-aa BLAST: CBRC-TNIG-22-0185 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-TNIG-22-0185 ref|NP_103831.1| putative manganese ... transport protein MntH [Mesorhizobium loti ... MAFF303099] sp|Q98I99|MNTH_RHILO Probable manganese ... transport protein mntH dbj|BAB49617.1| manganese ... t ...

  3. Phylogenetic diversity of Mesorhizobium in chickpea

    Indian Academy of Sciences (India)

    Dong Hyun Kim; Mayank Kaashyap; Abhishek Rathore; Roma R Das; Swathi Parupalli; Hari D Upadhyaya; S Gopalakrishnan; Pooran M Gaur; Sarvjeet Singh; Jagmeet Kaur; Mohammad Yasin; Rajeev K Varshney

    2014-06-01

    Crop domestication, in general, has reduced genetic diversity in cultivated gene pool of chickpea (Cicer arietinum) as compared with wild species (C. reticulatum, C. bijugum). To explore impact of domestication on symbiosis, 10 accessions of chickpeas, including 4 accessions of C. arietinum, and 3 accessions of each of C. reticulatum and C. bijugum species, were selected and DNAs were extracted from their nodules. To distinguish chickpea symbiont, preliminary sequences analysis was attempted with 9 genes (16S rRNA, atpD, dnaJ, glnA, gyrB, nifH, nifK, nodD and recA) of which 3 genes (gyrB, nifK and nodD) were selected based on sufficient sequence diversity for further phylogenetic analysis. Phylogenetic analysis and sequence diversity for 3 genes demonstrated that sequences from C. reticulatum were more diverse. Nodule occupancy by dominant symbiont also indicated that C. reticulatum (60%) could have more various symbionts than cultivated chickpea (80%). The study demonstrated that wild chickpeas (C. reticulatum) could be used for selecting more diverse symbionts in the field conditions and it implies that chickpea domestication affected symbiosis negatively in addition to reducing genetic diversity.

  4. Rhizobial gibberellin negatively regulates host nodule number.

    Science.gov (United States)

    Tatsukami, Yohei; Ueda, Mitsuyoshi

    2016-01-01

    In legume-rhizobia symbiosis, the nodule number is controlled to ensure optimal growth of the host. In Lotus japonicus, the nodule number has been considered to be tightly regulated by host-derived phytohormones and glycopeptides. However, we have discovered a symbiont-derived phytohormonal regulation of nodule number in Mesorhizobium loti. In this study, we found that M. loti synthesized gibberellic acid (GA) under symbiosis. Hosts inoculated with a GA-synthesis-deficient M. loti mutant formed more nodules than those inoculated with the wild-type form at four weeks post inoculation, indicating that GA from already-incorporated rhizobia prevents new nodule formation. Interestingly, the genes for GA synthesis are only found in rhizobial species that inhabit determinate nodules. Our findings suggest that the already-incorporated rhizobia perform GA-associated negative regulation of nodule number to prevent delayed infection by other rhizobia. PMID:27307029

  5. Analysis of Simple Sequence Repeats in Genomes of Rhizobia

    Institute of Scientific and Technical Information of China (English)

    GAO Ya-mei; HAN Yi-qiang; TANG Hui; SUN Dong-mei; WANG Yan-jie; WANG Wei-dong

    2008-01-01

    Simple sequence repeats (SSRs) or microsatellites, as genetic markers, are ubiquitous in genomes of various organisms. The analysis of SSR in rhizobia genome provides useful information for a variety of applications in population genetics of rhizobia. We analyzed the occurrences, relative abundance, and relative density of SSRs, the most common in Bradyrhizobium japonicum, Mesorhizobium loti, and Sinorhizobium meliloti genomes se-quenced in the microorganisms tandem repeats database, and SSRs in the three species genomes were compared with each other. The result showed that there were 1 410, 859, and 638 SSRs in B. japonicum, M. loti, and 5. meliloti genomes, respectively. In the genomes of B. japonicum, M. loti, and 5. meliloti, tetranucleotide, pentanucleotide, and hexanucleotide repeats were more abundant and indicated higher mutation rates in these species. The least abundance was mononucleotide repeat. The SSRs type and distribution were similar among these species.

  6. LysM domains mediate lipochitin-oligosaccharide recognition and Nfr genes extend the symbiotic host range

    DEFF Research Database (Denmark)

    Radutoiu, Simona; Madsen, Lene H; Madsen, Esben B; Jurkiewicz, Anna; Fukai, Eigo; Quistgaard, Esben M H; Albrektsen, Anita S; James, Euan K; Thirup, Søren; Stougaard, Jens

    2007-01-01

    Legume-Rhizobium symbiosis is an example of selective cell recognition controlled by host/non-host determinants. Individual bacterial strains have a distinct host range enabling nodulation of a limited set of legume species and vice versa. We show here that expression of Lotus japonicus Nfr1 and...... Nfr5 Nod-factor receptor genes in Medicago truncatula and L. filicaulis, extends their host range to include bacterial strains, Mesorhizobium loti or DZL, normally infecting L. japonicus. As a result, the symbiotic program is induced, nodules develop and infection threads are formed. Using L...

  7. Dicty_cDB: Contig-U03476-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available RKING DRAFT SEQUE... 40 0.74 5 ( AP009180 ) Candidatus Carsonella ruddii PV DNA, complete gen... 34 0.74 9 (...GS-27-01-01-1... 38 5.4 3 ( AP011071 ) Solanum lycopersicum DNA, chromosome 8, clon...opsis thaliana unknown prote... 183 1e-44 AE016853_3267( AE016853 |pid:none) Pseudomonas ...:none) Mesorhizobium loti MAFF303099 D... 175 2e-42 CP000712_1811( CP000712 |pid:none) Pseudomonas putida...P000050_584( CP000050 |pid:none) Xanthomonas campestris pv. campe... 154 7e-36 CP001001_816( CP001001 |pid:none) Methylobacter

  8. Dicty_cDB: Contig-U06235-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available Contig-U06235-1 no gap 845 2 1966111 1965302 MINUS 4 4 U06235 4 0 0 0 0 0 0 0 0 0 0 0 0 0 Show C ... AM492533 |pid:none) Streptomyces tendae lysolipin bio ... 36 1.4 AP009385_2300( AP009385 |pid:none) Burkh ... _91( AL672114 |pid:none) Mesorhizobium loti R7A symbio sis ... 35 3.1 BX936398_3293( BX936398 |pid:none) Y ...

  9. Lotus japonicus nodulation requires two GRAS domain regulators, one of which is functionally conserved in a non-legume

    DEFF Research Database (Denmark)

    Heckmann, Anne Birgitte Lau; Lombardo, Fabien; Miwa, Hiroki;

    2006-01-01

    A new nodulation-defective mutant of Lotus japonicus does not initiate nodule cortical cell division in response to Mesorhizobium loti, but induces root hair deformation, Nod factor-induced calcium spiking, and mycorrhization. This phenotype, together with mapping data, suggested that the mutation...... could be in the ortholog of the Medicago truncatula NSP1 gene (MtNSP1). The sequence of the orthologous gene (LjNSP1) in the L. japonicus mutant (Ljnsp1-1) revealed a mutation causing a premature stop resulting in loss of the C-terminal 23 amino acids. We also sequenced the NSP2 gene from L. japonicus...

  10. Lotus japonicus nodulation requires two GRAS-domain regulators, NSP1 and NSP2

    DEFF Research Database (Denmark)

    Heckmann, Anne Birgitte Lau; Lombardo, Fabien; Miwa, Hiroki;

    A nodulation-defective mutant of Lotus japonicus does not initiate nodule cortical cell division in response to Mesorhizobium loti, but induces root hair deformation, Nod factor-induced calcium spiking, and mycorrhization. We have shown that this mutant has a premature stop in the NSP1 (Nodulation...... Signalling Pathway 1) gene (Ljnsp1-1) resulting in loss of the C-terminal 23 amino acids (aa) and we recently identified another mutant in NSP1 (Ljnsp1-2) with a truncated protein of 341 aa. Additionally, we have sequenced and isolated a mutant in LjNSP2 (Ljnsp2-3) that has a premature stop codon showing a...

  11. GIPSy

    DEFF Research Database (Denmark)

    Soares, Siomar C; Geyik, Hakan; Ramos, Rommel T J; de Sá, Pablo H C G; Barbosa, Eudes G V; Baumbach, Jan; Figueiredo, Henrique C P; Miyoshi, Anderson; Tauch, Andreas; Silva, Artur; Azevedo, Vasco

    2016-01-01

    sequences, ordinarily known as genomic islands (GEIs). GEIs may harbor genes encoding virulence, metabolism, antibiotic resistance and symbiosis-related functions, namely pathogenicity islands (PAIs), metabolic islands (MIs), resistance islands (RIs) and symbiotic islands (SIs). Although many software for...... in Escherichia coli CFT073; 1 MI for Burkholderia pseudomallei K96243, which seems to be a miscellaneous island; 1 RI of Acinetobacter baumannii AYE, named AbaR1; and, 1 SI of Mesorhizobium loti MAFF303099 presenting a mosaic structure. GIPSy is the first life-style-specific genomic island prediction...

  12. Influence of Rhizobia Inoculation on Biomass Gain and Tissue Nitrogen Content of Leucaena leucocephala Seedlings under Drought

    Directory of Open Access Journals (Sweden)

    Gabriela Pereyra

    2015-10-01

    Full Text Available Anticipated increases in the frequency of heat waves and drought spells may have negative effects on the ability of leguminous trees to fix nitrogen (N. In seedlings of Leucaena leucocephala inoculated with Mesorhizobium loti or Rhizobium tropici, we investigated how the developmental stage and a short drought influenced overall biomass and the accumulation of carbon and N in plant tissues. In early developmental stages, the number of nodules and nodule biomass were correlated with total plant biomass and δ15N, and nodules and roots contributed 33%–35% of the seedling total N. Seedlings associated with R. tropici fixed more N and exhibited higher overall biomass compared with M. loti seedlings. Four and a half months after inoculation (140 days after inoculation, DAI, a short (15-day drought inhibited seedling growth and caused a decline in total plant N, with the smallest decline in R. tropici seedlings. After 15 days of drought, i.e., 155 DAI, the nodules had accumulated proline, but the total amino acid concentration did not change. Our results indicate that N-fixation is independent of seedlings growth. In addition, R. tropici is a better choice than M. loti as a symbiont for Leucaena seedlings for forest restoration and agroforestry applications under increasingly drier conditions.

  13. UN ESPACE AMBIVALENT : IMAGE DE CONSTANTINOPLE À TRAVERS AZIYADÉ DE PIERRE LOTI

    OpenAIRE

    Dorsaf BEN ESSID

    2010-01-01

    Dans Aziyadé, le même espace est à la fois investi d’une charge positive – lieu privilégié où se déploient les souvenirs, espace d’amour, de liberté et de rêve – et porteur d’une tonalité tragique : espace de mort, de souvenirs amers, de séparation… Après avoir étudié la dimension exotique du roman, nous essayerons de démontrer comment Constantinople se présente comme un espace ambivalent.

  14. The plant growth promoting substance, lumichrome, mimics starch, and ethylene-associated symbiotic responses in lotus and tomato roots.

    Science.gov (United States)

    Gouws, Liezel M; Botes, Eileen; Wiese, Anna J; Trenkamp, Sandra; Torres-Jerez, Ivone; Tang, Yuhong; Hills, Paul N; Usadel, Björn; Lloyd, James R; Fernie, Alisdair R; Kossmann, Jens; van der Merwe, Margaretha J

    2012-01-01

    Symbiosis involves responses that maintain the plant host and symbiotic partner's genetic program; yet these cues are far from elucidated. Here we describe the effects of lumichrome, a flavin identified from Rhizobium spp., applied to lotus (Lotus japonicus) and tomato (Solanum lycopersicum). Combined transcriptional and metabolite analyses suggest that both species shared common pathways that were altered in response to this application under replete, sterile conditions. These included genes involved in symbiosis, as well as transcriptional and metabolic responses related to enhanced starch accumulation and altered ethylene metabolism. Lumichrome priming also resulted in altered colonization with either Mesorhizobium loti (for lotus) or Glomus intraradices/G. mossea (for tomato). It enhanced nodule number but not nodule formation in lotus; while leading to enhanced hyphae initiation and delayed arbuscule maturation in tomato. PMID:22701462

  15. The plant growth promoting substance, lumichrome, mimics starch and ethylene-associated symbiotic responses in lotus and tomato roots

    Directory of Open Access Journals (Sweden)

    Liezel eGouws

    2012-06-01

    Full Text Available Symbiosis involves responses that maintain the plant host and symbiotic partner’s genetic program; yet these cues are far from elucidated. Here we describe the effects of lumichrome, a flavin identified from Rhizobium spp., applied to lotus (Lotus japonicus and tomato (Solanum lycopersicum. Combined transcriptional and metabolite analyses suggest that both species shared common pathways that were altered in response to this application under replete, sterile conditions. These included genes involved in symbiosis, as well as transcriptional and metabolic responses related to enhanced starch accumulation and altered ethylene metabolism. Lumichrome priming also resulted in altered colonization with either Mesorhizobium loti (for lotus or Glomus intraradices/Glomus mossea (for tomato. It enhanced nodule number but not nodule formation in lotus; while leading to enhanced hyphae initiation and delayed arbuscule maturation in tomato.

  16. Characterization of LysM-receptors and their ligands involved in development and regulation of legume-rhizobium symbiosis

    DEFF Research Database (Denmark)

    Broghammer, Angelique; Krusell, Lene; Blaise, Mickael;

    LysM domains are conserved protein domains found in proteins of multiple organisms. This includes bacterial peptidoglycan-binding proteins, chitinases from yeast and algae and membrane-bound receptor-like kinases in plants. Several LysM encoding genes have also been identified in humans, where...... specific decorations. The extracellular LysM domains of the NFR1 and NFR5 receptor kinases are believed to be responsible for perceiving the Mesorhizobium loti produced Nod factor in the epidermal root hair cells of Lotus japonicus. Several other genes encoding LysM containing proteins have been identified...... receptors followed by a thorough investigation of the structural conformation of the proteins and the interaction with Nod factor. Various approaches will be taken to determine the kinetics of the interaction, i.e. the rates of complex formation (ka) and dissociation (kd). The proteins are expressed either...

  17. Dicty_cDB: Contig-U12276-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available |pid:none) Mesorhizobium loti MAFF303099 D... 125 3e-27 AM270336_65( AM270336 |pid:none) Aspergillus niger contig...|pid:none) Chromohalobacter salexigens DSM... 97 1e-18 CP001562_360( CP001562 |pid:none) Bartonella grahamii...2044( CP000271 |pid:none) Burkholderia xenovorans LB400 c... 103 1e-20 CP000903_3373( CP000903 |pid:none) Bacillus wei...0526 |pid:none) Burkholderia mallei SAVP1 chrom... 103 1e-20 CP000724_3271( CP000724 |pid:none) Alkaliphilus metalliredige...920_486( CP000920 |pid:none) Streptococcus pneumoniae P1031, ... 91 9e-17 CP001104_401( CP001104 |pid:none) Eubacterium elige

  18. Dicty_cDB: Contig-U05710-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available ca RCB, co... 79 6e-14 CP000117_4667( CP000117 |pid:none) Anabaena variabilis ATCC 29413,... 77 1e-13 AM1811...'Deep eco... 75 9e-13 CP000117_1027( CP000117 |pid:none) Anabaena variabilis ATCC 29413,... 75 9e-13 CP00008...as fluorescens strain T22... 72 6e-12 CP000117_4672( CP000117 |pid:none) Anabaena variabilis ATCC 29413,... ...A000012_1848( BA000012 |pid:none) Mesorhizobium loti MAFF303099 D... 67 2e-10 CP000117_4750( CP000117 |pid:none) Anabaena variabili...( AY456034 |pid:none) Gibberella moniliformis putative h... 62 6e-09 CP000230_2028( CP000230 |pid:none) Rhodospiril

  19. Genetic suppressors of the Lotus japonicus har1-1 hypernodulation phenotype

    DEFF Research Database (Denmark)

    Murray, Jeremy; Karas, Bogumil; Ross, Loretta;

    2006-01-01

    Lotus japonicus har1 mutants respond to inoculation with Mesorhizobium loti by forming an excessive number of nodules due to genetic lesions in the HAR1 autoregulatory receptor kinase gene. In order to expand the repertoire of mutants available for the genetic dissection of the root nodule...... symbiosis (RNS), a screen for suppressors of the L. japonicus har1-1 hypernodulation phenotype was performed. Of 150,000 M2 plants analyzed, 61 stable L. japonicus double-mutant lines were isolated. In the context of the har1-1 mutation, 26 mutant lines were unable to form RNS, whereas the remaining 35...... because some of them may specify novel plant functions that regulate nodule development in L. japonicus. To facilitate mapping of the latter class of mutants, an introgression line, in which the har1-1 allele was introduced into a polymorphic background of L. japonicus ecotype MG20, was constructed...

  20. Ribotyping of rhizobia nodulating Acacia mangium and Paraserianthes falcataria from different geographical areas in Indonesia using PCR-RFLP-SSCP (PRS) and sequencing.

    Science.gov (United States)

    Clapp, J P; Mansur, I; Dodd, J C; Jeffries, P

    2001-04-01

    Acacia mangium and Paraserianthes falcataria are leguminous tree species widely grown for timber in Indonesia and other tropical countries, yet little is known about the identity of their rhizobial symbionts. Polymerase chain reaction-restriction fragment length polymorphism-single-strand conformational polymorphism (PRS) analysis of the 16S rRNA gene was used along with sequencing to assess the diversity of 57 rhizobia isolated from nodules of A. mangium and P. falctaria in Indonesia. In total, 26 rhizobia isolated from A. mangium were analysed by PRS and sequencing. The PRS patterns indicated that 12 (46%) clustered with Bradyrhizobium elkanii, 13 (50%) with B. lianoningense/japonicum and one (4%) with Mesorhizobium loti. Thirty-one isolates were analysed from P. falcataria: five (16%) clustered with B. elkanii and 26 (84%) with B. lianoningense/japonicum. These results were confirmed by phylogenetic analysis of sequences. Intraspecific diversity of the 16S rRNA genes from rhizobia nodulating A. mangium and P. falcataria revealed by PRS was low, only one genotype was found within the isolates that clustered with B. elkanii and two within the B. liaoningense/japonicum group. These Bradyrhizobium species are apparently ubiquitous throughout the Indonesian archipelago and it is clear why the two tree species are able to successfully establish outside their native range without the need for inoculation with indigenous rhizobia. PMID:11359513

  1. The effect of pseudo-microgravity on the symbiosis of plants and microorganisms

    Science.gov (United States)

    Tomita-Yokotani, Kaori; Maki, Asano; Aoki, Toshio; Tamura, Kenji; Wada, Hidenori; Hashimoto, Hirofumi; Yamashita, Masamichi

    The symbiosis of plants and microorganisms is important to conduct agriculture under space environment. However, we have less knowledge on whether this kind of symbiosis can be established under space condition. We examined the functional compounds responsible to symbiosis between rhizobiaum and Lotus japonicus as a model of symbiotic combination. The existence of the substances for their symbiosis, some flavonoids, have already been known from the study of gene expression, but the detail structures have not yet been elucidated. Pseudomicrogravity was generated by the 3D-clinorotation. Twenty flavonoids were found in the extracts of 16 days plants of Lotus japonicus grown under the normal gravity by HPLC. Content of two flavonoids among them was affected by the infection of Mesorhizobium loti to them. It has a possibility that the two flavonoids were key substances for their combination process. The productions of those flavonoids were confirmed also under the pseudo-microgravity. The amount of one flavonoid was increased by both infection of rhizobium and exposure to the normal and pseudo-micro gravity. Chemical species of these flavonoids were identified by LC- ESI/MS and spectroscopic analysis. To show the effects of pseudo-microgravity on the gene expression, enzymic activities related to the functional compounds are evaluated after the rhizobial infection.

  2. Telework v Evropě a v Lotyšsku: moderní přístupy a budoucí perspektivy

    OpenAIRE

    Baltina, Iveta; Vitola, Alise

    2014-01-01

    Purpose of the article: More usually companies are using telework – a wide-spread practice that allows employees and their tasks to be shared across settings away from central place of business or physical organizational location. Flexible work arrangements are increasingly seen as a key in helping women and men strike a better balance between work, private and family life. Moreover, telework may serve as a tool for regional development as it allows reaching the concentration of r...

  3. Production of indole acetic acid by Pseudomonas sp.: effect of coinoculation with Mesorhizobium sp. Cicer on nodulation and plant growth of chickpea (Cicer arietinum)

    OpenAIRE

    Malik, Deepak K.; Sindhu, Satyavir S.

    2011-01-01

    Pseudomonas isolates obtained from the rhizosphere of chickpea (Cicer arietinum L.) and green gram (Vigna radiata) were found to produce significant amount of indole acetic acid (IAA) when grown in a LB medium broth supplemented with L-tryptophan. Seed bacterization of chickpea cultivar C235 with different Pseudomonas isolates showed stunting effect on the development of root and shoot at 5 and 10 days of seedling growth except the strains MPS79 and MPS90 that showed stimulation of root growt...

  4. Development of a Microemulsion Formulation for Antimicrobial SecA Inhibitors

    Science.gov (United States)

    Wang, Nian

    2016-01-01

    In our previous study, we have identified five antimicrobial small molecules via structure based design, which inhibit SecA of Candidatus Liberibacter asiaticus (Las). SecA is a critical protein translocase ATPase subunit and is involved in pre-protein translocation across and integration into the cellular membrane in bacteria. In this study, eleven compounds were identified using similarity search method based on the five lead SecA inhibitors identified previously. The identified SecA inhibitors have poor aqueous solubility. Thus a microemulsion master mix (MMX) was developed to address the solubility issue and for application of the antimicrobials. MMX consists of N-methyl-2-pyrrolidone and dimethyl sulfoxide as solvent and co-solvent, as well as polyoxyethylated castor oil, polyalkylene glycol, and polyoxyethylene tridecyl ether phosphate as surfactants. MMX has significantly improved the solubility of SecA inhibitors and has no or little phytotoxic effects at concentrations less than 5.0% (v/v). The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of the SecA inhibitors and streptomycin against eight bacteria including Agrobacterium tumefaciens, Liberibacter crescens, Rhizobium etli, Bradyrhizobium japonicum, Mesorhizobium loti, and Sinorhizobium meliloti phylogenetically related to Las were determined using the broth microdilution method. MIC and MBC results showed that the 16 SecA inhibitors have antibacterial activities comparable to that of streptomycin. Overall, we have identified 11 potent SecA inhibitors using similarity search method. We have developed a microemulsion formulation for SecA inhibitors which improved the antimicrobial activities of SecA inhibitors. PMID:26963811

  5. Knockdown of LjALD1, AGD2-like defense response protein 1, influences plant growth and nodulation in Lotus japonicus

    Institute of Scientific and Technical Information of China (English)

    Wei Chen; Xueliu Li; Lu Tian; Pingzhi Wu; Meiru Li; Huawu Jiang; Yaping Chen; and Guojiang Wu

    2014-01-01

    The discovery of the enzyme L,L‐diaminopimelate aminotransferase (LL‐DAP‐AT, EC 2.6.1.83) uncovered a unique step in the L‐lysine biosynthesis pathway in plants. In Arabidopsis thaliana, LL‐DAP‐AT has been shown to play a key role in plant‐pathogen interactions by regulation of the salicylic acid (SA) signaling pathway. Here, a ful‐length cDNA of LL‐DAP‐AT named as LjALD1 from Lotus japonicus (Regel) Larsen was isolated. The deduced amino acid sequence shares 67%identity with the Arabidopsis aminotransferase AGD2‐LIKE DEFENSE RESPONSE PROTEIN1 (AtALD1) and is predicted to contain the same key elements:a conserved aminotransferase domain and a pyridoxal‐5’‐phosphate cofactor binding site. Quantitative real‐time PCR analysis showed that LjALD1 was expressed in al L. japonicus tissues tested, being strongest in nodules. Expression was induced in roots that had been infected with the symbiotic rhizobium Mesorhizobium loti or treated with SA agonist benzo‐(1, 2, 3)‐thiadiazole‐7‐carbothioic acid. LjALD1 Knockdown exhibited a lower SA content, an increased number of infection threads and nodules, and a slight reduction in nodule size. In addition, compared with wild‐type, root growth was increased and shoot growth was suppressed in LjALD1 RNAi plant lines. These results indicate that LjALD1 may play important roles in plant development and nodulation via SA signaling in L. japonicus.

  6. Development of a Microemulsion Formulation for Antimicrobial SecA Inhibitors.

    Directory of Open Access Journals (Sweden)

    Jiahuai Hu

    Full Text Available In our previous study, we have identified five antimicrobial small molecules via structure based design, which inhibit SecA of Candidatus Liberibacter asiaticus (Las. SecA is a critical protein translocase ATPase subunit and is involved in pre-protein translocation across and integration into the cellular membrane in bacteria. In this study, eleven compounds were identified using similarity search method based on the five lead SecA inhibitors identified previously. The identified SecA inhibitors have poor aqueous solubility. Thus a microemulsion master mix (MMX was developed to address the solubility issue and for application of the antimicrobials. MMX consists of N-methyl-2-pyrrolidone and dimethyl sulfoxide as solvent and co-solvent, as well as polyoxyethylated castor oil, polyalkylene glycol, and polyoxyethylene tridecyl ether phosphate as surfactants. MMX has significantly improved the solubility of SecA inhibitors and has no or little phytotoxic effects at concentrations less than 5.0% (v/v. The minimum inhibitory concentration (MIC and minimum bactericidal concentration (MBC of the SecA inhibitors and streptomycin against eight bacteria including Agrobacterium tumefaciens, Liberibacter crescens, Rhizobium etli, Bradyrhizobium japonicum, Mesorhizobium loti, and Sinorhizobium meliloti phylogenetically related to Las were determined using the broth microdilution method. MIC and MBC results showed that the 16 SecA inhibitors have antibacterial activities comparable to that of streptomycin. Overall, we have identified 11 potent SecA inhibitors using similarity search method. We have developed a microemulsion formulation for SecA inhibitors which improved the antimicrobial activities of SecA inhibitors.

  7. Development of a Microemulsion Formulation for Antimicrobial SecA Inhibitors.

    Science.gov (United States)

    Hu, Jiahuai; Akula, Nagaraju; Wang, Nian

    2016-01-01

    In our previous study, we have identified five antimicrobial small molecules via structure based design, which inhibit SecA of Candidatus Liberibacter asiaticus (Las). SecA is a critical protein translocase ATPase subunit and is involved in pre-protein translocation across and integration into the cellular membrane in bacteria. In this study, eleven compounds were identified using similarity search method based on the five lead SecA inhibitors identified previously. The identified SecA inhibitors have poor aqueous solubility. Thus a microemulsion master mix (MMX) was developed to address the solubility issue and for application of the antimicrobials. MMX consists of N-methyl-2-pyrrolidone and dimethyl sulfoxide as solvent and co-solvent, as well as polyoxyethylated castor oil, polyalkylene glycol, and polyoxyethylene tridecyl ether phosphate as surfactants. MMX has significantly improved the solubility of SecA inhibitors and has no or little phytotoxic effects at concentrations less than 5.0% (v/v). The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of the SecA inhibitors and streptomycin against eight bacteria including Agrobacterium tumefaciens, Liberibacter crescens, Rhizobium etli, Bradyrhizobium japonicum, Mesorhizobium loti, and Sinorhizobium meliloti phylogenetically related to Las were determined using the broth microdilution method. MIC and MBC results showed that the 16 SecA inhibitors have antibacterial activities comparable to that of streptomycin. Overall, we have identified 11 potent SecA inhibitors using similarity search method. We have developed a microemulsion formulation for SecA inhibitors which improved the antimicrobial activities of SecA inhibitors. PMID:26963811

  8. Phylogenomics and signature proteins for the alpha Proteobacteria and its main groups

    Directory of Open Access Journals (Sweden)

    Mok Amy

    2007-11-01

    Full Text Available Abstract Background Alpha proteobacteria are one of the largest and most extensively studied groups within bacteria. However, for these bacteria as a whole and for all of its major subgroups (viz. Rhizobiales, Rhodobacterales, Rhodospirillales, Rickettsiales, Sphingomonadales and Caulobacterales, very few or no distinctive molecular or biochemical characteristics are known. Results We have carried out comprehensive phylogenomic analyses by means of Blastp and PSI-Blast searches on the open reading frames in the genomes of several α-proteobacteria (viz. Bradyrhizobium japonicum, Brucella suis, Caulobacter crescentus, Gluconobacter oxydans, Mesorhizobium loti, Nitrobacter winogradskyi, Novosphingobium aromaticivorans, Rhodobacter sphaeroides 2.4.1, Silicibacter sp. TM1040, Rhodospirillum rubrum and Wolbachia (Drosophila endosymbiont. These studies have identified several proteins that are distinctive characteristics of all α-proteobacteria, as well as numerous proteins that are unique repertoires of all of its main orders (viz. Rhizobiales, Rhodobacterales, Rhodospirillales, Rickettsiales, Sphingomonadales and Caulobacterales and many families (viz. Rickettsiaceae, Anaplasmataceae, Rhodospirillaceae, Acetobacteraceae, Bradyrhiozobiaceae, Brucellaceae and Bartonellaceae. Many other proteins that are present at different phylogenetic depths in α-proteobacteria provide important information regarding their evolution. The evolutionary relationships among α-proteobacteria as deduced from these studies are in excellent agreement with their branching pattern in the phylogenetic trees and character compatibility cliques based on concatenated sequences for many conserved proteins. These studies provide evidence that the major groups within α-proteobacteria have diverged in the following order: (Rickettsiales(Rhodospirillales (Sphingomonadales (Rhodobacterales (Caulobacterales-Parvularculales (Rhizobiales. We also describe two conserved inserts in DNA

  9. Early-time observations of gamma-ray burst error boxes with the Livermore optical transient imaging system

    Energy Technology Data Exchange (ETDEWEB)

    Williams, G G

    2000-08-01

    Despite the enormous wealth of gamma-ray burst (GRB) data collected over the past several years the physical mechanism which causes these extremely powerful phenomena is still unknown. Simultaneous and early time optical observations of GRBs will likely make an great contribution t o our understanding. LOTIS is a robotic wide field-of-view telescope dedicated to the search for prompt and early-time optical afterglows from gamma-ray bursts. LOTIS began routine operations in October 1996 and since that time has responded to over 145 gamma-ray burst triggers. Although LOTIS has not yet detected prompt optical emission from a GRB its upper limits have provided constraints on the theoretical emission mechanisms. Super-LOTIS, also a robotic wide field-of-view telescope, can detect emission 100 times fainter than LOTIS is capable of detecting. Routine observations from Steward Observatory's Kitt Peak Station will begin in the immediate future. During engineering test runs under bright skies from the grounds of Lawrence Livermore National Laboratory Super-LOTIS provided its first upper limits on the early-time optical afterglow of GRBs. This dissertation provides a summary of the results from LOTIS and Super-LOTIS through the time of writing. Plans for future studies with both systems are also presented.

  10. Early-time Observations of Gamma-ray Burst Error Boxes with the Livermore Optical Transient Imaging System

    Science.gov (United States)

    Williams, George Grant

    2000-08-01

    Approximately three times per day a bright flash of high energy radiation from the depths of the universe encounters the Earth. These gamma-ray bursts (GRBs) were discovered circa 1970 yet their origin remains a mystery. Traditional astronomical observations of GRBs are hindered by their transient nature. They have durations of only a few seconds and occur at random times from unpredictable directions. In recent years, precise GRB localizations and rapid coordinate dissemination have permitted sensitive follow-up observations. These observations resulted in the identification of long wavelength counterparts within distant galaxies. Despite the wealth of data now available the physical mechanism which produces these extremely energetic phenomena is still unknown. In the near future, simultaneous and early-time optical observations of GRBs will aid in constraining the theoretical models. The Livermore Optical Transient Imaging System (LOTIS) is an automated robotic wide field-of-view telescope dedicated to the search for prompt and early-time optical emission from GRBs. Since routine operations began in October 1996 LOTIS has responded to over 145 GRB triggers. LOTIS has not yet detected optical emission from a GRB but upper limits provided by the telescope constrain the theoretical emission mechanisms. Super-LOTIS, also a robotic wide field-of-view telescope, is 100 times more sensitive than LOTIS. Routine observations from Steward Observatory's Kitt Peak Station will begin in the immediate future. During engineering test runs Super-LOTIS obtained its first upper limit on the early-time optical afterglow of GRBs. An overview of the history and current state of GRBs is presented. Theoretical models are reviewed briefly. The LOTIS and Super-LOTIS hardware and operating procedures are discussed. A summary of the results from both LOTIS and Super-LOTIS and an interpretation of those results is presented. Plans for future studies with both systems are briefly stated.

  11. VizieR Online Data Catalog: ROTSE delta Scuti stars (Blake+, 2003)

    Science.gov (United States)

    Blake, C.; Fox, D. W.; Park, H. S.; Williams, G. G.

    2003-03-01

    Observations of the target stars were carried out during May and June, 2002, with the Super Livermore Optical Transient Imaging System (Super-LOTIS) robotic telescope located at the Steward Observatory site on Kitt Peak, Arizona. (1 data file).

  12. Národnostní menšiny v Československu a Lotyšsku. Na příkladu vzdělávání menšin v mateřském jazyce

    Czech Academy of Sciences Publication Activity Database

    Nosková, Helena

    Liberec : Liberecké romské sdružení, 2009 - (Švingalová, D.; Kotlár, M.), s. 34-47 ISBN 978-80-903953-3-6. [Multikulturalita a menšiny v evropském kontextu. Liberec (CZ), 27.11.2008-28.11.2008] R&D Projects: GA MŠk 2D06001 Institutional research plan: CEZ:AV0Z80630520 Keywords : Latvia * Russian minority groups in Latvia * Slovak minority groups in Czech republic * language Subject RIV: AB - History

  13. 'Mälestus päikesest - kuhu küll jäi see...'; Tsarskoje Selos I, III; 'Talveingel talvepäeval...'; 'Sadu kordi olen neednud...'; Loti naine; Miikal; Itk; 'Oli taevas nii põhjatu, kõrge ja sinise laega...' : [luuletused] / Anna Ahmatova ; vene k

    Index Scriptorium Estoniae

    Ahmatova, Anna, pseud., 1889-1966

    1997-01-01

    Orig.: "Pamjat o solntse v serdtse slabejet..." ; V Tsarskom Sele I-III ; "Bozhi Angel, zimnim utrom..." ; "Stolko raz ja proklinala..." ; Lotova zhena ; Melhola ; Pritshitanije ; "Nebõvalaja ossen postroila kupol võssoki..."

  14. Genetic diversity of rhizobial populations recovered from three Lotus species cultivated in the infra-arid Tunisian soils

    Institute of Scientific and Technical Information of China (English)

    Mokhtar Rejili; Maria José Lorite; Mosbah Mahdhi; Juan Sanjuan Pinilla; Ali Ferchichi; Mohamed Mars

    2009-01-01

    gments from each strain based on the UPGMA algorithm from the combined patterns showed that Lotus isolates are very diverse and that they were affiliated to Sinorhizobium,Rhizobium,and Mesorhizobium genera.

  15. Evolution and taxonomy of native mesorhizobia nodulating medicinal Glycyrrhiza species in China.

    Science.gov (United States)

    Mousavi, Seyed Abdollah; Li, Li; Wei, Gehong; Räsänen, Leena; Lindström, Kristina

    2016-06-01

    Previously, 159 bacterial strains were isolated from the root nodules of wild perennial Glycyrrhiza legume species grown on 40 sites in central and north-western China, in which 57 strains were classified as "true symbionts" belonging to the genus Mesorhizobium based on amplified fragment length polymorphism (AFLP) genomic fingerprinting and partial sequences of the 16S rRNA gene [20]. In the present work, the phylogeny of Glycyrrhiza nodulating mesorhizobia was further examined by multilocus sequence analysis (MLSA). The concatenated gene tree of three housekeeping genes (16S rRNA, recA, and rpoB) of 59 strains including the 29 mesorhizobial test strains and 30 type mesorhizobial species, was constructed applying the maximum likelihood method and Bayesian inference. In the concatenated gene tree, the 29 test strains were distributed in seven separate clades. Seventeen test strains clustered with Mesorhizobium tianshanense, Mesorhizobium temperatum, Mesorhizobium muleiense, and Mesorhizobium alhagi with high bootstrap support (BS>85%). Eight test strains did not cluster with any of the described Mesorhizobium species. Based on the results, we proposed these eight test strains might belong to a putative new species of the genus Mesorhizobium. The sequences of three accessory genes (nodA, nodC, and nifH) of the test strains were also analyzed and were compared with those of representatives of the 30 described mesorhizobial species. The results showed that mesorhizobia involved in symbiosis with Glycyrrhiza plants probably have acquired some genetic material from other rhizobia in co-evolution with Glycyrrhiza and other legume species. PMID:27105685

  16. Prompt GRB optical follow-up experiments

    Energy Technology Data Exchange (ETDEWEB)

    Park, H-S; Williams, G; Ables, E; Band, D; Barthelmy, S; Bionta, R; Cline, T; Gehrels, N; Hartmann, D; Hurley, K; Kippen, M; Nemiroff, R; Pereira, W; Porrata, R

    2000-11-13

    Gamma Ray Bursts (GRBs) are brief, randomly located, releases of gamma-ray energy from unknown celestial sources that occur almost daily. The study of GRBs has undergone a revolution in the past three years due to an international effort of follow-up observations of coordinates provided by Beppo/SAX and IPN GRB. These follow-up observations have shown that GRBs are at cosmological distances and interact with surrounding material as described by the fireball model. However, prompt optical counterparts have only been seen in one case and are therefore very rare or much dimmer than the sensitivity of the current instruments. Unlike later time afterglows, prompt optical measurements would provide information on the GRB progenitor. LOTIS is the very first automated and dedicated telescope system that actively utilizes the GRB Coordinates Network (GCN) and it attempts to measure simultaneous optical light curve associated with GRBs. After 3 years of running, LOTIS has responded to 75 GRB triggers. The lack of any optical signal in any of the LOTIS images places numerical limits on the surrounding matter density, and other physical parameters in the environment of the GRB progenitor. This paper presents LOTIS results and describes other prompt GRB follow-up experiments including the Super-LOTIS at Kitt Peak in Arizona.

  17. Impact of Professional Development on Level of Technology Integration in the Elementary Classroom

    Science.gov (United States)

    Miktuk, Darlynda

    2012-01-01

    The purpose of the quantitative study was to evaluate the impact of professional development on the level of technology integration within the elementary classroom using an online survey known as the LoTi (levels of teaching innovation) survey. Information about the history of computers, technology integration, andragogy, and effective…

  18. The Impact a Technology Leader and Their Leadership Style Makes in K-12 Classroom Teacher's Implementation of Technology

    Science.gov (United States)

    Smith, Molly S.

    2011-01-01

    The purpose of the study was to examine how public school technology leaders' leadership styles in Pennsylvania schools impact K-12 classroom teachers' integration of technology. The study collected data using two online surveys, the MLQ and LoTi, which measured leadership styles and levels of technology integration. Despite the large sample size…

  19. On Monkeys and Japanese: Mimicry and Anastrophe in Orientalist Representation

    Directory of Open Access Journals (Sweden)

    Blai Guarné

    2008-05-01

    Full Text Available A number of lines of work are presented from a current project into the implications of Orientalism in the stereotypical representation of Japan through the analysis of the discourses of the paradox and inverse civilisation, and the consideration of the animalisation strategies of the Other in the travel literature of Pierre Loti and the fiction of Pierre Boulle.

  20. Developing Higher-Order Thinking Skills through WebQuests

    Science.gov (United States)

    Polly, Drew; Ausband, Leigh

    2009-01-01

    In this study, 32 teachers participated in a year-long professional development project related to technology integration in which they designed and implemented a WebQuest. This paper describes the extent to which higher-order thinking skills (HOTS) and levels of technology implementation (LoTI) occur in the WebQuests that participants designed.…

  1. 77 FR 38772 - Prospective Grant of Exclusive Patent License

    Science.gov (United States)

    2012-06-29

    ... propagation. Laser light is directed onto at least a portion of the neutral atoms in the atom beam, thereby... distributions controlled by the application of laser light is produced. The produced atom beam is spatially... Cold Atom Beam,'' NIST Docket No. 11-018 to LoTIS Technologies LLC, having a place of business at...

  2. AcEST: DK943916 [AcEST

    Lifescience Database Archive (English)

    Full Text Available RHILO Nucleoside-triphosphatase OS=Rhizobium loti... 37 0.070 sp|Q68DV7|RNF43_HUMAN RING finger protein 43 O...AMAMQRTEVALQEVG 118 >sp|Q68DV7|RNF43_HUMAN RING finger protein 43 OS=Homo sapiens GN=RNF4

  3. Nitrogen fixation by U.S. and Middle Eastern chickpeas with commercial and wild Middle Eastern inocula

    Science.gov (United States)

    Chickpeas (Cicer arietinum L.) are native to the Middle East (ME), and must be inoculated with symbiotic bacteria in order to fix nitrogen (N) in North American soils. Commercial inocula for chickpea contain several strains of the known N-fixing symbiont Mesorhizobium ciceri. It is not known whethe...

  4. Expression and reconstitution of the bioluminescent Ca(2+) reporter aequorin in human embryonic stem cells, and exploration of the presence of functional IP3 and ryanodine receptors during the early stages of their differentiation into cardiomyocytes.

    Science.gov (United States)

    Chan, Harvey Y S; Cheung, Man Chun; Gao, Yi; Miller, Andrew L; Webb, Sarah E

    2016-08-01

    In order to develop a novel method of visualizing possible Ca(2+) signaling during the early differentiation of hESCs into cardiomyocytes and avoid some of the inherent problems associated with using fluorescent reporters, we expressed the bioluminescent Ca(2+) reporter, apo-aequorin, in HES2 cells and then reconstituted active holo-aequorin by incubation with f-coelenterazine. The temporal nature of the Ca(2+) signals generated by the holo-f-aequorin-expressing HES2 cells during the earliest stages of differentiation into cardiomyocytes was then investigated. Our data show that no endogenous Ca(2+) transients (generated by release from intracellular stores) were detected in 1-12-day-old cardiospheres but transients were generated in cardiospheres following stimulation with KCl or CaCl2, indicating that holo-f-aequorin was functional in these cells. Furthermore, following the addition of exogenous ATP, an inositol trisphosphate receptor (IP3R) agonist, small Ca(2+) transients were generated from day 1 onward. That ATP was inducing Ca(2+) release from functional IP3Rs was demonstrated by treatment with 2-APB, a known IP3R antagonist. In contrast, following treatment with caffeine, a ryanodine receptor (RyR) agonist, a minimal Ca(2+) response was observed at day 8 of differentiation only. Thus, our data indicate that unlike RyRs, IP3Rs are present and continually functional at these early stages of cardiomyocyte differentiation. PMID:27430888

  5. Three new optical nova candidates in M 31

    Science.gov (United States)

    Pietsch, W.; Henze, M.; Burwitz, V.; Kaur, A.; Hartmann, D. H.; Williams, G.; Milne, P.

    2011-06-01

    We report the discovery of three nova candidates in M 31 on 7x60s stacked R filter CCD images obtained with the robotic 60cm telescope with an E2V CCD (2kx2k, 13.5 micron sq. pixels) of the Livermore Optical Transient Imaging System (Super-LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA) on 2011 June 7.418 UT. The objects are visible on all individual images.

  6. Supersoft X-ray transient leads to the discovery of the second optical nova in a M 31 globular cluster

    Science.gov (United States)

    Henze, M.; Pietsch, W.; Burwitz, V.; Lloyd, J.; Hornoch, K.; Nishiyama, K.; Kabashima, F.; Kaur, A.; Hartmann, D. H.; Milne, P.; Williams, G.

    2010-11-01

    Alerted by the detection of a transient supersoft X-ray source (SSS) in the M 31 globular cluster (GC) Bol 126 (see ATel #3013), we investigated the long-term optical light curve of Bol 126 based on our monitoring of M 31 with the robotic 60cm telescope with an E2V CCD (2kx2k, 13.5 micron sq. pixels) of the Livermore Optical Transient Imaging System (Super- LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA).

  7. Richard M. Berrong, Putting Monet and Rembrandt into words. Pierre Loti’s Recreation and Theorization of Claude Monet’s Impressionism and Rembrandt’s Landscape in Literature

    OpenAIRE

    De Pieri, Damiano

    2016-01-01

    Negli ultimi tempi la questione del cosiddetto «impressionnisme littéraire» ha suscitato un rinnovato interesse dimostrato dalla pubblicazione di svariati contributi scientifici a cui viene ad aggiungersi questo recente volume dedicato, nello specifico, alla relazione tra la scrittura di Pierre Loti e la pittura. Ponendosi sulla scia di una critica anglosassone che pone l’accento sulle implicazioni filosofiche per la definizione di uno stile impressionista (l’espressione come risultato di un ...

  8. Diversity and phylogeny of rhizobia associated with Desmodium spp. in Panxi, Sichuan, China.

    Science.gov (United States)

    Xu, Kai Wei; Zou, Lan; Penttinen, Petri; Zeng, Xiangzhong; Liu, Ming; Zhao, Ke; Chen, Cuiping; Chen, Yuan Xue; Zhang, Xiaoping

    2016-02-01

    Thirty-four rhizobial isolates were obtained from root nodules of four wild Desmodium species growing in Panxi, Sichuan, China. According to the combined ARDRA and IGS-RFLP (CACAI) cluster analysis, Rhizobium, Pararhizobium and Mesorhizobium isolates outnumbered Bradyrhizobium isolates. In general, the isolates representing the same species from the same site clustered together. Furthermore, the four Desmodium species were all nodulated by more than one rhizobial species. AFLP and phenotypic analyses showed that the 34 isolates represented at least 32 distinct strains. None of the strains were found from more than one site or host, indicating a high degree of rhizobial diversity in Panxi. In the multilocus sequence analysis, the isolates were assigned to Pararhizobium giardinii, Bradyrhizobium japonicum, Mesorhizobium septentrionale, and to undescribed species of the genera Rhizobium, Bradyrhizobium and Agrobacterium. PMID:26654528

  9. Rhizostabilzation of a mine tailing higly contaminated: Previous study of Cd localization and speciation in Anthyllis vulneraria

    Directory of Open Access Journals (Sweden)

    Huguet S.

    2013-04-01

    Full Text Available The plant Anthyllis vulneraria has been identified in mine tailings and the aim of this study is to determine the mechanisms developed by the plant and its symbiotic association Mesorhizobium metallidurans to tolerate Cd. We particulary intend to determine the distribution and speciation of Cd in plant using a combination of μXRF (X-ray fluorescence and Cd XANES and μXANES (X-ray Absorption Near Edge Structure.

  10. Effect of salt stress and phosphorus deficiency in mutants of rhizobium obtained by gamma irradiation

    International Nuclear Information System (INIS)

    Two strains of Rhizobium: Rhizobium Tropici and Mesorhizobium Ciceri nodulating respectively common bean and chickpea were treated by gamma irradiation (60Co) source. Radiosensibility analysis showed that 800 Gy was the biggest dose supported by these two strains. We isolated gamma irradiated resistant strain in order to select mutant of them which can supported salt stress and phosphorus deficiency. Salinity analysis showed that Mesorhizobium Ciceri 835 strain, can tolerate up to 18g/l (273 mM NaCl) of salt, whereas, their irradiation mutants tolerate salinity up to 33g/l (564mM. NaCl) Rhizobium Tropici CIAT899 can survive at 20g/l (342 mM) either for control strain or mutants. Analysis of phosphorus deficiency showed that either Rhizobium Tropici CIAT899, or Mesorhizobium Ciceri 835 can survive in medium without phosphore. Our results permit us to screen mutants tolerant to these stresses wide spread in Mediterranean soil. In this study, we choose two mutants strains irradiated by 700Gy and two mutants irradiated by 800Gy in each species, these mutants were characterized by their best growth compared with their reference strains. Our results showed that Gamma irradiation modified antibiotic resistance, such as kanamicyne, tetracycline, vancomicyne, streptomicyne, penicilline, either at 700Gy or at 800Gy, we obtained significant modification of response and persistence of penicilline resistance. Biochemical analysis showed that these strains had a variable superoxide dismutase (SOD, E.C. 1.15.1.1) and catalase (CAT, E.C. 1.11.1.6) activities essentially in Mesorhizobium Ciceri 835 mutant strains, these two enzymatic antioxidants was suggested to play an important role in environmental stress tolerance. (author)

  11. Transient effect of weak electromagnetic fields on calcium ion concentration in Arabidopsis thaliana

    Directory of Open Access Journals (Sweden)

    Rassadina Valentina

    2009-04-01

    Full Text Available Abstract Background Weak magnetic and electromagnetic fields can influence physiological processes in animals, plants and microorganisms, but the underlying way of perception is poorly understood. The ion cyclotron resonance is one of the discussed mechanisms, predicting biological effects for definite frequencies and intensities of electromagnetic fields possibly by affecting the physiological availability of small ions. Above all an influence on Calcium, which is crucial for many life processes, is in the focus of interest. We show that in Arabidopsis thaliana, changes in Ca2+-concentrations can be induced by combinations of magnetic and electromagnetic fields that match Ca2+-ion cyclotron resonance conditions. Results An aequorin expressing Arabidopsis thaliana mutant (Col0-1 Aeq Cy+ was subjected to a magnetic field around 65 microtesla (0.65 Gauss and an electromagnetic field with the corresponding Ca2+ cyclotron frequency of 50 Hz. The resulting changes in free Ca2+ were monitored by aequorin bioluminescence, using a high sensitive photomultiplier unit. The experiments were referenced by the additional use of wild type plants. Transient increases of cytosolic Ca2+ were observed both after switching the electromagnetic field on and off, with the latter effect decreasing with increasing duration of the electromagnetic impact. Compared with this the uninfluenced long-term loss of bioluminescence activity without any exogenic impact was negligible. The magnetic field effect rapidly decreased if ion cyclotron resonance conditions were mismatched by varying the magnetic fieldstrength, also a dependence on the amplitude of the electromagnetic component was seen. Conclusion Considering the various functions of Ca2+ as a second messenger in plants, this mechanism may be relevant for perception of these combined fields. The applicability of recently hypothesized mechanisms for the ion cyclotron resonance effect in biological systems is discussed

  12. AcEST: DK959266 [AcEST

    Lifescience Database Archive (English)

    Full Text Available plantlets Developmental stage gametophytes with sporophytes C...us-veneris mRNA. clone: TST39A01NGRL0004_D14. 5' end sequence. Accession DK959266 Tissue type prothallia with...GGVTGKMISPQSIAVACAA 522 >sp|Q6M9M7|Y1998_PARUW Uncharacterized RNA methyltransferase pc1998 OS=Protochlamydia amoeboph...>tr|Q6WDA9|Q6WDA9_9RODE Breast cancer protein 1 (Fragment) OS=Ototylomys phylloti...amin synthase OS=Rhizobium loti GN=cob... 31 6.9 >sp|P71067|YVFH_BACSU Putative L-lactate permease yvfH OS=Bacill

  13. New optical nova candidate in M 31, a possible recurrent nova?

    Science.gov (United States)

    Pietsch, W.; Henze, M.; Burwitz, V.; Updike, A.; Milne, P.; Williams, G.; Hartmann, D. H.

    2009-02-01

    We report the discovery of a possible nova in M 31 on two 8x60s stacked R filter CCD images obtained with the robotic 60cm telescope with an E2V CCD (2kx2k, 13.5μm sq. pixels) of the Livermore Optical Transient Imaging System (Super-LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA). The object was first detected on 2009 February 20.13 and 21.13 UT with respective magnitudes of 18.5 and 18.6.

  14. New optical nova candidate in the outer disk of M 31

    Science.gov (United States)

    Pietsch, W.; Henze, M.; Burwitz, V.; Kaur, A.; Hartmann, D. H.; Milne, P.; Williams, G.

    2011-02-01

    We report the discovery of a possible nova in the outer disk of M 31 on two 15x60s and 7x60s stacked R filter CCD images obtained with the robotic 60cm telescope with an E2V CCD (2kx2k, 13.5 micron sq. pixels) of the Livermore Optical Transient Imaging System (Super-LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA) on 2011 February 15.127 and 18.121 UT with magnitude of 18.7 and 18.0, respectively.

  15. Elevated Optical Luminosity for Gamma-ray Blazar BL Lacertae

    Science.gov (United States)

    Furniss, A.; Fumagalli, M.; Hogan, M.; Kaplan, K.; Prochaska, P. X.; Williams, D. A.

    2012-06-01

    We report on the increased optical luminosity of BL Lacertae (RA=22h02m43.29s, dec=42d16m39.98s), a low-frequency-peaked gamma-ray emitting blazar at a redshift of 0.068 (3EG J2202+4225, 2FGL J2202.8+4216). We have collected regular R-band exposures for BL Lacertae as part of a larger optical monitoring program of gamma-ray-bright blazars using the Super-LOTIS (Livermore Optical Transient Imaging System) robotic telescope at the Steward Observatory on Kitt Peak, near Tucson Arizona.

  16. Optical Nova Candidates in M 31

    Science.gov (United States)

    Henze, M.; Burwitz, V.; Pietsch, W.; Updike, A.; Milne, P.; Williams, G.; Hartmann, D. H.

    2008-06-01

    We report the discovery of an optical nova candidate in M 31 on two 11x60s stacked R filter CCD images obtained with the robotic 60cm telescope with an E2V CCD (2kx2k) of the Livermore Optical Transient Imaging System (Super-LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA). The object was first detected on 2008 June 06.47 and 07.47 UT with respective magnitudes of 18.0 and 17.9.

  17. Dicty_cDB: Contig-U15082-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available 3 ( AJ831725 ) Zygaena ignifera mitochondrial tRNA-Leu (CUN) gen... 42 4.1 2 ( AJ831719 ) Zygaena arme...na armena mitochondrial tRNA-Leu (CUN... 42 4.1 2 ( AJ831729 ) Zygaena loti macedonica...tckyinkinqifkhlkk k Translated Amino Acid sequence (All Frames) Frame A: kkp*hfkkkkppyfl*iiinnlnsiik*hllkvfv...AACACTTAAAAAAAAAA Gap no gap Contig length 545 Chromosome number (1..6, M) 4 Chromosome length 5430582 Start...8,075,542 total letters Score E Sequences producing significant alignments: (bits) Value Contig-U15082-1 (Co

  18. Climatic irregular staircases: generalized acceleration of global warming

    OpenAIRE

    Bernard De Saedeleer

    2016-01-01

    Global warming rates mentioned in the literature are often restricted to a couple of arbitrary periods of time, or of isolated values of the starting year, lacking a global view. In this study, we perform on the contrary an exhaustive parametric analysis of the NASA GISS LOTI data, and also of the HadCRUT4 data. The starting year systematically varies between 1880 and 2002, and the averaging period from 5 to 30 yr — not only decades; the ending year also varies . In this way, we uncover a who...

  19. Dicty_cDB: Contig-U13423-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available e) DNA centromeric region sequence f... 171 6e-41 AY351262_1( AY351262 |pid:none) Chlamydomonas reinhardtii putati...e) Nitrobacter hamburgensis X14, c... 50 1e-04 CP000089_1694( CP000089 |pid:none) Dechloromonas aromati...e) Mycobacterium smegmatis str. MC... 37 1.9 CP000440_2519( CP000440 |pid:non...0826_2887( CP000826 |pid:none) Serratia proteamaculans 568, co... 36 2.5 CP001614_942( CP001614 |pid:non...e) Mesorhizobium sp. BNC1, complet... 119 2e-25 CP000248_3067( CP000248 |pid:none) Novosphingobium aromati

  20. Paradisi impossibili. Spazi vegetali nel romanzo fin-de-siècle

    Directory of Open Access Journals (Sweden)

    Paola Carmagnani

    2012-05-01

    Full Text Available This essay discusses the modern novel’s attempt to create edenic spaces of natural innocence. It focuses on two French novels, La Faute de l’Abbé Mouret by Emile Zola (1875 and Le Mariage de Loti by Pierre Loti (1880, which both unsuccessfully try to build an edenic chronotope : a vegetal Paradise where time stops being a source of distruction, and where life seems to recover its lost signification. The analysis of these narratives will show that the construction of this kind of space has become, in the modern novel, a difficult and contradictory operation. Moreover, this renewed natural Eden appears incapable of containing the plot : it closes up on itself , expelling the heroes who inhabited it and rejecting them into the conflictual and incoherent space of Culture to which they belong. This unsuccessful construction leads the narratives to a contradictory representation of Nature, which becomes an uncanny space where the dark figures of the unconscious reveal the unsatisfactory illusion of the edenic chronotope. In this respect, these two narratives significatively rejoin the literary model which will dominate the representation of Natural spaces in the European novel by the end of the nineteenth century.

  1. Characterization of root-nodulating bacteria associated to Prosopis farcta growing in the arid regions of Tunisia.

    Science.gov (United States)

    Fterich, A; Mahdhi, M; Caviedes, M A; Pajuelo, E; Rivas, R; Rodriguez-Llorente, I D; Mars, M

    2011-06-01

    Diversity of 50 bacterial isolates recovered from root nodules of Prosopis farcta grown in different arid soils in Tunisia, was investigated. Characterization of isolates was assessed using a polyphasic approach including phenotypic characteristics, 16S rRNA gene PCR--RFLP and sequencing, nodA gene sequencing and MLSA. It was found that most of isolates are tolerant to high temperature (40°C) and salinity (3%). Genetic characterization emphasizes that isolates were assigned to the genus Ensifer (80%), Mesorhizobium (4%) and non-nodulating endophytic bacteria (16%). Forty isolates belonging to the genus Ensifer were affiliated to Ensifer meliloti, Ensifer xinjiangense/Ensifer fredii and Ensifer numidicus species. Two isolates belonged to the genus Mesorhizobium. Eight isolates failing to renodulate their host plant were endophytic bacteria and belonged to Bacillus, Paenibacillus and Acinetobacter genera. Symbiotic properties of nodulating isolates showed a diversity in their capacity to infect their host plant and fix atmospheric nitrogen. Isolate PG29 identified as Ensifer meliloti was the most effective one. Ability of Prosopis farcta to establish symbiosis with rhizobial species confers an important advantage for this species to be used in reforestation programs. This study offered the first systematic information about the diversity of microsymbionts nodulating Prosopis farcta in the arid regions of Tunisia. PMID:21359955

  2. A new record of Holarctic genus Odontothrips (Thysanoptera, Thripidae) from India with a new species.

    Science.gov (United States)

    Tyagi, Kaomud; Kumar, Vikas

    2016-01-01

    The Holarctic genus Odontothrips of Megalurothrips genus-group was established by Amyot & Serville in 1843 with type species Thrips phaleratus Haliday (Mound & Palmer 1981, Mirab-balou & Chen 2011). This genus is known by 32 species from the Palearctic and Nearctic regions (ThripsWiki 2015), and these species are flower-living and mainly associated with flowers of family Fabaceae (Xie et al. 2010). The pest status of Odontothrips species is uncertain, but some species are reported to cause superficial damage to the flowers on which they feed. O. confusus Priesner is reported as a pest on lucerne in France and Czech Republic (Pitkin 1972), and also on legumes in Romania (Pustai et al. 2015). O. loti (Haliday) is reported as a major pest on Alfalfa in north China, where it feeds on tender leaves and causes leaf curling, whitening and withering (Kou et al. 2011). PMID:27395891

  3. Confirmation of a recent optical nova candidate in M 31 and H- alpha identification of seven M 31 novae

    Science.gov (United States)

    Henze, M.; Pietsch, W.; Burwitz, V.; Updike, A.; Hartmann, D. H.; Milne, P.; Williams, G.

    2008-07-01

    We report the confirmation of a nova candidate in M 31 recently reported to us by K. Hornoch. We detected this object with an R magnitude of 18.7 in a 12x60s stacked R filter CCD image obtained on 2008 June 30.43 with the robotic 60cm telescope with an E2V CCD (2kx2k) of the Livermore Optical Transient Imaging System (Super-LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA). The position of the nova candidate is RA = 00h43m08.30s, Dec = +41d18'38.0" (J2000, accuracy of 0.3"), which is 4'30" east and 2'29" north of the core of M 31.

  4. Possible optical Nova in M 31

    Science.gov (United States)

    Pietsch, W.; Burwitz, V.; Updike, A.; Milne, P.; Williams, G.; Hartmann, D.

    2007-11-01

    We report the discovery of an optical nova candidate in M 31 on two 8*60sec stacked R filter CCD images obtained with the robotic 60cm telescope with an E2V CCD (2kx2k) Livermore Optical Transient Imaging System (Super- LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA) on 2007 Nov 2.28 and 2.37 with respective magnitudes of 16.9 and 17.0. The position for the nova candidate is RA = 00h42m37.29s, Dec = +41d17'10.3" (J2000, accuracy of 0.2"), which is 1' 19" west and 1' 2" north of the core of M 31.

  5. Optical Nova Candidate in M 31

    Science.gov (United States)

    Henze, M.; Burwitz, V.; Pietsch, W.; Updike, A.; Milne, P.; Williams, G.; Hartmann, D. H.

    2008-06-01

    We report the discovery of an optical nova candidate in M 31 on two 11x60s stacked R filter CCD images obtained with the robotic 60cm telescope with an E2V CCD (2kx2k) of the Livermore Optical Transient Imaging System (Super-LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA). The object was first detected on 2008 June 14.46 and 16.46 UT with respective magnitudes of 18.0 and 17.7. The position for the nova candidate is RA = 00h42m37.72s, Dec = +41d12'30.0"(J2000, accuracy of 0.3"), which is 1'14" west and 3'39" south of the core of M 31. All magnitudes given are obtained from a photometric solution using R magnitudes of the Local Group Survey M 31 catalogue (Massey et al.

  6. Possible Nova in M31

    Science.gov (United States)

    Burwitz, V.; Pietsch, W.; Updike, A.; Hartmann, D.; Milne, P.; Williams, G.

    2007-10-01

    We report the discovery of an optical nova candidate in M 31 on two 4*60sec stacked R filter CCD images obtained with the robotic 60cm telescope with an E2V CCD (2kx2k) Livermore Optical Transient Imaging System (Super- LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA) on 2007 Oct 13.255, 13.259 with respective magnitudes of 18.0, 17.8. The position for the nova candidate is RA = 00h43m29.48s, Dec(2000) = +41d17'13.5" (J2000, accuracy of 0.2"), which is 8' 29" east and 1' 5" north of the core of M 31.

  7. Possible new optical Nova in M 31

    Science.gov (United States)

    Henze, M.; Burwitz, V.; Pietsch, W.; Updike, A.; Hartmann, D.; Milne, P.; Williams, G.

    2007-12-01

    We report the discovery of an optical nova candidate in M 31 on two 8*60sec stacked R filter CCD images obtained with the robotic 60cm telescope with an E2V CCD (2kx2k) Livermore Optical Transient Imaging System (Super- LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA). The object was first detected on 2007 Dec 18.19 and 18.30 with respective magnitudes of 17.2 and 17.4. The position for the nova candidate is RA = 00h41m54.96s, Dec = +41d09'47.3" (J2000, accuracy of 0.3"), which is 9' 17" west and 6' 22" south of the core of M 31.

  8. AcEST: BP916880 [AcEST

    Lifescience Database Archive (English)

    Full Text Available -like protein mll6452 OS=Rhizobium loti... 30 5.1 sp|Q3HXX9|NGFV2_HOPST Venom nerve growth factor 2 OS=Hoplo...+ +H +S KRL T + EKA Sbjct: 14 PRRIELLQQAGIEPDRILPADIDETPLRAEHPRSLAKRLSTEKAEKA 60 >sp|Q3HXX9|NGFV2_HOPST Venom nerve...n database search programs, Nucleic Acids Res. 25:3389-3402. Query= BP916880|Adiantum capillus-vener...otein database search programs, Nucleic Acids Res. 25:3389-3402. Query= BP916880|Adiantum capillus-veneris mRNA, clone...YMU001_000093_B06 515 Adiantum capillus-veneris mRNA. clone: YMU001_000093_B06. BP9

  9. AcEST: DK946240 [AcEST

    Lifescience Database Archive (English)

    Full Text Available AQSQGPLGDVYTLERDRHGRHG 339 >tr|A8I028|A8I028_AZOC5 Conserved putative membrane protein OS=Azorhizobium cauli...ation of protein database search programs, Nucleic Acids Res. 25:3389-3402. Query= DK946240|Adiantum capillus-vener...86W6_RHILO Mlr7180 protein OS=Rhizobium loti GN=mlr7... 34 4.2 tr|A8I028|A8I028_AZOC5 Conserved putative...YMU02A01NGRL0011_P03 458 Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_P0...3. 5' end sequence. DK946240 - Show DK946240 Clone id YMU02A01NGRL0011_P03 Library YMU02 Length 458 Definition Adiantum capillus-ve

  10. La crise économique a-t-elle accentué la segmentation du marché du travail et de la protection sociale?

    DEFF Research Database (Denmark)

    Leschke, Janine

    2013-01-01

    Cet article cherche à déterminer si les évolutions du marché du travail et des régimes de protection sociale pendant la crise économique ont perpétué la tendance à la segmentation du marché du travail ou si, au contraire, la crise a atténué certains des clivages apparus au cours des dernières......’autres, ce sont des tendances opposées qui sont apparues. Les femmes, mais surtout les jeunes, demeurent toutefois moins bien lotis. En moyenne, au sein de l’Europe des 27, la protection des jeunes a reculé pendant la première partie de la crise....

  11. AcEST: BP919337 [AcEST

    Lifescience Database Archive (English)

    Full Text Available Q98J83|Q98J83_RHILO Mlr2056 protein OS=Rhizobium loti GN=mlr2... 69 9e-11 tr|Q7NHD2|Q7NHD2_GLOVI Gll2605 protein OS=Gloeobacte...8 2e-10 tr|A1D217|A1D217_NEOFI Putative uncharacterized protein OS=Neosa... 67 3e-10 tr|Q6MY95|Q6MY95_ASPFU Putative uncharacte...IVAVVAALWWWL 245 >tr|Q7NHD2|Q7NHD2_GLOVI Gll2605 protein OS=Gloeobacter violaceus...RRYHEHVEAVKALIPEERLLCFEVVQ--GWEPLCAFLEVDVPGEPFPRIN 176 >tr|A1D217|A1D217_NEOFI Putative uncharacterized protein OS=Neos...: 202 E 202 >tr|B8KSY6|B8KSY6_9GAMM Putative uncharacterized protein OS=gamma proteobacte

  12. Le monde ouvrier dans les romans de Gérard Mordillat : la vie à court terme

    OpenAIRE

    Leclerc, Natalia

    2012-01-01

    Les Vivants et les morts (2004) et Notre part des ténèbres (2008) décrivent la vie précarisée des ouvriers à l’ère de la désindustrialisation, au plan personnel et professionnel. Le temps pour soi se réduit à la sexualité. Les femmes, plus mal loties que les hommes, cumulent emplois ou activités. Ces romans relatent aussi des conflits sociaux : les usines devenues peu compétitives sont bradées à des repreneurs étrangers ; les plans sociaux frappent durement. Le temps du conflit est celui du j...

  13. A space imaging concept based on a 4m structured spun-cast borosilicate monolithic primary mirror

    Science.gov (United States)

    West, S. C.; Bailey, S. H.; Bauman, S.; Cuerden, B.; Granger, Z.; Olbert, B. H.

    2010-07-01

    Lockheed Martin Corporation (LMC) tasked The University of Arizona Steward Observatory (UASO) to conduct an engineering study to examine the feasibility of creating a 4m space telescope based on mature borosilicate technology developed at the UASO for ground-based telescopes. UASO has completed this study and concluded that existing launch vehicles can deliver a 4m monolithic telescope system to a 500 km circular orbit and provide reliable imagery at NIIRS 7-8. An analysis of such an imager based on a lightweight, high-performance, structured 4m primary mirror cast from borosilicate glass is described. The relatively high CTE of this glass is used to advantage by maintaining mirror shape quality with a thermal figuring method. Placed in a 290 K thermal shroud (similar to the Hubble Space Telescope), the orbit averaged figure surface error is 6nm rms when earth-looking. Space-looking optical performance shows that a similar thermal conditioning scheme combined with a 270 K shroud achieves primary mirror distortion of 10 nm rms surface. Analysis shows that a 3-point bipod mount will provide launch survivability with ample margin. The primary mirror naturally maintains its shape at 1g allowing excellent end-to-end pre-launch testing with e.g. the LOTIS 6.5m Collimator. The telescope includes simple systems to measure and correct mirror shape and alignment errors incorporating technologies already proven on the LOTIS Collimator. We have sketched a notional earth-looking 4m telescope concept combined with a wide field TMA concept into a DELTA IV or ATLAS 552 EELV fairing. We have combined an initial analysis of launch and space performance of a special light-weighted honeycomb borosilicate mirror (areal density 95 kg/m2) with public domain information on the existing launch vehicles.

  14. Tolerância de rizóbios de diferentes procedências ao zinco, cobre e cádmio Tolerance of rhizobia genera from different origins to zinc, copper and cadmium

    Directory of Open Access Journals (Sweden)

    Alexandre Matsuda

    2002-03-01

    Full Text Available Sessenta estirpes/isolados dos gêneros Bradyrhizobium, Rhizobium, Sinorhizobium, Mesorhizobium e Azorhizobium, procedentes de diferentes locais (Mata Atlântica, Amazônia, culturas agrícolas e experimentos com metais pesados e de espécies hospedeiras pertencentes às subfamílias Papilionoideae, Mimosoideae e Caesalpinoideae, foram avaliadas quanto à tolerância a Zn, Cu e Cd em meio YMA modificado pela adição de tampões biológicos (HEPES e MES e suplementados com Cu (0 a 60 mg L-1, Cd (0 a 60 mg L-1 e Zn (0 a 1.000 mg L-1. Mediante padrões de crescimento atribuídos às culturas nas diferentes concentrações dos metais, avaliaram-se as concentrações máximas toleradas e as doses tóxicas destes metais para redução de crescimento em 25% (DT25 e 50% (DT50. Não houve influência da procedência na concentração máxima de metal tolerada. A ordem de sensibilidade aos metais, considerando-se as concentrações máximas toleradas, foi Azorhizobium > Rhizobium = Mesorhizobium = Sinorhizobium > Bradyrhizobium. A DT25 e a DT50 foram úteis para diferenciarem estirpes/isolados de um mesmo gênero, que atingiram a mesma concentração máxima tolerada a Zn, Cu e Cd. A ordem de toxicidade dos metais estudados foi Cu > Cd > Zn.Sixty strains/isolates of the genera Bradyrhizobium, Rhizobium, Sinorhizobium, Mesorhizobium and Azorhizobium, isolated from different hosts (legume subfamilies: Papilionoideae, Mimosoideae and Caesalpinoideae and location (Atlantic Forest, Amazon region, crop plantings and heavy metal experiments, were evaluated for Zn, Cu and Cd tolerance in YMA medium modified by the addition of biological buffers (HEPES and MES and supplemented with Cu (0 to 60 mg L-1, Cd (0 to 60 mg L-1, and Zn (0 to 1,000 mg L-1sulphates. Growth standards were applied to evaluate rhizobia cultures growth at different metal concentrations, allowing evaluation of highest tolerated concentrations of Zn, Cu, and Cd and the toxic doses

  15. Dicty_cDB: Contig-U15071-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available 390 |pid:none) Mesorhizobium sp. BNC1, complet... 40 0.22 CP000764_3424( CP000764 |pid:none) Bacillus cereus subsp. cytotoxi...001141 |pid:none) Phaeodactylum tricornutum CCAP 1... 199 3e-49 AY639146_1( AY639146 |pid:none) Nicotiana tabacum proline oxi... Klebsiella pneumoniae 342, comp... 36 5.4 CP001196_2717( CP001196 |pid:none) Oligotropha carboxidovorans..... 208 5e-52 CP000383_713( CP000383 |pid:none) Cytophaga hutchinsonii ATCC 3340... 202 4e-50 AY492003_1( AY492003 |pid:none) Glycin... dehydr... 181 6e-44 AB209472_1( AB209472 |pid:none) Homo sapiens mRNA for Proline oxi

  16. Dicty_cDB: Contig-U06967-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available ... 54 7e-06 CP000389_181( CP000389 |pid:none) Mesorhizobium sp. BNC1 plasmid 1... 54 9e-06 (A8A430) RecName: Full=Isopentenyl...leuca alternifolia isopentenyl... 86 5e-34 DQ839416_1( DQ839416 |pid:none) Camptotheca acuminata plastid is...none) Corynebacterium glutamicum ATCC... 58 4e-07 (Q0RBQ7) RecName: Full=Isopentenyl-diphosphate Delta-isome...contig An08c017... 122 2e-48 AF479816_1( AF479816 |pid:none) Aspergillus nidulans isopentenyl d... 125 6e-48...s i... 103 1e-44 BC116133_1( BC116133 |pid:none) Bos taurus isopentenyl-diphosphate... 103 2e-44 (Q1LZ95) RecName: Full=Isopentenyl

  17. Microbial degradation of N-methyl-2-pyrrolidone in surface water and bacteria responsible for the process.

    Science.gov (United States)

    Růžička, Jan; Fusková, Jana; Křížek, Karel; Měrková, Markéta; Černotová, Alena; Smělík, Michal

    2016-01-01

    Due to widespread utilization in many industrial spheres and agrochemicals, N-methyl-2-pyrrolidone (NMP) is a potential contaminant of different surface water ecosystems. Hence, investigation was made into its aerobic microbial degradability in samples of water from a river, wetland area and spring. The results showed that the compound was degradable in all water types, and that the fastest NMP removal occurred in 4 days in river water, while in the wetland and spring samples the process was relatively slow, requiring several months to complete. Key bacterial degraders were successfully isolated in all cases, and their identification proved that pseudomonads played a major role in NMP degradation in river water, while the genera Rhodococcus and Patulibacter fulfilled a similar task in the wetland sample. Regarding spring water, degrading members of the Mesorhizobium and Rhizobium genera were found. PMID:26877048

  18. Colonization and plant growth promoting characterization of endophytic Pseudomonas chlororaphis strain Zong1 isolated from Sophora alopecuroides root nodules

    Directory of Open Access Journals (Sweden)

    Long Fei Zhao

    2013-01-01

    Full Text Available The endophytic strain Zong1 isolated from root nodules of the legume Sophora alopecuroides was characterized by conducting physiological and biochemical tests employing gfp-marking, observing their plant growth promoting characteristics (PGPC and detecting plant growth parameters of inoculation assays under greenhouse conditions. Results showed that strain Zong1 had an effective growth at 28 ºC after placed at 4-60 ºC for 15 min, had a wide range pH tolerance of 6.0-11.0 and salt tolerance up to 5% of NaCl. Zong1 was resistant to the following antibiotics (µg/mL: Phosphonomycin (100, Penicillin (100 and Ampicillin (100. It could grow in the medium supplemented with 1.2 mmol/L Cu, 0.1% (w/v methylene blue and 0.1-0.2% (w/v methyl red, respectively. Zong1 is closely related to Pseudomonas chlororaphis based on analysis the sequence of 16S rRNA gene. Its expression of the gfp gene indicated that strain Zong1 may colonize in root or root nodules and verified by microscopic observation. Furthermore, co-inoculation with Zong1 and SQ1 (Mesorhizobium sp. showed significant effects compared to single inoculation for the following PGPC parameters: siderophore production, phosphate solubilization, organic acid production, IAA production and antifungal activity in vitro. These results suggest strains P. chlororaphi Zong1 and Mesorhizobium sp. SQ1 have better synergistic or addictive effect. It was noteworthy that each growth index of co-inoculated Zong1+SQ1 in growth assays under greenhouse conditions is higher than those of single inoculation, and showed a significant difference (p < 0.05 when compared to a negative control. Therefore, as an endophyte P. chlororaphis Zong1 may play important roles as a potential plantgrowth promoting agent.

  19. Enhanced Survival and Nodule Occupancy of Pigeon pea Nodulating Rhizobium sp. ST1 expressing fegA Gene of Bradyrhizobium japonicum 61A152

    Directory of Open Access Journals (Sweden)

    G. Archana

    2009-01-01

    Full Text Available Problem statement: Rhizobial isolates belonging to genera (Rhizobium sp. and Mesorhizobium sp. in our laboratory produced only catecholate type of siderophores. Although FhuA and FegA (ferrichrome receptors homologs were found to be present in the sequenced genomes of few rhizobia (e.g., 1 in R. etli and 2 in Mesorhizobium sp. BNC1, laboratory isolates of the corresponding genera failed to utilize ferrichrome, a siderophore which is present in nanomolar concentrations in the soil. This inability was considered as a negative fitness factor with respect to rhizospheric colonization by these rhizobia. Approach: The 2.4 kb fegA gene (encoding ferrichrome receptor was amplified along with its native promoter from Bradyrhizobium japonicum 61A152 and cloned in a broad host range plasmid vector pUCPM18. The plasmid construct pFJ was transferred by conjugation into Rhizobium sp. ST1 to give transconjugant ST1pFJ12. The consequence of FegA expression on the transconjugant was tested under lab and soil conditions, using physiological experiments. Results: Ability of the transconjugant ST1pFJ12 to utilize ferrichrome and expression of a 79 kD protein band on the outer membrane of the transconjugant confirmed FegA expression. Transconjugant ST1pFJ12 exhibited increased growth rate as compared to the parent strain ST1, in minimal media containing ferrichrome as the sole iron source, confirming the positive effect of FegA expression. Inoculation of pigeon pea seedlings with transconjugant ST1pFJ12 led to a marked increase in plant growth parameters as compared to plants inoculated with the parent strain ST1, the effect being more pronounced when Ustilago maydis, a ferrichrome producer was co-inoculated in the systems. Nodule occupancy on pigeon pea plant when inoculated with the transconjugant ST1pFJ12 alone was 57% which increased to 66% when co-inoculated with U. maydis as compared with 37 and 30

  20. Comparative effectiveness of different Rhizobium sp. for improving growth and yield of maize (Zea mays L.

    Directory of Open Access Journals (Sweden)

    Ijaz Mehboob, Zahir Ahmad Zahir, Muhammad Arshad, Muhammad Khalid

    2012-05-01

    Full Text Available During the last couple of decades, it has been demonstrated that rhizobia can associate with roots of non-legumes also without forming true nodules, and can promote their growth by using one or more of the direct or indirect mechanisms of actions. This work examines the growth and yield responses of maize to inoculation with different species of rhizobia, isolated from the root nodules of chickpea (Cicer arietinum L., lentil (Lens culinaris M. and mung bean (Vigna radiata L. in pots and fields. Twenty isolates of rhizobia were isolated from root nodules each of mung bean, lentil and chickpea and were screened under axenic conditions. On the basis of their promising performance under axenic conditions, nine most efficient isolates (three from each legume host were selected, characterized and further evaluated for their growth promoting activities by conducting pot and field experiments. Results of pot experiment revealed that maximum increase in grain yield, 1000 grain weight, N, P and K uptake (up to 47.89, 54.52, 73.46, 84.66 and 59.19% by CRI28, respectively, over un-inoculated control was produced by the isolate of Mesorhizobium ciceri. Whereas, maximum improvement in rest of the parameters was caused by the isolates of Rhizobium phaseoli (i.e. fresh biomass, straw yield and root length up to 36.30% by A18, 25.46% by S6 and 81.89% by A18, respectively over un-inoculated control. Rhizobium leguminosarum isolates came out to be the least effective among the species tested. Similarly, all the selected isolates improved the growth and yield attributing parameters in fields as well but with varying capacity compared with un-inoculated control. The selected isolates of Mesorhizobium ciceri and Rhizobium phaseoli again remained superior compared to the isolates of Rhizobium leguminosarum under field conditions. The results of this study imply that rhizobium species had potential to promote growth and yield of maize but this technology should be

  1. Cloning of nod gene regions from mesquite rhizobia and bradyrhizobia and nucleotide sequence of the nodD gene from mesquite rhizobia.

    Science.gov (United States)

    Thomas, P M; Golly, K F; Virginia, R A; Zyskind, J W

    1995-09-01

    Nitrogen-fixing symbiosis between bacteria and the tree legume mesquite (Prosopis glandulosa) is important for the maintenance of many desert ecosystems. Genes essential for nodulation and for extending the host range to mesquite were isolated from cosmid libraries of Rhizobium (mesquite) sp. strain HW17b and Bradyrhizobium (mesquite) sp. strain HW10h and were shown to be closely linked. All of the cosmid clones of rhizobia that extended the host range of Rhizobium (Parasponia) sp. strain NGR234CS to mesquite also supported nodulation of a Sym- mesquite strain. The cosmid clones of bradyrhizobia that extended the host range of Rhizobium (Parasponia) sp. strain NGR234CS to mesquite were only able to confer nodulation ability in the Sym- mesquite strain if they also contained a nodD-hybridizing region. Subclones containing just the nodD genes of either genus did not extend the host range of Rhizobium (Parasponia) sp. to mesquite, indicating that the nodD gene is insufficient for mesquite nodulation. The nodD gene region is conserved among mesquite-nodulating rhizobia regardless of the soil depth from which they were collected, indicating descent from a common ancestor. In a tree of distance relationships, the NodD amino acid sequence from mesquite rhizobia clusters with homologs from symbionts that can infect both herbaceous and tree legumes, including Rhizobium tropici, Rhizobium leguminosarum bv; phaseoli, Rhizobium loti, and Bradyrhizobium japonicum. PMID:7574650

  2. GRB 091024A and the nature of ultra-long gamma-ray bursts

    International Nuclear Information System (INIS)

    We present a broadband study of gamma-ray burst (GRB) 091024A within the context of other ultra-long-duration GRBs. An unusually long burst detected by Konus-Wind (KW), Swift, and Fermi, GRB 091024A has prompt emission episodes covering ∼1300 s, accompanied by bright and highly structured optical emission captured by various rapid-response facilities, including the 2 m autonomous robotic Faulkes North and Liverpool Telescopes, KAIT, S-LOTIS, and the Sonoita Research Observatory. We also observed the burst with 8 and 10 m class telescopes and determine the redshift to be z = 1.0924 ± 0.0004. We find no correlation between the optical and γ-ray peaks and interpret the optical light curve as being of external origin, caused by the reverse and forward shock of a highly magnetized jet (RB ≈ 100-200). Low-level emission is detected throughout the near-background quiescent period between the first two emission episodes of the KW data, suggesting continued central-engine activity; we discuss the implications of this ongoing emission and its impact on the afterglow evolution and predictions. We summarize the varied sample of historical GRBs with exceptionally long durations in gamma-rays (≳1000 s) and discuss the likelihood of these events being from a separate population; we suggest ultra-long GRBs represent the tail of the duration distribution of the long GRB population.

  3. GRB 091024A and the nature of ultra-long gamma-ray bursts

    CERN Document Server

    Virgili, F J; Pal'shin, V; Guidorzi, C; Margutti, R; Melandri, A; Harrison, R; Kobayashi, S; Chornock, R; Henden, A; Updike, A C; Cenko, S B; Tanvir, N R; Steele, I A; Cucchiara, A; Gomboc, A; Levan, A; Cano, Z; Mottram, C J; Clay, N R; Bersier, D; Kopac, D; Japelj, J; Filippenko, A V; Li, W; Svinkin, D; Golenetskii, S; Hartmann, D H; Milne, P A; Williams, G; O'Brien, P T; Fox, D B; Berger, E

    2013-01-01

    We present a broadband study of gamma-ray burst (GRB) 091024A within the context of other ultra-long-duration GRBs. An unusually long burst detected by Konus-Wind, Swift, and Fermi, GRB 091024A has prompt emission episodes covering ~1300 s, accompanied by bright and highly structured optical emission captured by various rapid-response facilities, including the 2-m autonomous robotic Faulkes North and Liverpool Telescopes, KAIT, S-LOTIS, and SRO. We also observed the burst with 8- and 10-m class telescopes and determine the redshift to be z = 1.0924 \\pm 0.0004. We find no correlation between the optical and gamma-ray peaks and interpret the optical light curve as being of external origin, caused by the reverse and forward shock of a highly magnetized jet (R_B ~ 100-200). Low-level emission is detected throughout the near-background quiescent period between the first two emission episodes of the Konus-Wind data, suggesting continued central-engine activity; we discuss the implications of this ongoing emission a...

  4. Climatic irregular staircases: generalized acceleration of global warming.

    Science.gov (United States)

    De Saedeleer, Bernard

    2016-01-01

    Global warming rates mentioned in the literature are often restricted to a couple of arbitrary periods of time, or of isolated values of the starting year, lacking a global view. In this study, we perform on the contrary an exhaustive parametric analysis of the NASA GISS LOTI data, and also of the HadCRUT4 data. The starting year systematically varies between 1880 and 2002, and the averaging period from 5 to 30 yr - not only decades; the ending year also varies . In this way, we uncover a whole unexplored space of values for the global warming rate, and access the full picture. Additionally, stairstep averaging and linear least squares fitting to determine climatic trends have been sofar exclusive. We propose here an original hybrid method which combines both approaches in order to derive a new type of climatic trend. We find that there is an overall acceleration of the global warming whatever the value of the averaging period, and that 99.9% of the 3029 Earth's climatic irregular staircases are rising. Graphical evidence is also given that choosing an El Niño year as starting year gives lower global warming rates - except if there is a volcanic cooling in parallel. Our rates agree and generalize several results mentioned in the literature. PMID:26813867

  5. Long term observations of B2 1215+30 with veritas

    Energy Technology Data Exchange (ETDEWEB)

    Aliu, E.; Errando, M. [Department of Physics and Astronomy, Barnard College, Columbia University, NY 10027 (United States); Archambault, S. [Physics Department, McGill University, Montreal, QC H3A 2T8 (Canada); Arlen, T.; Aune, T. [Department of Physics and Astronomy, University of California, Los Angeles, CA 90095 (United States); Beilicke, M.; Buckley, J. H.; Bugaev, V. [Department of Physics, Washington University, St. Louis, MO 63130 (United States); Benbow, W. [Fred Lawrence Whipple Observatory, Harvard-Smithsonian Center for Astrophysics, Amado, AZ 85645 (United States); Bird, R. [School of Physics, University College Dublin, Belfield, Dublin 4 (Ireland); Bouvier, A. [Santa Cruz Institute for Particle Physics and Department of Physics, University of California, Santa Cruz, CA 95064 (United States); Cesarini, A.; Connolly, M. P. [School of Physics, National University of Ireland Galway, University Road, Galway (Ireland); Ciupik, L. [Astronomy Department, Adler Planetarium and Astronomy Museum, Chicago, IL 60605 (United States); Cui, W.; Feng, Q.; Finley, J. P. [Department of Physics, Purdue University, West Lafayette, IN 47907 (United States); Dumm, J. [School of Physics and Astronomy, University of Minnesota, Minneapolis, MN 55455 (United States); Falcone, A. [Department of Astronomy and Astrophysics, 525 Davey Lab, Pennsylvania State University, University Park, PA 16802 (United States); Federici, S., E-mail: heike.prokoph@desy.de [DESY, Platanenallee 6, D-15738 Zeuthen (Germany); Collaboration: VERITAS collaboration; and others

    2013-12-20

    We report on VERITAS observations of the BL Lac object B2 1215+30 between 2008 and 2012. During this period, the source was detected at very high energies (VHEs; E > 100 GeV) by VERITAS with a significance of 8.9σ and showed clear variability on timescales larger than months. In 2011, the source was found to be in a relatively bright state and a power-law fit to the differential photon spectrum yields a spectral index of 3.6 ± 0.4{sub stat} ± 0.3{sub syst} with an integral flux above 200 GeV of (8.0 ± 0.9{sub stat} ± 3.2{sub syst}) × 10{sup –12} cm{sup –2} s{sup –1}. No short term variability could be detected during the bright state in 2011. Multi-wavelength data were obtained contemporaneously with the VERITAS observations in 2011 and cover optical (Super-LOTIS, MDM, Swift/UVOT), X-ray (Swift/XRT), and gamma-ray (Fermi-LAT) frequencies. These were used to construct the spectral energy distribution (SED) of B2 1215+30. A one-zone leptonic model is used to model the blazar emission and the results are compared to those of MAGIC from early 2011 and other VERITAS-detected blazars. The SED can be reproduced well with model parameters typical for VHE-detected BL Lac objects.

  6. GRB 091024A and the nature of ultra-long gamma-ray bursts

    Energy Technology Data Exchange (ETDEWEB)

    Virgili, F. J.; Mundell, C. G.; Harrison, R.; Kobayashi, S.; Steele, I. A.; Mottram, C. J.; Clay, N. R. [Astrophysics Research Institute, Liverpool John Moores University, Liverpool, L3 5RF (United Kingdom); Pal' shin, V. [Ioffe Physical Technical Institute, St. Petersburg 194021 (Russian Federation); Guidorzi, C. [Department of Physics and Earth Sciences, University of Ferrara, Via Saragat, 1, I-44122 Ferrara (Italy); Margutti, R.; Chornock, R. [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Melandri, A. [INAF/Brera Astronomical Observatory, via Bianchi 46, I-23807 Merate (Italy); Henden, A. [AAVSO, 49 Bay State Road, Cambridge, MA 02138 (United States); Updike, A. C. [Department of Chemistry and Physics, Roger Williams University, Bristol, RI 02809 (United States); Cenko, S. B. [Department of Astronomy, University of California, Berkeley, CA 94720-3411 (United States); Tanvir, N. R. [Department of Physics and Astronomy, University of Leicester, University Road, Leicester LE1 7RH (United Kingdom); Cucchiara, A. [Department of Astronomy and Astrophysics, UCO/Lick Observatory, University of California, 1156 High Street, Santa Cruz, CA 95064 (United States); Gomboc, A. [Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, 1000 Ljubljana (Slovenia); Levan, A. [Department of Physics, University of Warwick, Coventry CV4 7AL (United Kingdom); Cano, Z., E-mail: F.J.Virgili@ljmu.ac.uk [Centre for Astrophysics and Cosmology, Science Institute, University of Iceland, 107 Reykjavik (Iceland); and others

    2013-11-20

    We present a broadband study of gamma-ray burst (GRB) 091024A within the context of other ultra-long-duration GRBs. An unusually long burst detected by Konus-Wind (KW), Swift, and Fermi, GRB 091024A has prompt emission episodes covering ∼1300 s, accompanied by bright and highly structured optical emission captured by various rapid-response facilities, including the 2 m autonomous robotic Faulkes North and Liverpool Telescopes, KAIT, S-LOTIS, and the Sonoita Research Observatory. We also observed the burst with 8 and 10 m class telescopes and determine the redshift to be z = 1.0924 ± 0.0004. We find no correlation between the optical and γ-ray peaks and interpret the optical light curve as being of external origin, caused by the reverse and forward shock of a highly magnetized jet (R{sub B} ≈ 100-200). Low-level emission is detected throughout the near-background quiescent period between the first two emission episodes of the KW data, suggesting continued central-engine activity; we discuss the implications of this ongoing emission and its impact on the afterglow evolution and predictions. We summarize the varied sample of historical GRBs with exceptionally long durations in gamma-rays (≳1000 s) and discuss the likelihood of these events being from a separate population; we suggest ultra-long GRBs represent the tail of the duration distribution of the long GRB population.

  7. STEROWANIE PROCESEM SZKOLENIA NA SYMULATORACH LOTNICZYCH W OPARCIU O CHARAKTERYZUJĄCE GO WIELKOŚCI

    Directory of Open Access Journals (Sweden)

    Barszcz Piotr

    2015-12-01

    Full Text Available Lot samolotu bojowego przebiega w dynamicznie zmieniającym się otoczeniu, gdzie główną rolę w procesie podejmowania decyzji odgrywa odpowiednio przygotowany pilot, a szczególnie jego percepcja. W artykule przedstawiono analizy wykonane w oparciu o wyniki badań przeprowadzonych na określonej populacji podchorążych oraz pilotów, którzy wykonywali loty na symulatorach lotniczych. Badania prowadzono, mierząc czas reakcji na wprowadzane sytuacje awaryjne oraz określano liczbę popełnianych błędów. Na podstawie analizy korelacji cech charakteryzujących poziom wyszkolenia kandydata na pilota oraz wyszkolonego pilota, znając funkcje rozkładu prawdopodobieństwa tych cech, można szacować, jakie wyniki powinien osiągać podchorąży podczas wykonywania określonego ćwiczenia, aby system szkoleniowy dał zamierzone efekty podczas wykonywania zadań w samolocie, na którym docelowo będzie latał.

  8. New optical nova candidate in M 31

    Science.gov (United States)

    Pietsch, W.; Henze, M.; Burwitz, V.; Kaur, A.; Hartmann, D. H.; Milne, P.; Williams, G.

    2010-12-01

    We report the discovery of a possible nova in M 31 on a 12x60s stacked R filter CCD image obtained with the robotic 60cm telescope with an E2V CCD (2kx2k, 13.5 micron sq. pixels) of the Livermore Optical Transient Imaging System (Super-LOTIS, located at Steward Observatory, Kitt Peak, Arizona, USA) on 2010 December 11.095 UT with magnitude of 16.6. The object is visible on all individual images. The position for the nova candidate is RA = 00h42m31.08s, Dec = +41d27'20.3"(J2000, accuracy of 0.3"), which is 149" west and 672" north of the core of M 31. We do not detect the object on a 4x60s stacked SLOTIS CCD image obtained on2010 December 5.213 UT (limiting R magnitude at the position of 19.0). There is no entry in VizieR/CDS for this object and no minor planet could be found on this position using the MPC/IAU Minor Planet Checker (see http://scully.harvard.edu/~cgi/CheckMP) . All magnitudes given are obtained from a photometric solution using R magnitudes of the Local Group Survey M 31 catalogue (Massey et al.

  9. Long term observations of B2 1215+30 with VERITAS

    CERN Document Server

    Aliu, E; Arlen, T; Aune, T; Beilicke, M; Benbow, W; Bird, R; Bouvier, A; Buckley, J H; Bugaev, V; Cesarini, A; Ciupik, L; Connolly, M P; Cui, W; Dumm, J; Errando, M; Falcone, A; Federici, S; Feng, Q; Finley, J P; Fortin, P; Fortson, L; Furniss, A; Galante, N; Gérard, L; Gillanders, G H; Griffin, S; Grube, J; Gyuk, G; Hanna, D; Holder, J; Hughes, G; Humensky, T B; Kaaret, P; Kertzman, M; Khassen, Y; Kieda, D; Krawczynski, H; Krennrich, F; Lang, M J; Madhavan, A S; Maier, G; Majumdar, P; McArthur, S; McCann, A; Moriarty, P; Mukherjee, R; Nieto, D; de Bhróithe, A O'Faoláin; Ong, R A; Orr, M; Otte, A N; Park, N; Perkins, J S; Pohl, M; Popkow, A; Prokoph, H; Quinn, J; Ragan, K; Reyes, L C; Reynolds, P T; Richards, G T; Roache, E; Saxon, D B; Sembroski, G H; Skole, C; Smith, A W; Soares-Furtado, M; Staszak, D; Telezhinsky, I; Tešić, G; Theiling, M; Varlotta, A; Vassiliev, V V; Vincent, S; Wakely, S P; Weekes, T C; Weinstein, A; Welsing, R; Williams, D A; Zitzer, B; Böttcher, M; Fumagalli, M; Jadhav, J

    2013-01-01

    We report on VERITAS observations of the BL Lac object B2 1215+30 between 2008 and 2012. During this period, the source was detected at very high energies (VHE; E > 100 GeV) by VERITAS with a significance of $8.9\\sigma$ and showed clear variability on time scales larger than months. In 2011, the source was found to be in a relatively bright state and a power-law fit to the differential photon spectrum yields a spectral index of $3.6 \\pm 0.4_{\\mathrm{stat}} \\pm 0.3_{\\mathrm{syst}}$ with an integral flux above 200 GeV of $(8.0 \\pm 0.9_{\\mathrm{stat}} \\pm 3.2_{\\mathrm{syst}}) \\times 10^{-12}\\, \\mathrm{cm}^{-2} \\mathrm{s}^{-1}$. No short term variability could be detected during the bright state in 2011. Multi-wavelength data were obtained contemporaneous with the VERITAS observations in 2011 and cover optical (Super-LOTIS, MDM, Swift-UVOT), X-ray (Swift-XRT), and gamma-ray (Fermi-LAT) frequencies. These were used to construct the spectral energy distribution (SED) of B2 1215+30. A one-zone leptonic model is used...

  10. Investigating Broadband Variability of the TeV Blazar 1ES 1959+650

    CERN Document Server

    Aliu, E; Arlen, T; Aune, T; Barnacka, A; Beilicke, M; Benbow, W; Berger, K; Bird, R; Bouvier, A; Buckley, J H; Bugaev, V; Cerruti, M; Chen, X; Ciupik, L; Collins-Hughes, E; Connolly, M P; Cui, W; Dumm, J; Eisch, J D; Falcone, A; Federici, S; Feng, Q; Finley, J P; Fleischhack, H; Fortin, P; Fortson, L; Furniss, A; Galante, N; Gillanders, G H; Griffin, S; Griffiths, S T; Grube, J; Gyuk, G; Hakansson, N; Hanna, D; Holder, J; Hughes, G; Humensky, T B; Johnson, C A; Kaaret, P; Kar, P; Kertzman, M; Khassen, Y; Kieda, D; Krawczynski, H; Krennrich, F; Lang, M J; Madhavan, A S; Majumdar, P; McArthur, S; McCann, A; Meagher, K; Millis, J; Moriarty, P; Mukherjee, R; Nelson, T; Nieto, D; de Bhroithe, A O'Faolain; Ong, R A; Otte, A N; Park, N; Perkins, J S; Pohl, M; Popkow, A; Prokoph, H; Quinn, J; Ragan, K; Rajotte, J; Reyes, L C; Reynolds, P T; Richards, G T; Roache, E; Sadun, A; Santander, M; Sembroski, G H; Shahinyan, K; Sheidaei, F; Smith, A W; Staszak, D; Telezhinsky, I; Theiling, M; Tyler, J; Varlotta, A; Vassiliev, V V; Vincent, S; Wakely, S P; Weekes, T C; Weinstein, A; Welsing, R; Wilhelm, A; Williams, D A; Zitzer, B; Böttcher, M; Fumagalli, M

    2014-01-01

    We summarize broadband observations of the TeV-emitting blazar 1ES 1959+650, including optical R-band observations by the robotic telescopes Super-LOTIS and iTelescope, UV observations by Swift UVOT, X-ray observations by the Swift X-ray Telescope (XRT), high-energy gamma-ray observations with the Fermi Large Area Telescope (LAT) and very-high-energy (VHE) gamma-ray observations by VERITAS above 315 GeV, all taken between 17 April 2012 and 1 June 2012 (MJD 56034 and 56079). The contemporaneous variability of the broadband spectral energy distribution is explored in the context of a simple synchrotron self Compton (SSC) model. In the SSC emission scenario, we find that the parameters required to represent the high state are significantly different than those in the low state. Motivated by possible evidence of gas in the vicinity of the blazar, we also investigate a reflected-emission model to describe the observed variability pattern. This model assumes that the non-thermal emission from the jet is reflected b...

  11. Ielejveida iegrauzumu ietekme uz pazemes ūdeņu apriti aktīvās ūdens apmaiņas zonā Latvijā

    OpenAIRE

    Dūdiņa, Kristīne

    2016-01-01

    Maģistra darbā pētīta ielejveida iegrauzumu ietekme uz pazemes ūdeņu apriti aktīvās ūdens apmaiņas zonā Latvijas teritorijā, pielietojot hidroģeoloģisko modelēšanu. Pētījumā veikts pazemes ūdens plūsmas daļiņu aprēķins, izmantojot Python programmēšanas valodu un skriptus. Daļiņu ievades punkti gan laterālā, gan vertikālā virzienā tika definēti 3D hidroģeoloģiskā Baltijas Artēziskā baseina modeļa struktūrā. Rezultāti analizēti un attēloti ar datorprogrammu MS Excel un Qgis 2.14.2. Essen palīdz...

  12. Effects of biotic and abiotic constraints on the symbiosis between rhizobia and the tropical leguminous trees Acacia and Prosopis.

    Science.gov (United States)

    Räsänen, Leena A; Lindström, Kristina

    2003-10-01

    N2-fixing, drought tolerant and multipurpose Acacia and Prosopis species are appropriate trees for reforestation of degraded areas in arid and semiarid regions of the tropics and subtropics. Acacia and Prosopis trees form N2-fixing nodules with a wide range of rhizobia, for example African acacias mainly with Sinorhizobium sp. and Mesorhizobium sp., and Australian acacias with Bradyrhizobium sp. Although dry and hot seasons restrict formation of N2-fixing nodules on Acacia and Prosopis spp., fully grown trees and their symbiotic partners are well adapted to survive in harsh growth conditions. This review on one hand deals with major constraints of arid and semiarid soils, i.e. drought, salinity and high soil temperature, which affect growth of trees and rhizobia, and on the other hand with adaptation mechanisms by which both organisms survive through unfavourable periods. In addition, defects in infection and nodulation processes due to various abiotic and biotic constraints are reviewed. This knowledge is important when Acacia and Prosopis seedlings are used for forestation of degraded areas in arid and semiarid tropics. PMID:15242281

  13. Robust markers reflecting phylogeny and taxonomy of rhizobia.

    Directory of Open Access Journals (Sweden)

    Yan Ming Zhang

    Full Text Available Genomic ANI (Average Nucleotide Identity has been found to be able to replace DNA-DNA hybridization in prokaryote taxonomy. The ANI of each of the core genes that has a phylogeny congruent with the reference species tree of rhizobia was compared to the genomic ANI. This allowed us to identify three housekeeping genes (SMc00019-truA-thrA whose ANI reflected the intraspecies and interspecies genomic ANI among rhizobial strains, revealing an ANI gap (≥2% between the inter- and intra-species comparisons. The intraspecies (96% and interspecies (94% ANI boundaries calculated from three genes (SMc00019-truA-thrA provided a criterion for bacterial species definition and confirmed 621/629 of known interspecies relationships within Bradyrhizobium, Mesorhizobium, Sinorhizobium and Rhizobium. Some widely studied strains should be renamed. The SMc00019-truA-thrA ANI also correlates well with the genomic ANI of strains in Agrobacterium, Methylobacterium, Ralstonia, Rhodopseudomonas, Cupriavidus and Burkholderia, suggesting their wide applicability in other bacteria.

  14. Genomic analyses of metal resistance genes in three plant growth promoting bacteria of legume plants in Northwest mine tailings, China

    Institute of Scientific and Technical Information of China (English)

    Pin Xie; Xiuli Hao; Martin Herzberg; Yantao Luo; Dietrich H.Nies; Gehong Wei

    2015-01-01

    To better understand the diversity of metal resistance genetic determinant from microbes that survived at metal tailings in northwest of China,a highly elevated level of heavy metal containing region,genomic analyses was conducted using genome sequence of three native metal-resistant plant growth promoting bacteria (PGPB).It shows that:Mesorhizobium amorphae CCNWGS0123 contains metal ~nsporters from P-type ATPase,CDF (Cation Diffusion Facilitator),HupE/UreJ and CHR (chromate ion transporter) family involved in copper,zinc,nickel as well as chromate resistance and homeostasis.Meanwhile,the putative CopA/CueO system is expected to mediate copper resistance in Sinorhizobium meliloti CCNWSX0020 while ZntA transporter,assisted with putative CzcD,determines zinc tolerance in Agrobacterium tumefaciens CCNWGS0286.The greenhouse experiment provides the consistent evidence of the plant growth promoting effects of these microbes on their hosts by nitrogen fixation and/or indoleacetic acid (IAA) secretion,indicating a potential in-site phytoremediation usage in the mining tailing regions of China.

  15. Functional profiling and distribution of the forest soil bacterial communities along the soil mycorrhizosphere continuum.

    Science.gov (United States)

    Uroz, S; Courty, P E; Pierrat, J C; Peter, M; Buée, M; Turpault, M P; Garbaye, J; Frey-Klett, P

    2013-08-01

    An ectomycorrhiza is a multitrophic association between a tree root, an ectomycorrhizal fungus, free-living fungi and the associated bacterial communities. Enzymatic activities of ectomycorrhizal root tips are therefore result of the contribution from different partners of the symbiotic organ. However, the functional potential of the fungus-associated bacterial communities remains unknown. In this study, a collection of 80 bacterial strains randomly selected and isolated from a soil-ectomycorrhiza continuum (oak-Scleroderma citrinum ectomycorrhizas, the ectomycorrhizosphere and the surrounding bulk soil) were characterized. All the bacterial isolates were identified by partial 16S rRNA gene sequences as members of the genera Burkholderia, Collimonas, Dyella, Mesorhizobium, Pseudomonas, Rhizobium and Sphingomonas. The bacterial strains were then assayed for β-xylosidase, β-glucosidase, N-acetyl-hexosaminidase, β-glucuronidase, cellobiohydrolase, phosphomonoesterase, leucine-aminopeptidase and laccase activities, chitin solubilization and auxin production. Using these bioassays, we demonstrated significant differences in the functional distribution of the bacterial communities living in the different compartments of the soil-ectomycorrhiza continuum. The surrounding bulk soil was significantly enriched in bacterial isolates capable of hydrolysing cellobiose and N-acetylglucosamine. In contrast, the ectomycorrhizosphere appeared significantly enriched in bacterial isolates capable of hydrolysing glucopyranoside and chitin. Notably, chitinase and laccase activities were found only in bacterial isolates belonging to the Collimonas and Pseudomonas genera. Overall, the results suggest that the ectomycorrhizal fungi favour specific bacterial communities with contrasting functional characteristics from the surrounding soil. PMID:23455431

  16. Characterization and phylogenetic analysis of biosurfactant-producing bacteria isolated from palm oil contaminated soils

    Directory of Open Access Journals (Sweden)

    Kanokrat Saisa-ard

    2014-04-01

    Full Text Available Biosurfactant-producing bacteria were isolated from 89 different soil samples contaminated with palm oil in 35 palm oil industry sites in the south of Thailand. The phylogenetic diversity of the isolates was evaluated by 16S rRNA gene analysis. Among 1,324 colonies obtained, 134 isolates released extracellular biosurfactant when grown on low-cost substrates by a drop collapsing test. Among these, the 53 isolates that showed the highest biosurfactant production on different substrates were found to belong to 42 different bacterial genera. Among these sixteen (Caryophanon; Castellaniella; Filibacter; Geminicoccus; Georgenia; Luteimonas; Mesorhizobium; Mucilaginibacter; Nubsella; Paracoccus; Pedobacter; Psychrobacter; Rahnella; Sphingobium; Sphingopyxis and Sporosarcina were first reported as biosurfactant-producing strains. By using low-cost, agro-industrial by-products or wastes, Azorhizobium doebereinerae AS54 and Geminicoccus roseus AS73 produced extracellular biosurfactant, which exhibited the lowest surface tension reduction (25.5 mN/m and highest emulsification activity (69.0% when palm oil decanter cake and used palm oil was used as a carbon sources, respectively. Overall, this is the first study of a phylogenetic analysis of biosurfactant-producing bacteria from palm oil refinery industry site and their ability to produce biosurfactant on renewable substrates.

  17. Rhizobial characterization in revegetated areas after bauxite mining

    Directory of Open Access Journals (Sweden)

    Wardsson Lustrino Borges

    2016-06-01

    Full Text Available Abstract Little is known regarding how the increased diversity of nitrogen-fixing bacteria contributes to the productivity and diversity of plants in complex communities. However, some authors have shown that the presence of a diverse group of nodulating bacteria is required for different plant species to coexist. A better understanding of the plant symbiotic organism diversity role in natural ecosystems can be extremely useful to define recovery strategies of environments that were degraded by human activities. This study used ARDRA, BOX-PCR fingerprinting and sequencing of the 16S rDNA gene to assess the diversity of root nodule nitrogen-fixing bacteria in former bauxite mining areas that were replanted in 1981, 1985, 1993, 1998, 2004 and 2006 and in a native forest. Among the 12 isolates for which the 16S rDNA gene was partially sequenced, eight, three and one isolate(s presented similarity with sequences of the genera Bradyrhizobium, Rhizobium and Mesorhizobium, respectively. The richness, Shannon and evenness indices were the highest in the area that was replanted the earliest (1981 and the lowest in the area that was replanted most recently (2006.

  18. Consistent Occurrence of Hydrocarbonoclastic Marinobacter Strains in Various Cultures of Picocyanobacteria from the Arabian Gulf: Promising Associations for Biodegradation of Marine Oil Pollution.

    Science.gov (United States)

    Al-Wahaib, Dhuha; Al-Bader, Dhia; Al-Shaikh Abdou, Dana K; Eliyas, Mohamed; Radwan, Samir S

    2016-01-01

    Fifteen nonaxenic cultures of picocyanobacteria were isolated from the Arabian Gulf, from which 122 heterotrophic bacterial strains were obtained. Based on their 16S rRNA gene sequences, those strains were affiliated with 22 different species, 82.8% of which belonged to the genus Marinobacter, known to comprise hydrocarbonoclastic strains. The remaining species belonged to the genera Alcanivorax, Bacillus, Halomonas, Mesorhizobium, and Paenibacillus, and a Bacteriodetes bacterium also known to comprise hydrocarbonoclastic strains. All the picocyanobacterial cultures harbored one or more strains of Marinobacter. Marinobacter in addition to Alcanivorax and other genera isolated from those picocyanobacteria grew on Tween 80, crude oil, and pure hydrocarbons as sole sources of carbon and energy, i.e. they are related to the obligate hydrocarbonoclastic bacteria group. They consumed crude oil, n-octadecane, and phenanthrene in batch cultures. The results indicated that Marinobacter isolates seemed to grow better and consume more oil in the presence of their host picocyanobacteria than in their absence. Such natural microbial associations assumingly play a role in bioremediation of spilled hydrocarbons in the Arabian Gulf. Similar associations probably occur in other marine environments as well and are active in oil spill removal. PMID:27165413

  19. Impact of the energy crop Jatropha curcas L. on the composition of rhizobial populations nodulating cowpea (Vigna unguiculata L.) and acacia (Acacia seyal L.).

    Science.gov (United States)

    Dieng, Amadou; Duponnois, Robin; Floury, Antoine; Laguerre, Gisèle; Ndoye, Ibrahima; Baudoin, Ezékiel

    2015-03-01

    Jatropha curcas, a Euphorbiaceae species that produces many toxicants, is increasingly planted as an agrofuel plant in Senegal. The purpose of this study was to determine whether soil priming induced by J. curcas monoculture could alter the rhizobial populations that nodulate cowpea and acacia, two locally widespread legumes. Soil samples were transferred into a greenhouse from three fields previously cultivated with Jatropha for 1, 2, and 15 years, and the two trap legumes were grown in them. Control soil samples were also taken from adjacent Jatropha-fallow plots. Both legumes tended to develop fewer but larger nodules when grown in Jatropha soils. Nearly all the nifH sequences amplified from nodule DNA were affiliated to the Bradyrhizobium genus. Only sequences from Acacia seyal nodules grown in the most recent Jatropha plantation were related to the Mesorhizobium genus, which was much a more conventional finding on A. seyal than the unexpected Bradyrhizobium genus. Apart from this particular case, only minor differences were found in the respective compositions of Jatropha soil versus control soil rhizobial populations. Lastly, the structure of these rhizobial populations was systematically imbalanced owing to the overwhelming dominance of a very small number of nifH genotypes, some of which were identical across soil types or even sites. Despite these weak and sparse effects on rhizobial diversity, future investigations should focus on the characterization of the nitrogen-fixing abilities of the predominant rhizobial strains. PMID:25466917

  20. The Diversity and Co-occurrence Patterns of N₂-Fixing Communities in a CO₂-Enriched Grassland Ecosystem.

    Science.gov (United States)

    Tu, Qichao; Zhou, Xishu; He, Zhili; Xue, Kai; Wu, Liyou; Reich, Peter; Hobbie, Sarah; Zhou, Jizhong

    2016-04-01

    Diazotrophs are the major organismal group responsible for atmospheric nitrogen (N2) fixation in natural ecosystems. The extensive diversity and structure of N2-fixing communities in grassland ecosystems and their responses to increasing atmospheric CO2 remain to be further explored. Through pyrosequencing of nifH gene amplicons and extraction of nifH genes from shotgun metagenomes, coupled with co-occurrence ecological network analysis approaches, we comprehensively analyzed the diazotrophic community in a grassland ecosystem exposed to elevated CO2 (eCO2) for 12 years. Long-term eCO2 increased the abundance of nifH genes but did not change the overall nifH diversity and diazotrophic community structure. Taxonomic and phylogenetic analysis of amplified nifH sequences suggested a high diversity of nifH genes in the soil ecosystem, the majority belonging to nifH clusters I and II. Co-occurrence ecological network analysis identified different co-occurrence patterns for different groups of diazotrophs, such as Azospirillum/Actinobacteria, Mesorhizobium/Conexibacter, and Bradyrhizobium/Acidobacteria. This indicated a potential attraction of non-N2-fixers by diazotrophs in the soil ecosystem. Interestingly, more complex co-occurrence patterns were found for free-living diazotrophs than commonly known symbiotic diazotrophs, which is consistent with the physical isolation nature of symbiotic diazotrophs from the environment by root nodules. The study provides novel insights into our understanding of the microbial ecology of soil diazotrophs in natural ecosystems. PMID:26280746

  1. Diversity of endophytic bacteria associated with nodules of two indigenous legumes at different altitudes of the Qilian Mountains in China.

    Science.gov (United States)

    Xu, Lin; Zhang, Yong; Wang, Li; Chen, Weimin; Wei, Gehong

    2014-09-01

    A total of 201 endophytic root nodule-associated bacteria collected from two legumes indigenous to different Qilian Mountain altitudes (Hexi Corridor) were characterized through 16S rDNA polymerase chain reaction (PCR)-restriction fragment length polymorphism, 16S rRNA gene sequence analysis, and enterobacterial repetitive intergenic consensus-PCR clustering. The isolates phylogenetically belonged to 35 species in the Phyllobacterium, Ensifer, Rhizobium, Microvirga, Sphingomonas, Paracoccus, Mycobacterium, Paenibacillus, Cohnella, Sporosarcina, Bacillus, Staphylococcus, Brevibacterium, Xenophilus, Erwinia, Leclercia, Acinetobacter, and Pseudomonas genera. Phylogenetic nodA sequence analysis showed higher similarity to Sinorhizobium meliloti with strains related to the Rhizobium, Sinorhizobium, and Acinetobacter genera. Sequence analysis of the nifH gene revealed that the strains belonging to Xenophilus, Acinetobacter, Phyllobacterium, and Rhizobium had genes similar to those of Mesorhizobium and Sinorhizobium. The results indicated that horizontal gene transfer could have occurred between rhizobia and non-rhizobial endophytes. Canonical correspondence analysis revealed that altitude and host plant species contributed more to the bacterial endosymbiont separation than other ecological factors. This study provided valuable information on the interactions between symbiotic bacteria, non-symbiotic bacteria and their habitats, and thus provided knowledge on their genetic diversity and ecology. PMID:24985194

  2. Phylogenetic Diversity of Ammopiptanthus Rhizobia and Distribution of Rhizobia Associated with Ammopiptanthus mongolicus in Diverse Regions of Northwest China.

    Science.gov (United States)

    Zhao, Liang; Wang, Xinye; Huo, Haibo; Yuan, Guiji; Sun, Yali; Zhang, Dehui; Cao, Ying; Xu, Lin; Wei, Gehong

    2016-07-01

    Aiming to investigate the diversity and distribution of rhizobia associated with Ammopiptanthus, an endangered evergreen legume widely distributed in deserts, we characterized a total of 219 nodule isolates from nine sampling sites in Northwest China with different soil characteristics based upon restriction fragment length polymorphism (RFLP) analysis of 16S ribosomal RNA (rRNA) and symbiotic genes (nodC and nifH). Ten isolates representing different 16S rRNA-RFLP types were selected for further sequence analyses of 16S rRNA and four housekeeping genes. As results, nine genospecies belonging to the genera Ensifer, Neorhizobium, Agrobacterium, Pararhizobium, and Rhizobium could be defined among the isolates. The nodC and nifH phylogenies of 14 isolates representing different symbiotic-RFLP types revealed five lineages linked to Ensifer fredii, Ensifer meliloti, Rhizobium leguminosarum, Mesorhizobium amorphae, and Rhizobium gallicum, which demonstrated the various origins and lateral transfers of symbiotic genes between different genera and species. The rhizobial diversities of Ammopiptanthus mongolicus varied among regions, and the community compositions of rhizobia associated with A. mongolicus were significantly different in wild and cultured fields. Constrained correspondence analysis showed that the distribution of A. mongolicus rhizobia could be explained by available potassium content and that the assembly of symbiotic types was mainly affected by available phosphorus content and carbon-nitrogen ratio. PMID:27079453

  3. Complementation analyses of Sinorhizobium meliloti nifA mutant with different originated nifA genes

    Institute of Scientific and Technical Information of China (English)

    YAO Zhenhua; R(U)VERG Silvia; WANG Yiping; ZOU Huasong; TIAN Zhexian; DAI Xiaomi; BECKER Anke; LI Jian; YAN Haiqin; XIAO Yan; ZHU Jiabi; YU Guanqiao

    2006-01-01

    A previous work inferred that the nifA gene of Enterobacter cloacae did not restore the symbiotic phenotype of Sinorhizobium meliloti nifA mutant. In the present study, two nifA genes of Bradyrhizobium japonicum and Mesorhizobium huakuii also did not restore the symbiotic phenotype of S.meliloti nifA mutant. In whole genomic microarray experiments, 238 genes were found to be differentially expressed after S. meliloti nifA had been constitutively expressed in its nifA mutant. In contrast,only 20, 7 and 9 genes changed their transcriptional levels when expressing B. japonium, M. huakuii and Enterobacter cloacae nifA genes in Sm nifA mutant,separately. These genes were classified into several functional groups including house keeping, energy and central intermediary metabolism, transport systems and symbiosis. Interestingly, the genes that of nifH operons showed high expression levels in the presence of either B. japonium or M. huakuii NifA,which was confirmed by subsequent lacZ fusion experiments.

  4. [Analysis of Symbiotic Genes of Leguminous Plants Nodule Bacteria Grown in the Southern Urals].

    Science.gov (United States)

    Baymiev, An Kh; Ivanova, E S; Gumenko, R S; Chubukova, O V; Baymiev, Al Kh

    2015-12-01

    Bacterial strains isolated from the nodules, tissues, and root surface of wild legumes growing in the Southern Urals related to the tribes Galegeae, Hedysareae, Genisteae, Trifolieae, and Loteae were examined for the presence in their genomes of symbiotic (sym) genes. It was found that the sym-genes are present in microorganisms isolated only from the nodules of the analyzed plants (sym+ -strains). Phylogenetic analysis of sym+ -strains on the basis of a comparative analysis of 16S rRNA gene sequences showed that sym+ -strains belong to five families of nodule bacteria: Mesorhizobium, Bradyrhizobium, Sinorhizobium, Rhizobium, and Phyllobacterium. A study the phylogeny of the sym-genes showed that the nodule bacteria of leguminous plants of the Southern Urals at the genus level are mainly characterized by a parallel evolution of symbiotic genes and the 16S rRNA gene. Thus, cases of horizontal transfer of sym genes, which sometimes leads to the formation of certain types of atypical rhizobial strains ofleguminous plants, are detected in nodule bacteria populations. PMID:27055295

  5. Rhizobial characterization in revegetated areas after bauxite mining.

    Science.gov (United States)

    Borges, Wardsson Lustrino; Prin, Yves; Ducousso, Marc; Le Roux, Christine; de Faria, Sergio Miana

    2016-01-01

    Little is known regarding how the increased diversity of nitrogen-fixing bacteria contributes to the productivity and diversity of plants in complex communities. However, some authors have shown that the presence of a diverse group of nodulating bacteria is required for different plant species to coexist. A better understanding of the plant symbiotic organism diversity role in natural ecosystems can be extremely useful to define recovery strategies of environments that were degraded by human activities. This study used ARDRA, BOX-PCR fingerprinting and sequencing of the 16S rDNA gene to assess the diversity of root nodule nitrogen-fixing bacteria in former bauxite mining areas that were replanted in 1981, 1985, 1993, 1998, 2004 and 2006 and in a native forest. Among the 12 isolates for which the 16S rDNA gene was partially sequenced, eight, three and one isolate(s) presented similarity with sequences of the genera Bradyrhizobium, Rhizobium and Mesorhizobium, respectively. The richness, Shannon and evenness indices were the highest in the area that was replanted the earliest (1981) and the lowest in the area that was replanted most recently (2006). PMID:26991294

  6. Habitat use of juvenile pallid sturgeon and shovelnose sturgeon with implications for water-level management in a downstream reservoir

    Science.gov (United States)

    Gerrity, P.C.; Guy, C.S.; Gardner, W.M.

    2008-01-01

    Natural recruitment of pallid sturgeon Scaphirhynchus albus has not been observed in the Missouri River above Fort Peck Reservoir, Montana, for at least 20 years. To augment the population, age-1 hatchery-reared juvenile pallid sturgeon were released in 1998. The objective of this study was to evaluate the habitat use of these fish and compare it with that of indigenous shovelnose sturgeon S. platorynchus. Twenty-nine juvenile pallid sturgeon and 21 indigenous shovelnose sturgeon were implanted with radio transmitters in 2003 and 2004. The two species showed no differences in habitat use in terms of mean depth, cross-sectional relative depth, longitudinal relative depth, column velocity, bottom velocity, and channel width. However, there were seasonal differences within both species for cross-sectional relative depth, column velocity, and channel width. Both shovelnose sturgeon and juvenile pallid sturgeon were primarily associated with silt and sand substrate. However, shovelnose sturgeon were associated with gravel and cobble substrate more than juvenile pallid sturgeon. Shovelnose sturgeon and juvenile pallid sturgeon both selected reaches without islands and avoided reaches with islands; the two species also selected main-channel habitat and avoided secondary channels. Mean home range was similar between juvenile pallid sturgeon (15 km; 90% confidence interval, ??5.0 km) and shovelnose sturgeon (16.5 km; ??4.7 km). Spatial distribution differed between the two species, with shovelnose sturgeon using upstream areas more often than juvenile pallid sturgeon. Twenty-eight percent of juvenile pallid sturgeon frequented 60 km of lotie habitat that would be inundated by Fort Peck Reservoir at maximum pool. Stocking juvenile pallid sturgeon can successfully augment the wild pallid sturgeon population in the Missouri River above Fort Peck Reservoir, which is crucial to the long-term recovery of the species. However, water-level management in downstream reservoirs such

  7. INVESTIGATING BROADBAND VARIABILITY OF THE TeV BLAZAR 1ES 1959+650

    Energy Technology Data Exchange (ETDEWEB)

    Aliu, E. [Department of Physics and Astronomy, Barnard College, Columbia University, NY 10027 (United States); Archambault, S. [Physics Department, McGill University, Montreal, QC H3A 2T8 (Canada); Arlen, T.; Aune, T. [Department of Physics and Astronomy, University of California, Los Angeles, CA 90095 (United States); Barnacka, A. [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Beilicke, M.; Buckley, J. H.; Bugaev, V. [Department of Physics, Washington University, St. Louis, MO 63130 (United States); Benbow, W.; Cerruti, M. [Fred Lawrence Whipple Observatory, Harvard-Smithsonian Center for Astrophysics, Amado, AZ 85645 (United States); Berger, K. [Department of Physics and Astronomy and the Bartol Research Institute, University of Delaware, Newark, DE 19716 (United States); Bird, R.; Collins-Hughes, E. [School of Physics, University College Dublin, Belfield, Dublin 4 (Ireland); Bouvier, A. [Santa Cruz Institute for Particle Physics and Department of Physics, University of California, Santa Cruz, CA 95064 (United States); Chen, X. [Institute of Physics and Astronomy, University of Potsdam, D-14476 Potsdam-Golm (Germany); Ciupik, L. [Astronomy Department, Adler Planetarium and Astronomy Museum, Chicago, IL 60605 (United States); Connolly, M. P. [School of Physics, National University of Ireland Galway, University Road, Galway (Ireland); Cui, W. [Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907 (United States); Dumm, J. [School of Physics and Astronomy, University of Minnesota, Minneapolis, MN 55455 (United States); Eisch, J. D., E-mail: amy.furniss@gmail.com, E-mail: Markus.Bottcher@nwu.ac.za [Department of Physics and Astronomy, Iowa State University, Ames, IA 50011 (United States); Collaboration: VERITAS Collaboration; and others

    2014-12-20

    We summarize broadband observations of the TeV-emitting blazar 1ES 1959+650, including optical R-band observations by the robotic telescopes Super-LOTIS and iTelescope, UV observations by Swift Ultraviolet and Optical Telescope, X-ray observations by the Swift X-ray Telescope, high-energy gamma-ray observations with the Fermi Large Area Telescope, and very-high-energy (VHE) gamma-ray observations by VERITAS above 315 GeV, all taken between 2012 April 17 and 2012 June 1 (MJD 56034 and 56079). The contemporaneous variability of the broadband spectral energy distribution is explored in the context of a simple synchrotron self Compton (SSC) model. In the SSC emission scenario, we find that the parameters required to represent the high state are significantly different than those in the low state. Motivated by possible evidence of gas in the vicinity of the blazar, we also investigate a reflected emission model to describe the observed variability pattern. This model assumes that the non-thermal emission from the jet is reflected by a nearby cloud of gas, allowing the reflected emission to re-enter the blob and produce an elevated gamma-ray state with no simultaneous elevated synchrotron flux. The model applied here, although not required to explain the observed variability pattern, represents one possible scenario which can describe the observations. As applied to an elevated VHE state of 66% of the Crab Nebula flux, observed on a single night during the observation period, the reflected emission scenario does not support a purely leptonic non-thermal emission mechanism. The reflected emission model does, however, predict a reflected photon field with sufficient energy to enable elevated gamma-ray emission via pion production with protons of energies between 10 and 100 TeV.

  8. Caracterização de rizóbios isolados de Jacatupé cultivado em solo salino no Estado de Pernanbuco, Brasil Characterization of isolated rhizobia from Pachyrhyzus erosus L. cultivated in saline soil of the State of Pernambuco, Brazil

    Directory of Open Access Journals (Sweden)

    Ana Dolores Santiago de Freitas

    2007-01-01

    Full Text Available Pesquisas sobre a biodiversidade microbiológica de solos salinos envolvem a busca por genótipos tolerantes a esse tipo de estresse ambiental. Dados genotípicos correlacionados às características morfológicas, fisiológicas e bioquímicas de bactérias fornecem informações importantes para sua identificação e agrupamento. Este trabalho objetivou caracterizar rizóbios provenientes de solos salinos, do Agreste e Sertão de Pernambuco, utilizando jacatupé (Pachyrhizus erosus L. Urban como planta-isca. Os testes foram efetuados em meio YMA e as características culturais observadas em 24 isolados foram as seguintes: mudança de pH, tempo de crescimento, transparência, forma, borda, produção de exopolissacarídeo das colônias e resistência à salinidade. Os testes moleculares utilizando análise por PCR (reação em cadeia da polimerase por meio de seqüências repetitivas de DNA amplificadas com o primer BOX envolveram 13 isolados. Os resultados revelaram alta diversidade fenotípica e genotípica entre os isolados nativos. As características culturais e genéticas desses isolados foram comparados com 19 estirpes de referência. Os isolados NFB746 e NFB747 tiveram alta semelhança entre si e também com as estirpes Rhizobium sp. NGR234 (BR2406 e Mesorhizobium ciceri USDA3383 (BR521. O isolado NFB742, possivelmente, era da mesma espécie de M. ciceri (BR521. Com relação ao isolado NFB741, a semelhança com as bactérias Rhizobium tropici IIA CFN299T (BR10016 e Sinorhizobium terangue USDA4894 (BR527 foi de 87%. Os demais isolados, praticamente, formaram grupos independentes quando comparados com as estirpes de referência. Os resultados foram de grande relevância para diagnosticar novas espécies de rizóbios nativos altamente tolerantes a estresses ambientais.Investigation on microbiological biodiversity in the saline soils involves searching for tolerant genotypes to this type of emvironmental stress. Genotypic data associated to

  9. Effect of Trichoderma harzianum T4 on Bacterial Community in Watermelon (Citrullus lanatus) Rhizosphere Soil%生防菌哈茨木霉Trichoderma harzianum T4对西瓜根围土壤细菌群落的影响

    Institute of Scientific and Technical Information of China (English)

    夏飞; 张于; 旭热; 王伟

    2013-01-01

      采用平板培养、末端限制性片段长度多态性(terminal restriction fragment length polymorphism, T-RFLP)以及变性梯度凝胶电泳(denatured gradient gel electrophoresis, DGGE)的方法相结合探讨生防菌哈茨木霉 Trichoderma harzianum T4对大棚西瓜根围土壤细菌群落及氨氧化细菌群落的影响,为其在田间应用的生态安全性的评估提供支撑。末端限制性片段长度多态性以及变性梯度凝胶电泳的结果均表明哈茨木霉 T4施入田间约四周内对根围土壤细菌群落产生明显的影响,随后这种扰动现象逐渐减小。对 DGGE中受影响条带的测序结果表明,生防菌 T4促进了假单胞菌 Pseudomonas,芽孢杆菌 Bacillus,苍白杆菌Ochrobactrum 以及中慢生根瘤菌 Mesorhizobium 等细菌类群的生长,对短杆菌 Brevibacterium,克雷白氏肺炎杆菌 Klebsiella pneumoniae,根瘤菌 Rhizobium sp 等表现出抑制作用。生防菌 T4对根围土壤中氨氧化细菌群落并没有产生明显的影响。可见,生防菌木霉 T4引入初期对根围土壤中细菌群落产生明显的扰动,但这种干扰是短暂的,并没有对根围土壤细菌群落形成持续的影响。%The effects of biocontrol strain Trichoderma harzianum T4 on bacterial and ammonia-oxidizing bacteria (AOB) communities in watermelon (Citrullus lanatus) rhizosphere soil were studied using plate colony calculation, T-RFLP and DGGE method, in order to provide a theoretical basis and technique for assessing the microbial ecology risk of biocontrol agents application. Both T-RFLP and DGGE method demonstrated that T. harzianum T4 had short-term influence on rhizosphere soil bacterial communities which lasted about four weeks. Biocontrol strain T. harzianum T4 increased population of some bacteria, such as Pseudomonas, Bacillus, Ochrobactrum and Mesorhizobium. Meanwhile population of other bacteria such as Brevibacterium and Klebsiella pneumoniae were

  10. Identification of microbial populations assimilating nitrogen from RDX in munitions contaminated military training range soils by high sensitivity stable isotope probing.

    Science.gov (United States)

    Andeer, Peter; Stahl, David A; Lillis, Lorraine; Strand, Stuart E

    2013-09-17

    The leaching of RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine) from particulates deposited in live-fire military training range soils contributes to significant pollution of groundwater. In situ microbial degradation has been proposed as a viable method for onsite containment of RDX. However, there is only a single report of RDX degradation in training range soils and the soil microbial communities involved in RDX degradation were not identified. Here we demonstrate aerobic RDX degradation in soils taken from a target area of an Eglin Air Force Base bombing range, C52N Cat's Eye, (Eglin, Florida U.S.A.). RDX-degradation activity was spatially heterogeneous (found in less than 30% of initial target area field samples) and dependent upon the addition of exogenous carbon sources to the soils. Therefore, biostimulation (with exogenous carbon sources) and bioaugmentation may be necessary to sustain timely and effective in situ microbial biodegradation of RDX. High sensitivity stable isotope probing analysis of extracted soils incubated with fully labeled (15)N-RDX revealed several organisms with (15)N-labeled DNA during RDX-degradation, including xplA-bearing organisms. Rhodococcus was the most prominent genus in the RDX-degrading soil slurries and was completely labeled with (15)N-nitrogen from the RDX. Rhodococcus and Williamsia species isolated from these soils were capable of using RDX as a sole nitrogen source and possessed the genes xplB and xplA associated with RDX-degradation, indicating these genes may be suitable genetic biomarkers for assessing RDX degradation potential in soils. Other highly labeled species were primarily Proteobacteria, including: Mesorhizobium sp., Variovorax sp., and Rhizobium sp. PMID:23909596

  11. Actinorhizal Alder Phytostabilization Alters Microbial Community Dynamics in Gold Mine Waste Rock from Northern Quebec: A Greenhouse Study.

    Science.gov (United States)

    Callender, Katrina L; Roy, Sébastien; Khasa, Damase P; Whyte, Lyle G; Greer, Charles W

    2016-01-01

    Phytotechnologies are rapidly replacing conventional ex-situ remediation techniques as they have the added benefit of restoring aesthetic value, important in the reclamation of mine sites. Alders are pioneer species that can tolerate and proliferate in nutrient-poor, contaminated environments, largely due to symbiotic root associations with the N2-fixing bacteria, Frankia and ectomycorrhizal (ECM) fungi. In this study, we investigated the growth of two Frankia-inoculated (actinorhizal) alder species, A. crispa and A. glutinosa, in gold mine waste rock from northern Quebec. Alder species had similar survival rates and positively impacted soil quality and physico-chemical properties in similar ways, restoring soil pH to neutrality and reducing extractable metals up to two-fold, while not hyperaccumulating them into above-ground plant biomass. A. glutinosa outperformed A. crispa in terms of growth, as estimated by the seedling volume index (SVI), and root length. Pyrosequencing of the bacterial 16S rRNA gene for bacteria and the ribosomal internal transcribed spacer (ITS) region for fungi provided a comprehensive, direct characterization of microbial communities in gold mine waste rock and fine tailings. Plant- and treatment-specific shifts in soil microbial community compositions were observed in planted mine residues. Shannon diversity and the abundance of microbes involved in key ecosystem processes such as contaminant degradation (Sphingomonas, Sphingobium and Pseudomonas), metal sequestration (Brevundimonas and Caulobacter) and N2-fixation (Azotobacter, Mesorhizobium, Rhizobium and Pseudomonas) increased over time, i.e., as plants established in mine waste rock. Acetate mineralization and most probable number (MPN) assays showed that revegetation positively stimulated both bulk and rhizosphere communities, increasing microbial density (biomass increase of 2 orders of magnitude) and mineralization (five-fold). Genomic techniques proved useful in investigating

  12. Dissecting the Root Nodule Transcriptome of Chickpea (Cicer arietinum L.)

    Science.gov (United States)

    Kant, Chandra; Pradhan, Seema; Bhatia, Sabhyata

    2016-01-01

    A hallmark trait of chickpea (Cicer arietinum L.), like other legumes, is the capability to convert atmospheric nitrogen (N2) into ammonia (NH3) in symbiotic association with Mesorhizobium ciceri. However, the complexity of molecular networks associated with the dynamics of nodule development in chickpea need to be analyzed in depth. Hence, in order to gain insights into the chickpea nodule development, the transcriptomes of nodules at early, middle and late stages of development were sequenced using the Roche 454 platform. This generated 490.84 Mb sequence data comprising 1,360,251 reads which were assembled into 83,405 unigenes. Transcripts were annotated using Gene Ontology (GO), Cluster of Orthologous Groups (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) metabolic pathways analysis. Differential expression analysis revealed that a total of 3760 transcripts were differentially expressed in at least one of three stages, whereas 935, 117 and 2707 transcripts were found to be differentially expressed in the early, middle and late stages of nodule development respectively. MapMan analysis revealed enrichment of metabolic pathways such as transport, protein synthesis, signaling and carbohydrate metabolism during root nodulation. Transcription factors were predicted and analyzed for their differential expression during nodule development. Putative nodule specific transcripts were identified and enriched for GO categories using BiNGO which revealed many categories to be enriched during nodule development, including transcription regulators and transporters. Further, the assembled transcriptome was also used to mine for genic SSR markers. In conclusion, this study will help in enriching the transcriptomic resources implicated in understanding of root nodulation events in chickpea. PMID:27348121

  13. Dissecting the Root Nodule Transcriptome of Chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Kant, Chandra; Pradhan, Seema; Bhatia, Sabhyata

    2016-01-01

    A hallmark trait of chickpea (Cicer arietinum L.), like other legumes, is the capability to convert atmospheric nitrogen (N2) into ammonia (NH3) in symbiotic association with Mesorhizobium ciceri. However, the complexity of molecular networks associated with the dynamics of nodule development in chickpea need to be analyzed in depth. Hence, in order to gain insights into the chickpea nodule development, the transcriptomes of nodules at early, middle and late stages of development were sequenced using the Roche 454 platform. This generated 490.84 Mb sequence data comprising 1,360,251 reads which were assembled into 83,405 unigenes. Transcripts were annotated using Gene Ontology (GO), Cluster of Orthologous Groups (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) metabolic pathways analysis. Differential expression analysis revealed that a total of 3760 transcripts were differentially expressed in at least one of three stages, whereas 935, 117 and 2707 transcripts were found to be differentially expressed in the early, middle and late stages of nodule development respectively. MapMan analysis revealed enrichment of metabolic pathways such as transport, protein synthesis, signaling and carbohydrate metabolism during root nodulation. Transcription factors were predicted and analyzed for their differential expression during nodule development. Putative nodule specific transcripts were identified and enriched for GO categories using BiNGO which revealed many categories to be enriched during nodule development, including transcription regulators and transporters. Further, the assembled transcriptome was also used to mine for genic SSR markers. In conclusion, this study will help in enriching the transcriptomic resources implicated in understanding of root nodulation events in chickpea. PMID:27348121

  14. Identification of two novel nodule-specific genes from Astragalus sinicus L. by suppressive subtractive hybridization

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    To identify the genes involved in nodule formation and to increase usable molecular probes, a cDNA library of Astragalus sinicus genes specifically expressed in infected roots by Mesorhizobium huakuii 7653R is generated using a PCR-based suppressive subtractive hybridization (SSH) technique with two mRNA populations of infected and uninfected control roots. Two nodule-specific genes, AsIIC259 and AsG2511, are identified from infected roots of A. sinicus. The amino acid sequences deduced from the open reading frames (ORFs) reveal that AsIIC259 and AsG2511 encodes a polypeptide with 134 and 58 amino acids, respectively. A signal peptide sequence is predicted with high probability at the N-termini of the AsIIC259 and AsG2511. The motif searches show that the deduced polypeptide of AsIIC259 contains two N-glycosylation sites, a cAMP- and cGMP-dependent protein kinase phosphorylation site and a casein kinase II phosphorylation site. BLASTP searches reveal that AsIIC259 putative protein displays a low degree of similarity to a unique nodulin from Lupinus luteus nodules. No significant identity is displayed over the predicted polypeptides of AsG2511 with any published sequences. Virtual Northern blot and semi-quantitative reverse transcription-polymerase chain reaction (RT-PCR) analyses indicate that the two genes are expressed exclusively in inoculated roots and that their expression is 2-4 d later than that of the leghaemoglobin (Lb) gene during nodule development.

  15. Characterization of rhizobia from legumes of agronomic interest grown in semi-arid areas of Central Spain relates genetic differences to soil properties.

    Science.gov (United States)

    Ruiz-Díez, Beatriz; Fajardo, Susana; Felipe, María del Rosario de; Fernández-Pascual, Mercedes

    2012-02-01

    A study of symbiotic bacteria from traditional agricultural legumes from Central Spain was performed to create a collection of rhizobia from soils differing in physicochemical, analytical and/or agroecological properties which could be well-adapted to the environmental conditions of this region, and be used for sustainable agricultural practices. Thirty-six isolates were obtained from root-nodules of fifteen legume species (including Cicer arietinum, Lathyrus sativus, Lens culinaris, Lupinus spp., Medicago sativa, Phaseolus vulgaris, Pisum sativum, and Vicia spp.) from three agriculture areas with soils of different pHs and from a forest area with undisturbed soils. Phenotypical characterization revealed uniformity across the thirty-six isolates, with important exceptions in terms of environmental tolerance (three isolates survived at high temperatures, three at high salinity and three at acid pH). The molecular analysis of 16S rRNA gene showed a close relationship of twenty-nine isolates to Rhizobium leguminosarum, one to Rhizobium gallicum, one to Mesorhizobium ciceri, two to Sinorhizobium (Ensifer) meliloti and three to Bradyrhizobium canariense. The sequence analysis of a symbiosis-specific gene, nod C, showed a correlation with the plant host and grouped twenty-six isolates with Rhizobium leguminosarum bv. viciae, establishing the diversity in relation to legume-host. The 16S-23S rRNA intergenic spacer (IGS) region allowed for intraspecific differentiation, so that strains with equal 16S rRNA were grouped by means of their soil origin. These results indicated that phenotypical and genetically related strains may be widely distributed in this region and that soil abiotic characteristics could have a substantial bearing on the selection of the strains living in each environment. PMID:21953333

  16. Actinorhizal Alder Phytostabilization Alters Microbial Community Dynamics in Gold Mine Waste Rock from Northern Quebec: A Greenhouse Study.

    Directory of Open Access Journals (Sweden)

    Katrina L Callender

    Full Text Available Phytotechnologies are rapidly replacing conventional ex-situ remediation techniques as they have the added benefit of restoring aesthetic value, important in the reclamation of mine sites. Alders are pioneer species that can tolerate and proliferate in nutrient-poor, contaminated environments, largely due to symbiotic root associations with the N2-fixing bacteria, Frankia and ectomycorrhizal (ECM fungi. In this study, we investigated the growth of two Frankia-inoculated (actinorhizal alder species, A. crispa and A. glutinosa, in gold mine waste rock from northern Quebec. Alder species had similar survival rates and positively impacted soil quality and physico-chemical properties in similar ways, restoring soil pH to neutrality and reducing extractable metals up to two-fold, while not hyperaccumulating them into above-ground plant biomass. A. glutinosa outperformed A. crispa in terms of growth, as estimated by the seedling volume index (SVI, and root length. Pyrosequencing of the bacterial 16S rRNA gene for bacteria and the ribosomal internal transcribed spacer (ITS region for fungi provided a comprehensive, direct characterization of microbial communities in gold mine waste rock and fine tailings. Plant- and treatment-specific shifts in soil microbial community compositions were observed in planted mine residues. Shannon diversity and the abundance of microbes involved in key ecosystem processes such as contaminant degradation (Sphingomonas, Sphingobium and Pseudomonas, metal sequestration (Brevundimonas and Caulobacter and N2-fixation (Azotobacter, Mesorhizobium, Rhizobium and Pseudomonas increased over time, i.e., as plants established in mine waste rock. Acetate mineralization and most probable number (MPN assays showed that revegetation positively stimulated both bulk and rhizosphere communities, increasing microbial density (biomass increase of 2 orders of magnitude and mineralization (five-fold. Genomic techniques proved useful in

  17. Use of Phosphate Solubilizing Bacteria to Leach Rare Earth Elements from Monazite-Bearing Ore

    Directory of Open Access Journals (Sweden)

    Doyun Shin

    2015-04-01

    Full Text Available In the present study, the feasibility to use phosphate solubilizing bacteria (PSB to develop a biological leaching process of rare earth elements (REE from monazite-bearing ore was determined. To predict the REE leaching capacity of bacteria, the phosphate solubilizing abilities of 10 species of PSB were determined by halo zone formation on Reyes minimal agar media supplemented with bromo cresol green together with a phosphate solubilization test in Reyes minimal liquid media as the screening studies. Calcium phosphate was used as a model mineral phosphate. Among the test PSB strains, Pseudomonas fluorescens, P. putida, P. rhizosphaerae, Mesorhizobium ciceri, Bacillus megaterium, and Acetobacter aceti formed halo zones, with the zone of A. aceti being the widest. In the phosphate solubilization test in liquid media, Azospirillum lipoferum, P. rhizosphaerae, B. megaterium, and A. aceti caused the leaching of 6.4%, 6.9%, 7.5%, and 32.5% of calcium, respectively. When PSB were used to leach REE from monazite-bearing ore, ~5.7 mg/L of cerium (0.13% of leaching efficiency and ~2.8 mg/L of lanthanum (0.11% were leached by A. aceti, and Azospirillum brasilense, A. lipoferum, P. rhizosphaerae and M. ciceri leached 0.5–1 mg/L of both cerium and lanthanum (0.005%–0.01%, as measured by concentrations in the leaching liquor. These results indicate that determination of halo zone formation was found as a useful method to select high-capacity bacteria in REE leaching. However, as the leaching efficiency determined in our experiments was low, even in the presence of A. aceti, further studies are now underway to enhance leaching efficiency by selecting other microorganisms based on halo zone formation.

  18. Bioremediation of cadmium contaminated soil using symbiosis between leguminous plant and recombinant rhizobia with the MTL4 and the PCS genes.

    Science.gov (United States)

    Ike, Akiko; Sriprang, Rutchadaporn; Ono, Hisayo; Murooka, Yoshikatsu; Yamashita, Mitsuo

    2007-01-01

    Cadmium contamination in rice grains is one of the important issues in Asian countries. We have developed a novel bio-remediation system based on the symbiosis between leguminous plant and genetically engineered rhizobia. We designed two types of recombinant rhizobia, carrying two genes, synthetic tetrameric metallothionein (MTL4) and cDNA encoding phytochelatin synthase from Arabidopsis thaliana (AtPCS). The MTL4 and AtPCS genes were transferred to Mesorhizobium huakuii subsp. rengei B3, which can infect and form nodules on Chinese milk vetch, Astragalus sinicus. The two genes were fused to the nolB or nifH promoter, which generated nodule specific expression of these genes in strain B3. The two recombinant strains, B3(pMPnolBMTL4nifHPCS) and B3::nifHMTL4(pMPnifHPCS), showed 25 and 12-fold increase in Cd concentration, in the free-living cells, respectively. When these recombinant strains established the symbiotic relationship with A. sinicus, the symbionts increased Cd accumulation in nodules by two-fold in hydroponic culture. The expression of the both MTL4 and AtPCS genes showed additive effect on cadmium accumulation in nodules. We also applied these recombinant bacteria to rice paddy soil polluted with Cd (1mgkg(-1) dry weight soil). The accumulation of Cd increased not only in nodules but also in the roots of A. sinicus infected by the recombinant rhizobia. The accumulation of Cd in the plant roots infected by B3(pMPnolBMTL4nifHPCS) achieved three-fold than that by the wild-type B3. After two months of cultivation of the symbiont, a maximum of 9% of Cd in paddy soil was removed. Thus, the symbiosis will be useful in phytoremediation for heavy metals. PMID:16950497

  19. High diversity of nitrogen-fixing bacteria in upper reaches of Heihe River, Northwestern China

    Directory of Open Access Journals (Sweden)

    X. S. Tai

    2013-03-01

    Full Text Available Vegetation plays a key role to water conservation in southern Qilian Mountains (Northwestern China, the upper reaches of Heihe River. Nitrogen-fixing bacteria are crucial for vegetation protection because they can supply plants with nitrogen source. Nevertheless, little is known about nitrogen-fixing bacteria in this region. In present study, nifH gene clone libraries were established for detecting the difference of nitrogen-fixing bacterial communities between Potentilla parvifolia shrub and Carex alrofusca meadow in the southern Qilian Mountains. All the identified nitrogen-fixing bacterial clones belonged to Proteobacteria. At the genus level, the Azospirillum sp. was only detected in shrub soil while Thiocapsa sp., Derxiasp., Ectothiorhodospira sp., Mesorhizobium sp., Klebsiella sp., Ensifer sp., Methylocella sp. and Peseudomonas sp. were just detected in meadow soil. Shannon–Wiener index of nifH gene ranged from 1.5 to 2.8 and was higher in meadow soil than shrub soil. Contrarily, the nifH gene copies and CFUs of cultured nitrogen-fixing bacteria ranged from 0.4 × 107 to 6.9 × 107 copies g−1 soil and 0.97 × 106 to 12.78 × 106 g−1 soil, respectively. Furthermore, both of them were lower in meadow soil than shrub soil. Statistical analysis revealed that diversity and copies of nifH gene mostly correlated with aboveground biomass in shrub soil. In meadow soil, nifH gene diversity was principally affected by altitude while copies did by soil available K.

  20. High diversity of nitrogen-fixing bacteria in upper reaches of Heihe River, Northwestern China

    Science.gov (United States)

    Tai, X. S.; Mao, W. L.; Liu, G. X.; Chen, T.; Zhang, W.; Wu, X. K.; Long, H. Z.; Zhang, B. G.

    2013-03-01

    Vegetation plays a key role to water conservation in southern Qilian Mountains (Northwestern China), the upper reaches of Heihe River. Nitrogen-fixing bacteria are crucial for vegetation protection because they can supply plants with nitrogen source. Nevertheless, little is known about nitrogen-fixing bacteria in this region. In present study, nifH gene clone libraries were established for detecting the difference of nitrogen-fixing bacterial communities between Potentilla parvifolia shrub and Carex alrofusca meadow in the southern Qilian Mountains. All the identified nitrogen-fixing bacterial clones belonged to Proteobacteria. At the genus level, the Azospirillum sp. was only detected in shrub soil while Thiocapsa sp., Derxiasp., Ectothiorhodospira sp., Mesorhizobium sp., Klebsiella sp., Ensifer sp., Methylocella sp. and Peseudomonas sp. were just detected in meadow soil. Shannon-Wiener index of nifH gene ranged from 1.5 to 2.8 and was higher in meadow soil than shrub soil. Contrarily, the nifH gene copies and CFUs of cultured nitrogen-fixing bacteria ranged from 0.4 × 107 to 6.9 × 107 copies g-1 soil and 0.97 × 106 to 12.78 × 106 g-1 soil, respectively. Furthermore, both of them were lower in meadow soil than shrub soil. Statistical analysis revealed that diversity and copies of nifH gene mostly correlated with aboveground biomass in shrub soil. In meadow soil, nifH gene diversity was principally affected by altitude while copies did by soil available K.

  1. 25th Space Simulation Conference. Environmental Testing: The Earth-Space Connection

    Science.gov (United States)

    Packard, Edward

    2008-01-01

    Topics covered include: Methods of Helium Injection and Removal for Heat Transfer Augmentation; The ESA Large Space Simulator Mechanical Ground Support Equipment for Spacecraft Testing; Temperature Stability and Control Requirements for Thermal Vacuum/Thermal Balance Testing of the Aquarius Radiometer; The Liquid Nitrogen System for Chamber A: A Change from Original Forced Flow Design to a Natural Flow (Thermo Siphon) System; Return to Mercury: A Comparison of Solar Simulation and Flight Data for the MESSENGER Spacecraft; Floating Pressure Conversion and Equipment Upgrades of Two 3.5kw, 20k, Helium Refrigerators; Affect of Air Leakage into a Thermal-Vacuum Chamber on Helium Refrigeration Heat Load; Special ISO Class 6 Cleanroom for the Lunar Reconnaissance Orbiter (LRO) Project; A State-of-the-Art Contamination Effects Research and Test Facility Martian Dust Simulator; Cleanroom Design Practices and Their Influence on Particle Counts; Extra Terrestrial Environmental Chamber Design; Contamination Sources Effects Analysis (CSEA) - A Tool to Balance Cost/Schedule While Managing Facility Availability; SES and Acoustics at GSFC; HST Super Lightweight Interchangeable Carrier (SLIC) Static Test; Virtual Shaker Testing: Simulation Technology Improves Vibration Test Performance; Estimating Shock Spectra: Extensions beyond GEVS; Structural Dynamic Analysis of a Spacecraft Multi-DOF Shaker Table; Direct Field Acoustic Testing; Manufacture of Cryoshroud Surfaces for Space Simulation Chambers; The New LOTIS Test Facility; Thermal Vacuum Control Systems Options for Test Facilities; Extremely High Vacuum Chamber for Low Outgassing Processing at NASA Goddard; Precision Cleaning - Path to Premier; The New Anechoic Shielded Chambers Designed for Space and Commercial Applications at LIT; Extraction of Thermal Performance Values from Samples in the Lunar Dust Adhesion Bell Jar; Thermal (Silicon Diode) Data Acquisition System; Aquarius's Instrument Science Data System (ISDS) Automated

  2. Tuning stochastic matrix models with hydrologic data to predict the population dynamics of a riverine fish

    Science.gov (United States)

    Sakaris, P.C.; Irwin, E.R.

    2010-01-01

    We developed stochastic matrix models to evaluate the effects of hydrologic alteration and variable mortality on the population dynamics of a lotie fish in a regulated river system. Models were applied to a representative lotic fish species, the flathead catfish (Pylodictis olivaris), for which two populations were examined: a native population from a regulated reach of the Coosa River (Alabama, USA) and an introduced population from an unregulated section of the Ocmulgee River (Georgia, USA). Size-classified matrix models were constructed for both populations, and residuals from catch-curve regressions were used as indices of year class strength (i.e., recruitment). A multiple regression model indicated that recruitment of flathead catfish in the Coosa River was positively related to the frequency of spring pulses between 283 and 566 m3/s. For the Ocmulgee River population, multiple regression models indicated that year class strength was negatively related to mean March discharge and positively related to June low flow. When the Coosa population was modeled to experience five consecutive years of favorable hydrologic conditions during a 50-year projection period, it exhibited a substantial spike in size and increased at an overall 0.2% annual rate. When modeled to experience five years of unfavorable hydrologic conditions, the Coosa population initially exhibited a decrease in size but later stabilized and increased at a 0.4% annual rate following the decline. When the Ocmulgee River population was modeled to experience five years of favorable conditions, it exhibited a substantial spike in size and increased at an overall 0.4% annual rate. After the Ocmulgee population experienced five years of unfavorable conditions, a sharp decline in population size was predicted. However, the population quickly recovered, with population size increasing at a 0.3% annual rate following the decline. In general, stochastic population growth in the Ocmulgee River was more

  3. Microvirga lupini sp. nov., Microvirga lotononidis sp. nov. and Microvirga zambiensis sp. nov. are alphaproteobacterial root-nodule bacteria that specifically nodulate and fix nitrogen with geographically and taxonomically separate legume hosts.

    Science.gov (United States)

    Ardley, Julie K; Parker, Matthew A; De Meyer, Sofie E; Trengove, Robert D; O'Hara, Graham W; Reeve, Wayne G; Yates, Ron J; Dilworth, Michael J; Willems, Anne; Howieson, John G

    2012-11-01

    Strains of Gram-negative, rod-shaped, non-spore-forming bacteria were isolated from nitrogen-fixing nodules of the native legumes Listia angolensis (from Zambia) and Lupinus texensis (from Texas, USA). Phylogenetic analysis of the 16S rRNA gene showed that the novel strains belong to the genus Microvirga, with ≥ 96.1% sequence similarity with type strains of this genus. The closest relative of the representative strains Lut6(T) and WSM3557(T) was Microvirga flocculans TFB(T), with 97.6-98.0% similarity, while WSM3693(T) was most closely related to Microvirga aerilata 5420S-16(T), with 98.8% similarity. Analysis of the concatenated sequences of four housekeeping gene loci (dnaK, gyrB, recA and rpoB) and cellular fatty acid profiles confirmed the placement of Lut6(T), WSM3557(T) and WSM3693(T) within the genus Microvirga. DNA-DNA relatedness values, and physiological and biochemical tests allowed genotypic and phenotypic differentiation of Lut6(T), WSM3557(T) and WSM3693(T) from each other and from other Microvirga species with validly published names. The nodA sequence of Lut6(T) was placed in a clade that contained strains of Rhizobium, Mesorhizobium and Sinorhizobium, while the 100% identical nodA sequences of WSM3557(T) and WSM3693(T) clustered with Bradyrhizobium, Burkholderia and Methylobacterium strains. Concatenated sequences for nifD and nifH show that the sequences of Lut6(T), WSM3557(T) and WSM3693(T) were most closely related to that of Rhizobium etli CFN42(T) nifDH. On the basis of genotypic, phenotypic and DNA relatedness data, three novel species of Microvirga are proposed: Microvirga lupini sp. nov. (type strain Lut6(T) =LMG 26460(T) =HAMBI 3236(T)), Microvirga lotononidis sp. nov. (type strain WSM3557(T) =LMG 26455(T) =HAMBI 3237(T)) and Microvirga zambiensis sp. nov. (type strain WSM3693(T) =LMG 26454(T) =HAMBI 3238(T)). PMID:22199210

  4. Developing Planetary Protection Technology: Microbial Diversity of the Mars Orbiter "Odyssey" and the Spacecraft Assembly and Encapsulation Facility II

    Science.gov (United States)

    La Duc, M. T.; Chen, F.; Baker, A.; Koukol, R. C.; Kern, R. G.; Venkateswaran, K. J.

    2001-12-01

    Sampling the surfaces of both spacecraft and their clean-room assembly facilities is crucial in monitoring the microbial burden associated with these pseudo-sterile, oligotrophic environments. Here, we present the results of a study in which several surface samples, retrieved from both the Mars Odyssey Spacecraft and the Kennedy Space Center (KSC) Spacecraft Assembly and Encapsulation Facility II (SAEF-II), were processed and evaluated by both molecular and traditional culture-based methods for microbial diversity. The findings of this study improve our current understanding of the microbial community structure, diversity, and dispersal in a spacecraft assembly facility, as well as physically associated with co-located spacecraft. Surfaces of 25 cm2 (spacecraft) or 0.4 m2 (SAEF-II) were swabbed or wiped, respectively, and were examined for total heterotrophic aerobes and spore-formers. Samples were further subjected to nucleic acid extraction, and 16S rDNA fragments were PCR amplified with eubacterial biased universal primers and cloned. Approximately 30 isolates grown by traditional culture-based techniques were included for 16S rDNA sequencing. For the most part, the population dynamics remained consistent when compared between the spacecraft and assembly facility libraries. Predominant microbes, as indicated by molecular methods, included members of the genera Variovorax and Aquaspirillum. Members of the Mesorhizobium, Bradyrhizobium, Enterococcus, Ralstonia, and Bacillus genera were also found to span the various libraries but in less abundance. Traditional culture-based techniques validated the presence of Bacillus and Ralstonia, while illuminating a larger diversity in revealing the presence of Staphylococcus, Comamonas, Microbacterium, and Actinomycetales. The bulk of these findings make sense, since species of Ralstonia, Rhizobium, Variovorax, and Bacillus are known to frequently inhabit rhizospheric environments, like that surrounding the KSC facility, and

  5. High diversity of nitrogen-fixing bacteria in the upper reaches of the Heihe River, northwestern China

    Directory of Open Access Journals (Sweden)

    X. S. Tai

    2013-08-01

    Full Text Available Vegetation plays a key role in water conservation in the southern Qilian Mountains (northwestern China, located in the upper reaches of the Heihe River. Nitrogen-fixing bacteria are crucial for the protection of the nitrogen supply for vegetation in the region. In the present study, nifH gene clone libraries were established to determine differences between the nitrogen-fixing bacterial communities of the Potentilla parvifolia shrubland and the Carex alrofusca meadow in the southern Qilian Mountains. All of the identified nitrogen-fixing bacterial clones belonged to the Proteobacteria. At the genus level, Azospirillum was only detected in the shrubland soil, while Thiocapsa, Derxia, Ectothiorhodospira, Mesorhizobium, Klebsiella, Ensifer, Methylocella and Pseudomonas were only detected in the meadow soil. The phylogenetic tree was divided into five lineages: lineages I, II and III mainly contained nifH sequences obtained from the meadow soils, while lineage IV was mainly composed of nifH sequences obtained from the shrubland soils. The Shannon–Wiener index of the nifH genes ranged from 1.5 to 2.8 and was higher in the meadow soils than in the shrubland soils. Based on these analyses of diversity and phylogeny, the plant species were hypothesised to influence N cycling by enhancing the fitness of certain nitrogen-fixing taxa. The number of nifH gene copies and colony-forming units (CFUs of the cultured nitrogen-fixing bacteria were lower in the meadow soils than in the shrubland soils, ranging from 0.4 × 107 to 6.9 × 107 copies g−1 soil and 0.97 × 106 to 12.78 × 106 g−1 soil, respectively. Redundancy analysis (RDA revealed that the diversity and number of the nifH gene copies were primarily correlated with aboveground biomass in the shrubland soil. In the meadow soil, nifH gene diversity was most affected by altitude, while copy number was most impacted by soil-available K. These results suggest that the nitrogen-fixing bacterial

  6. The Symbiotic Performance of Chickpea Rhizobia Can Be Improved by Additional Copies of the clpB Chaperone Gene.

    Directory of Open Access Journals (Sweden)

    Ana Paço

    Full Text Available The ClpB chaperone is known to be involved in bacterial stress response. Moreover, recent studies suggest that this protein has also a role in the chickpea-rhizobia symbiosis. In order to improve both stress tolerance and symbiotic performance of a chickpea microsymbiont, the Mesorhizobium mediterraneum UPM-Ca36T strain was genetically transformed with pPHU231 containing an extra-copy of the clpB gene. To investigate if the clpB-transformed strain displays an improved stress tolerance, bacterial growth was evaluated under heat and acid stress conditions. In addition, the effect of the extra-copies of the clpB gene in the symbiotic performance was evaluated using plant growth assays (hydroponic and pot trials. The clpB-transformed strain is more tolerant to heat shock than the strain transformed with pPHU231, supporting the involvement of ClpB in rhizobia heat shock tolerance. Both plant growth assays showed that ClpB has an important role in chickpea-rhizobia symbiosis. The nodulation kinetics analysis showed a higher rate of nodule appearance with the clpB-transformed strain. This strain also induced a greater number of nodules and, more notably, its symbiotic effectiveness increased ~60% at pH5 and 83% at pH7, compared to the wild-type strain. Furthermore, a higher frequency of root hair curling was also observed in plants inoculated with the clpB-transformed strain, compared to the wild-type strain. The superior root hair curling induction, nodulation ability and symbiotic effectiveness of the clpB-transformed strain may be explained by an increased expression of symbiosis genes. Indeed, higher transcript levels of the nodulation genes nodA and nodC (~3 folds were detected in the clpB-transformed strain. The improvement of rhizobia by addition of extra-copies of the clpB gene may be a promising strategy to obtain strains with enhanced stress tolerance and symbiotic effectiveness, thus contributing to their success as crop inoculants

  7. The Symbiotic Performance of Chickpea Rhizobia Can Be Improved by Additional Copies of the clpB Chaperone Gene.

    Science.gov (United States)

    Paço, Ana; Brígido, Clarisse; Alexandre, Ana; Mateos, Pedro F; Oliveira, Solange

    2016-01-01

    The ClpB chaperone is known to be involved in bacterial stress response. Moreover, recent studies suggest that this protein has also a role in the chickpea-rhizobia symbiosis. In order to improve both stress tolerance and symbiotic performance of a chickpea microsymbiont, the Mesorhizobium mediterraneum UPM-Ca36T strain was genetically transformed with pPHU231 containing an extra-copy of the clpB gene. To investigate if the clpB-transformed strain displays an improved stress tolerance, bacterial growth was evaluated under heat and acid stress conditions. In addition, the effect of the extra-copies of the clpB gene in the symbiotic performance was evaluated using plant growth assays (hydroponic and pot trials). The clpB-transformed strain is more tolerant to heat shock than the strain transformed with pPHU231, supporting the involvement of ClpB in rhizobia heat shock tolerance. Both plant growth assays showed that ClpB has an important role in chickpea-rhizobia symbiosis. The nodulation kinetics analysis showed a higher rate of nodule appearance with the clpB-transformed strain. This strain also induced a greater number of nodules and, more notably, its symbiotic effectiveness increased ~60% at pH5 and 83% at pH7, compared to the wild-type strain. Furthermore, a higher frequency of root hair curling was also observed in plants inoculated with the clpB-transformed strain, compared to the wild-type strain. The superior root hair curling induction, nodulation ability and symbiotic effectiveness of the clpB-transformed strain may be explained by an increased expression of symbiosis genes. Indeed, higher transcript levels of the nodulation genes nodA and nodC (~3 folds) were detected in the clpB-transformed strain. The improvement of rhizobia by addition of extra-copies of the clpB gene may be a promising strategy to obtain strains with enhanced stress tolerance and symbiotic effectiveness, thus contributing to their success as crop inoculants, particularly under

  8. High diversity of nitrogen-fixing bacteria in the upper reaches of the Heihe River, northwestern China

    Science.gov (United States)

    Tai, X. S.; Mao, W. L.; Liu, G. X.; Chen, T.; Zhang, W.; Wu, X. K.; Long, H. Z.; Zhang, B. G.; Zhang, Y.

    2013-08-01

    Vegetation plays a key role in water conservation in the southern Qilian Mountains (northwestern China), located in the upper reaches of the Heihe River. Nitrogen-fixing bacteria are crucial for the protection of the nitrogen supply for vegetation in the region. In the present study, nifH gene clone libraries were established to determine differences between the nitrogen-fixing bacterial communities of the Potentilla parvifolia shrubland and the Carex alrofusca meadow in the southern Qilian Mountains. All of the identified nitrogen-fixing bacterial clones belonged to the Proteobacteria. At the genus level, Azospirillum was only detected in the shrubland soil, while Thiocapsa, Derxia, Ectothiorhodospira, Mesorhizobium, Klebsiella, Ensifer, Methylocella and Pseudomonas were only detected in the meadow soil. The phylogenetic tree was divided into five lineages: lineages I, II and III mainly contained nifH sequences obtained from the meadow soils, while lineage IV was mainly composed of nifH sequences obtained from the shrubland soils. The Shannon-Wiener index of the nifH genes ranged from 1.5 to 2.8 and was higher in the meadow soils than in the shrubland soils. Based on these analyses of diversity and phylogeny, the plant species were hypothesised to influence N cycling by enhancing the fitness of certain nitrogen-fixing taxa. The number of nifH gene copies and colony-forming units (CFUs) of the cultured nitrogen-fixing bacteria were lower in the meadow soils than in the shrubland soils, ranging from 0.4 × 107 to 6.9 × 107 copies g-1 soil and 0.97 × 106 to 12.78 × 106 g-1 soil, respectively. Redundancy analysis (RDA) revealed that the diversity and number of the nifH gene copies were primarily correlated with aboveground biomass in the shrubland soil. In the meadow soil, nifH gene diversity was most affected by altitude, while copy number was most impacted by soil-available K. These results suggest that the nitrogen-fixing bacterial communities beneath Potentilla

  9. New Curculionoidea (Coleoptera records for Canadа

    Directory of Open Access Journals (Sweden)

    Hume Douglas

    2013-06-01

    Full Text Available The following species of Curculionoidea are recorded from Canada for the first time, in ten cases also representing new records at the generic level: Ischnopterapion (Ischnopterapion loti (Kirby, 1808; Stenopterapion meliloti (Kirby, 1808 (both Brentidae; Atrichonotus taeniatulus (Berg, 1881; Barinus cribricollis (LeConte, 1876; Caulophilus dubius (Horn, 1873; Cionus scrophulariae (Linnaeus, 1758; Cryptorhynchus tristis LeConte, 1876; Cylindrocopturus furnissi Buchanan, 1940; Cylindrocopturus quercus (Say, 1832; Desmoglyptus crenatus (LeConte, 1876; Pnigodes setosus LeConte, 1876; Pseudopentarthrum parvicollis (Casey, 1892; Sibariops confinis (LeConte, 1876; Sibariops confusus (Boheman, 1836; Smicronyx griseus LeConte, 1876; Smicronyx lineolatus Casey, 1892; Euwallacea validus (Eichhoff, 1875; Hylocurus rudis (LeConte, 1876; Lymantor alaskanus Wood, 1978; Phloeotribus scabricollis (Hopkins, 1916; Scolytus oregoni Blackman, 1934; Xyleborus celsus Eichhoff, 1868; Xyleborus ferrugineus (Fabricius, 1801; Xylosandrus crassiusculus (Motschulsky, 1866 (all Curculionidae. In addition the following species were recorded for the first time from these provinces and territories: Yukon – Dendroctonus simplex LeConte, 1868; Phloetribus piceae Swaine, 1911 (both Curculionidae; Northwest Territories – Loborhynchapion cyanitinctum (Fall, 1927 (Brentidae; Nunavut – Dendroctonus simplex LeConte, 1868 (Curculionidae; Alberta – Anthonomus tectus LeConte, 1876; Promecotarsus densus Casey, 1892; Dendroctonus ponderosae Hopkins, 1902; Hylastes macer LeConte, 1868; Rhyncolus knowltoni (Thatcher, 1940; Scolytus schevyrewi Semenov Tjan-Shansky, 1902 (all Curculionidae; Saskatchewan – Phloeotribus liminaris (Harris, 1852; Rhyncolus knowltoni (Thatcher, 1940; Scolytus schevyrewi Semenov Tjan-Shansky, 1902 (all Curculionidae; Manitoba – Cosmobaris scolopacea Germar, 1819; Listronotus maculicollis (Kirby, 1837; Listronotus punctiger LeConte, 1876; Scolytus

  10. A Argentina entre as reformas econômicas neoliberais e a redefinição das negociações com o FMI (1989-2007 L'Argentine entre les réformes économiques néoliberales et la redéfinition des négociations avec le FMI (1989-2007 Argentina: between neoliberal economic reform and redefinitions of negotiations with the IMF (1989-2007

    Directory of Open Access Journals (Sweden)

    Roberta Rodrigues Marques da Silva

    2009-06-01

    ública.Cet article a pour objectif d'analyser l'influence de la crise économique sur la formation de nouvelles coalitions politique dans l'Argentine des années 2000, qui ont mené à la rupture de la politique économique adoptée par les gouvernements Menem et De la Rúa. Ces transformations ont favorisé un changement dans la stratégie du gouvernement Néstor Kirchner concernant les relations avec le Fonds Monétaire International (FMI, ce qui a engendré une position plus dure de la part du gouvernement argentin et un rejet des positions du FMI. La politique économique soutenue par les gouvernements Duhalde et Kirchner s'est appuyée sur le régime de change compétitif, à la place du régime de conversion en vigueur dans les années 1990, et comptait sur l'appui des groupes d'entrepreneurs orientés vers le marché domestique, mieux lotis en fonction de la dévalorisation du « peso ». La proposition de ces gouvernements pour la relance économique a supprimé des acteurs ayant des liens étrangers, qui participaient à des coalitions d'appui sous Menem et De la Rúa. Parmi les exclus, figuraient les créanciers ayant des papiers de la dette en moratoire depuis 2001 et les entreprises offrant des services publics qui avaient été privatisées dans les années 1990 et qui ont reçu appui du FMI. Ces raisons expliquent le fait que les négociations avec le Fonds pendant le gouvernement Kirchner ont été marquées par des impasses et par l'attitude énergique de la part des négociateurs argentins. Des transformations dans le contexte international ont également eu des impacts sur les négociations du gouvernement Kirchner avec le FMI. Avec l'élections de George W.Bush aux États-Unis, en 2000, l'appui nord-américain à la concession d'emprunts du Fonds à des pays en développement s'est affaibli. Le gouvernement républicain a encore prôné la réduction du rôle du FMI dans l'intermédiation des négocitions entre les pays endettés et les créanciers privés. Ainsi