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Sample records for adjacent mismatch base

  1. Pelvic incidence-lumbar lordosis mismatch predisposes to adjacent segment disease after lumbar spinal fusion.

    Science.gov (United States)

    Rothenfluh, Dominique A; Mueller, Daniel A; Rothenfluh, Esin; Min, Kan

    2015-06-01

    Several risk factors and causes of adjacent segment disease have been debated; however, no quantitative relationship to spino-pelvic parameters has been established so far. A retrospective case-control study was carried out to investigate spino-pelvic alignment in patients with adjacent segment disease compared to a control group. 45 patients (ASDis) were identified that underwent revision surgery for adjacent segment disease after on average 49 months (7-125), 39 patients were selected as control group (CTRL) similar in the distribution of the matching variables, such as age, gender, preoperative degenerative changes, and numbers of segments fused with a mean follow-up of 84 months (61-142) (total n = 84). Several radiographic parameters were measured on pre- and postoperative radiographs, including lumbar lordosis measured (LL), sacral slope, pelvic incidence (PI), and tilt. Significant differences between ASDis and CTRL groups on preoperative radiographs were seen for PI (60.9 ± 10.0° vs. 51.7 ± 10.4°, p = 0.001) and LL (48.1 ± 12.5° vs. 53.8 ± 10.8°, p = 0.012). Pelvic incidence was put into relation to lumbar lordosis by calculating the difference between pelvic incidence and lumbar lordosis (∆PILL = PI-LL, ASDis 12.5 ± 16.7° vs. CTRL 3.4 ± 12.1°, p = 0.001). A cutoff value of 9.8° was determined by logistic regression and ROC analysis and patients classified into a type A (∆PILL lordosis mismatch. In type A spino-pelvic alignment, 25.5 % of patients underwent revision surgery for adjacent segment disease, whereas 78.3 % of patients classified as type B alignment had revision surgery. Classification of patients into type A and B alignments yields a sensitivity for predicting adjacent segment disease of 71 %, a specificity of 81 % and an odds ratio of 10.6. In degenerative disease of the lumbar spine a high pelvic incidence with diminished lumbar lordosis seems to predispose to adjacent segment disease. Patients with such pelvic incidence

  2. The effect of base pair mismatch on DNA strand displacement

    CERN Document Server

    Broadwater, Bo

    2016-01-01

    DNA strand displacement is a key reaction in DNA homologous recombination and DNA mismatch repair and is also heavily utilized in DNA-based computation and locomotion. Despite its ubiquity in science and engineering, sequence-dependent effects of displacement kinetics have not been extensively characterized. Here, we measured toehold-mediated strand displacement kinetics using single-molecule fluorescence in the presence of a single base pair mismatch. The apparent displacement rate varied significantly when the mismatch was introduced in the invading DNA strand. The rate generally decreased as the mismatch in the invader was encountered earlier in displacement. Our data indicate that a single base pair mismatch in the invader stalls branch migration, and displacement occurs via direct dissociation of the destabilized incumbent strand from the substrate strand. We combined both branch migration and direct dissociation into a model, which we term, the concurrent displacement model, and used the first passage t...

  3. Mismatch repair in Streptococcus pneumoniae: relationship between base mismatches and transformation efficiencies.

    Science.gov (United States)

    Claverys, J P; Méjean, V; Gasc, A M; Sicard, A M

    1983-10-01

    Genetic transformation in Streptococcus pneumoniae involves the insertion of single-stranded pieces of donor DNA into a recipient genome. Efficiencies of transformation strongly depend on the mutations (markers) carried by donor DNA. Markers are classified according to their transforming efficiencies into very high, high, intermediate, and low efficiency. The last is approximately 1/20th as efficient as the first. This marker effect is under the control of the Hex system, which is thought to correct mismatches at the donor-recipient heteroduplex stage in transformation. To investigate this effect, wild type, mutant, and revertant DNA sequences at five genetic sites within the amiA locus were determined. The results show that low-efficiency markers arise from transitional changes A . T to G . C. The transversion A . T to T . A corresponds to an intermediate-efficiency marker. Transversions G . C to T . A and G . C to C . G lead to high-efficiency markers. Among the eight possible mismatches that could exist transiently at the heteroduplex stage in transformation, only two--namely, A/G and C/C--are not corrected by the Hex system. It is noteworthy that the four possible base pairs (A . T, T . A, G . C, and C . G) have been encountered at the very same site (amiA6 site), which constitutes a good illustration of the marker effect. DNA sequence analysis also reveals that short deletions (33 or 34 bases long) are integrated with very high efficiencies. These results confirm that the Hex system corrects point mismatches harbored in donor-recipient heteroduplexes thousands of bases long. The correction pattern of the Hex system toward multiple-base mismatches has also been investigated. Its behavior toward double-base mismatches is complex, suggesting that neighboring sequences may affect the detection of mispaired bases.

  4. The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles).

    Science.gov (United States)

    Bhattacharyya, A; Lilley, D M

    1989-09-12

    We have studied the structure and reactivities of two kinds of mismatched DNA sequences--unopposed bases, or bulges, and multiple mismatched pairs of bases. These were generated in a constant sequence environment, in relatively long DNA fragments, using a technique based on heteroduplex formation between sequences cloned into single-stranded M13 phage. The mismatched sequences were studied from two points of view, viz 1. The mobility of the fragments on gel electrophoresis in polyacrylamide was studied in order to examine possible bending of the DNA due to the presence of the mismatch defect. Such bending would constitute a global effect on the conformation of the molecule. 2. Sequences in and around the mismatches were studied using enzyme and chemical probes of DNA structure. This would reveal more local structural effects of the mismatched sequences. We observed that the structures of the bulges and the multiple mismatches appear to be fundamentally different. The bulged sequences exhibited a large gel retardation, consistent with a significant bending of the DNA at the bulge, and whose magnitude depends on the number of mismatched bases. The larger bulges were sensitive to cleavage by single-strand specific nucleases, and modified by diethyl pyrocarbonate (adenines) or osmium tetroxide (thymines) in a non-uniform way, suggesting that the bulges have a precise structure that leads to exposure of some, but not all, of the bases. In contrast the multiple mismatches ('bubbles') cause very much less bending of the DNA fragment in which they occur, and uniform patterns of chemical reactivity along the length of the mismatched sequences, suggesting a less well defined, and possibly flexible, structure. The precise structure of the bulges suggests that such features may be especially significant for recognition by proteins.

  5. AN INTEGRATED RANSAC AND GRAPH BASED MISMATCH ELIMINATION APPROACH FOR WIDE-BASELINE IMAGE MATCHING

    Directory of Open Access Journals (Sweden)

    M. Hasheminasab

    2015-12-01

    Full Text Available In this paper we propose an integrated approach in order to increase the precision of feature point matching. Many different algorithms have been developed as to optimizing the short-baseline image matching while because of illumination differences and viewpoints changes, wide-baseline image matching is so difficult to handle. Fortunately, the recent developments in the automatic extraction of local invariant features make wide-baseline image matching possible. The matching algorithms which are based on local feature similarity principle, using feature descriptor as to establish correspondence between feature point sets. To date, the most remarkable descriptor is the scale-invariant feature transform (SIFT descriptor , which is invariant to image rotation and scale, and it remains robust across a substantial range of affine distortion, presence of noise, and changes in illumination. The epipolar constraint based on RANSAC (random sample consensus method is a conventional model for mismatch elimination, particularly in computer vision. Because only the distance from the epipolar line is considered, there are a few false matches in the selected matching results based on epipolar geometry and RANSAC. Aguilariu et al. proposed Graph Transformation Matching (GTM algorithm to remove outliers which has some difficulties when the mismatched points surrounded by the same local neighbor structure. In this study to overcome these limitations, which mentioned above, a new three step matching scheme is presented where the SIFT algorithm is used to obtain initial corresponding point sets. In the second step, in order to reduce the outliers, RANSAC algorithm is applied. Finally, to remove the remained mismatches, based on the adjacent K-NN graph, the GTM is implemented. Four different close range image datasets with changes in viewpoint are utilized to evaluate the performance of the proposed method and the experimental results indicate its robustness and

  6. Single-molecule multiparameter fluorescence spectroscopy reveals directional MutS binding to mismatched bases in DNA

    NARCIS (Netherlands)

    M. Cristovao (Michele); E. Sisamakis (Evangelos); M.M. Hingorani (Manju); A.D. Marx (Andreas); C.P. Jung (Caroline); P.J. Rothwell (Paul); C.A.M. Seidel (Claus A.); P. Friedhoff (Peter)

    2012-01-01

    textabstractMismatch repair (MMR) corrects replication errors such as mismatched bases and loops in DNA. The evolutionarily conserved dimeric MMR protein MutS recognizes mismatches by stacking a phenylalanine of one subunit against one base of the mismatched pair. In all crystal structures of G:T mi

  7. Single-molecule multiparameter fluorescence spectroscopy reveals directional MutS binding to mismatched bases in DNA

    NARCIS (Netherlands)

    M. Cristovao (Michele); E. Sisamakis (Evangelos); M.M. Hingorani (Manju); A.D. Marx (Andreas); C.P. Jung (Caroline); P.J. Rothwell (Paul); C.A.M. Seidel (Claus A.); P. Friedhoff (Peter)

    2012-01-01

    textabstractMismatch repair (MMR) corrects replication errors such as mismatched bases and loops in DNA. The evolutionarily conserved dimeric MMR protein MutS recognizes mismatches by stacking a phenylalanine of one subunit against one base of the mismatched pair. In all crystal structures of G:T

  8. Memory-based mismatch response to frequency changes in rats.

    Directory of Open Access Journals (Sweden)

    Piia Astikainen

    Full Text Available Any occasional changes in the acoustic environment are of potential importance for survival. In humans, the preattentive detection of such changes generates the mismatch negativity (MMN component of event-related brain potentials. MMN is elicited to rare changes ('deviants' in a series of otherwise regularly repeating stimuli ('standards'. Deviant stimuli are detected on the basis of a neural comparison process between the input from the current stimulus and the sensory memory trace of the standard stimuli. It is, however, unclear to what extent animals show a similar comparison process in response to auditory changes. To resolve this issue, epidural potentials were recorded above the primary auditory cortex of urethane-anesthetized rats. In an oddball condition, tone frequency was used to differentiate deviants interspersed randomly among a standard tone. Mismatch responses were observed at 60-100 ms after stimulus onset for frequency increases of 5% and 12.5% but not for similarly descending deviants. The response diminished when the silent inter-stimulus interval was increased from 375 ms to 600 ms for +5% deviants and from 600 ms to 1000 ms for +12.5% deviants. In comparison to the oddball condition the response also diminished in a control condition in which no repetitive standards were presented (equiprobable condition. These findings suggest that the rat mismatch response is similar to the human MMN and indicate that anesthetized rats provide a valuable model for studies of central auditory processing.

  9. Model Mismatch Paradigm for Probe based Nanoscale Imaging

    Science.gov (United States)

    Agarwal, Pranav

    Scanning Probe Microscopes (SPMs) are widely used for investigation of material properties and manipulation of matter at the nanoscale. These instruments are considered critical enablers of nanotechnology by providing the only technique for direct observation of dynamics at the nanoscale and affecting it with sub Angstrom resolution. Current SPMs are limited by low throughput and lack of quantitative measurements of material properties. Various applications like the high density data storage, sub-20 nm lithography, fault detection and functional probing of semiconductor circuits, direct observation of dynamical processes involved in biological samples viz. motor proteins and transport phenomena in various materials demand high throughput operation. Researchers involved in material characterization at nanoscale are interested in getting quantitative measurements of stiffness and dissipative properties of various materials in a least invasive manner. In this thesis, system theoretic concepts are used to address these limitations. The central tenet of the thesis is to model, the known information about the system and then focus on perturbations of these known dynamics or model, to sense the effects due to changes in the environment such as changes in material properties or surface topography. Thus a model mismatch paradigm for probe based nanoscale imaging is developed. The topic is developed by presenting physics based modeling of a particular mode of operation of SPMs called the dynamic mode operation. This mode is modeled as a forced Lure system where a linear time invariant system is in feedback with an unknown static memoryless nonlinearity. Tools from averaging theory are used to tame this complex nonlinear system by approximating it as a linear system with time varying parameters. Material properties are thus transformed from being parameters of unknown nonlinear functions to being unknown coefficients of a linear plant. The first contribution of this thesis

  10. A P300 brain-computer interface based on a modification of the mismatch negativity paradigm.

    Science.gov (United States)

    Jin, Jing; Sellers, Eric W; Zhou, Sijie; Zhang, Yu; Wang, Xingyu; Cichocki, Andrzej

    2015-05-01

    The P300-based brain-computer interface (BCI) is an extension of the oddball paradigm, and can facilitate communication for people with severe neuromuscular disorders. It has been shown that, in addition to the P300, other event-related potential (ERP) components have been shown to contribute to successful operation of the P300 BCI. Incorporating these components into the classification algorithm can improve the classification accuracy and information transfer rate (ITR). In this paper, a single character presentation paradigm was compared to a presentation paradigm that is based on the visual mismatch negativity. The mismatch negativity paradigm showed significantly higher classification accuracy and ITRs than a single character presentation paradigm. In addition, the mismatch paradigm elicited larger N200 and N400 components than the single character paradigm. The components elicited by the presentation method were consistent with what would be expected from a mismatch paradigm and a typical P300 was also observed. The results show that increasing the signal-to-noise ratio by increasing the amplitude of ERP components can significantly improve BCI speed and accuracy. The mismatch presentation paradigm may be considered a viable option to the traditional P300 BCI paradigm.

  11. Examining the Mismatch between Pupil and Teacher Knowledge in Acid-Base Chemistry.

    Science.gov (United States)

    Erduran, Sibel

    2003-01-01

    Reports a mismatch between teacher and pupil knowledge of acid-base chemistry as a result of controversial episodes from three science lessons. Suggests that the teacher's knowledge is guided by textbook information while the pupil's knowledge is based on direct experimental experience. Proposes that classroom activities should support the…

  12. Temperature dependence of gamma-gamma prime lattice mismatch in nickel-base superalloys

    Science.gov (United States)

    Nathal, M. V.; Mackay, R. A.; Garlick, R. G.

    1985-01-01

    High temperature X-ray diffraction techniques were used to determine the gamma-gamma prime lattice mismatch of three different nickel-base superalloys at temperatures between 18 and 1000 C. The measurements were performed on oriented single-crystal disks which had been aged to produce a semicoherent gamma-gamma prime structure. The thermal expansion of the lattice parameters of the gamma and gamma-prime phases was described by a second-order polynomial expression. The expansion of the gamma-prime phase was consistently smaller than that of the gamma phase, which caused the lattice mismatch to become more negative at higher temperatures. It was also shown that high values of lattice mismatch resulted in increased rates of directional gamma-prime coarsening during elevated temperature creep exposure.

  13. Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays

    NARCIS (Netherlands)

    Urakawa, H.; Fantroussi, El S.; Smidt, H.; Smoot, J.C.; Tribou, E.H.; Kelly, J.J.; Noble, P.A.; Stahl, D.A.

    2003-01-01

    The discrimination between perfect-match and single-base-pair-mismatched nucleic acid duplexes was investigated by using oligonucleotide DNA microarrays and nonequilibrium dissociation rates (melting profiles). DNA and RNA versions of two synthetic targets corresponding to the 16S rRNA sequences of

  14. A periodic table of symmetric tandem mismatches in RNA.

    Science.gov (United States)

    Wu, M; McDowell, J A; Turner, D H

    1995-03-14

    The stabilities and structures of a series of RNA octamers containing symmetric tandem mismatches were studied by UV melting and imino proton NMR. The free energy increments for tandem mismatch formation are found to depend upon both mismatch sequence and adjacent base pairs. The observed sequence dependence of tandem mismatch stability is UGGU > GUUG > GAAG > or = AGGA > UUUU > CAAC > or = CUUC approximately UCCU approximately CCCC approximately ACCA approximately AAAA, and the closing base pair dependence is 5'G3'C > 5'C3'G > 5'U3'A approximately 5'A3'U. These results differ from expectations based on models used in RNA folding algorithms and from the sequence dependence observed for folding of RNA hairpins. Imino proton NMR results indicate the sequence dependence is partially due to hydrogen bonding within mismatches.

  15. Unique magnetic signatures of mismatched base pairs in DNA

    Science.gov (United States)

    Apalkov, Vadim; Berashevich, Julia; Chakraborty, Tapash

    2010-02-01

    Magnetic properties of DNA containing mispairs, such as different conformations of the GṡA mispair, or a GṡT mispair inserted into the DNA chain, have been theoretically investigated. The essential ingredients for these studies, the charge transfer integrals, were evaluated from the DNA sequences containing the mispair and optimized in the solvent. We find that the magnetic susceptibilities of the host DNA chain containing a large number of Watson-Crick base pairs are significantly altered in the presence of the mispairs, and the effects depend on the choice of mispairs. In particular, insertion of even a single GṡA mispair changes the nature of magnetization (sign of the susceptibility) of the host DNA. We propose that measurement of the magnetic properties of DNA might provide a direct route to detection and identification of those mispairs.

  16. DNA tandem repeat instability in the Escherichia coli chromosome is stimulated by mismatch repair at an adjacent CAG·CTG trinucleotide repeat

    Science.gov (United States)

    Blackwood, John K.; Okely, Ewa A.; Zahra, Rabaab; Eykelenboom, John K.; Leach, David R. F.

    2010-01-01

    Approximately half the human genome is composed of repetitive DNA sequences classified into microsatellites, minisatellites, tandem repeats, and dispersed repeats. These repetitive sequences have coevolved within the genome but little is known about their potential interactions. Trinucleotide repeats (TNRs) are a subclass of microsatellites that are implicated in human disease. Expansion of CAG·CTG TNRs is responsible for Huntington disease, myotonic dystrophy, and a number of spinocerebellar ataxias. In yeast DNA double-strand break (DSB) formation has been proposed to be associated with instability and chromosome fragility at these sites and replication fork reversal (RFR) to be involved either in promoting or in preventing instability. However, the molecular basis for chromosome fragility of repetitive DNA remains poorly understood. Here we show that a CAG·CTG TNR array stimulates instability at a 275-bp tandem repeat located 6.3 kb away on the Escherichia coli chromosome. Remarkably, this stimulation is independent of both DNA double-strand break repair (DSBR) and RFR but is dependent on a functional mismatch repair (MMR) system. Our results provide a demonstration, in a simple model system, that MMR at one type of repetitive DNA has the potential to influence the stability of another. Furthermore, the mechanism of this stimulation places a limit on the universality of DSBR or RFR models of instability and chromosome fragility at CAG·CTG TNR sequences. Instead, our data suggest that explanations of chromosome fragility should encompass the possibility of chromosome gaps formed during MMR. PMID:21149728

  17. Maximum Likelihood A Priori Knowledge Interpolation-Based Handset Mismatch Compensation for Robust Speaker Identification

    Institute of Scientific and Technical Information of China (English)

    LIAO Yuanfu; ZHUANG Zhixian; YANG Jyhher

    2008-01-01

    Unseen handset mismatch is the major source of performance degradation in speaker identifica-tion in telecommunication environments.To alleviate the problem,a maximum likelihood a priori knowledge interpolation (ML-AKI)-based handset mismatch compensation approach is proposed.It first collects a set of handset characteristics of seen handsets to use as the a priori knowledge for representing the space of handsets.During evaluation the characteristics of an unknown test handset are optimally estimated by in-terpolation from the set of the a pdod knowledge.Experimental results on the HTIMIT database show that the ML-AKI method can improve the average speaker identification rate from 60.0% to 74.6% as compared with conventional maximum a posteriori-adapted Gaussian mixture models.The proposed ML-AKI method is a promising method for robust speaker identification.

  18. 33 CFR 334.1060 - Oakland Outer Harbor adjacent to the Oakland Army Base; restricted area.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 3 2010-07-01 2010-07-01 false Oakland Outer Harbor adjacent to the Oakland Army Base; restricted area. 334.1060 Section 334.1060 Navigation and Navigable Waters... REGULATIONS § 334.1060 Oakland Outer Harbor adjacent to the Oakland Army Base; restricted area. (a) The...

  19. Gold-based optical biosensor for single-mismatched DNA detection using salt-induced hybridization

    DEFF Research Database (Denmark)

    Zhan, Zongrui; Ma, Xingyi; Cao, Cuong

    2011-01-01

    In this study, a gold nanoparticle (Au-NP)-based detection method for sensitive and specific DNA-based diagnostic applications is described. A sandwich format consisting of Au-NPs/DNA/PMP (Streptavidin-coated MagnetSphere Para-Magnetic Particles) was fabricated. PMPs captured and separated target...... in the presence of different buffers was well investigated, and thus, the optimized salt concentration allowed for discrimination of single-mismatched DNA (MMT) from perfectly matched DNA (PMT). Therefore, quantitative information concerning the target analyte was translated into a colorimetric signal, which...

  20. Non-target adjacent stimuli classification improves performance of classical ERP-based brain computer interface

    Science.gov (United States)

    Ceballos, G. A.; Hernández, L. F.

    2015-04-01

    Objective. The classical ERP-based speller, or P300 Speller, is one of the most commonly used paradigms in the field of Brain Computer Interfaces (BCI). Several alterations to the visual stimuli presentation system have been developed to avoid unfavorable effects elicited by adjacent stimuli. However, there has been little, if any, regard to useful information contained in responses to adjacent stimuli about spatial location of target symbols. This paper aims to demonstrate that combining the classification of non-target adjacent stimuli with standard classification (target versus non-target) significantly improves classical ERP-based speller efficiency. Approach. Four SWLDA classifiers were trained and combined with the standard classifier: the lower row, upper row, right column and left column classifiers. This new feature extraction procedure and the classification method were carried out on three open databases: the UAM P300 database (Universidad Autonoma Metropolitana, Mexico), BCI competition II (dataset IIb) and BCI competition III (dataset II). Main results. The inclusion of the classification of non-target adjacent stimuli improves target classification in the classical row/column paradigm. A gain in mean single trial classification of 9.6% and an overall improvement of 25% in simulated spelling speed was achieved. Significance. We have provided further evidence that the ERPs produced by adjacent stimuli present discriminable features, which could provide additional information about the spatial location of intended symbols. This work promotes the searching of information on the peripheral stimulation responses to improve the performance of emerging visual ERP-based spellers.

  1. Blind Decorrelating Detection Based on Particle Swarm Optimization under Spreading Code Mismatch

    Institute of Scientific and Technical Information of China (English)

    Jhih-Chung Chang; Chih-Chang Shen

    2014-01-01

    A way of resolving spreading code mismatches in blind multiuser detection with a particle swarm optimization (PSO) approach is proposed. It has been shown that the PSO algorithm incorporating the linear system of the decorrelating detector, which is termed as decorrelating PSO (DPSO), can significantly improve the bit error rate (BER) and the system capacity. As the code mismatch occurs, the output BER performance is vulnerable to degradation for DPSO. With a blind decorrelating scheme, the proposed blind DPSO (BDPSO) offers more robust capabilities over existing DPSO under code mismatch scenarios.

  2. Quantifying the contributions of base selectivity, proofreading and mismatch repair to nuclear DNA replication in Saccharomyces cerevisiae.

    Science.gov (United States)

    St Charles, Jordan A; Liberti, Sascha E; Williams, Jessica S; Lujan, Scott A; Kunkel, Thomas A

    2015-07-01

    Mismatches generated during eukaryotic nuclear DNA replication are removed by two evolutionarily conserved error correction mechanisms acting in series, proofreading and mismatch repair (MMR). Defects in both processes are associated with increased susceptibility to cancer. To better understand these processes, we have quantified base selectivity, proofreading and MMR during nuclear DNA replication in Saccharomyces cerevisiae. In the absence of proofreading and MMR, the primary leading and lagging strand replicases, polymerase ɛ and polymerase δ respectively, synthesize DNA in vivo with somewhat different error rates and specificity, and with apparent base selectivity that is more than 100 times higher than measured in vitro. Moreover, leading and lagging strand replication fidelity rely on a different balance between proofreading and MMR. On average, proofreading contributes more to replication fidelity than does MMR, but their relative contributions vary from nearly all proofreading of some mismatches to mostly MMR of other mismatches. Thus accurate replication of the two DNA strands results from a non-uniform and variable balance between error prevention, proofreading and MMR.

  3. DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies.

    Directory of Open Access Journals (Sweden)

    Ankita Shukla

    Full Text Available DNA repair mechanisms act as a warrior combating various damaging processes that ensue critical malignancies. DREMECELS was designed considering the malignancies with frequent alterations in DNA repair pathways, that is, colorectal and endometrial cancers, associated with Lynch syndrome (also known as HNPCC. Since lynch syndrome carries high risk (~40-60% for both cancers, therefore we decided to cover all three diseases in this portal. Although a large population is presently affected by these malignancies, many resources are available for various cancer types but no database archives information on the genes specifically for only these cancers and disorders. The database contains 156 genes and two repair mechanisms, base excision repair (BER and mismatch repair (MMR. Other parameters include some of the regulatory processes that have roles in these disease progressions due to incompetent repair mechanisms, specifically BER and MMR. However, our unique database mainly provides qualitative and quantitative information on these cancer types along with methylation, drug sensitivity, miRNAs, copy number variation (CNV and somatic mutations data. This database would serve the scientific community by providing integrated information on these disease types, thus sustaining diagnostic and therapeutic processes. This repository would serve as an excellent accompaniment for researchers and biomedical professionals and facilitate in understanding such critical diseases. DREMECELS is publicly available at http://www.bioinfoindia.org/dremecels.

  4. Correction of refraction index based on adjacent pulse repetition interval lengths

    Science.gov (United States)

    Wei, Dong; Aketagawa, Masato

    2014-11-01

    Correction of refraction index is important for length measurement. The two-color method has been widely used for correction. The wavelengths of lasers have been used as a ruler of that. Based on the analogy between the wavelength and the adjacent pulse repetition interval length (APRIL), in this paper we investigate the possibility of two-color method based on adjacent pulse repetition interval lengths. Since the wavelength-based two-color method can eliminate the inhomogeneous disturbance of effects caused by the phase refractive index, therefore the APRIL-based two-color method can eliminate the air turbulence of errors induced by the group refractive index. Our analysis will contribute to high-precision length measurement.

  5. Label-free detection of DNA single-base mismatches using a simple reflectance-based optical technique.

    Science.gov (United States)

    Nava, G; Ceccarello, E; Giavazzi, F; Salina, M; Damin, F; Chiari, M; Buscaglia, M; Bellini, T; Zanchetta, G

    2016-05-21

    Rapid and quantitative detection of the binding of nucleic acids to surface-immobilized probes remains a challenge in many biomedical applications. We investigated the hybridization of a set of fully complementary and defected 12-base long DNA oligomers by using the Reflective Phantom Interface (RPI), a recently developed multiplexed label-free detection technique. Based on the simple measurement of reflected light intensity, this technology enables to quantify the hybridization directly as it occurs on the surface with a sensitivity of 10 pg mm(-2). We found a strong effect of single-base mismatches and of their location on hybridization kinetics and equilibrium binding. In line with previous studies, we found that DNA-DNA binding is weaker on a surface than in the bulk. Our data indicate that this effect is a consequence of weak nonspecific binding of the probes to the surface.

  6. Adjacent Lane Detection and Lateral Vehicle Distance Measurement Using Vision-Based Neuro-Fuzzy Approaches

    Directory of Open Access Journals (Sweden)

    C.F. Wu

    2013-04-01

    Full Text Available The aim of this article attempts to propose an advanced design of driver assistance system which can provide the driver advisable information about the adjacent lanes and approaching lateral vehicles. The experimental vehicle has a camera mounted at the left side rear view mirror which captures the images of adjacent lane. The detection of lane lines is implemented with methods based on image processing techniques. The candidates for lateral vehicle are explored with lane-based transformation, and each one is verified with the characteristics of its length, width, time duration, and height. Finally, the distances of lateral vehicles are estimated with the well-trained recurrent functional neuro-fuzzy network. The system is tested with nine video sequences captured when the vehicle is driving on Taiwan’s highway, and the experimental results show it works well for different road conditions and for multiple vehicles.

  7. Adjacent Lane Detection and Lateral Vehicle Distance Measurement Using Vision-Based Neuro-Fuzzy Approaches

    Directory of Open Access Journals (Sweden)

    C. F. Wu

    2013-03-01

    Full Text Available The aim of this article attempts to propose an advanced design of driver assistance system which can provide thedriver advisable information about the adjacent lanes and approaching lateral vehicles. The experimental vehiclehas a camera mounted at the left side rear view mirror which captures the images of adjacent lane. The detectionof lane lines is implemented with methods based on image processing techniques. The candidates for lateralvehicle are explored with lane-based transformation, and each one is verified with the characteristics of its length,width, time duration, and height. Finally, the distances of lateral vehicles are estimated with the well-trainedrecurrent functional neuro-fuzzy network. The system is tested with nine video sequences captured when thevehicle is driving on Taiwan’s highway, and the experimental results show it works well for different road conditionsand for multiple vehicles.

  8. Computation over Mismatched Channels

    CERN Document Server

    Karamchandani, Nikhil; Diggavi, Suhas

    2012-01-01

    We consider the problem of distributed computation of a target function over a multiple-access channel. If the target and channel functions are matched (i.e., compute the same function), significant performance gains can be obtained by jointly designing the computation and communication tasks. However, in most situations there is mismatch between these two functions. In this work, we analyze the impact of this mismatch on the performance gains achievable with joint computation and communication designs over separation-based designs. We show that for most pairs of target and channel functions there is no such gain, and separation of computation and communication is optimal.

  9. A Layered Zone Routing Algorithm in Ad Hoc Network Based on Matrix of Adjacency Connection

    Institute of Scientific and Technical Information of China (English)

    XU Guang-wei; LI Feng; SHI Xiu-jin; HUO Jia-zhen

    2007-01-01

    The hybrid routing protocol has received more attention recently than the proactive and the reactive, especially for large-scale and highly dynamic connection, in mobile ad hoc network. A crucial reason is that zone-layered is being utilized in the complex systems. A hybrid routing algorithm which is layered zone based on adjacency connection(LZBAC) is put forward under the background of a few members in network with steady position and link. The algorithm modifies storage structure of nodes and improves routing mechanism. The theoretical analysis and simulation testing testify that the algorithm costs shorter time of route finding and less delay than others.

  10. Mismatched base-pair simulations for ASFV Pol X/DNA complexes help interpret frequent G*G misincorporation.

    Science.gov (United States)

    Sampoli Benítez, Benedetta A; Arora, Karunesh; Balistreri, Lisa; Schlick, Tamar

    2008-12-31

    DNA polymerase X (pol X) from the African swine fever virus is a 174-amino-acid repair polymerase that likely participates in a viral base excision repair mechanism, characterized by low fidelity. Surprisingly, pol X's insertion rate of the G*G mispair is comparable to that of the four Watson-Crick base pairs. This behavior is in contrast with another X-family polymerase, DNA polymerase beta (pol beta), which inserts G*G mismatches poorly, and has higher DNA repair fidelity. Using molecular dynamics simulations, we previously provided support for an induced-fit mechanism for pol X in the presence of the correct incoming nucleotide. Here, we perform molecular dynamics simulations of pol X/DNA complexes with different incoming incorrect nucleotides in various orientations [C*C, A*G, and G*G (anti) and A*G and G*G (syn)] and compare the results to available kinetic data and prior modeling. Intriguingly, the simulations reveal that the G*G mispair with the incoming nucleotide in the syn configuration undergoes large-scale conformational changes similar to that observed in the presence of correct base pair (G*C). The base pairing in the G*G mispair is achieved via Hoogsteen hydrogen bonding with an overall geometry that is well poised for catalysis. Simulations for other mismatched base pairs show that an intermediate closed state is achieved for the A*G and G*G mispair with the incoming dGTP in anti conformation, while the protein remains near the open conformation for the C*C and the A*G syn mismatches. In addition, catalytic site geometry and base pairing at the nascent template-incoming nucleotide interaction reveal distortions and misalignments that range from moderate for A*G anti to worst for the C*C complex. These results agree well with kinetic data for pol X and provide a structural/dynamic basis to explain, at atomic level, the fidelity of this polymerase compared with other members of the X family. In particular, the more open and pliant active site of pol X

  11. Estimation of channel mismatches in time-interleaved analog-to-digital converters based on fractional delay and sine curve fitting.

    Science.gov (United States)

    Guo, Lianping; Tian, Shulin; Jiang, Jun

    2015-03-01

    This paper proposes an algorithm to estimate the channel mismatches in time-interleaved analog-to-digital converter (TIADC) based on fractional delay (FD) and sine curve fitting. Choose one channel as the reference channel and apply FD to the output samples of reference channel to obtain the ideal samples of non-reference channels with no mismatches. Based on least square method, the sine curves are adopted to fit the ideal and the actual samples of non-reference channels, and then the mismatch parameters can be estimated by comparing the ideal sine curves and the actual ones. The principle of this algorithm is simple and easily understood. Moreover, its implementation needs no extra circuits, lowering the hardware cost. Simulation results show that the estimation accuracy of this algorithm can be controlled within 2%. Finally, the practicability of this algorithm is verified by the measurement results of channel mismatch errors of a two-channel TIADC prototype.

  12. Adjacency matrix-based transmit power allocation strategies in wireless sensor networks.

    Science.gov (United States)

    Consolini, Luca; Medagliani, Paolo; Ferrari, Gianluigi

    2009-01-01

    In this paper, we present an innovative transmit power control scheme, based on optimization theory, for wireless sensor networks (WSNs) which use carrier sense multiple access (CSMA) with collision avoidance (CA) as medium access control (MAC) protocol. In particular, we focus on schemes where several remote nodes send data directly to a common access point (AP). Under the assumption of finite overall network transmit power and low traffic load, we derive the optimal transmit power allocation strategy that minimizes the packet error rate (PER) at the AP. This approach is based on modeling the CSMA/CA MAC protocol through a finite state machine and takes into account the network adjacency matrix, depending on the transmit power distribution and determining the network connectivity. It will be then shown that the transmit power allocation problem reduces to a convex constrained minimization problem. Our results show that, under the assumption of low traffic load, the power allocation strategy, which guarantees minimal delay, requires the maximization of network connectivity, which can be equivalently interpreted as the maximization of the number of non-zero entries of the adjacency matrix. The obtained theoretical results are confirmed by simulations for unslotted Zigbee WSNs.

  13. Disturbance observer-based control for nonlinear systems subject to mismatched disturbances with application to hypersonic flight vehicles

    Directory of Open Access Journals (Sweden)

    Yunling Li

    2017-03-01

    Full Text Available For a class of multi-input multi-output nonlinear systems, a disturbance observer-based control is proposed to solve the tracking problem in the presence of mismatched disturbances. By designing a novel compensation gain matrix, the disturbances can be removed from the output channel completely as well as retaining the nominal performance. Compared with the state of the art, the gain matrix reduces to be constant; therefore, the complexity of the controller is simplified greatly. This method is applied to the control of hypersonic flight vehicles to demonstrate its effectiveness.

  14. Strategies for tuning phonon transport in multilayered structures using a mismatch-based particle model

    Science.gov (United States)

    Le, Nam Q.; Duda, John C.; English, Timothy S.; Hopkins, Patrick E.; Beechem, Thomas E.; Norris, Pamela M.

    2012-04-01

    The performance of many micro- and nanoscale devices depends on the ability to control interfacial thermal transport, which is predominantly mediated by phonons in semiconductor systems. The phonon transmissivity at an interface is therefore a quantity of interest. In this work, an empirical model, termed the thermal mismatch model, is developed to predict transmissivity at ideal interfaces between semiconductor materials, producing an excellent agreement with molecular dynamics simulations of wave packets. To investigate propagation through multilayered structures, this thermal mismatch model is then incorporated into a simulation scheme that represents wave packets as particles, showing a good agreement with a similar scheme that used molecular dynamics simulations as input [P. K. Schelling and S. R. Phillpot, J. Appl. Phys. 93, 5377 (2003)]. With these techniques validated for both single interfaces and superlattices, they are further used to identify ways to tune the transmissivity of multilayered structures. It is shown that by introducing intermediate layers of certain atomic masses, the total transmissivity can either be systematically enhanced or reduced compared to that of a single interface. Thus, this model can serve as a computationally inexpensive means of developing strategies to control phonon transmissivity in applications that may benefit from either enhancement (e.g., microelectronics) or reduction (e.g., thermoelectrics) in thermal transport.

  15. A Novel Electrochemical Sensor Based on [Ru(NH3)6]Cl3 as a Redox Indicator for the Detection of G-G Mismatched DNA.

    Science.gov (United States)

    Zhu, Xiaoqian; Huang, Min; Li, Jiao; He, Hanping; Zhang, Xiuhua; Wang, Shengfu

    2017-01-01

    In this paper, a novel electrochemical sensor was developed for the rapid detection of G-G mismatched DNA based on hexaammineruthenium(III) chloride ([Ru(NH3)6]Cl3) as a redox indicator. The sensor platform was constructed by immobilizing small molecules (NC-linker) on the gold electrode via amide bonds. The as-prepared NC-linker as the nucleic acids recognition molecule can interact with the G base of DNA. After the sensor was incubated with G-G mismatched DNA, the double-stranded DNA (dsDNA) acted as carriers of the signal tags-[Ru(NH3)6]Cl3, which resulted in a remarkable electrochemical signal. More binding of [Ru(NH3)6]Cl3 led to increases of the electrochemical signal. Other mismatched DNA produced only a low response, as well as complementary DNA. Thus G-G mismatched DNA can be easily discriminated from other mismatched and complementary DNA based on the sensor. Furthermore, the method was simple, rapid and repeatable for the detection of G-G mismatched DNA. The selective detection of target dsDNA was achieved by a relative current ratio of the target and control DNA. These results demonstrated that this strategy could provide great promise for the rapid and specific detection of other sequence-specific DNA.

  16. Extraction of Winter Wheat Area and Growth Analysis Based on Remote Sensing Imagery of Adjacent Tracks

    Directory of Open Access Journals (Sweden)

    LIN Fen

    2016-07-01

    Full Text Available Winter wheat is one of the most valuable crops in Northern China, so getting a good knowledge of real-time information of its area and growing situation can help the manager of agricultural production and financial departments to make better decisions, meanwhile it can also increase the output capacity and farmers' income. In this paper, Binzhou City and Dongying City of Shandong Province were taken as the research areas. We extracted the information of winter wheat from ETM+ remote sensing image based on a combined method of principal component analysis, supervised and unsupervised classification. The growing situation of winter wheat in Binzhou was estimated through clustering analysis in SPSS, and winter wheat growing situation in Dongying was predicted by building vegetation growing situation hierarchical model in adjacent tracks using the distance-weighted method. The results showed that the mean extracting precision was 93.79%. There was a clear tendency of its distribution with characteristics of concentrated in the west and in the south other than that in the east and in the north. Also the regions where the wheat was concentrately distributed had better growth in general. We found that the vegetation growing situation hierarchical model built with distance-weighted method in the overlapping areas could eliminate the time differences between two remote sensing images in adjacent tracks to some extent, and it was beneficial for winter wheat growth analysis in large-scale regions.

  17. Adjacency Matrix Based Energy Efficient Scheduling using S-MAC Protocol in Wireless Sensor Networks

    CERN Document Server

    Singh, Shweta

    2012-01-01

    Communication is the main motive in any Networks whether it is Wireless Sensor Network, Ad-Hoc networks, Mobile Networks, Wired Networks, Local Area Network, Metropolitan Area Network, Wireless Area Network etc, hence it must be energy efficient. The main parameters for energy efficient communication are maximizing network lifetime, saving energy at the different nodes, sending the packets in minimum time delay, higher throughput etc. This paper focuses mainly on the energy efficient communication with the help of Adjacency Matrix in the Wireless Sensor Networks. The energy efficient scheduling can be done by putting the idle node in to sleep node so energy at the idle node can be saved. The proposed model in this paper first forms the adjacency matrix and broadcasts the information about the total number of existing nodes with depths to the other nodes in the same cluster from controller node. When every node receives the node information about the other nodes for same cluster they communicate based on the s...

  18. Trifunctional fluorescent unnatural nucleoside: Label free detection of T-T/C-C base mismatches, abasic site and bulge DNA.

    Science.gov (United States)

    Bag, Subhendu Sekhar; Pradhan, Manoj Kumar; Talukdar, Sangita

    2017-08-01

    The detection and targeting of both the mismatched and abasic DNA is highly important which would ultimately help in designing new diagnostics and chemotherapeutics. Furthermore, sensing and targeting the bulge sequence with a fluorescent probe would be useful to study the role of bulges in nucleic acid function or could have significant therapeutic potential. Thus, detection of specific bulges by small fluorescent molecules is an attractive research area since the past several years. Many attempts have been made to prepare such compounds. We report herein a label free strategy for the detection of pyrimidine base mismatches (T/T and C/C), sensing of abasic site, and pyrimidine base bulge DNA using an unnatural tetrazolylpyrene nucleoside ((TPy)B(Do)) as a bare fluorescent probe. The H-bonding/hydrophobic force mediated interactions allow the sensing of all three deformed DNA via an enhancement of fluorescence signal using our simple "Just-Mix and Read" strategy. The binding of the probe to all the three deformed DNA duplexes is accompanied by an increase in the thermal melting stability of the deformed DNAs. That the probe binds efficiently to the minor groove near the deformed site was evident from spectroscopic studies. All the spectral evidences open up a multitude of possibilities for using our probe, tetrazolylpyrene nucleoside, as an efficient fluorescent light-up bio-probe for label free DNA detection. Copyright © 2017. Published by Elsevier B.V.

  19. A modified Kelvin impact model for pounding simulation of base-isolated building with adjacent structures

    Institute of Scientific and Technical Information of China (English)

    Ye Kun; Li Li; Zhu Hongping

    2009-01-01

    Base isolation can effectively reduce the seismic forces on a superstructure, particularly in low- to medium-rise buildings. However, under strong near-fault ground motions, pounding may occur at the isolation level between the base-isolated building (BIB) and its surrounding retaining walls. To effectively investigate the behavior of the BIB pounding with adjacent structures, after assessing some commonly used impact models, a modified Kelvin impact model is proposed in this paper. Relevant parameters in the modified Kelvin model are theoretically derived and numerically verified through a simple pounding case. At the same time, inelasticity of the isolated superstructure is introduced in order to accurately evaluate the potential damage to the superstructure caused by the pounding of the BIB with adjacent structures. The reliability of the modified Kelvin impact model is validated through numerical comparisons with other impact models. However, the difference between the numerical results from the various impact analytical models is not significant. Many numerical simulations of BIBs are conducted to investigate the influence of various design parameters and conditions on the peak inter-story drills and floor accelerations during pounding. It is shown that pounding can substantially increase floor accelerations, especially at the ground floor where impacts occur. Higher modes of vibration are excited during poundings, increasing the inter-story drifts instead of keeping a nearly rigid-body motion of the superstructure. Furthermore, higher ductility demands can be imposed on lower floors of the superstructure. Moreover, impact stiffness seems to play a significant role in the acceleration response at the isolation level and the inter-story drifts of lower floors of the superstructure. Finally, the numerical results show that excessive flexibility of the isolation system used to minimize the floor accelerations may cause the BIB to be more susceptible to pounding

  20. HNA and ANA high-affinity arrays for detections of DNA and RNA single-base mismatches.

    Science.gov (United States)

    Abramov, Mikhail; Schepers, Guy; Van Aerschot, Arthur; Van Hummelen, Paul; Herdewijn, Piet

    2008-06-15

    DNA microarrays and sensors have become essential tools in the functional analysis of sequence information. Recently we reported that chimeric hexitol (HNA) and altritol (ANA) nucleotide monomers with an anhydrohexitol sugar moiety are easily available and proved their chemistry to be compatible with DNA and RNA synthesis. In this communication we describe a novel analytical platform based on HNA and ANA units to be used as synthetic oligonucleotide arrays on a glass solid support for match/mismatch detection of DNA and RNA targets. Arrays were fabricated by immobilization of diene-modified oligonucleotides on maleimido-activated glass slides. To demonstrate the selectivity and sensitivity of the HNA/ANA arrays and to compare their properties with regular DNA arrays, sequences in the reverse transcriptase gene (codon 74) and the protease gene of HIV-1 (codon 10) were selected. Both, the relative intensity of the signal and match/mismatch discrimination increased up to fivefold for DNA targets and up to 3-3.5-fold for RNA targets applying HNA or ANA arrays (ANA>HNA>DNA). Certainly in the new field of miRNA detection, ANA arrays could prove very beneficial and their properties should be investigated in more detail.

  1. Effect of LNA- and OMeN-modified oligonucleotide probes on the stability and discrimination of mismatched base pairs of duplexes

    Indian Academy of Sciences (India)

    Ying Yan; Jing Yan; Xianyu Piao; Tianbiao Zhang; Yifu Guan

    2012-06-01

    Locked nucleic acid (LNA) and 2′--methyl nucleotide (OMeN) are the most extensively studied nucleotide analogues. Although both LNA and OMeN are characterized by the C3′-endo sugar pucker conformation, which is dominant in A-form DNA and RNA nucleotides, they demonstrate different binding behaviours. Previous studies have focused attention on their properties of duplex stabilities, hybridization kinetics and resistance against nuclease digestion; however, their ability to discriminate mismatched hybridizations has been explored much less. In this study, LNA- and OMeN-modified oligonucleotide probes have been prepared and their effects on the DNA duplex stability have been examined: LNA modifications can enhance the duplex stability, whereas OMeN modifications reduce the duplex stability. Next, we studied how the LNA:DNA and OMeN:DNA mismatches reduced the duplex stability. Melting temperature measurement showed that different LNA:DNA or OMeN:DNA mismatches indeed influence the duplex stability differently. LNA purines can discriminate LNA:DNA mismatches more effectively than LNA pyrimidines as well as DNA nucleotides. Furthermore, we designed five LNA- and five OMeN-modified oligonucleotide probes to simulate realistic situations where target–probe duplexes contain a complementary LNA:DNA or OMeN:DNA base pairs and a DNA:DNA mismatch simultaneously. The measured collective effect showed that the duplex stability was enhanced by the complementary LNA:DNA base pair but decreased by the DNA:DNA mismatch in a position-dependent manner regardless of the chemical identity and position of the complementary LNA:DNA base pair. On the other hand, the OMeN-modified probes also showed that the duplex stability was reduced by both the OMeN modification and the OMeN:DNA mismatch in a position-dependent manner.

  2. Variable length adjacent partitioning for PTS based PAPR reduction of OFDM signal

    Energy Technology Data Exchange (ETDEWEB)

    Ibraheem, Zeyid T.; Rahman, Md. Mijanur; Yaakob, S. N.; Razalli, Mohammad Shahrazel; Kadhim, Rasim A. [School of Computer and Communication Engineering, Universiti Malaysia Perlis, 02600 Arau, Perlis (Malaysia)

    2015-05-15

    Peak-to-Average power ratio (PAPR) is a major drawback in OFDM communication. It leads the power amplifier into nonlinear region operation resulting into loss of data integrity. As such, there is a strong motivation to find techniques to reduce PAPR. Partial Transmit Sequence (PTS) is an attractive scheme for this purpose. Judicious partitioning the OFDM data frame into disjoint subsets is a pivotal component of any PTS scheme. Out of the existing partitioning techniques, adjacent partitioning is characterized by an attractive trade-off between cost and performance. With an aim of determining effects of length variability of adjacent partitions, we performed an investigation into the performances of a variable length adjacent partitioning (VL-AP) and fixed length adjacent partitioning in comparison with other partitioning schemes such as pseudorandom partitioning. Simulation results with different modulation and partitioning scenarios showed that fixed length adjacent partition had better performance compared to variable length adjacent partitioning. As expected, simulation results showed a slightly better performance of pseudorandom partitioning technique compared to fixed and variable adjacent partitioning schemes. However, as the pseudorandom technique incurs high computational complexities, adjacent partitioning schemes were still seen as favorable candidates for PAPR reduction.

  3. A mismatch-based model for memory reconsolidation and extinction in attractor networks.

    Directory of Open Access Journals (Sweden)

    Remus Osan

    Full Text Available The processes of memory reconsolidation and extinction have received increasing attention in recent experimental research, as their potential clinical applications begin to be uncovered. A number of studies suggest that amnestic drugs injected after reexposure to a learning context can disrupt either of the two processes, depending on the behavioral protocol employed. Hypothesizing that reconsolidation represents updating of a memory trace in the hippocampus, while extinction represents formation of a new trace, we have built a neural network model in which either simple retrieval, reconsolidation or extinction of a stored attractor can occur upon contextual reexposure, depending on the similarity between the representations of the original learning and reexposure sessions. This is achieved by assuming that independent mechanisms mediate Hebbian-like synaptic strengthening and mismatch-driven labilization of synaptic changes, with protein synthesis inhibition preferentially affecting the former. Our framework provides a unified mechanistic explanation for experimental data showing (a the effect of reexposure duration on the occurrence of reconsolidation or extinction and (b the requirement of memory updating during reexposure to drive reconsolidation.

  4. Extraction of mismatch negativity using a resampling-based spatial filtering method

    Science.gov (United States)

    Lin, Yanfei; Wu, Wei; Wu, Chaohua; Liu, Baolin; Gao, Xiaorong

    2013-04-01

    Objective. It is currently a challenge to extract the mismatch negativity (MMN) waveform on the basis of a small number of EEG trials, which are typically unbalanced between conditions. Approach. In order to address this issue, a method combining the techniques of resampling and spatial filtering is proposed in this paper. Specifically, the first step of the method, termed ‘resampling difference’, randomly samples the standard and deviant sweeps, and then subtracts standard sweeps from deviant sweeps. The second step of the method employs the spatial filters designed by a signal-to-noise ratio maximizer (SIM) to extract the MMN component. The SIM algorithm can maximize the signal-to-noise ratio for event-related potentials (ERPs) to improve extraction. Simulation data were used to evaluate the influence of three parameters (i.e. trial number, repeated-SIM times and sampling times) on the performance of the proposed method. Main results. Results demonstrated that it was feasible and reliable to extract the MMN waveform using the method. Finally, an oddball paradigm with auditory stimuli of different frequencies was employed to record a few trials (50 trials of deviant sweeps and 250 trials of standard sweeps) of EEG data from 11 adult subjects. Results showed that the method could effectively extract the MMN using the EEG data of each individual subject. Significance. The extracted MMN waveform has a significantly larger peak amplitude and shorter latencies in response to the more deviant stimuli than in response to the less deviant stimuli, which agreed with the MMN properties reported in previous literature using grand-averaged EEG data of multi-subjects.

  5. Testing the transtheoretical model for fruit intake: comparing web-based tailored stage-matched and stage-mismatched feedback.

    Science.gov (United States)

    de Vet, Emely; de Nooijer, Jascha; de Vries, Nanne K; Brug, Johannes

    2008-04-01

    A match-mismatch test was conducted to test the transtheoretical model applied to fruit intake. Precontemplators and contemplators were randomly assigned to receive a web-based individualized precontemplation feedback (PCF), contemplation feedback (CF) or action feedback (AF) letter promoting fruit intake. Immediately and 1 week after reading this letter, post-test measures were obtained. Fruit intake increased significantly between pre- and post-test in contemplators, but not in precontemplators. No differences between the feedback conditions were found in fruit intake, stage progression, use or credibility of the feedback in precontemplators and contemplators. In precontemplators, also no differences between the conditions were found in personal relevance of the feedback. Contemplators, however, rated AF as more personally relevant than PCF or CF. To conclude, the present study failed to show superiority of stage-matched information in the promotion of fruit intake.

  6. HLAMatchmaker-based strategy to identify acceptable HLA class I mismatches for highly sensitized kidney transplant candidates.

    Science.gov (United States)

    Duquesnoy, Rene J; Witvliet, Marian; Doxiadis, Ilias I N; de Fijter, Hans; Claas, Frans H J

    2004-01-01

    HLAMatchmaker determines HLA compatibility at the level of polymorphic amino acid triplets in antibody-accessible sequence positions. Recent studies have shown that among HLA-DR-matched kidney transplants, the HLA-A,B antigen mismatches which are compatible at the triplet level have almost identical graft survival rates as the zero-HLA-A,B antigen mismatches. This finding provides the basis of a new strategy to identify HLA-mismatched organs that have similar success rates as the zero-HLA-antigen mismatches. This report describes how in conjunction with the Acceptable Mismatch program in Eurotransplant, HLAMatchmaker can expand the pool of potential donors for highly sensitized patients, for whom it is very difficult to find a compatible transplant. Sera from 35 highly sensitized kidney transplant candidates with an average PRA of 96% were screened by lymphocytotoxicity with HLA-typed panels that included cells that were selectively mismatched for one or two HLA antigens for each patient. Acceptable and unacceptable HLA-A,B antigen mismatches were determined from the serum reactivity with the cell panel. HLAMatchmaker analysis was applied to identify additional HLA class I antigens that were matched at the triplet level. For each patient, we calculated the probability of finding a donor (PFD) in the different match categories from HLA gene frequencies in the kidney donor population. The median PFD for a zero-antigen mismatch was 0.025%. Matching at the triplet level increased the median PFD to 0.037% ( P = 0.008). The median PFD was 0.058% for a 0-1-triplet mismatch and 0.226% for a 0-2-triplet mismatch. Serum screening identified acceptable antigen mismatches for 28 of 35 highly sensitized patients, and the median PFD increased to 0.307% for a zero/acceptable antigen mismatch. The application of HLAMatchmaker permitted for 33 patients (or 92%) the identification of additional antigens that were acceptable at the triplet level, and the median PFD for a zero

  7. Fusion angle affects intervertebral adjacent spinal segment joint forces-Model-based analysis of patient specific alignment.

    Science.gov (United States)

    Senteler, Marco; Weisse, Bernhard; Rothenfluh, Dominique A; Farshad, Mazda T; Snedeker, Jess G

    2017-01-01

    This study addresses the hypothesis that adjacent segment intervertebral joint loads are sensitive to the degree of lordosis that is surgically imposed during vertebral fusion. Adjacent segment degeneration is often observed after lumbar fusion, but a causative mechanism is not yet clearly evident. Altered kinematics of the adjacent segments and potentially nonphysiological mechanical joint loads have been implicated in this process. However, little is known of how altered alignment and kinematics influence loading of the adjacent intervertebral joints under consideration of active muscle forces. This study investigated these effects by simulating L4/5 fusions using kinematics-driven musculoskeletal models of one generic and eight sagittal alignment-specific models. Models featured different spinopelvic configurations but were normalized by body height, masses, and muscle properties. Fusion of the L4/5 segment was implemented in an in situ (22°), hyperlordotic (32°), and hypolordotic (8°) fashion and kinematic input parameters were changed accordingly based on findings of an in vitro investigation. Bending motion from upright standing to 45° forward flexion and back was simulated for all models in intact and fused conditions. Joint loads at adjacent levels and moment arms of spinal muscles experienced changes after all types of fusion. Hypolordotic configuration led to an increase of adjacent segment (L3/4) shear forces of 29% on average, whereas hyperlordotic fusion reduced shear by 39%. Overall, L4/5 in situ fusion resulted in intervertebral joint forces closest to intact loading conditions. An artificial decrease in lumbar lordosis (minus 14° on average) caused by an L4/5 fusion lead to adverse loading conditions, particularly at the cranial adjacent levels, and altered muscle moment arms, in particular for muscles in the vicinity of the fusion. © 2016 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 35:131-139, 2017.

  8. Targeting DNA base pair mismatch with artificial nucleobases. Advances and perspectives in triple helix strategy.

    Science.gov (United States)

    Malnuit, Vincent; Duca, Maria; Benhida, Rachid

    2011-01-21

    This review, divided into three sections, describes the contribution of the chemists' community to the development and application of triple helix strategy by using artificial nucleic acids, particularly for the recognition of DNA sequences incorporating base pair inversions. Firstly, the development of nucleobases that recognise CG inversion is surveyed followed secondly by specific recognition of TA inverted base pair. Finally, we point out in the last section recent perspectives and applications, driven from knowledge in nucleic acids interactions, in the growing field of nanotechnology and supramolecular chemistry at the border area of physics, chemistry and molecular biology.

  9. Treatment referral for sex offenders based on clinical judgment versus actuarial risk assessment: match and analysis of mismatch.

    Science.gov (United States)

    Smid, Wineke J; Kamphuis, Jan Henk; Wever, Edwin C; Van Beek, Daan

    2013-07-01

    The Risk Need Responsivity (RNR) principles (Andrews & Bonta, 2010) dictate that higher risk sex offenders should receive more intensive treatment. The present study investigates how clinically based treatment assignment relates to risk level in a sex offender sample from The Netherlands. Correlational analyses served to identify sources of mismatches: that is, variables differing significantly in their relation between treatment selection and risk level. Our study sample consisted of 194 convicted rapists and 214 convicted child molesters. All participants' criminal files were retrospectively coded in terms of the items of the STATIC-99R, PCL: SV, and SVR-20. A low to moderate correlation was observed between clinical treatment selection and actuarial risk levels. A substantial part of the sex offenders, especially child molesters, received overly intensive treatment and another substantial part, especially rapists, received treatment of lesser intensity than indicated by their risk levels. General violent and antisocial risk factors seemed to be underemphasized in the clinical evaluation of sex offenders, especially rapists. A negative attitude toward intervention was negatively associated with clinical treatment selection. It is concluded that clinical treatment selection leads to an insufficient match between risk level and treatment level and systematic use of validated structured risk assessment instruments is necessary to ensure optimal adherence to the risk principle.

  10. MRI-based mismatch detection in acute ischemic stroke: Optimal PWI maps and thresholds validated with PET.

    Science.gov (United States)

    Zaro-Weber, Olivier; Moeller-Hartmann, Walter; Siegmund, Dora; Kandziora, Alexandra; Schuster, Alexander; Heiss, Wolf-Dieter; Sobesky, Jan

    2017-09-01

    Perfusion-weighted (PW) magnetic resonance imaging (MRI) is used to detect penumbral tissue in acute stroke, but the selection of optimal PW-maps and thresholds for tissue at risk detection remains a matter of debate. We validated the performance of PW-maps with 15O-water-positron emission tomography (PET) in a large comparative PET-MR cohort of acute stroke patients. In acute and subacute stroke patients with back-to-back MRI and PET imaging, PW-maps were validated with 15O-water-PET. We pooled two different cerebral blood flow (CBF) PET-maps to define the critical flow (CF) threshold, (i) quantitative (q)CBF-PET with the CF threshold 6.1 s (AUC = 0.94) and non-deconvolved PW-time-to-peak (TTP) >4.8 s (AUC = 0.93) showed the best performance to detect the CF threshold as defined by PET. PW-Tmax with a threshold >6.1 s and TTP with a threshold >4.8 s are the most predictive in detecting the CF threshold for MR-based mismatch definition.

  11. A Novel Teaching-Learning-Based Optimization for Improved Mutagenic Primer Design in Mismatch PCR-RFLP SNP Genotyping.

    Science.gov (United States)

    Cheng, Yu-Huei

    2016-01-01

    Many single nucleotide polymorphisms (SNPs) for complex genetic diseases are genotyped by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) in small-scale basic research studies. It is an essential work to design feasible PCR-RFLP primer pair and find out available restriction enzymes to recognize the target SNP for PCR experiments. However, many SNPs are incapable of performing PCR-RFLP makes SNP genotyping become unpractical. A genetic algorithm (GA) had been proposed for designing mutagenic primer and get available restriction enzymes, but it gives an unrefined solution in mutagenic primers. In order to improve the mutagenic primer design, we propose TLBOMPD (TLBO-based Mutagenic Primer Design) a novel computational intelligence-based method that uses the notion of "teaching and learning" to search for more feasible mutagenic primers and provide the latest available restriction enzymes. The original Wallace's formula for the calculation of melting temperature is maintained, and more accurate calculation formulas of GC-based melting temperature and thermodynamic melting temperature are introduced into the proposed method. Mutagenic matrix is also reserved to increase the efficiency of judging a hypothetical mutagenic primer if involve available restriction enzymes for recognizing the target SNP. Furthermore, the core of SNP-RFLPing version 2 is used to enhance the mining work for restriction enzymes based on the latest REBASE. Twenty-five SNPs with mismatch PCR-RFLP screened from 288 SNPs in human SLC6A4 gene are used to appraise the TLBOMPD. Also, the computational results are compared with those of the GAMPD. In the future, the usage of the mutagenic primers in the wet lab needs to been validated carefully to increase the reliability of the method. The TLBOMPD is implemented in JAVA and it is freely available at http://tlbompd.googlecode.com/.

  12. Diagnosis of Constitutional Mismatch Repair-Deficiency Syndrome Based on Microsatellite Instability and Lymphocyte Tolerance to Methylating Agents

    DEFF Research Database (Denmark)

    Bodo, Sahra; Colas, Chrystelle; Buhard, Olivier

    2015-01-01

    BACKGROUND & AIMS: Patients with bi-allelic germline mutations in mismatch repair (MMR) genes (MLH1, MSH2, MSH6, or PMS2) develop a rare but severe variant of Lynch syndrome called constitutional MMR deficiency (CMMRD). This syndrome is characterized by early-onset colorectal cancers, lymphomas o...

  13. Single-subject classification of schizophrenia patients based on a combination of oddball and mismatch evoked potential paradigms.

    Science.gov (United States)

    Laton, Jorne; Van Schependom, Jeroen; Gielen, Jeroen; Decoster, Jeroen; Moons, Tim; De Keyser, Jacques; De Hert, Marc; Nagels, Guy

    2014-12-15

    The diagnostic process for schizophrenia is mainly clinical and has to be performed by an experienced psychiatrist, relying primarily on clinical signs and symptoms. Current neurophysiological measurements can distinguish groups of healthy controls and groups of schizophrenia patients. Individual classification based on neurophysiological measurements mostly shows moderate accuracy. We wanted to examine whether it is possible to distinguish controls and patients individually with a good accuracy. To this end we used a combination of features extracted from the auditory and visual P300 paradigms and the mismatch negativity paradigm. We selected 54 patients and 54 controls, matched for age and gender, from the data available at the UPC Kortenberg. The EEG-data were high- and low-pass filtered, epoched and averaged. Features (latencies and amplitudes of component peaks) were extracted from the averaged signals. The resulting dataset was used to train and test classification algorithms. First on separate paradigms and then on all combinations, we applied Naïve Bayes, Support Vector Machine and Decision Tree, with two of its improvements: Adaboost and Random Forest. For at least two classifiers the performance increased significantly by combining paradigms compared to single paradigms. The classification accuracy increased from at best 79.8% when trained on features from single paradigms, to 84.7% when trained on features from all three paradigms. A combination of features originating from three evoked potential paradigms allowed us to accurately classify individual subjects as either control or patient. Classification accuracy was mostly above 80% for the machine learners evaluated in this study and close to 85% at best. Copyright © 2014 Elsevier B.V. All rights reserved.

  14. Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency

    Directory of Open Access Journals (Sweden)

    Hsu Ming-Tsung

    2010-11-01

    Full Text Available Abstract Background Investigation of metagenomes provides greater insight into uncultured microbial communities. The improvement in sequencing technology, which yields a large amount of sequence data, has led to major breakthroughs in the field. However, at present, taxonomic binning tools for metagenomes discard 30-40% of Sanger sequencing data due to the stringency of BLAST cut-offs. In an attempt to provide a comprehensive overview of metagenomic data, we re-analyzed the discarded metagenomes by using less stringent cut-offs. Additionally, we introduced a new criterion, namely, the evolutionary conservation of adjacency between neighboring genes. To evaluate the feasibility of our approach, we re-analyzed discarded contigs and singletons from several environments with different levels of complexity. We also compared the consistency between our taxonomic binning and those reported in the original studies. Results Among the discarded data, we found that 23.7 ± 3.9% of singletons and 14.1 ± 1.0% of contigs were assigned to taxa. The recovery rates for singletons were higher than those for contigs. The Pearson correlation coefficient revealed a high degree of similarity (0.94 ± 0.03 at the phylum rank and 0.80 ± 0.11 at the family rank between the proposed taxonomic binning approach and those reported in original studies. In addition, an evaluation using simulated data demonstrated the reliability of the proposed approach. Conclusions Our findings suggest that taking account of conserved neighboring gene adjacency improves taxonomic assignment when analyzing metagenomes using Sanger sequencing. In other words, utilizing the conserved gene order as a criterion will reduce the amount of data discarded when analyzing metagenomes.

  15. Native and non-native speech sound processing and the neural mismatch responses: A longitudinal study on classroom-based foreign language learning.

    Science.gov (United States)

    Jost, Lea B; Eberhard-Moscicka, Aleksandra K; Pleisch, Georgette; Heusser, Veronica; Brandeis, Daniel; Zevin, Jason D; Maurer, Urs

    2015-06-01

    Learning a foreign language in a natural immersion context with high exposure to the new language has been shown to change the way speech sounds of that language are processed at the neural level. It remains unclear, however, to what extent this is also the case for classroom-based foreign language learning, particularly in children. To this end, we presented a mismatch negativity (MMN) experiment during EEG recordings as part of a longitudinal developmental study: 38 monolingual (Swiss-) German speaking children (7.5 years) were tested shortly before they started to learn English at school and followed up one year later. Moreover, 22 (Swiss-) German adults were recorded. Instead of the originally found positive mismatch response in children, an MMN emerged when applying a high-pass filter of 3 Hz. The overlap of a slow-wave positivity with the MMN indicates that two concurrent mismatch processes were elicited in children. The children's MMN in response to the non-native speech contrast was smaller compared to the native speech contrast irrespective of foreign language learning, suggesting that no additional neural resources were committed to processing the foreign language speech sound after one year of classroom-based learning. Copyright © 2015 Elsevier Ltd. All rights reserved.

  16. Mismatch Receptive Fields in Mouse Visual Cortex.

    Science.gov (United States)

    Zmarz, Pawel; Keller, Georg B

    2016-11-23

    In primary visual cortex, a subset of neurons responds when a particular stimulus is encountered in a certain location in visual space. This activity can be modeled using a visual receptive field. In addition to visually driven activity, there are neurons in visual cortex that integrate visual and motor-related input to signal a mismatch between actual and predicted visual flow. Here we show that these mismatch neurons have receptive fields and signal a local mismatch between actual and predicted visual flow in restricted regions of visual space. These mismatch receptive fields are aligned to the retinotopic map of visual cortex and are similar in size to visual receptive fields. Thus, neurons with mismatch receptive fields signal local deviations of actual visual flow from visual flow predicted based on self-motion and could therefore underlie the detection of objects moving relative to the visual flow caused by self-motion. VIDEO ABSTRACT.

  17. Zero energy buildings and mismatch compensation factors

    DEFF Research Database (Denmark)

    Lund, Henrik; Marszal, Anna Joanna; Heiselberg, Per

    2011-01-01

    This paper takes an overall energy system approach to analysing the mismatch problem of zero energy and zero emission buildings (ZEBs). The mismatch arises from hourly differences in energy production and consumption at the building level and results in the need for exchange of electricity via...... of the energy production unit. Based on historical data for the electricity supply area in western Denmark, this paper makes a first attempt to quantify mismatch compensation factors. The results indicate that such compensation factors are a little below one for buildings with photovoltaics (PV) and a little...... the public grid even though the building has an annual net-exchange of zero. This paper argues that, when looked upon from the viewpoint of the overall electricity supply system, a mismatch can be both negative and positive. Moreover, there are often both an element of levelling out mismatches between...

  18. Neural Correlates of Speech Segregation Based on Formant Frequencies of Adjacent Vowels

    Science.gov (United States)

    Alain, Claude; Arsenault, Jessica S.; Garami, Linda; Bidelman, Gavin M.; Snyder, Joel S.

    2017-01-01

    The neural substrates by which speech sounds are perceptually segregated into distinct streams are poorly understood. Here, we recorded high-density scalp event-related potentials (ERPs) while participants were presented with a cyclic pattern of three vowel sounds (/ee/-/ae/-/ee/). Each trial consisted of an adaptation sequence, which could have either a small, intermediate, or large difference in first formant (Δf1) as well as a test sequence, in which Δf1 was always intermediate. For the adaptation sequence, participants tended to hear two streams (“streaming”) when Δf1 was intermediate or large compared to when it was small. For the test sequence, in which Δf1 was always intermediate, the pattern was usually reversed, with participants hearing a single stream with increasing Δf1 in the adaptation sequences. During the adaptation sequence, Δf1-related brain activity was found between 100–250 ms after the /ae/ vowel over fronto-central and left temporal areas, consistent with generation in auditory cortex. For the test sequence, prior stimulus modulated ERP amplitude between 20–150 ms over left fronto-central scalp region. Our results demonstrate that the proximity of formants between adjacent vowels is an important factor in the perceptual organization of speech, and reveal a widely distributed neural network supporting perceptual grouping of speech sounds. PMID:28102300

  19. ROBUST ZERO-WATERMARK ALGORITHMS BASED ON NUMERICAL RELATIONSHIP BETWEEN ADJACENT BLOCKS

    Institute of Scientific and Technical Information of China (English)

    Zhang Yifeng; Jia Chengwei; Wang Xuechen; Wang Kai; Pei Wenjiang

    2012-01-01

    In this paper,three robust zero-watermark algorithms named Direct Current coefficient RElationship (DC-RE),CUmulant combined Singular Value Decomposition (CU-SVD),and CUmulant combined Singular Value Decomposition RElationship (CU-SVD-RE) are proposed.The algorithm DC-RE gets the feature vector from the relationship of DC coefficients between adjacent blocks,CU-SVD gets the feature vector from the singular value of third-order cumulants,while CU-SVD-RE combines the essence of the first two algorithms.Specially,CU-SVD-RE gets the feature vector from the relationship between singular values of third-order cumulants.Being a cross-over studying field of watermarking and cryptography,the zero-watermark algorithms are robust without modifying the carrier.Numerical simulation obviously shows that,under geometric attacks,the performance of CU-SVD-RE and DC-RE algorithm are better and all three proposed algorithms are robust to various attacks,such as median filter,salt and pepper noise,and Gaussian low-pass filter attacks.

  20. The Eukaryotic Mismatch Recognition Complexes Track with the Replisome during DNA Synthesis.

    Directory of Open Access Journals (Sweden)

    Joanna E Haye

    2015-12-01

    Full Text Available During replication, mismatch repair proteins recognize and repair mispaired bases that escape the proofreading activity of DNA polymerase. In this work, we tested the model that the eukaryotic mismatch recognition complex tracks with the advancing replisome. Using yeast, we examined the dynamics during replication of the leading strand polymerase Polε using Pol2 and the eukaryotic mismatch recognition complex using Msh2, the invariant protein involved in mismatch recognition. Specifically, we synchronized cells and processed samples using chromatin immunoprecipitation combined with custom DNA tiling arrays (ChIP-chip. The Polε signal was not detectable in G1, but was observed at active origins and replicating DNA throughout S-phase. The Polε signal provided the resolution to track origin firing timing and efficiencies as well as replisome progression rates. By detecting Polε and Msh2 dynamics within the same strain, we established that the mismatch recognition complex binds origins and spreads to adjacent regions with the replisome. In mismatch repair defective PCNA mutants, we observed that Msh2 binds to regions of replicating DNA, but the distribution and dynamics are altered, suggesting that PCNA is not the sole determinant for the mismatch recognition complex association with replicating regions, but may influence the dynamics of movement. Using biochemical and genomic methods, we provide evidence that both MutS complexes are in the vicinity of the replisome to efficiently repair the entire spectrum of mutations during replication. Our data supports the model that the proximity of MutSα/β to the replisome for the efficient repair of the newly synthesized strand before chromatin reassembles.

  1. Atomistic understanding of the C·T mismatched DNA base pair tautomerization via the DPT: QM and QTAIM computational approaches.

    Science.gov (United States)

    Brovarets', Ol'ha O; Hovorun, Dmytro M

    2013-11-15

    It was established that the cytosine·thymine (C·T) mismatched DNA base pair with cis-oriented N1H glycosidic bonds has propeller-like structure (|N3C4C4N3| = 38.4°), which is stabilized by three specific intermolecular interactions-two antiparallel N4H…O4 (5.19 kcal mol(-1)) and N3H…N3 (6.33 kcal mol(-1)) H-bonds and a van der Waals (vdW) contact O2…O2 (0.32 kcal mol(-1)). The C·T base mispair is thermodynamically stable structure (ΔG(int) = -1.54 kcal mol(-1) ) and even slightly more stable than the A·T Watson-Crick DNA base pair (ΔG(int) = -1.43 kcal mol(-1)) at the room temperature. It was shown that the C·T ↔ C*·T* tautomerization via the double proton transfer (DPT) is assisted by the O2…O2 vdW contact along the entire range of the intrinsic reaction coordinate (IRC). The positive value of the Grunenberg's compliance constants (31.186, 30.265, and 22.166 Å/mdyn for the C·T, C*·T*, and TS(C·T ↔ C*·T*), respectively) proves that the O2…O2 vdW contact is a stabilizing interaction. Based on the sweeps of the H-bond energies, it was found that the N4H…O4/O4H…N4, and N3H…N3 H-bonds in the C·T and C*·T* base pairs are anticooperative and weaken each other, whereas the middle N3H…N3 H-bond and the O2…O2 vdW contact are cooperative and mutually reinforce each other. It was found that the tautomerization of the C·T base mispair through the DPT is concerted and asynchronous reaction that proceeds via the TS(C·T ↔ C*·T*) stabilized by the loosened N4-H-O4 covalent bridge, N3H…N3 H-bond (9.67 kcal mol(-1) ) and O2…O2 vdW contact (0.41 kcal mol(-1) ). The nine key points, describing the evolution of the C·T ↔ C*·T* tautomerization via the DPT, were detected and completely investigated along the IRC. The C*·T* mispair was revealed to be the dynamically unstable structure with a lifetime 2.13·× 10(-13) s. In this case, as for the A·T Watson-Crick DNA base pair, activates the mechanism of the quantum protection of the C

  2. Four-Dimensional Computerized Tomography (4D-CT) Reconstruction Based on the Similarity Measure of Spatial Adjacent Images

    Institute of Scientific and Technical Information of China (English)

    ZHANG Shu-xu; ZHOU Ling-hong; CHEN Guang-jie; LIN Sheng-qu; YE Yu-sheng; ZHANG Hai-nan

    2008-01-01

    Objective:To investigate the feasibility of a 4D-CT reconstruction method based on the similarity principle of spatial adjacent images and mutual information measure. Methods:A motor driven sinusoidal motion platform made in house was used to create one-dimensional periodical motion that was along the longitudinal axis of the CT couch. The amplitude of sinusoidal motion was set to an amplitude of ±1 cm. The period of the motion was adjustable and set to 3.5 s. Phantom objects of two eggs were placed in a Styrofoam block, which in turn were placed on the motion platform. These objects were used to simulate volumes of interest undergoing ideal periodic motion. CT data of static phantom were acquired using a multi-slice general electric (GE) LightSpeed 16-slice CT scanner in an axial mode. And the CT data of periodical motion phantom were acquired in an axial and cine-mode scan. A software program was developed by using VC++ and VTK software tools to resort the CT data and reconstruct the 4D-CT. Then all of the CT data with same phase were sorted by the program into the same series based on the similarity principle of spatial adjacent images and mutual information measure among them, and 3D reconstruction of different phase CT data were completed by using the software. Results:All of the CT data were sorted accurately into different series based on the similarity principle of spatial adjacent images and mutual information measures among them. Compared with the unsorted CT data, the motion artifacts in the 3D reconstruction of sorted CT data were reduced significantly, and all of the sorted CT series result in a 4D-CT that reflected the characteristic of the periodical motion phantom. Conclusion:Time-resolved 4D-CT reconstruction can be implemented with any general multi-slice CT scanners based on the similarity principle of spatial adjacent images and mutual information measure.The process of the 4D-CT data acquisition and reconstruction were not restricted to the

  3. A Fast Motion Parameters Estimation Method Based on Cross-Correlation of Adjacent Echoes for Wideband LFM Radars

    Directory of Open Access Journals (Sweden)

    Yi-Xiong Zhang

    2017-05-01

    Full Text Available In wideband radar systems, the performance of motion parameters estimation can significantly affect the performance of object detection and the quality of inverse synthetic aperture radar (ISAR imaging. Although the traditional motion parameters estimation methods can reduce the range migration (RM and Doppler frequency migration (DFM effects in ISAR imaging, the computational complexity is high. In this paper, we propose a new fast non-parameter-searching method for motion parameters estimation based on the cross-correlation of adjacent echoes (CCAE for wideband LFM signals. A cross-correlation operation is carried out for two adjacent echo signals, then the motion parameters can be calculated by estimating the frequency of the correlation result. The proposed CCAE method can be applied directly to the stretching system, which is commonly adopted in wideband radar systems. Simulation results demonstrate that the new method can achieve better estimation performances, with much lower computational cost, compared with existing methods. The experimental results on real radar datasets are also evaluated to verify the effectiveness and superiority of the proposed method compared to the state-of-the-art existing methods.

  4. Evaluation of spatial variability of soil arsenic adjacent to a disused cattle-dip site, using model-based geostatistics.

    Science.gov (United States)

    Niazi, Nabeel K; Bishop, Thomas F A; Singh, Balwant

    2011-12-15

    This study investigated the spatial variability of total and phosphate-extractable arsenic (As) concentrations in soil adjacent to a cattle-dip site, employing a linear mixed model-based geostatistical approach. The soil samples in the study area (n = 102 in 8.1 m(2)) were taken at the nodes of a 0.30 × 0.35 m grid. The results showed that total As concentration (0-0.2 m depth) and phosphate-extractable As concentration (at depths of 0-0.2, 0.2-0.4, and 0.4-0.6 m) in soil adjacent to the dip varied greatly. Both total and phosphate-extractable soil As concentrations significantly (p = 0.004-0.048) increased toward the cattle-dip. Using the linear mixed model, we suggest that 5 samples are sufficient to assess a dip site for soil (As) contamination (95% confidence interval of ±475.9 mg kg(-1)), but 15 samples (95% confidence interval of ±212.3 mg kg(-1)) is desirable baseline when the ultimate goal is to evaluate the effects of phytoremediation. Such guidelines on sampling requirements are crucial for the assessment of As contamination levels at other cattle-dip sites, and to determine the effect of phytoremediation on soil As.

  5. A Mismatch EndoNuclease Array-Based Methodology (MENA for Identifying Known SNPs or Novel Point Mutations

    Directory of Open Access Journals (Sweden)

    Josep M. Comeron

    2016-04-01

    Full Text Available Accurate and rapid identification or confirmation of single nucleotide polymorphisms (SNPs, point mutations and other human genomic variation facilitates understanding the genetic basis of disease. We have developed a new methodology (called MENA (Mismatch EndoNuclease Array pairing DNA mismatch endonuclease enzymology with tiling microarray hybridization in order to genotype both known point mutations (such as SNPs as well as identify previously undiscovered point mutations and small indels. We show that our assay can rapidly genotype known SNPs in a human genomic DNA sample with 99% accuracy, in addition to identifying novel point mutations and small indels with a false discovery rate as low as 10%. Our technology provides a platform for a variety of applications, including: (1 genotyping known SNPs as well as confirming newly discovered SNPs from whole genome sequencing analyses; (2 identifying novel point mutations and indels in any genomic region from any organism for which genome sequence information is available; and (3 screening panels of genes associated with particular diseases and disorders in patient samples to identify causative mutations. As a proof of principle for using MENA to discover novel mutations, we report identification of a novel allele of the beethoven (btv gene in Drosophila, which encodes a ciliary cytoplasmic dynein motor protein important for auditory mechanosensation.

  6. A Mismatch EndoNuclease Array-Based Methodology (MENA) for Identifying Known SNPs or Novel Point Mutations

    Science.gov (United States)

    Comeron, Josep M.; Reed, Jordan; Christie, Matthew; Jacobs, Julia S.; Dierdorff, Jason; Eberl, Daniel F.; Manak, J. Robert

    2016-01-01

    Accurate and rapid identification or confirmation of single nucleotide polymorphisms (SNPs), point mutations and other human genomic variation facilitates understanding the genetic basis of disease. We have developed a new methodology (called MENA (Mismatch EndoNuclease Array)) pairing DNA mismatch endonuclease enzymology with tiling microarray hybridization in order to genotype both known point mutations (such as SNPs) as well as identify previously undiscovered point mutations and small indels. We show that our assay can rapidly genotype known SNPs in a human genomic DNA sample with 99% accuracy, in addition to identifying novel point mutations and small indels with a false discovery rate as low as 10%. Our technology provides a platform for a variety of applications, including: (1) genotyping known SNPs as well as confirming newly discovered SNPs from whole genome sequencing analyses; (2) identifying novel point mutations and indels in any genomic region from any organism for which genome sequence information is available; and (3) screening panels of genes associated with particular diseases and disorders in patient samples to identify causative mutations. As a proof of principle for using MENA to discover novel mutations, we report identification of a novel allele of the beethoven (btv) gene in Drosophila, which encodes a ciliary cytoplasmic dynein motor protein important for auditory mechanosensation. PMID:27600073

  7. Un Algorithme de Gestion des Adjacences bas\\'e sur la Puissance du Signal

    CERN Document Server

    Ali, Husnain Mansoor; Naimi, Amina Meraihi; Veque, Veronique

    2008-01-01

    In this proposition, we present a link management technique for pro-active routing protocols for ad-hoc networks. This new mechanism is based on signal strength hence cross layer approach is used. The hysteresis mechanism provided by OLSR is improved upon by using signal strength in combination with the hello loss based hysteresis. The signal power is used to determine if the link-quality is improving or deteriorating while packet losses are handled through the hysteresis mechanism specified in OLSR RFC. This not only makes the link management more robust but also helps in anticipating link breakages thereby greatly improving the performance.

  8. MULTI-RESOLUTION MOTION ESTIMATION AND COMPENSATION BASED ON ADJACENT PREDICTION OF FRAME DIFFERENCE IN WAVELET DOMAIN

    Institute of Scientific and Technical Information of China (English)

    Tang Guowei; Gu Guochang

    2009-01-01

    Aiming at the higher bit-rate occupation of motion vector encoding and more time load of full-searching strategies,a multi-resolution motion estimation and compensation algorithm based on adjacent prediction of frame difference was proposed.Differential motion detection was employed to image sequences and proper threshold was adopted to identify the connected region.Then the motion region was extracted to carry out motion estimation and motion compensation on it.The experiment results show that the encoding efficiency of motion vector is promoted,the complexity of motion es timation is reduced and the quality of the reconstruction image at the same bit-rate as Multi-Reso lution Motion Estimation (MRME) is improved.

  9. $p$-th Clustering coefficients $C_{p}$ and Adjacent Matrix for Networks: Formulation based on String

    CERN Document Server

    Toyota, Norihito

    2009-01-01

    The phenomenon of six degrees of separation is an old but interesting problem. The considerations of the clustering coefficient reflecting triangular structures and its extension to square one to six degrees of separation have been made\\cite{Newm21}. Recently, Aoyama\\cite{Aoyama} has given some considerations to this problem in networks without loops, using a sort of general formalism, "string formalism". In this article, we describe relations between the string formulation proposed by Aoyama and an adjacent matrix. Thus we provided a reformulation of the string formulation proposed by \\cite{Aoyama} to analyze networks. According to it, we introduced a series of generalized $q$-$th$ clustering coefficients. The available rules between diagrams of graphs and formulae are also given based on the formulation. Next we apply the formulation to some subjects in order to mainly check consistency with former studies. By evaluating the clustering coefficient for typical networks studied well earlier, we confirm a vali...

  10. Matching/Mismatching in Web-Based Learning: A Perspective Based on Cognitive Styles and Physiological Factors

    Science.gov (United States)

    Huang, Yueh-Min; Hwang, Jan-Pan; Chen, Sherry Y.

    2016-01-01

    Cognitive styles have been regarded as a crucial factor that affects the effectiveness of web-based learning (WBL). Previous research indicated that educational settings that match with students' cognitive styles can enhance students' learning performance, which is, however, linked to their emotion. Various physiological signals can be applied to…

  11. Adjacency-Based Data Reordering Algorithm for Acceleration of Finite Element Computations

    Directory of Open Access Journals (Sweden)

    Min Zhou

    2010-01-01

    Full Text Available Effective use of the processor memory hierarchy is an important issue in high performance computing. In this work, a part level mesh topological traversal algorithm is used to define a reordering of both mesh vertices and regions that increases the spatial locality of data and improves overall cache utilization during on processor finite element calculations. Examples based on adaptively created unstructured meshes are considered to demonstrate the effectiveness of the procedure in cases where the load per processing core is varied but balanced (e.g., elements are equally distributed across cores for a given partition. In one example, the effect of the current ajacency-based data reordering is studied for different phases of an implicit analysis including element-data blocking, element-level computations, sparse-matrix filling and equation solution. These results are compared to a case where reordering is applied to mesh vertices only. The computations are performed on various supercomputers including IBM Blue Gene (BG/L and BG/P, Cray XT (XT3 and XT5 and Sun Constellation Cluster. It is observed that reordering improves the per-core performance by up to 24% on Blue Gene/L and up to 40% on Cray XT5. The CrayPat hardware performance tool is used to measure the number of cache misses across each level of the memory hierarchy. It is determined that the measured decrease in L1, L2 and L3 cache misses when data reordering is used, closely accounts for the observed decrease in the overall execution time.

  12. MutS recognition: Multiple mismatches and sequence context effects

    Indian Academy of Sciences (India)

    Amita Joshi; Basuthkar J Rao

    2001-12-01

    Escherichia coli MutS is a versatile repair protein that specifically recognizes not only various types of mismatches but also single stranded loops of up to 4 nucleotides in length. Specific binding, followed by the next step of tracking the DNA helix that locates hemi-methylated sites, is regulated by the conformational state of the protein as a function of ATP binding/hydrolysis. Here, we study how various molecular determinants of a heteroduplex regulate mismatch recognition by MutS, the critical first step of mismatch repair. Using classical DNase I footprinting assays, we demonstrate that the hierarchy of MutS binding to various types of mismatches is identical whether the mismatches are present singly or in multiples. Moreover, this unique hierarchy is indifferent both to the differential level of DNA helical flexibility and to the unpaired status of the mismatched bases in a heteroduplex. Surprisingly, multiple mismatches exhibit reduced affinity of binding to MutS, compared to that of a similar single mismatch. Such a reduction in the affinity might be due to sequence context effects, which we established more directly by studying two identical single mismatches in an altered sequence background. A mismatch, upon simply being flipped at the same location, elicits changes in MutS specific contacts, thereby underscoring the importance of sequence context in modulating MutS binding to mismatches.

  13. An integrated approach to risk-based remediation of a former bulk fuel storage facility adjacent a marine environment

    Energy Technology Data Exchange (ETDEWEB)

    Kemp, L.; Hers, I. [Golder Associates Ltd., Vancouver, BC (Canada)

    2006-07-01

    An integrated approach to risk-based remediation of a former bulk fuel storage facility adjacent to a marine environment was discussed. The presentation provided an introduction and illustration to the site location and history, located close to Skagway, Alaska and northwestern British Columbia. The site investigation and conceptual model were also presented. The remedial approach was also described with reference to a risk-based action approach, remedial objectives, soil vapour extraction (SVE)-bioventing, and air sparging-biosparging. The objectives were to minimize potential exposure to aquatic receptors by minimizing non-aqueous phase liquids (NAPL) mobility and dissolved transport of petroleum hydrocarbons. Groundwater modeling to assess the attenuation rate and to determine remedial targets was also discussed. Model validation and results of groundwater modeling as well as remediation system details and performance were then provided. It was determined that significant attenuation is occurring and that effective mass removal and concentrations have been decreasing over time. It was demonstrated that risk-based remedial goals and hydrogeology can change with land use/development. tabs., figs.

  14. Correlations between the Lomonosov Ridge, Marvin Spur and adjacent basins of the Arctic Ocean based on seismic data

    Science.gov (United States)

    Langinen, A. E.; Lebedeva-Ivanova, N. N.; Gee, D. G.; Zamansky, Yu. Ya.

    2009-07-01

    Seismic profiles across the Lomonosov Ridge, Marvin Spur and adjacent basins, acquired near the North Pole by the drifting ice-station NP-28, provide a reflection image of the upper parts of the Ridge that is readily correlatable with those acquired by the Alfred Wegner Institute closer to the Siberian margin. A prominent flat-lying composite reflection package is seen in most parts of the Ridge at a few hundred meters below the sea bottom. Underlying reflections are variable in intensity and also in dip. The base of this reflection package is often accompanied by a sharp increase in P-velocity and defines a major angular discontinuity, referred to here as the Lomonosov Unconformity. The Arctic Coring Expedition (ACEX) cored the first c. 430 m section on the Lomonosov Ridge near the North Pole, in 2004 defining the deeper water character of the Neogene and the shallower water Paleogene sediments. These boreholes penetrated the composite reflection package towards the base of the hole and identified sediments (our Unit III) of late Paleocene and early Eocene age. Campanian beds at the very base of the hole were thought to be representative of the units below the Lomonosov Unconformity, but the P-velocity data suggest that this is unlikely. Correlation of the lithologies along the top of the Lomonosov Ridge and to the Marvin Spur indicates that the Marvin Spur is a sliver of continental crust closely related to, and rifted off the Ridge. This narrow (50 km wide) linear basement high can be followed into, beneath and across the Makarov Basin, supporting the interpretation that this Basin is partly resting on thinned continental crust. In the Makarov Basin, the Paleogene succession is much thicker than on the Ridge. Thus, the condensed, shallow water succession (with hiati) was deposited on the Ridge during rapid Eocene to Miocene subsidence of the Basin. In the Amundsen Basin, adjacent to the Lomonosov Ridge, the sedimentary successions thicken towards the Canadian

  15. An analytical study of mismatched complementary media

    CERN Document Server

    Zhu, Lin; Ma, Hongru

    2016-01-01

    Complementary media (CM) interacting with arbitrarily situated obstacles are usually less discussed. In this paper, an analytical framework based on multiple scattering theory is established for analyzing such a mismatched case. As examples, CM-based devices, i.e., a superlens and superscatterer, are discussed. From an analysis, the cancellation mechanism of the mismatched CM is studied. In addition, numerical results are provided for illustration. Moreover, further study shows that such cancellation effects might rely on specific conditions. Actually, the conclusions are not restricted to any specific frequencies; they could be extended to many other areas including applications to active cloaking, antennas, and wireless power transfer.

  16. Population genetic diversity of the northern snakehead (Channa argus) in China based on the mitochondrial DNA control region and adjacent regions sequences.

    Science.gov (United States)

    Zhou, Aiguo; Zhuo, Xiaolei; Zou, Qing; Chen, Jintao; Zou, Jixing

    2015-06-01

    Genetic variation and population structure of northern snakehead (Channa argus) from eight locations in China were investigated using mitochondrial DNA control region and adjacent regions sequences. Sequence analysis showed that there were 105 haplotypes in 260 individuals, 48 unique haplotypes and 57 shared haplotypes, but no common haplotype shared by all populations. As a whole, the haplotype diversity was high (h=0.989), while the nucleotide diversity was low (π=0.00482). AMOVA analysis detected significant genetic differentiation among all eight populations (FST=0.328, p<0.01) and 66.17% of the total variance was resulted from intra-population differentiation. UPGMA analysis indicated that the eight populations could be divided into four major clusters, which was consistent with that the eight sampled locations were belonged to four isolated river systems. The neutrality and mismatch distribution tests suggested that the eight populations of C. argus in the sampling locations underwent recent population expansion. Among the eight populations, the Erhai Lake population may represent a unique genetic resource and therefore needs to be conserved.

  17. Mammalian mismatch repair

    DEFF Research Database (Denmark)

    Pena Diaz, Javier; Jiricny, Josef

    2012-01-01

    A considerable surge of interest in the mismatch repair (MMR) system has been brought about by the discovery of a link between Lynch syndrome, an inherited predisposition to cancer of the colon and other organs, and malfunction of this key DNA metabolic pathway. This review focuses on recent...... advances in our understanding of the molecular mechanisms of canonical MMR, which improves replication fidelity by removing misincorporated nucleotides from the nascent DNA strand. We also discuss the involvement of MMR proteins in two other processes: trinucleotide repeat expansion and antibody maturation...

  18. A Review for Model Plant Mismatch Measures in Process Monitoring

    Institute of Scientific and Technical Information of China (English)

    王洪; 谢磊; 宋执环

    2012-01-01

    Model is usually necessary for the design of a control loop. Due to simplification and unknown dynamics, model plant mismatch is inevitable in the control loop. In process monitoring, detection of mismatch and evaluation of its influences are demanded. In this paper several mismatch measures are presented based on different model descriptions. They are categorized into different groups from different perspectives and their potential in detection and diagnosis is evaluated. Two case studies on mixing process and distillation process demonstrate the efficacy of the framework of mismatch monitoring.

  19. Evidence for Base Substitutions and Repair of DNA Mismatch Damage Induced by Low Energy N+ Ion Beam Implantation in E. coli

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Ever since the low energy N+ ion beam has been accepted, the mutations of ionizing radiation are attributable mainly to avoidance of DNA damages repair. Evidences based on in vivo proof results are limited. Using the E.coli wild type and mutator strains, the mutant frequencies suggest that base substitutions in rpoB gene are induced by the N+ implantation. A highly conserved region is selected to get the direct evidence for base substitutions by sequence of the high fidelity PCR amplification products in mutants. Most of the mutants (90.9%, 40/44) have at least one base substitution in the amplification region. The evidences for CG to TA (55%, 22/40), AT to GC (20%, 8/40) and TA to CG (5%, 2/40) transitions are identified. The transversions are AT to TA (15%, 6/40) and GC to CG (5%, 2/40). It is suggested that DNA cytosine methylase might play an important role in mismatch repair of DNA damage induced by N+ implantation by analysis of the mutant frequencies of mutator strains.

  20. GPS-corrected and GIS-based remapping of the Kalahari Gemsbok National Park and the adjacent area in Botswana

    Directory of Open Access Journals (Sweden)

    J. du P. Bothma

    1993-09-01

    Full Text Available GPS-equipment was used to map the interior roads, major pans and the location of all windmills and solar-equipped boreholes in the Kalahari Gemsbok National Park and the adjacent areas of Botswana. The final map was generated with GIS-equipment, and supplies managers and planners with the first error-free map of the area. The major errors of previous maps are indicated.

  1. The Mismatch between Students' Mental Models of Acids/Bases and Their Sources and Their Teacher's Anticipations Thereof

    Science.gov (United States)

    Lin, Jing-Wen; Chiu, Mei-Hung

    2010-01-01

    The aim of this study is to compare the characteristics and sources of students' mental models of acids and bases with a teacher's anticipations and, based on this comparison, to explore some possible explanations why motivated students might fail to learn from a subject-knowledgeable chemistry teacher. The study involves a chemistry teacher and…

  2. Streptococcus mutans counts in plaque adjacent to orthodontic brackets bonded with resin-modified glass ionomer cement or resin-based composite

    Directory of Open Access Journals (Sweden)

    Solange Machado Mota

    2008-03-01

    Full Text Available This study investigated the number of Streptococcus mutans CFU (colony forming units in the saliva and plaque adjacent to orthodontic brackets bonded with a glass ionomer cement - GIC (Fuji Ortho or a resin-based composite - RC (Concise. Twenty male and female patients, aged 12 to 20 years, participated in the study. Saliva was collected before and after placement of appliances. Plaque was collected from areas adjacent to brackets and saliva was again collected on the 15th, 30th, and 45th day after placement. On the 30th day, 0.4% stannous fluoride gel was applied for 4 minutes. No significant modification in the number of Streptococcus mutans CFU in saliva was observed after placement of the fixed orthodontic appliances. On the 15th day, the percentage of Streptococcus mutans CFU in plaque was statistically lower in sites adjacent to GIC-bonded brackets (mean = 0.365 than in those adjacent to RC-bonded brackets (mean = 0.935. No evidence was found of a contribution of GIC to the reduction of CFU in plaque after the 15th day. Topical application of stannous fluoride gel on the 30th day reduced the number of CFU in saliva, but not in plaque. This study suggests that the antimicrobial activity of GIC occurs only in the initial phase and is not responsible for a long-term anticariogenic property.

  3. Mismatch base pairing of the mutagen 8-oxoguanine and its derivatives with adenine: A theoretical search for possible antimutagenic agents

    Science.gov (United States)

    Singh, A. K.; Mishra, P. C.

    Molecular geometries of 8-oxoguanine (8OG), those of its substituted derivatives with the substitutions CH2, CF2, CO, CNH, O, and S in place of the N7H7 group, adenine (A), and the base pairs of 8OG and its substituted derivatives with adenine were optimized using the RHF/6-31+G* and B3LYP/6-31+G* methods in gas phase. All the molecules and their hydrogen-bonded complexes were solvated in aqueous media employing the polarized continuum model (PCM) of the self-consistent reaction field (SCRF) theory using the RHF/6-31+G* and B3LYP/6-31+G* methods. The optimized geometrical parameters of the 8OG-A base pair at the RHF/6-31+G* and B3LYP/6-31+G* levels of theory agree satisfactorily with those of an oligonucleotide containing the base pair found from X-ray crystallography. The pattern of hydrogen bonding in the CF2- and O-substituted 8OG-A base pair is of Watson-Crick type and that in the unsubstituted and CH2-, CNH-, and S-substituted base pairs is of Hoogsteen type. In the CO-substituted base pair, the hydrogen bonding pattern is of neither Watson-Crick nor Hoogsteen type. The CF2-substitution appears to introduce steric hindrance for stacking of DNA bases. On the basis of these results, it appears that among all the substituted 8OG molecules considered here, the O-substituted derivative may be useful as an antimutagenic drug. It is, however, subject to experimental verification. Content:text/plain; charset="UTF-8"

  4. Technical aspects of typing for HLA-DP alleles using allele-specific DNA in vitro amplification and sequence-specific oligonucleotide probes. Detection of single base mismatches

    DEFF Research Database (Denmark)

    Fugger, L; Morling, N; Ryder, L P

    1990-01-01

    The polymerase chain reaction (PCR) is an effective method for in vitro DNA amplification which combined with probing with synthetic oligonucleotides can be used for, e.g., HLA-typing. We have studied the technical aspects of HLA-DP typing with the technique. DNA from mononuclear nucleated cells ...... mismatches may be detected in the PCR and typing for HLA-DP gene variants, which differ for only one base, may be performed.......The polymerase chain reaction (PCR) is an effective method for in vitro DNA amplification which combined with probing with synthetic oligonucleotides can be used for, e.g., HLA-typing. We have studied the technical aspects of HLA-DP typing with the technique. DNA from mononuclear nucleated cells...... was extracted with either a simple salting out method or phenol/chloroform. Both DNAs could be readily used for PCR. The MgC2 concentration of the PCR buffer and the annealing temperature of the thermal cycle of the PCR were the two most important variables. The MgCl2 concentration and the temperature must...

  5. The Mismatch between Students' Mental Models of Acids/Bases and their Sources and their Teacher's Anticipations thereof

    Science.gov (United States)

    Lin, Jing-Wen; Chiu, Mei-Hung

    2010-08-01

    The aim of this study is to compare the characteristics and sources of students' mental models of acids and bases with a teacher's anticipations and, based on this comparison, to explore some possible explanations why motivated students might fail to learn from a subject-knowledgeable chemistry teacher. The study involves a chemistry teacher and her 38 ninth graders and focuses on the mental models of three high achievers and three low achievers who were interviewed in depth. Four students' mental models of acid and base are identified. The mental models and sources of students' conceptions of acids and bases that influenced the high achievers are compared to those of the low achievers. We find that the teacher in the study made accurate anticipations of her students' mental models in the case of the high achievers but inaccurate anticipations of the low-achievers' mental models and the diverse sources influencing their mental models. In addition, the teacher incorrectly attributed the poor achievement of the low-achieving students to their intuition and underestimated the effects of her teaching on the achievement of these students. As a result, the teacher's instruction reinforced the low-achievers' incorrect mental models. Finally, the different approaches for teaching students with different achievements are emphasized according to the empirical data in this study.

  6. Treatment referral for sex offenders based on clinical judgment versus actuarial risk assessment: match and analysis of mismatch

    NARCIS (Netherlands)

    Smid, W.J.; Kamphuis, J.H.; Wever, E.C.; van Beek, D.

    2013-01-01

    The Risk Need Responsivity (RNR) principles (Andrews & Bonta, 2010) dictate that higher risk sex offenders should receive more intensive treatment. The present study investigates how clinically based treatment assignment relates to risk level in a sex offender sample from The Netherlands. Correlatio

  7. Potential for DNA-based identification of Great Lakes fauna: Match and mismatch between taxa inventories and DNA barcode libraries

    Science.gov (United States)

    DNA-based identification of mixed-organism samples offers the potential to greatly reduce the need for resource-intensive morphological identification, which would be of value both to biotic condition assessment and non-native species early-detection monitoring. However, the abi...

  8. Deformation Rates in the Snake River Plain and Adjacent Basin and Range Regions Based on GPS Measurements

    Science.gov (United States)

    Payne, S. J.; McCaffrey, R.; King, R. W.; Kattenhorn, S. A.

    2012-12-01

    We estimate horizontal velocities for 405 sites using Global Positioning System (GPS) phase data collected from 1994 to 2010 within the Northern Basin and Range Province, U.S.A. The velocities reveal a slowly-deforming region within the Snake River Plain in Idaho and Owyhee-Oregon Plateau in Oregon separated from the actively extending adjacent Basin and Range regions by shear. Our results show a NE-oriented extensional strain rate of 5.6 ± 0.7 nanostrain/yr in the Centennial Tectonic Belt and an ~E-oriented extensional strain rate of 3.5 ± 0.2 nanostrain/yr in the Great Basin. These extensional rates contrast with the very low strain rate within the 125 km x 650 km region of the Snake River Plain and Owyhee-Oregon Plateau which is not distinguishable from zero (-0.1 ± 0.4 x nanostrain/yr). Inversions of Snake River Plain velocities with dike-opening models indicate that rapid extension by dike intrusion in volcanic rift zones, as previously hypothesized, is not currently occurring. GPS data also disclose that rapid extension in the surrounding regions adjacent to the slowly-deforming region of the Snake River Plain drives shear between them. We estimate right-lateral shear with slip rates of 0.3-1.5 mm/yr along the northwestern boundary adjacent to the Centennial Tectonic Belt and left-lateral oblique extension with slip rates of 0.5-1.5 mm/yr along the southeastern boundary adjacent to the Intermountain Seismic Belt. The fastest lateral shearing evident in the GPS occurs near the Yellowstone Plateau where earthquakes with right-lateral strike-slip focal mechanisms are within a NE-trending zone of seismicity. The regional velocity gradients are best fit by nearby poles of rotation for the Centennial Tectonic Belt, Snake River Plain, Owyhee-Oregon Plateau, and eastern Oregon, indicating that clockwise rotation is not locally driven by Yellowstone hotspot volcanism, but instead by extension to the south across the Wasatch fault possibly due to gravitational

  9. How many tautomerization pathways connect Watson-Crick-like G*·T DNA base mispair and wobble mismatches?

    Science.gov (United States)

    Brovarets', Ol'ha O; Hovorun, Dmytro M

    2015-01-01

    In this study, we have theoretically demonstrated the intrinsic ability of the wobble G·T(w)/G*·T*(w)/G·T(w1)/G·T(w2) and Watson-Crick-like G*·T(WC) DNA base mispairs to interconvert into each other via the DPT tautomerization. We have established that among all these transitions, only one single G·T(w) ↔ G*·T(WC) pathway is eligible from a biological perspective. It involves short-lived intermediate - the G·T*(WC) base mispair - and is governed by the planar, highly stable, and zwitterionic [Formula: see text] transition state stabilized by the participation of the unique pattern of the five intermolecular O6(+)H⋯O4(-), O6(+)H⋯N3(-), N1(+)H⋯N3(-), N1(+)H⋯O2(-), and N2(+)H⋯O2(-) H-bonds. This non-dissociative G·T(w) ↔ G*·T(WC) tautomerization occurs without opening of the pair: Bases within mispair remain connected by 14 different patterns of the specific intermolecular interactions that successively change each other along the IRC. Novel kinetically controlled mechanism of the thermodynamically non-equilibrium spontaneous point GT/TG incorporation errors has been suggested. The mutagenic effect of the analogues of the nucleotide bases, in particular 5-bromouracil, can be attributed to the decreasing of the barrier of the acquisition by the wobble pair containing these compounds of the enzymatically competent Watson-Crick's geometry via the intrapair mutagenic tautomerization directly in the essentially hydrophobic recognition pocket of the replication DNA-polymerase machinery. Proposed approaches are able to explain experimental data, namely growth of the rate of the spontaneous point incorporation errors during DNA biosynthesis with increasing temperature.

  10. Final Environmental Assessment Construction and Operation of U.S. Special Operations Command South Headquarters Adjacent to Homestead Air Reserve Base, Homestead, Florida

    Science.gov (United States)

    2011-06-01

    level is above 60 dBA. In busy urban areas, noise levels are typically near 75 dBA, and can reach 85 dBA near airports and major freeways ( California ...Adjacent to the U.S. Air Reserve Base, Homestead, Florida. Purchase Order: 936618. California State Lands Commission, Monterey Bay National Marine...November 19, 2007. Taylor, W.K. 1998. Rockland Pinelands, pp 48 -50 in Florida Wildflowers in Their Natural Communities. University Press of Florida

  11. Heterogenous mismatch-repair status in colorectal cancer

    DEFF Research Database (Denmark)

    Joost, Patrick; Veurink, Nynke; Holck, Susanne;

    2014-01-01

    , heterogenous mismatch repair protein staining in order to delineate expression patterns and underlying mechanisms. METHODS: Heterogenous staining patterns that affected at least one of the mismatch repair proteins MLH1, PMS2, MSH2 and MSH6 were identified in 14 colorectal cancers. Based on alternative...... expression patterns macro-dissected and micro-dissected tumor areas were separately analyzed for microsatellite instability and MLH1 promoter methylation. RESULTS: Heterogenous retained/lost mismatch repair protein expression could be classified as intraglandular (within or in-between glandular formations....... CONCLUSIONS: Heterogenous mismatch repair status can be demonstrated in colorectal cancer. Though rare, attention to this phenomenon is recommended since it corresponds to differences in mismatch repair status that are relevant for correct classification. VIRTUAL SLIDES: The virtual slide(s) for this article...

  12. Design and analysis of mismatch probes for long oligonucleotide microarrays

    Energy Technology Data Exchange (ETDEWEB)

    Deng, Ye; He, Zhili; Van Nostrand, Joy D.; Zhou, Jizhong

    2008-08-15

    Nonspecific hybridization is currently a major concern with microarray technology. One of most effective approaches to estimating nonspecific hybridizations in oligonucleotide microarrays is the utilization of mismatch probes; however, this approach has not been used for longer oligonucleotide probes. Here, an oligonucleotide microarray was constructed to evaluate and optimize parameters for 50-mer mismatch probe design. A perfect match (PM) and 28 mismatch (MM) probes were designed for each of ten target genes selected from three microorganisms. The microarrays were hybridized with synthesized complementary oligonucleotide targets at different temperatures (e.g., 42, 45 and 50 C). In general, the probes with evenly distributed mismatches were more distinguishable than those with randomly distributed mismatches. MM probes with 3, 4 and 5 mismatched nucleotides were differentiated for 50-mer oligonucleotide probes hybridized at 50, 45 and 42 C, respectively. Based on the experimental data generated from this study, a modified positional dependent nearest neighbor (MPDNN) model was constructed to adjust the thermodynamic parameters of matched and mismatched dimer nucleotides in the microarray environment. The MM probes with four flexible positional mismatches were designed using the newly established MPDNN model and the experimental results demonstrated that the redesigned MM probes could yield more consistent hybridizations. Conclusions: This study provides guidance on the design of MM probes for long oligonucleotides (e.g., 50 mers). The novel MPDNN model has improved the consistency for long MM probes, and this modeling method can potentially be used for the prediction of oligonucleotide microarray hybridizations.

  13. Design and analysis of mismatch probes for long oligonucleotide microarrays

    Energy Technology Data Exchange (ETDEWEB)

    Deng, Ye; He, Zhili; Van Nostrand, Joy D.; Zhou, Jizhong

    2008-08-15

    Nonspecific hybridization is currently a major concern with microarray technology. One of most effective approaches to estimating nonspecific hybridizations in oligonucleotide microarrays is the utilization of mismatch probes; however, this approach has not been used for longer oligonucleotide probes. Here, an oligonucleotide microarray was constructed to evaluate and optimize parameters for 50-mer mismatch probe design. A perfect match (PM) and 28 mismatch (MM) probes were designed for each of ten target genes selected from three microorganisms. The microarrays were hybridized with synthesized complementary oligonucleotide targets at different temperatures (e.g., 42, 45 and 50 C). In general, the probes with evenly distributed mismatches were more distinguishable than those with randomly distributed mismatches. MM probes with 3, 4 and 5 mismatched nucleotides were differentiated for 50-mer oligonucleotide probes hybridized at 50, 45 and 42 C, respectively. Based on the experimental data generated from this study, a modified positional dependent nearest neighbor (MPDNN) model was constructed to adjust the thermodynamic parameters of matched and mismatched dimer nucleotides in the microarray environment. The MM probes with four flexible positional mismatches were designed using the newly established MPDNN model and the experimental results demonstrated that the redesigned MM probes could yield more consistent hybridizations. Conclusions: This study provides guidance on the design of MM probes for long oligonucleotides (e.g., 50 mers). The novel MPDNN model has improved the consistency for long MM probes, and this modeling method can potentially be used for the prediction of oligonucleotide microarray hybridizations.

  14. Metrology of ground-based satellite validation: co-location mismatch and smoothing issues of total ozone comparisons

    Directory of Open Access Journals (Sweden)

    T. Verhoelst

    2015-12-01

    Full Text Available Comparisons with ground-based correlative measurements constitute a key component in the validation of satellite data on atmospheric composition. The error budget of these comparisons contains not only the measurement errors but also several terms related to differences in sampling and smoothing of the inhomogeneous and variable atmospheric field. A versatile system for Observing System Simulation Experiments (OSSEs, named OSSSMOSE, is used here to quantify these terms. Based on the application of pragmatic observation operators onto high-resolution atmospheric fields, it allows a simulation of each individual measurement, and consequently, also of the differences to be expected from spatial and temporal field variations between both measurements making up a comparison pair. As a topical case study, the system is used to evaluate the error budget of total ozone column (TOC comparisons between GOME-type direct fitting (GODFITv3 satellite retrievals from GOME/ERS2, SCIAMACHY/Envisat, and GOME-2/MetOp-A, and ground-based direct-sun and zenith–sky reference measurements such as those from Dobsons, Brewers, and zenith-scattered light (ZSL-DOAS instruments, respectively. In particular, the focus is placed on the GODFITv3 reprocessed GOME-2A data record vs. the ground-based instruments contributing to the Network for the Detection of Atmospheric Composition Change (NDACC. The simulations are found to reproduce the actual measurements almost to within the measurement uncertainties, confirming that the OSSE approach and its technical implementation are appropriate. This work reveals that many features of the comparison spread and median difference can be understood as due to metrological differences, even when using strict co-location criteria. In particular, sampling difference errors exceed measurement uncertainties regularly at most mid- and high-latitude stations, with values up to 10 % and more in extreme cases. Smoothing difference errors only

  15. Metrology of ground-based satellite validation: co-location mismatch and smoothing issues of total ozone comparisons

    Science.gov (United States)

    Verhoelst, T.; Granville, J.; Hendrick, F.; Köhler, U.; Lerot, C.; Pommereau, J.-P.; Redondas, A.; Van Roozendael, M.; Lambert, J.-C.

    2015-12-01

    Comparisons with ground-based correlative measurements constitute a key component in the validation of satellite data on atmospheric composition. The error budget of these comparisons contains not only the measurement errors but also several terms related to differences in sampling and smoothing of the inhomogeneous and variable atmospheric field. A versatile system for Observing System Simulation Experiments (OSSEs), named OSSSMOSE, is used here to quantify these terms. Based on the application of pragmatic observation operators onto high-resolution atmospheric fields, it allows a simulation of each individual measurement, and consequently, also of the differences to be expected from spatial and temporal field variations between both measurements making up a comparison pair. As a topical case study, the system is used to evaluate the error budget of total ozone column (TOC) comparisons between GOME-type direct fitting (GODFITv3) satellite retrievals from GOME/ERS2, SCIAMACHY/Envisat, and GOME-2/MetOp-A, and ground-based direct-sun and zenith-sky reference measurements such as those from Dobsons, Brewers, and zenith-scattered light (ZSL-)DOAS instruments, respectively. In particular, the focus is placed on the GODFITv3 reprocessed GOME-2A data record vs. the ground-based instruments contributing to the Network for the Detection of Atmospheric Composition Change (NDACC). The simulations are found to reproduce the actual measurements almost to within the measurement uncertainties, confirming that the OSSE approach and its technical implementation are appropriate. This work reveals that many features of the comparison spread and median difference can be understood as due to metrological differences, even when using strict co-location criteria. In particular, sampling difference errors exceed measurement uncertainties regularly at most mid- and high-latitude stations, with values up to 10 % and more in extreme cases. Smoothing difference errors only play a role in the

  16. Metrology of ground-based satellite validation: co-location mismatch and smoothing issues of total ozone comparisons

    Directory of Open Access Journals (Sweden)

    T. Verhoelst

    2015-08-01

    Full Text Available Comparisons with ground-based correlative measurements constitute a key component in the validation of satellite data on atmospheric composition. The error budget of these comparisons contains not only the measurement uncertainties but also several terms related to differences in sampling and smoothing of the inhomogeneous and variable atmospheric field. A versatile system for Observing System Simulation Experiments (OSSEs, named OSSSMOSE, is used here to quantify these terms. Based on the application of pragmatic observation operators onto high-resolution atmospheric fields, it allows a simulation of each individual measurement, and consequently also of the differences to be expected from spatial and temporal field variations between both measurements making up a comparison pair. As a topical case study, the system is used to evaluate the error budget of total ozone column (TOC comparisons between on the one hand GOME-type direct fitting (GODFITv3 satellite retrievals from GOME/ERS2, SCIAMACHY/Envisat, and GOME-2/MetOp-A, and on the other hand direct-sun and zenith-sky reference measurements such as from Dobsons, Brewers, and zenith scattered light (ZSL-DOAS instruments respectively. In particular, the focus is placed on the GODFITv3 reprocessed GOME-2A data record vs. the ground-based instruments contributing to the Network for the Detection of Atmospheric Composition Change (NDACC. The simulations are found to reproduce the actual measurements almost to within the measurement uncertainties, confirming that the OSSE approach and its technical implementation are appropriate. This work reveals that many features of the comparison spread and median difference can be understood as due to metrological differences, even when using strict co-location criteria. In particular, sampling difference errors exceed measurement uncertainties regularly at most mid- and high-latitude stations, with values up to 10 % and more in extreme cases. Smoothing

  17. Adjacent segment disease.

    Science.gov (United States)

    Virk, Sohrab S; Niedermeier, Steven; Yu, Elizabeth; Khan, Safdar N

    2014-08-01

    EDUCATIONAL OBJECTIVES As a result of reading this article, physicians should be able to: 1. Understand the forces that predispose adjacent cervical segments to degeneration. 2. Understand the challenges of radiographic evaluation in the diagnosis of cervical and lumbar adjacent segment disease. 3. Describe the changes in biomechanical forces applied to adjacent segments of lumbar vertebrae with fusion. 4. Know the risk factors for adjacent segment disease in spinal fusion. Adjacent segment disease (ASD) is a broad term encompassing many complications of spinal fusion, including listhesis, instability, herniated nucleus pulposus, stenosis, hypertrophic facet arthritis, scoliosis, and vertebral compression fracture. The area of the cervical spine where most fusions occur (C3-C7) is adjacent to a highly mobile upper cervical region, and this contributes to the biomechanical stress put on the adjacent cervical segments postfusion. Studies have shown that after fusion surgery, there is increased load on adjacent segments. Definitive treatment of ASD is a topic of continuing research, but in general, treatment choices are dictated by patient age and degree of debilitation. Investigators have also studied the risk factors associated with spinal fusion that may predispose certain patients to ASD postfusion, and these data are invaluable for properly counseling patients considering spinal fusion surgery. Biomechanical studies have confirmed the added stress on adjacent segments in the cervical and lumbar spine. The diagnosis of cervical ASD is complicated given the imprecise correlation of radiographic and clinical findings. Although radiological and clinical diagnoses do not always correlate, radiographs and clinical examination dictate how a patient with prolonged pain is treated. Options for both cervical and lumbar spine ASD include fusion and/or decompression. Current studies are encouraging regarding the adoption of arthroplasty in spinal surgery, but more long

  18. Mechanisms and functions of DNA mismatch repair

    Institute of Scientific and Technical Information of China (English)

    Guo MinLi

    2008-01-01

    DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. The specificity of MMR is primarily for base-base mismatches and insertion/deletion mispairs generated dur-ing DNA replication and recombination. MMR also suppresses homeologous recombination and was recently shown to play a role in DNA damage signaling in eukaryotic cells. Escherichia coli MutS and MutL and their eukaryotic homo-logs, MutSα and MutLα, respectively, are key players in MMR-associated genome maintenance. Many other protein components that participate in various DNA metabolic pathways, such as PCNA and RPA, are also essential for MMR. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including he-reditary non-polyposis colorectal cancer, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.

  19. Robust Control of Urban Industrial Water Mismatching Uncertain System

    Directory of Open Access Journals (Sweden)

    LI Kebai

    2013-02-01

    Full Text Available Urban industrial water system parameter fluctuation producing uncertainty may not occur in a control input channel, can be applied mismatching uncertain system to describe. Based on Lyapunov direct method and linear matrix inequality, design the urban industrial water mismatching uncertain system feedback stabilization robust control scheme. Avoid the defects that the feedback stabilization control method based on the matrix Riccati equation need to preset equation parameters, easier to solve and can reduce the conservative.

  20. Effects of Mismatched Parameter on Chaotic Synchronization

    Institute of Scientific and Technical Information of China (English)

    PENGJiang-hua; FANGJin-qing

    2003-01-01

    Chaos-based security communication has become one of the most interesting hot subjects for research of chaotic theory in real world since. In recent years, secure communication via synchronized chaos has been intensely studied. However, in practical application it is difficult to construct two complete identical chaotic systems since there are many reasons to induce parameter mismatch between two systems (response system and drive system).

  1. Topologically clustering: a method for discarding mismatches

    Science.gov (United States)

    Wang, Yongtao; Zhang, Dazhi; Gao, Chenqiang; Tian, Jinwen

    2007-11-01

    Wide baseline stereo correspondence has become a challenging and attractive problem in computer vision and its related applications. Getting high correct ratio initial matches is a very important step of general wide baseline stereo correspondence algorithm. Ferrari et al. suggested a voting scheme called topological filter in [3] to discard mismatches from initial matches, but they didn't give theoretical analysis of their method. Furthermore, the parameter of their scheme was uncertain. In this paper, we improved Ferraris' method based on our theoretical analysis, and presented a novel scheme called topologically clustering to discard mismatches. The proposed method has been tested using many famous wide baseline image pairs and the experimental results showed that the developed method can efficiently extract high correct ratio matches from low correct ratio initial matches for wide baseline image pairs.

  2. 基于相邻像素结构的信息隐藏算法%An Extended Structured Steganography Based on Adjacency Pixel

    Institute of Scientific and Technical Information of China (English)

    唐明伟; 宋文

    2012-01-01

    An extened structured steganography based on adjacency pixel (ESSA) was proposed by analyzing the SPA algorithm and SIHA algorithm. ESSA can be used to analyze some properties of the image fixel pairs. Based on the properties, a monotonous sequence of restoration was found. The sequence can keep the statistic properties of the pair unchanged. The experiment results show that the method can resist the attack of SPA and its performance is better than that of others in the efficiency and hiding capacity of information hiding.%通过对SPA方法和SIHA算法的分析,提出了一种扩展结构化的LSB信息隐藏算法(an extened structured steganography based on adjacency pixel,ESSA).通过分析图像相邻像素结构体,找到相似的相邻像素结构体,根据这些相邻像素结构体的统计性质变化来隐藏信息.实验证明:该算法不仅能够有效的抵抗SPA统计分析方法,而且实现简单、计算量小,隐藏优于其他算法.

  3. Elastic-plastic fracture mechanics of strength-mismatching

    Energy Technology Data Exchange (ETDEWEB)

    Parks, D.M.; Ganti, S.; McClintock, F.A. [Massachusetts Institute of Technology, Cambridge, MA (United States)

    1996-12-31

    Approximate solutions to stress-fields are provided for a strength-mismatched interface crack in small-scale yielding (SSY) for non-hardening and low hardening materials. Variations of local deformation intensities, characterized by a J-type contour integral, are proposed. The softer material experiences a higher deformation intensity level, J{sub S}, while the harder material sees a much lower deformation intensity level, J{sub H}, compared to that obtained from the applied J near the respective homogeneous crack-tips. For a low hardening material, the stress fields are obtained by scaling from an elastic/perfectly-plastic problem, based on an effective mismatch, M{sub eff}, which is a function of mismatch, M, and the hardening exponent, n. Triaxial stress build-up is discussed quantitatively in terms of M. The influence of strength-mismatch on cleavage fracture is discussed using Weibull statistics.

  4. Optimality of the Width-$w$ Non-adjacent Form: General Characterisation and the Case of Imaginary Quadratic Bases

    CERN Document Server

    Heuberger, Clemens

    2011-01-01

    Efficient scalar multiplication in Abelian groups (which is an important operation in public key cryptography) can be performed using digital expansions. Apart from rational integer bases (double-and-add algorithm), imaginary quadratic integer bases are of interest for elliptic curve cryptography, because the Frobenius endomorphism fulfils a quadratic equation. One strategy for improving the efficiency is to increase the digit set (at the prize of additional precomputations). A common choice is the width\

  5. Structural basis of transcription: Mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA

    OpenAIRE

    Sydow, J.; Brueckner, F.; Cheung, A; Damsma, G.; Dengl, S.; Lehmann, E.; Vassylyev, D.; Cramer, P

    2009-01-01

    We show that RNA polymerase (Pol) II prevents erroneous transcription in vitro with different strategies that depend on the type of DNA,RNA base mismatch. Certain mismatches are efficiently formed but impair RNA extension. Other mismatches allow for RNA extension but are inefficiently formed and efficiently proofread by RNA cleavage. X-ray analysis reveals that a T,U mismatch impairs RNA extension by forming a wobble base pair at the Pol II active center that dissociates the catalytic metal i...

  6. Climatic Factors Drive Population Divergence and Demography: Insights Based on the Phylogeography of a Riparian Plant Species Endemic to the Hengduan Mountains and Adjacent Regions.

    Science.gov (United States)

    Wang, Zhi-Wei; Chen, Shao-Tian; Nie, Ze-Long; Zhang, Jian-Wen; Zhou, Zhuo; Deng, Tao; Sun, Hang

    2015-01-01

    Quaternary climatic factors have played a significant role in population divergence and demography. Here we investigated the phylogeography of Osteomeles schwerinae, a dominant riparian plant species of the hot/warm-dry river valleys of the Hengduan Mountains (HDM), Qinling Mountains (QLM) and Yunnan-Guizhou Plateau (YGP). Three chloroplast DNA (cpDNA) regions (trnD-trnT, psbD-trnT, petL-psbE), one single copy nuclear gene (glyceraldehyde 3-phosphate dehydrogenase; G3pdh), and climatic data during the Last Interglacial (LIG; c. 120-140 ka), Last Glacial Maximum (LGM; c. 21 ka), and Current (c. 1950-2000) periods were used in this study. Six cpDNA haplotypes and 15 nuclear DNA (nDNA) haplotypes were identified in the 40 populations of O. schwerinae. Spatial Analysis of Molecular Variance, median-joining networks, and Bayesian phylogenetic trees based on the cpDNA and nDNA datasets, all suggested population divergence between the QLM and HDM-YGP regions. Our climatic analysis identified significant heterogeneity of the climatic factors in the QLM and HDM-YGP regions during the aforementioned three periods. The divergence times based on cpDNA and nDNA haplotypes were estimated to be 466.4-159.4 ka and 315.8-160.3 ka, respectively, which coincide with the time of the weakening of the Asian monsoons in these regions. In addition, unimodal pairwise mismatch distribution curves, expansion times, and Ecological Niche Modeling suggested a history of population expansion (rather than contraction) during the last glaciation. Interestingly, the expansion times were found being well consistent with the intensification of the Asian monsoons during this period. We inferred that the divergence between the two main lineages is probably caused by disruption of more continuous distribution because of weakening of monsoons/less precipitation, whilst subsequent intensification of the Asian monsoons during the last glaciation facilitated the expansion of O. schwerinae populations.

  7. Occurrence and severity of enamel decalcification adjacent to bracket bases and sub-bracket lesions during orthodontic treatment with two different lingual appliances

    Science.gov (United States)

    Klang, Elisabeth; Helms, Hans-Joachim; Wiechmann, Dirk

    2016-01-01

    Summary Background: Using lingual enamel surfaces for bracket placement not only has esthetic advantages, but may also be suitable in terms of reducing frequencies of enamel decalcifications. Objective: To test the null-hypothesis that there is no significant difference in enamel decalcification or cavitation incidence adjacent to and beneath bracket bases between two lingual multi-bracket (MB) appliances that are different in terms of design, material composition, and manufacturing technology (group A: WIN, DW-LingualSystems; group B: Incognito, 3M-Unitek), taking into account patient- and treatment-related variables on white spot lesion (WSL) formation. Methods: Standardized, digital, top-view photographs of 630 consecutive subjects (16214 teeth; n Incognito = 237/6076 teeth; n WIN = 393/10138 teeth; mean age: 17.47±7.8; m/f 43.2/56.8%) with completed lingual MB treatment of the upper and lower permanent teeth 1–7 were screened for decalcification or cavitation adjacent to and beneath the bracket bases before and after treatment, scored from 0 to 7. Non-parametric ANOVA was used for main effects ‘appliance type’, ‘gender’, ‘treatment complexity’, ‘grouped age’ (≤16/>16 years), and ‘treatment duration’ as covariable, at an α-level of 5%. Results: About 2.57% [5.94%] of all teeth in group A [B] developed decalcifications. Subject-related incidence was 9.59% [16.17%] for upper incisors in group A [B], and 12.98% [25.74%] for all teeth 16–46. There were significant effects by gender, age, and treatment duration. Conclusion: The null-hypothesis was rejected: sub-bracket lesions were significantly less frequent in group A, while frequencies of WSL adjacent to brackets were not significantly affected by appliance type. In view of the overall low incidences of lingual post-orthodontic white-spot lesions, the use of lingual appliances is advocated as a valid strategy for a reduction of enamel decalcifications during orthodontic treatment. PMID

  8. $p$-th Clustering coefficients and $q$-$th$ degrees of separation based on String-Adjacent Formulation

    CERN Document Server

    Toyota, Norihito

    2010-01-01

    The phenomenon of six degrees of separation is an old but attractive subject. The deep understanding has been uncovered yet, especially how closed paths included in a network affect six degrees of separation are an important subject left yet. For it, some researches have been made\\cite{Newm21}, \\cite{Aoyama}. Recently we have develop a formalism \\cite{Toyota3},\\cite{Toyota4} to explore the subject based on the string formalism developed by Aoyama\\cite{Aoyama}. The formalism can systematically investigate the effect of closed paths, especially generalized clustering coefficient $C_{(p)}$ introduced in \\cite{Toyota4}, on six degrees of separation. In this article, we analyze general $q$-th degrees of separation by using the formalism developed by us. So we find that the scale free network with exponent $\\gamma=3$ just display six degrees of separation. Furthermore we drive a phenomenological relation between the separation number $q$ and $C_{(p)}$ that has crucial information on circle structures in networks.

  9. Debuncher Energy Mismatch

    Energy Technology Data Exchange (ETDEWEB)

    McGinnis, Dave; /Fermilab

    2000-01-25

    During the December 1999 startup of antiproton stacking, a quick measurement of the Debuncher momentum aperture was made. The measurement was done by turning off and de-tuning the Debuncher bunch rotation cavities and observing the Debuncher 75 MHz longitudinal schottky signal of the circulating antiprotons as shown in Figure 1. The frequency at the center of the plot corresponds to the rotation frequency of the Debuncher RF cavities. (The schottky signal and the bunch rotation frequency occur at the 127th and 90th harmonics of the revolution frequency, respectively.) Figure 1 shows that the Debuncher bunch rotation energy is offset from the middle of the Debuncher momentum aperture by about 0.7% (57 MeV). The measured value of momentum aperture using the width of the base of the signal shown in Figure 1 ({eta} = 0.006 ) is 3.9% (346 MeV). This is close to the design value of 4%, so the offset is probably not due to any asymmetric momentum aperture restrictions.

  10. Bioimaging of geographically adjacent proteins in a single cell by quantum dot-based fluorescent resonance energy transfer.

    Science.gov (United States)

    Kang, Won Jun; Ko, Mee Hyang; Lee, Dong Soo; Kim, Soonhag

    2009-12-01

    Thousands of proteins are simultaneously involved in the maintenance of a single cancer cell. Fluorescent resonance energy transfer (FRET) is one of the most general techniques for imaging biologically interacting molecules in a cell. Here, we applied FRET to image the co-localization of two proteins that do not interact biologically (nucleolin and integrin α(v) β(3),) both of which are highly expressed in the plasma membrane of cancer cells. AS1411 aptamer, which targets nucleolin, was labeled by Cy3 (Cy3-AS1411) and arginine-glycine-aspartic acid (RGD) peptide, which targets integrin α(v) β(3) , was conjugated with quantum dot (525 nm, Qd) Qd arginine-glycine-aspartic acid (Qd-RGD). FRET activities between Cy3-AS1411 and Qd-RGD were measured in HeLa cells, a human cervical cancer cell line. FRET phenomena between Qd and Cy3 showed good compatibility according to proximity. The fluorescence signature using Qd-RGD and Cy3-AS1411 showed that nucleolin and integrin α(v) β(3) proteins were highly expressed in HeLa cells. Co-incubation of Qd-RGD and Cy3-AS1411 in a single HeLa cell demonstrated that the fluorescence overlay by FRET was quantitatively and geographically quite different from that of individual confocal images. These results suggest that Qd-based FRET analysis can provide information on geographical co-localization of proteins in naïve cells, which is very important for determining the molecular and cellular functions of genes involved in cancers and other clinical diseases.

  11. Prevalence of adjacent segment disc degeneration in patients undergoing anterior cervical discectomy and fusion based on pre-operative MRI findings.

    Science.gov (United States)

    Lundine, Kristopher M; Davis, Gavin; Rogers, Myron; Staples, Margaret; Quan, Gerald

    2014-01-01

    Anterior cervical discectomy and fusion (ACDF) is a widely accepted surgical treatment for symptomatic cervical spondylosis. Some patients develop symptomatic adjacent segment degeneration, occasionally requiring further treatment. The cause and prevalence of adjacent segment degeneration and disease is unclear at present. Proponents for motion preserving surgery such as disc arthroplasty argue that this technique may decrease the "strain" on adjacent discs and thus decrease the incidence of symptomatic adjacent segment degeneration. The purpose of this study was to assess the pre-operative prevalence of adjacent segment degeneration in patients undergoing ACDF. A database review of three surgeons' practice was carried out to identify patients who had undergone a one- or two-level ACDF for degenerative disc disease. Patients were excluded if they were operated on for recent trauma, had an inflammatory arthropathy (for example, rheumatoid arthritis), or had previous spine surgery. The pre-operative MRI of each patient was reviewed and graded using a standardised methodology. One hundred and six patient MRI studies were reviewed. All patients showed some evidence of intervertebral disc degeneration adjacent to the planned operative segment(s). Increased severity of disc degeneration was associated with increased age and operative level, but was not associated with sagittal alignment. Disc degeneration was more common at levels adjacent to the surgical level than at non-adjacent segments, and was more severe at the superior adjacent level compared with the inferior adjacent level. These findings support the theory that adjacent segment degeneration following ACDF is due in part to the natural history of cervical spondylosis.

  12. On String Matching with Mismatches

    Directory of Open Access Journals (Sweden)

    Marius Nicolae

    2015-05-01

    Full Text Available In this paper, we consider several variants of the pattern matching with mismatches problem. In particular, given a text \\(T=t_1 t_2\\cdots t_n\\ and a pattern \\(P=p_1p_2\\cdots p_m\\, we investigate the following problems: (1 pattern matching with mismatches: for every \\(i, 1\\leq i \\leq n-m+1\\ output, the distance between \\(P\\ and \\(t_i t_{i+1}\\cdots t_{i+m-1}\\; and (2 pattern matching with \\(k\\ mismatches: output those positions \\(i\\ where the distance between \\(P\\ and \\(t_i t_{i+1}\\cdots t_{i+m-1}\\ is less than a given threshold \\(k\\. The distance metric used is the Hamming distance. We present some novel algorithms and techniques for solving these problems. We offer deterministic, randomized and approximation algorithms. We consider variants of these problems where there could be wild cards in either the text or the pattern or both. We also present an experimental evaluation of these algorithms. The source code is available at http://www.engr.uconn.edu/\\(\\sim\\man09004/kmis.zip.

  13. Mismatch estimation for parallel time-interleaved sampling system based on subspace projection%基于子空间投影的并行交替采样系统误差估计

    Institute of Scientific and Technical Information of China (English)

    马仑; 廖桂生; 卢丹

    2012-01-01

    并行交替采样技术可以有效解决单片模数转换器( analog-to-digital converter,ADC)转换速率与量化精度间的矛盾,但是多通道问的失配误差将严重降低系统性能.提出了一种基于子空间投影技术的系统误差估计方法,利用多通道时延对应的频域线性相位矢量与噪声子空间的正交特性实现增益误差以及时基误差的精确估计.该方法迭代次数少,估计精度较高,对噪声以及偏置误差稳健,并且可以同时完成信号重构.仿真数据的处理结果验证了该方法的有效性.%The parallel time-interleaved sampling system can avoid the conflict between sampling race and quantization precision of a single-chip analog-to-digital converter (ADC). However, the multi-channel mismatch may degrade the performance of the system greatly. A novel multi-channel sampling system mismatch estimation method based on suhspace projection technique is presented. The method, which carries out timing and gain mismatch estimation simultaneously by exploiting the properties of the phase differences caused by the time interleaved array in frequency domain, is robust to residual offset error and noise. The effectiveness of the proposed approach is verified by simulated data.

  14. A Compression Method for ECG Based on DCT of Difference between Two Adjacent Frames%帧间差值的DCT压缩ECG数据的方法

    Institute of Scientific and Technical Information of China (English)

    王培康; 费小英

    2000-01-01

    心电图(ECG)信号具有准周期性,各个心动周期(称其为帧)的ECG波形极为相似,将相邻两帧的ECG波形数据相减,得到差值数据的波形比原始ECG波形平坦、数据值小,差值数据的DCT有效分量更为集中在低频段,且这些分量的幅度较低,由此,可以得到更高的数据压缩比。因此本文提出了一种利用ECG帧间差值代替原始ECG信号进行DCT变换,并用双码长编码方法对DCT分量进行编码的数据压缩方法。用该方法得到的重构ECG波形具有良好的保真度。%Since most of the DCT coefficients of an initial ECG signal are spread in low frequency,so is the energy of the signal, we can get a higher compression ratio (CR) by distributing DCT coefficients in a smaller region of low frequency and by degrading the amplitude of main DCT coefficients. ECG is a quasi-periodic signal with strong correlation between adjacent frames, so the difference sequence between them is more smooth and has lower amplitudes. Based on this property, a method of ECG data compression via DCT is presented in this paper, and it replaces the DCT coefficients of the original signal with the DCT coefficients of difference between two adjacent frames of the original signal and the DCT coefficients are encoded into two kinds of codes with different lengths. The quality of the reconstructed signal got by this way is high.

  15. Mismatch-mediated error prone repair at the immunoglobulin genes.

    Science.gov (United States)

    Chahwan, Richard; Edelmann, Winfried; Scharff, Matthew D; Roa, Sergio

    2011-12-01

    The generation of effective antibodies depends upon somatic hypermutation (SHM) and class-switch recombination (CSR) of antibody genes by activation induced cytidine deaminase (AID) and the subsequent recruitment of error prone base excision and mismatch repair. While AID initiates and is required for SHM, more than half of the base changes that accumulate in V regions are not due to the direct deamination of dC to dU by AID, but rather arise through the recruitment of the mismatch repair complex (MMR) to the U:G mismatch created by AID and the subsequent perversion of mismatch repair from a high fidelity process to one that is very error prone. In addition, the generation of double-strand breaks (DSBs) is essential during CSR, and the resolution of AID-generated mismatches by MMR to promote such DSBs is critical for the efficiency of the process. While a great deal has been learned about how AID and MMR cause hypermutations and DSBs, it is still unclear how the error prone aspect of these processes is largely restricted to antibody genes. The use of knockout models and mice expressing mismatch repair proteins with separation-of-function point mutations have been decisive in gaining a better understanding of the roles of each of the major MMR proteins and providing further insight into how mutation and repair are coordinated. Here, we review the cascade of MMR factors and repair signals that are diverted from their canonical error free role and hijacked by B cells to promote genetic diversification of the Ig locus. This error prone process involves AID as the inducer of enzymatically-mediated DNA mismatches, and a plethora of downstream MMR factors acting as sensors, adaptors and effectors of a complex and tightly regulated process from much of which is not yet well understood.

  16. Native mass spectrometry provides direct evidence for DNA mismatch-induced regulation of asymmetric nucleotide binding in mismatch repair protein MutS

    NARCIS (Netherlands)

    M.C. Monti; S.X. Cohen (Serge); A. Fish (Alexander); H.H.K. Winterwerp (Herrie); A. Barendregt (Arjan); P. Friedhoff (Peter); A. Perrakis (Anastassis); A.J.R. Heck (Albert); T.K. Sixma (Titia); R.H.H. van den Heuvel (Robert); J.H.G. Lebbink (Joyce)

    2011-01-01

    textabstractThe DNA mismatch repair protein MutS recognizes mispaired bases in DNA and initiates repair in an ATP-dependent manner. Understanding of the allosteric coupling between DNA mismatch recognition and two asymmetric nucleotide binding sites at opposing sides of the MutS dimer requires ident

  17. Bond-based linear indices of the non-stochastic and stochastic edge-adjacency matrix. 1. Theory and modeling of ChemPhys properties of organic molecules.

    Science.gov (United States)

    Marrero-Ponce, Yovani; Martínez-Albelo, Eugenio R; Casañola-Martín, Gerardo M; Castillo-Garit, Juan A; Echevería-Díaz, Yunaimy; Zaldivar, Vicente Romero; Tygat, Jan; Borges, José E Rodriguez; García-Domenech, Ramón; Torrens, Francisco; Pérez-Giménez, Facundo

    2010-11-01

    Novel bond-level molecular descriptors are proposed, based on linear maps similar to the ones defined in algebra theory. The kth edge-adjacency matrix (E(k)) denotes the matrix of bond linear indices (non-stochastic) with regard to canonical basis set. The kth stochastic edge-adjacency matrix, ES(k), is here proposed as a new molecular representation easily calculated from E(k). Then, the kth stochastic bond linear indices are calculated using ES(k) as operators of linear transformations. In both cases, the bond-type formalism is developed. The kth non-stochastic and stochastic total linear indices are calculated by adding the kth non-stochastic and stochastic bond linear indices, respectively, of all bonds in molecule. First, the new bond-based molecular descriptors (MDs) are tested for suitability, for the QSPRs, by analyzing regressions of novel indices for selected physicochemical properties of octane isomers (first round). General performance of the new descriptors in this QSPR studies is evaluated with regard to the well-known sets of 2D/3D MDs. From the analysis, we can conclude that the non-stochastic and stochastic bond-based linear indices have an overall good modeling capability proving their usefulness in QSPR studies. Later, the novel bond-level MDs are also used for the description and prediction of the boiling point of 28 alkyl-alcohols (second round), and to the modeling of the specific rate constant (log k), partition coefficient (log P), as well as the antibacterial activity of 34 derivatives of 2-furylethylenes (third round). The comparison with other approaches (edge- and vertices-based connectivity indices, total and local spectral moments, and quantum chemical descriptors as well as E-state/biomolecular encounter parameters) exposes a good behavior of our method in this QSPR studies. Finally, the approach described in this study appears to be a very promising structural invariant, useful not only for QSPR studies but also for similarity

  18. Ecological mapping and data quality assessment for the needs of ecosystem-based marine spatial management: case study Greek Ionian Sea and the adjacent gulfs

    Directory of Open Access Journals (Sweden)

    Y. ISSARIS

    2012-11-01

    Full Text Available Mapping of ecosystem components (natural and socioeconomic is a prerequisite for ecosystem-based marine spatial management (EB-MSM. To initiate the process of EB-MSM in the Greek Ionian Sea and the adjacent gulfs, the main relevant ecosystem components were mapped based on existing spatial information and expert judgment. The natural components mapped included habitat types and species targeted for conservation, according to national and European legislation and international agreements. Main human activities/pressures related to fisheries, aquaculture, tourism, and industry were also mapped. In order to assess the quality of data used to map ecosystem components and therefore take into consideration the inherent uncertainty, an assessment of 5 semi-quantitative data indicators based on a pedigree matrix was conducted. Through this qualitative approach we gained information related to the sources, acquisition and verification procedures, statistical properties, and temporal & geographical correlation, along with the collection process quality of the ecosystem components under study. A substantial overlapping between ecological features and human activities was identified, confirming the need for a well-planned approach to marine space management, in order to mitigate conflicts for marine resources and conserve marine ecosystems and their associated goods and services.

  19. Mismatch repair balances leading and lagging strand DNA replication fidelity.

    Directory of Open Access Journals (Sweden)

    Scott A Lujan

    Full Text Available The two DNA strands of the nuclear genome are replicated asymmetrically using three DNA polymerases, α, δ, and ε. Current evidence suggests that DNA polymerase ε (Pol ε is the primary leading strand replicase, whereas Pols α and δ primarily perform lagging strand replication. The fact that these polymerases differ in fidelity and error specificity is interesting in light of the fact that the stability of the nuclear genome depends in part on the ability of mismatch repair (MMR to correct different mismatches generated in different contexts during replication. Here we provide the first comparison, to our knowledge, of the efficiency of MMR of leading and lagging strand replication errors. We first use the strand-biased ribonucleotide incorporation propensity of a Pol ε mutator variant to confirm that Pol ε is the primary leading strand replicase in Saccharomyces cerevisiae. We then use polymerase-specific error signatures to show that MMR efficiency in vivo strongly depends on the polymerase, the mismatch composition, and the location of the mismatch. An extreme case of variation by location is a T-T mismatch that is refractory to MMR. This mismatch is flanked by an AT-rich triplet repeat sequence that, when interrupted, restores MMR to > 95% efficiency. Thus this natural DNA sequence suppresses MMR, placing a nearby base pair at high risk of mutation due to leading strand replication infidelity. We find that, overall, MMR most efficiently corrects the most potentially deleterious errors (indels and then the most common substitution mismatches. In combination with earlier studies, the results suggest that significant differences exist in the generation and repair of Pol α, δ, and ε replication errors, but in a generally complementary manner that results in high-fidelity replication of both DNA strands of the yeast nuclear genome.

  20. Regularity extraction from non-adjacent sounds

    Directory of Open Access Journals (Sweden)

    Alexandra eBendixen

    2012-05-01

    Full Text Available The regular behavior of sound sources helps us to make sense of the auditory environment. Regular patterns may, for instance, convey information on the identity of a sound source (such as the acoustic signature of a train moving on the rails. Yet typically, this signature overlaps in time with signals emitted from other sound sources. It is generally assumed that auditory regularity extraction cannot operate upon this mixture of signals because it only finds regularities between adjacent sounds. In this view, the auditory environment would be grouped into separate entities by means of readily available acoustic cues such as separation in frequency and location. Regularity extraction processes would then operate upon the resulting groups. Our new experimental evidence challenges this view. We presented two interleaved sound sequences which overlapped in frequency range and shared all acoustic parameters. The sequences only differed in their underlying regular patterns. We inserted deviants into one of the sequences to probe whether the regularity was extracted. In the first experiment, we found that these deviants elicited the mismatch negativity (MMN component. Thus the auditory system was able to find the regularity between the non-adjacent sounds. Regularity extraction was not influenced by sequence cohesiveness as manipulated by the relative duration of tones and silent inter-tone-intervals. In the second experiment, we showed that a regularity connecting non-adjacent sounds was discovered only when the intervening sequence also contained a regular pattern, but not when the intervening sounds were randomly varying. This suggests that separate regular patterns are available to the auditory system as a cue for identifying signals coming from distinct sound sources. Thus auditory regularity extraction is not necessarily confined to a processing stage after initial sound grouping, but may precede grouping when other acoustic cues are unavailable.

  1. Does the tautomeric status of the adenine bases change upon the dissociation of the A*·A(syn) Topal-Fresco DNA mismatch? A combined QM and QTAIM atomistic insight.

    Science.gov (United States)

    Brovarets', Ol'ha O; Zhurakivsky, Roman O; Hovorun, Dmytro M

    2014-02-28

    We have scrupulously explored the tautomerisation mechanism via the double proton transfer of the A*·A(syn) Topal-Fresco base mispair (C(s) symmetry), formed by the imino and amino tautomers of the adenine DNA base in the anti- and syn-conformations, respectively, bridging quantum-mechanical calculations with Bader's quantum theory of atoms in molecules. It was found that the A*·A(syn) ↔ A·A*(syn) tautomerisation is the asynchronous concerted process. It was established that the A*·A(syn) DNA mismatch is stabilized by the N6H···N6 (6.35) and N1H···N7 (6.17) hydrogen (H) bonds, whereas the A·A*(syn) base mispair (Cs) by the N6H···N6 (8.82) and N7H···N1 (9.78) H-bonds and the C8H···HC2 HH-bond (0.30 kcal mol(-1)). Using the sweeps of the energies of the intermolecular H-bonds, it was observed that the N6H···N6 and N1H···N7/N7H···N1 H-bonds are anti-cooperative and mutually weaken each other in the A*·A(syn) and A·A*(syn) mispairs. It was revealed that the A·A*(syn) DNA mismatch is a dynamically unstable structure with a short lifetime of 1.12 × 10(-13) s and any of its 6 low-frequency intermolecular vibrations can develop during this period of time. This observation makes it impossible to change the tautomeric status of the A bases upon the dissociation of the A*·A(syn) base mispair into the monomers during DNA replication.

  2. Evaluating the Effectiveness of Conservation on Mangroves: A Remote Sensing-Based Comparison for Two Adjacent Protected Areas in Shenzhen and Hong Kong, China

    Directory of Open Access Journals (Sweden)

    Mingming Jia

    2016-07-01

    Full Text Available Mangroves are ecologically important ecosystems and globally protected. The purpose of this study was to evaluate the effectiveness of mangrove conservation efforts in two adjacent protected areas in China that were under the management policies of the Ramsar Convention (Mai Po Marshes Nature Reserve (MPMNR, Hong Kong and China’s National Nature Reserve System (Futian Mangrove National Nature Reserve (FMNNR, Shenzhen. To achieve this goal, eleven Landsat images were chosen and classified, areal extent and landscape metrics were then calculated. The results showed that: from 1973–2015, the areal extent of mangroves in both reserves increased, but the net change for the MPMNR (281.43 hm2 was much higher than those of the FMNNR (101.97 hm2. In general, the area-weighted centroid of the mangroves in FMNNR moved seaward by approximately 120 m, whereas in the MPMNR, the centroid moved seaward even farther (410 m. Although both reserves saw increased integrality and connectivity of the mangrove patches, the patches in the MPMNR always had higher integrality than those in the FMNNR. We concluded that the mangroves in the MPMNR were more effectively protected than those in the FMNNR. This study may provide assistance to the formulation of generally accepted criteria for remote sensing-based evaluation of conservation effectiveness, and may facilitate the development of appropriate mangrove forest conservation and management strategies in other counties.

  3. BEPS Action 2: Neutralizing the Effects on Hybrid Mismatch Arrangements

    NARCIS (Netherlands)

    de Boer, R.; Marres, O.

    2015-01-01

    Curbing tax arbitrage is one of the main priorities of the Organization for Economic Cooperation and Development (OECD) (endorsed by the G20 and the G8) ever since the public debate on base erosion fully erupted. Neutralizing the effect of hybrid mismatch arrangements has become Action No. 2 of the

  4. BEPS Action 2: Neutralizing the Effects on Hybrid Mismatch Arrangements

    NARCIS (Netherlands)

    de Boer, R.; Marres, O.

    2015-01-01

    Curbing tax arbitrage is one of the main priorities of the Organization for Economic Cooperation and Development (OECD) (endorsed by the G20 and the G8) ever since the public debate on base erosion fully erupted. Neutralizing the effect of hybrid mismatch arrangements has become Action No. 2 of the

  5. Single base mismatches in the mRNA target site allow specific seed region-mediated off-target binding of siRNA targeting human coagulation factor 7.

    Science.gov (United States)

    Ravon, Morgane; Berrera, Marco; Ebeling, Martin; Certa, Ulrich

    2012-01-01

    We have analyzed the off-target activity of two siRNAs (F7-1, F7-2) that knock-down human blood coagulation factor 7 mRNA. F7-1 modulates a significant number of non-target transcripts while F7-2 shows high selectivity for the target transcript under various experimental conditions. The 3'-UTRs of all F7-1 off-target genes show statistically significant enrichment of the reverse complement of the F7-1 siRNA seed region located in the guide strand. Seed region enrichment was confirmed in off-target transcripts modulated by siRNA targeting the glucocorticoid receptor. To investigate how these sites contribute to off-target recognition of F7-1, we employed CXCL5 transcript as model system because it contains five F7-1 seed sequence motifs with single base mismatches. We show by transient transfection of reporter gene constructs into HEK293 cells that three out of five sites located in the 3'-UTR region are required for F7-1 off-target activity. For further mechanistic dissection, the sequences of these sites were synthesized and inserted either individually or joined in dimeric or trimeric constructs. Only the fusion constructs were silenced by F7-1 while the individual sites had no off-target activity. Based on F7-1 as a model, a single mismatch between the siRNA seed region and mRNA target sites is tolerated for target recognition and the CXCL5 data suggest a requirement for binding to multiple target sites in off-target transcripts.

  6. Pelvic incidence-lumbar lordosis mismatch predisposes to adjacent segment disease after lumbar spinal fusion

    National Research Council Canada - National Science Library

    Rothenfluh, Dominique A; Mueller, Daniel A; Rothenfluh, Esin; Min, Kan

    ..., and numbers of segments fused with a mean follow-up of 84 months (61–142) (total n = 84). Several radiographic parameters were measured on pre- and postoperative radiographs, including lumbar lordosis measured (LL...

  7. Brain functional network analysis based on mismatch negativity%基于失匹配负波的大脑功能性网络分析

    Institute of Scientific and Technical Information of China (English)

    许学添; 齐德昱; 蔡跃新

    2016-01-01

    根据正常人与听力损伤患者的失匹配负波(MMN)数据建立大脑功能性网络,计算该大脑功能性网络的复杂网络统计特性,发现所建立的功能性网络相对于随机网络具有类似无标度特性,而且具有高聚类系数、小特征路径长度的小世界网络特性;另外,还计算了功能性网络的平均度和网络结构熵,结果发现正常人的功能性网络的平均度、聚类系数、结构熵等参数均高于听力损伤患者的相应参数,提示了听力损伤后脑功能网络连接减弱可能是声源分辨能力下降的中枢表现,同时也反映了平均度、聚类系数、结构熵等功能性网络参数可作为反应听力损伤后声源分辨能力下降的诊断标志。%It establishes a functional brain network according to the Mismatch Negative(MMN)wave data of normal people and patients with hearing impairment. With calculated the complex networks statistical characteristics of the functional brain network, it finds that the established functional brain network has similar no scaling properties with respect to the random network, but also has high clustering coefficient, small characteristic path lengths of small world network charac-teristics. In addition, the average degree of functional network and network structure entropy are calculated. The results show that the average degree, clustering coefficient and structure entropy of the functional network are higher than those of the patients with hearing impairment. It indicates the reduction of functional connectivity after hearing loss may contribute to the decreased spatial discrimination. The functional network parameters of average degree, clustering coefficient and network structure entropy may be considered as the central markers with reflecting the capability of spatial discrimination.

  8. Selective nanoscale growth of lattice mismatched materials

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Seung-Chang; Brueck, Steven R. J.

    2017-06-20

    Exemplary embodiments provide materials and methods of forming high-quality semiconductor devices using lattice-mismatched materials. In one embodiment, a composite film including one or more substantially-single-particle-thick nanoparticle layers can be deposited over a substrate as a nanoscale selective growth mask for epitaxially growing lattice-mismatched materials over the substrate.

  9. A GIS-based methodology to quantitatively define an Adjacent Protected Area in a shallow karst cavity: the case of Altamira cave.

    Science.gov (United States)

    Elez, J; Cuezva, S; Fernandez-Cortes, A; Garcia-Anton, E; Benavente, D; Cañaveras, J C; Sanchez-Moral, S

    2013-03-30

    Different types of land use are usually present in the areas adjacent to many shallow karst cavities. Over time, the increasing amount of potentially harmful matter and energy, of mainly anthropic origin or influence, that reaches the interior of a shallow karst cavity can modify the hypogeal ecosystem and increase the risk of damage to the Palaeolithic rock art often preserved within the cavity. This study proposes a new Protected Area status based on the geological processes that control these matter and energy fluxes into the Altamira cave karst system. Analysis of the geological characteristics of the shallow karst system shows that direct and lateral infiltration, internal water circulation, ventilation, gas exchange and transmission of vibrations are the processes that control these matter and energy fluxes into the cave. This study applies a comprehensive methodological approach based on Geographic Information Systems (GIS) to establish the area of influence of each transfer process. The stratigraphic and structural characteristics of the interior of the cave were determined using 3D Laser Scanning topography combined with classical field work, data gathering, cartography and a porosity-permeability analysis of host rock samples. As a result, it was possible to determine the hydrogeological behavior of the cave. In addition, by mapping and modeling the surface parameters it was possible to identify the main features restricting hydrological behavior and hence direct and lateral infiltration into the cave. These surface parameters included the shape of the drainage network and a geomorphological and structural characterization via digital terrain models. Geological and geomorphological maps and models integrated into the GIS environment defined the areas involved in gas exchange and ventilation processes. Likewise, areas that could potentially transmit vibrations directly into the cave were identified. This study shows that it is possible to define a

  10. 基于虚拟邻区的LTE互操作优化研究%Research of LTE interoperability optimization based on virtual adjacent region

    Institute of Scientific and Technical Information of China (English)

    杨晓敏

    2015-01-01

    TD-LTE建设初期由于覆盖不足,需要通过4G与3G、2G互操作来保证用户业务感知.系统间互操作可最大化地利用现有3G、2G网络的覆盖优势,对4G网络进行有益的补充.首先对丽水莲都区3-4G邻区进行核查,再对未配邻区的边缘小区进行邻区补全核查.提出了加虚拟邻区的方案,着重解决3G到4G重选的问题.最后通过对比测试,证明了虚拟邻区技术和真实邻区可以达到相同的效果.%Due to the lack of coverage in the early of TD-LTE construction, 4G and 3G, 2G interoperability is needed to ensure the user's service-aware. The inter operation of the systems can maximize the existing 3G and 2G network coverage advantage and give a beneficial supplement to the 4G network. This paper firstly checks the 3-4G adjacent regions of the Liandu District of Lishui, and then completes the checking to the edge regions of the adjacent regions without deployment. The virtual adjacent region scheme is put forward to solve the problem of 3G to 4G re-election. The contrast test proved that virtual adjacent regions can achieve the same effect as real adjacent regions.

  11. Discriminating DNA mismatches by electrochemical and gravimetric techniques.

    Science.gov (United States)

    Mazouz, Zouhour; Fourati, Najla; Zerrouki, Chouki; Ommezine, Asma; Rebhi, Lamia; Yaakoubi, Nourdin; Kalfat, Rafik; Othmane, Ali

    2013-10-15

    A silicon nitride functionalized electrode and a 104 MHz lithium tantalate (LiTaO₃) surface acoustic wave (SAW) sensor have been used to investigate target-probe recognition processes. Electrochemical and gravimetric measurements have been considered to monitor hybridization of single base mismatch (SBM) in synthetic oligonucleotides and single-nucleotide polymorphisms ApoE in real clinical genotypes. Obvious discrimination of SBM in nucleotides has been shown by both gravimetric and electrochemical techniques, without labeling nor amplification. Investigations on mismatches nature and position have also been considered. For guanine-adenine (GA), guanine-thymine (GT) and guanine-guanine (GG) mismatches, the sensors responses present a dependence upon positions. Considering the capacitance variations and hybridization rates, results showed that gravimetric transduction is more sensitive than electrochemical one. Moreover, the highest value of GT hybridization rate (in the middle position) was found in accordance with the nearest-neighbor model, where the considered configuration appears as the most thermodynamically stable. For the real samples, where the electrochemical transduction, by combining capacitance and flat-band potential measurements, were found more sensitive, the results show that the realized sensor permits an unambiguous discrimination of recognition between fully complementary, non-complementary and single base mismatched targets, and even between the combination of differently matched strands.

  12. The nature of the transition mismatches with Watson-Crick architecture: the G*·T or G·T* DNA base mispair or both? A QM/QTAIM perspective for the biological problem.

    Science.gov (United States)

    Brovarets', Ol'ha O; Hovorun, Dmytro M

    2015-01-01

    This study provides the first accurate investigation of the tautomerization of the biologically important guanine*·thymine (G*·T) DNA base mispair with Watson-Crick geometry, involving the enol mutagenic tautomer of the G and the keto tautomer of the T, into the G·T* mispair (∆G = .99 kcal mol(-1), population = 15.8% obtained at the MP2 level of quantum-mechanical theory in the continuum with ε = 4), formed by the keto tautomer of the G and the enol mutagenic tautomer of the T base, using DFT and MP2 methods in vacuum and in the weakly polar medium (ε = 4), characteristic for the hydrophobic interfaces of specific protein-nucleic acid interactions. We were first able to show that the G*·T↔G·T* tautomerization occurs through the asynchronous concerted double proton transfer along two antiparallel O6H···O4 and N1···HN3 H-bonds and is assisted by the third N2H···O2 H-bond, that exists along the entire reaction pathway. The obtained results indicate that the G·T* base mispair is stable from the thermodynamic point of view complex, while it is dynamically unstable structure in vacuum and dynamically stable structure in the continuum with ε = 4 with lifetime of 6.4·10(-12) s, that, on the one side, makes it possible to develop all six low-frequency intermolecular vibrations, but, on the other side, it is by three orders less than the time (several ns) required for the replication machinery to forcibly dissociate a base pair into the monomers during DNA replication. One of the more significant findings to emerge from this study is that the short-lived G·T* base mispair, which electronic interaction energy between the bases (-23.76 kcal mol(-1)) exceeds the analogical value for the G·C Watson-Crick nucleobase pair (-20.38 kcal mol(-1)), "escapes from the hands" of the DNA replication machinery by fast transforming into the G*·T mismatch playing an indirect role of its supplier during the DNA replication. So

  13. Determinants of adjacency matrices of graphs

    Directory of Open Access Journals (Sweden)

    Alireza Abdollahi

    2012-12-01

    Full Text Available We study the set of all determinants of adjacency matrices of graphs with a given number of vertices. Using Brendan McKay's data base of small graphs, determinants of graphs with at most $9$ vertices are computed so that the number of non-isomorphic graphs with given vertices whose determinants are all equal to a number is exhibited in a table. Using an idea of M. Newman, it is proved that if $G$ is a graph with $n$ vertices and ${d_1,dots,d_n}$ is the set of vertex degrees of $G$, then $gcd(2m,d^2$ divides the determinant of the adjacency matrix of $G$, where $d=gcd(d_1,dots,d_n$. Possible determinants of adjacency matrices of graphs with exactly two cycles are obtained.

  14. DNA Mismatch Repair and Oxidative DNA Damage: Implications for Cancer Biology and Treatment

    Energy Technology Data Exchange (ETDEWEB)

    Bridge, Gemma; Rashid, Sukaina; Martin, Sarah A., E-mail: sarah.martin@qmul.ac.uk [Centre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ (United Kingdom)

    2014-08-05

    Many components of the cell, including lipids, proteins and both nuclear and mitochondrial DNA, are vulnerable to deleterious modifications caused by reactive oxygen species. If not repaired, oxidative DNA damage can lead to disease-causing mutations, such as in cancer. Base excision repair and nucleotide excision repair are the two DNA repair pathways believed to orchestrate the removal of oxidative lesions. However, recent findings suggest that the mismatch repair pathway may also be important for the response to oxidative DNA damage. This is particularly relevant in cancer where mismatch repair genes are frequently mutated or epigenetically silenced. In this review we explore how the regulation of oxidative DNA damage by mismatch repair proteins may impact on carcinogenesis. We discuss recent studies that identify potential new treatments for mismatch repair deficient tumours, which exploit this non-canonical role of mismatch repair using synthetic lethal targeting.

  15. Compensation of IQ mismatch in optical PDM-OFDM coherent receivers

    Science.gov (United States)

    Chung, Hwan Seok; Chang, Sun Hyok; Kim, Kwangjoon

    2010-10-01

    The performance enhancements based on Gram-Schmidt orthogonalization procedure (GSOP) for compensating IQ mismatch in coherent optical orthogonal frequency division multiplexing (CO-OFDM) systems are investigated. We analytically explore IQ mismatch in optical OFDM systems and investigate the impacts of phase and amplitude IQ mismatch on required optical signal-to-noise ratio (OSNR) for the different values of data mapping and polarization multiplexing. The impacts of analog-to-digital converter (ADC) resolution and the number of samples in GSOP are also evaluated. The results show that the GSOP operation efficiently compensate IQ mismatch induced performance degradations regardless of the amount of IQ phase mismatch, density of data mapping, and polarization multiplexing.

  16. Electrochemical Investigation of Interaction between a Bifunctional Probe and GG Mismatch Duplex.

    Science.gov (United States)

    Li, Jiao; He, Hanping; Peng, Xiaoqian; Huang, Min; Zhang, Xiuhua; Wang, Shengfu

    2015-01-01

    A bifunctional probe (FecNC), containing a recognition part and an electrochemical active center, was applied to electrochemical detection of GG mismatch duplexes. The preparation of gold electrodes modified by mismatch and complementatry duplexes was characterized by electrochemical impedance spectroscopy (EIS) and optimized for better detection in terms of self-assembly time, hybridization time, and incubation time. The interaction between FecNC and DNA duplexes modified on the surface of a gold electrode was explored by square wave voltammetry (SWV) and EIS. The results showed that the DNA duplexes with GG mismatch on the surface of a gold electrode was easily detected by the largest electrochemical signal of the bifunctional probe because of its selective binding to GG mismatches. The bifunctional probe could offer a simple, effective electrochemical detection of GG mismatches, and theoretical bases for development of electrochemical biosensors. Further, the method would be favorable for diagnosis of genetic diseases.

  17. Enhancement of RecA-mediated self-assembly in DNA nanostructures through basepair mismatches and single-strand nicks

    Science.gov (United States)

    Corbett, Sybilla Louise; Sharma, Rajan; Davies, Alexander Giles; Wälti, Christoph

    2017-01-01

    The use of DNA as a structural material for nanometre-scale construction has grown extensively over the last decades. The development of more advanced DNA-based materials would benefit from a modular approach enabling the direct assembly of additional elements onto nanostructures after fabrication. RecA-based nucleoprotein filaments encapsulating short ssDNA have been demonstrated as a tool for highly efficient and fully programmable post-hoc patterning of duplex DNA scaffold. However, the underlying assembly process is not fully understood, in particular when patterning complex DNA topologies. Here, we report the effect of basepair-mismatched regions and single-strand nicks in the double-stranded DNA scaffold on the yield of RecA-based assembly. Significant increases in assembly yield are observed upon the introduction of unpaired basepairs directly adjacent to the assembly region. However, when the unpaired regions were introduced further from the assembly site the assembly yield initially decreased as the length of the unpaired region was increased. These results suggest that an unpaired region acts as a kinetic trap for RecA-based nucleoprotein filaments, impeding the assembly mechanism. Conversely, when the unpaired region is located directly adjacent to the assembly site, it leads to an increase in efficiency of RecA patterning owing to increased breathing of the assembly site.

  18. Mismatching Perspectives and Pacific Transculturality

    Directory of Open Access Journals (Sweden)

    Anne Holden Rønning

    2013-01-01

    Full Text Available Increased critical consciousness and awareness of interculturality in a global and glocal context at the beginning of the twenty-first century has increasingly used the concept of transculturation when discussing modernities. Politically transculturation can be used to describe processes of negotiation in contemporary society that lead to social awareness and solidarity, as well as ensuring the continuity of societies. The fusing of cultural forms leads to a mismatching of perspectives, hence some critics have preferred to use the terms translation and/or transliteracy to describe this concept. Transculturation is related to the “normal processes of artistic borrowing and influence, by which any culture makes part of its contribution to the conversation of mankind,” as Les Murray maintained, and “it engages multiple lines of difference simultaneously” with overlapping boundaries (Rogers 491. Referring to various authors and linking it to cultural appropriation and border crossings, this article examines how the narrative expression of Both Sides of the Moon, to cite the title of Alan Duff’s book, is a key feature of Pacific writing, in an area where centuries of migration from near and far have exposed different cultures to each other on social, political, linguistic and aesthetic levels. These ‘contact zones’, to use Mary Pratt’s words, provide the reader with constantly moving translated identities, cultural hybridity and a use of language that has a highly local significance in a global context.

  19. Phase mismatched optical parametric generation in semiconductor magnetoplasma

    Science.gov (United States)

    Dubey, Swati; Ghosh, S.; Jain, Kamal

    2017-05-01

    Optical parametric generation involves the interaction of pump, signal, and idler waves satisfying law of conservation of energy. Phase mismatch parameter plays important role for the spatial distribution of the field along the medium. In this paper instead of exactly matching wave vector, a small mismatch is admitted with a degree of phase velocity mismatch between these waves. Hence the medium must possess certain finite coherence length. This wave mixing process is well explained by coupled mode theory and one dimensional hydrodynamic model. Based on this scheme, expressions for threshold pump field and transmitted intensity have been derived. It is observed that the threshold pump intensity and transmitted intensity can be manipulated by varying doping concentration and magnetic field under phase mismatched condition. A compound semiconductor crystal of n-InSb is assumed to be shined at 77 K by a 10.6μm CO2 laser with photon energy well below band gap energy of the crystal, so that only free charge carrier influence the optical properties of the medium for the I.R. parametric generation in a semiconductor plasma medium. Favorable parameters were explored to incite the said process keeping in mind the cost effectiveness and conversion efficiency of the process.

  20. SKILLS MISMATCH OF THE YOUNG PEOPLE AT THE EUROPEAN LEVEL

    Directory of Open Access Journals (Sweden)

    Hatos Roxana

    2015-07-01

    Full Text Available Transition from school to work is a main issue with many fields of study. Studies on transition from school to work, have highlight the importance of two categories of factors at the level of the individual formal proceedings which may affect how easy it is to graduate to integrate into the labor market: 1 so far as the educational systems are transmitting specific competences as compared with those general and 2 so far as there are direct links between employers and the education system. In this way, are reduced the costs of selection and allocation for employers. A poor articulation between educational institutions and the labor market produce a high level of unmatched competences of assimilated by formal education and competencies required of the labor market (skill mismatch (Parodi et al., 2012. The surveys with European employers reflect particular difficulties that they are experiencing in employment vacancies. Investigation on the European companies in the spring of 2013 found that 40% of the firms in the EU have difficulty in finding employees with suitable qualification (CEDEFOP-European Center for the Development of the Vocational Training, 2014. Skills mismatch is a generic term that refers to various types of imbalances between skills and competences offered and those required in the labor market. Concept has become one intensely discussed and submitted to measurement in international research on the background concerns the under-utilization human resource. Numerous opinion polls with employers come to the same unexpected conclusion - that despite high unemployment many posts can't find occupants satisfactorily prepared and identify the causes: most of them criticized the lack of skills of the candidates or the absence of skills specific to the workplace. Based on the latest studies on international databases have built a set of questions that, through secondary analysis, we tried to find answers. Questions that we try to give answer

  1. 基于LOD的自适应无裂缝地形渲染%Adaptive terrain rendering with no T-adjacent based on LOD

    Institute of Scientific and Technical Information of China (English)

    郭虎奇; 费向东; 刘小玲

    2013-01-01

    提出了一种新型三角形簇作为GPU的图元绘制单元,结合LOD技术实现了自适应的无裂缝地形渲染.该三角形簇,称为N-簇,分为8种基本类型,不同尺寸和位置的地形网格块都可以通过这8种基本类型进行缩放和平移得到.采用二叉树数据结构组织N-簇,每个二叉树节点对应一种N-簇,同时存储了N-簇的缩放及平移.结合八边形误差算法进行场景LOD的构建,避免了不同LOD层次间过滤产生的T-连接.由于大规模地形的高程数据量及纹理数据量非常庞大,不能一次性载入内存,采用四叉树数据结构分块组织高程数据和纹理数据,在程序运行时进行数据块的动态加载.实验结果表明,N-簇提高了地形三角形网格的绘制效率,同时,整个算法能自适应地进行无裂缝地形渲染,并能满足大规模地形场景实时绘制的要求.%A new kind of triangle cluster, as the render unit of GPU is proposed, combined the LOD technology, which realizes the adaptive terrain rendering with no crack. The new kind of triangle cluster, called N-cluster, has eight base types and the terrain mesh with different size and location can translated from the base types with scaling and translating. Binary tree is used to organize N-cluster, each node contains the information of N-cluster, including type, scale and translation. Octagon metric is utilized to construct LOD of terrain, which can avoid the T-adjacent between different LOD. Because of the massive data of DEM and texture data, which cannot be loaded into memory once, the quad tree is used to organize them and the data mesh is loaded into memory dynamically when running. The experimental result shows that, N-cluster improves the efficiency of terrain rendering, and the total algorithm can adaptively rendering terrain without crack, which can also meet the requirement of real-time rendering of large-scale terrain.

  2. A new interpretation of deformation rates in the Snake River Plain and adjacent basin and range regions based on GPS measurements

    Science.gov (United States)

    Payne, S. J.; McCaffrey, R.; King, R. W.; Kattenhorn, S. A.

    2012-04-01

    Within the Northern Basin and Range Province, USA, we estimate horizontal velocities for 405 sites using Global Positioning System (GPS) phase data collected from 1994 to 2010. The velocities, together with geologic, volcanic, and earthquake data, reveal a slowly deforming region within the Snake River Plain in Idaho and Owyhee-Oregon Plateau in Oregon separated from the actively extending adjacent Basin and Range regions by shear. Our results show a NE-oriented extensional strain rate of 5.6 ± 0.7 × 10-9 yr-1 in the Centennial Tectonic Belt and an ˜E-oriented extensional strain rate of 3.5 ± 0.2 × 10-9 yr-1 in the Great Basin. These extensional rates contrast with the very low strain rate within the 125 km × 650 km region of the Snake River Plain and Owyhee-Oregon Plateau, which is indistinguishable from zero (-0.1 ± 0.4 × 10-9 yr-1). Inversions of the velocities with dyke-opening models indicate that rapid extension by dyke intrusion in volcanic rift zones, as previously hypothesized, is not currently occurring in the Snake River Plain. This slow internal deformation, in contrast to the rapidly extending adjacent Basin and Range regions, indicates shear along the boundaries of the Snake River Plain. We estimate right-lateral shear with slip rates of 0.3-1.4 mm yr-1 along the northwestern boundary adjacent to the Centennial Tectonic Belt and left-lateral oblique extension with slip rates of 0.5-1.5 mm yr-1 along the southeastern boundary adjacent to the Intermountain Seismic Belt. The fastest lateral shearing evident in the GPS occurs near the Yellowstone Plateau where strike-slip focal mechanisms and faults with observed strike-slip components of motion are documented. The regional velocity gradients are best fit by nearby poles of rotation for the Centennial Tectonic Belt, Snake River Plain, Owyhee-Oregon Plateau, and eastern Oregon, indicating that clockwise rotation is not locally driven by Yellowstone hotspot volcanism, but instead by extension to the

  3. A Noise and Mismatches of Delay Cells and Their Effects on DLLs

    Directory of Open Access Journals (Sweden)

    Mohammad Gholami

    2014-04-01

    Full Text Available Jitter is one of the most important parameters in design of delay locked loop (DLL based frequency synthesizer. In this paper noise and mismatches of conventional delay cells which are mainly used in the DLLs architecture are introduced completely. First, time domain equations related to noise and mismatches of conventional delay cells are reported. Then, these equations are used to calculate jitter of DLL due to mismatch and noise of delay cells. At last closed form equations are obtained which can be used in the designing of low jitter DLLs. To validate these equations, a conventional DLL is designed in TSMC 0.18um CMOS Technology.

  4. Mismatch detection in DNA monolayers by atomic force microscopy and electrochemical impedance spectroscopy

    Directory of Open Access Journals (Sweden)

    Maryse D. Nkoua Ngavouka

    2016-02-01

    Full Text Available Background: DNA hybridization is at the basis of most current technologies for genotyping and sequencing, due to the unique properties of DNA base-pairing that guarantee a high grade of selectivity. Nonetheless the presence of single base mismatches or not perfectly matched sequences can affect the response of the devices and the major challenge is, nowadays, to distinguish a mismatch of a single base and, at the same time, unequivocally differentiate devices read-out of fully and partially matching sequences.Results: We present here two platforms based on different sensing strategies, to detect mismatched and/or perfectly matched complementary DNA strands hybridization into ssDNA oligonucleotide monolayers. The first platform exploits atomic force microscopy-based nanolithography to create ssDNA nano-arrays on gold surfaces. AFM topography measurements then monitor the variation of height of the nanostructures upon biorecognition and then follow annealing at different temperatures. This strategy allowed us to clearly detect the presence of mismatches. The second strategy exploits the change in capacitance at the interface between an ssDNA-functionalized gold electrode and the solution due to the hybridization process in a miniaturized electrochemical cell. Through electrochemical impedance spectroscopy measurements on extended ssDNA self-assembled monolayers we followed in real-time the variation of capacitance, being able to distinguish, through the difference in hybridization kinetics, not only the presence of single, double or triple mismatches in the complementary sequence, but also the position of the mismatched base pair with respect to the electrode surface.Conclusion: We demonstrate here two platforms based on different sensing strategies as sensitive and selective tools to discriminate mismatches. Our assays are ready for parallelization and can be used in the detection and quantification of single nucleotide mismatches in microRNAs or

  5. Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays

    Directory of Open Access Journals (Sweden)

    Hulme Helen

    2008-07-01

    Full Text Available Abstract Background Microarrays are an important and widely used tool. Applications include capturing genomic DNA for high-throughput sequencing in addition to the traditional monitoring of gene expression and identifying DNA copy number variations. Sequence mismatches between probe and target strands are known to affect the stability of the probe-target duplex, and hence the strength of the observed signals from microarrays. Results We describe a large-scale investigation of microarray hybridisations to murine probes with known sequence mismatches, demonstrating that the effect of mismatches is strongly position-dependent and for small numbers of sequence mismatches is correlated with the maximum length of perfectly matched probe-target duplex. Length of perfect match explained 43% of the variance in log2 signal ratios between probes with one and two mismatches. The correlation with maximum length of perfect match does not conform to expectations based on considering the effect of mismatches purely in terms of reducing the binding energy. However, it can be explained qualitatively by considering the entropic contribution to duplex stability from configurations of differing perfect match length. Conclusion The results of this study have implications in terms of array design and analysis. They highlight the significant effect that short sequence mismatches can have upon microarray hybridisation intensities even for long oligonucleotide probes. All microarray data presented in this study are available from the GEO database 1, under accession number [GEO: GSE9669

  6. Low-Complexity Estimation of CFO and Frequency Independent I/Q Mismatch for OFDM Systems

    Directory of Open Access Journals (Sweden)

    Jayalath ADS

    2009-01-01

    Full Text Available CFO and I/Q mismatch could cause significant performance degradation to OFDM systems. Their estimation and compensation are generally difficult as they are entangled in the received signal. In this paper, we propose some low-complexity estimation and compensation schemes in the receiver, which are robust to various CFO and I/Q mismatch values although the performance is slightly degraded for very small CFO. These schemes consist of three steps: forming a cosine estimator free of I/Q mismatch interference, estimating I/Q mismatch using the estimated cosine value, and forming a sine estimator using samples after I/Q mismatch compensation. These estimators are based on the perception that an estimate of cosine serves much better as the basis for I/Q mismatch estimation than the estimate of CFO derived from the cosine function. Simulation results show that the proposed schemes can improve system performance significantly, and they are robust to CFO and I/Q mismatch.

  7. Educational Mismatches and Labor Market Outcomes: Evidence from Both Vertical and Horizontal Mismatches in Thailand

    Science.gov (United States)

    Pholphirul, Piriya

    2017-01-01

    Purpose: Educational mismatches constitute negative impacts on labor markets in most countries, Thailand is no exception. The purpose of this paper is to quantify the degree of educational mismatch in Thailand and its impacts on labor market outcomes. Design/methodology/approach: This study analyzes data obtained from Thailand's Labor Force Survey…

  8. Nonspinning searches for spinning binaries in ground-based detector data: Amplitude and mismatch predictions in the constant precession cone approximation

    CERN Document Server

    Brown, D; O'Shaughnessy, R

    2012-01-01

    Current searches for compact binary mergers by ground-based gravitational-wave detectors assume for simplicity the two bodies are not spinning. If the binary contains compact objects with significant spin, then this can reduce the sensitivity of these searches, particularly for black hole--neutron star binaries. In this paper we investigate the effect of neglecting precession on the sensitivity of searches for spinning binaries using non-spinning waveform models. We demonstrate that in the sensitive band of Advanced LIGO, the angle between the binary's orbital angular momentum and its total angular momentum is approximately constant. Under this \\emph{constant precession cone} approximation, we show that the gravitational-wave phasing is modulated in two ways: a secular increase of the gravitational-wave phase due to precession and an oscillation around this secular increase. We show that this secular evolution occurs in precisely three ways, corresponding to physically different apparent evolutions of the bin...

  9. Fuzzy Backstepping Sliding Mode Control for Mismatched Uncertain System

    Directory of Open Access Journals (Sweden)

    H. Q. Hou

    2014-06-01

    Full Text Available Sliding mode controllers have succeeded in many control problems that the conventional control theories have difficulties to deal with; however it is practically impossible to achieve high-speed switching control. Therefore, in this paper an adaptive fuzzy backstepping sliding mode control scheme is derived for mismatched uncertain systems. Firstly fuzzy sliding mode controller is designed using backstepping method based on the Lyapunov function approach, which is capable of handling mismatched problem. Then fuzzy sliding mode controller is designed using T-S fuzzy model method, it can improve the performance of the control systems and their robustness. Finally this method of control is applied to nonlinear system as a case study; simulation results are also provided the performance of the proposed controller.

  10. ETHIOPIAN RIFT AND ADJACENT HIGHLANDS

    African Journals Online (AJOL)

    of the kinetic temperature of the central Ethiopian rift lakes and adjacent highlands. ... component of the surface radiation balance from only one surface measurement derived from NOAA. TM and ... The basin studied is part of the Ethiopian Rift system bounded within the limits .... Topographic conditions, which determine ...

  11. Cyclic mismatch binding ligand CMBL4 binds to the 5'-T-3'/5'-GG-3' site by inducing the flipping out of thymine base.

    Science.gov (United States)

    Mukherjee, Sanjukta; Dohno, Chikara; Asano, Kaori; Nakatani, Kazuhiko

    2016-09-01

    A newly designed cyclic bis-naphthyridine carbamate dimer CMBL4: with a limited conformational flexibility was synthesized and characterized. Absorption spectra revealed that two naphthyridines in CMBL4: were stacked on each other in aqueous solutions. The most efficient binding of CMBL4: to DNA was observed for the sequence 5'-T-3'/5'-GG-3' (T/GG) with the formation of a 1:1 complex, which is one of possible structural elements involved in the higher order structures of (TGG)n repeat DNA triggering the genome microdeletion. Surface plasmon resonance assay also showed the binding of CMBL4: with TGG repeat DNA. Potassium permanganate oxidation studies of CMBL4: -bound duplex containing the T/GG site showed that the CMBL4: -binding accelerated the oxidation of thymine at that site, which suggests the flipping out of the thymine base from a π-stack. Preferential binding was observed for CMBL4: compared with its acyclic variants, which suggests the marked significance of the macrocyclic structure for the recognition of the T/GG site.

  12. Current status of the Scandiatransplant acceptable mismatch program.

    Science.gov (United States)

    Weinreich, I D; Pedersen, F; Grunnet, N

    2013-04-01

    This article describes the Scandiatransplant Acceptable Mismatch Program (STAMP), which was set into action in 2009. The aim of STAMP is to define human leukocyte antigens (HLA) toward which the potential kidney recipient has not developed antibodies, as "acceptable mismatches" in the Scandiatransplant database. In many cases this may improve the probability for a highly immunized recipient to receive a suitable kidney graft from a deceased donor. Using data extracted from the Scandiatransplant database on the outcomes of the program after the first 3 years, 31/115 recipients included in the program have undergone transplantation. From 2008 to 2011 the mean waiting time for highly immunized patients has decreased from 42 to 37 months. Continuous evaluation and follow-up of the program is essential to improve the procedures and outcomes. Calculation of transplantability based on a given set of acceptable mismatches was added to the program in 2011, based on the historical deceased donor pool providing the possibility of a specific patient to receive a kidney through STAMP. It is still a challenge for the tissue typing laboratories to determine which detected HLA antibodies are clinical relevant. We concluded that STAMP has had the intended effects, however adjustments and improvements is an ongoing process. As an improvment of the program HLA-C was added to the STAMP search algorithm in September 2012.

  13. Wavelength mismatch effect in electromagnetically induced absorption

    Science.gov (United States)

    Bharti, Vineet; Wasan, Ajay; Natarajan, Vasant

    2016-07-01

    We present a theoretical investigation of the phenomenon of electromagnetically induced absorption (EIA) in a 4-level system consisting of vee and ladder subsystems. The four levels are coupled using one weak probe field, and two strong control fields. We consider an experimental realization using energy levels of Rb. This necessitates dealing with different conditions of wavelength mismatch-near-perfect match where all three wavelengths are approximately equal; partial mismatch where the wavelength of one control field is less than the other fields; and complete mismatch where all three wavelengths are unequal. We present probe absorption profiles with Doppler averaging at room temperature to account for experiments in a room temperature Rb vapor cell. Our analysis shows that EIA resonances can be studied using Rydberg states excited with diode lasers.

  14. Wavelength mismatch effect in electromagnetically induced absorption

    CERN Document Server

    Bharti, Vineet; Natarajan, Vasant

    2016-01-01

    We present a theoretical investigation of the phenomenon of electromagnetically induced absorption (EIA) in a 4-level system consisting of vee and ladder subsystems. The four levels are coupled using one weak probe field, and two strong control fields. We consider an experimental realization using energy levels of Rb. This necessitates dealing with different conditions of wavelength mismatch---near-perfect match where all three wavelengths are approximately equal; partial mismatch where the wavelength of one control field is less than the other fields; and complete mismatch where all three wavelengths are unequal. We present probe absorption profiles with Doppler averaging at room temperature to account for experiments in a room temperature Rb vapor cell. Our analysis shows that EIA resonances can be studied using Rydberg states excited with diode lasers.

  15. A new interpretation of deformation rates in the Snake River Plain and adjacent basin and range regions based on GPS measurements

    Energy Technology Data Exchange (ETDEWEB)

    S.J. Payne; R. McCaffrey; R.W. King; S.A. Kattenhorn

    2012-04-01

    We evaluate horizontal Global Positioning System (GPS) velocities together with geologic, volcanic, and seismic data to interpret extension, shear, and contraction within the Snake River Plain and the Northern Basin and Range Province, U.S.A. We estimate horizontal surface velocities using GPS data collected at 385 sites from 1994 to 2009 and present an updated velocity field within the Stable North American Reference Frame (SNARF). Our results show an ENE-oriented extensional strain rate of 5.9 {+-} 0.7 x 10{sup -9} yr{sup -1} in the Centennial Tectonic belt and an E-oriented extensional strain rate of 6.2 {+-} 0.3 x 10{sup -9} yr{sup -1} in the Intermountain Seismic belt combined with the northern Great Basin. These extensional strain rates contrast with the regional north-south contraction of -2.6 {+-} 1.1 x 10{sup -9} yr{sup -1} calculated in the Snake River Plain and Owyhee-Oregon Plateau over a 125 x 650 km region. Tests that include dike-opening reveal that rapid extension by dike intrusion in volcanic rift zones does not occur in the Snake River Plain at present. This slow internal deformation in the Snake River Plain is in contrast to the rapidly-extending adjacent Basin and Range provinces and implies shear along boundaries of the Snake River Plain. We estimate right-lateral shear with slip rates of 0.5-1.5 mm/yr along the northwestern boundary adjacent to the Centennial Tectonic belt and left-lateral oblique extension with slip rates of <0.5 to 1.7 mm/yr along the southeastern boundary adjacent to the Intermountain Seismic belt. The fastest lateral shearing occurs near the Yellowstone Plateau where strike-slip focal mechanisms and faults with observed strike-slip components of motion are documented. The regional GPS velocity gradients are best fit by nearby poles of rotation for the Centennial Tectonic belt, Idaho batholith, Snake River Plain, Owyhee-Oregon Plateau, and central Oregon, indicating that clockwise rotation is driven by extension to the

  16. Numerical Analysis on Transmission Characteristics of a Bragg Grating Assisted Mismatched Fiber Coupler

    Institute of Scientific and Technical Information of China (English)

    WEI Daoping; JIANG Zhong'ao; ZHAO Yucheng; JIAN Shuisheng

    2000-01-01

    Based on mode-coupled theory, a Bragg grating assisted mismatched fiber coupler is analyzed theoretically. At the same time, a detailed numerical analysis on transmission characteristics of the coupler is carried out when it considers the arcs of two fibers in the coupling region of the coupler or not, and the optimized design on the Bragg grating assisted mismatched fiber coupler for wavelength-division multiplexing/ demultiplexing is proposed.

  17. The selective recognition of mismatched d(GCGAGC)2 by the cobalt(III) complex

    Institute of Scientific and Technical Information of China (English)

    CHEN; Huili; YANG; Pin

    2005-01-01

    We studied the binding of [Co(phen)2(HPIP)]Cl3 to mismatched d(GCGAGC)2 containing two sheared G:A mispairs by NMR. The result shows that the complex was intercalated into G:A region from the minor groove and extended to the major groove, and could selectively recognize the mispairs. 31P NMR indicates that the complex binding induced the change of the phosphate backbone in the mismatched base pairs region.

  18. Mismatch and noise in modern IC processes

    CERN Document Server

    Marshall, Andrew

    2009-01-01

    Component variability, mismatch, and various noise effects are major contributors to design limitations in most modern IC processes. Mismatch and Noise in Modern IC Processes examines these related effects and how they affect the building block circuits of modern integrated circuits, from the perspective of a circuit designer.Variability usually refers to a large scale variation that can occur on a wafer to wafer and lot to lot basis, and over long distances on a wafer. This phenomenon is well understood and the effects of variability are included in most integrated circuit design with the use

  19. Using stable MutS dimers and tetramers to quantitatively analyze DNA mismatch recognition and sliding clamp formation

    NARCIS (Netherlands)

    M.K. Groothuizen; A. Fish (Alexander); M.V. Petoukhov (Maxim); A. Reumer (Annet); L. Manelyte (Laura); H.H.K. Winterwerp (Herrie); M.G. Marinus (Martin); J.H.G. Lebbink (Joyce); D.I. Svergun (Dmitri); P. Friedhoff (Peter); T.K. Sixma (Titia)

    2013-01-01

    textabstractThe process of DNA mismatch repair is initiated when MutS recognizes mismatched DNA bases and starts the repair cascade. The Escherichia coli MutS protein exists in an equilibrium between dimers and tetramers, which has compromised biophysical analysis. To uncouple these states, we have

  20. Process-Based Evidence of Coastal Accretion Adjacent to a Natural Inlet and Ebb-Tidal Delta on the North Florida Atlantic Coast

    Science.gov (United States)

    Adams, P. N.; Olabarrieta, M.; Keough, K. M.

    2015-12-01

    Physical mechanisms of tidal inlet accretion are difficult to document because of the episodic nature of sediment delivery to the coast from fluvial sources and the complex patterns of current magnitudes and directions arising from the interaction of nearshore waves with ebb-tidal delta bathymetry. Using monthly RTK-GPS field measurements of beach topography adjacent to a natural inlet, we document a shoreline change time series that illustrates a bi-directional, alongshore spreading pattern of accretion following an exceptionally high rainfall-discharge event in May 2009. Numerical modeling of wave set-up and nearshore currents in the vicinity of the inlet and ebb tidal delta produces depth-averaged flow velocity patterns consistent with our field observations of coastal accretion. Our results are in agreement with an accretion mechanism, proposed by other researchers, that involves sediment delivery to the margins of the ebb tidal delta during high velocity ebb flows that accompany large rainfall-discharge events, followed by onshore migration of swash bars during subsequent days to months, at a rate dependent upon the timing of nearshore wave energy delivery to the site.

  1. Sedimentary and crustal thicknesses and Poisson's ratios for the NE Tibetan Plateau and its adjacent regions based on dense seismic arrays

    Science.gov (United States)

    Wang, Weilai; Wu, Jianping; Fang, Lihua; Lai, Guijuan; Cai, Yan

    2017-03-01

    The sedimentary and crustal thicknesses and Poisson's ratios of the NE Tibetan Plateau and its adjacent regions are estimated by the h- κ stacking and CCP image of receiver functions from the data of 1,317 stations. The horizontal resolution of the obtained results is as high as 0.5° × 0.5°, which can be used for further high resolution model construction in the region. The crustal thicknesses from Airy's equilibrium are smaller than our results in the Sichuan Basin, Qilian tectonic belt, northern Alxa block and Qaidam Basin, which is consistent with the high densities in the mantle lithosphere and may indicate that the high-density lithosphere drags crust down overall. High Poisson's ratios and low velocity zones are found in the mid- and lower crust beneath eastern Qilian tectonic belt and the boundary areas of the Ordos block, indicating that partial melting may exist in these regions. Low Poisson's ratios and low-velocity anomalies are observed in the crust in the NE Tibetan Plateau, implying that the mafic lower crust is thinning or missing and that the mid- and lower crust does not exhibit melting or partial melting in the NE Tibetan Plateau, and weak flow layers are not likely to exist in this region.

  2. Velocity synchronization of multi-agent systems with mismatched parameters via sampled position data.

    Science.gov (United States)

    Sun, Wen; Huang, Chunli; Lü, Jinhu; Li, Xiong; Chen, Shihua

    2016-02-01

    Power systems are special multi-agent systems with nonlinear coupling function and symmetric structures. This paper extends these systems to a class of multi-agent systems with mismatched parameters, linear coupling function, and asymmetric structures and investigates their velocity synchronization via sampled position data. The dynamics of the agents is adopted as that of generators with mismatched parameters, while the system structures are supposed to be complex. Two distributed linear consensus protocols are designed, respectively, for multi-agent systems without or with communication delay. Necessary and sufficient conditions based on the sampling period, the mismatched parameters, the delay, and the nonzero eigenvalues of the Laplacian matrix are established. It is shown that velocity synchronization of multi-agent systems with mismatched parameters can be achieved if the sampled period is chosen appropriately. Simulations are given to illustrate the effectiveness of the theoretical results.

  3. Cross-correlation-based detection and characterisation of microseismicity adjacent to the locked, late-interseismic Alpine Fault, South Westland, New Zealand

    Science.gov (United States)

    Chamberlain, Calum J.; Boese, Carolin M.; Townend, John

    2017-01-01

    The Alpine Fault is inferred on paleoseismological grounds to produce magnitude 8 earthquakes approximately every 330 yrs and to have last ruptured almost 300 yrs ago in 1717 AD. Despite approximately 90% of its typical interseismic period having elapsed since the last major earthquake, the Alpine Fault exhibits little present-day microseismicity and no geodetic evidence for shallow creep. Determining the mechanical state of the fault ahead of a future earthquake is a key objective of several studies, including the Deep Fault Drilling Project (DFDP). Here we use a network of borehole seismometers installed in conjunction with DFDP to detect and characterise low-magnitude seismicity adjacent to the central section of the Alpine Fault. We employ matched-filter detection techniques, automated cross-correlation phase picking, and singular value decomposition-derived magnitude estimation to construct a high-precision catalogue of 283 earthquakes within 5 km of the fault trace in an otherwise seismically quiet zone. The newly recognised seismicity occurs in non-repeating, spatially and temporally limited sequences, similar to sequences previously documented using standard methods but at significantly lower magnitudes of ML < 1.8. These earthquakes are not clustered on a single distinctive structure, and we infer that they are distributed throughout a highly fractured zone surrounding the Alpine Fault. Focal mechanisms computed for 13 earthquakes using manual polarity picks exhibit predominantly strike-slip faulting, consistent with focal mechanisms observed further from the fault. We conclude that the Alpine Fault is locked and accumulating strain throughout the seismogenic zone at this location.

  4. Game, set, match for factor VIII mismatch?

    Science.gov (United States)

    Miller, Connie H

    2015-08-13

    In this issue of Blood, Gunasekera et al provide evidence that the high rate of factor VIII (FVIII) inhibitors seen in black hemophilia A (HA) patients is not due to a mismatch between the structure of treatment products and FVIII genotypes common in blacks.

  5. Distributivity and Agreement mismatches in Serbian

    NARCIS (Netherlands)

    Bosnic, Ana

    2016-01-01

    This paper presents a truth value judgment study done on two types of numerals in the Serbian numerical system and corresponding verbal agreement mismatch that is characteristic for the numerals in question. Recent work on agreement and distributivity suggests that singular verbal marking promotes d

  6. Enteroenteroanastomosis near adjacent ileocecal valve in infants

    Institute of Scientific and Technical Information of China (English)

    Wei-Wei Jiang; Xiao-Qun Xu; Qi-Ming Geng; Jie Zhang; Huan Chen; Xiao-Feng Lv; Chang-Gui Lu

    2012-01-01

    AIM:To investigate the feasibility and the effectiveness of ileoileostomy in the region adjacent to the ileocecal valve,which can retain the ileocecal valve in infants.METHODS:This is a retrospective review of 48 patients who underwent ileoileostomy in the region adjacent to the ileocecal valve (group 1) and 34 patients who underwent ileocecal resections and ileotransversanastomosis (group 2).Patients were monitored for the time to flatus,resumption of eating,length of hospital stay after surgery,serum total bile acid,vitamin B12 and postoperative complications.RESULTS:The time to flatus,time until resumption of eating and post-operative length of hospital stay showed no statistically significant differences between the two groups.Serum total bile acid and vitamin B12 were not significantly different between the two groups at post-operative day 1 and day 3,but were significantly decreased at 1 wk after operation in group 2.None of the patients died or suffered from stomal leak in these two groups.However,the incidence of diarrhea,intestinal infection,disturbance of acid-base balance and water-electrolytes in group 1 was lower than in group 2.CONCLUSION:Ileoileostomy in the region adjacent to the ileocecal valve is safe and results in fewer complications than ileotransversanastomosis in infants.

  7. Enteroenteroanastomosis near adjacent ileocecal valve in infants

    Science.gov (United States)

    Jiang, Wei-Wei; Xu, Xiao-Qun; Geng, Qi-Ming; Zhang, Jie; Chen, Huan; Lv, Xiao-Feng; Lu, Chang-Gui; Tang, Wei-Bing

    2012-01-01

    AIM: To investigate the feasibility and the effectiveness of ileoileostomy in the region adjacent to the ileocecal valve, which can retain the ileocecal valve in infants. METHODS: This is a retrospective review of 48 patients who underwent ileoileostomy in the region adjacent to the ileocecal valve (group 1) and 34 patients who underwent ileocecal resections and ileotransversanastomosis (group 2). Patients were monitored for the time to flatus, resumption of eating, length of hospital stay after surgery, serum total bile acid, vitamin B12 and postoperative complications. RESULTS: The time to flatus, time until resumption of eating and post-operative length of hospital stay showed no statistically significant differences between the two groups. Serum total bile acid and vitamin B12 were not significantly different between the two groups at post-operative day 1 and day 3, but were significantly decreased at 1 wk after operation in group 2. None of the patients died or suffered from stomal leak in these two groups. However, the incidence of diarrhea, intestinal infection, disturbance of acid-base balance and water-electrolytes in group 1 was lower than in group 2. CONCLUSION: Ileoileostomy in the region adjacent to the ileocecal valve is safe and results in fewer complications than ileotransversanastomosis in infants. PMID:23326139

  8. Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA.

    Science.gov (United States)

    Sydow, Jasmin F; Brueckner, Florian; Cheung, Alan C M; Damsma, Gerke E; Dengl, Stefan; Lehmann, Elisabeth; Vassylyev, Dmitry; Cramer, Patrick

    2009-06-26

    We show that RNA polymerase (Pol) II prevents erroneous transcription in vitro with different strategies that depend on the type of DNARNA base mismatch. Certain mismatches are efficiently formed but impair RNA extension. Other mismatches allow for RNA extension but are inefficiently formed and efficiently proofread by RNA cleavage. X-ray analysis reveals that a TU mismatch impairs RNA extension by forming a wobble base pair at the Pol II active center that dissociates the catalytic metal ion and misaligns the RNA 3' end. The mismatch can also stabilize a paused state of Pol II with a frayed RNA 3' nucleotide. The frayed nucleotide binds in the Pol II pore either parallel or perpendicular to the DNA-RNA hybrid axis (fraying sites I and II, respectively) and overlaps the nucleoside triphosphate (NTP) site, explaining how it halts transcription during proofreading, before backtracking and RNA cleavage.

  9. Insights Into Finding a Mismatch Through the Structure of a Mispaired DNA Bound By a Rhodium Intercalator

    Energy Technology Data Exchange (ETDEWEB)

    Pierre, V.C.; Kaiser, J.T.; Barton, J.K.; /Caltech

    2007-07-12

    We report the 1.1-angstrom resolution crystal structure of a bulky rhodium complex bound to two different DNA sites, mismatched and matched in the oligonucleotide 5'-(dCGGAAATTCCCG){sub 2}-3'. At the AC mismatch site, the structure reveals ligand insertion from the minor groove with ejection of both mismatched bases and elucidates how destabilized mispairs in DNA may be recognized. This unique binding mode contrasts with major groove intercalation, observed at a matched site, where doubling of the base pair rise accommodates stacking of the intercalator. Mass spectral analysis reveals different photocleavage products associated with the two binding modes in the crystal, with only products characteristic of mismatch binding in solution. This structure, illustrating two clearly distinct binding modes for a molecule with DNA, provides a rationale for the interrogation and detection of mismatches.

  10. Adjacency-preserving spatial treemaps

    Directory of Open Access Journals (Sweden)

    Kevin Buchin

    2016-03-01

    Full Text Available Rectangular layouts, subdivisions of an outer rectangle into smaller rectangles, have many applications in visualizing spatial information, for instance in rectangular cartograms in which the rectangles represent geographic or political regions. A spatial treemap is a rectangular layout with a hierarchical structure: the outer rectangle is subdivided into rectangles that are in turn subdivided into smaller rectangles. We describe algorithms for transforming a rectangular layout that does not have this hierarchical structure, together with a clustering of the rectangles of the layout, into a spatial treemap that respects the clustering and also respects to the extent possible the adjacencies of the input layout.

  11. Design of nonlinear compensated bandgap reference based on mismatch control%基于失配控制的非线性补偿带隙基准电路设计

    Institute of Scientific and Technical Information of China (English)

    吴金; 聂卫东; 常昌远; 渠宁; 李浩

    2011-01-01

    在一阶线性补偿基准非线性温度特性分析基础上,提出了利用基准电路内部可控非线性失调电压实现高阶补偿的方法,即利用3路互偏结构代替传统基准电路中的2路自偏置结构,在宽温度范围内,理想状态下的基准温度系数相比一阶线性补偿明显降低.与其他类型的分段高阶补偿相比,基于失配补偿的带隙基准不仅结构简单,而且工艺稳定性更好.基于CSMC 0.18μmCMOS工艺完成了该基准电路的MPW验证,在-20~120℃温度范围内,基准温度系数的测试结果最低为6.2×10-6/℃.基于理论与实测结果误差产生原因的分析,提出了电阻修调以及面积功耗折中方面的改进措施.%Based on the analysis of the nonlinear-temperature characteristics of the first-order linear compensated bandgap reference (BGR), a high-order nonlinear compensation method is proposed by utilizing the controllable systemic nonlinear offset voltage within the bandgap circuit, where the three-branches coupling biasing structures are used to replace the traditional two-branches self-biasing structures, and the ideal temperature coefficient within a wide temperature range is reduced significantly as compared to that of the first-order linear compensation one. Besides, compared with other types of segmental high-order compensated circuit, the mismatch compensated BGR is not only simple in circuit structure but also more stable in manufacture process. The proposed reference is fabricated in CSMC 0. 18 μm CMOS process, and the tested minimum temperature coefficient within a temperature range from -20 to 120 ℃ is 6. 2 × 10-6/℃. Finally, based on the error analysis between theory and experimental results, improvements in resistor trimming and tradeoffs between area and power are proposed.

  12. Circuit mismatch influence on performance of paralleling silicon carbide MOSFETs

    DEFF Research Database (Denmark)

    Li, Helong; Munk-Nielsen, Stig; Pham, Cam

    2014-01-01

    This paper focuses on circuit mismatch influence on performance of paralleling SiC MOSFETs. Power circuit mismatch and gate driver mismatch influences are analyzed in detail. Simulation and experiment results show the influence of circuit mismatch and verify the analysis. This paper aims to give...... suggestions on paralleling discrete SiC MOSFETs and designing layout of power modules with paralleled SiC MOSFETs dies....

  13. Architectural mismatch issues in identity management deployment

    DEFF Research Database (Denmark)

    Andersen, Mads Schaarup

    2010-01-01

    Integrating Commercial Off-The-Shelf products in a company's software product portfolio offers business value, but introduces challenges from a software architecture perspective. In this paper, the research challenges in relation to identity management in the Danish municipality administration...... system called Opus, are outlined. Opus BRS is the identity management part of Opus. Opus integrates SAP, legacy mainframe systems, and other third party systems of the individual municipality. Each of these systems define their own software architecture and access control model, leading to architectural...... mismatch with an impact on security, usability, and maintainability. The research project is discussed and access control and identity provisioning are recognized as the major areas of interest in relation to the mismatch challenges. The project is carried out in close cooperation with KMD, one...

  14. Skill mismatch and overeducation in transition economies

    OpenAIRE

    Kupets, Olga

    2015-01-01

    Large imbalances between the supply and demand for skills in transition economies are driven by rapid economic restructuring, misalignment of the education system with labor market needs, and underdeveloped adult education and training systems. The costs of mismatches can be large and long-lasting for workers, firms, and economies, with long periods of overeducation implying a loss of human capital for individuals and ineffective use of resources for the economy. To make informed decisions, p...

  15. A Single Base Substitution Adjacent to the Stop Codon in the downstream of the SMP3 gene Affects its Post-trancriptional process in Saccharomyces cerevisiae

    Directory of Open Access Journals (Sweden)

    Donny Widianto

    2015-11-01

    Full Text Available The smp3-1 mutant allele confers increased holding stability of heterologous plasmid, pSR1, and a temperature-sensitive growth defect which is remediable by the addition of 1 M sorbitol as the osmotic stabilizer. The smp3-1 allele contains two base substitutions; one is in the open reading frame and changed the 490th CAT (encoding Histidine to TAT (tyrosine, and the other one is an A for G substitution, at 2 bp downstream from termination codon. These base substitutions were separated each other by recombination at a BstNI site located between these two substitutions. The base substitution in the 3'' untranslated region was found to be lethal and the defect was unremediable by the osmotic stabilizer, while that in the open reading frame has no appreciable effect to the cell. Thus, both the base substitutions join together confer the smp3-1 mutant phenotype. The smp3-1 mutant cells cultivated at 37 OC in nutrient medium containing 1 M sorbitol showed similar smp3 transcription as in the wild type. These facts suggest that smp3-1 mutation has a defect in its post-transcriptional process.

  16. Ecologic and geographic distributions of the vascular plants of southern Nye County, and adjacent parts of Clark, Lincoln, and Esmeralda Counties, Nevada. [Based on collections made in 1970

    Energy Technology Data Exchange (ETDEWEB)

    Beatley, J. C.

    1971-01-01

    A catalog is compiled of the vascular plants indiginous to Nye, Clark, Lincoln, and Esmeralda Counties of Nevada based on collections made in 1970. This compilation is an update of previous collections in these areas and is a supplement to report, UCLA--12-705. (ERB)

  17. Spatial and temporal patterns of Ellenberg nutrient values in forests of Germany and adjacent regions - a survey based on phytosociological databases

    NARCIS (Netherlands)

    Ewald, J.; Hennekens, S.M.; Conrad, S.; Wohlgemuth, T.; Jansen, F.; Jenssen, M.; Cornelis, J.; Michiels, H.G.; Kayser, J.; Chytry, M.

    2013-01-01

    Within the last 30 years the role of nitrogen in Central European forests has changed fundamentally from limiting resource to environmental problem. As the retrospective tracking of nutrient availability by soil chemical and biogeochemical measurements faces serious problems, bioindication based on

  18. Impact of Slow Blood Filling via Collaterals on Infarct Growth: Comparison of Mismatch and Collateral Status

    Science.gov (United States)

    Son, Jeong Pyo; Lee, Mi Ji; Kim, Suk Jae; Chung, Jong-Won; Cha, Jihoon; Kim, Gyeong-Moon; Chung, Chin-Sang; Lee, Kwang Ho; Bang, Oh Young

    2017-01-01

    Background and Purpose Perfusion-diffusion mismatch has been evaluated to determine whether the presence of a target mismatch helps to identify patients who respond favorably to recanalization therapies. We compared the impact on infarct growth of collateral status and the presence of a penumbra, using magnetic resonance perfusion (MRP) techniques. Methods Consecutive patients who were candidates for recanalization therapy and underwent serial diffusion-weighted imaging (DWI) and MRP were enrolled. A collateral flow map derived from MRP source data was generated by automatic post-processing. The impact of a target mismatch (Tmax>6 s/apparent diffusion coefficient (ADC) volume≥1.8, ADC volume10 s for ADC volume<100 mL) on infarct growth was compared with MR-based collateral grading on day 7 DWI, using multivariate linear regression analysis. Results Among 73 patients, 55 (75%) showed a target mismatch, whereas collaterals were poor in 14 (19.2%), intermediate in 36 (49.3%), and good in 23 (31.5%) patients. After adjusting for initial severity of stroke, early recanalization (P<0.001) and the MR-based collateral grading (P=0.001), but not the presence of a target mismatch, were independently associated with infarct growth. Even in patients with a target mismatch and successful recanalization, the degree of infarct growth depended on the collateral status. Perfusion status at later Tmax time points (beyond the arterial phase) was more closely correlated with collateral status. Conclusions Patients with good collaterals show a favorable outcome in terms of infarct growth, regardless of the presence of a target mismatch pattern. The presence of slow blood filling predicts collateral status and infarct growth. PMID:28030891

  19. Kauffman's adjacent possible in word order evolution

    CERN Document Server

    Ferrer-i-Cancho, Ramon

    2015-01-01

    Word order evolution has been hypothesized to be constrained by a word order permutation ring: transitions involving orders that are closer in the permutation ring are more likely. The hypothesis can be seen as a particular case of Kauffman's adjacent possible in word order evolution. Here we consider the problem of the association of the six possible orders of S, V and O to yield a couple of primary alternating orders as a window to word order evolution. We evaluate the suitability of various competing hypotheses to predict one member of the couple from the other with the help of information theoretic model selection. Our ensemble of models includes a six-way model that is based on the word order permutation ring (Kauffman's adjacent possible) and another model based on the dual two-way of standard typology, that reduces word order to basic orders preferences (e.g., a preference for SV over VS and another for SO over OS). Our analysis indicates that the permutation ring yields the best model when favoring pa...

  20. Eukaryotic Mismatch Repair in Relation to DNA Replication.

    Science.gov (United States)

    Kunkel, Thomas A; Erie, Dorothy A

    2015-01-01

    Three processes act in series to accurately replicate the eukaryotic nuclear genome. The major replicative DNA polymerases strongly prevent mismatch formation, occasional mismatches that do form are proofread during replication, and rare mismatches that escape proofreading are corrected by mismatch repair (MMR). This review focuses on MMR in light of increasing knowledge about nuclear DNA replication enzymology and the rate and specificity with which mismatches are generated during leading- and lagging-strand replication. We consider differences in MMR efficiency in relation to mismatch recognition, signaling to direct MMR to the nascent strand, mismatch removal, and the timing of MMR. These studies are refining our understanding of relationships between generating and repairing replication errors to achieve accurate replication of both DNA strands of the nuclear genome.

  1. Modeller subjectivity and calibration impacts on hydrological model applications: an event-based comparison for a road-adjacent catchment in south-east Norway.

    Science.gov (United States)

    Kalantari, Zahra; Lyon, Steve W; Jansson, Per-Erik; Stolte, Jannes; French, Helen K; Folkeson, Lennart; Sassner, Mona

    2015-01-01

    Identifying a 'best' performing hydrologic model in a practical sense is difficult due to the potential influences of modeller subjectivity on, for example, calibration procedure and parameter selection. This is especially true for model applications at the event scale where the prevailing catchment conditions can have a strong impact on apparent model performance and suitability. In this study, two lumped models (CoupModel and HBV) and two physically-based distributed models (LISEM and MIKE SHE) were applied to a small catchment upstream of a road in south-eastern Norway. All models were calibrated to a single event representing typical winter conditions in the region and then applied to various other winter events to investigate the potential impact of calibration period and methodology on model performance. Peak flow and event-based hydrographs were simulated differently by all models leading to differences in apparent model performance under this application. In this case-study, the lumped models appeared to be better suited for hydrological events that differed from the calibration event (i.e., events when runoff was generated from rain on non-frozen soils rather than from rain and snowmelt on frozen soil) while the more physical-based approaches appeared better suited during snowmelt and frozen soil conditions more consistent with the event-specific calibration. This was due to the combination of variations in subsurface conditions over the eight events considered, the subsequent ability of the models to represent the impact of the conditions (particularly when subsurface conditions varied greatly from the calibration event), and the different approaches adopted to calibrate the models. These results indicate that hydrologic models may not only need to be selected on a case-by-case basis but also have their performance evaluated on an application-by-application basis since how a model is applied can be equally important as inherent model structure.

  2. Adjacent-level arthroplasty following cervical fusion.

    Science.gov (United States)

    Rajakumar, Deshpande V; Hari, Akshay; Krishna, Murali; Konar, Subhas; Sharma, Ankit

    2017-02-01

    -up period. CONCLUSIONS Artificial cervical disc replacement in patients who have previously undergone cervical fusion surgery appears to be safe, with encouraging early clinical results based on this small case series, but more data from larger numbers of patients with long-term follow-up are needed. Arthroplasty may provide an additional tool for the management of post-fusion adjacent-level cervical disc disease in carefully selected patients.

  3. Characterization of PolyA and PolyC mismatches by Raman spectroscopy

    Institute of Scientific and Technical Information of China (English)

    Yubo Liao; Yaoyong Meng; Haodong Lei; Ying Wang

    2008-01-01

    A.C mismatches are studied by Raman spectral characterization of PolyA, PolyC, and their equimolar complex in solution of 0.14 mol/L Na+,pH7.0.Experimental results show that A·C mismatches occur to be A/B (mainly A) conformers, and unlike Watson-Crick base pairing, this kind of mismatches is stabilized by only one hydrogen bond involving cytosine N4H2 and adenine N7.The formation of A·C complex makes the base stacking interactions much stronger, and conformation of the backbone more ordered, which leads to obvious Raman hypochromic effect with some shifts in corresponding bands.

  4. 收缩域紧邻挖掘的高可靠性网络安全防护%Reliable Security Protection of Network Based on Shrink Domain Adjacent Mining

    Institute of Scientific and Technical Information of China (English)

    杨波

    2014-01-01

    The network security was the most important things to be solved in the development of network. In traditional net-work security protection system, the protection capability was limited by the old method, when the network attack type was diversification, the security protection performance declined significantly. The reliable security protection of network was proposed based on shrink domain adjacent mining, the contractions domain adjacent mining method was used for all the da-ta fusion intrusion, the specific features were extracted, and the intrusion database was established, with which, the iterative method maximize system protection performance was achieved. A set of simulated attack data was used for testing experi-mental, and the result shows that with the shrink domain adjacent mining method, the safety protection system to biodiver-sity data in large quantities is achieved, so it has good engineering value for application.%网络安全防护是网络发展必须解决的问题,传统的网络安全防护系统防护能力有限,当网络攻击类型多样化时,安全防护性能大大下降。提出一种基于收缩域紧邻挖掘的高可靠性网络安全防护系统,在安全防护时,采用收缩域紧邻挖掘的方法对所有的入侵数据进行融合处理,提取出具体特征,建立入侵数据库,采用迭代方法最大限度地提高系统防护性能,最后采用一组模拟的攻击数据进行测试实验,结果显示,基于收缩域紧邻挖掘的安全防护系统能够在大批量多样性数据入侵时实现很好的安全防护,具有很好的工程使用价值。

  5. 基于表面邻接约束的交互式文物碎片重组%Interactive Reassembly of Fractured Fragments Based on Surface Adjacency Constraint

    Institute of Scientific and Technical Information of China (English)

    李姗姗; 耿国华; 周明全; 李姬俊男

    2016-01-01

    为了有效地解决文物虚拟复原中因断裂部位表面受损严重而造成的几何特征缺失,导致已有的模型重组方法失效的问题,提出一种基于文物模型表面纹饰几何特征的交互式破损文物重组方法。首先通过生成显示脊线得到碎片表面纹饰的几何结构和主动轮廓线;然后领域专家根据几何纹饰的连贯性确定待拼合碎片的邻接关系,并给出初始位置及碎片的表面邻接约束,采用区域生长方法确定表面邻接约束点的最终位置;再以表面邻接约束点为中心获取初始匹配点集,并采用线段约束筛选出待拼合碎片间的最优匹配点对集;最后采用基于穷举搜索的形状匹配方法计算刚体变换,实现碎片拼合。实验结果表明,该方法能够实现复杂碎片的准确拼合。%Based on the geometric features of models’ surface decoration, this paper presents a new interac-tive approach to assemble the fractured fragments. The fractured surfaces of these fragments have been se-verely damaged, which leads to great challenges to previous methods. First, the geometric structure of mod-els’ surfaces is obtained by generating apparent ridges. Then, according to the continuity of geometric structure of models’ surface decoration, user can determine the adjacency relationship of the fragments and define the surface adjacency constraints. A region growing strategy is employed to find the correct location of surface adjacency constraint point, then the initial matching points are obtained at the center of this point. After that, the optimal matching points are selected by the line segment constraint. In order to complete the registration of matching models, a shape matching method is proposed to calculate the rigid motion. We present some successful uses of our framework on some fragments of the terracotta warriors.

  6. Barbed Congruence of Asymmetry and Mismatch

    Institute of Scientific and Technical Information of China (English)

    Xiao-Ju Dong; Yu-Xi Fu

    2007-01-01

    The X calculus is a model of concurrent and mobile systems. It emphasizes that communications are information exchanges. In the paper, two constructions are incorporated into the framework of the chi calculus, which are asymmetric communication and mismatch condition widely used in applications. Since the barbed bisimilarity has proved its generality and gained its popularity as an effective approach to generating a reasonable observational equivalence, we study both the operational and algebraic properties of the barbed bisimilarity in this enriched calculus. The investigation supports an improved understanding of the bisimulation behaviors of the model. It also gives a general picture of how the two constructions affect the observational theory.

  7. Visual mismatch negativity: A predictive coding view

    Directory of Open Access Journals (Sweden)

    Gabor eStefanics

    2014-09-01

    Full Text Available An increasing number of studies investigate the visual mismatch negativity (vMMN or use the vMMN as a tool to probe various aspects of human cognition. This paper reviews the theoretical underpinnings of vMMN in the light of methodological considerations and provides recommendations for measuring and interpreting the vMMN. The following key issues are discussed from the experimentalist’s point of view in a predictive coding framework: 1 experimental protocols and procedures to control ‘refractoriness’ effects; 2 methods to control attention; 3 vMMN and veridical perception.

  8. A non-canonical mismatch repair pathway in prokaryotes

    Science.gov (United States)

    Castañeda-García, A.; Prieto, A. I.; Rodríguez-Beltrán, J.; Alonso, N.; Cantillon, D.; Costas, C.; Pérez-Lago, L.; Zegeye, E. D.; Herranz, M.; Plociński, P.; Tonjum, T.; García de Viedma, D.; Paget, M.; Waddell, S. J.; Rojas, A. M.; Doherty, A. J.; Blázquez, J.

    2017-01-01

    Mismatch repair (MMR) is a near ubiquitous pathway, essential for the maintenance of genome stability. Members of the MutS and MutL protein families perform key steps in mismatch correction. Despite the major importance of this repair pathway, MutS–MutL are absent in almost all Actinobacteria and many Archaea. However, these organisms exhibit rates and spectra of spontaneous mutations similar to MMR-bearing species, suggesting the existence of an alternative to the canonical MutS–MutL-based MMR. Here we report that Mycobacterium smegmatis NucS/EndoMS, a putative endonuclease with no structural homology to known MMR factors, is required for mutation avoidance and anti-recombination, hallmarks of the canonical MMR. Furthermore, phenotypic analysis of naturally occurring polymorphic NucS in a M. smegmatis surrogate model, suggests the existence of M. tuberculosis mutator strains. The phylogenetic analysis of NucS indicates a complex evolutionary process leading to a disperse distribution pattern in prokaryotes. Together, these findings indicate that distinct pathways for MMR have evolved at least twice in nature. PMID:28128207

  9. Repair of mismatched basepairs in mammalian DNA

    Energy Technology Data Exchange (ETDEWEB)

    Taylor, J.H.; Hare, J.T.

    1991-08-01

    We have concentrated on three specific areas of our research plan. Our greatest emphasis is on the role of single strand nicks in influencing template strand selection in mismatch repair. We have found, that the ability of a nick in one strand to influence which strand is repaired is not a simple function of distance from the mismatched site but rather that an hot spot where a nick is more likely to have an influence can exist. The second line was production of single-genotype heteroduplexes in order to examine independently the repair of T/G and A/C mispairs within the same sequence context as in our mixed mispair preparations. We have shown preparations of supercoiled heteroduplex can be prepared that were exclusively T/G or exclusively A/C at the mispair site. The third effort has been to understand the difference in repair bias of different cell lines or different transfection conditions as it may relate to different repair systems in the cell. We have identified some of the sources of variation, including cell cycle position. We hope to continue this work to more precisely identify the phase of the cell cycle.

  10. Scale Mismatches in Management of Urban Landscapes

    Directory of Open Access Journals (Sweden)

    Christine Alfsen-Norodom

    2006-12-01

    Full Text Available Urban landscapes constitute the future environment for most of the world’s human population. An increased understanding of the urbanization process and of the effects of urbanization at multiple scales is, therefore, key to ensuring human well-being. In many conventional natural resource management regimes, incomplete knowledge of ecosystem dynamics and institutional constraints often leads to institutional management frameworks that do not match the scale of ecological patterns and processes. In this paper, we argue that scale mismatches are particularly pronounced in urban landscapes. Urban green spaces provide numerous important ecosystem services to urban citizens, and the management of these urban green spaces, including recognition of scales, is crucial to the well-being of the citizens. From a qualitative study of the current management practices in five urban green spaces within the Greater Stockholm Metropolitan Area, Sweden, we found that 1 several spatial, temporal, and functional scales are recognized, but the cross-scale interactions are often neglected, and 2 spatial and temporal meso-scales are seldom given priority. One potential effect of the neglect of ecological cross-scale interactions in these highly fragmented landscapes is a gradual reduction in the capacity of the ecosystems to provide ecosystem services. Two important strategies for overcoming urban scale mismatches are suggested: 1 development of an integrative view of the whole urban social–ecological landscape, and 2 creation of adaptive governance systems to support practical management.

  11. Compressed Adjacency Matrices: Untangling Gene Regulatory Networks.

    Science.gov (United States)

    Dinkla, K; Westenberg, M A; van Wijk, J J

    2012-12-01

    We present a novel technique-Compressed Adjacency Matrices-for visualizing gene regulatory networks. These directed networks have strong structural characteristics: out-degrees with a scale-free distribution, in-degrees bound by a low maximum, and few and small cycles. Standard visualization techniques, such as node-link diagrams and adjacency matrices, are impeded by these network characteristics. The scale-free distribution of out-degrees causes a high number of intersecting edges in node-link diagrams. Adjacency matrices become space-inefficient due to the low in-degrees and the resulting sparse network. Compressed adjacency matrices, however, exploit these structural characteristics. By cutting open and rearranging an adjacency matrix, we achieve a compact and neatly-arranged visualization. Compressed adjacency matrices allow for easy detection of subnetworks with a specific structure, so-called motifs, which provide important knowledge about gene regulatory networks to domain experts. We summarize motifs commonly referred to in the literature, and relate them to network analysis tasks common to the visualization domain. We show that a user can easily find the important motifs in compressed adjacency matrices, and that this is hard in standard adjacency matrix and node-link diagrams. We also demonstrate that interaction techniques for standard adjacency matrices can be used for our compressed variant. These techniques include rearrangement clustering, highlighting, and filtering.

  12. Core Quadrant Power Tilt Induced by Control Rods Axial Position Mismatch

    Energy Technology Data Exchange (ETDEWEB)

    Son, Seungbeom; Lee, Changhee; Woo, Haeseuk; Jung, Yilsup [KEPCO Nuclear Fuel, Daejeon (Korea, Republic of); Kim, Yonghee [Korea Advanced Institute of Science and Technology, Daejeon (Korea, Republic of)

    2014-05-15

    If the limits are not met, plant operation should be restricted at various conditions. Actually, core quadrant power tilt in many nuclear power plants has been occurred frequently. This study deals with the various general causes of the core quadrant power tilt, including the control rods axial position mismatch induced quadrant power tilt problem. Based on the simulation results in each control rods axial position mismatch in a same control bank, it was found that some control rods axial position mismatch (simply around 10 steps difference) can induce quadrant power tilt relatively high (around 1.5%). With the other causes induced QPT, it may exceed the technical specification limit (2%). So it is needed to drive the control rods in detail during the operation including power change mode.

  13. Effect of the degree of polar mismatching on traffic jam formation in fast axonal transport.

    Science.gov (United States)

    Kuznetsov, A V

    2010-12-01

    This paper simulates an axon with a region of reversed microtubule (MT) polarity, and investigates how the degree of polar mismatching in this region affects the formation of organelle traps in the axon. The model is based on modified Smith-Simmons equations governing molecular-motor-assisted transport in neurons. It is established that the structure that develops as a result of a region with disoriented MTs consists of two organelle traps, the trap to the left of this region accumulates plus-end-oriented organelles and the trap to the right of this region accumulates minus-end-oriented organelles. The presence of such a structure is shown to inhibit the transport of organelles down the axon. The degree by which the transport of organelles is inhibited depends on the degree of polar mismatching of MTs in the region between MT traps. Four cases with a different degree of polar mismatching are investigated.

  14. Daytime Locations in Spatial Mismatch: Job Accessibility and Employment at Reentry From Prison.

    Science.gov (United States)

    Sugie, Naomi F; Lens, Michael C

    2017-04-01

    Individuals recently released from prison confront many barriers to employment. One potential obstacle is spatial mismatch-the concentration of low-skilled, nonwhite job-seekers within central cities and the prevalence of relevant job opportunities in outlying areas. Prior research has found mixed results about the importance of residential place for reentry outcomes. In this article, we propose that residential location matters for finding work, but this largely static measure does not capture the range of geographic contexts that individuals inhabit throughout the day. We combine novel, real-time GPS information on daytime locations and self-reported employment collected from smartphones with sophisticated measures of job accessibility to test the relative importance of spatial mismatch based on residence and daytime locations. Our findings suggest that the ability of low-skilled, poor, and urban individuals to compensate for their residential deficits by traveling to job-rich areas is an overlooked and salient consideration in spatial mismatch perspectives.

  15. Congestion Control for Multipath Transport Control Protocol Based on Compensating for RTT Mismatch%一种基于链路传输延迟的MPTCP拥塞控制算法

    Institute of Scientific and Technical Information of China (English)

    陶洋; 周莉; 刘鹏

    2013-01-01

    由于传统TCP拥塞控制算法直接应用到MPTCP(Multipath Transport Control Protocol)中存在公平性问题,以及不能有效地发挥多路径传输的优势,因而从公平性方面对MPTCP现有拥塞控制算法进行研究.研究发现,现有的MPTCP拥塞控制算法均受到相同的回路时间限制.提出一种基于链路延迟的RTT补偿算法(Compensating for RTT mismatch,C-RTT ).该算法通过设置网络带宽占用比参数以及对MPTCP连接的子流设置侵略因子,从而保证瓶颈链路处MPTCP数据流和TCP数据流公平地共享可用带宽.最后通过NS3仿真实验证明,该算法能够有效地补偿链路中因RTT不等引起的公平性问题,并避免链路之间数据的非周期抖动,且保证了多路径传输的优越性.%As the traditional TCP congestion control algorithm in the application of MPTCP (MultiPath Transport Control Protocol) existing fairness issue, and not effectively playing the advantage of multipath transmission, hence the issue of fairness on the bottleneck link in MPTCP congestion control algorithm is researched. Through the research, it is found that existing MPTCP congestion control algorithms are limited to the same round-trip time. In this paper, a new algorithm named Compensating for RTT mismatch is proposed, which by setting a parameter of network bandwidth occupancy, and setting a aggressiveness to subflow in order to ensure share available bandwidth between MPTCP data flow and TCP data flow fair at the bottleneck. Finally NS3 simulation results prove that the algorithm can compensate performance deterioration of the link due to the RTT mismatch, and avoid the link between non-cycle jitter, and ensure the superiority of the multi-path transmission.

  16. Resolution of Mismatched Overlap Holliday Junction Intermediates by the Tyrosine Recombinase IntDOT.

    Science.gov (United States)

    Ringwald, Kenneth; Yoneji, Sumiko; Gardner, Jeffrey

    2017-05-15

    CTnDOT is an integrated conjugative element found in Bacteroides species. CTnDOT contains and transfers antibiotic resistance genes. The element integrates into and excises from the host chromosome via a Holliday junction (HJ) intermediate as part of a site-specific recombination mechanism. The CTnDOT integrase, IntDOT, is a tyrosine recombinase with core-binding, catalytic, and amino-terminal (N) domains. Unlike well-studied tyrosine recombinases, such as lambda integrase (Int), IntDOT is able to resolve Holliday junctions containing heterology (mismatched bases) between the sites of strand exchange. All known natural isolates of CTnDOT contain mismatches in the overlap region between the sites of strand exchange. Previous work showed that IntDOT was unable to resolve synthetic Holliday junctions containing mismatched bases to products in the absence of the arm-type sites and a DNA-bending protein. We constructed synthetic HJs with the arm-type sites and tested them with the Bacteroides host factor (BHFa). We found that the addition of BHFa stimulated resolution of HJ intermediates with mismatched overlap regions to products. In addition, the L1 site is required for directionality of the reaction, particularly when the HJ contains mismatches. BHFa is required for product formation when the overlap region contains mismatches, and it stimulates resolution to products when the overlap region is identical. Without this DNA bending, the N domain of IntDOT is likely unable to bind the L1 arm-type site. These findings suggest that BHFa bends DNA into the necessary conformation for the higher-order complexes, including the L1 site, that are required for product formation.IMPORTANCE CTnDOT is a mobile element that carries antibiotic resistance genes and moves by site-selective recombination and subsequent conjugation. The recombination reaction is catalyzed by an integrase IntDOT that is a member of the tyrosine recombinase family. The reaction proceeds through ordered

  17. In-flight simulation with pilot-center of gravity offset and velocity mismatch

    Science.gov (United States)

    Stengel, R. F.

    1979-01-01

    Similarity transformations which preserve modal characteristics and pilot's acceleration cues in in-flight simulation are presented. The model transformation for lateral acceleration matching is developed. A velocity-mismatch example, based on a VRA simulation of the Space Shuttle, illustrates that acceleration matching is achieved at the expense of mismatching in cues which are secondary to the simulated piloting task, while primarily cues are preserved. The approach is applicable for both implicit and explicit model-following, and it can easily be extended to the longitudinal case.

  18. Epitaxial growth of largely mismatched crystals on H-terminated Si(111) surfaces.

    Science.gov (United States)

    Asaoka, Hidehito

    2010-12-01

    A strontium or strontium oxide epitaxial layer was grown using a monoatomic buffer layer of hydrogen on silicon, in spite of a huge lattice mismatch. The onset of the initial growth stage of strontium crystals occur with only one atomic layer deposition. To investigate the growth mechanism in the highly mismatched system, combination analysis using neutron reflection, reflection high-energy electron diffraction, x-ray photoelectron spectra, and stress measurements is employed. The interface structure has opened up a new way to fabricate novel heterostructures, consisting of various kinds of one-, two- or three-dimensional materials for future silicon-based technology.

  19. Convergent transmission of RNAi guide-target mismatch information across Argonaute internal allosteric network.

    Directory of Open Access Journals (Sweden)

    Thomas T Joseph

    Full Text Available In RNA interference, a guide strand derived from a short dsRNA such as a microRNA (miRNA is loaded into Argonaute, the central protein in the RNA Induced Silencing Complex (RISC that silences messenger RNAs on a sequence-specific basis. The positions of any mismatched base pairs in an miRNA determine which Argonaute subtype is used. Subsequently, the Argonaute-guide complex binds and silences complementary target mRNAs; certain Argonautes cleave the target. Mismatches between guide strand and the target mRNA decrease cleavage efficiency. Thus, loading and silencing both require that signals about the presence of a mismatched base pair are communicated from the mismatch site to effector sites. These effector sites include the active site, to prevent target cleavage; the binding groove, to modify nucleic acid binding affinity; and surface allosteric sites, to control recruitment of additional proteins to form the RISC. To examine how such signals may be propagated, we analyzed the network of internal allosteric pathways in Argonaute exhibited through correlations of residue-residue interactions. The emerging network can be described as a set of pathways emanating from the core of the protein near the active site, distributed into the bulk of the protein, and converging upon a distributed cluster of surface residues. Nucleotides in the guide strand "seed region" have a stronger relationship with the protein than other nucleotides, concordant with their importance in sequence selectivity. Finally, any of several seed region guide-target mismatches cause certain Argonaute residues to have modified correlations with the rest of the protein. This arises from the aggregation of relatively small interaction correlation changes distributed across a large subset of residues. These residues are in effector sites: the active site, binding groove, and surface, implying that direct functional consequences of guide-target mismatches are mediated through the

  20. Convergent Transmission of RNAi Guide-Target Mismatch Information across Argonaute Internal Allosteric Network

    Science.gov (United States)

    Joseph, Thomas T.; Osman, Roman

    2012-01-01

    In RNA interference, a guide strand derived from a short dsRNA such as a microRNA (miRNA) is loaded into Argonaute, the central protein in the RNA Induced Silencing Complex (RISC) that silences messenger RNAs on a sequence-specific basis. The positions of any mismatched base pairs in an miRNA determine which Argonaute subtype is used. Subsequently, the Argonaute-guide complex binds and silences complementary target mRNAs; certain Argonautes cleave the target. Mismatches between guide strand and the target mRNA decrease cleavage efficiency. Thus, loading and silencing both require that signals about the presence of a mismatched base pair are communicated from the mismatch site to effector sites. These effector sites include the active site, to prevent target cleavage; the binding groove, to modify nucleic acid binding affinity; and surface allosteric sites, to control recruitment of additional proteins to form the RISC. To examine how such signals may be propagated, we analyzed the network of internal allosteric pathways in Argonaute exhibited through correlations of residue-residue interactions. The emerging network can be described as a set of pathways emanating from the core of the protein near the active site, distributed into the bulk of the protein, and converging upon a distributed cluster of surface residues. Nucleotides in the guide strand “seed region” have a stronger relationship with the protein than other nucleotides, concordant with their importance in sequence selectivity. Finally, any of several seed region guide-target mismatches cause certain Argonaute residues to have modified correlations with the rest of the protein. This arises from the aggregation of relatively small interaction correlation changes distributed across a large subset of residues. These residues are in effector sites: the active site, binding groove, and surface, implying that direct functional consequences of guide-target mismatches are mediated through the cumulative

  1. 中国超大城市常住外来和常住户籍人口居住-就业的空间错位--基于北京、上海和广州的实证%Jobs-Housing Spatial Mismatch of Permanent Immigrants and Local Registered Residents in Chinese Metropolises:An Empirical Study Based on Beijing, Shanghai and Guangzhou

    Institute of Scientific and Technical Information of China (English)

    孙铁山; 刘霄泉

    2016-01-01

    以北京、上海、广州作为中国超大城市的代表,探讨中国超大城市常住外来和常住户籍人口居住-就业空间错位的差异及其影响因素。总体而言,常住外来人口的居住-就业空间错位要高于常住户籍人口,且不同户籍属性人口的错位形态存在差异。分行业来看,公共管理和社会组织等公共服务业常住外来人口居住-就业空间错位程度相对较高,而制造业、居民服务和其他服务业常住户籍人口居住-就业空间错位程度相对较高。由计量分析发现,住房价格水平、就业集聚规模、高端产业比重和地区地方财政支出对不同户籍属性人口就业-居住空间分布差异均产生相似的影响;而租赁户数比重和低端产业比重对不同户籍属性人口的就业-居住空间分布则产生差异性的影响。%Based on the population census data and the economic census data of Beijing, Shanghai and Guangzhou, this paper empirically analyzes the differences between permanent immigrants and local registered residents on the jobs⁃housing spatial mismatch in Chinese metropolises. Overall, the jobs⁃housing spatial mismatch among the permanent immigrants is more severe than that among the local registered residents, and people with different household registrations exhibit different spatial mismatch patterns. Specifically, the permanent immigrants excessively concentrate in the inner suburbs while local registered residents show excessive concentration of residences in the outer suburbs, although jobs are excessively concentrated in the central city for both the immigrants and the local residents. Besides, people from different sectors also exhibit different spatial mismatch patterns. Compared to the local residents, the permanent immigrants show higher spatial mismatch in such sectors as public management and social organization, education, while they show lower spatial mismatch in such sectors

  2. Mismatch repair genes of Streptococcus pneumoniae: HexA confers a mutator phenotype in Escherichia coli by negative complementation.

    OpenAIRE

    Prudhomme, M; Méjean, V; Martin, B; Claverys, J P

    1991-01-01

    DNA repair systems able to correct base pair mismatches within newly replicated DNA or within heteroduplex molecules produced during recombination are widespread among living organisms. Evidence that such generalized mismatch repair systems evolved from a common ancestor is particularly strong for two of them, the Hex system of the gram-positive Streptococcus pneumoniae and the Mut system of the gram-negative Escherichia coli and Salmonella typhimurium. The homology existing between HexA and ...

  3. Skill mismatch and use in developed countries: Evidence from the PIAAC study

    NARCIS (Netherlands)

    Allen, J.P.; Levels, M.; van der Velden, R.K.W.

    2013-01-01

    In this paper we develop and test a new set of measures of skill mismatches, based on data on skill levels and skill use in the domains of literacy and numeracy from the PIAAC project. The measures we develop represent the extent of skill use relative to one’s own skill level. We test the measures b

  4. Labour Market Mismatch among UK Graduates: An Analysis Using REFLEX Data

    Science.gov (United States)

    McGuinness, Seamus; Sloane, Peter J.

    2011-01-01

    There is much disagreement in the literature over the extent to which graduates are mismatched in the labour market and the reasons for this. In this paper we utilise the Flexible Professional in the Knowledge Society (REFLEX) data set to cast light on these issues, based on data for UK graduates. We find substantial pay penalties for…

  5. L-band AlGaN/GaN Power Amplifier with Protection Against Load Mismatch

    NARCIS (Netherlands)

    Heijningen, M. van; Bent, G. van der; Houwen, E.H. van der; Chowdhary, A.; Vliet, F.E. van

    2013-01-01

    Solid-state power amplifiers need protection at the output to handle high reflections due to mismatch. Normally this is implemented by using a ferrite-based isolator. These are however large and bulky components. This paper presents a Gallium-Nitride power amplifier module with automatic protection

  6. Labour Market Mismatch among UK Graduates: An Analysis Using REFLEX Data

    Science.gov (United States)

    McGuinness, Seamus; Sloane, Peter J.

    2011-01-01

    There is much disagreement in the literature over the extent to which graduates are mismatched in the labour market and the reasons for this. In this paper we utilise the Flexible Professional in the Knowledge Society (REFLEX) data set to cast light on these issues, based on data for UK graduates. We find substantial pay penalties for…

  7. Supply-demand mismatch transients in susceptible peri-infarct hot zones explain the origin of spreading injury depolarizations

    Science.gov (United States)

    von Bornstädt, Daniel; Houben, Thijs; Seidel, Jessica; Zheng, Yi; Dilekoz, Ergin; Qin, Tao; Sandow, Nora; Kura, Sreekanth; Eikermann-Haerter, Katharina; Endres, Matthias; Boas, David A.; Moskowitz, Michael A.; Lo, Eng H.; Dreier, Jens P.; Woitzik, Johannes; Sakadžić, Sava; Ayata, Cenk

    2015-01-01

    SUMMARY Peri-infarct depolarizations (PIDs) are seemingly spontaneous spreading depression-like waves that negatively impact tissue outcome in both experimental and human stroke. Factors triggering PIDs are unknown. Here, we show that somatosensory activation of peri-infarct cortex triggers PIDs when the activated cortex is within a critical range of ischemia. We show that the mechanism involves increased oxygen utilization within the activated cortex, worsening the supply-demand mismatch. We support the concept by clinical data showing that mismatch predisposes to PIDs in human stroke as well. Conversely, transient worsening of mismatch by episodic hypoxemia or hypotension also reproducibly triggers PIDs. Therefore, PIDs are triggered upon supply-demand mismatch transients in metastable peri-infarct hot zones due to increased demand or reduced supply. Based on the data, we propose that minimizing sensory stimulation and hypoxic or hypotensive transients in stroke and brain injury would reduce PID incidence and their adverse impact on outcome. PMID:25741731

  8. On Capacity Regions of Interference Channels with Mismatched Local Views

    CERN Document Server

    Kao, David T -H

    2011-01-01

    We study the capacity regions of two-user interference channels where transmitters base their transmission decisions on local views of the channel state. Under the local view model, each transmitter knows only a subset of the four channel gains, which may be mismatched from the other transmitter. We consider a set of seven local views, and find that for five out of the seven local views, TDMA is sufficient to achieve the capacity region of the deterministic interference channel. Conversely for these five views, no policy can achieve a rate point outside the TDMA region without inducing a corner case of sub-TDMA performance in another channel state. The common trait shared by the two remaining local views - those with the potential to outperform TDMA - is transmitter knowledge of the outgoing interference link, emphasizing its importance in creating opportunities to use more advanced schemes. Our conclusions are extended to bounded gap characterizations of the capacity region for the Gaussian interference chan...

  9. Structural Study of Mismatched Disila-Crown Ether Complexes

    Directory of Open Access Journals (Sweden)

    Kirsten Reuter

    2017-02-01

    Full Text Available Mismatched complexes of the alkali metals cations Li+ and Na+ were synthesized from 1,2-disila[18]crown-6 (1 and 2 and of K+ from 1,2,4,5-tetrasila[18]crown-6 (4. In these alkali metal complexes, not all crown ether O atoms participate in the coordination, which depicts the coordination ability of the C-, Si/C-, and Si-bonded O atoms. Furthermore, the inverse case—the coordination of the large Ba2+ ion by the relatively small ligand 1,2-disila[15]crown-5—was investigated, yielding the dinuclear complex 5. This structure represents a first outlook on sandwich complexes based on hybrid crown ethers.

  10. Optimizing the Face Paradigm of BCI System by Modified Mismatch Negative Paradigm

    Science.gov (United States)

    Zhou, Sijie; Jin, Jing; Daly, Ian; Wang, Xingyu; Cichocki, Andrzej

    2016-01-01

    Many recent studies have focused on improving the performance of event-related potential (ERP) based brain computer interfaces (BCIs). The use of a face pattern has been shown to obtain high classification accuracies and information transfer rates (ITRs) by evoking discriminative ERPs (N200 and N400) in addition to P300 potentials. Recently, it has been proved that the performance of traditional P300-based BCIs could be improved through a modification of the mismatch pattern. In this paper, a mismatch inverted face pattern (MIF-pattern) was presented to improve the performance of the inverted face pattern (IF-pattern), one of the state of the art patterns used in visual-based BCI systems. Ten subjects attended in this experiment. The result showed that the mismatch inverted face pattern could evoke significantly larger vertex positive potentials (p < 0.05) and N400s (p < 0.05) compared to the inverted face pattern. The classification accuracy (mean accuracy is 99.58%) and ITRs (mean bit rate is 27.88 bit/min) of the mismatch inverted face pattern was significantly higher than that of the inverted face pattern (p < 0.05). PMID:27774046

  11. Optimizing the face Paradigm of BCI system by modified Mismatch Negative paradigm

    Directory of Open Access Journals (Sweden)

    Siejie Zhou

    2016-10-01

    Full Text Available Many recent studies have focused on improving the performance of event-related potential (ERP based brain computer interfaces (BCIs. The use of a face pattern has been shown to obtain high classification accuracies and information transfer rates (ITRs by evoking discriminative ERPs (N200 and N400 in addition to P300 potentials. Recently, it has been proved that the performance of traditional P300-based BCIs could be improved through a modification of the mismatch pattern. In this paper, a mismatch inverted face pattern (MIF-pattern was presented to improve the performance of the inverted face pattern (IF-pattern, one of the state of the art patterns used in visual-based BCI systems. Ten subjects attended in this experiment. The result showed that the mismatch inverted face pattern could evoke significantly larger vertex positive potentials (p<0.05 and N400s (p<0.05 compared to the inverted face pattern. The classification accuracy (mean accuracy is 99.58% and ITRs (mean bit rate is 27.88 bit/min of the mismatch inverted face pattern was significantly higher than that of the inverted face pattern (p<0.05.

  12. Mismatch Analysis of TAB-on-Glass Connection With ACF

    Science.gov (United States)

    2000-07-01

    element model be used in the mismatch analysis if a more accurate prediction of OLB mismatch is desired. REFERENCES 1. H. Atarashi, N. Kakimoto , H...Yamamura, N. Kakimoto , K. Naitoh, and T. Nukii, "Bare-chip face-down bonding technology using conductive particles and lightsetting adhesives:ELASTIC

  13. Influence of halo doping profiles on MOS transistor mismatch

    NARCIS (Netherlands)

    Andricciola, P.; Tuinhout, H.

    2009-01-01

    Halo implants are used in modern CMOS technology to reduce the short channel effect. However, the lateral non-uniformity of the channel doping has been proven to degenerate the mismatch performance. With this paper we want to discuss the influence of the halo profile on MOS transistor mismatch. The

  14. Mismatch-Shaped Pseudo-Passive Two-Capacitor DAC

    DEFF Research Database (Denmark)

    Steensgaard-Madsen, Jesper; Moon, Un-Ku; Temes, Gabor C.

    1999-01-01

    A simple mismatch-shaping scheme is proposed for a two-capacitor DAC. Unlike in other mismatch-shaping systems, the shaped error is generated by direct filtering of a well-defined bounded signal, which can be generated as white noise. The operation is closely related to a specific digital interpo...

  15. Mismatch-Shaping Serial Digital-to-Analog Converter

    DEFF Research Database (Denmark)

    Steensgaard-Madsen, Jesper; Moon, Un-Ku; Temes, Gabor C.

    1999-01-01

    A simple but accurate pseudo-passive mismatch-shaping D/A converter is described. A digital state machine is used to control the switching sequence of a symmetric two-capacitor network that performs the D/A conversion. The error caused by capacitor mismatch is uncorrelated with the input signal a...

  16. Speaking Self-Assessment: Mismatches between Learners' and Teachers' Criteria

    Science.gov (United States)

    Babaii, Esmat; Taghaddomi, Shahin; Pashmforoosh, Roya

    2016-01-01

    Perceptual (mis)matches between teachers and learners are said to affect learning success or failure. Self-assessment, as a formative assessment tool, may, inter alia, be considered a means to minimize such mismatches. Therefore, the present study investigated the extent to which learners' assessment of their own speaking performance, before and…

  17. Educational Mismatch of Graduates: A Multidimensional and Fuzzy Indicator

    Science.gov (United States)

    Betti, Gianni; D'Agostino, Antonella; Neri, Laura

    2011-01-01

    In this paper we attempt to measure the educational mismatch, seen as a problem of overeducation, using a multidimensional and fuzzy methodology. Educational mismatch can be difficult to measure because many factors can converge to its definition and the traditional unidimensional indicators presented in literature can offer a restricted view of…

  18. Hippocampal Mismatch Signals Are Modulated by the Strength of Neural Predictions and Their Similarity to Outcomes.

    Science.gov (United States)

    Long, Nicole M; Lee, Hongmi; Kuhl, Brice A

    2016-12-14

    The hippocampus is thought to compare predicted events with current perceptual input, generating a mismatch signal when predictions are violated. However, most prior studies have only inferred when predictions occur without measuring them directly. Moreover, an important but unresolved question is whether hippocampal mismatch signals are modulated by the degree to which predictions differ from outcomes. Here, we conducted a human fMRI study in which subjects repeatedly studied various word-picture pairs, learning to predict particular pictures (outcomes) from the words (cues). After initial learning, a subset of cues was paired with a novel, unexpected outcome, whereas other cues continued to predict the same outcome. Critically, when outcomes changed, the new outcome was either "near" to the predicted outcome (same visual category as the predicted picture) or "far" from the predicted outcome (different visual category). Using multivoxel pattern analysis, we indexed cue-evoked reactivation (prediction) within neocortical areas and related these trial-by-trial measures of prediction strength to univariate hippocampal responses to the outcomes. We found that prediction strength positively modulated hippocampal responses to unexpected outcomes, particularly when unexpected outcomes were close, but not identical, to the prediction. Hippocampal responses to unexpected outcomes were also associated with a tradeoff in performance during a subsequent memory test: relatively faster retrieval of new (updated) associations, but relatively slower retrieval of the original (older) associations. Together, these results indicate that hippocampal mismatch signals reflect a comparison between active predictions and current outcomes and that these signals are most robust when predictions are similar, but not identical, to outcomes. Although the hippocampus is widely thought to signal "mismatches" between memory-based predictions and outcomes, previous research has not linked

  19. High rate of mismatch extension during reverse transcription in a single round of retrovirus replication.

    Science.gov (United States)

    Pulsinelli, G A; Temin, H M

    1994-09-27

    We made spleen necrosis virus-based retroviral vectors with mutations at the 3' end of the primer binding site region to observe the effects of terminal mismatches on retroviral replication. These vectors, when compared to a vector with the wild-type primer binding sequence, allowed us to assay the effects of the mutations on the viral titer during a single cycle of replication. The mutant vectors had titers that were comparable to the wild-type vector, indicating that reverse transcriptase has no trouble extending mismatches of as many as 3 bases under normal in vivo conditions. These results confirm and extend previous in vitro studies [Yu, H. & Goodman, M. (1992) J. Biol. Chem. 15, 10888-10896] that showed that such mismatch extension could occur in a cell-free system at high concentrations of incorrect nucleotides and in the absence of correct nucleotides. We now show that mismatch extension can occur during normal retroviral replication in cells and at normal physiological nucleotide concentrations.

  20. Phenological mismatch and the effectiveness of assisted gene flow.

    Science.gov (United States)

    Wadgymar, Susana M; Weis, Arthur E

    2017-06-01

    The persistence of narrowly adapted species under climate change will depend on their ability to migrate apace with their historical climatic envelope or to adapt in place to maintain fitness. This second path to persistence can only occur if there is sufficient genetic variance for response to new selection regimes. Inadequate levels of genetic variation can be remedied through assisted gene flow (AGF), that is the intentional introduction of individuals genetically adapted to localities with historic climates similar to the current or future climate experienced by the resident population. However, the timing of reproduction is frequently adapted to local conditions. Phenological mismatch between residents and migrants can reduce resident × migrant mating frequencies, slowing the introgression of migrant alleles into the resident genetic background and impeding evolutionary rescue efforts. Focusing on plants, we devised a method to estimate the frequency of resident × migrant matings based on flowering schedules and applied it in an experiment that mimicked the first generation of an AGF program with Chamaecrista fasciculata, a prairie annual, under current and expected future temperature regimes. Phenological mismatch reduced the potential for resident × migrant matings by 40-90%, regardless of thermal treatment. The most successful migrant sires were the most resident like in their flowering time, further biasing the genetic admixture between resident and migrant populations. Other loci contributing to local adaptation-heat-tolerance genes, for instance-may be in linkage disequilibrium with phenology when residents and migrants are combined into a single mating pool. Thus, introgression of potentially adaptive migrant alleles into the resident genetic background is slowed when selection acts against migrant phenology. Successful AGF programs may require sustained high immigration rates or preliminary breeding programs when phenologically matched migrant

  1. Reducing measurement scale mismatch to improve surface energy flux estimation

    Science.gov (United States)

    Iwema, Joost; Rosolem, Rafael; Rahman, Mostaquimur; Blyth, Eleanor; Wagener, Thorsten

    2016-04-01

    Soil moisture importantly controls land surface processes such as energy and water partitioning. A good understanding of these controls is needed especially when recognizing the challenges in providing accurate hyper-resolution hydrometeorological simulations at sub-kilometre scales. Soil moisture controlling factors can, however, differ at distinct scales. In addition, some parameters in land surface models are still often prescribed based on observations obtained at another scale not necessarily employed by such models (e.g., soil properties obtained from lab samples used in regional simulations). To minimize such effects, parameters can be constrained with local data from Eddy-Covariance (EC) towers (i.e., latent and sensible heat fluxes) and Point Scale (PS) soil moisture observations (e.g., TDR). However, measurement scales represented by EC and PS still differ substantially. Here we use the fact that Cosmic-Ray Neutron Sensors (CRNS) estimate soil moisture at horizontal footprint similar to that of EC fluxes to help answer the following question: Does reduced observation scale mismatch yield better soil moisture - surface fluxes representation in land surface models? To answer this question we analysed soil moisture and surface fluxes measurements from twelve COSMOS-Ameriflux sites in the USA characterized by distinct climate, soils and vegetation types. We calibrated model parameters of the Joint UK Land Environment Simulator (JULES) against PS and CRNS soil moisture data, respectively. We analysed the improvement in soil moisture estimation compared to uncalibrated model simulations and then evaluated the degree of improvement in surface fluxes before and after calibration experiments. Preliminary results suggest that a more accurate representation of soil moisture dynamics is achieved when calibrating against observed soil moisture and further improvement obtained with CRNS relative to PS. However, our results also suggest that a more accurate

  2. [Avoidance of patient-prosthesis mismatch].

    Science.gov (United States)

    Sakamoto, Y; Hashimoto, K

    2006-04-01

    To minimize the incidence of patient-prosthesis mismatch (PPM), we have routinely adopted aortic root enlargement to avoid PPM for patients with small aortic annulus. The aim of this study was to review our strategy of avoiding PPM. The Carpentier-Edwards Perimount (CEP) valves were implanted in 53 patients who were mostly aged over 65 and the St. Jude Medical (SJM) mechanical valves were used in 128 patients aged under 65. A standard 21-mm SJM valve was used in only 3 patients and no 19-mm valves were employed. However, 19-mm CEP valves were used in 12 patients with a small body surface area (1.43 +/- 0.14 m2). Of these, 26 patients (14.4%) who had a small aortic annulus and 24 patients aged under 65 underwent aortic root enlargement. No patient receiving an SJM valve had an projected indexed effective orifice area (EOAI) small annulus, the first choice for avoiding PPM is aortic annular enlargement, which may be avoided by high performance mechanical valves with larger EOA.

  3. ROLE OF MISMATCH REPAIR PROTEINS IN THE PROCESSING OF CISPLATIN INTERSTRAND CROSS-LINKS

    Science.gov (United States)

    Sawant, Akshada; Kothandapani, Anbarasi; Zhitkovich, Anatoly; Sobol, Robert W.; Patrick, Steve M.

    2015-01-01

    Mismatch repair (MMR) deficiency gives rise to cisplatin resistance and can lead to poor prognosis in cancers. Various models have been proposed to explain this low level of resistance caused due to loss of MMR proteins. We have shown that MMR proteins are required to maintain cisplatin interstrand cross-links (ICLs) on the DNA leading to increased cellular sensitivity. In our previous studies, we have shown that BER processing of the cisplatin ICLs is mutagenic. Polymerase β (Polβ) can generate mismatches which leads to the activation and the recruitment of mismatch repair proteins. In this paper, we distinguished between the requirement of different downstream MMR proteins for maintaining cisplatin sensitivity. We show that the MutSα (MSH2-MSH6) heterocomplex is required to maintain cisplatin sensitivity, whereas the Mutsβ complex has no effect. These results can be correlated with the increased repair of cisplatin ICLs and ICL induced DNA double strand breaks (DSBs) in the resistant cells. Moreover, we show that MLH1 proficient cells displayed a cisplatin sensitive phenotype when compared with the MLH1 deficient cells and the ATPase activity of MLH1 is essential to mediate this effect. Based on these results, we propose that MutSα as well as the downstream MMR pathway proteins are essential to maintain a cisplatin sensitive phenotype as a consequence of processing Polβ induced mismatches at sites flanking cisplatin ICLs. PMID:26519826

  4. Strain compensation in a semiconducting device structure using an intentionally mismatched uniform buffer layer

    Science.gov (United States)

    Kujofsa, Tedi; Ayers, John E.

    2016-12-01

    The extent of strain relaxation in semiconducting device heterostructures has important implications in the design of high electron mobility transistors, light-emitting diodes, and laser diodes, in which the residual strain affects the device characteristics. In this work, we develop the theoretical framework for understanding strain compensation in a semiconductor device layer using a uniform buffer layer which can be intentionally mismatched to the material above. Specifically, we determined the critical condition for complete strain compensation in the device layer by intentionally introducing a compositional mismatch at the device-buffer interface. We present minimum energy calculations and show that for a given device layer with fixed mismatch and layer thickness, the buffer layer may be designed with the appropriate combination of thickness and mismatch such that the device layer will have zero residual strain in equilibrium. Such a structure can be referred to as a completely strain-compensated design. In the more general case, there may be partial strain compensation, and we give a simple physics-based Gaussian-type function describing the residual strain in the device layer. We have applied this general framework to In x Ga1-x As/GaAs (001) heterostructures for the purpose of illustration, but the work is applicable to any diamond or zinc blende (001) heteroepitaxial material system.

  5. 基于生态修复的青海湖沙柳河鱼道建设与维护%Construction and management of fish passage on Shaliu River adjacent to Qinghai Lake based on ecological restoration

    Institute of Scientific and Technical Information of China (English)

    吴晓春; 史建全

    2014-01-01

    为减少水坝对青海湖裸鲤溯河洄游的阻隔,在入湖的沙柳河上先后建设了导壁式、简易模块式和阶梯型鱼道。通过对青海湖鱼道建设案例分析,得出鱼道设计需要关注的问题:鱼道进鱼口设计要安排在鱼类洄游通路并采取集鱼措施,鱼道设计要依据鱼类洄游能力,鱼道运行要注意改进和维护,鱼道设计需要多学科专家共同参与。结合国内外鱼道设计、建设和运行情况,提出基于生态修复的鱼道建设维护对策:确立生态系统功能价值的鱼道设计目标,确立从鱼的角度出发,系统性的鱼道设计理念、建设和管护方式。%Gymnocypris przewalskii belongs to subfamily of Schizothoracinae, family of Cyprinidae and order of Cypriniformes, and it is an endemic species only distributed in the Qinghai Lake and its adjacent rivers and lakes. It possesses migration characteristics, and goes upstream from the lake to surrounding rivers in the reproduction season. However, several dams built on the rivers flowing into the lake with the agricultural development in the Qinghai Lake region since 1970s, severely blocked its migration passages, leading to obviously decreasing of resources of Gymnocypris przewalskii in recent years. To protect Gymnocypris przewalskii, three kinds of fish passages on the dams of rivers flowing into the Qinghai Lake were introduced, which were types of guide wall, simple steel modular and ladder slope, respectively. 1) The guide wall type fish passage was separately constructed on the dams in the Shaliu River, Quanji River and Haergai River in 2006, which were built along river side, but it had several defects because of the lack of experience. 2) The simple steel modular type fish passage was designed and constructed on the dam of the Shaliu River in 2008, Based on biological characteristics of Gymnocypris przewalskii and the basic situation of the dam and environmental conditions of the Shaliu

  6. Rodent Mismatch Negativity (MMN)/Theta Neuro-Oscillatory Response as a Translational Neurophysiological Biomarker for N-Methyl-D-Aspartate Receptor-Based New Treatment Development in Schizophrenia.

    Science.gov (United States)

    Lee, Migyung; Balla, Andrea; Sershen, Henry; Sehatpour, Pejman; Lakatos, Peter; Javitt, Daniel C

    2017-08-17

    Deficits in the generation of auditory mismatch negativity (MMN) generation are among the most widely replicated neurophysiological abnormalities in schizophrenia and linked to underlying dysfunction of N-methyl-D-aspartate receptor (NMDAR)-mediated neurotransmission. Here, we evaluate physiological properties of rodent MMN, along with sensitivity to NMDAR agonist and antagonist treatment, relative to known patterns of dysfunction in schizophrenia. Epidural neurophysiological responses to frequency- and duration-deviants, along with responses to standard stimuli, were obtained at baseline and following 2 and 4 weeks treatment from rats treated with saline, phencyclidine (PCP, 15 mg/kg/d by osmotic minipump), or PCP+glycine (16% by weight diet) interventions. Responses were analyzed using both event-related potential (ERP) and neuro-oscillatory (evoked power) approaches. At baseline, rodent duration MMN was associated with increased theta (θ)-frequency response similar to that observed in humans. PCP significantly reduced rodent duration MMN (p<0.001) and θ-band (p<0.01) response. PCP effects were prevented by concurrent glycine treatment (p<0.01 vs PCP alone). Effects related to stimulus-specific adaptation (SSA) were observed primarily in the alpha (α) and beta (β) frequency ranges. PCP-treatment also significantly reduced α-frequency response to standard stimuli while increasing θ-band response, reproducing the pattern of deficit observed in schizophrenia. Overall, we demonstrate that rodent duration MMN shows neuro-oscillatory signature similar to human MMN, along with sensitivity to the NMDAR antagonist and agonist administration. These findings reinforce recent human studies linking MMN deficits to θ-band neuro-oscillatory dysfunction and support utility of rodent duration MMN as a translational biomarker for investigation of mechanisms underlying impaired local circuit function in schizophrenia.Neuropsychopharmacology accepted article preview online

  7. Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays

    Directory of Open Access Journals (Sweden)

    Jee Justin

    2008-12-01

    Full Text Available Abstract Background Mismatched oligonucleotides are widely used on microarrays to differentiate specific from nonspecific hybridization. While many experiments rely on such oligos, the hybridization behavior of various degrees of mismatch (MM structure has not been extensively studied. Here, we present the results of two large-scale microarray experiments on S. cerevisiae and H. sapiens genomic DNA, to explore MM oligonucleotide behavior with real sample mixtures under tiling-array conditions. Results We examined all possible nucleotide substitutions at the central position of 36-nucleotide probes, and found that nonspecific binding by MM oligos depends upon the individual nucleotide substitutions they incorporate: C→A, C→G and T→A (yielding purine-purine mispairs are most disruptive, whereas A→X were least disruptive. We also quantify a marked GC skew effect: substitutions raising probe GC content exhibit higher intensity (and vice versa. This skew is small in highly-expressed regions (± 0.5% of total intensity range and large (± 2% or more elsewhere. Multiple mismatches per oligo are largely additive in effect: each MM added in a distributed fashion causes an additional 21% intensity drop relative to PM, three-fold more disruptive than adding adjacent mispairs (7% drop per MM. Conclusion We investigate several parameters for oligonucleotide design, including the effects of each central nucleotide substitution on array signal intensity and of multiple MM per oligo. To avoid GC skew, individual substitutions should not alter probe GC content. RNA sample mixture complexity may increase the amount of nonspecific hybridization, magnify GC skew and boost the intensity of MM oligos at all levels.

  8. The poor homology stringency in the heteroduplex allows strand exchange to incorporate desirable mismatches without sacrificing recognition in vivo.

    Science.gov (United States)

    Danilowicz, Claudia; Yang, Darren; Kelley, Craig; Prévost, Chantal; Prentiss, Mara

    2015-07-27

    RecA family proteins are responsible for homology search and strand exchange. In bacteria, homology search begins after RecA binds an initiating single-stranded DNA (ssDNA) in the primary DNA-binding site, forming the presynaptic filament. Once the filament is formed, it interrogates double-stranded DNA (dsDNA). During the interrogation, bases in the dsDNA attempt to form Watson-Crick bonds with the corresponding bases in the initiating strand. Mismatch dependent instability in the base pairing in the heteroduplex strand exchange product could provide stringent recognition; however, we present experimental and theoretical results suggesting that the heteroduplex stability is insensitive to mismatches. We also present data suggesting that an initial homology test of 8 contiguous bases rejects most interactions containing more than 1/8 mismatches without forming a detectable 20 bp product. We propose that, in vivo, the sparsity of accidental sequence matches allows an initial 8 bp test to rapidly reject almost all non-homologous sequences. We speculate that once the initial test is passed, the mismatch insensitive binding in the heteroduplex allows short mismatched regions to be incorporated in otherwise homologous strand exchange products even though sequences with less homology are eventually rejected. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

  9. Adaptive Neural Stabilizing Controller for a Class of Mismatched Uncertain Nonlinear Systems by State and Output Feedback.

    Science.gov (United States)

    Arefi, Mohammad Mehdi; Jahed-Motlagh, Mohammad Reza; Karimi, Hamid Reza

    2015-08-01

    In this paper, first, an adaptive neural network (NN) state-feedback controller for a class of nonlinear systems with mismatched uncertainties is proposed. By using a radial basis function NN (RBFNN), a bound of unknown nonlinear functions is approximated so that no information about the upper bound of mismatched uncertainties is required. Then, an observer-based adaptive controller based on RBFNN is designed to stabilize uncertain nonlinear systems with immeasurable states. The state-feedback and observer-based controllers are based on Lyapunov and strictly positive real-Lyapunov stability theory, respectively, and it is shown that the asymptotic convergence of the closed-loop system to zero is achieved while maintaining bounded states at the same time. The presented methods are more general than the previous approaches, handling systems with no restriction on the dimension of the system and the number of inputs. Simulation results confirm the effectiveness of the proposed methods in the stabilization of mismatched nonlinear systems.

  10. Oblique effect in visual mismatch negativity

    Directory of Open Access Journals (Sweden)

    Endre eTakács

    2013-09-01

    Full Text Available We investigated whether visual orientation anisotropies (known as oblique effect exist in non-attended visual changes using event-related potentials (ERP. We recorded visual mismatch negativity (vMMN which signals violation of sequential regularities. In the visual periphery unattended, task-irrelevant Gábor patches were displayed in an oddball sequence while subjects performed a tracking task in the central field. A moderate change (50° in the orientation of stimuli revealed no consistent change-related components. However we found orientation-related differences around 170 ms in occipito-temporal areas in the amplitude of the ERPs evoked by standard stimuli. In a supplementary experiment we determined the amount of orientation difference that is needed for change detection in an active, attended paradigm. Results exhibited the classical oblique effect; subjects detected 10° deviations from cardinal directions, while threshold from oblique directions was 17°. These results provide evidence that perception of change could be accomplished at significantly smaller thresholds, than what elicits vMMN. In Experiment2 we increased the orientation change to 90°. Deviant-minus-standard difference was negative in occipito-parietal areas, between 120-200 ms after stimulus onset. VMMNs to changes from cardinal angles were larger and more sustained than vMMNs evoked by changes from oblique angles. Changes from cardinal orientations represent a more detectable signal for the automatic change detection system than changes from oblique angles, thus increased vMMN to these larger deviances might be considered a variant of the magnitude of deviance effect rarely observed in vMMN studies.

  11. Understanding the Consequences of Property Rights Mismatches: a Case Study of New Zealand's Marine Resources

    Directory of Open Access Journals (Sweden)

    Tracy Yandle

    2007-12-01

    Full Text Available Within fisheries and natural resource management literature, there is considerable discussion about the key roles that property rights can play in building biologically and socially sustainable resource management regimes. A key point of agreement is that secure long-term property rights provide an incentive for resource users to manage the resource sustainably. However, property rights mismatches create ambiguity and conflict in resource use. Though the term mismatches is usually associated with problems in matching temporal and spatial resource characteristics with institutional characteristics, I expand it here to include problems that can arise when property rights are incompletely defined or incompletely distributed. Property rights mismatches are particularly likely to occur over marine resources, for which multiple types of resource and resource user can be engaged and managed under a variety of regulatory regimes. I used New Zealand's marine resources to examine the causes and consequences of these property rights mismatches. New Zealand is particularly interesting because its property-rights-based commercial fishing regime, in the form of individual transferable quotas, has attracted considerable positive attention. However, my review of the marine natural resource management regime from a broader property rights perspective highlights a series of problems caused by property rights mismatches, including competition for resources among commercial, customary, and recreational fishers; spatial conflict among many marine resource users; and conflicting incentives and objectives for the management of resources over time. The use of a property rights perspective also highlights some potential solutions such as the layering of institutional arrangements and the improvement of how property rights are defined to encourage long-term sustainability.

  12. Communication in the Home and Classroom: Match or Mismatch?

    Science.gov (United States)

    Iglesias, Aquiles

    1985-01-01

    The article examines variations in communication of cultural-linguistic minority children at home and in school and describes a communicative match/mismatch model. Implications of educational policy and program development are noted. (CL)

  13. Assessment of primer/template mismatch effects on real-time PCR amplification of target taxa for GMO quantification.

    Science.gov (United States)

    Ghedira, Rim; Papazova, Nina; Vuylsteke, Marnik; Ruttink, Tom; Taverniers, Isabel; De Loose, Marc

    2009-10-28

    GMO quantification, based on real-time PCR, relies on the amplification of an event-specific transgene assay and a species-specific reference assay. The uniformity of the nucleotide sequences targeted by both assays across various transgenic varieties is an important prerequisite for correct quantification. Single nucleotide polymorphisms (SNPs) frequently occur in the maize genome and might lead to nucleotide variation in regions used to design primers and probes for reference assays. Further, they may affect the annealing of the primer to the template and reduce the efficiency of DNA amplification. We assessed the effect of a minor DNA template modification, such as a single base pair mismatch in the primer attachment site, on real-time PCR quantification. A model system was used based on the introduction of artificial mismatches between the forward primer and the DNA template in the reference assay targeting the maize starch synthase (SSIIb) gene. The results show that the presence of a mismatch between the primer and the DNA template causes partial to complete failure of the amplification of the initial DNA template depending on the type and location of the nucleotide mismatch. With this study, we show that the presence of a primer/template mismatch affects the estimated total DNA quantity to a varying degree.

  14. 基于运行模式切换的低不匹配误差高动态范围CMOS智能温度传感器∗%A Low Mismatch Error and High Dynamic Range CMOS Smart Temperature Sensor Based on Operational Modes Switching

    Institute of Scientific and Technical Information of China (English)

    单文焘; 张培勇; 冯忱晖

    2015-01-01

    A new circuit structure which can switch between two operational modes is proposed to reduce the mis-match errors of CMOS smart temperature sensors and ensure a high dynamic range of the output. The new structure can reduce more than 66%of the mismatch error in contrast to traditional circuit by theoretical analysis. The simula-tion between -55 ℃ and 125℃ based on 0.18μm process shows that a dynamic range of about 90% which is lar-ger than the output of Pertijs’ structure can be acquired using this new structure. This conclusion is verified by chip testing result between -10 ℃ and 100 ℃.%提出了一种新的电路结构,通过两种运行模式的切换,可以在降低CMOS智能温度传感器不匹配误差的同时,保证输出有尽可能高的动态范围。理论分析得出,相对于传统结构,新结构的不匹配误差能减小66%以上。0.18μm工艺环境下的仿真结果表明,在-55℃~125℃的温度范围内,输出能达到90%左右的动态范围,和Pertijs提出的改进结构相比,有较大幅度的提高。芯片实测结果在-10℃~100℃的温度范围内证实了这个结论。

  15. KAMG: A Tool for Converting Blood Ties and Affinity Ties into Adjacency Matrices

    Directory of Open Access Journals (Sweden)

    Hang Xiong

    2016-07-01

    Full Text Available Kinship Adjacency Matrix Generator (KAMG is a browser-based software for creating adjacency matrices using the information of kinship ties. Specifically, it is capable of converting the family trees in the format of GEDCOM files into adjacency matrices of blood relationship. With the data of intermarriages between different families, it can further create the adjacency matrix of affinity relationship for the families. The outcomes can be directly used to create networks. KAMG is written in JavaScript and implemented on web browsers. It is completely open source and the source code is publicly available on GitHub.

  16. Mechanism of mismatch recognition revealed by human MutS[beta] bound to unpaired DNA loops

    Energy Technology Data Exchange (ETDEWEB)

    Gupta, Shikha; Gellert, Martin; Yang, Wei (NIH)

    2012-04-17

    DNA mismatch repair corrects replication errors, thus reducing mutation rates and microsatellite instability. Genetic defects in this pathway cause Lynch syndrome and various cancers in humans. Binding of a mispaired or unpaired base by bacterial MutS and eukaryotic MutS{alpha} is well characterized. We report here crystal structures of human MutS{beta} in complex with DNA containing insertion-deletion loops (IDL) of two, three, four or six unpaired nucleotides. In contrast to eukaryotic MutS{alpha} and bacterial MutS, which bind the base of a mismatched nucleotide, MutS{beta} binds three phosphates in an IDL. DNA is severely bent at the IDL; unpaired bases are flipped out into the major groove and partially exposed to solvent. A normal downstream base pair can become unpaired; a single unpaired base can thereby be converted to an IDL of two nucleotides and recognized by MutS{beta}. The C-terminal dimerization domains form an integral part of the MutS structure and coordinate asymmetrical ATP hydrolysis by Msh2 and Msh3 with mismatch binding to signal for repair.

  17. User image mismatch in anaesthesia alarms: a cognitive systems analysis.

    Science.gov (United States)

    Raymer, Karen E; Bergström, Johan

    2013-01-01

    In this study, principles of Cognitive Systems Engineering are used to better understand the human-machine interaction manifesting in the use of anaesthesia alarms. The hypothesis is that the design of the machine incorporates built-in assumptions of the user that are discrepant with the anaesthesiologist's self-assessment, creating 'user image mismatch'. Mismatch was interpreted by focusing on the 'user image' as described from the perspectives of both machine and user. The machine-embedded image was interpreted through document analysis. The user-described image was interpreted through user (anaesthesiologist) interviews. Finally, an analysis was conducted in which the machine-embedded and user-described images were contrasted to identify user image mismatch. It is concluded that analysing user image mismatch expands the focus of attention towards macro-elements in the interaction between man and machine. User image mismatch is interpreted to arise from complexity of algorithm design and incongruity between alarm design and tenets of anaesthesia practice. Cognitive system engineering principles are applied to enhance the understanding of the interaction between anaesthesiologist and alarm. The 'user image' is interpreted and contrasted from the perspectives of machine as well as the user. Apparent machine-user mismatch is explored pertaining to specific design features.

  18. Adjacent tooth trauma in complicated mandibular third molar surgery: Risk degree classification and digital surgical simulation

    Science.gov (United States)

    Ye, Zhou-Xi; Yang, Chi; Ge, Jing

    2016-01-01

    Analysis of adjacent tooth resistance is essential in wisdom teeth extraction to prevent adjacent tooth trauma, however it lacks adequate attention nowadays. This study aims at suggesting special extraction methods based on adjacent tooth resistance analysis for prevention of adjacent tooth damage. In this study, 136 complicated mandibular third molars extracted using piezosurgery were reviewed and classified based on the adjacent teeth resistances shown in orthopantomogram (OPG) during their mesio-distal rotations: degree I refers to teeth with no adjacent teeth resistance; degree II refers to teeth with resistance released after mesial-half crown sectioning; degree III refers to teeth which still had resistance after mesial-half crown sectioning. With the use of surgical simulations using cone beam computerized tomography (CBCT) reconstruction, all teeth in degree I were designed to rotate mesio-distally; 86.36%(38/44) teeth in degree II were designed to rotate mesio-distally after mesio-half crown sectioning; 69.09%(36/55) teeth in degree III were designed to rotate bucco-lingually. All teeth were extracted successfully, and only one adjacent tooth was subluxated due to the incomplete bone removal. Our study suggested that in order to prevent adjacent teeth trauma, complete bone removal is of importance, and impacted teeth with higher adjacent teeth trauma risks should consider bucco-lingual rotations. PMID:27974819

  19. Adjacent tooth trauma in complicated mandibular third molar surgery: Risk degree classification and digital surgical simulation.

    Science.gov (United States)

    Ye, Zhou-Xi; Yang, Chi; Ge, Jing

    2016-12-15

    Analysis of adjacent tooth resistance is essential in wisdom teeth extraction to prevent adjacent tooth trauma, however it lacks adequate attention nowadays. This study aims at suggesting special extraction methods based on adjacent tooth resistance analysis for prevention of adjacent tooth damage. In this study, 136 complicated mandibular third molars extracted using piezosurgery were reviewed and classified based on the adjacent teeth resistances shown in orthopantomogram (OPG) during their mesio-distal rotations: degree I refers to teeth with no adjacent teeth resistance; degree II refers to teeth with resistance released after mesial-half crown sectioning; degree III refers to teeth which still had resistance after mesial-half crown sectioning. With the use of surgical simulations using cone beam computerized tomography (CBCT) reconstruction, all teeth in degree I were designed to rotate mesio-distally; 86.36%(38/44) teeth in degree II were designed to rotate mesio-distally after mesio-half crown sectioning; 69.09%(36/55) teeth in degree III were designed to rotate bucco-lingually. All teeth were extracted successfully, and only one adjacent tooth was subluxated due to the incomplete bone removal. Our study suggested that in order to prevent adjacent teeth trauma, complete bone removal is of importance, and impacted teeth with higher adjacent teeth trauma risks should consider bucco-lingual rotations.

  20. A New Predistortion Method with Low Adjacent Channel Leakage Based on Piecewise Linear%一种基于分段线性化的低邻道泄漏预失真方法

    Institute of Scientific and Technical Information of China (English)

    胡明; 潘文生; 朱晓东

    2013-01-01

    A new method of linearity based on predistortion for memory nonlinear system is introduced in this paper .Differ-ent from the traditional predistortion models (direct study model and indirect study model ) ,the transfer function instead of the in-verse transfer function is obtained for memory nonlinear system .The transfer function is presented as piecewise linear function first , and then be used in predistortion process .The results show that the NMSE (Normalized Mean Square Error ) of the memory nonlin-ear system output is reduced about 80dB ,and the ACLR (Adjacent Channel Leakage Ratio ) is reduced over 70dB ,comparing with no predistortion system .The memory and nonlinear characteristics are eliminated ,and the relationship of input and output becomes linear and memoryless .%本文基于预失真技术提出一种记忆非线性系统的线性化处理方法。与传统预失真模型(直接学习型、间接学习型)获取系统逆传递函数的方式不同,这里采用直接获取记忆非线性系统传递函数的方式,将传递函数表示为分段线性化形式后,应用于所提出的预失真方法中。验证结果显示,该方法与无预失真情况相比,记忆非线性系统输出的归一化均方误差改善约80dB ,且邻道泄漏比的改善值超过70dB ,克服系统的记忆性、非线性,让记忆非线性系统的输出和输入呈现线性关系。

  1. Pairing Mismatched ssDNA to dsDNA Studied with Reflectometric Interference Spectroscopy Sensor

    Institute of Scientific and Technical Information of China (English)

    Qing-Qing Wu; Kai-Ge Wang; Dan Sun; Shuang Wang; Chen Zhang; Wei Zhao

    2016-01-01

    The interaction between two single-stranded DNA (ssDNA) molecules as pairing to a double-stranded DNA (dsDNA) molecule is studied by the reflectometric interference spectroscopy (RIFS) technology.A nano-porous anode alumina membrane coated an Au layer is employed as the sensor substrate.The results indicate that when there are mismatched nucleotide bases,the effective optical thicknesses (OTeff) have obvious difference,and the changes of OTeff are connected with the sensor layer thickness and the effective refractive index.It is also demonstrated that the RIFS technique can be used to precisely detect the ssDNA molecules with individual base mismatched as pairing to dsDNA.

  2. Image edge-enhancement in optical microscopy with a phase mismatched spiral phase plate

    Institute of Scientific and Technical Information of China (English)

    Shibiao Wei; Jing Bu; Siwei Zhu; Xiaocong Yuan

    2011-01-01

    @@ We present a spiral phase filtering system with a large tolerance for edge enhancement of both phase and amplitude objects in optical microscopy.The method is based on a Fourier 4-f spatial filtering system.A phase mismatched spiral phase plate (SPP) fabricated by electron beam lithography is employed as the radial Hilbert transform for image edge enhancement.Compared with holography, SPP is simple,economical, reliable, and easy to integrate.%We present a spiral phase filtering system with a large tolerance for edge enhancement of both phase and amplitude objects in optical microscopy. The method is based on a Fourier 4-f spatial filtering system.A phase mismatched spiral phase plate (SPP) fabricated by electron beam lithography is employed as the radial Hilbert transform for image edge enhancement. Compared with holography, SPP is simple,economical, reliable, and easy to integrate.

  3. Molecularly resolved label-free sensing of single nucleobase mismatches by interfacial LNA probes

    Science.gov (United States)

    Mishra, Sourav; Lahiri, Hiya; Banerjee, Siddhartha; Mukhopadhyay, Rupa

    2016-01-01

    So far, there has been no report on molecularly resolved discrimination of single nucleobase mismatches using surface-confined single stranded locked nucleic acid (ssLNA) probes. Herein, it is exemplified using a label-independent force-sensing approach that an optimal coverage of 12-mer ssLNA sensor probes formed onto gold(111) surface allows recognition of ssDNA targets with twice stronger force sensitivity than 12-mer ssDNA sensor probes. The force distributions are reproducible and the molecule-by-molecule force measurements are largely in agreement with ensemble on-surface melting temperature data. Importantly, the molecularly resolved detection is responsive to the presence of single nucleobase mismatches in target sequences. Since the labelling steps can be eliminated from protocol, and each force-based detection event occurs within milliseconds' time scale, the force-sensing assay is potentially capable of rapid detection. The LNA probe performance is indicative of versatility in terms of substrate choice - be it gold (for basic research and array-based applications) or silicon (for ‘lab-on-a-chip’ type devices). The nucleic acid microarray technologies could therefore be generally benefited by adopting the LNA films, in place of DNA. Since LNA is nuclease-resistant, unlike DNA, and the LNA-based assay is sensitive to single nucleobase mismatches, the possibilities for label-free in vitro rapid diagnostics based on the LNA probes may be explored. PMID:27025649

  4. Systematic analysis of CRISPR-Cas9 mismatch tolerance reveals low levels of off-target activity.

    Science.gov (United States)

    Anderson, Emily M; Haupt, Amanda; Schiel, John A; Chou, Eldon; Machado, Hidevaldo B; Strezoska, Žaklina; Lenger, Steve; McClelland, Shawn; Birmingham, Amanda; Vermeulen, Annaleen; Smith, Anja van Brabant

    2015-10-10

    The discovery that the bacterial clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated protein 9 (Cas9) acquired immune system can be utilized to create double-strand breaks (DSBs) in eukaryotic genomes has resulted in the ability to create genomic changes more easily than with other genome engineering techniques. While there is significant potential for the CRISPR-Cas9 system to advance basic and applied research, several unknowns remain, including the specificity of the RNA-directed DNA cleavage by the small targeting RNA, the CRISPR RNA (crRNA). Here we describe a novel synthetic RNA approach that allows for high-throughput gene editing experiments. This was used with a functional assay for protein disruption to perform high-throughput analysis of crRNA activity and specificity. We performed a comprehensive test of target cleavage using crRNAs that contain one and two nucleotide mismatches to the DNA target in the 20mer targeting region of the crRNA, allowing for the evaluation of hundreds of potential mismatched target sites without the requirement for the off-target sequences and their adjacent PAMs to be present in the genome. Our results demonstrate that while many crRNAs are functional, less than 5% of crRNAs with two mismatches to their target are effective in gene editing; this suggests an overall high level of functionality but low level of off-targeting.

  5. A Neuronal Model of Predictive Coding Accounting for the Mismatch Negativity

    OpenAIRE

    Wacongne, Catherine; Changeux, Jean-Pierre; Dehaene, Stanislas

    2012-01-01

    International audience; The mismatch negativity (MMN) is thought to index the activation of specialized neural networks for active prediction and deviance detection. However, a detailed neuronal model of the neurobiological mechanisms underlying the MMN is still lacking, and its computational foundations remain debated. We propose here a detailed neuronal model of auditory cortex, based on predictive coding, that accounts for the critical features of MMN. The model is entirely composed of spi...

  6. [Characteristics and Outcomes of Treatment in Patients with Stage IV Colorectal Cancer with Mismatch Repair Deficiency].

    Science.gov (United States)

    Ishibashi, Keiichiro; Chika, Noriyasu; Suzuki, Okihide; Ito, Tetsuya; Amano, Kunihiko; Kumamoto, Kensuke; Fukuchi, Minoru; Kumagai, Youichi; Mochiki, Erito; Ishida, Hideyuki

    2016-11-01

    Mismatch repair(MMR)protein deficiency in colorectal cancer is well correlated with high-level microsatellite instability (MSI-H). There are little data on mismatch repair deficiency(dMMR)colorectal cancers in Japan. In addition, we have no available data on the therapeutic efficacy of oxaliplatin(oxa)-based chemotherapy, one of the standard treatment regimens for metastatic colorectal cancer, for patients with dMMR colorectal cancer. The subjects were 254 patients with Stage IV colorectal cancer whose tumors were immunohistochemically stained for MMR proteins, MLH1, MSH2, MSH6, and PMS2. Patients who underwent R0 resection were excluded. Clinicopathologic factors and the efficacy of oxa-based chemotherapy were compared between patients with dMMR colorectal cancer and those with mismatch repair proficient(pMMR)colorectal cancer. There were 7(2.8%)patients with dMMR. Four patients demonstrated both MLH1 and PMS2 loss, while 3 patients demonstrated both MSH2 and MSH6 loss. Though the dMMR had a higher frequency in female patients(p=0.02) and a lower frequency in those with liver metastasis(pcolorectal cancers was lower than those(4-11%)reported in Western countries. Therefore, the clinical significance of universal screeningfor dMMR in all colorectal cancer samples may not be valid. Concerningsurvival benefit, oxa-based chemotherapy seems to be an effective alternative in clinical practice for metastatic colorectal cancer patients with dMMR.

  7. Parametric Adaptive Radar Detector with Enhanced Mismatched Signals Rejection Capabilities

    Directory of Open Access Journals (Sweden)

    Liu Bin

    2010-01-01

    Full Text Available We consider the problem of adaptive signal detection in the presence of Gaussian noise with unknown covariance matrix. We propose a parametric radar detector by introducing a design parameter to trade off the target sensitivity with sidelobes energy rejection. The resulting detector merges the statistics of Kelly's GLRT and of the Rao test and so covers Kelly's GLRT and the Rao test as special cases. Both invariance properties and constant false alarm rate (CFAR behavior for this detector are studied. At the analysis stage, the performance of the new receiver is assessed and compared with several traditional adaptive detectors. The results highlight better rejection capabilities of this proposed detector for mismatched signals. Further, we develop two two-stage detectors, one of which consists of an adaptive matched filter (AMF followed by the aforementioned detector, and the other is obtained by cascading a GLRT-based Subspace Detector (SD and the proposed adaptive detector. We show that the former two-stage detector outperforms traditional two-stage detectors in terms of selectivity, and the latter yields more robustness.

  8. Modelling trial-by-trial changes in the mismatch negativity.

    Directory of Open Access Journals (Sweden)

    Falk Lieder

    Full Text Available The mismatch negativity (MMN is a differential brain response to violations of learned regularities. It has been used to demonstrate that the brain learns the statistical structure of its environment and predicts future sensory inputs. However, the algorithmic nature of these computations and the underlying neurobiological implementation remain controversial. This article introduces a mathematical framework with which competing ideas about the computational quantities indexed by MMN responses can be formalized and tested against single-trial EEG data. This framework was applied to five major theories of the MMN, comparing their ability to explain trial-by-trial changes in MMN amplitude. Three of these theories (predictive coding, model adjustment, and novelty detection were formalized by linking the MMN to different manifestations of the same computational mechanism: approximate Bayesian inference according to the free-energy principle. We thereby propose a unifying view on three distinct theories of the MMN. The relative plausibility of each theory was assessed against empirical single-trial MMN amplitudes acquired from eight healthy volunteers in a roving oddball experiment. Models based on the free-energy principle provided more plausible explanations of trial-by-trial changes in MMN amplitude than models representing the two more traditional theories (change detection and adaptation. Our results suggest that the MMN reflects approximate Bayesian learning of sensory regularities, and that the MMN-generating process adjusts a probabilistic model of the environment according to prediction errors.

  9. Mismatch discrimination in fluorescent in situ hybridization using different types of nucleic acids

    DEFF Research Database (Denmark)

    Fontenete, Sílvia; Joana, Barros; Pedro, Madureira

    2015-01-01

    in biological targets, Helicobacter pylori and Helicobacter acinonychis. This is also the first study where unlocked nucleic acids (UNA) were used as chemistry modification in oligonucleotides for FISH methodologies. The effectiveness in detecting the specific target and in mismatch discrimination appears...... acid monomers might be crucial to the success of the analysis. To achieve the expected accuracy in detection, FISH probes should have high binding affinity towards their complementary strands and discriminate effectively the noncomplementary strands. In this study, we investigate the effect...... of different chemical modifications in fluorescent probes on their ability to successfully detect the complementary target and discriminate the mismatched base pairs by FISH. To our knowledge, this paper presents the first study where this analysis is performed with different types of FISH probes directly...

  10. A Review On Cognitive Mismatch Between Computer and Information Technology And Physicians

    Directory of Open Access Journals (Sweden)

    Fozia Anwar

    2012-08-01

    Full Text Available Health Information Technology has a great potential to transform the existing health care systems by making them safe, effective and efficient. Multi-functionality and interoperability of health information systems are very important functions. Hence these features cannot be achieved without addressing the knowledge and skills of the health care personnel. There is a great mismatch between Information Technology knowledge and skills of physicians as this discipline is completely missing in their educational tenure. So usability of health information technologies and system as well as evidence based practice in the future can be improved by addressing this cognitive mismatch. This will result in persistent partnership in HIS design between physician and IT personnel to get maximum usibility of the systems,

  11. Heat Mismatch of future Net Zero Energy Buildings within district heating areas in Denmark

    DEFF Research Database (Denmark)

    Nielsen, Steffen; Möller, Bernd

    The long-term goal for Denmark is to develop an energy system solely based on renewable energy sources (RES) in 2050. To reach this goal energy savings in buildings are essential. Therefore, a focus on energy efficient measures in buildings and net zero energy buildings (NZEBs) have increased...... systems enables them to send or receive energy from these systems. This is beneficial for NZEBs because even though they have an annual net exchange of zero, there is a temporal mismatch in regard to the energy consumption of buildings and the production from the renewable energy units added to them...... instead of wasting the energy. The objective in this paper is find how large an area of NZEBs is to be built within DH areas and how the heat mismatch of NZEBs influence different types of Danish DH systems. In the analyses nine different scenarios are analyzed. The examination is from a technical...

  12. Thermostable Mismatch-Recognizing Protein MutS Suppresses Nonspecific Amplification during Polymerase Chain Reaction (PCR)

    Science.gov (United States)

    Fukui, Kenji; Bessho, Yoshitaka; Shimada, Atsuhiro; Yokoyama, Shigeyuki; Kuramitsu, Seiki

    2013-01-01

    Polymerase chain reaction (PCR)-related technologies are hampered mainly by two types of error: nonspecific amplification and DNA polymerase-generated mutations. Here, we report that both errors can be suppressed by the addition of a DNA mismatch-recognizing protein, MutS, from a thermophilic bacterium. Although it had been expected that MutS has a potential to suppress polymerase-generated mutations, we unexpectedly found that it also reduced nonspecific amplification. On the basis of this finding, we propose that MutS binds a mismatched primer-template complex, thereby preventing the approach of DNA polymerase to the 3′ end of the primer. Our simple methodology improves the efficiency and accuracy of DNA amplification and should therefore benefit various PCR-based applications, ranging from basic biological research to applied medical science. PMID:23519109

  13. The Effect of Codon Mismatch on the Protein Translation System.

    Directory of Open Access Journals (Sweden)

    Dinglin Zhang

    Full Text Available Incorrect protein translation, caused by codon mismatch, is an important problem of living cells. In this work, a computational model was introduced to quantify the effects of codon mismatch and the model was used to study the protein translation of Saccharomyces cerevisiae. According to simulation results, the probability of codon mismatch will increase when the supply of amino acids is unbalanced, and the longer is the codon sequence, the larger is the probability for incorrect translation to occur, making the synthesis of long peptide chain difficult. By comparing to simulation results without codon mismatch effects taken into account, the fraction of mRNAs with bound ribosome decrease faster along the mRNAs, making the 5' ramp phenomenon more obvious. It was also found in our work that the premature mechanism resulted from codon mismatch can reduce the proportion of incorrect translation when the amino acid supply is extremely unbalanced, which is one possible source of high fidelity protein synthesis after peptidyl transfer.

  14. Direct Mismatch Characterization of femto-Farad Capacitors

    KAUST Repository

    Omran, Hesham

    2015-08-17

    Reducing the capacitance of programmable capacitor arrays, commonly used in analog integrated circuits, is necessary for low-energy applications. However, limited mismatch data is available for small capacitors. We report mismatch measurement for a 2fF poly-insulator-poly (PIP) capacitor, which is the smallest reported PIP capacitor to the best of the authors’ knowledge. Instead of using complicated custom onchip circuitry, direct mismatch measurement is demonstrated and verified using Monte Carlo Simulations and experimental measurements. Capacitive test structures composed of 9 bit programmable capacitor arrays (PCAs) are implemented in a low-cost 0:35m CMOS process. Measured data is compared to mismatch of large PIP capacitors, theoretical models, and recently published data. Measurement results indicate an estimated average relative standard deviation of 0.43% for the 2fF unit capacitor, which is better than the reported mismatch of metal-oxide-metal (MOM) fringing capacitors implemented in an advanced 32nm CMOS process.

  15. HLA Mismatching Strategies for Solid Organ Transplantation - a Balancing Act

    Directory of Open Access Journals (Sweden)

    Andrea A. Zachary

    2016-12-01

    Full Text Available HLA matching provides numerous benefits in organ transplantation including better graft function, fewer rejection episodes, longer graft survival, and the possibility of reduced immunosuppression. Mismatches are attended by more frequent rejection episodes that require increased immunosuppression that, in turn, can increase the risk of infection and malignancy. HLA mismatches also incur the risk of sensitization, which can reduce the opportunity and increase waiting time for a subsequent transplant. However, other factors such as donor age, donor type, and immunosuppression protocol, can affect the benefit derived from matching. Further, finding a well matched donor may not be possible for all patients and usually prolongs waiting time. Strategies to optimize transplantation for patients without a well matched donor should take into account the immunologic barrier represented by different mismatches: what are the least immunogenic mismatches considering the patient’s HLA phenotype; should repeated mismatches be avoided; is the patient sensitized to HLA and, if so, what are the strengths of the patient’s antibodies? This information can then be used to define the HLA type of an immunologically optimal donor and the probability of such a donor occurring. A probability that is considered to be too low, may require expanding the donor population through paired donation or modifying what is acceptable which may require employing treatment to overcome immunologic barriers such as increased immunosuppression or desensitization. Thus, transplantation must strike a balance between the risk associated with waiting for the optimal donor and the risk associated with a less than optimal donor.

  16. The study on the unfi ied dse cription method of cutting process model based on extended attribute adjacency graph%基于扩展属性邻接图的切削体过程模型统一描述方法研究

    Institute of Scientific and Technical Information of China (English)

    王小芳

    2015-01-01

    为了实现工艺设计过程中对产品设计数据的有效重用,以扩展属性邻接图为基础,描述了切削体扩展属性邻接图、工序切削特征模型和单元切削体模型,最后提出扩展属性邻接矩阵和扩展属性信息表两种特征信息存储方式.%It simply describes the concept of cutting bodies , and analyzes the property adjacent to the figure , process models , features cutting unit and cutting body model based on EAAG , establishes the characteristics of the information storage process model , illustrates the geometric characteristics of the process model information storage based on extended attributes adjacency matrix .

  17. Geodynamical features and geotectonic evolution of Kalimantan and adjacent areas

    Institute of Scientific and Technical Information of China (English)

    杨牧; 彭省临

    2004-01-01

    Kalimantan Island is located in the Southeast Asia continental marginal tectono-magmatic mobile zone in the West Pacific Ocean, where the lithosphere of Earth is one of the most complicated tectonic mobile regions on the Earth since Meso-Cenozoic. Based on the geophysical data of the basement and deep structures, the stress field of mantle flow, the maximum principal stress field and geothermal flux, the crustal nature and geodynamical features of Kalimantan Island and adjacent areas were analyzed. Researches on geotectonic movement and evolution of Kalimantan and adjacent areas show that Southeast Asia continental margin crustobody was formed at about middle-late Triassic. In addition, the geotectonic units of the Kalimantan area were subdivided, and characteristics of their geotectonic evolution were discussed.

  18. 基于理想点法的邻近基坑高层建筑安全性评价%Safety assessment on high-rise adjacent to foundation pit based on ideal point method

    Institute of Scientific and Technical Information of China (English)

    黄仁东; 华正阳

    2014-01-01

    为更加准确地评价紧邻基坑高层建筑物的安全状况,综合考虑了建筑物稳定性、基坑与建筑之间土体扰动程度和建筑物地基抗扰动能力三方面因素,采用相关系数法选取14个评价指标,构建建筑物安全评价模型。并通过变异系数法和AHP确定各评价指标融合权重,最后采用理想点法对某紧邻基坑的高层建筑物进行安全评价。结果表明,该模型可以有效判断邻近深基坑高层建筑物的安全等级,其评判结果与工程实际相符。%To gain an accurate and proper safety assessment for high-rise adjacent to foundation pit , three aspects of factors including the stability of building , the disturbance of soil between the foundation pit and building , and the disturbance resistance capability of the building were thoroughly studied .14 evaluating indexes derived by the correlation coefficients method were used to build a building safety evaluation model .The coefficient of variation method and the analytical hierarchy process were used to decide the weights of indexes .The ideal point method was then used in safety assessment of certain high-rise adjacent to deep foundation pit .The results showed that the mod-el can effectively judge the safety level of high-rise adjacent to deep foundation pit , and the result is consistent with the actual situation .

  19. Applying different equations to evaluate the level of mismatch between students and school furniture.

    Science.gov (United States)

    Castellucci, H I; Arezes, P M; Molenbroek, J F M

    2014-07-01

    The mismatch between students and school furniture is likely to result in a number of negative effects, such as uncomfortable body posture, pain, and ultimately, it may also affect the learning process. This study's main aim is to review the literature describing the criteria equations for defining the mismatch between students and school furniture, to apply these equations to a specific sample and, based on the results, to propose a methodology to evaluate school furniture suitability. The literature review comprises one publications database, which was used to identify the studies carried out in the field of the abovementioned mismatch. The sample used for testing the different equations was composed of 2261 volunteer subjects from 14 schools. Fifteen studies were found to meet the criteria of this review and 21 equations to test 6 furniture dimensions were identified. Regarding seat height, there are considerable differences between the two most frequently used equations. Although seat to desk clearance was evaluated by knee height, this condition seems to be based on the false assumption that students are sitting on a chair with a proper seat height. Finally, the proposed methodology for suitability evaluation of school furniture should allow for a more reliable analysis of school furniture.

  20. Position dependent mismatch discrimination on DNA microarrays – experiments and model

    Directory of Open Access Journals (Sweden)

    Michel Wolfgang

    2008-12-01

    Full Text Available Abstract Background The propensity of oligonucleotide strands to form stable duplexes with complementary sequences is fundamental to a variety of biological and biotechnological processes as various as microRNA signalling, microarray hybridization and PCR. Yet our understanding of oligonucleotide hybridization, in particular in presence of surfaces, is rather limited. Here we use oligonucleotide microarrays made in-house by optically controlled DNA synthesis to produce probe sets comprising all possible single base mismatches and base bulges for each of 20 sequence motifs under study. Results We observe that mismatch discrimination is mostly determined by the defect position (relative to the duplex ends as well as by the sequence context. We investigate the thermodynamics of the oligonucleotide duplexes on the basis of double-ended molecular zipper. Theoretical predictions of defect positional influence as well as long range sequence influence agree well with the experimental results. Conclusion Molecular zipping at thermodynamic equilibrium explains the binding affinity of mismatched DNA duplexes on microarrays well. The position dependent nearest neighbor model (PDNN can be inferred from it. Quantitative understanding of microarray experiments from first principles is in reach.

  1. Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease.

    Science.gov (United States)

    Nakae, Setsu; Hijikata, Atsushi; Tsuji, Toshiyuki; Yonezawa, Kouki; Kouyama, Ken-Ichi; Mayanagi, Kouta; Ishino, Sonoko; Ishino, Yoshizumi; Shirai, Tsuyoshi

    2016-11-01

    Archaeal NucS nuclease was thought to degrade the single-stranded region of branched DNA, which contains flapped and splayed DNA. However, recent findings indicated that EndoMS, the orthologous enzyme of NucS, specifically cleaves double-stranded DNA (dsDNA) containing mismatched bases. In this study, we determined the structure of the EndoMS-DNA complex. The complex structure of the EndoMS dimer with dsDNA unexpectedly revealed that the mismatched bases were flipped out into binding sites, and the overall architecture most resembled that of restriction enzymes. The structure of the apo form was similar to the reported structure of Pyrococcus abyssi NucS, indicating that movement of the C-terminal domain from the resting state was required for activity. In addition, a model of the EndoMS-PCNA-DNA complex was preliminarily verified with electron microscopy. The structures strongly support the idea that EndoMS acts in a mismatch repair pathway.

  2. 基于MRI的阴茎深悬韧带及毗邻结构的三维重建%The three-dimensional reconstruction of penile suspensory ligament and adjacent structures based on the MRI image

    Institute of Scientific and Technical Information of China (English)

    刘彦龙; 季渝军; 王洪一; 张玉龙; 李世荣

    2012-01-01

    suspensory ligament's start-stop point,the angle with cavernous body of penis and the attached area in the corpus cavernosum penis.Conclusion Based on the MRI 3D reconstruction of deep penile suspensory ligament and adjacent structures,we can carry out dynamic,three-dimensional multi angle observation of patients deep penile suspensory ligament,and can use the reconstructed image to provide certain theory basis for the judgement of the corpus cavernosum penis extension length and penile suspensory ligament depth before penis extension operation.

  3. Q Values of Seismic Coda in Ningxia and Adjacent Regions based on Sato Model%利用Sato模型对宁夏及邻区尾波Q值的研究

    Institute of Scientific and Technical Information of China (English)

    师海阔; 朱新运; 贺永忠; 张立恒

    2011-01-01

    Based on the Sato model, adopting digital wave datas of 121 earthquake above ML2.0 from January 2008 to December 2009, which were recorded by Ningxia earthquake nets, the average Q value of seismic coda in relative regions is calculated, and the relationship between Q value and frequency is polyfited. The whole region's result is Q(f)= (44.81±15.87) · f0.9491±0.0805. Compared with other regions, the Q value of seismic coda in Ningxia and adjacent regions is relatively lower, but the dependence on frequency is higher. According to the regional seismic tectonic characteristics and the homochronous seismic activity, we divided the research region into four concentrated minor-earthquake areas: (a) Ji Lantai, (b) Yin Chuan, (c) Wei Ningtong, (d) Gu Hai, and the calculated Q values of the four regions relatively are: (a) Q(f)= (53.59±17.08)f0.9148±0.0692, (b) O(f) = (53.04± 16.29)f0.921±0.0777, (c) Q(f) = (42. 25 ± 15.03)f0.9532±0.0787, (d) Q(f) = (41.65 ± 13.46) f0.9636±0.0774. Comparison of the polyfited results shows that Q value' s distribution reflects the related region's tectonic activities and seismic activity.%本文利用Sato模型,选取2008-2009年宁夏地震台网记录的121次ML≥2.0地震的数字地震波资料,计算宁夏及邻区平均尾波Q值,并拟合了Q值对频率的依赖关系. 结果表明,与国内其他地区相比,宁夏及邻区Q值较低,对频率f依赖性较高. 结合研究区同期地震活动水平及地震地质构造特征,将研究区划分为四个小震密集区:吉兰泰地震区、银川地震区、卫宁同地震区、固海地震区. 分别统计并拟合Q值对频率的关系式为Q(f)=(53.59±17.08)f 0.9148±0.0692;Q(f)=(53.04±16.29)f 0.921±0.0777;Q(f)=(42.25±15.03)f 0.9532±0.0787及Q(f)=(41.65±13.46)f 0.9636±0.0774. 对拟合结果进行比较表明,Q值分布较好地反映了相关构造区构造活动及地震活动水平.

  4. Adjacent Segment Pathology after Anterior Cervical Fusion.

    Science.gov (United States)

    Chung, Jae Yoon; Park, Jong-Beom; Seo, Hyoung-Yeon; Kim, Sung Kyu

    2016-06-01

    Anterior cervical fusion has become a standard of care for numerous pathologic conditions of the cervical spine. However, subsequent development of clinically significant disc disease at levels adjacent to fused discs is a serious long-term complication of this procedure. As more patients live longer after surgery, it is foreseeable that adjacent segment pathology (ASP) will develop in increasing numbers of patients. Also, ASP has been studied more intensively with the recent popularity of motion preservation technologies like total disc arthroplasty. The true nature and scope of ASP remains poorly understood. The etiology of ASP is most likely multifactorial. Various factors including altered biomechanical stresses, surgical disruption of soft tissue and the natural history of cervical disc disease contribute to the development of ASP. General factors associated with disc degeneration including gender, age, smoking and sports may play a role in the development of ASP. Postoperative sagittal alignment and type of surgery are also considered potential causes of ASP. Therefore, a spine surgeon must be particularly careful to avoid unnecessary disruption of the musculoligamentous structures, reduced risk of direct injury to the disc during dissection and maintain a safe margin between the plate edge and adjacent vertebrae during anterior cervical fusion.

  5. [Atmospheric adjacency effect correction of ETM images].

    Science.gov (United States)

    Liu, Cheng-yu; Chen, Chun; Zhang, Shu-qing; Gao, Ji-yue

    2010-09-01

    It is an important precondition to retrieve the ground surface reflectance exactly for improving the subsequent product of remote sensing images and the quantitative application of remote sensing. However, because the electromagnetic wave is scattered by the atmosphere during its transmission from the ground surface to the sensor, the electromagnetic wave signal of the target received by the sensor contained the signal of the background. The adjacency effect emerges. Because of the adjacency effect, the remote sensing images become blurry, and their contrast reduces. So the ground surface reflectance retrieved from the remote sensing images is also inaccurate. Finally, the quality of subsequent product of remote sensing images and the accuracy of quantitative application of remote sensing might decrease. In the present paper, according to the radiative transfer equation, the atmospheric adjacency effect correction experiment of ETM images was carried out by using the point spread function method. The result of the experiment indicated that the contrast of the corrected ETM images increased, and the ground surface reflectance retrieved from those images was more accurate.

  6. Bilayer thickness mismatch controls domain size in biomimetic membranes

    Science.gov (United States)

    Heberle, Frederick A.; Petruzielo, Robin S.; Pan, Jianjun; Drazba, Paul; Kučerka, Norbert; Standaert, Robert F.; Feigenson, Gerald W.; Katsara, John

    2013-03-01

    In order to promote functionality, cells may alter the spatial organization of membrane lipids and proteins, including separation of liquid phases into distinct domains. In model membranes, domain size and morphology depend strongly on composition and temperature, but the physicochemical mechanisms controlling them are poorly understood. Theoretical work suggests a role for interfacial energy at domain boundaries, which may be driven in part by thickness mismatch between a domain and its surrounding bilayer. However, no direct evidence linking thickness mismatch to domain size in free-standing bilayers has been reported. We describe the use of Small Angle Neutron Scattering (SANS) to detect domains in simplified lipid-only models that mimic the composition of plasma membrane. We find that domain size is controlled by the degree of acyl chain unsaturation of low-melting temperature lipids, and that this size transition is correlated to changes in the thickness mismatch between coexisting liquid phases.

  7. Hydrophobic mismatch sorts SNARE proteins into distinct membrane domains

    Science.gov (United States)

    Milovanovic, Dragomir; Honigmann, Alf; Koike, Seiichi; Göttfert, Fabian; Pähler, Gesa; Junius, Meike; Müllar, Stefan; Diederichsen, Ulf; Janshoff, Andreas; Grubmüller, Helmut; Risselada, Herre J.; Eggeling, Christian; Hell, Stefan W.; van den Bogaart, Geert; Jahn, Reinhard

    2015-01-01

    The clustering of proteins and lipids in distinct microdomains is emerging as an important principle for the spatial patterning of biological membranes. Such domain formation can be the result of hydrophobic and ionic interactions with membrane lipids as well as of specific protein-protein interactions. Here using plasma membrane-resident SNARE proteins as model, we show that hydrophobic mismatch between the length of transmembrane domains (TMDs) and the thickness of the lipid membrane suffices to induce clustering of proteins. Even when the TMDs differ in length by only a single residue, hydrophobic mismatch can segregate structurally closely homologous membrane proteins in distinct membrane domains. Domain formation is further fine-tuned by interactions with polyanionic phosphoinositides and homo and heterotypic protein interactions. Our findings demonstrate that hydrophobic mismatch contributes to the structural organization of membranes.

  8. Dynamic-mismatch mapping for digitally-assisted DACs

    CERN Document Server

    Tang, Yongjian; van Roermund, Arthur

    2013-01-01

    This book describes a novel digital calibration technique called dynamic-mismatch mapping (DMM) to improve the performance of digital to analog converters (DACs).  Compared to other techniques, the DMM technique has the advantage of calibrating all mismatch errors without any noise penalty, which is particularly useful in order to meet the demand for high performance DACs in rapidly developing applications, such as multimedia and communication systems.   ·         Discusses fundamental performance limitations of digital to analog converters and summarizes existing design/calibration techniques; ·         Introduces a novel digital calibration technique, called dynamic-mismatch mapping (DMM) to improve both static and dynamic performance of DACs; ·         Includes two state-of-the-art DAC design examples with in-depth discussion.

  9. Potenciales evocados cognitivos: Utilidad de la mismatch negativity Cognitive evoked potentials: Perspectives for mismatch negativity

    Directory of Open Access Journals (Sweden)

    I.G. Gurtubay

    2009-01-01

    Full Text Available Las técnicas de potenciales evocados cognitivos están consideradas como largas y técnicamente complejas, por ello a pesar de su potencial utilidad, su uso en la práctica clínica no está muy extendida. Los recientes avances en el registro, análisis y mejoras en el software de manejo de estas señales, han reducido notablemente estos problemas. De entre todos los potenciales cognitivos es la Mismatch negativity, la que por sus especiales características en cuanto a requisitos de generación y probada utilidad clínica, destaca como la más prometedora. La capacidad de ser generada sin requerimientos atencionales la hace especialmente útil para la valoración de sujetos con bajo nivel de conciencia, sirviendo entre otras cosas, para predecir el despertar del coma. La incorporación de dicha técnica a la batería de técnicas neurofisiológicas que valoran el estado de estos sujetos va suponer una mejora sustancial en la evaluación de casos cuyo manejo en la práctica clínica es sumamente complejo.The techniques of cognitive evoked potentials are considered long and technically complex, which is why their use in clinical practice is not very widespread in spite of their potential utility. Recent advances in registering and analysis, together with improvement of the software managing these signals, have appreciably reduced these problems. Mismatch negativity stands out as the most promising of all the cognitive potentials due to its special characteristics regarding its generation requisites and its proven clinical utility. The fact that it can be generated without care requirements makes it especially useful for evaluating subjects with a low level of consciousness; it serves for predicting when they will emerge from a coma, amongst other uses. The incorporation of this technique into the arsenal of neurophysiological techniques for evaluating the state of these subjects will bring a substantial improvement in the evaluation of cases

  10. Neighboring extremal optimal control design including model mismatch errors

    Energy Technology Data Exchange (ETDEWEB)

    Kim, T.J. [Sandia National Labs., Albuquerque, NM (United States); Hull, D.G. [Texas Univ., Austin, TX (United States). Dept. of Aerospace Engineering and Engineering Mechanics

    1994-11-01

    The mismatch control technique that is used to simplify model equations of motion in order to determine analytic optimal control laws is extended using neighboring extremal theory. The first variation optimal control equations are linearized about the extremal path to account for perturbations in the initial state and the final constraint manifold. A numerical example demonstrates that the tuning procedure inherent in the mismatch control method increases the performance of the controls to the level of a numerically-determined piecewise-linear controller.

  11. Advanced radar detection schemes under mismatched signal models

    CERN Document Server

    Bandiera, Francesco

    2009-01-01

    Adaptive detection of signals embedded in correlated Gaussian noise has been an active field of research in the last decades. This topic is important in many areas of signal processing such as, just to give some examples, radar, sonar, communications, and hyperspectral imaging. Most of the existing adaptive algorithms have been designed following the lead of the derivation of Kelly's detector which assumes perfect knowledge of the target steering vector. However, in realistic scenarios, mismatches are likely to occur due to both environmental and instrumental factors. When a mismatched signal

  12. Heat flow distribution in Chinese continent and its adjacent areas

    Institute of Scientific and Technical Information of China (English)

    Wei Tao; Zhengkang Shen

    2008-01-01

    Using a compilation of 6980 heat flow measurements, we produce a new heat flow map for the Chinese continent and its adjacent areas. We develop an objective and integrated method to interpolate the heat flow data, taking into account both the uniformity within geological units and coherency of regional heat flow. The geologic units are outlined based on Zhang et al.'s active tectonic block model.Our heat flow model is presented in two formats: a contour map and a heat flow dataset with values on a 1 × 1° grid for the Chinese continent and its adjacent areas, reflecting detailed variations in some regions. Also provided is a resolution map which helps understand the reliability of the heat flow model. Our results reveal that (1) Heat flows in the eastern part of the Chinese continent are relatively higher than those in the western part except that in the Tibetan Plateau area. (2) Heat flows in the Ordos and North China blocks are around 60 mW/m2, and are 50-55 mW/m2 in South China except for the continental marginal sea regions. (3) Heat flow is the lowest in the Jtmggar Basin, only 35-45 mW/m2, and is 45-55 mW/m2 in the Tarim Basin. The results of this study provide an important data-set for studies on thermal and rheological structures of the Chinese continent and its adjacent areas.

  13. Climate warming, ecological mismatch at arrival and population decline in migratory birds

    Science.gov (United States)

    Saino, Nicola; Ambrosini, Roberto; Rubolini, Diego; von Hardenberg, Jost; Provenzale, Antonello; Hüppop, Kathrin; Hüppop, Ommo; Lehikoinen, Aleksi; Lehikoinen, Esa; Rainio, Kalle; Romano, Maria; Sokolov, Leonid

    2011-01-01

    Climate is changing at a fast pace, causing widespread, profound consequences for living organisms. Failure to adjust the timing of life-cycle events to climate may jeopardize populations by causing ecological mismatches to the life cycle of other species and abiotic factors. Population declines of some migratory birds breeding in Europe have been suggested to depend on their inability to adjust migration phenology so as to keep track of advancement of spring events at their breeding grounds. In fact, several migrants have advanced their spring arrival date, but whether such advancement has been sufficient to compensate for temporal shift in spring phenophases or, conversely, birds have become ecologically mismatched, is still an unanswered question, with very few exceptions. We used a novel approach based on accumulated winter and spring temperatures (degree-days) as a proxy for timing of spring biological events to test if the progress of spring at arrival to the breeding areas by 117 European migratory bird species has changed over the past five decades. Migrants, and particularly those wintering in sub-Saharan Africa, now arrive at higher degree-days and may have therefore accumulated a ‘thermal delay’, thus possibly becoming increasingly mismatched to spring phenology. Species with greater ‘thermal delay’ have shown larger population decline, and this evidence was not confounded by concomitant ecological factors or by phylogenetic effects. These findings provide general support to the largely untested hypotheses that migratory birds are becoming ecologically mismatched and that failure to respond to climate change can have severe negative impacts on their populations. The novel approach we adopted can be extended to the analysis of ecological consequences of phenological response to climate change by other taxa. PMID:20861045

  14. Mutagenic primer design for mismatch PCR-RFLP SNP genotyping using a genetic algorithm.

    Science.gov (United States)

    Yang, Cheng-Hong; Cheng, Yu-Huei; Yang, Cheng-Huei; Chuang, Li-Yeh

    2012-01-01

    Polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) is useful in small-scale basic research studies of complex genetic diseases that are associated with single nucleotide polymorphism (SNP). Designing a feasible primer pair is an important work before performing PCR-RFLP for SNP genotyping. However, in many cases, restriction enzymes to discriminate the target SNP resulting in the primer design is not applicable. A mutagenic primer is introduced to solve this problem. GA-based Mismatch PCR-RFLP Primers Design (GAMPD) provides a method that uses a genetic algorithm to search for optimal mutagenic primers and available restriction enzymes from REBASE. In order to improve the efficiency of the proposed method, a mutagenic matrix is employed to judge whether a hypothetical mutagenic primer can discriminate the target SNP by digestion with available restriction enzymes. The available restriction enzymes for the target SNP are mined by the updated core of SNP-RFLPing. GAMPD has been used to simulate the SNPs in the human SLC6A4 gene under different parameter settings and compared with SNP Cutter for mismatch PCR-RFLP primer design. The in silico simulation of the proposed GAMPD program showed that it designs mismatch PCR-RFLP primers. The GAMPD program is implemented in JAVA and is freely available at http://bio.kuas.edu.tw/gampd/.

  15. Renal Doppler Resistive Index as a Marker of Oxygen Supply and Demand Mismatch in Postoperative Cardiac Surgery Patients

    National Research Council Canada - National Science Library

    Corradi, Francesco; Brusasco, Claudia; Paparo, Francesco; Manca, Tullio; Santori, Gregorio; Benassi, Filippo; Molardi, Alberto; Gallingani, Alan; Ramelli, Andrea; Gherli, Tiziano; Vezzani, Antonella

    2015-01-01

    ... response to oxygen supply and demand mismatch. In two previous studies, RDRI has been shown to be able to detect tissue hypoperfusion and oxygenation due to occult hemorrhagic shock in hemodynamically stable polytrauma patients [4] and to correlate with levels of arterial standard base excess and expression of tissue hypoxia [5]. Mor...

  16. Visual mismatch negativity reveals automatic detection of sequential regularity violation

    Directory of Open Access Journals (Sweden)

    Gábor eStefanics

    2011-05-01

    Full Text Available Sequential regularities are abstract rules based on repeating sequences of environmental events, which are useful to make predictions about future events. As the processes underlying visual mismatch negativity (vMMN are sensitive to complex stimulus changes, this event-related potential component, like its auditory counterpart, may be an index of a primitive system of intelligence. Here we tested whether the visual system is capable to detect abstract sequential regularity in unattended stimulus sequences. In our first experiment we investigated the emergence of vMMN and other change-related activity to stimuli violating abstract rules. Red and green disk patterns were delivered in pairs. When in the majority of pairs the colors were identical within the pairs, deviant pairs with different colors for the second member of the pair elicited vMMN. Spatially more extended vMMN responses with longer latency were observed for deviants with 10% compared to 30% probability. In our second experiment utilizing oddball sequences, we tested the emergence of vMMN to violations of a concrete, feature-based rule of a repetition of a standard color. Deviant colors elicited a vMMN response in the oddball sequences. VMMN was larger for the second member of the pair, i.e. after a shorter stimulus onset asynchrony (SOA. This result corresponds to the expected SOA/(vMMN relationship. Our results show that the system underlying vMMN is sensitive to abstract probability rules and this component can be considered as a correlate of violated predictions about the characteristics of environmental events.

  17. Cross-scale feedbacks and scale mismatches as influences on cultural services and the resilience of protected areas.

    Science.gov (United States)

    Maciejewski, Kristine; De Vos, Alta; Cumming, Graeme S; Moore, Christine; Biggs, Duan

    2015-01-01

    Protected areas are a central strategy for achieving global conservation goals, but their continued existence depends heavily on maintaining sufficient social and political support to outweigh economic interests or other motives for land conversion. Thus, the resilience of protected areas can be considered a function of their perceived benefits to society. Nature-based tourism (NBT), a cultural ecosystem service, provides a key source of income to protected areas, facilitating a sustainable solution to conservation. The ability of tourism to generate income depends, however, on both the scales at which this cultural service is provided and the scales at which tourists respond to services on offer. This observation raises a set of location-, context-, and scale-related questions that need to be confronted before we can understand and value cultural service provision appropriately. We combine elements of resilience analysis with a systems ecology framework and apply this to NBT in protected areas to investigate cross-scale interactions and scale mismatches. We postulate that cross-scale effects can either have a positive effect on protected area resilience or lead to scale mismatches, depending on their interactions with cross-scale feedbacks. To demonstrate this, we compare spatial scales and nested levels of institutions to develop a typology of scale mismatches for common scenarios in NBT. In our new typology, the severity of a scale mismatch is expressed as the ratio of spatial scale to institutional level, producing 25 possible outcomes with differing consequences for system resilience. We predict that greater differences between interacting scales and levels, and greater magnitudes of cross-scale interactions, will lead to greater magnitudes of scale mismatch. Achieving a better understanding of feedbacks and mismatches, and finding ways of aligning spatial and institutional scales, will be critical for strengthening the resilience of protected areas that

  18. Educational Mismatch and Spatial Flexibility in Italian Local Labour Markets

    Science.gov (United States)

    Croce, Giuseppe; Ghignoni, Emanuela

    2015-01-01

    According to recent literature, this paper highlights the relevance of spatial mobility as an explanatory factor of the individual risk of job-education mismatch. To investigate this causal link, we use individual information about daily home-to-work commuting time and choices to relocate in a different local area to get a job. Our model takes…

  19. Responses of Transmembrane Peptide and Lipid Chains to Hydrophobic Mismatch

    Institute of Scientific and Technical Information of China (English)

    YANG Lei; LI Jian-tao; QI Hai-yan; LI Fei

    2012-01-01

    Hydrophobic mismatch between the hydrophobic length of membrane proteins and hydrophobic thickness of membranes is a crucial factor in controlling protein function and assembly.We combined fluorescence with circular dichroism(CD) and attenuated total reflection infrared(ATR-IR) spectroscopic methods to investigate the behaviors of the peptide and lipids under hydrophobic mismatch using a model peptide from the fourth transmembrane domain of natural resistance-associated macrophage protein 1 (Nramp 1),the phosphatidylcholines(PCs) and phosphatidylglycerols(PGs) with different lengths of acyl chains(14:0,16:0 and 18:0).In all PG lipid membranes,the peptide forms stable α-helix structure,and the helix axis is parallel to lipid chains.The helical span and orientation hardly change in varying thickness of PG membranes,while the lipid chains can deform to accommodate to the hydrophobic surface of embedded peptide.By comparison,the helical structures of the model peptide in PC lipid membranes are less stable.Upon incorporation with PC lipid membranes,the peptide can deform itself to accommodate to the hydrophobic thickness of lipid membranes in response to hydrophobic mismatch.In addition,hydrophobic mismatch can increase the aggregation propensity of the peptide in both PC and PG lipid membranes and the peptide in PC membranes has more aggregation tendency than that in PG membranes.

  20. Interplay between quantum confinement and dielectric mismatch for ultrashallow dopants

    NARCIS (Netherlands)

    Mol, J.A.; Salfi, J.; Miwa, J.A.; Simmons, M.Y.; Rogge, S.

    2013-01-01

    Understanding the electronic properties of dopants near an interface is a critical challenge for nanoscale devices. We have determined the effect of dielectric mismatch and quantum confinement on the ionization energy of individual acceptors beneath a hydrogen passivated silicon (100) surface. While

  1. Supply and Demand Mismatches in Training: Can Anything Be Done?

    Science.gov (United States)

    Castro, Claudio de Moura; de Andrade, Antonio Cabral

    1990-01-01

    Vocational training often fails to provide what employers need and students want. To correct supply/demand mismatches requires improving feedback from employers, increasing the flow of information, bringing schools closer to businesses, rewarding institutions for successful employment of graduates, and providing incentives for entrepreneurs. (SK)

  2. Bisimulation Lattice of Asymmetric Chi Calculus with Mismatch

    Institute of Scientific and Technical Information of China (English)

    Dong Xiaoju(董笑菊); Zhong Farong; Fu Yuxi

    2003-01-01

    This paper carries out a systematic investigation into the bisimulation lattice of asymmetric chi calculus with a mismatch combinator. It is shown that all the sixty three L-bisimilarities collapse to twelve distinct relations and they form a bisimulation lattice with respect to set inclusion. The top of the lattice coincides with the barbed bisimilarity.

  3. Understanding the Mismatch Between Coaches' and Players' Perceptions of Exertion

    NARCIS (Netherlands)

    Brink, Michel S.; Kersten, Anna W.; Frencken, Wouter G. P.

    2017-01-01

    A mismatch between the training exertion intended by a coach and the exertion perceived by players is well established in sports. However, it is unknown whether coaches can accurately observe exertion of individual players during training. Furthermore, the discrepancy in coaches' and players' percep

  4. Diagnostic criteria for constitutional mismatch repair deficiency syndrome

    DEFF Research Database (Denmark)

    Wimmer, Katharina; Kratz, Christian P; Vasen, Hans F A;

    2014-01-01

    Constitutional mismatch repair deficiency (CMMRD) syndrome is a distinct childhood cancer predisposition syndrome that results from biallelic germline mutations in one of the four MMR genes, MLH1, MSH2, MSH6 or PMS2. The tumour spectrum is very broad, including mainly haematological, brain...

  5. DNA mismatch repair: Dr. Jekyll and Mr. Hyde?

    Science.gov (United States)

    Hsieh, Peggy

    2012-09-14

    In this issue, Peña-Diaz et al. (2012) describe a pathway for somatic mutation in nonlymphoid cells termed noncanonical DNA mismatch repair, whereby the error-prone translesion polymerase Pol-η substitutes for high-fidelity replicative polymerases to resynthesize excised regions opposite DNA damage. Copyright © 2012 Elsevier Inc. All rights reserved.

  6. Mismatch of Vocational Graduates: What Penalty on French Labour Market?

    Science.gov (United States)

    Beduwe, Catherine; Giret, Jean-Francois

    2011-01-01

    This study explores individual effects of educational mismatch on wages, job satisfaction and on-the-job-search on French labour market. We distinguish between horizontal matches (job matches with field of studies) and vertical matches (job matches the level of qualification) on the one hand and skills matches (worker's assessment) on the other…

  7. Channel normalization technique for speech recognition in mismatched conditions

    CSIR Research Space (South Africa)

    Kleynhans, N

    2008-11-01

    Full Text Available , where one wishes to use any available training data for a variety of purposes. Research into a new channel normalization (CN) technique for channel mismatched speech recognition is presented. A process of inverse linear filtering is used in order...

  8. Resolving Architectural Mismatches of COTS Through Architectural Reconciliation

    NARCIS (Netherlands)

    Avgeriou, Paris; Guelfi, Nicolas

    2005-01-01

    The integration of COTS components into a system under development entails architectural mismatches. These have been tackled, so far, at the component level, through component adaptation techniques, but they also must be tackled at an architectural level of abstraction. In this paper we propose an

  9. Clinicopathologic factors identify sporadic mismatch repair-defective colon cancers

    DEFF Research Database (Denmark)

    Halvarsson, Britta; Anderson, Harald; Domanska, Katarina;

    2008-01-01

    Identification of sporadic mismatch repair (MMR)-defective colon cancers is increasingly demanded for decisions on adjuvant therapies. We evaluated clinicopathologic factors for the identification of these prognostically favorable tumors. Histopathologic features in 238 consecutive colon cancers...... and excluded 61.5% of the tumors from MMR testing. This clinicopathologic index thus successfully selects MMR-defective colon cancers. Udgivelsesdato: 2008-Feb...

  10. Mismatch-shaping switching for two-capacitor DAC

    DEFF Research Database (Denmark)

    Steensgaard-Madsen, Jesper; Moon, U.; Temes, G.C.

    1998-01-01

    A mismatch-shaping scheme is proposed for a two-capacitor digital-to-analogue converter (DAC). It uses a delta-sigma loop for finding the optimal switching sequence for each input word. Simulations indicate that the scheme can be used for the realisation of DACs with 16 bit linearity and SNR perf...

  11. Understanding the Mismatch Between Coaches' and Players' Perceptions of Exertion

    NARCIS (Netherlands)

    Brink, Michel S; Kersten, Anna W; Frencken, Wouter G

    2016-01-01

    A mismatch between the intended training exertion by the coach and the perceived exertion by players is well established in sports. However, it is unknown if coaches are able to accurately observe exertion of individual players during training. Furthermore, the discrepancy in coaches' and players' p

  12. Investigating Interaural Frequency-Place Mismatches via Bimodal Vowel Integration

    DEFF Research Database (Denmark)

    Guérit, François; Santurette, Sébastien; Chalupper, Josef;

    2014-01-01

    For patients having residual hearing in one ear and a cochlear implant (CI) in the opposite ear, interaural place-pitch mismatches might be partly responsible for the large variability in individual benefit. Behavioral pitch-matching between the two ears has been suggested as a way to individuali...

  13. Mismatch of Vocational Graduates: What Penalty on French Labour Market?

    Science.gov (United States)

    Beduwe, Catherine; Giret, Jean-Francois

    2011-01-01

    This study explores individual effects of educational mismatch on wages, job satisfaction and on-the-job-search on French labour market. We distinguish between horizontal matches (job matches with field of studies) and vertical matches (job matches the level of qualification) on the one hand and skills matches (worker's assessment) on the other…

  14. Mismatched feature detection with finer granularity for emotional speaker recognition

    Institute of Scientific and Technical Information of China (English)

    Li CHEN; Ying-chun YANG; Zhao-hui WU

    2014-01-01

    The shapes of speakers’ vocal organs change under their different emotional states, which leads to the deviation of the emotional acoustic space of short-time features from the neutral acoustic space and thereby the degradation of the speaker recognition performance. Features deviating greatly from the neutral acoustic space are considered as mismatched features, and they negatively affect speaker recognition systems. Emotion variation produces different feature deformations for different phonemes, so it is reasonable to build a fi ner model to detect mismatched features under each phoneme. However, given the difficulty of phoneme recognition, three sorts of acoustic class recognition- phoneme classes, Gaussian mixture model (GMM) tokenizer, and probabilistic GMM tokenizer- are proposed to replace phoneme recognition. We propose feature pruning and feature regulation methods to process the mismatched features to improve speaker recognition performance. As for the feature regulation method, a strategy of maximizing the between-class distance and minimizing the within-class distance is adopted to train the transformation matrix to regulate the mismatched features. Experiments conducted on the Mandarin affective speech corpus (MASC) show that our feature pruning and feature regulation methods increase the identifi cation rate (IR) by 3.64% and 6.77%, compared with the baseline GMM-UBM (universal background model) algorithm. Also, corresponding IR increases of 2.09% and 3.32% can be obtained with our methods when applied to the state-of-the-art algorithm i-vector.

  15. MUTYH and the mismatch repair system: partners in crime?

    Science.gov (United States)

    Niessen, Renée C; Sijmons, Rolf H; Ou, J; Olthof, Sandra G M; Osinga, Jan; Ligtenberg, Marjolijn J; Hogervorst, Frans B L; Weiss, Marjan M; Tops, Carli M J; Hes, Frederik J; de Bock, Geertruida H; Buys, Charles H C M; Kleibeuker, Jan H; Hofstra, Robert M W

    2006-03-01

    Biallelic germline mutations of MUTYH-a gene encoding a base excision repair protein-are associated with an increased susceptibility of colorectal cancer. Whether monoallelic MUTYH mutations also increase cancer risk is not yet clear, although there is some evidence suggesting a slight increase of risk. As the MUTYH protein interacts with the mismatch repair (MMR) system, we hypothesised that the combination of a monoallelic MUTYH mutation with an MMR gene mutation increases cancer risk. We therefore investigated the prevalence of monoallelic MUTYH mutations in carriers of a germline MMR mutation: 40 carriers of a truncating mutation (group I) and 36 of a missense mutation (group II). These patients had been diagnosed with either colorectal or endometrial cancer. We compared their MUTYH mutation frequencies with those observed in a group of 134 Dutch colorectal and endometrial cancer patients without an MMR gene mutation (0.7%) and those reported for Caucasian controls (1.5%). In group I one monoallelic MUTYH mutation was found (2.5%). In group II five monoallelic germline MUTYH mutations were found (14%), four of them in MSH6 missense mutation carriers (20%). Of all patients with an MMR gene mutation, only those with a missense mutation showed a significantly higher frequency of (monoallelic) MUTYH mutations than the Dutch cancer patients without MMR gene mutations (P = 0.002) and the published controls (P = 0.001). These results warrant further study to test the hypothesis of mutations in MMR genes (in particular MSH6) and MUTYH acting together to increase cancer risk.

  16. Pelvic incidence-lumbar lordosis mismatch results in increased segmental joint loads in the unfused and fused lumbar spine.

    Science.gov (United States)

    Senteler, Marco; Weisse, Bernhard; Snedeker, Jess G; Rothenfluh, Dominique A

    2014-07-01

    Symptomatic adjacent segment disease (ASD) has been reported to occur in up to 27 % of lumbar fusion patients. A previous study identified patients at risk according to the difference of pelvic incidence and lordosis. Patients with a difference between pelvic incidence and lumbar lordosis >15° have been found to have a 20 times higher risk for ASD. Therefore, it was the aim of the present study to investigate forces acting on the adjacent segment in relation to pelvic incidence-lumbar lordosis (PILL) mismatch as a measure of spino-pelvic alignment using rigid body modeling to decipher the underlying forces as potential contributors to degeneration of the adjacent segment. Sagittal configurations of 81 subjects were reconstructed in a musculoskeletal simulation environment. Lumbar spine height was normalized, and body and segmental mass properties were kept constant throughout the population to isolate the effect of sagittal alignment. A uniform forward/backward flexion movement (0°-30°-0°) was simulated for all subjects. Intervertebral joint loads at lumbar level L3-L4 and L4-L5 were determined before and after simulated fusion. In the unfused state, an approximately linear relationship between sagittal alignment and intervertebral loads could be established (shear: 0° flexion r = 0.36, p < 0.001, 30° flexion r = 0.48, p < 0.001; compression: 0° flexion r = 0.29, p < 0.01, 30° flexion r = 0.40, p < 0.001). Additionally, shear changes during the transition from upright to 30° flexed posture were on average 32 % higher at level L3-L4 and 14 % higher at level L4-L5 in alignments that were clinically observed to be prone to ASD. Simulated fusion affected shear forces at the level L3-L4 by 15 % (L4-L5 fusion) and 23 % (L4-S1 fusion) more for alignments at risk for ASD. Higher adjacent segment shear forces in alignments at risk for ASD already prior to fusion provide a mechanistic explanation for the clinically observed correlation between PILL mismatch and rate

  17. Band anticrossing effects in highly mismatched semiconductor alloys

    Science.gov (United States)

    Wu, Junqiao

    The first five chapters of this thesis focus on studies of band anticrossing (BAC) effects in highly electronegativity-mismatched semiconductor alloys. The concept of bandgap bowing has been used to describe the deviation of the alloy bandgap from a linear interpolation. Bowing parameters as large as 2.5 eV (for ZnSTe) and close to zero (for AlGaAs and ZnSSe) have been observed experimentally. Recent advances in thin film deposition techniques have allowed the growth of semiconductor alloys composed of significantly different constituents with ever-improving crystalline quality (e.g., GaAs1-xNx and GaP1-xNx with x bandgap bowing (bowing parameters >14 eV). A band anticrossing model has been developed to explain these properties. The model shows that the predominant bowing mechanism in these systems is driven by the anticrossing interaction between the localized level associated with the minority component and the band states of the host. In this thesis I discuss my studies of the BAC effects in these highly mismatched semiconductors. It will be shown that the results of the physically intuitive BAC model can be derived from the Hamiltonian of the many-impurity Anderson model. The band restructuring caused by the BAC interaction is responsible for a series of experimental observations such as a large bandgap reduction, an enhancement of the electron effective mass, and a decrease in the pressure coefficient of the fundamental gap energy. Results of further experimental investigations of the optical properties of quantum wells based on these materials will be also presented. It will be shown that the BAC interaction occurs not only between localized states and conduction band states at the Brillouin zone center, but also exists over all of k-space. Finally, taking ZnSTe and ZnSeTe as examples, I show that BAC also occurs between localized states and the valence band states. Soft x-ray fluorescence experiments provide direct evidence of the BAC interaction in these

  18. Band anticrossing effects in highly mismatched semiconductor alloys

    Energy Technology Data Exchange (ETDEWEB)

    Wu, Junqiao [Univ. of California, Berkeley, CA (United States)

    2002-01-01

    The first five chapters of this thesis focus on studies of band anticrossing (BAC) effects in highly electronegativity- mismatched semiconductor alloys. The concept of bandgap bowing has been used to describe the deviation of the alloy bandgap from a linear interpolation. Bowing parameters as large as 2.5 eV (for ZnSTe) and close to zero (for AlGaAs and ZnSSe) have been observed experimentally. Recent advances in thin film deposition techniques have allowed the growth of semiconductor alloys composed of significantly different constituents with ever- improving crystalline quality (e.g., GaAs1-xNx and GaP1-xNx with x ~< 0.05). These alloys exhibit many novel and interesting properties including, in particular, a giant bandgap bowing (bowing parameters > 14 eV). A band anticrossing model has been developed to explain these properties. The model shows that the predominant bowing mechanism in these systems is driven by the anticrossing interaction between the localized level associated with the minority component and the band states of the host. In this thesis I discuss my studies of the BAC effects in these highly mismatched semiconductors. It will be shown that the results of the physically intuitive BAC model can be derived from the Hamiltonian of the many-impurity Anderson model. The band restructuring caused by the BAC interaction is responsible for a series of experimental observations such as a large bandgap reduction, an enhancement of the electron effective mass, and a decrease in the pressure coefficient of the fundamental gap energy. Results of further experimental investigations of the optical properties of quantum wells based on these materials will be also presented. It will be shown that the BAC interaction occurs not only between localized states and conduction band states at the Brillouin zone center, but also exists over all of k-space. Finally, taking ZnSTe and ZnSeTe as examples, I show that BAC also

  19. Band anticrossing effects in highly mismatched semiconductor alloys

    Energy Technology Data Exchange (ETDEWEB)

    Wu, Junqiao

    2002-09-09

    The first five chapters of this thesis focus on studies of band anticrossing (BAC) effects in highly electronegativity- mismatched semiconductor alloys. The concept of bandgap bowing has been used to describe the deviation of the alloy bandgap from a linear interpolation. Bowing parameters as large as 2.5 eV (for ZnSTe) and close to zero (for AlGaAs and ZnSSe) have been observed experimentally. Recent advances in thin film deposition techniques have allowed the growth of semiconductor alloys composed of significantly different constituents with ever- improving crystalline quality (e.g., GaAs{sub 1-x}N{sub x} and GaP{sub 1-x}N{sub x} with x {approx}< 0.05). These alloys exhibit many novel and interesting properties including, in particular, a giant bandgap bowing (bowing parameters > 14 eV). A band anticrossing model has been developed to explain these properties. The model shows that the predominant bowing mechanism in these systems is driven by the anticrossing interaction between the localized level associated with the minority component and the band states of the host. In this thesis I discuss my studies of the BAC effects in these highly mismatched semiconductors. It will be shown that the results of the physically intuitive BAC model can be derived from the Hamiltonian of the many-impurity Anderson model. The band restructuring caused by the BAC interaction is responsible for a series of experimental observations such as a large bandgap reduction, an enhancement of the electron effective mass, and a decrease in the pressure coefficient of the fundamental gap energy. Results of further experimental investigations of the optical properties of quantum wells based on these materials will be also presented. It will be shown that the BAC interaction occurs not only between localized states and conduction band states at the Brillouin zone center, but also exists over all of k-space. Finally, taking ZnSTe and ZnSeTe as examples, I show that BAC also occurs between

  20. Characterization of a Thermostable 8-Oxoguanine DNA Glycosylase Specific for GO/N Mismatches from the Thermoacidophilic Archaeon Thermoplasma volcanium

    Directory of Open Access Journals (Sweden)

    Miki Fujii

    2016-01-01

    Full Text Available The oxidation of guanine (G to 7,8-dihydro-8-oxoguanine (GO forms one of the major DNA lesions generated by reactive oxygen species (ROS. The GO can be corrected by GO DNA glycosylases (Ogg, enzymes involved in base excision repair (BER. Unrepaired GO induces mismatched base pairing with adenine (A; as a result, the mismatch causes a point mutation, from G paired with cytosine (C to thymine (T paired with adenine (A, during DNA replication. Here, we report the characterization of a putative Ogg from the thermoacidophilic archaeon Thermoplasma volcanium. The 204-amino acid sequence of the putative Ogg (TVG_RS00315 shares significant sequence homology with the DNA glycosylases of Methanocaldococcus jannaschii (MjaOgg and Sulfolobus solfataricus (SsoOgg. The six histidine-tagged recombinant TVG_RS00315 protein gene was expressed in Escherichia coli and purified. The Ogg protein is thermostable, with optimal activity near a pH of 7.5 and a temperature of 60°C. The enzyme displays DNA glycosylase, and apurinic/apyrimidinic (AP lyase activities on GO/N (where N is A, T, G, or C mismatch; yet it cannot eliminate U from U/G or T from T/G, as mismatch glycosylase (MIG can. These results indicate that TvoOgg-encoding TVG_RS00315 is a member of the Ogg2 family of T. volcanium.

  1. Understanding mismatches in body size, speed and power among adolescent rugby union players.

    Science.gov (United States)

    Krause, Lyndon M; Naughton, Geraldine A; Denny, Greg; Patton, Declan; Hartwig, Tim; Gabbett, Tim J

    2015-05-01

    With adolescent sport increasingly challenged by mismatches in size, new strategies are important to maximize participation. The objectives were to (1) improve the understanding of mismatches in physical size, speed and power in adolescent rugby union players, (2) explore associations between size and performance with demographic, playing-history, and injury profiles, and (3) explore the applicability of existing criteria for age/body mass-based dispensation (playing-down) strategies. Cross-sectional study. Four hundred and eighty-five male community rugby union players were recruited from three Australian states selected to represent community-based U12, U13, U14 and U15 players. Body mass, stature, speed (10, 30, and 40 m sprints) and lower-leg power (relative peak power and relative peak force) were measured. Independent student t-tests, linear regressions and Chi square analyses were undertaken. Mean values in age groups for size, speed and power masked considerable overlap in the ranges within specific age groups of adolescent rugby players. Only a small proportion of players (approximately 5%) shared the highest and lowest tertiles for speed, relative peak power and body mass. Physical size was not related to injury. The mean body mass of current community rugby union players was above the 75th percentile on normative growth-charts. The notion that bigger, faster, and more powerful characteristics occur simultaneously in adolescent rugby players was not supported in the present study. Current practices in body mass-based criteria for playing down an age group lack a sufficient evidence for decision-making. Dispensation solely based on body mass may not address mismatch in junior rugby union. Copyright © 2014 Sports Medicine Australia. Published by Elsevier Ltd. All rights reserved.

  2. Detecting Adjacent Relativity of Engineering Drawing Entities with Container Window

    Institute of Scientific and Technical Information of China (English)

    林福严; 邱友申; 秦吉胜

    2001-01-01

    Automatic recognition and interpretation of engineering drawing plays an important role in computer aided engineering. Detecting the positional relation between entities is an important topic in this research field. In this paper the concepts of adjacent relativity and container window of drawing entities were proposed. By means of container window, the adjacent irrelative entities can be detected quickly and effectively, which speeds up the process of adjacent relativity detection. Meanwhile, the algorithm of adjacent relativity detection was discussed.

  3. Exchange coupling between laterally adjacent nanomagnets

    Science.gov (United States)

    Dey, H.; Csaba, G.; Bernstein, G. H.; Porod, W.

    2016-09-01

    We experimentally demonstrate exchange-coupling between laterally adjacent nanomagnets. Our results show that two neighboring nanomagnets that are each antiferromagnetically exchange-coupled to a common ferromagnetic bottom layer can be brought into strong ferromagnetic interaction. Simulations show that interlayer exchange coupling effectively promotes ferromagnetic alignment between the two nanomagnets, as opposed to antiferromagnetic alignment due to dipole-coupling. In order to experimentally demonstrate the proposed scheme, we fabricated arrays of pairs of elongated, single-domain nanomagnets. Magnetic force microscopy measurements show that most of the pairs are ferromagnetically ordered. The results are in agreement with micromagnetic simulations. The presented scheme can achieve coupling strengths that are significantly stronger than dipole coupling, potentially enabling far-reaching applications in Nanomagnet Logic, spin-wave devices and three-dimensional storage and computing.

  4. Mismatch Responses to Lexical Tone, Initial Consonant, and Vowel in Mandarin-Speaking Preschoolers

    Science.gov (United States)

    Lee, Chia-Ying; Yen, Huei-ling; Yeh, Pei-wen; Lin, Wan-Hsuan; Cheng, Ying-Ying; Tzeng, Yu-Lin; Wu, Hsin-Chi

    2012-01-01

    The present study investigates how age, phonological saliency, and deviance size affect the presence of mismatch negativity (MMN) and positive mismatch response (P-MMR). This work measured the auditory mismatch responses to Mandarin lexical tones, initial consonants, and vowels in 4- to 6-year-old preschoolers using the multiple-deviant oddball…

  5. Rapid identification of a major diffusion/perfusion mismatch in distal internal carotid artery or middle cerebral artery ischemic stroke

    Directory of Open Access Journals (Sweden)

    Hakimelahi Reza

    2012-11-01

    Full Text Available Abstract Background We tested the hypothesis that in patients with occlusion of the terminal internal carotid artery and/or the proximal middle cerebral artery, a diffusion abnormality of 70 ml or less is accompanied by a diffusion/perfusion mismatch of at least 100%. Methods Sixty-eight consecutive patients with terminal ICA and/or proximal MCA occlusions and who underwent diffusion/perfusion MRI within 24 hours of stroke onset were retrospectively identified. DWI and mean transit time (MTT volumes were measured. Prospectively, 48 consecutive patients were identified with the same inclusion criteria. DWI and time to peak (TTP lesion volumes were measured. A large mismatch volume was defined as an MTT or TTP abnormality at least twice the DWI lesion volume. Results In the retrospective study, 49 of 68 patients had a DWI lesion volume ≤ 70 ml (mean 20.2 ml; SEM 2.9 ml. A DWI/MTT mismatch of > 100% was observed in all 49 patients (P  100% was present in all 35 (P  Conclusions Acute stroke patients with major anterior circulation artery occlusion are exceedingly likely to have a major diffusion/perfusion mismatch if the diffusion lesion volume is 70 ml or less. This suggests that physiology-based patient assessments may be made using only vessel imaging and diffusion MRI as a simple alternative to perfusion imaging.

  6. Supply-demand mismatch transients in susceptible peri-infarct hot zones explain the origins of spreading injury depolarizations.

    Science.gov (United States)

    von Bornstädt, Daniel; Houben, Thijs; Seidel, Jessica L; Zheng, Yi; Dilekoz, Ergin; Qin, Tao; Sandow, Nora; Kura, Sreekanth; Eikermann-Haerter, Katharina; Endres, Matthias; Boas, David A; Moskowitz, Michael A; Lo, Eng H; Dreier, Jens P; Woitzik, Johannes; Sakadžić, Sava; Ayata, Cenk

    2015-03-04

    Peri-infarct depolarizations (PIDs) are seemingly spontaneous spreading depression-like waves that negatively impact tissue outcome in both experimental and human stroke. Factors triggering PIDs are unknown. Here, we show that somatosensory activation of peri-infarct cortex triggers PIDs when the activated cortex is within a critical range of ischemia. We show that the mechanism involves increased oxygen utilization within the activated cortex, worsening the supply-demand mismatch. We support the concept by clinical data showing that mismatch predisposes stroke patients to PIDs as well. Conversely, transient worsening of mismatch by episodic hypoxemia or hypotension also reproducibly triggers PIDs. Therefore, PIDs are triggered upon supply-demand mismatch transients in metastable peri-infarct hot zones due to increased demand or reduced supply. Based on the data, we propose that minimizing sensory stimulation and hypoxic or hypotensive transients in stroke and brain injury would reduce PID incidence and their adverse impact on outcome. Copyright © 2015 Elsevier Inc. All rights reserved.

  7. Compensation of multi-channel mismatches in high-speed high-resolution photonic analog-to-digital converter.

    Science.gov (United States)

    Yang, Guang; Zou, Weiwen; Yu, Lei; Wu, Kan; Chen, Jianping

    2016-10-17

    We demonstrate a method to compensate multi-channel mismatches that intrinsically exist in a photonic analog-to-digital converter (ADC) system. This system, nominated time-wavelength interleaved photonic ADC (TWI-PADC), is time-interleaved via wavelength demultiplexing/multiplexing before photonic sampling, wavelength demultiplexing channelization, and electronic quantization. Mismatches among multiple channels are estimated in frequency domain and hardware adjustment are used to approach the device-limited accuracy. A multi-channel mismatch compensation algorithm, inspired from the time-interleaved electronic ADC, is developed to effectively improve the performance of TWI-PADC. In the experiment, we configure out a 4-channel TWI-PADC system with 40 GS/s sampling rate based on a 10-GHz actively mode-locked fiber laser. After multi-channel mismatch compensation, the effective number of bit (ENOB) of the 40-GS/s TWI-PADC system is enhanced from ~6 bits to >8.5 bits when the RF frequency is within 0.1-3.1 GHz and from ~6 bits to >7.5 bits within 3.1-12.1 GHz. The enhanced performance of the TWI-PADC system approaches the limitation determined by the timing jitter and noise.

  8. Policy Debate | Education and Employment Mismatch

    Directory of Open Access Journals (Sweden)

    Mona Mourshed

    2014-12-01

    Full Text Available Editor’s note: These papers are contributions to the ‘Policy Debate’ section of International Development Policy. In this section, academics, policy-makers and practioners engage in a dialogue on global development challenges. Papers are copy-edited but not peer-reviewed. Instead, the initial thematic contribution is followed by critical comments and reactions from scholars and/or policy-makers.Authored by McKinsey’s research team, the initial paper addresses the Education to Employment challenge. It is based on McKinsey’s study, which looked at skill development in 25 different countries and investigated education-to-employment initiatives. The authors claim that the most successful efforts are those where different stakeholders interact intensively and frequently. Employers need to get involved in education, and educators should play a bigger role in employment.The paper is followed by critical comments by two authors, Beatriz Cardoso, Executive Director of Laboratório de Educação, Brazil, and Shailaja Fennell lecturer at the Centre of Development Studies, University of Cambridge, UK.This debate can be pursued on the Journal’s blog http://devpol.hypotheses.org/423.

  9. Synchronization in coupled time-delayed systems with parameter mismatch and noise perturbation

    Science.gov (United States)

    Sun, Yongzheng; Ruan, Jiong

    2009-12-01

    In this paper, a design of coupling and effective sufficient condition for stable complete synchronization and antisynchronization of a class of coupled time-delayed systems with parameter mismatch and noise perturbation are established. Based on the LaSalle-type invariance principle for stochastic differential equations, sufficient conditions guaranteeing complete synchronization and antisynchronization with constant time delay are developed. Also delay-dependent sufficient conditions for the case of time-varying delay are derived by using the Lyapunov approach for stochastic differential equations. Numerical examples fully support the analytical results.

  10. High rate of mismatch extension during reverse transcription in a single round of retrovirus replication.

    OpenAIRE

    Pulsinelli, G A; Temin, H M

    1994-01-01

    We made spleen necrosis virus-based retroviral vectors with mutations at the 3' end of the primer binding site region to observe the effects of terminal mismatches on retroviral replication. These vectors, when compared to a vector with the wild-type primer binding sequence, allowed us to assay the effects of the mutations on the viral titer during a single cycle of replication. The mutant vectors had titers that were comparable to the wild-type vector, indicating that reverse transcriptase h...

  11. Focus defect and dispersion mismatch in full-field optical coherence microscopy.

    Science.gov (United States)

    Dubois, Arnaud

    2017-03-20

    Full-field optical coherence microscopy (FFOCM) is an optical technique, based on low-coherence interference microscopy, for tomographic imaging of semi-transparent samples with micrometer-scale spatial resolution. The differences in refractive index between the sample and the immersion medium of the microscope objectives may degrade the FFOCM image quality because of focus defect and optical dispersion mismatch. These phenomena and their consequences are discussed in this theoretical paper. Experimental methods that have been implemented in FFOCM to minimize the adverse effects of these phenomena are summarized and compared.

  12. Noise and mismatch optimization for capacitive MEMS readout

    Energy Technology Data Exchange (ETDEWEB)

    Zhang Chong; Wu Qisong; Yin Tao; Yang Haigang, E-mail: yanghg@mail.ie.ac.c [Institute of Electronics, Chinese Academy of Sciences, Beijing 100190 (China)

    2009-11-15

    This paper presents a high precision CMOS readout circuit for a capacitive MEMS gyroscope. A continuous time topology is employed as well as the chopper noise cancelling technique. A detailed analysis of the noise and mismatch of the capacitive readout circuit is given. The analysis and measurement results have shown that thermal noise dominates in the proposed circuit, and several approaches should be used for both noise and mismatch optimization. The circuit chip operates under a single 5 V supply, and has a measured capacitance resolution of 0.2 aF/sq rootHz. With such a readout circuit, the gyroscope can accurately measure the angular rate with a sensitivity of 15.3 mV/{sup 0}/s. (semiconductor integrated circuits)

  13. Noise and mismatch optimization for capacitive MEMS readout

    Institute of Scientific and Technical Information of China (English)

    Zhang Chong; Wu Qisong; Yin Tao; Yang Haigang

    2009-01-01

    This paper presents a high precision CMOS readout circuit for a capacitive MEMS gyroscope. A continuous time topology is employed as well as the chopper noise cancelling technique. A detailed analysis of the noise and mismatch of the capacitive readout circuit is given. The analysis and measurement results have shown that thermal noise dominates in the proposed circuit, and several approaches should be used for both noise and mismatch optimization. The circuit chip operates under a single 5 V supply, and has a measured capacitance resolution of 0.2 aF/√Hz. With such a readout circuit, the gyroscope can accurately measure the angular rate with a sensitivity of 15.3 mV/°/s.

  14. Effect of resonant-frequency mismatch on attractors.

    Science.gov (United States)

    Wang, Xingang; Lai, Ying-Cheng; Lai, Choy Heng

    2006-06-01

    Resonant perturbations are effective for harnessing nonlinear oscillators for various applications such as controlling chaos and inducing chaos. Of physical interest is the effect of small frequency mismatch on the attractors of the underlying dynamical systems. By utilizing a prototype of nonlinear oscillators, the periodically forced Duffing oscillator and its variant, we find a phenomenon: resonant-frequency mismatch can result in attractors that are nonchaotic but are apparently strange in the sense that they possess a negative Lyapunov exponent but its information dimension measured using finite numerics assumes a fractional value. We call such attractors pseudo-strange. The transition to pesudo-strange attractors as a system parameter changes can be understood analytically by regarding the system as nonstationary and using the Melnikov function. Our results imply that pseudo-strange attractors are common in nonstationary dynamical systems.

  15. Mismatch between classroom furniture and anthropometric measures in Chilean schools.

    Science.gov (United States)

    Castellucci, H I; Arezes, P M; Viviani, C A

    2010-07-01

    Children spend about five hours per day sitting down while doing their school work. Considering this as well as the potential inadequate use of school furniture, it is likely that some anatomical-functional changes and problems in the learning process may occur. The aim of this study was to compare furniture sizes within three different schools with the anthropometric characteristics of Chilean students in the Valparaíso region, in order to evaluate the potential mismatch between them. The sample consisted of 195 volunteer students (94 male, 101 female) of the 8th grade, ranging from 12.5 to 14.5 years of age from 3 different schools. Regarding the methodology, 6 anthropometric measures (Stature, Popliteal height, Buttock-popliteal length, Elbow height while sitting, Hip width, Thigh thickness and Subscapular height) were gathered, as well as 8 dimensions from the school furniture. For the evaluation of classroom furniture a match criterion equation was defined. After considering the existing classroom furniture dimensions in each match criterion equation, the anthropometric characteristics of the considered population were compared in order to determine the mismatch between them. Results indicated that seat height, which should be considered as the starting point for the design of classroom furniture, was appropriate for students' popliteal height in only 14% of the 2 out of the 3 schools, and 28% in the third. Seat to desk height was too high and mismatched 99% of the students in one school and 100% in the others. Therefore, it was possible to conclude that the classroom's furniture was inadequate in almost all the analyzed cases and subjects. It is possible that the high mismatch percentage found between furniture and students' anthropometry can be associated to the fact that the acquisition and selection of the furniture was made without any ergonomic concern or criteria.

  16. Match mismatch processes underlie human hippocampal responses to associative novelty.

    Science.gov (United States)

    Kumaran, Dharshan; Maguire, Eleanor A

    2007-08-08

    The hippocampus has long been proposed to play a critical role in novelty detection through its ability to act as a comparator between past and present experience. A recent study provided evidence for this hypothesis by characterizing hippocampal responses to sequence novelty, a type of associative novelty where familiar items appear in a new temporal order. Here, we ask whether a hippocampal match-mismatch (i.e., comparator) mechanism operates selectively to identify the violation of predictions within the temporal domain or instead also underlies the processing of associative novelty in other domains (e.g., spatial). We used functional magnetic resonance imaging and a repetition paradigm in which subjects viewed sequences of objects presented in distinct locations on the screen and performed an incidental target detection task. The left hippocampus exhibited a pattern of activity consistent with that of an associative match-mismatch detector, with novelty signals generated only in conditions where one contextual component was novel and the other repeated. In contrast, right hippocampal activation signaled the presence of objects in familiar locations. Our results suggest that hippocampal match-mismatch computations constitute a general mechanism underpinning the processing of associative novelty. These findings support a model in which hippocampal mismatch signals rely critically on the recall of previous experience, a process that only occurs when novel sensory inputs overlap significantly with stored representations. More generally, the current study also offers insights into how the hippocampus automatically represents the spatiotemporal context of our experiences, a function that may relate to its role in episodic memory.

  17. Phenotypic mismatches reveal escape from arms-race coevolution.

    Science.gov (United States)

    Hanifin, Charles T; Brodie, Edmund D; Brodie, Edmund D

    2008-03-11

    Because coevolution takes place across a broad scale of time and space, it is virtually impossible to understand its dynamics and trajectories by studying a single pair of interacting populations at one time. Comparing populations across a range of an interaction, especially for long-lived species, can provide insight into these features of coevolution by sampling across a diverse set of conditions and histories. We used measures of prey traits (tetrodotoxin toxicity in newts) and predator traits (tetrodotoxin resistance of snakes) to assess the degree of phenotypic mismatch across the range of their coevolutionary interaction. Geographic patterns of phenotypic exaggeration were similar in prey and predators, with most phenotypically elevated localities occurring along the central Oregon coast and central California. Contrary to expectations, however, these areas of elevated traits did not coincide with the most intense coevolutionary selection. Measures of functional trait mismatch revealed that over one-third of sampled localities were so mismatched that reciprocal selection could not occur given current trait distributions. Estimates of current locality-specific interaction selection gradients confirmed this interpretation. In every case of mismatch, predators were "ahead" of prey in the arms race; the converse escape of prey was never observed. The emergent pattern suggests a dynamic in which interacting species experience reciprocal selection that drives arms-race escalation of both prey and predator phenotypes at a subset of localities across the interaction. This coadaptation proceeds until the evolution of extreme phenotypes by predators, through genes of large effect, allows snakes to, at least temporarily, escape the arms race.

  18. Phenotypic mismatches reveal escape from arms-race coevolution.

    Directory of Open Access Journals (Sweden)

    Charles T Hanifin

    2008-03-01

    Full Text Available Because coevolution takes place across a broad scale of time and space, it is virtually impossible to understand its dynamics and trajectories by studying a single pair of interacting populations at one time. Comparing populations across a range of an interaction, especially for long-lived species, can provide insight into these features of coevolution by sampling across a diverse set of conditions and histories. We used measures of prey traits (tetrodotoxin toxicity in newts and predator traits (tetrodotoxin resistance of snakes to assess the degree of phenotypic mismatch across the range of their coevolutionary interaction. Geographic patterns of phenotypic exaggeration were similar in prey and predators, with most phenotypically elevated localities occurring along the central Oregon coast and central California. Contrary to expectations, however, these areas of elevated traits did not coincide with the most intense coevolutionary selection. Measures of functional trait mismatch revealed that over one-third of sampled localities were so mismatched that reciprocal selection could not occur given current trait distributions. Estimates of current locality-specific interaction selection gradients confirmed this interpretation. In every case of mismatch, predators were "ahead" of prey in the arms race; the converse escape of prey was never observed. The emergent pattern suggests a dynamic in which interacting species experience reciprocal selection that drives arms-race escalation of both prey and predator phenotypes at a subset of localities across the interaction. This coadaptation proceeds until the evolution of extreme phenotypes by predators, through genes of large effect, allows snakes to, at least temporarily, escape the arms race.

  19. Induced Diffraction in Phase-Mismatched Second-Harmonic Generation

    Institute of Scientific and Technical Information of China (English)

    SU Wen-Hua; QIAN Lie-Jia; FU Xi-Quan; YANG Hua; ZHU He-Yuan

    2007-01-01

    We show analytically that in phase-mismatched second-harmonic generation,an effective diffraction is induced at the second-harmonic (SH) frequency.Numerical simulation results agree with the analytical predictions.Compared to the case of linear propagation,the effect of the overall diffraction at the SH frequency becomes doubled due to the induced diffraction,which causes an interesting result that the SH beam width will be larger than that of the fundamental field.

  20. Energy Detection of Multilevel PAM Signals with Systematic Threshold Mismatch

    Directory of Open Access Journals (Sweden)

    Antti Anttonen

    2009-01-01

    Full Text Available We address a symbol decision problem with spectrally efficient energy detected multilevel pulse amplitude modulated (PAM signals. First, we analytically quantify the relationship between a systematic threshold mismatch and the required increase of the average signal-to-noise ratio to preserve a desired symbol error rate. For the case in which such an increase is not tolerable, we present a novel near-optimal multilevel threshold selection scheme, which is accurate for a wide range of system parameters.

  1. Mismatch Negativity Based Neurofeedback for Cochlear Implant Users

    NARCIS (Netherlands)

    Luckmann, Annika; Başkent, Deniz; Jolij, Jacob

    2015-01-01

    Cochlear implant (CI) users experience great difficulty when it comes to pitch discrimination. This leads to problems during daily interactions, due to poor speech perception, but also a very low pleasure ratings for music. Improving pitch perception and discrimination in CI users would improve thei

  2. Mismatch Negativity Based Neurofeedback for Cochlear Implant Users

    NARCIS (Netherlands)

    Luckmann, Annika; Başkent, Deniz; Jolij, Jacob

    2015-01-01

    Cochlear implant (CI) users experience great difficulty when it comes to pitch discrimination. This leads to problems during daily interactions, due to poor speech perception, but also a very low pleasure ratings for music. Improving pitch perception and discrimination in CI users would improve thei

  3. Mismatch Negativity Based Neurofeedback for Cochlear Implant Users

    NARCIS (Netherlands)

    Luckmann, Annika; Başkent, Deniz; Jolij, Jacob

    2015-01-01

    Cochlear implant (CI) users experience great difficulty when it comes to pitch discrimination. This leads to problems during daily interactions, due to poor speech perception, but also a very low pleasure ratings for music. Improving pitch perception and discrimination in CI users would improve

  4. Educational mismatch in the labour market: overqualification and its implications

    Directory of Open Access Journals (Sweden)

    Marija Bečić

    2013-12-01

    Full Text Available Educational mismatch as a labour market disruption has lately attracted the interest of many economic experts and scholars. This interest is spurred by considerable improvements in the educational profile of the population, combined with changes in the demand for highly-qualified workers linked to technological developments. The mismatch can appear if an increase in highly-qualified workforce supply is not accom - panied by an equal growth in the demand. Overqualification is one such type of mismatch: it means that knowledge and skills acquired during formal education remain unused in the workplace. Many economies face this problem that can have negative consequences for individuals, businesses, and the government alike. This paper provides an overview of the basic concepts related to overqualification, focusing on the possible implications of this phenomenon, given that employee dissatisfaction can affect businesses and their productivity, and ultimately, the country as a whole. Systematization of previous research and analysis of the basic concepts related to overqualification can contribute to the literature in economics of education in Croatia and create a foundation for future research

  5. Semiblind Hyperspectral Unmixing in the Presence of Spectral Library Mismatches

    Science.gov (United States)

    Fu, Xiao; Ma, Wing-Kin; Bioucas-Dias, Jose M.; Chan, Tsung-Han

    2016-09-01

    The dictionary-aided sparse regression (SR) approach has recently emerged as a promising alternative to hyperspectral unmixing (HU) in remote sensing. By using an available spectral library as a dictionary, the SR approach identifies the underlying materials in a given hyperspectral image by selecting a small subset of spectral samples in the dictionary to represent the whole image. A drawback with the current SR developments is that an actual spectral signature in the scene is often assumed to have zero mismatch with its corresponding dictionary sample, and such an assumption is considered too ideal in practice. In this paper, we tackle the spectral signature mismatch problem by proposing a dictionary-adjusted nonconvex sparsity-encouraging regression (DANSER) framework. The main idea is to incorporate dictionary correcting variables in an SR formulation. A simple and low per-iteration complexity algorithm is tailor-designed for practical realization of DANSER. Using the same dictionary correcting idea, we also propose a robust subspace solution for dictionary pruning. Extensive simulations and real-data experiments show that the proposed method is effective in mitigating the undesirable spectral signature mismatch effects.

  6. Halo formation from mismatched beam-beam interactions

    Energy Technology Data Exchange (ETDEWEB)

    Qiang, Ji

    2003-05-23

    In this paper, we report on the halo formation and emittance growth driven by a parametric resonance during mismatched beam-beam collisions. In the regime of the weak-strong beam-beam interaction, if two beams have the same machine tunes, on-axis head-on collisions between a mismatched strong beam and a weak beam will not cause the formation of halo. However, if the two beams collide with an initial offset, the beam-beam force from the mismatched strong beam can cause halo formation and emittance growth in the weak beam. Meanwhile, if two beams have different machine tunes, for opposite charged colliding beams, when the machine tune of the weak beam is smaller than that of strong beam, there is emittance growth in the weak beam. When the machine tune of the weak beam is larger than that of the strong beam, there is little emittance growth. In the regime of strong-strong beam-beam interaction, halo is formed in both beams even when the two beams collide head-on on the axis with equal machine tunes. This puts a strong requirement for a good beam match during the injection to colliders in order to avoid the emittance growth.

  7. Infra-red parametric generation: Phase mismatch condition

    Energy Technology Data Exchange (ETDEWEB)

    Ghosh, S.; Dubey, Swati; Jain, Kamal, E-mail: Jainrupam1987@gmail.com [School of Studies in Physics, Vikram University, Ujjain (M.P.) India-456010 (India)

    2015-07-31

    An analytical investigation is made for the Infrared parametric generation in doped semiconductor plasma under phase mismatch condition. Theoretical formulations are undertaken to determine induced polarization and threshold pump field for the onset of parametric generation in semiconductor plasma medium. The origin of this nonlinear interaction lies in the second order optical susceptibility arising due to the induced nonlinear current density in piezoelectric medium. Numerical estimations are made for n- type InSb at 77 K duly irradiated by a pulsed 10.6µm CO{sub 2} laser. It is very difficult to attain exact phase matching in experimental frame so we have considered a tolerable small phase mismatch in order to attain a new result. Its effect on the Infrared parametric generation in compound semiconductor is examined through induced polarization. Transmitted intensity is determined to have an idea about conversion efficiency of the said process. Phase mismatch tends to raise the required pump field to stimulate the parametric generation. Transmitted intensity is found to decrease with coherence length lc and increase carrier concentration n{sub 0}, which is favorable for improved conversion efficiency.

  8. Infra-red parametric generation: Phase mismatch condition

    Science.gov (United States)

    Ghosh, S.; Dubey, Swati; Jain, Kamal

    2015-07-01

    An analytical investigation is made for the Infrared parametric generation in doped semiconductor plasma under phase mismatch condition. Theoretical formulations are undertaken to determine induced polarization and threshold pump field for the onset of parametric generation in semiconductor plasma medium. The origin of this nonlinear interaction lies in the second order optical susceptibility arising due to the induced nonlinear current density in piezoelectric medium. Numerical estimations are made for n- type InSb at 77 K duly irradiated by a pulsed 10.6µm CO2 laser. It is very difficult to attain exact phase matching in experimental frame so we have considered a tolerable small phase mismatch in order to attain a new result. Its effect on the Infrared parametric generation in compound semiconductor is examined through induced polarization. Transmitted intensity is determined to have an idea about conversion efficiency of the said process. Phase mismatch tends to raise the required pump field to stimulate the parametric generation. Transmitted intensity is found to decrease with coherence length lc and increase carrier concentration n0, which is favorable for improved conversion efficiency.

  9. Immunoscore in mismatch repair-proficient and -deficient colon cancer.

    Science.gov (United States)

    Wirta, Erkki-Ville; Seppälä, Toni; Friman, Marjukka; Väyrynen, Juha; Ahtiainen, Maarit; Kautiainen, Hannu; Kuopio, Teijo; Kellokumpu, Ilmo; Mecklin, Jukka-Pekka; Böhm, Jan

    2017-07-01

    The aim of this study was to investigate immune response and its prognostic significance in colon carcinomas using the previously described Immunoscore (IS). A population-based series of 779 colorectal cancers, operated on between 2000 and 2010, were classified according to tumour, node, metastasis (TNM) status, mismatch repair (MMR), and BRAF mutation status. Rectal cancer cases (n = 203) were excluded as a high proportion of these patients received preoperative neoadjuvant chemoradiotherapy. Tissue microarray (TMA) samples collected from the tumour centre and invasive front were immunostained for CD3 and CD8. Lymphocytes were then digitally calculated to categorize IS from grade 0 to 4. Samples adequate for IS were available from 510 tumours. IS was significantly associated with AJCC/UICC stage, T stage, lymph node and distant metastases, perineural and lymphovascular invasion, MMR status, and BRAF mutation status. For IS0, IS1, IS2, IS3 and IS4, respectively, the 5-year disease-free survival (DFS) rates were 59, 68, 78, 83 and 94% (p < 0.001); 5-year disease-specific survival (DSS) rates were 47, 55, 75, 80, and 89% (p < 0.001); and 5-year overall survival (OS) rates were 40, 44, 66, 61, and 76% (p < 0.001). IS was also prognostic for DFS, DSS, and OS within subsets of microsatellite-stable (MSS) and microsatellite-instable (MSI) disease. Multivariable analysis showed that IS, AJCC/UICC stage, lymphovascular invasion, and lymph node ratio in AJCC/UICC stage III disease were independent prognostic factors for DFS, DSS, and OS. Age was an independent prognostic factor for DSS and OS. Gender and BRAF mutation were independent prognostic factors for OS. In conclusion, IS differentiated patients with poor versus improved prognosis in MSS and MSI disease and across AJCC/UICC stages. IS, AJCC/UICC stage, lymphovascular invasion, and lymph node ratio in AJCC/UICC stage III disease were independent prognostic factors for DFS, DSS, and OS.

  10. Does PGA external stenting reduce compliance mismatch in venous grafts?

    Directory of Open Access Journals (Sweden)

    Zou Liang-jian

    2007-04-01

    Full Text Available Abstract Background Autogenous vein grafting is widely used in regular bypassing procedures. Due to its mismatch with the host artery in both mechanical property and geometry, the graft often over expands under high arterial blood pressure and forms a step-depth where eddy flow develops, thus causing restenosis, fibrous graft wall, etc. External stents, such as sheaths being used to cuff the graft, have been introduced to eliminate these mismatches and increase the patency. Although histological and immunochemical studies have shown some positive effects of the external stent, the mechanical mismatch under the protection of an external stent remains poorly analyzed. Methods In this study, the jugular veins taken from hypercholesterolemic rabbits were transplanted into the carotid arteries, and non-woven polyglycolic acid (PGA fabric was used to fabricate the external stents to study the effect of the biodegradable external stent. Eight weeks after the operation, the grafts were harvested to perform mechanical tests and histological examinations. An arc tangent function was suggested to describe the relationship between pressure and cross-sectional area to analyse the compliance of the graft. Results The results from the mechanical tests indicated that grafts either with or without external stents displayed large compliance in the low-pressure range and were almost inextensible in the high-pressure range. This was very different from the behavior of the arteries or veins in vivo. The data from histological tests showed that, with external stents, collagen fibers were more compact, whilst those in the graft without protection were looser and thicker. No elastic fiber was found in either kind of grafts. Furthermore, grafts without protection were over-expanded which resulted in much bigger cross-sectional areas. Conclusion The PGA external extent contributes little to the reduction of the mechanical mismatch between the graft and its host artery

  11. DPT tautomerisation of the G·A(syn) and A*·G*(syn) DNA mismatches: a QM/QTAIM combined atomistic investigation.

    Science.gov (United States)

    Brovarets', Ol'ha O; Hovorun, Dmytro M

    2014-05-21

    By applying a combined QM and QTAIM atomistic computational approach we have established for the first time that the G·A(syn) and A*·G*(syn) DNA mismatches (rare tautomers are marked with an asterisk), causing spontaneous transversions with substantially various probabilities, radically differ from each other in their ability to tautomerise through the double proton transfer (DPT). The A*·G*(syn) mismatch tautomerises quite easily (ΔΔG(TS) ≈ 4·kT at room temperature) into the A·G*(syn) mismatch through the asynchronous concerted mechanism, whereas the G·A(syn) base mispair does not tautomerise via the DPT at all, since there is no local minimum corresponding to the tautomerised G*·A*(syn) mismatch on the potential energy surface. It was established that the A·G*(syn) base mispair is a dynamically unstable H-bonded complex with an extremely short lifetime of 2.17 × 10(-13) s. Consequently, the obtained results allow us to believe that spontaneous or forced dissociation of both the G·A(syn) and A*·G*(syn) DNA mismatches by the DNA-polymerase occurs with the preservation of the tautomeric status of the bases.

  12. Effect of parameter mismatch on the dynamics of strongly coupled self sustained oscillators

    Science.gov (United States)

    Chakrabarty, Nilaj; Jain, Aditya; Lal, Nijil; Das Gupta, Kantimay; Parmananda, Punit

    2017-01-01

    In this paper, we present an experimental setup and an associated mathematical model to study the synchronization of two self-sustained, strongly coupled, mechanical oscillators (metronomes). The effects of a small detuning in the internal parameters, namely, damping and frequency, have been studied. Our experimental system is a pair of spring wound mechanical metronomes; coupled by placing them on a common base, free to move along a horizontal direction. We designed a photodiode array based non-contact, non-magnetic position detection system driven by a microcontroller to record the instantaneous angular displacement of each oscillator and the small linear displacement of the base, coupling the two. In our system, the mass of the oscillating pendula forms a significant fraction of the total mass of the system, leading to strong coupling of the oscillators. We modified the internal mechanism of the spring-wound "clockwork" slightly, such that the natural frequency and the internal damping could be independently tuned. Stable synchronized and anti-synchronized states were observed as the difference in the parameters was varied in the experiments. The simulation results showed a rapid increase in the phase difference between the two oscillators beyond a certain threshold of parameter mismatch. Our simple model of the escapement mechanism did not reproduce a complete 180° out of phase state. However, the numerical simulations show that increased mismatch in parameters leads to a synchronized state with a large phase difference.

  13. Seismic anisotropy of upper mantle in Sichuan and adjacent regions

    Institute of Scientific and Technical Information of China (English)

    CHANG LiJun; WANG ChunYong; DING ZhiFeng

    2008-01-01

    Based on the polarization analysis of teleseismic SKS waveform data recorded at 94 broadband seismic stations in Sichuan and adjacent regions, the SKS fast-wave direction and the delay time between the fast and slow shear waves were determined at each station using the grid searching method of minimum transverse energy and the stacking analysis method, and the image of upper mantle anisotropy was acquired. The fast-wave polarization directions are mainly NW-SE in the study area,NWW-SEE to its northeast and NS to its west. The delay time falls into the interval [0.47 s, 1.68 s]. The spatial variation of the fast-wave directions is similar to the variation of GPS velocity directions. The anisotropic image indicates that the regional tectonic stress field has resulted in deformation and flow of upper mantle material, and made the alignment of upper mantle peridotite lattice parallel to the direction of material deformation. The crust-upper mantle deformation in Sichuan and adjacent regions accords with the mode of vertically coherent deformation. In the eastern Tibetan Plateau, the crustal material was extruded to east or southeast clue to SE traction force of the upper mantle material. The extrusion might be obstructed by a rigid block under the Sichuan Basin and the crust has been deformed. After a long-term accumulation of tectonic strain energy, the accumulative energy suddenly released in Yingxiu town of the Longmenshan region, and Wenchuan Ms8.0 earthquake occurred.

  14. Interaction between Adjacent Lightning Discharges in Clouds

    Institute of Scientific and Technical Information of China (English)

    WANG Yanhui; ZHANG Guangshu; ZHANG Tong; LI Yajun; WU Bin; ZHANG Tinglong

    2013-01-01

    Using a 3D lightning radiation source locating system (LLS),three pairs of associated lightning discharges (two or more adjacent lightning discharges following an arbitrary rule that their space-gap was less than 10 km and their time-gap was less than 800 ms) were observed,and the interaction between associated lightning discharges was analyzed.All these three pairs of associated lightning discharges were found to involve three or more charge regions (the ground was considered as a special charge region).Moreover,at least one charge region involved two lightning discharges per pair of associated lightning discharges.Identified from electric field changes,the subsequent lightning discharges were suppressed by the prior lightning discharges.However,it is possible that the prior lightning discharge provided a remaining discharge channel to facilitate the subsequent lightning discharge.The third case provided evidence of this possibility.Together,the results suggested that,if the charges in the main negative charge region can be consumed using artificial lightning above the main negative charge regions,lightning accidents on the ground could be greatly reduced,on the condition that the height of the main negative charge region and the charge intensity of the lower positive charge region are suitable.

  15. An optimization study for viscous dampers between adjacent buildings

    Science.gov (United States)

    Kandemir-Mazanoglu, Elif Cagda; Mazanoglu, Kemal

    2017-05-01

    This paper investigates optimum viscous damper capacity and number for prevention of one-sided structural pounding between two adjacent buildings under earthquake motion. The buildings assumed as shear-type structures are modeled by using lumped mass-stiffness technique. Impact forces due to pounding is simulated by nonlinear elastic spring approximation called Hertz model. A parametric study is conducted by varying storey number and stiffness of buildings in addition to the capacity of the viscous dampers. Pounding force and supplemental damping ratio for each case are presented based upon newly defined nondimensional natural frequency parameter ratio. An optimization procedure for determination of viscous damper capacity is developed based on modified supplemental damping ratio equation. Results are compared with each other to clarify the effect of variation in building parameters on pounding forces and viscous damper capacity.

  16. Soil Structure Interaction between Two Adjacent Buildings under Earthquake Load

    Directory of Open Access Journals (Sweden)

    Mahmoud Yahyai

    2008-01-01

    Full Text Available In some cases, tall buildings are located in geotechnically unsuitable places, due to their high ratio of height to width; there is risk of uplift and other effects such as overturning and reduction structure serviceability during earthquake. This research is aimed to evaluate the effect of Soil-Structure Interaction (SSI on seismic behavior of two adjacent 32 story buildings such as time period, base shear and displacements. The interaction effects are investigated for variable distance between the two buildings. Three types of soil such as soft clay, sandy gravel and compacted sandy gravel are considered for this study. The result obtained that the interaction effect increases time period of both buildings base shear and lateral displacement of the structures increases.

  17. Construction of heteroduplex DNA and in vitro model for functional analysis of mismatch repair

    Institute of Scientific and Technical Information of China (English)

    WANG Yi; Clark Alan; WANG Jiaxun; SUN Menghong; SHI Daren

    2004-01-01

    Functional deficiency of mismatch repair (MMR) system is one of the mechanisms of tumorigenesis. With the development of the investigation and the requirement from the clinical diagnosis and treatment it is necessary to build up a method to evaluate the functional status of the whole MMR system in the concerned tumors. The original ssDNA and dsDNA from wild type (wt) bacteriophage M13mp2 and its three derivates with mutation points in the lacZα Gene have been used to construct two kinds of heteroduplex DNA molecules. One named del(2) has two bases deleted in the negative strand, the other has a G·G mismatch base pair in the negative strand too. Introducing this heteroduplex DNA into E. Coli NR9162 (mutS-) without the MMR ability on the indicator plate with x-gal and IPTG, there are three kinds of plaques, mixture plaque as the characteristic phenotype of heteroduplex DNA, blue and clear plaques. If the cell extract is mismatch repair competent the percentage of the mixture plaque will decrease after incubation with these heteroduplex DNA, the repair efficiency is expressed in percentage as 100× (1 minus the ratio of percentages of mixture plaque obtained from the extract-treated sample and untreated samples), which can imply the functional status of MMR system of certain samples. After large T-antigen-dependent SV-40 DNA replication assay cell extract from TK6, a human lymphoblastoid B-cell lymphoma cell line with MMR ability, and Lovo, a human colonic carcinoma cell line with MMR deficiency have incubated with these heteroduplex DNA. The repair efficiency of TK6 to del(2) is more than 60%, to G·G is more than 50%. The Lovo efficiency to del(2) is less than 10%, to G·G is less than 20%. Therefore, in this in vitro model used for functional analysis of mismatch repair of heteroduplex DNA as the repair target, TK6 can serve as the control for MMR proficiency and Lovo as the control for MMR deficiency. Using this model the tumor tissue from a case of hereditary

  18. Numerical simulations of material mismatch and ductile crack growth

    Energy Technology Data Exchange (ETDEWEB)

    Oestby, Erling

    2002-07-01

    Both the global geometry and inhomogeneities in material properties will influence the fracture behaviour of structures in presence of cracks. In this thesis numerical simulations have been used to investigate how some aspects of both these issues affect the conditions at the crack-tip. The thesis is organised in an introduction chapter, summarising the major findings and conclusions, a review chapter, presenting the main aspects of the developments in the field of fracture mechanics, and three research papers. Paper I considers the effect of mismatch in hardening exponent on the local near-tip stress field for stationary interface cracks in bi-materials under small scale yielding conditions. It is demonstrated that the stress level in the weaker material increases compared to what is found in the homogeneous material for the same globally applied load level, with the effect being of increasing importance as the crack-tip is approached. Although a coupling between the radial and angular dependence of the stress fields exists, the evolving stress field can still be normalised with the applied J. The effect on the increase in stress level can closely be characterised by the difference in hardening exponent, {delta}n, termed the hardening mismatch, and is more or less independent of the absolute level of hardening in the two materials. Paper II and Ill deal with the effects of geometry, specimen size, hardening level and yield stress mismatch in relation to ductile crack growth. The ductile crack growth is simulated through use of the Gurson model. In Paper H the effect of specimen size on the crack growth resistance is investigated for deep cracked bend and shallow cracked tensile specimens. At small amounts of crack growth the effect of specimen size on the crack growth resistance is small, but a more significant effect is found for larger amounts of crack growth. The crack growth resistance decreases in smaller specimens loaded in tension, whereas the opposite is

  19. Measurement Matrix Optimization and Mismatch Problem Compensation for DLSLA 3-D SAR Cross-Track Reconstruction

    Science.gov (United States)

    Bao, Qian; Jiang, Chenglong; Lin, Yun; Tan, Weixian; Wang, Zhirui; Hong, Wen

    2016-01-01

    With a short linear array configured in the cross-track direction, downward looking sparse linear array three-dimensional synthetic aperture radar (DLSLA 3-D SAR) can obtain the 3-D image of an imaging scene. To improve the cross-track resolution, sparse recovery methods have been investigated in recent years. In the compressive sensing (CS) framework, the reconstruction performance depends on the property of measurement matrix. This paper concerns the technique to optimize the measurement matrix and deal with the mismatch problem of measurement matrix caused by the off-grid scatterers. In the model of cross-track reconstruction, the measurement matrix is mainly affected by the configuration of antenna phase centers (APC), thus, two mutual coherence based criteria are proposed to optimize the configuration of APCs. On the other hand, to compensate the mismatch problem of the measurement matrix, the sparse Bayesian inference based method is introduced into the cross-track reconstruction by jointly estimate the scatterers and the off-grid error. Experiments demonstrate the performance of the proposed APCs’ configuration schemes and the proposed cross-track reconstruction method. PMID:27556471

  20. Measurement Matrix Optimization and Mismatch Problem Compensation for DLSLA 3-D SAR Cross-Track Reconstruction.

    Science.gov (United States)

    Bao, Qian; Jiang, Chenglong; Lin, Yun; Tan, Weixian; Wang, Zhirui; Hong, Wen

    2016-08-22

    With a short linear array configured in the cross-track direction, downward looking sparse linear array three-dimensional synthetic aperture radar (DLSLA 3-D SAR) can obtain the 3-D image of an imaging scene. To improve the cross-track resolution, sparse recovery methods have been investigated in recent years. In the compressive sensing (CS) framework, the reconstruction performance depends on the property of measurement matrix. This paper concerns the technique to optimize the measurement matrix and deal with the mismatch problem of measurement matrix caused by the off-grid scatterers. In the model of cross-track reconstruction, the measurement matrix is mainly affected by the configuration of antenna phase centers (APC), thus, two mutual coherence based criteria are proposed to optimize the configuration of APCs. On the other hand, to compensate the mismatch problem of the measurement matrix, the sparse Bayesian inference based method is introduced into the cross-track reconstruction by jointly estimate the scatterers and the off-grid error. Experiments demonstrate the performance of the proposed APCs' configuration schemes and the proposed cross-track reconstruction method.

  1. Measurement Matrix Optimization and Mismatch Problem Compensation for DLSLA 3-D SAR Cross-Track Reconstruction

    Directory of Open Access Journals (Sweden)

    Qian Bao

    2016-08-01

    Full Text Available With a short linear array configured in the cross-track direction, downward looking sparse linear array three-dimensional synthetic aperture radar (DLSLA 3-D SAR can obtain the 3-D image of an imaging scene. To improve the cross-track resolution, sparse recovery methods have been investigated in recent years. In the compressive sensing (CS framework, the reconstruction performance depends on the property of measurement matrix. This paper concerns the technique to optimize the measurement matrix and deal with the mismatch problem of measurement matrix caused by the off-grid scatterers. In the model of cross-track reconstruction, the measurement matrix is mainly affected by the configuration of antenna phase centers (APC, thus, two mutual coherence based criteria are proposed to optimize the configuration of APCs. On the other hand, to compensate the mismatch problem of the measurement matrix, the sparse Bayesian inference based method is introduced into the cross-track reconstruction by jointly estimate the scatterers and the off-grid error. Experiments demonstrate the performance of the proposed APCs’ configuration schemes and the proposed cross-track reconstruction method.

  2. ZOOGEOGRAPHICAL ZONING OF THE MEDITERRANEAN AND ADJACENT TERRITORIES

    Directory of Open Access Journals (Sweden)

    H. A. Ketenchiev

    2013-01-01

    Full Text Available Abstract. Aim. The article considers the zoogeographical zoning of the Mediterranean and adjacent territories with the purpose of specification of the scheme of zoogeographic zoning of land on the basis of the distribution of dragonflies.Methods. Use common methods of entomological research, mapping and analysis of the fauna.Results. On the based on our analysis of the composition and distribution of odonatofauna Mediterranean zoogeographical subregion is offered to divide into 5 provinces: Caucasian, South-European, Pyrenees, Asian and African. Analysis of the existing schemes zoning of land based on the distribution of taxa dragonflies, installed the advantages and disadvantages presented by different authors, the result of which is proposed to change the borders between the Holarctic and Subholarctic areas of the Boreal fauna Kingdom (BFK. It is connected with the fact that the dividing them into subdomains and evaluation role in the establishment of regional odonatofauna not always convincing. In this regard, the article proposed to abolish the Holarctic region sub-region: European and Mongolian-Kazakh, and in Subholarctic - add 1 sub-region of Central Asia. In a new form Subholarctic region becomes clear and logical configuration, but her name becomes inadequate, therefore, we re-name it in Paleosubtropical.The scope of the results. In fundamental research on systematics of animals, ecology and biogeography.Main conclusions. Based on the study of the composition and distribution of taxa of dragonflies in the Mediterranean and adjacent territories proposed the division of the Mediterranean subregion 5 provinces and refined scheme of zoogeographic zoning of land.

  3. Analysis of adjacent segment reoperation after lumbar total disc replacement

    OpenAIRE

    Rainey, Scott; Blumenthal, Scott L.; Zigler, Jack E.; Guyer, Richard D.; Ohnmeiss, Donna D.

    2012-01-01

    Background Fusion has long been used for treating chronic back pain unresponsive to nonoperative care. However, potential development of adjacent segment degeneration resulting in reoperation is a concern. Total disc replacement (TDR) has been proposed as a method for addressing back pain and preventing or reducing adjacent segment degeneration. The purpose of the study was to determine the reoperation rate at the segment adjacent to a level implanted with a lumbar TDR and to analyze the pre-...

  4. JOINTING PROCESS OF THE SAE 1020 WITH MAG WELD'S REGION HAVE BEEN INVESTIGATED AND FACTOR OF MISMATCH DETERMINED

    Directory of Open Access Journals (Sweden)

    Cevdet MERİÇ

    1997-03-01

    Full Text Available In this study, the jointing process of the SAE 1020 low carbon steel, generally used in the industry, has been done by the MAG weld method. The aim of this study is to examine the mismatch between base and weld metal. After the jointing process, mechanical and metalographical properties of the weld region, HAZ, and the weld metal of the samples considered here were searched, and CTOD (Crack Tip Opening Displacement was identified.

  5. Mismatch negativity, social cognition, and functional outcomes in patients after traumatic brain injury

    Directory of Open Access Journals (Sweden)

    Hui-yan Sun

    2015-01-01

    Full Text Available Mismatch negativity is generated automatically, and is an early monitoring indicator of neuronal integrity impairment and functional abnormality in patients with brain injury, leading to decline of cognitive function. Antipsychotic medication cannot affect mismatch negativity. The present study aimed to explore the relationships of mismatch negativity with neurocognition, daily life and social functional outcomes in patients after brain injury. Twelve patients with traumatic brain injury and 12 healthy controls were recruited in this study. We examined neurocognition with the Wechsler Adult Intelligence Scale-Revised China, and daily and social functional outcomes with the Activity of Daily Living Scale and Social Disability Screening Schedule, respectively. Mismatch negativity was analyzed from electroencephalogram recording. The results showed that mismatch negativity amplitudes decreased in patients with traumatic brain injury compared with healthy controls. Mismatch negativity amplitude was negatively correlated with measurements of neurocognition and positively correlated with functional outcomes in patients after traumatic brain injury. Further, the most significant positive correlations were found between mismatch negativity in the fronto-central region and measures of functional outcomes. The most significant positive correlations were also found between mismatch negativity at the FCz electrode and daily living function. Mismatch negativity amplitudes were extremely positively associated with Social Disability Screening Schedule scores at the Fz electrode in brain injury patients. These experimental findings suggest that mismatch negativity might efficiently reflect functional outcomes in patients after traumatic brain injury.

  6. Mismatch negativity, social cognition, and functional outcomes in patients after traumatic brain injury

    Institute of Scientific and Technical Information of China (English)

    Hui-yan Sun; Qiang Li; Xi-ping Chen; Lu-yang Tao

    2015-01-01

    Mismatch negativity is generated automatically, and is an early monitoring indicator of neuronal integrity impairment and functional abnormality in patients with brain injury, leading to decline of cognitive function. Antipsychotic medication cannot affect mismatch negativity. The present study aimed to explore the relationships of mismatch negativity with neurocognition, daily life and social functional outcomes in patients after brain injury. Twelve patients with traumatic brain injury and 12 healthy controls were recruited in this study. We examined neurocogni-tion with the Wechsler Adult Intelligence Scale-Revised China, and daily and social functional outcomes with the Activity of Daily Living Scale and Social Disability Screening Schedule, re-spectively. Mismatch negativity was analyzed from electroencephalogram recording. The results showed that mismatch negativity amplitudes decreased in patients with traumatic brain injury compared with healthy controls. Mismatch negativity amplitude was negatively correlated with measurements of neurocognition and positively correlated with functional outcomes in patients after traumatic brain injury. Further, the most signiifcant positive correlations were found be-tween mismatch negativity in the fronto-central region and measures of functional outcomes. The most signiifcant positive correlations were also found between mismatch negativity at the FCz electrode and daily living function. Mismatch negativity amplitudes were extremely positive-ly associated with Social Disability Screening Schedule scores at the Fz electrode in brain injury patients. These experimental ifndings suggest that mismatch negativity might efifciently relfect functional outcomes in patients after traumatic brain injury.

  7. PIV Measurements and Mechanisms of Adjacent Synthetic Jets Interactions

    Institute of Scientific and Technical Information of China (English)

    LUO Zhen-Bing; XIA Zhi-Xun

    2008-01-01

    Interactions of adjacent synthetic jet actuators with varying relative amplitude and the relative phase of driving voltage are measured using a particle image velocimetry(PIV).Varying relative amplitude or relative phase of driving voltage of the adjacent actuators vectors the direction of the ensuing merged jet of the adjacent synthetic jets.The vectoring mechanism of the adjacent vortex pairs,attract-impact causing deflection(AICD),is provided to explain why the merged jet is generally vectored to the side of the phase-leading synthetic jet or the synthetic jet with higher driving voltage.

  8. Approaches to diagnose DNA mismatch repair gene defects in cancer

    DEFF Research Database (Denmark)

    Peña-Diaz, Javier; Rasmussen, Lene Juel

    2016-01-01

    The DNA repair pathway mismatch repair (MMR) is responsible for the recognition and correction of DNA biosynthetic errors caused by inaccurate nucleotide incorporation during replication. Faulty MMR leads to failure to address the mispairs or insertion deletion loops (IDLs) left behind...... already been well defined and their pathogenicity assessed. Despite this substantial wealth of knowledge, the effects of a large number of alterations remain uncharacterized (variants of uncertain significance, VUSs). The advent of personalized genomics is likely to increase the list of VUSs found in MMR...

  9. Quasisynchronization in Quorum Sensing Systems with Parameter Mismatches

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    Jianbao Zhang

    2014-01-01

    Full Text Available The paper investigates quasisynchronization in a communication system, which consists of cells communicating through quorum sensing. With the help of Lyapunov function method and Lur’e system approach, some sufficient conditions for quasisynchronization are presented, and a bound on the synchronization errors is derived. The obtained theoretical results show that the synchronization quality is influenced by two parameters detrimentally: the error bound depends almost linearly on the mismatches between cells and depends sensitively on the diffusion rates of the signals inward the cell membrane. Numerical experiments are carried out to verify the theoretical results.

  10. Optimal control design that accounts for model mismatch errors

    Energy Technology Data Exchange (ETDEWEB)

    Kim, T.J. [Sandia National Labs., Albuquerque, NM (United States); Hull, D.G. [Texas Univ., Austin, TX (United States). Dept. of Aerospace Engineering and Engineering Mechanics

    1995-02-01

    A new technique is presented in this paper that reduces the complexity of state differential equations while accounting for modeling assumptions. The mismatch controls are defined as the differences between the model equations and the true state equations. The performance index of the optimal control problem is formulated with a set of tuning parameters that are user-selected to tune the control solution in order to achieve the best results. Computer simulations demonstrate that the tuned control law outperforms the untuned controller and produces results that are comparable to a numerically-determined, piecewise-linear optimal controller.

  11. Phoneme discrimination and mismatch negativity in English and Japanese speakers

    OpenAIRE

    Bomba, Marie D.; Choly, David; Elizabeth W Pang

    2011-01-01

    Neural templates for phonemes in one’s native language are formed early in life; these can be modified but are difficult to form de novo. These can be examined with mismatch negativity. Three phonemic contrasts were presented to adult native English compared to Japanese speakers who acquired English later: vowels native to both languages (/i//iy/); consonant-vowel contrasts (/da//wa/) phonemic in both languages; and consonant-vowel contrasts phonemic in English but not in Japanese (/ra//la/)....

  12. Expectation mismatch: differences between self-generated and cue-induced expectations.

    Science.gov (United States)

    Gaschler, R; Schwager, S; Umbach, V J; Frensch, P A; Schubert, T

    2014-10-01

    Expectation of upcoming stimuli and tasks can lead to improved performance, if the anticipated situation occurs, while expectation mismatch can lead to less efficient processing. Researchers have used methodological approaches that rely on either self-generated expectations (predictions) or cue-induced expectations to investigate expectation mismatch effects. Differentiating these two types of expectations for different contents of expectation such as stimuli, responses, task sets and conflict level, we review evidence suggesting that self-generated expectations lead to larger facilitating effects and conflict effects on the behavioral and neural level - as compared to cue-based expectations. On a methodological level, we suggest that self-generated as compared to cue-induced expectations allow for a higher amount of experimental control in many experimental designs on expectation effects. On a theoretical level, we argue for qualitative differences in how cues vs. self-generated expectations influence performance. While self-generated expectations might generally involve representing the expected event in the focus of attention in working memory, cues might only lead to such representations under supportive circumstances (i.e., cue of high validity and attended).

  13. Unconscious improvement in foreign language learning using mismatch negativity neurofeedback: A preliminary study.

    Science.gov (United States)

    Chang, Ming; Iizuka, Hiroyuki; Kashioka, Hideki; Naruse, Yasushi; Furukawa, Masahiro; Ando, Hideyuki; Maeda, Taro

    2017-01-01

    When people learn foreign languages, they find it difficult to perceive speech sounds that are nonexistent in their native language, and extensive training is consequently necessary. Our previous studies have shown that by using neurofeedback based on the mismatch negativity event-related brain potential, participants could unconsciously achieve learning in the auditory discrimination of pure tones that could not be consciously discriminated without the neurofeedback. Here, we examined whether mismatch negativity neurofeedback is effective for helping someone to perceive new speech sounds in foreign language learning. We developed a task for training native Japanese speakers to discriminate between 'l' and 'r' sounds in English, as they usually cannot discriminate between these two sounds. Without participants attending to auditory stimuli or being aware of the nature of the experiment, neurofeedback training helped them to achieve significant improvement in unconscious auditory discrimination and recognition of the target words 'light' and 'right'. There was also improvement in the recognition of other words containing 'l' and 'r' (e.g., 'blight' and 'bright'), even though these words had not been presented during training. This method could be used to facilitate foreign language learning and can be extended to other fields of auditory and clinical research and even other senses.

  14. Impact of DNA mismatch repair system alterations on human fertility and related treatments.

    Science.gov (United States)

    Hu, Min-hao; Liu, Shu-yuan; Wang, Ning; Wu, Yan; Jin, Fan

    2016-01-01

    DNA mismatch repair (MMR) is one of the biological pathways, which plays a critical role in DNA homeostasis, primarily by repairing base-pair mismatches and insertion/deletion loops that occur during DNA replication. MMR also takes part in other metabolic pathways and regulates cell cycle arrest. Defects in MMR are associated with genomic instability, predisposition to certain types of cancers and resistance to certain therapeutic drugs. Moreover, genetic and epigenetic alterations in the MMR system demonstrate a significant relationship with human fertility and related treatments, which helps us to understand the etiology and susceptibility of human infertility. Alterations in the MMR system may also influence the health of offspring conceived by assisted reproductive technology in humans. However, further studies are needed to explore the specific mechanisms by which the MMR system may affect human infertility. This review addresses the physiological mechanisms of the MMR system and associations between alterations of the MMR system and human fertility and related treatments, and potential effects on the next generation.

  15. An unexpected sequence of events: mismatch detection in the human hippocampus.

    Directory of Open Access Journals (Sweden)

    Dharshan Kumaran

    2006-11-01

    Full Text Available The ability to identify and react to novelty within the environment is fundamental to survival. Computational models emphasize the potential role of the hippocampus in novelty detection, its unique anatomical circuitry making it ideally suited to act as a comparator between past and present experience. The hippocampus, therefore, is viewed to detect associative mismatches between what is expected based on retrieval of past experience and current sensory input. However, direct evidence that the human hippocampus performs such operations is lacking. We explored brain responses to novel sequences of objects using functional magnetic resonance imaging (fMRI, while subjects performed an incidental target detection task. Our results demonstrate that hippocampal activation was maximal when prior predictions concerning which object would appear next in a sequence were violated by sensory reality. In so doing, we establish the biological reality of associative match-mismatch computations within the human hippocampus, a process widely held to play a cardinal role in novelty detection. Our results also suggest that the hippocampus may generate predictions about how future events will unfold, and critically detect when these expectancies are violated, even when task demands do not require it. The present study also offers broader insights into the nature of essential computations carried out by the hippocampus, which may also underpin its unique contribution to episodic memory.

  16. MEG Signatures of a Perceived Match or Mismatch between Individual and Group Opinions

    Science.gov (United States)

    Zubarev, Ivan; Klucharev, Vasily; Ossadtchi, Alexei; Moiseeva, Victoria; Shestakova, Anna

    2017-01-01

    Humans often adjust their opinions to the perceived opinions of others. Neural responses to a perceived match or mismatch between individual and group opinions have been investigated previously, but some findings are inconsistent. In this study, we used magnetoencephalographic source imaging to investigate further neural responses to the perceived opinions of others. We found that group opinions mismatching with individual opinions evoked responses in the anterior and posterior medial prefrontal cortices, as well as in the temporoparietal junction and ventromedial prefrontal cortex in the 220–320 and 380–530 ms time windows. Evoked responses were accompanied by an increase in the power of theta oscillations (4–8 Hz) over a number of frontal cortical sites. Group opinions matching with individual opinions evoked an increase in amplitude of beta oscillations (13–30 Hz) in the anterior cingulate and ventral medial prefrontal cortices. Based on these results, we argue that distinct valuation and performance-monitoring neural circuits in the medial cortices of the brain may monitor compliance of individual behavior to the perceived group norms. PMID:28167897

  17. Identification of the human chromosomal region containing the iridogoniodysgenesis anomaly locus by genomic-mismatch scanning.

    Science.gov (United States)

    Mirzayans, F; Mears, A J; Guo, S W; Pearce, W G; Walter, M A

    1997-01-01

    Genome-mismatch scanning (GMS) is a new method of linkage analysis that rapidly isolates regions of identity between two genomes. DNA molecules from regions of identity by descent from two relatives are isolated based on their ability to form extended mismatch-free heteroduplexes. We have applied this rapid technology to identify the chromosomal region shared by two fifth-degree cousins with autosomal dominant iridogoniodysgenesis anomaly (IGDA), a rare ocular neurocristopathy. Markers on the short arm of human chromosome 6p were recovered, consistent with the results of conventional linkage analysis conducted in parallel, indicating linkage of IGDA to 6p25. Control markers tested on a second human chromosome were not recovered. A GMS error rate of approximately 11% was observed, well within an acceptable range for a rapid, first screening approach, especially since GMS results would be confirmed by family analysis with selected markers from the putative region of identity by descent. These results demonstrate not only the value of this technique in the rapid mapping of human genetic traits, but the first application of GMS to a multicellular organism. Images Figure 2 PMID:9245991

  18. Shape forming by thermal expansion mismatch and shape memory locking in polymer/elastomer laminates

    Science.gov (United States)

    Yuan, Chao; Ding, Zhen; Wang, T. J.; Dunn, Martin L.; Qi, H. Jerry

    2017-10-01

    This paper studies a novel method to fabricate three-dimensional (3D) structure from 2D thermo-responsive shape memory polymer (SMP)/elastomer bilayer laminate. In this method, the shape change is actuated by the thermal mismatch strain between the SMP and the elastomer layers upon heating. However, the glass transition behavior of the SMP locks the material into a new 3D shape that is stable even upon cooling. Therefore, the second shape becomes a new permanent shape of the laminate. A theoretical model that accounts for the temperature-dependent thermomechanical behavior of the SMP material and thermal mismatch strain between the two layers is developed to better understand the underlying physics. Model predictions and experiments show good agreement and indicate that the theoretical model can well predict the bending behavior of the bilayer laminate. The model is then used in the optimal design of geometrical configuration and material selection. The latter also illustrates the requirement of thermomechanical behaviors of the SMP to lock the shape. Based on the fundamental understandings, several self-folding structures are demonstrated by the bilayer laminate design.

  19. Mismatched single stranded antisense oligonucleotides can induce efficient dystrophin splice switching

    Directory of Open Access Journals (Sweden)

    Kole Ryszard

    2011-10-01

    Full Text Available Abstract Background Antisense oligomer induced exon skipping aims to reduce the severity of Duchenne muscular dystrophy by redirecting splicing during pre-RNA processing such that the causative mutation is by-passed and a shorter but partially functional Becker muscular dystrophy-like dystrophin isoform is produced. Normal exons are generally targeted to restore the dystrophin reading frame however, an appreciable subset of dystrophin mutations are intra-exonic and therefore have the potential to compromise oligomer efficiency, necessitating personalised oligomer design for some patients. Although antisense oligomers are easily personalised, it remains unclear whether all patient polymorphisms within antisense oligomer target sequences will require the costly process of producing and validating patient specific compounds. Methods Here we report preclinical testing of a panel of splice switching antisense oligomers, designed to excise exon 25 from the dystrophin transcript, in normal and dystrophic patient cells. These patient cells harbour a single base insertion in exon 25 that lies within the target sequence of an oligomer shown to be effective at removing exon 25. Results It was anticipated that such a mutation would compromise oligomer binding and efficiency. However, we show that, despite the mismatch an oligomer, designed and optimised to excise exon 25 from the normal dystrophin mRNA, removes the mutated exon 25 more efficiently than the mutation-specific oligomer. Conclusion This raises the possibility that mismatched AOs could still be therapeutically applicable in some cases, negating the necessity to produce patient-specific compounds.

  20. T-T mismatch-driven biosensor using triple functional DNA-protein conjugates for facile detection of Hg2+.

    Science.gov (United States)

    Wang, Ruoyu; Zhou, Xiaohong; Shi, Hanchang; Luo, Yi

    2016-04-15

    We report herein a T-T mismatch-driven biosensor using triple functional DNA-protein conjugates for facile detection of mercury ions (Hg(2+)) based on evanescent wave fluorescence excitation. Fluorescein-labeled DNA strands and streptavidin molecules were conjugated using heterobifunctional crosslinkers, and the obtained conjugates were named as "Hg(2+) dependent conjugates, HDCs". Initially hybridized with quencher-labeled DNA (Q-DNA) strands, HDCs showed low evanescent wave-induced fluorescence emission signals; however, in the presence of Hg(2+), the DNA moieties of HDCs tended to form hairpin structures stabilized by T-T mismatches, releasing Q-DNA strands, which was accompanied by increases in the fluorescent signals. The novel detection strategy enables the fluorescent detection of mercury ions with high specificity and a low detection limit of 1.06 nM in a facile way.

  1. Toward a phenological mismatch in estuarine pelagic food web?

    Science.gov (United States)

    Chevillot, Xavier; Drouineau, Hilaire; Lambert, Patrick; Carassou, Laure; Sautour, Benoit; Lobry, Jérémy

    2017-01-01

    Alterations of species phenology in response to climate change are now unquestionable. Until now, most studies have reported precocious occurrence of life cycle events as a major phenological response. Desynchronizations of biotic interactions, in particular predator-prey relationships, are however assumed to strongly impact ecosystems’ functioning, as formalized by the Match-Mismatch Hypothesis (MMH). Temporal synchronicity between juvenile fish and zooplankton in estuaries is therefore of essential interest since estuaries are major nursery grounds for many commercial fish species. The Gironde estuary (SW France) has suffered significant alterations over the last three decades, including two Abrupt Ecosystem Shifts (AES), and three contrasted intershift periods. The main objective of this study was to depict modifications in fish and zooplankton phenology among inter-shift periods and discuss the potential effects of the resulting mismatches at a community scale. A flexible Bayesian method was used to estimate and compare yearly patterns of species abundance in the estuary among the three pre-defined periods. Results highlighted (1) an earlier peak of zooplankton production and entrance of fish species in the estuary and (2) a decrease in residence time of both groups in the estuary. Such species-specific phenological changes led to changes in temporal overlap between juvenile fish and their zooplanktonic prey. This situation questions the efficiency and potentially the viability of nursery function of the Gironde estuary, with potential implications for coastal marine fisheries of the Bay of Biscay. PMID:28355281

  2. Understanding the Mismatch Between Coaches' and Players' Perceptions of Exertion.

    Science.gov (United States)

    Brink, Michel S; Kersten, Anna W; Frencken, Wouter G P

    2017-04-01

    A mismatch between the training exertion intended by a coach and the exertion perceived by players is well established in sports. However, it is unknown whether coaches can accurately observe exertion of individual players during training. Furthermore, the discrepancy in coaches' and players' perceptions has not been explained. To determine the relation between intended and observed training exertion by the coach and perceived training exertion by the players and establish whether on-field training characteristics, intermittent endurance capacity, and maturity status explain the mismatch. During 2 mesocycles of 4 wk (in November and March), rating of intended exertion (RIE), rating of observed exertion (ROE), and rating of perceived exertion (RPE) were monitored in 31 elite young soccer players. External and internal training loads were objectively quantified with accelerometers (PlayerLoad) and heart-rate monitors (TRIMPmod). Results of an interval shuttle-run test (ISRT) and age at peak height velocity (APHV) were determined for all players. RIE, ROE, and RPE were monitored in 977 training sessions. The correlations between RIE and RPE (r = .58; P players will do and what they actually did on the field. When doing this, they consider the intermittent endurance capacity of individual players.

  3. Somatosensory mismatch response in young and elderly adults

    Directory of Open Access Journals (Sweden)

    Juho M. Strömmer

    2014-10-01

    Full Text Available Aging is associated with cognitive decline and alterations in early perceptual processes. Studies in the auditory and visual modalities have shown that the mismatch negativity (or the mismatch response, MMR, an event-related potential (ERP elicited by a deviant stimulus in a background of homogenous events, diminishes with aging and cognitive decline. However, the effects of aging on the somatosensory MMR are not known. In the current study, we recorded ERPs to electrical pulses to different fingers of the left hand in a passive oddball experiment in young (22–36 years and elderly (66–95 years adults engaged in a visual task. The MMR was found to deviants as compared to standards at two latency ranges: 180–220 ms and 250–290 ms post-stimulus onset. At 180–220 ms, within the young, the MMR was found at medial electrode sites, whereas aged did not show any amplitude difference between the stimulus types at the same latency range. At 250–290 ms, the MMR was evident with attenuated amplitude and narrowed scalp distribution among aged (Fz compared to young (fronto-centrally and lateral parietal sites. Hence, the results reveal that the somatosensory change detection mechanism is altered in aging. The somatosensory MMR can be used as a reliable measure of age-related changes in sensory-cognitive functions.

  4. Donor-Recipient Size Mismatch in Paediatric Renal Transplantation

    Directory of Open Access Journals (Sweden)

    J. Donati-Bourne

    2014-01-01

    Full Text Available Introduction. End stage renal failure in children is a rare but devastating condition, and kidney transplantation remains the only permanent treatment option. The aim of this review was to elucidate the broad surgical issues surrounding the mismatch in size of adult kidney donors to their paediatric recipients. Methods. A comprehensive literature search was undertaken on PubMed, MEDLINE, and Google Scholar for all relevant scientific articles published to date in English language. Manual search of the bibliographies was also performed to supplement the original search. Results. Size-matching kidneys for transplantation into children is not feasible due to limited organ availability from paediatric donors, resulting in prolonged waiting list times. Transplanting a comparatively large adult kidney into a child may lead to potential challenges related to the surgical incision and approach, vessel anastomoses, wound closure, postoperative cardiovascular stability, and age-correlated maturation of the graft. Conclusion. The transplantation of an adult kidney into a size mismatched paediatric recipient significantly reduces waiting times for surgery; however, it presents further challenges in terms of both the surgical procedure and the post-operative management of the patient’s physiological parameters.

  5. Reduced Sensitivity of Older Adults to Affective Mismatches

    Directory of Open Access Journals (Sweden)

    Yang Jiang

    2007-01-01

    Full Text Available The present study investigated age-related differences in emotional processing by using a paradigm of affective priming. Eighteen, right-handed, younger (mean age 22 and 15 older (mean age 68 subjects pressed buttons to indicate pleasantness of target words. The valence of each prime-target pair was congruent (e.g., win-love, incongruent (e.g., love-loss, or neutral (time-flower. Two sets of 720 prime-target pairs used either affective words or pictures as primes, and affect words as targets. We included well-matched positive and negative valence pairs in all congruent, neutral, and incongruent conditions, and controlled for possible contamination by semantic meaning, word frequency, and repetition effects. The response time (RT results revealed that young participants responded faster to the targets in affectively congruent conditions than in incongruent conditions. In older participants, the responses to target words were indifferent to all valence congruency conditions. The age effect in affective priming largely reflects reduced sensitivity to affective mismatches among older adults. Intriguingly, emotional Stroop effect and some perceptual priming have been linked to increased interferences and mismatches in older adults. The age-related changes in affective, perceptual, and semantic processes are discussed.

  6. Comparison of magnetic resonance imaging mismatch criteria to select patients for endovascular stroke therapy.

    Science.gov (United States)

    Mishra, Nishant K; Albers, Gregory W; Christensen, Søren; Marks, Michael; Hamilton, Scott; Straka, Matus; Liggins, John T P; Kemp, Stephanie; Mlynash, Michael; Bammer, Roland; Lansberg, Maarten G

    2014-05-01

    The Diffusion and Perfusion Imaging Evaluation for Understanding Stroke Evolution 2 (DEFUSE 2) study has shown that clinical response to endovascular reperfusion differs between patients with and without perfusion-diffusion (perfusion-weighted imaging-diffusion-weighted imaging, PWI-DWI) mismatch: patients with mismatch have a favorable clinical response to reperfusion, whereas patients without mismatch do not. This study examined whether alternative mismatch criteria can also differentiate patients according to their response to reperfusion. Patients from the DEFUSE 2 study were categorized according to vessel occlusion on magnetic resonance angiography (MRA) and DWI lesion volume criteria (MRA-DWI mismatch) and symptom severity and DWI criteria (clinical-DWI mismatch). Favorable clinical response was defined as an improvement of ≥8 points on the National Institutes of Health Stroke Scale (NIHSS) by day 30 or an NIHSS score of ≤1 at day 30. We assessed, for each set of criteria, whether the association between reperfusion and favorable clinical response differed according to mismatch status. A differential response to reperfusion was observed between patients with and without MRA-DWI mismatch defined as an internal carotid artery or M1 occlusion and a DWI lesionfunctional outcome in patients who met these MRA-DWI mismatch criteria (odds ratio [OR], 8.5; 95% confidence interval [CI], 2.3-31.3), whereas no association was observed in patients who did not meet these criteria (OR, 0.5; 95% CI, 0.08-3.1; P for difference between the odds, 0.01). No differential response to reperfusion was observed with other variations of the MRA-DWI or clinical-DWI mismatch criteria. The MRA-DWI mismatch is a promising alternative to DEFUSE 2's PWI-DWI mismatch for patient selection in endovascular stroke trials.

  7. Mismatch repair status may predict response to adjuvant chemotherapy in resectable pancreatic ductal adenocarcinoma.

    Science.gov (United States)

    Riazy, Maziar; Kalloger, Steve E; Sheffield, Brandon S; Peixoto, Renata D; Li-Chang, Hector H; Scudamore, Charles H; Renouf, Daniel J; Schaeffer, David F

    2015-10-01

    Deficiencies in DNA mismatch repair have been associated with inferior response to 5-FU in colorectal cancer. Pancreatic ductal adenocarcinoma is similarly treated with pyrimidine analogs, yet the predictive value of mismatch repair status for response to these agents has not been examined in this malignancy. A tissue microarray with associated clinical outcome, comprising 254 resected pancreatic ductal adenocarcinoma patients was stained for four mismatch repair proteins (MLH1, MSH2, MSH6 and PMS2). Mismatch repair deficiency and proficiency was determined by the absence or presence of uniform nuclear staining in tumor cells, respectively. Cases identified as mismatch repair deficient on the tissue microarray were confirmed by immunohistochemistry on whole slide sections. Of the 265 cases, 78 (29%) received adjuvant treatment with a pyrimidine analog and 41 (15%) showed a mismatch repair-deficient immunoprofile. Multivariable disease-specific survival in the mismatch repair-proficient cohort demonstrated that adjuvant chemotherapy, regional lymph-node status, gender, and the presence of tumor budding were significant independent prognostic variables (P≤0.04); however, none of the eight clinico-pathologic covariates examined in the mismatch repair-deficient cohort were of independent prognostic significance. Univariable assessment of disease-specific survival revealed an almost identical survival profile for both treated and untreated patients with a mismatch repair-deficient profile, while treatment in the mismatch repair-proficient cohort conferred a greater than 10-month median disease-specific survival advantage over their untreated counterparts (P=0.0018). In this cohort, adjuvant chemotherapy with a pyrimidine analog conferred no survival advantage to mismatch repair-deficient pancreatic ductal adenocarcinoma patients. Mismatch repair immunoprofiling is a feasible predictive marker in pancreatic ductal adenocarcinoma patients, and further prospective

  8. Study on Optimization of Phase Offset at Adjacent Intersections

    Directory of Open Access Journals (Sweden)

    Yuanli GU

    2010-11-01

    Full Text Available Optimization of the phase offset at adjacent intersections is the key parameter regarding coordinated control of traffic signal for adjacent intersections, which decides the effect of the coordinated control for adjacent intersections. According to characters of saturated traffic flow of Chinese urban road, this thesis establishes a model for optimization of phase offset for adjacent interactions and finds a solution from such model by adopting genetic algorithm. The model is verified by actual traffic flow datum of two adjacent signal intersections on Changan Avenue. Then a comparison is made between the optimization result of such model and that of the existing mathematical method and SYNCHRO model, which indicates that the model established by this thesis can reduce the delay suffered by vehicles at the intersections and increase the traffic efficiency of the intersections.

  9. Decentralized Adaptive Control of Systems with Uncertain Interconnections, Plant-Model Mismatch and Actuator Failures

    Science.gov (United States)

    Patre, Parag; Joshi, Suresh M.

    2011-01-01

    Decentralized adaptive control is considered for systems consisting of multiple interconnected subsystems. It is assumed that each subsystem s parameters are uncertain and the interconnection parameters are not known. In addition, mismatch can exist between each subsystem and its reference model. A strictly decentralized adaptive control scheme is developed, wherein each subsystem has access only to its own state but has the knowledge of all reference model states. The mismatch is estimated online for each subsystem and the mismatch estimates are used to adaptively modify the corresponding reference models. The adaptive control scheme is extended to the case with actuator failures in addition to mismatch.

  10. Monte Carlo simulation of epitaxial growth on a (111) layer with mismatch

    Science.gov (United States)

    Tan, S.; Ghazali, A.; Lévy, J.-C. S.

    1997-04-01

    A high-temperature deposition of adatoms on a substrate with or without lattice mismatch from -10% to +10%, followed by slow cooling to a given temperature, is simulated by means of a Monte Carlo algorithm with Lennard-Jones interatomic pair potentials. Stranski-Krastanov growth is always observed with a lateral island size controlled by the lattice mismatch, while the deposition mode acts strongly on the island slope. Complete healing of the island structure never occurs before the tenth layer. The interlayer distance undergoes oscillations as a function of the layer number. This is observed for a ±10% mismatch as well as for a -5% mismatch.

  11. Mode-mismatched confocal thermal-lens microscope with collimated probe beam

    Energy Technology Data Exchange (ETDEWEB)

    Cabrera, Humberto, E-mail: hcabrera@ictp.it [SPIE-ICTP Anchor Research Laboratory, International Centre for Theoretical Physics (ICTP), Strada Costiera 11, Trieste (Italy); Centro Multidisciplinartio de Ciencias, Instituto Venezolano de Investigaciones Científicas (IVIC), Mérida 5101 (Venezuela, Bolivarian Republic of); Korte, Dorota; Franko, Mladen [Laboratory for Environmental Research, University of Nova Gorica, Vipavska 13, 5000 Nova Gorica (Slovenia)

    2015-05-15

    We report a thermal lens microscope (TLM) based on an optimized mode-mismatched configuration. It takes advantage of the coaxial counter propagating tightly focused excitation and collimated probe beams, instead of both focused at the sample, as it is in currently known TLM setups. A simple mathematical model that takes into account the main features of the instrument is presented. The confocal detection scheme and the introduction of highly collimated probe beam allow enhancing the versatility, limit of detection (LOD), and sensitivity of the instrument. The theory is experimentally verified measuring ethanol’s absorption coefficient at 532.8 nm. Additionally, the presented technique is applied for detection of ultra-trace amounts of Cr(III) in liquid solution. The achieved LOD is 1.3 ppb, which represents 20-fold enhancement compared to transmission mode spectrometric techniques and a 7.5-fold improvement compared to previously reported methods for Cr(III) based on thermal lens effect.

  12. Twisting right to left: A…A mismatch in a CAG trinucleotide repeat overexpansion provokes left-handed Z-DNA conformation.

    Science.gov (United States)

    Khan, Noorain; Kolimi, Narendar; Rathinavelan, Thenmalarchelvi

    2015-04-01

    Conformational polymorphism of DNA is a major causative factor behind several incurable trinucleotide repeat expansion disorders that arise from overexpansion of trinucleotide repeats located in coding/non-coding regions of specific genes. Hairpin DNA structures that are formed due to overexpansion of CAG repeat lead to Huntington's disorder and spinocerebellar ataxias. Nonetheless, DNA hairpin stem structure that generally embraces B-form with canonical base pairs is poorly understood in the context of periodic noncanonical A…A mismatch as found in CAG repeat overexpansion. Molecular dynamics simulations on DNA hairpin stems containing A…A mismatches in a CAG repeat overexpansion show that A…A dictates local Z-form irrespective of starting glycosyl conformation, in sharp contrast to canonical DNA duplex. Transition from B-to-Z is due to the mechanistic effect that originates from its pronounced nonisostericity with flanking canonical base pairs facilitated by base extrusion, backbone and/or base flipping. Based on these structural insights we envisage that such an unusual DNA structure of the CAG hairpin stem may have a role in disease pathogenesis. As this is the first study that delineates the influence of a single A…A mismatch in reversing DNA helicity, it would further have an impact on understanding DNA mismatch repair.

  13. Twisting right to left: A…A mismatch in a CAG trinucleotide repeat overexpansion provokes left-handed Z-DNA conformation.

    Directory of Open Access Journals (Sweden)

    Noorain Khan

    2015-04-01

    Full Text Available Conformational polymorphism of DNA is a major causative factor behind several incurable trinucleotide repeat expansion disorders that arise from overexpansion of trinucleotide repeats located in coding/non-coding regions of specific genes. Hairpin DNA structures that are formed due to overexpansion of CAG repeat lead to Huntington's disorder and spinocerebellar ataxias. Nonetheless, DNA hairpin stem structure that generally embraces B-form with canonical base pairs is poorly understood in the context of periodic noncanonical A…A mismatch as found in CAG repeat overexpansion. Molecular dynamics simulations on DNA hairpin stems containing A…A mismatches in a CAG repeat overexpansion show that A…A dictates local Z-form irrespective of starting glycosyl conformation, in sharp contrast to canonical DNA duplex. Transition from B-to-Z is due to the mechanistic effect that originates from its pronounced nonisostericity with flanking canonical base pairs facilitated by base extrusion, backbone and/or base flipping. Based on these structural insights we envisage that such an unusual DNA structure of the CAG hairpin stem may have a role in disease pathogenesis. As this is the first study that delineates the influence of a single A…A mismatch in reversing DNA helicity, it would further have an impact on understanding DNA mismatch repair.

  14. 基于TOF三维相机相邻散乱点云配准技术研究%Adjacent Scatter Point Cloud Registration Technology Research Based on Three-dimensional Camera of Time of Flight

    Institute of Scientific and Technical Information of China (English)

    张旭东; 吴国松; 胡良梅; 王竹萌

    2013-01-01

    Against the problem of low accuracy,slow speed of point cloud registration in 3D point cloud modeling on the surface of the object based on the principle of time of flight(TOF) camera,a fast,easy method is proposed to realize the scattered points clouds registration,this method realize the point cloud initial position registration through extracting feature point from distance image of target objects,obtaining the initial transform parameter using an iterative solving process.Based on this,using gradient value of intensity image of TOF camera and K-nearest neighbor algorithm based on the local decomposition of 3D space to find the closest point between point cloud as the matching point pair.According to the iterative process of primitive iterative closest point(ICP) algorithm to iterate the matching point pair and obtain the best transform parameter in point cloud,at the same time,improving the precision of iterative point clouds registration combined with the error matching point removing rule,to realize the point cloud precise location registration.To verify the algorithm combined with the actual space objects,the experimental results show that this point cloud registration improved speed and the precision of registration compared with the traditional registration method,this will help to improve the precision of object surface reconstruction,have a high practical value.%针对基于飞行时间(Time-of-flight,TOF)原理的三维测距相机对物体完整表面进行三维点云建模中点云配准速度慢、精度低的问题,提出一种快速、易实现的散乱点云配准方法,该方法通过提取目标物体距离图像的特征点,采用非迭代的求解过程获取初始变换参数,实现点云初始位置配准.在此基础上,利用TOF相机强度图像的梯度值与基于局部3D空间分解的Knn算法寻找点云之间最邻近点作为匹配点对,根据原始迭代最近点算法的迭代过程对这些匹配点对进行迭代求解,获

  15. Loading effects of anterior cervical spine fusion on adjacent segments

    Directory of Open Access Journals (Sweden)

    Chien-Shiung Wang

    2012-11-01

    Full Text Available Adjacent segment degeneration typically follows anterior cervical spine fusion. However, the primary cause of adjacent segment degeneration remains unknown. Therefore, in order to identify the loading effects that cause adjacent segment degeneration, this study examined the loading effects to superior segments adjacent to fused bone following anterior cervical spine fusion. The C3–C6 cervical spine segments of 12 sheep were examined. Specimens were divided into the following groups: intact spine (group 1; and C5–C6 segments that were fused via cage-instrumented plate fixation (group 2. Specimens were cycled between 20° flexion and 15° extension with a displacement control of 1°/second. The tested parameters included the range of motion (ROM of each segment, torque and strain on both the body and inferior articular process at the superior segments (C3–C4 adjacent to the fused bone, and the position of the neutral axis of stress at under 20° flexion and 15° extension. Under flexion and Group 2, torque, ROM, and strain on both the bodies and facets of superior segments adjacent to the fused bone were higher than those of Group 1. Under extension and Group 2, ROM for the fused segment was less than that of Group 1; torque, ROM, and stress on both the bodies and facets of superior segments adjacent to the fused bone were higher than those of Group 1. These analytical results indicate that the muscles and ligaments require greater force to achieve cervical motion than the intact spine following anterior cervical spine fusion. In addition, ROM and stress on the bodies and facets of the joint segments adjacent to the fused bone were significantly increased. Under flexion, the neutral axis of the stress on the adjacent segment moved backward, and the stress on the bodies of the segments adjacent to the fused bone increased. These comparative results indicate that increased stress on the adjacent segments is caused by stress-shielding effects

  16. Enhanced thermal stability and mismatch discrimination of mutation-carrying DNA duplexes and their kinetic and thermodynamic properties in microchannel laminar flow.

    Science.gov (United States)

    Nagata, Maria Portia B; Yamashita, Kenichi; Miyazaki, Masaya; Nakamura, Hiroyuki; Maeda, Hideaki

    2009-07-01

    This article reports the enhancement of thermal stability involving normal duplex and mutation-carrying DNA duplexes in microchannel laminar flow. The application of an in-house temperature-controllable microchannel-type flow cell is demonstrated for improved discrimination of mismatch base pairs such as A-G and T-G that are difficult to distinguish due to the rather small thermal destabilizations. Enhancement in thermal stability is reflected by an increased thermal melting temperature achieved in microchannel laminar flow as compared with batch reactions. To examine the kinetics and thermodynamics of duplex-coil equilibrium of DNA oligomers, denaturation-renaturation hysteresis curves were measured. The influence of microchannel laminar flow on DNA base mismatch analysis was described from the kinetic and thermodynamic perspectives. An increasing trend was observed for association rate constant as flow rate increased. In contrast, an apparent decrease in dissociation rate constant was observed with increasing flow rate. The magnitudes of the activation energies of dissociation were nearly constant for both the batch and microchannel laminar flow systems at all flow rates. In contrast, the magnitudes of activation energies of association decreased as flow rate increased. These results clearly show how microchannel laminar flow induces change in reaction rate by effecting change in activation energy. We anticipate, therefore, that this approach based on microchannel laminar flow system holds great promise for improved mismatch discrimination in DNA analyses, particularly on single-base-pair mismatch, by pronouncedly enhancing thermal stability.

  17. Uplink scheduling and adjacent-channel coupling loss analysis for TD-LTE deployment.

    Science.gov (United States)

    Yeo, Woon-Young; Moon, Sung Ho; Kim, Jae-Hoon

    2014-01-01

    TD-LTE, one of the two duplexing modes in LTE, operates in unpaired spectrum and has the advantages of TDD-based technologies. It is expected that TD-LTE will be more rapidly deployed in near future and most of WiMax operators will upgrade their networks to TD-LTE gradually. Before completely upgrading to TD-LTE, WiMax may coexist with TD-LTE in an adjacent frequency band. In addition, multiple TD-LTE operators may deploy their networks in adjacent bands. When more than one TDD network operates in adjacent frequency bands, severe interference may happen due to adjacent channel interference (ACI) and unsynchronized operations. In this paper, coexistence issues between TD-LTE and other systems are analyzed and coexistence requirements are provided. This paper has three research objectives. First, frame synchronization between TD-LTE and WiMax is discussed by investigating possible combinations of TD-LTE and WiMax configurations. Second, an uplink scheduling algorithm is proposed to utilize a leakage pattern of ACI in synchronized operations. Third, minimum requirements for coexistence in unsynchronized operations are analyzed by introducing a concept of adjacent-channel coupling loss. From the analysis and simulation results, we can see that coexistence of TD-LTE with other TDD systems is feasible if the two networks are synchronized. For the unsynchronized case, some special cell-site engineering techniques may be required to reduce the ACI.

  18. Identification of protein-RNA interaction sites using the information of spatial adjacent residues

    Directory of Open Access Journals (Sweden)

    Cheng Yong-Mei

    2011-10-01

    Full Text Available Abstract Background Protein-RNA interactions play an important role in numbers of fundamental cellular processes such as RNA splicing, transport and translation, protein synthesis and certain RNA-mediated enzymatic processes. The more knowledge of Protein-RNA recognition can not only help to understand the regulatory mechanism, the site-directed mutagenesis and regulation of RNA–protein complexes in biological systems, but also have a vitally effecting for rational drug design. Results Based on the information of spatial adjacent residues, novel feature extraction methods were proposed to predict protein-RNA interaction sites with SVM-KNN classifier. The total accuracies of spatial adjacent residue profile feature and spatial adjacent residues weighted accessibility solvent area feature are 78%, 67.07% respectively in 5-fold cross-validation test, which are 1.4%, 3.79% higher than that of sequence neighbour residue profile feature and sequence neighbour residue accessibility solvent area feature. Conclusions The results indicate that the performance of feature extraction method using the spatial adjacent information is superior to the sequence neighbour information approach. The performance of SVM-KNN classifier is little better than that of SVM. The feature extraction method of spatial adjacent information with SVM-KNN is very effective for identifying protein-RNA interaction sites and may at least play a complimentary role to the existing methods.

  19. Uplink Scheduling and Adjacent-Channel Coupling Loss Analysis for TD-LTE Deployment

    Directory of Open Access Journals (Sweden)

    Woon-Young Yeo

    2014-01-01

    Full Text Available TD-LTE, one of the two duplexing modes in LTE, operates in unpaired spectrum and has the advantages of TDD-based technologies. It is expected that TD-LTE will be more rapidly deployed in near future and most of WiMax operators will upgrade their networks to TD-LTE gradually. Before completely upgrading to TD-LTE, WiMax may coexist with TD-LTE in an adjacent frequency band. In addition, multiple TD-LTE operators may deploy their networks in adjacent bands. When more than one TDD network operates in adjacent frequency bands, severe interference may happen due to adjacent channel interference (ACI and unsynchronized operations. In this paper, coexistence issues between TD-LTE and other systems are analyzed and coexistence requirements are provided. This paper has three research objectives. First, frame synchronization between TD-LTE and WiMax is discussed by investigating possible combinations of TD-LTE and WiMax configurations. Second, an uplink scheduling algorithm is proposed to utilize a leakage pattern of ACI in synchronized operations. Third, minimum requirements for coexistence in unsynchronized operations are analyzed by introducing a concept of adjacent-channel coupling loss. From the analysis and simulation results, we can see that coexistence of TD-LTE with other TDD systems is feasible if the two networks are synchronized. For the unsynchronized case, some special cell-site engineering techniques may be required to reduce the ACI.

  20. Gas explosion in a room with a window and passage to an adjacent room

    Directory of Open Access Journals (Sweden)

    Polandov Yuri

    2016-01-01

    Full Text Available Some publications describe an effect, produced during a physical model experiment, when an adjacent gas-free room influences the gas explosion pressure in a room with a window. The explosion pressure in this case significantly exceeds (2.5 times the explosion pressure in a room without an adjacent room. This result has been confirmed by our studies. Based on other available information about the influence of the ignition point location on the explosion pressure in one room, it was suggested that this could be true for an explosion in two rooms. In our studies we used a test unit with two connected chambers, each having a volume of 1.125 m3. It turned out that this influence of the adjacent volume was not so unambiguous as it was described in those publications. It was found out that the maximum effect of explosion pressure amplification by the adjacent room is achieved, when the igniter is located in the chamber filled with a gas-air mixture in the area between the center of the chamber and the window (maximum amplification by more than 3 times. This effect is lower directly by the window (1.8 times and is practically absent in case of ignition within the area near the passage connecting the chamber with the adjacent room. This suggests that the effect discovered earlier is a special case of the general dependence of the gas explosion pressure in two chambers on the igniter location.

  1. Performing arts attendance and geographic adjacency

    NARCIS (Netherlands)

    C.B.G. Langeveld (Cees); M. Van Stiphout

    2013-01-01

    markdownabstract__Abstract__ Much research has been conducted on the willingness of audiences to travel to access the performing arts. Most studies are based on surveys filled in by arts consumers. The general findings indicate an average distance that audiences are willing to travel for performanc

  2. Computation and analysis of the geomagnetic field model in China and its adjacent area for 2003

    Institute of Scientific and Technical Information of China (English)

    GU Zuo-wen; AN Zhen-chang; GAO Jin-tian; ZHAN Zhi-jia; YAO Tong-qi; HAN Wei; CHEN Bin

    2006-01-01

    Based on the geomagnetic data at 135 stations and 35 observatories in China in 2003, the Taylor polynomial model and the spherical cap harmonic model in China and its adjacent area for 2003 were established. In the model calculation, the truncation order of the model and the influences of the boundary restriction on the model calculation were carefully analyzed. The results show that the geomagnetic data used are precise and reliable, and the selection of the truncation order is reasonable. The Taylor polynomial model and the spherical cap harmonic model in China and its adjacent area established in this paper are consistent very well.

  3. The mismatch between the cultures of journalism and science

    Energy Technology Data Exchange (ETDEWEB)

    Gelbspan, R.

    2000-06-01

    This presentation provided some insight into the journalist's perspective on climate change with particular consideration to the way the U.S. media portrays the issue. The author draws on thirty years of experience in journalism when he portrays the economic and political aspects of climate change along with the critical issues of journalism ethics as they relate to the coverage of the climate crisis. This paper also highlighted the campaign of deception by the fossil fuel lobby in the United States. The objective of this presentation is to address the link between inadequate media coverage and the lack of a political constituency in the United States regarding this issue. It was emphasized that there is a communication mismatch between science and journalism. Some suggestions were presented which would help scientists communicate their ideas to the press more effectively.

  4. Automated effective band structures for defective and mismatched supercells

    Science.gov (United States)

    Brommer, Peter; Quigley, David

    2014-12-01

    In plane-wave density functional theory codes, defects and incommensurate structures are usually represented in supercells. However, interpretation of E versus k band structures is most effective within the primitive cell, where comparison to ideal structures and spectroscopy experiments are most natural. Popescu and Zunger recently described a method to derive effective band structures (EBS) from supercell calculations in the context of random alloys. In this paper, we present bs_sc2pc, an implementation of this method in the CASTEP code, which generates an EBS using the structural data of the supercell and the underlying primitive cell with symmetry considerations handled automatically. We demonstrate the functionality of our implementation in three test cases illustrating the efficacy of this scheme for capturing the effect of vacancies, substitutions and lattice mismatch on effective primitive cell band structures.

  5. Role of mismatch in mechanical properties in cancer cell migration

    Science.gov (United States)

    Butcher, Julian; Das, Moumita

    2014-03-01

    Recent experiments suggest that the mechanical stiffness of cells and their interaction with their surroundings undergo remarkable changes during tumor progression. An intriguing experimental result in this area suggests that the mismatch in the elasticity and adhesive properties between cancer cells and cells that have not yet transformed may lead to enhanced cancer cell motility in a binary cell population. Motivated by this, we study the mechanical response and dynamics of a binary system of active and deformable particles using Langevin Dynamics simulations. We characterize their motility by studying particle trajectories, mean square displacements and correlation functions. Our study may provide an understanding of the interplay of mechanical and statistical mechanical properties underlying the enhanced motility of cancer cells during metastasis. This work was partially supported by a D-RIG grant from the College of Science at Rochester Institute of Technology.

  6. Mismatch negativity during attend and ignore conditions in Alzheimer's disease.

    Science.gov (United States)

    Kazmerski, V A; Friedman, D; Ritter, W

    1997-09-01

    Mismatch negativities (MMNs) of the event-related potential to deviant tones and environmental sounds were recorded during active and ignore oddball sequences in young and elderly controls and patients with probable Alzheimer's disease (PAD). MMNs were smaller in the PAD waveforms compared to those of the controls, suggesting a degraded sensory memory trace in these subjects; however, under ignore conditions, environmental sounds elicited robust MMNs in the PAD group along with N2b and novelty P3 components in similar fashion to controls. As N2b and P3 are usually elicited by attended stimuli, these data suggest that in the PAD subjects, the highly deviant events involuntarily captured attention, perhaps reflecting the activation of an attentional switching mechanism. Because this passive switching is thought to reflect activation of a mechanism located in the frontal lobes, the data suggest that this putative frontal lobe mechanism is relatively intact in the early stages of the disease.

  7. Three perspectives on the mismatch between measures of material poverty.

    Science.gov (United States)

    Hick, Rod

    2015-03-01

    The two most prominent measures of material poverty within contemporary European poverty analysis are low income and material deprivation. However, it is by now well-known that these measures identify substantially different people as being poor. In this research note, I seek to demonstrate that there are at least three ways to understand the mismatch between low income and material deprivation, relating to three different forms of identification: identifying poor households, identifying groups at risk of poverty and identifying trends in material poverty over time. Drawing on data from the British Household Panel Survey, I show that while low income and material deprivation identify very different households as being poor, and display distinct trends over time, in many cases they identify the same groups at being at risk of material poverty.

  8. Concentrative meditation enhances preattentive processing: a mismatch negativity study.

    Science.gov (United States)

    Srinivasan, Narayanan; Baijal, Shruti

    2007-10-29

    The mismatch negativity (MMN) paradigm that is an indicator of preattentive processing was used to study the effects of concentrative meditation. Sudarshan Kriya Yoga meditation is a yogic exercise practiced in an ordered sequence beginning with breathing exercises, and ending with concentrative (Sahaj Samadhi) meditation. Auditory MMN waveforms were recorded at the beginning and after each of these practices for meditators, and equivalently after relaxation sessions for the nonmeditators. Overall meditators were found to have larger MMN amplitudes than nonmeditators. The meditators also exhibited significantly increased MMN amplitudes immediately after meditation suggesting transient state changes owing to meditation. The results indicate that concentrative meditation practice enhances preattentive perceptual processes, enabling better change detection in auditory sensory memory.

  9. ADAPTIVE CALIBRATION OF I AND Q MISMATCH IN QUADRATURE RECEIVER

    Institute of Scientific and Technical Information of China (English)

    Yang Xuexian; Hou Zifeng; Zhang Qunying; Ning Yanqing

    2002-01-01

    The mismatch of in-phase and quadrature channels in quadrature receiver affects and constrains radar detection performance in coherent radar. It is necessary to keep the in-phase and quadrature branches symmetrical. In this letter, an adaptive method to detect imbalance parameters is derived by means of evaluating channel errors from the received signal sequences.No matter how the bias degree of the gain and phase errors in I/Q channels are, the proposed adaptive scheme can obtain good calibration results. And the required calculations are only a few multiplications and additions. No need of a special test signal, the introduced method is simple to implement and easy to operate.

  10. Mismatch of Cultural Dimensions in an Urban Medical Educational Environment

    Directory of Open Access Journals (Sweden)

    Bethany Malone

    2013-01-01

    Full Text Available Objective. To identify cultural dimensions and their potential mismatches between attending physicians and their residents and medical students. Methods. We surveyed faculty and students, both undergraduates and postgraduate resident physicians, at the SUNY Downstate College of Medicine, using Hofstede’s VSM-08 questionnaire, and calculated cultural dimensions, including the Power-Distance Index (PDI, Individualism (IDV, Masculinity (MAS, Uncertainty Avoidance Index (UAI, and Long-term Outlook (LTO. Correlations between faculty and student demographic data and cultural dimensions were calculated (SPSS. Results. There were 237 student and resident respondents and 96 faculty respondents. Comparing all faculty and student respondents, significant differences were found in four of five cultural dimensions, with faculty scoring higher in MAS, and lower in PDI, IDV, UAI, and LTO. Conclusions. These differences may be important in the design and implementation of a medical educational curriculum, and, particularly, in the measurement and evaluation of educational outcomes.

  11. Fast damping in mismatched high intensity beam transportation

    Directory of Open Access Journals (Sweden)

    V. Variale

    2001-08-01

    Full Text Available A very fast damping of beam envelope oscillation amplitudes was recently observed in simulations of high intensity beam transport, through periodic FODO cells, in mismatched conditions [V. Variale, Nuovo Cimento Soc. Ital. Fis. 112A, 1571–1582 (1999 and T. Clauser et al., in Proceedings of the Particle Accelerator Conference, New York, 1999 (IEEE, Piscataway, NJ, 1999, p. 1779]. A Landau damping mechanism was proposed at the origin of observed effect. In this paper, to further investigate the source of this fast damping, extensive simulations have been carried out. The results presented here support the interpretation of the mechanism at the origin of the fast damping as a Landau damping effect.

  12. Performance of mismatched Viterbi receiver on satellite channels

    Science.gov (United States)

    Divsalar, D.; Omura, J. K.

    1979-01-01

    This paper presents an analysis of a satellite communication system using a Viterbi receiver. Here we have a bandlimited nonlinear channel where both uplink and downlink are taken into account as well as the effect of Intersymbol Interference, phase and time synchronization errors. In order that ISI can be combatted effectively, we use a Viterbi demodulator which is designed for the satellite channel when there is no uplink noise. The Viterbi demodulator for the channels with large memory is too complex to be implemented. To reduce the complexity, a Viterbi demodulator with memory shorter than the true channel memory is used. The objective of this paper is to analyze the performance degradation of this 'Mismatched Viterbi Receiver' due to the uplink noise and memory truncation, and to understand how the time and phase synchronization errors influence the performance.

  13. An Index-Mismatch Scattering Approach to Optical Limiting

    Energy Technology Data Exchange (ETDEWEB)

    Exarhos, Gregory J.; Ferris, Kim F.; Windisch, Charles F.; Bozlee, Brian J.; Risser, Steven M.; Van Swam, Simone L.

    2001-08-01

    A densely packed bed of alkaline earth fluoride particles percolated by a fluid medium has been investigated as a potential index-matched optical limiter in the spirit of a Christiansen-Shelyubskii filter. Marked optical limiting was observed through this transparent medium under conditions where the focused second-harmonic output of a Q-swtiched Nd: YAG laser was on the order of about 1 J/cm2. An open-aperture Z-scan technique was used to quantify the limiting behavior. In this case, the mechanism of optical limiting is thought to be a nonlinear shift in the fluid index of refraction, resulting in an index mismatch between the disparate phases at high laser fluence.

  14. Efficient and reproducible identification of mismatch repair deficient colon cancer

    DEFF Research Database (Denmark)

    Joost, Patrick; Bendahl, Pär-Ola; Halvarsson, Britta;

    2013-01-01

    BACKGROUND: The identification of mismatch-repair (MMR) defective colon cancer is clinically relevant for diagnostic, prognostic and potentially also for treatment predictive purposes. Preselection of tumors for MMR analysis can be obtained with predictive models, which need to demonstrate ease...... of application and favorable reproducibility. METHODS: We validated the MMR index for the identification of prognostically favorable MMR deficient colon cancers and compared performance to 5 other prediction models. In total, 474 colon cancers diagnosed ≥ age 50 were evaluated with correlation between...... and efficiently identifies MMR defective colon cancers with high sensitivity and specificity. The model shows stable performance with low inter-observer variability and favorable performance when compared to other MMR predictive models....

  15. Is it time to move mismatch negativity into the clinic?

    Science.gov (United States)

    Schall, Ulrich

    2016-04-01

    Since its inception in the 1970s, the mismatch negativity (MMN) event-related potential has improved our understanding of pre-attentive detection of rule violations, which is a fundamental cognitive process considered by some a form of "primitive intelligence". The body of research to date ranges from animal studies (i.e. when investigating the neural mechanisms and pharmacological properties of MMN generation) to researching the psychophysiological nature of human consciousness. MMN therefore offers the possibility to detect abnormal functioning in the neural system involved in MMN generation, such as it occurs in some neurodevelopmental disorders or patients in vegetative state. While the clinical research data holds considerable promise for translation into clinical practice, standardization and normative data of an optimized (i.e. disorder-specific) MMN recording algorithm is needed in order for MMN to become a valuable clinical investigation tool.

  16. Depth distribution of Moho and tectonic framework in eastern Asian continent and its adjacent ocean areas

    Institute of Scientific and Technical Information of China (English)

    TENG; Jiwen; (滕吉文); ZENG; Rongsheng; (曾融生); YAN; Yafen; (闫雅芬); ZHANG; Hui; (张慧)

    2003-01-01

    With the results of interpretation of seismic sounding profiles acquired in the past 30 years in the continent of China and its adjacent countries andocean regions, such as Russia, Kazakhstan, Japan, India, Pakistan, Philippine ocean basin, Pacific and Indian Ocean, we compiled a 2D Moho distribution map forthe continent and its adjacent areas of eastern Asia. From the features of depth distribution and undulation of Moho, it is suggested that the eastern Asian region can be divided into 18 gradient belts with different sizes, 18 crustal blocks, 20 sediment basins and depression zones. The depth of Moho varies smoothly in each block, while the boundary (separating different blocks) delineates the abrupt variation of Moho depth. Then, some subjects,such as oregen and sediment basin, fault system and rift, plate boundary, ocean-continent coupling and tectonic framework, are discussed based on the distribution gradient belts and block partition features of Moho depth in the eastern Asia and its adjacent regions.

  17. Seismic motion attenuation relations in Sichuan and adjacent areas

    Institute of Scientific and Technical Information of China (English)

    LEI Jian-cheng; GAO Meng-tan; YU Yan-xiang

    2007-01-01

    The Sichuan and adjacent areas is divided into southwest China region (SWCR) and Sichuan Basin region (SCBR) according to tectonic backgrounds and seismic damage distribution features. 96 modern destructive earthquakes in SWCR and 40 in SCBR are gathered respectively. All their magnitude parameters are checked. Based on the statistic relations between epicentral intensity and magnitude as well as relation between sensible radius and magnitude, the near and far field seismic intensity attenuation features are represented and controlled. And then the seismic intensity attenuation relations along major axis, minor axis and mean axis are established separately. The systematic deviations of surface wave magnitude between China seismograph network and U.S. seismograph network are considered in this paper. By making use of the new attenuation relations of bedrock horizontal ground acceleration response spectrum in west U.S., the attenuation relations of bedrock horizontal ground acceleration response spectrum in SWCR and SCBR are digital transformed based on the attenuation model considering acceleration saturation of distance and magnitude in near field.

  18. DIGITAL BACKGROUND CALIBRATION OF CAPACITOR MISMATCHES AND HARMONIC DISTORTION IN PIPELINED ADC

    Institute of Scientific and Technical Information of China (English)

    Wu Chubin; Zhang Zhang; Gao Shanqing; Yu Changhu; Xie Guangjun

    2013-01-01

    A correlation-based digital background calibration algorithm for pipelined Analog-toDigital Converters (ADCs) is presented in this paper.The merit of the calibration algorithm is that the main errors information,which include the capacitor mismatches and residue amplifier distortion,are extracted integrally.A modified 1st pipelined stage is adopted to solve the signal overflow caused by the Pseudo-random Noise (PN) sequences.Behavioral simulation results verify the effectiveness of the algorithm.It improves the Signal-to-Noise-plus-Distortion Ratio (SNDR) and Spurious-Free-Dynamic-Range (SFDR) of the pipelined ADC from 41.8 dB to 78.3 dB and 55.6 dB to 98.6 dB,respectively,which is comparable to the prior arts.

  19. Donor-recipient gender mismatch in lung transplantation: impact on obliterative bronchiolitis and survival.

    Science.gov (United States)

    Roberts, David H; Wain, John C; Chang, Yuchiao; Ginns, Leo C

    2004-11-01

    Because of the shortage of donor lungs, liberalization of donor selection criteria in terms of age, gas exchange, and smoking history has been proposed. We evaluated a single-institution population of lung transplant recipients (n = 98) for donor-recipient gender matching. We measured overall survival, time to acute allograft rejection, and time to development of obliterative bronchiolitis (OB). We found significant improvement in overall survival for gender-mismatched donor and recipient pairs (p = 0.078) and a significantly shorter OB-free period for male donor and female recipient pairs (p = 0.017). These findings suggest that donor organ allocation based on gender may affect long-term survival and other outcomes after lung transplantation.

  20. The incidence of adjacent segment degeneration after cervical disc arthroplasty (CDA: a meta analysis of randomized controlled trials.

    Directory of Open Access Journals (Sweden)

    Baohui Yang

    Full Text Available BACKGROUND: Cervical disc arthroplasty is being used as an alternative degenerative disc disease treatment with fusion of the cervical spine in order to preserve motion. However, whether replacement arthoplasty in the spine achieves its primary patient centered objective of lowering the frequency of adjacent segment degeneration is not verified yet. METHODOLOGY: We conducted a meta-analysis according to the guidelines of the Cochrane Collaboration using databases including PubMed, Cochrane Central Register of Controlled Trials and Embase. The inclusion criteria were: 1 Randomized, controlled study of degenerative disc disease of the cervical spine involving single segment or double segments using Cervical disc arthroplasty (CDA with anterior cervical discectomy and fusion (ACDF as controls; 2 A minimum of two-year follow-up using imaging and clinical analyses; 3 Definite diagnostic evidences for "adjacent segment degeneration" and "adjacent segment disease"; 4 At least a minimum of 30 patients per population. Two authors independently selected trials; assessed methodological quality, extracted data and the results were pooled. RESULTS: No study has specifically compared the results of adjacent segment degenerative; Two papers describing 140 patients with 162 symptomatic cervical segment disorders and compared the rate of postoperative adjacent segment disease development between CDA and ACDF treatments, three publications describing the rate of adjacent-segment surgery including 1273 patients with symptomatic cervical segments. The result of the meta-analysis indicates that there were fewer the rate of adjacent segment disease and the rate for adjacent-segment surgery comparing CDA with ACDF, but the difference was not statistically significant. CONCLUSIONS: Based on available evidence, it cannot be concluded, that CDA can significantly reduce the postoperative rate of the adjacent segment degenerative and adjacent segment disease. However, due

  1. Educational mismatches for second generation migrants. An analysis of applied science graduates in the Netherlands

    NARCIS (Netherlands)

    Falcke, Swantje; Meng, Christoph; Nollen, Romy

    2016-01-01

    Educational mismatches, i.e. diferences between the education attained and required for a job have been found to negatively affect earnings and job satisfaction and thus lead to a lower return to education. In this paper we aim to see whether immigrants are more prone to educational mismatches and

  2. Luminescence of [Ru(bpy)2(dppz)]2+ Bound to RNA Mismatches

    Science.gov (United States)

    McConnell, Anna J.; Song, Hang; Barton, Jacqueline K.

    2013-01-01

    The luminescence of rac-[Ru(bpy)2(dppz)]2+ (bpy = 2,2′-bipyridine and dppz = dipyrido[3,2-a:2′,3′-c]phenazine) was explored in the presence of RNA oligonucleotides containing a single RNA mismatch (CA and GG) in order to develop a probe for RNA mismatches. While there is minimal luminescence of [Ru(bpy)2(dppz)]2+ in the presence of matched RNA due to weak binding, the luminescence is significantly enhanced in the presence of a single CA mismatch. The luminescence differential between CA mismatched and matched RNA is substantially higher compared to the DNA analogue, and therefore, [Ru(bpy)2(dppz)]2+ appears to be also a sensitive light switch probe for a CA mismatch in duplex RNA. Although the luminescence intensity is lower in the presence of RNA than DNA, Förster resonance energy transfer (FRET) between the donor ruthenium complex and FRET acceptor SYTO 61 is successfully exploited to amplify the luminescence in the presence of the mismatch. Luminescence and quenching studies with sodium iodide suggest that [Ru(bpy)2(dppz)]2+ binds to these mismatches via metalloinsertion from the minor groove. This work provides further evidence that metalloinsertion is a general binding mode of octahedral metal complexes to thermodynamically destabilized mismatches not only in DNA, but also in RNA. PMID:23968195

  3. Analytical Expressions for Harmonic Distortion at Low Frequencies due to Device Mismatch in CMOS Current Mirrors

    DEFF Research Database (Denmark)

    Bruun, Erik

    1999-01-01

    One of the origins of harmonic distortion in current mirrors is the inevitable mismatch between the mirror transistors. In this brief we examine both single current mirrors and complementary class AB current mirrors and develop analytical expressions for the mismatch induced harmonic distortion. ...

  4. Are Educational Mismatches Responsible for the "Inequality Increasing Effect" of Education?

    Science.gov (United States)

    Budria, Santiago

    2011-01-01

    This paper asks whether educational mismatches can account for the positive association between education and wage inequality found in the data. We use two different data sources, the European Community Household Panel and the Portuguese Labour Force Survey, and consider several types of mismatch, including overqualification, underqualification…

  5. Phenological mismatch and ontogenetic diet shifts interactively affect offspring condition in a passerine

    NARCIS (Netherlands)

    Samplonius, Jelmer M.; Kappers, Elena F.; Brands, Stef; Both, Christiaan

    1. Climate change may cause phenological asynchrony between trophic levels, which can lead to mismatched reproduction in animals. Although indirect effects of mismatch on fitness are well described, direct effects on parental prey choice are not. Moreover, direct effects of prey variation on

  6. Tolerance of DNA Mismatches in Dmc1 Recombinase-mediated DNA Strand Exchange.

    Science.gov (United States)

    Borgogno, María V; Monti, Mariela R; Zhao, Weixing; Sung, Patrick; Argaraña, Carlos E; Pezza, Roberto J

    2016-03-04

    Recombination between homologous chromosomes is required for the faithful meiotic segregation of chromosomes and leads to the generation of genetic diversity. The conserved meiosis-specific Dmc1 recombinase catalyzes homologous recombination triggered by DNA double strand breaks through the exchange of parental DNA sequences. Although providing an efficient rate of DNA strand exchange between polymorphic alleles, Dmc1 must also guard against recombination between divergent sequences. How DNA mismatches affect Dmc1-mediated DNA strand exchange is not understood. We have used fluorescence resonance energy transfer to study the mechanism of Dmc1-mediated strand exchange between DNA oligonucleotides with different degrees of heterology. The efficiency of strand exchange is highly sensitive to the location, type, and distribution of mismatches. Mismatches near the 3' end of the initiating DNA strand have a small effect, whereas most mismatches near the 5' end impede strand exchange dramatically. The Hop2-Mnd1 protein complex stimulates Dmc1-catalyzed strand exchange on homologous DNA or containing a single mismatch. We observed that Dmc1 can reject divergent DNA sequences while bypassing a few mismatches in the DNA sequence. Our findings have important implications in understanding meiotic recombination. First, Dmc1 acts as an initial barrier for heterologous recombination, with the mismatch repair system providing a second level of proofreading, to ensure that ectopic sequences are not recombined. Second, Dmc1 stepping over infrequent mismatches is likely critical for allowing recombination between the polymorphic sequences of homologous chromosomes, thus contributing to gene conversion and genetic diversity.

  7. A mismatch characterization and simulation environment for weak-to-strong inversion CMOS transistors

    Science.gov (United States)

    Velarde-Ramirez, J.; Vicente-Sanchez, G.; Serrano-Gotarredona, T.; Linares-Barranco, B.

    2005-06-01

    Mismatch analysis and simulation is crucial for modern analog design with submicron technologies, where transistors tend to be biased in weak and moderate inversion regions because of the down shrinking of power supply voltage. For optimum analog design where speed, power consumption, area, noise, and accuracy need to be carefully traded off, it is crucial to have available a precise estimation of transistor mismatch in order to avoid overdesign and consequently sacrify unnecessarily speed, power consumption, and area. In this paper we will provide experimental mismatch measurements of different 0.35um CMOS technologies. Each technology has been characterized for a large number of transistor sizes (25-30), by sweeping different width and length values. A large number of transistor curves are measured ranging over different possible biasing conditions. A recent mismatch model will be used to fit the data, and extract electrical parameters. Some of those parameters will be used to adjust the measured mismatch. As a result, a set of standard deviations and correlation coefficients result for the statistical characterization of the mismatch responsible parameters. The resulting electrical parameters, and statistical mismatch parameters are then used in the Spectre simulator of Cadence design environment, to implement the mismatch models using the AHDL behavioral level Spectre description language. The paper shows good agreement between measured data, predicted data, and simulated data.

  8. Genome instability of mis-match repair and its role in carcinogenesis due to radiation

    Energy Technology Data Exchange (ETDEWEB)

    Munakata, Nobuo; Morohoshi, Fumiko [National Cancer Center, Tokyo (Japan). Research Inst

    1999-02-01

    Homologue genes, mutS and mutL have been known as a key gene for mismatch repair in E. coli. In this study, identification of such homologue genes in the nematode was attempted using caenorhabditis elegans and three kinds of mutS homologues (mshG, mshZ and mshF) and 2 kinds of mutL ones were identified. From after isolation of these genes, base sequences were analyzed. Then, an insertion mutant in which Tcl transposon is inserted in Exon 13 positioned at the center of mshF was screened and its homozygote where breakage of transposon in somatic cells occurred frequently was obtained and its morphological changes were not significant. In the nematoda, we detected a highly conserved domain in mutS family gene, which is commonly present in yeast and human genes. Based on the amino acid sequence of this domain, four kinds of primers were constructed for PCR reaction using the whole DNA from the nematoda as a template and four DNA fragments of which sizes were almost corresponding to the homologue proteins were produced. From screening of Tc1 insertion mutant for 8 mismatch repair genes, three strains; mshF, rqhW and RqhY were obtained and the gene structures and the positions of Tc1 insertion in these strains were determined. The sensitivities to ionizing radiation, UV and alkyl reagent of these strains were not significantly different from those of the wild strain. (M.N.)

  9. Gas samples of Afghanistan and adjacent areas (gasafg.shp)

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This shapefile contains points that describe the location of gas samples collected in Afghanistan and adjacent areas and the results of organic geochemical analysis.

  10. Ollier's disease in association with adjacent fibromatosis

    Energy Technology Data Exchange (ETDEWEB)

    Al-Ismail, Khalid; Torreggiani, William C.; Munk, Peter L. [Department of Radiology, Vancouver General Hospital, University of British Columbia, 899 West l2th Avenue, Vancouver, BC (Canada); O' Connell, John X.; Nicolaou, Savvakis [Department of Pathology, Vancouver General Hospital, University of British Columbia, 899 West l2th Avenue, Vancouver, BC (Canada); Masri, Bassam A. [Department of Orthopaedics, Vancouver General Hospital, University of British Columbia, 899 West l2th Avenue, Vancouver, BC (Canada)

    2002-08-01

    Ollier's disease (enchondromatosis) is a nonhereditary disorder of mesodermal dysplasia. It is characterized by the presence of multiple enchondromas that typically affect the metaphyseal ends of bones. The association of Ollier's disease with adjacent fibromatosis has, to our knowledge, not been previously described. We report a case of Ollier's disease in association with soft tissue fibromatosis adjacent to the involved upper arm. (orig.)

  11. Scale Mismatches in Social-Ecological Systems: Causes, Consequences, and Solutions

    Directory of Open Access Journals (Sweden)

    Graeme S. Cumming

    2006-06-01

    Full Text Available Scale is a concept that transcends disciplinary boundaries. In ecology and geography, scale is usually defined in terms of spatial and temporal dimensions. Sociological scale also incorporates space and time, but adds ideas about representation and organization. Although spatial and temporal location determine the context for social and ecological dynamics, social-ecological interactions can create dynamic feedback loops in which humans both influence and are influenced by ecosystem processes. We hypothesize that many of the problems encountered by societies in managing natural resources arise because of a mismatch between the scale of management and the scale(s of the ecological processes being managed. We use examples from southern Africa and the southern United States to address four main questions: (1 What is a "scale mismatch?" (2 How are scale mismatches generated? (3 What are the consequences of scale mismatches? (4 How can scale mismatches be resolved? Scale mismatches occur when the scale of environmental variation and the scale of social organization in which the responsibility for management resides are aligned in such a way that one or more functions of the social-ecological system are disrupted, inefficiencies occur, and/or important components of the system are lost. They are generated by a wide range of social, ecological, and linked social-ecological processes. Mismatches between the scales of ecological processes and the institutions that are responsible for managing them can contribute to a decrease in social-ecological resilience, including the mismanagement of natural resources and a decrease in human well-being. Solutions to scale mismatches usually require institutional changes at more than one hierarchical level. Long-term solutions to scale mismatch problems will depend on social learning and the development of flexible institutions that can adjust and reorganize in response to changes in ecosystems. Further research is

  12. Solution structure of DAPI selectively bound in the minor groove of a DNA T.T mismatch-containing site: NMR and molecular dynamics studies.

    Science.gov (United States)

    Trotta, E; Paci, M

    1998-01-01

    The solution structure of the complex between 4', 6-diamidino-2-phenylindole (DAPI) and DNA oligomer [d(GCGATTCGC)]2, containing a central T.T mismatch, has been characterized by combined use of proton one- and two-dimensional NMR spectroscopy, molecular mechanics and molecular dynamics computations including relaxation matrix refinement. The results show that the DAPI molecule binds in the minor groove of the central region 5'-ATT-3' of the DNA oligomer, which predominantly adopts a duplex structure with a global right-handed B-like conformation. In the final models of the complex, the DAPI molecule is located nearly isohelical with its NH indole proton oriented towards the DNA helix axis and forming a bifurcated hydrogen bond with the carbonyl O2 groups of a mismatched T5 and the T6 residue of the opposite strand. Mismatched thymines adopt a wobble base pair conformation and are found stacked between the flanking base pairs, inducing only minor local conformational changes in global duplex structure. In addition, no other binding mechanisms were observed, showing that minor groove binding of DAPI to the mismatch-containing site is favoured in comparison with any other previously reported interaction with G.C sequences. PMID:9753740

  13. Genome instability in mismatch repair and its role on radiation-induced cancer

    Energy Technology Data Exchange (ETDEWEB)

    Munakata, Nobuo; Morohoshi, Fumiko [National Cancer Center, Tokyo (Japan). Research Inst

    2000-02-01

    Studies on mismatch repair mechanism have been progressed using Caenorhabditis elegans, a nematode since its genetic analysis is comparatively easy. In this study, homologue gene for mismatch repairing of nematoda were investigated and 3 kinds of homologue genes of mut S; msh G, msh Z and msh F and two kinds of mut L homologue genes were identified. Based on these genes, each cDNA was isolated aiming to determine the sequence and clarify the phylogenetic relationship. Either of msh G, msh Z and msh F is present in the cDNA library, suggesting that these genes might be expressed in every stage of development. Northern analysis was made using the RNA fractions extracted from nematoda at various stages of development as a probe for cDNA of msh G and msh Z, and each corresponding bands were detected for the imago and the matured larva, but not so distinct for the larva and embryo, suggesting that both genes would be regulated in the transcription step at each development stage. Then, resistant larva in which Tcl transposon is activated was cultured and its DNA was extracted to use as a template DNA. Thus, Tcl transposon inserted strains for three of 8 repair related genes were obtained. The passages of these strains were kept comparatively stable. However, the sensitivities to ionizing radiation, ultraviolet light and alkyl agents of these inserted strains were not so different from the control. PCR reaction revealed that DNA fragments of which Tcl was excluded were produced in a certain stage of development. This suggest in vivo exclusion of Tcl in somatic cells. (M.N.)

  14. Rhythmic and melodic deviations in musical sequences recruit different cortical areas for mismatch detection

    Directory of Open Access Journals (Sweden)

    Claudia eLappe

    2013-06-01

    Full Text Available The mismatch negativity (MMN, an event-related potential (ERP representing the violation of an acoustic regularity, is considered as a pre-attentive change detection mechanism at the sensory level on the one hand and as a prediction error signal on the other hand, suggesting that bottom-up as well as top-down processes are involved in its generation. Rhythmic and melodic deviations within a musical sequence elicit a mismatch negativity in musically trained subjects, indicating that acquired musical expertise leads to better discrimination accuracy of musical material and better predictions about upcoming musical events. Expectation violations to musical material could therefore recruit neural generators that reflect top-down processes that are based on musical knowledge.We describe the neural generators of the musical MMN for rhythmic and melodic material after a short-term sensorimotor-auditory training. We compare the localization of musical MMN data from two previous MEG studies by applying beamformer analysis. One study focused on the melodic harmonic progression whereas the other study focused on rhythmic progression. The MMN to melodic deviations revealed significant right hemispheric neural activation in the superior temporal gyrus (STG, inferior frontal cortex (IFC, and the superior frontal (SFG and orbitofrontal (OFG gyri. IFC and SFG activation was also observed in the left hemisphere. In contrast, beamformer analysis of the data from the rhythm study revealed bilatral activation within the vicinity of auditory cortices and in the inferior parietal lobule, an area that has recently been implied in temporal processing. We conclude that different cortical networks are activated in the analysis of the temporal and the melodic content of musical material, and discuss these networks in the context of the the dual-pathway model of auditory processing.

  15. Adaptive bimaterial lattices to mitigate thermal expansion mismatch stresses in satellite structures

    Science.gov (United States)

    Toropova, Marina M.; Steeves, Craig A.

    2015-08-01

    Earth-orbiting satellites regularly pass from sunlight to shade and back; these transitions are typically accompanied by significant temperature changes. When adjoining parts of a satellite that are made of different materials are subjected to large temperature changes, thermal mismatch stresses arise that are a function of the temperature change and the difference in coefficients of thermal expansion (CTEs) between the two materials. These thermal stresses are linked to undesirable deformation and, through long-term cycling, fatigue and failure of the structure. This paper describes a type of anisotropic lattice that can serve as a stress-free adaptor between two materials, eliminating thermal mismatch stresses and their concomitant consequences. The lattices consist of planar nonidentical anisotropic bimaterial cells, each designed based on a virtual triangle. Physically the cells consist of a triangle made of material with higher CTE surrounded by a hexagon made of material with lower CTE. Different skew angles of the hexagon make a particular cell and the whole lattice anisotropic. The cells can be designed and combined in a lattice in such a way that one edge of the lattice has CTE that coincides with the CTE of the first part of the structure (substrate 1), while the other edge of the lattice has CTE equal to the CTE of the second part of the structure (substrate 2). If all joints between the parts of each cell, neighbouring cells, and the lattice and the substrates are pinned, the whole structure will be free of thermal stresses. This paper will discuss the fundamental principles governing such lattices, their refinement for special circumstances, and opportunities for improving the structural performance of the lattices. This will be presented coupled to a rational strategy for lattice design.

  16. 基于征兆邻搜索优化聚类和自组织映射神经网络的多病害诊断%Method for multi-disease diagnosis based on optimized symptom adjacent-searching clustering and SOM NN

    Institute of Scientific and Technical Information of China (English)

    张可; 柴毅; 匡金骏

    2011-01-01

    Complex processes have the characteristic of multifarious, and simultaneity multi-abnormality is familiar in the area. Aimed at this problem, the representations and descriptions of symptom with abnormality were analyzed. Based on an existing mono-fault (mono-disease) diagnosis method by Self-Organizing Map Neural Networks (SOM NN), a multi-fault (multi-disease) diagnosis model was developed. This proposed SOM NN-based model has three layers, it has no need to study multi-disease samples. According to the analysis, Euclidean distance was taken as the main discrimination, and the sufficiency and necessity of symptom adjacent-searching were analyzed. The adjacent-searching algorithm was optimized and improved. Taking tomato disease as an example, the disease symptoms were extracted, and the mapping relationship between disease and symptom were developed. Using the method, the correct cluster results of disease symptom combinations were obtained. This model can achieve an accurate diagnosis of multi-diseases. The simulation results show that the proposed model performs well and the proposed multi-disease diagnosis is effective.%复杂过程具有多样性的特点,常出现多种异常同时发生的情况.针对该问题,对异常过程中征兆的表现及其描述进行了分析,在已有自组织特征映射神经网络(SOMNN,Self-organizing Map Neural Networks)单一故障(病害)诊断的方法的基础上,提出了具有3级分析结构的SOMNN的多诊断模型.该模型以欧几里德距离作为主要判别条件对邻搜索方法进行优化和改进,在诊断过程中不用学习多病害样本.并在此基础上以农作物中具有代表性的番茄病害为例,提取病害征兆,建立病害与病害征兆之间的映射关系,完成了对病害征兆组合的分类,通过对实例的仿真,证明了该方法在多病害诊断上能获得良好的效果.

  17. Study on relationship between historical volcanic eruptions and historical strong earthquakes in China and its adjacent regions

    Institute of Scientific and Technical Information of China (English)

    1999-01-01

    This thesis lists and describes 6 pairs of tectonic events, i.e., historical volcanic eruptions associated with historical strong earthquakes, based on the analysis for the records of historical volcanic eruptions and historical strong earthquakes in China and its adjacent region since the first record. And discusses the relationship between historical eruptions and strong earthquakes by means of analyzing the characteristics of tectonic events themselves, plate movement, regional seismicity, and regional stress environment in China and its adjacent region.

  18. Snowshoe hares display limited phenotypic plasticity to mismatch in seasonal camouflage

    Science.gov (United States)

    Zimova, Marketa; Mills, L. Scott; Lukacs, Paul M.; Mitchell, Michael S.

    2014-01-01

    As duration of snow cover decreases owing to climate change, species undergoing seasonal colour moults can become colour mismatched with their background. The immediate adaptive solution to this mismatch is phenotypic plasticity, either in phenology of seasonal colour moults or in behaviours that reduce mismatch or its consequences. We observed nearly 200 snowshoe hares across a wide range of snow conditions and two study sites in Montana, USA, and found minimal plasticity in response to mismatch between coat colour and background. We found that moult phenology varied between study sites, likely due to differences in photoperiod and climate, but was largely fixed within study sites with only minimal plasticity to snow conditions during the spring white-to-brown moult. We also found no evidence that hares modify their behaviour in response to colour mismatch. Hiding and fleeing behaviours and resting spot preference of hares were more affected by variables related to season, site and concealment by vegetation, than by colour mismatch. We conclude that plasticity in moult phenology and behaviours in snowshoe hares is insufficient for adaptation to camouflage mismatch, suggesting that any future adaptation to climate change will require natural selection on moult phenology or behaviour.

  19. Quality of Experience for Large Ultra-High-Resolution Tiled Displays with Synchronization Mismatch

    Directory of Open Access Journals (Sweden)

    Deshpande Sachin

    2011-01-01

    Full Text Available This paper relates to quality of experience when viewing images, video, or other content on large ultra-high-resolution displays made from individual display tiles. We define experiments to measure vernier acuity caused by synchronization mismatch for moving images. The experiments are used to obtain synchronization mismatch acuity threshold as a function of object velocity and as a function of occlusion or gap width. Our main motivation for measuring the synchronization mismatch vernier acuity is its relevance in the application of tiled display systems, which create a single contiguous image using individual discrete panels arranged in a matrix with each panel utilizing a distributed synchronization algorithm to display parts of the overall image. We also propose a subjective assessment method for perception evaluation of synchronization mismatch for large ultra-high-resolution tiled displays. For this, we design a synchronization mismatch measurement test video set for various tile configurations for various interpanel synchronization mismatch values. The proposed method for synchronization mismatch perception can evaluate tiled displays with or without tile bezels. The results from this work can help during design of low-cost tiled display systems, which utilize distributed synchronization mechanisms for a contiguous or bezeled image display.

  20. Mismatch repair status and synchronous metastases in colorectal cancer

    DEFF Research Database (Denmark)

    Nordholm-Carstensen, Andreas; Krarup, Peter-Martin; Morton, Dion

    2015-01-01

    The causality between the metastatic potential, mismatch repair status (MMR) and survival in colorectal cancer (CRC) is complex. This study aimed to investigate the impact of MMR in CRC on the occurrence of synchronous metastases (SCCM) and survival in patients with SCCM on a national basis....... A nationwide cohort study of 6,692 patients diagnosed with CRC between 2010 and 2012 was conducted. Data were prospectively entered into the Danish Colorectal Cancer Group's database and merged with data from the Danish Pathology Registry and the National Patient Registry. Multivariable and multinomial...... metastases (aOR = 0.69, 95% CI:0.26-1.29, p = 0.436) were unaffected by MMR. MMR in patients with SCCM had no impact on survival (Cox: adjusted Hazard Ratio (aHR) = 0.76, 95% CI: 0.54-1.06, p = 0.101; Proportional excess hazards: aHR = 0.73, 95% CI: 0.50-1.07, p = 0.111) when adjusting for other prognostic...

  1. Mismatch negativity of ERP in cross-modal attention

    Institute of Scientific and Technical Information of China (English)

    罗跃嘉; 魏景汉

    1997-01-01

    Event-related potentials were measured in 12 healthy youth subjects aged 19-22 using the paradigm "cross-modal and delayed response" which is able to improve unattended purity and to avoid the effect of task target on the deviant components of ERP. The experiment included two conditions: (i) Attend visual modality, ignore auditory modality; (ii) attend auditory modality, ignore visual modality. The stimuli under the two conditions were the same. The difference wave was obtained by subtracting ERPs of the standard stimuli from that of the deviant stim-uli. The present results showed that mismatch negativity (MMN), N2b and P3 components can be produced in the auditory and visual modalities under attention condition. However, only MMN was observed in the two modalities un-der inattention condition. Auditory and visual MMN have some features in common: their largest MMN wave peaks were distributed respectively over their primary sensory projection areas of the scalp under attention condition, but over front

  2. Neural mechanisms of mismatch negativity dysfunction in schizophrenia.

    Science.gov (United States)

    Lee, M; Sehatpour, P; Hoptman, M J; Lakatos, P; Dias, E C; Kantrowitz, J T; Martinez, A M; Javitt, D C

    2017-02-07

    Schizophrenia is associated with cognitive deficits that reflect impaired cortical information processing. Mismatch negativity (MMN) indexes pre-attentive information processing dysfunction at the level of primary auditory cortex. This study investigates mechanisms underlying MMN impairments in schizophrenia using event-related potential, event-related spectral decomposition (ERSP) and resting state functional connectivity (rsfcMRI) approaches. For this study, MMN data to frequency, intensity and duration-deviants were analyzed from 69 schizophrenia patients and 38 healthy controls. rsfcMRI was obtained from a subsample of 38 patients and 23 controls. As expected, schizophrenia patients showed highly significant, large effect size (P=0.0004, d=1.0) deficits in MMN generation across deviant types. In ERSP analyses, responses to deviants occurred primarily the theta (4-7 Hz) frequency range consistent with distributed corticocortical processing, whereas responses to standards occurred primarily in alpha (8-12 Hz) range consistent with known frequencies of thalamocortical activation. Independent deficits in schizophrenia were observed in both the theta response to deviants (P=0.021) and the alpha-response to standards (P=0.003). At the single-trial level, differential patterns of response were observed for frequency vs duration/intensity deviants, along with At the network level, MMN deficits engaged canonical somatomotor, ventral attention and default networks, with a differential pattern of engagement across deviant types (PMolecular Psychiatry advance online publication, 7 February 2017; doi:10.1038/mp.2017.3.

  3. Mammalian mismatches in nucleotide metabolism: implications for xenotransplantation.

    Science.gov (United States)

    Khalpey, Zain; Yuen, Ada H Y; Lavitrano, Marialuisa; McGregor, Christopher G A; Kalsi, Kameljit K; Yacoub, Magdi H; Smolenski, Ryszard T

    2007-10-01

    Acute humoral rejection (AHR) limits the clinical application of animal organs for xenotransplantation. Mammalian disparities in nucleotide metabolism may contribute significantly to the microvascular component in AHR; these, however remain ill-defined. We evaluated the extent of species-specific differences in nucleotide metabolism. HPLC analysis was performed on venous blood samples (nucleotide metabolites) and heart biopsies (purine enzymes) from wild type mice, rats, pigs, baboons, and human donors.Ecto-5'-nucleotidase (E5'N) activities were 4-fold lower in pigs and baboon hearts compared to human and mice hearts while rat activity was highest. Similar differences between pigs and humans were also observed with kidneys and endothelial cells. More than 10-fold differences were observed with other purine enzymes. AMP deaminase (AMPD) activity was exceptionally high in mice but very low in pig and baboon hearts. Adenosine deaminase (ADA) activity was highest in baboons. Adenosine kinase (AK) activity was more consistent across different species. Pig blood had the highest levels of hypoxanthine, inosine and adenine. Human blood uric acid concentration was almost 100 times higher than in other species studied. We conclude that species-specific differences in nucleotide metabolism may affect compatibility of pig organs within a human metabolic environment. Furthermore, nucleotide metabolic mismatches may affect clinical relevance of animal organ transplant models. Supplementation of deficient precursors or application of inhibitors of nucleotide metabolism (e.g., allopurinol) or transgenic upregulation of E5'N may overcome some of these differences.

  4. Systematic misestimation in a vernier task arising from contrast mismatch.

    Science.gov (United States)

    Sun, Hao; Lee, Barry B; Baraas, Rigmor C

    2008-01-01

    Luminance signals mediated by the magnocellular (MC) pathway play an important role in vernier tasks. MC ganglion cells show a phase advance in their responses to sinusoidal stimuli with increasing contrast due to contrast gain control mechanisms. If the phase information in MC ganglion cell responses were utilized by central mechanisms in vernier tasks, one might expect systematic errors caused by the phase advance. This systematic error may contribute to the contrast paradox phenomenon, where vernier performance deteriorates, rather than improves, when only one of the target pair increases in contrast. Vernier psychometric functions for a pair of gratings of mismatched contrast were measured to seek such misestimation. In associated electrophysiological experiments, MC and parvocellular (PC) ganglion cells' responses to similar stimuli were measured to provide a physiological reference. The psychophysical experiments show that a high-contrast grating is perceived as phase advanced in the drift direction compared to a low-contrast grating, especially at a high drift rate (8 Hz). The size of the phase advance was comparable to that seen in MC cells under similar stimulus conditions. These results are consistent with the MC pathway supporting vernier performance with achromatic gratings. The shifts in vernier psychometric functions were negligible for pairs of chromatic gratings under the conditions tested here, consistent with the lack of phase advance both in responses of PC ganglion cells and in frequency-doubled chromatic responses of MC ganglion cells.

  5. Anterior insula coordinates hierarchical processing of tactile mismatch responses

    Science.gov (United States)

    Allen, Micah; Fardo, Francesca; Dietz, Martin J.; Hillebrandt, Hauke; Friston, Karl J.; Rees, Geraint; Roepstorff, Andreas

    2016-01-01

    The body underlies our sense of self, emotion, and agency. Signals arising from the skin convey warmth, social touch, and the physical characteristics of external stimuli. Surprising or unexpected tactile sensations can herald events of motivational salience, including imminent threats (e.g., an insect bite) and hedonic rewards (e.g., a caressing touch). Awareness of such events is thought to depend upon the hierarchical integration of body-related mismatch responses by the anterior insula. To investigate this possibility, we measured brain activity using functional magnetic resonance imaging, while healthy participants performed a roving tactile oddball task. Mass-univariate analysis demonstrated robust activations in limbic, somatosensory, and prefrontal cortical areas previously implicated in tactile deviancy, body awareness, and cognitive control. Dynamic Causal Modelling revealed that unexpected stimuli increased the strength of forward connections along a caudal to rostral hierarchy—projecting from thalamic and somatosensory regions towards insula, cingulate and prefrontal cortices. Within this ascending flow of sensory information, the AIC was the only region to show increased backwards connectivity to the somatosensory cortex, augmenting a reciprocal exchange of neuronal signals. Further, participants who rated stimulus changes as easier to detect showed stronger modulation of descending PFC to AIC connections by deviance. These results suggest that the AIC coordinates hierarchical processing of tactile prediction error. They are interpreted in support of an embodied predictive coding model where AIC mediated body awareness is involved in anchoring a global neuronal workspace. PMID:26584870

  6. The Visual Mismatch Negativity Elicited with Visual Speech Stimuli

    Directory of Open Access Journals (Sweden)

    Benjamin T. Files

    2013-07-01

    Full Text Available The visual mismatch negativity (vMMN, deriving from the brain’s response to stimulus deviance, is thought to be generated by the cortex that represents the stimulus. The vMMN response to visual speech stimuli was used in a study of the lateralization of visual speech processing. Previous research suggested that the right posterior temporal cortex has specialization for processing simple non-speech face gestures, and the left posterior temporal cortex has specialization for processing visual speech gestures. Here, visual speech consonant-vowel (CV stimuli with controlled perceptual dissimilarities were presented in an electroencephalography (EEG vMMN paradigm. The vMMNs were obtained using the comparison of event-related potentials (ERPs for separate CVs in their roles as deviant versus their roles as standard. Four separate vMMN contrasts were tested, two with the perceptually far deviants (i.e., zha or fa and two with the near deviants (i.e., zha or ta. Only far deviants evoked the vMMN response over the left posterior temporal cortex. All four deviants evoked vMMNs over the right posterior temporal cortex. The results are interpreted as evidence that the left posterior temporal cortex represents speech stimuli that are perceived as different consonants, and the right posterior temporal cortex represents face gestures that may not be discriminable as different CVs.

  7. A Modified Protocol with Improved Detection Rate for Mis-Matched Donor HLA from Low Quantities of DNA in Urine Samples from Kidney Graft Recipients.

    Science.gov (United States)

    Kwok, Janette; Choi, Leo C W; Ho, Jenny C Y; Chan, Gavin S W; Mok, Maggie M Y; Lam, Man-Fei; Chak, Wai-Leung; Cheuk, Au; Chau, Ka-Foon; Tong, Matthew; Chan, Kwok-Wah; Chan, Tak-Mao

    2016-01-01

    Urine from kidney transplant recipient has proven to be a viable source for donor DNA. However, an optimized protocol would be required to determine mis-matched donor HLA specificities in view of the scarcity of DNA obtained in some cases. In this study, fresh early morning urine specimens were obtained from 155 kidney transplant recipients with known donor HLA phenotype. DNA was extracted and typing of HLA-A, B and DRB1 loci by polymerase chain reaction-specific sequence primers was performed using tailor-made condition according to the concentration of extracted DNA. HLA typing of DNA extracted from urine revealed both recipient and donor HLA phenotypes, allowing the deduction of the unknown donor HLA and hence the degree of HLA mis-match. By adopting the modified procedures, mis-matched donor HLA phenotypes were successfully deduced in all of 35 tested urine samples at DNA quantities spanning the range of 620-24,000 ng. This urine-based method offers a promising and reliable non-invasive means for the identification of mis-matched donor HLA antigens in kidney transplant recipients with unknown donor HLA phenotype or otherwise inadequate donor information.

  8. Influence of sequence mismatches on the specificity of recombinase polymerase amplification technology.

    Science.gov (United States)

    Daher, Rana K; Stewart, Gale; Boissinot, Maurice; Boudreau, Dominique K; Bergeron, Michel G

    2015-04-01

    Recombinase polymerase amplification (RPA) technology relies on three major proteins, recombinase proteins, single-strand binding proteins, and polymerases, to specifically amplify nucleic acid sequences in an isothermal format. The performance of RPA with respect to sequence mismatches of closely-related non-target molecules is not well documented and the influence of the number and distribution of mismatches in DNA sequences on RPA amplification reaction is not well understood. We investigated the specificity of RPA by testing closely-related species bearing naturally occurring mismatches for the tuf gene sequence of Pseudomonas aeruginosa and/or Mycobacterium tuberculosis and for the cfb gene sequence of Streptococcus agalactiae. In addition, the impact of the number and distribution of mismatches on RPA efficiency was assessed by synthetically generating 14 types of mismatched forward primers for detecting five bacterial species of high diagnostic relevance such as Clostridium difficile, Staphylococcus aureus, S. agalactiae, P. aeruginosa, and M. tuberculosis as well as Bacillus atropheus subsp. globigii for which we use the spores as internal control in diagnostic assays. A total of 87 mismatched primers were tested in this study. We observed that target specific RPA primers with mismatches (n > 1) at their 3'extrimity hampered RPA reaction. In addition, 3 mismatches covering both extremities and the center of the primer sequence negatively affected RPA yield. We demonstrated that the specificity of RPA was multifactorial. Therefore its application in clinical settings must be selected and validated a priori. We recommend that the selection of a target gene must consider the presence of closely-related non-target genes. It is advisable to choose target regions with a high number of mismatches (≥36%, relative to the size of amplicon) with respect to closely-related species and the best case scenario would be by choosing a unique target gene.

  9. Capacitor Mismatch Error Cancellation Technique for a Successive Approximation A/D Converter

    DEFF Research Database (Denmark)

    Zheng, Zhiliang; Moon, Un-Ku; Steensgaard-Madsen, Jesper

    1999-01-01

    An error cancellation technique is described for suppressing capacitor mismatch in a successive approximation A/D converter. At the cost of a 50% increase in conversion time, the first-order capacitor mismatch error is cancelled. Methods for achieving top-plate parasitic insensitive operation...... are described, and the use of a gain- and offset-compensated opamp is explained. SWITCAP simulation results show that the proposed 16-bit SAR ADC can achieve an SNDR of over 91 dB under non-ideal conditions, including 1% 3 sigma nominal capacitor mismatch, 10-20% randomized parasitic capacitors, 66 dB opamp...

  10. Early verb constructions in French: adjacency on the left edge.

    Science.gov (United States)

    Veneziano, Edy; Clark, Eve V

    2016-11-01

    Children acquiring French elaborate their early verb constructions by adding adjacent morphemes incrementally at the left edge of core verbs. This hypothesis was tested with 2657 verb uses from four children between 1;3 and 2;7. Consistent with the Adjacency Hypothesis, children added clitic subjects first only to present tense forms (as in il saute 'he jumps'); modals to infinitives (as in faut sauter 'has to jump'); and auxiliaries to past participles (as in a sauté 'has jumped'). Only after this did the children add subjects to the left of a modal or auxiliary, as in elle veut sauter 'she wants to jump', or elle a sauté 'she has jumped'. The order in which these elements were added, and the development in the frequencies of the constructions, all support the predictions of the Adjacency Hypothesis for left edge development in early verb constructions.

  11. Laplacian versus adjacency matrix in quantum walk search

    Science.gov (United States)

    Wong, Thomas G.; Tarrataca, Luís; Nahimov, Nikolay

    2016-10-01

    A quantum particle evolving by Schrödinger's equation contains, from the kinetic energy of the particle, a term in its Hamiltonian proportional to Laplace's operator. In discrete space, this is replaced by the discrete or graph Laplacian, which gives rise to a continuous-time quantum walk. Besides this natural definition, some quantum walk algorithms instead use the adjacency matrix to effect the walk. While this is equivalent to the Laplacian for regular graphs, it is different for non-regular graphs and is thus an inequivalent quantum walk. We algorithmically explore this distinction by analyzing search on the complete bipartite graph with multiple marked vertices, using both the Laplacian and adjacency matrix. The two walks differ qualitatively and quantitatively in their required jumping rate, runtime, sampling of marked vertices, and in what constitutes a natural initial state. Thus the choice of the Laplacian or adjacency matrix to effect the walk has important algorithmic consequences.

  12. Emission of pesticides during drilling and deposition in adjacent areas

    Directory of Open Access Journals (Sweden)

    Heimbach, Udo

    2014-02-01

    Full Text Available In seven experiments seeds of maize, oil seed rape and barley, treated with neonicotinoids, were sown using pneumatic drilling equipment with deflectors attached in case of pneumatic suction systems. Directly adjacent to the drilled area of usually about 50 m width were replicated areas with bare soil as well as with crops. During maize (Zea mays drilling flowering oil seed rape (Brassica napus and during drilling of barley (Hordeum vulgare and oil seed rape flowering white mustard (Sinapis alba was adjacent. The amount of residues in the adjacent non crop areas in Petri dishes being distributed on the bare soil declined only slowly from 1 to 20 m distance from the area drilled. Seed batches with more abrasion and higher content of active substances in the dust resulted in higher residues off crop. After drilling of maize in four experiments in Petri dishes in adjacent non crop areas in 1-5 m distance between 0.02 and 0.40 g a.s./ha of neonicotinoids and in the adjacent oil seed rape a total of 0.05–0.80 g a.s./ha were detected. After drilling oil seed rape or barley these values were only 0.02–0.06 g a.s./ha in Petri dishes in non crop areas and 0.03-0.08 g a.s./ha in total in adjacent white mustard. In gauze net samplers installed vertically in 3 m distance in non crop areas up to seven times higher values were detected compared to Petri dishes.

  13. Nonlinear spin wave coupling in adjacent magnonic crystals

    Energy Technology Data Exchange (ETDEWEB)

    Sadovnikov, A. V., E-mail: sadovnikovav@gmail.com; Nikitov, S. A. [Laboratory “Metamaterials,” Saratov State University, Saratov 410012 (Russian Federation); Kotel' nikov Institute of Radioengineering and Electronics, Russian Academy of Sciences, Moscow 125009 (Russian Federation); Beginin, E. N.; Morozova, M. A.; Sharaevskii, Yu. P.; Grishin, S. V.; Sheshukova, S. E. [Laboratory “Metamaterials,” Saratov State University, Saratov 410012 (Russian Federation)

    2016-07-25

    We have experimentally studied the coupling of spin waves in the adjacent magnonic crystals. Space- and time-resolved Brillouin light-scattering spectroscopy is used to demonstrate the frequency and intensity dependent spin-wave energy exchange between the side-coupled magnonic crystals. The experiments and the numerical simulation of spin wave propagation in the coupled periodic structures show that the nonlinear phase shift of spin wave in the adjacent magnonic crystals leads to the nonlinear switching regime at the frequencies near the forbidden magnonic gap. The proposed side-coupled magnonic crystals represent a significant advance towards the all-magnonic signal processing in the integrated magnonic circuits.

  14. Wall shear stress in intracranial aneurysms and adjacent arteries

    Institute of Scientific and Technical Information of China (English)

    Fuyu Wang; Bainan Xu; Zhenghui Sun; Chen Wu; Xiaojun Zhang

    2013-01-01

    Hemodynamic parameters play an important role in aneurysm formation and growth. However, it is difficult to directly observe a rapidly growing de novo aneurysm in a patient. To investigate possible associations between hemodynamic parameters and the formation and growth of intracranial aneurysms, the present study constructed a computational model of a case with an internal carotid artery aneurysm and an anterior communicating artery aneurysm, based on the CT angiography findings of a patient. To simulate the formation of the anterior communicating artery aneurysm and the growth of the internal carotid artery aneurysm, we then constructed a model that virtually removed the anterior communicating artery aneurysm, and a further two models that also progressively decreased the size of the internal carotid artery aneurysm. Computational simulations of the fluid dynamics of the four models were performed under pulsatile flow conditions, and wall shear stress was compared among the different models. In the three aneurysm growth models, increasing size of the aneurysm was associated with an increased area of low wall shear stress, a significant decrease in wall shear stress at the dome of the aneurysm, and a significant change in the wall shear stress of the parent artery. The wall shear stress of the anterior communicating artery remained low, and was significantly lower than the wall shear stress at the bifurcation of the internal carotid artery or the bifurcation of the middle cerebral artery. After formation of the anterior communicating artery aneurysm, the wall shear stress at the dome of the internal carotid artery aneurysm increased significantly, and the wall shear stress in the upstream arteries also changed significantly. These findings indicate that low wall shear stress may be associated with the initiation and growth of aneurysms, and that aneurysm formation and growth may influence hemodynamic parameters in the local and adjacent arteries.

  15. 临床症状与弥散加权成像不匹配的基底动脉急性闭塞患者的血管内再通治疗%Endovascular recanalization therapy of basilar artery occlusion based on clinical-diffusion mismatch

    Institute of Scientific and Technical Information of China (English)

    张海峰; 许德兵; 练学淦; 葛树勇; 刘玲; 刘新峰; 张仁良

    2011-01-01

    Objective To investigate the feasibility of performing endovascular recanalization therapy (ERT) in patients with acute basilar artery occlusion (BAO) of broadened time window ( 5^24 hours) based on clinical-diffusion mismatch (CDM). Methods A total of 11 CDM patients whose Glasgow Coma Scale (GCS) score <8 at admission were recruited and the diffusion-weighted imaging (DWI) did not find their brainstem reticular formation and bilateral damage to hypothalamus. Intra-arterial thrombolysis (1AT) with rt-PA alone or in combination with IAT, percutaneous transluminal angioplasty (PTA) and stenting were used. At the same time, the degree of recanalization was evaluated according to the thrombolysis in myocardial infarction (TIMI) criteria and the complications were observed. The modified Rankin scale ( mRS) was used to assess after 3 months. Results CDThe mean onset time and duration of coma of the 11 patients were 42 hours (range 25 to 73 hours) and 11 hours { range 2 to 24 hours) , respectively. The mean GCS score at admission was 6 ( range 3 to 7) and that was 14 (range 3 to 15 ) at discharge. (2)Nine patients performed ERT successfully (n =2, TIMI grade 2, n =7, TIMI grade 3) and 2 failed (TIMI 0). There were no complications such as bleeding. The patients regained consciousness within 9 to 27 hours. (S)The patients were followed up after 3 months, 7 had good outcome ( mRS, 0 to 2) and 2 had poor outcome( mRS, 3). ERT failed in 2 patients and they died at day 5 and day 21 after the procedures. Conclusion The patients with broadened time window on CDM who performed ERT may have a higher recanalization rate and relatively good clinical outcome. The patients with collateral circulation has good outcome.%目的 探讨临床症状与弥散加权成像不匹配(CDM),且起病时间≥24h的基底动脉急性闭塞(BAO)患者行血管内再通治疗(ERT)的可行性. 方法 共纳入11例起病时间≥24h入院时格拉斯哥昏迷量表(GCS)评分<8

  16. Bilayer Thickness Mismatch Controls Domain Size in Model Membranes

    Energy Technology Data Exchange (ETDEWEB)

    Heberle, Frederick A [ORNL; Petruzielo, Robin S [ORNL; Pan, Jianjun [ORNL; Drazba, Paul [ORNL; Kucerka, Norbert [Canadian Neutron Beam Centre and Comelius University (Slovakia); Feigenson, Gerald [Cornell University; Katsaras, John [ORNL

    2013-01-01

    The observation of lateral phase separation in lipid bilayers has received considerable attention, especially in connection to lipid raft phenomena in cells. It is widely accepted that rafts play a central role in cellular processes, notably signal transduction. While micrometer-sized domains are observed with some model membrane mixtures, rafts much smaller than 100 nm beyond the reach of optical microscopy are now thought to exist, both in vitro and in vivo. We have used small-angle neutron scattering, a probe free technique, to measure the size of nanoscopic membrane domains in unilamellar vesicles with unprecedented accuracy. These experiments were performed using a four-component model system containing fixed proportions of cholesterol and the saturated phospholipid 1,2-distearoyl-sn-glycero-3-phosphocholine (DSPC), mixed with varying amounts of the unsaturated phospholipids 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) and 1,2-dioleoylsn- glycero-3-phosphocholine (DOPC). We find that liquid domain size increases with the extent of acyl chain unsaturation (DOPC:POPC ratio). Furthermore, we find a direct correlation between domain size and the mismatch in bilayer thickness of the coexisting liquid-ordered and liquid-disordered phases, suggesting a dominant role for line tension in controlling domain size. While this result is expected from line tension theories, we provide the first experimental verification in free-floating bilayers. Importantly, we also find that changes in bilayer thickness, which accompany changes in the degree of lipid chain unsaturation, are entirely confined to the disordered phase. Together, these results suggest how the size of functional domains in homeothermic cells may be regulated through changes in lipid composition.

  17. Interictal lack of habituation of mismatch negativity in migraine.

    Science.gov (United States)

    de Tommaso, M; Guido, M; Libro, G; Losito, L; Difruscolo, O; Sardaro, M; Puca, F M

    2004-08-01

    The aim was to study mismatch negativity features and habituation during the interictal phase of migraine. In migraine patients, a strong negative correlation has been found between the initial amplitude of long latency auditory-evoked potentials and their amplitude increase during subsequent averaging. We studied 12 outpatients with a diagnosis of migraine without aura recorded in a headache-free interval and 10 gender- and age-matched healthy volunteers not suffering from any recurrent headache. The experiment consisted of two sequential blocks of 2000 stimulations, during which 1800 (90%) recordings for standard tones and 200 (10%) for target tones were selected for averaging. The latency of the N1 component was significantly increased in migraine patients in respect of controls in both the first and second repetitions; the MMN latency was increased in the second repetition. In the control group the MMN amplitude decreased on average by 3.2 +/- 1.4 microV in the second trial, whereas in migraine patients it showed a slight increase of 0.21 +/- 0.11 microV in the second repetition. The MMN latency relieved in the second trial was significantly correlated with the duration of illness in the migraine patients (Spearman correlation coefficient: 0.69; P < 0.05). The increases in N1 latency and MMN latency and amplitude, the latter correlated with duration of illness, seemed to be due to a reduced anticipatory effect of stimulus repetition in migraine patients. This suggests that such hypo-activity of automatic cortical processes, subtending the discrimination of acoustic stimuli, may be a basic abnormality in migraine, developing in the course of the disease.

  18. Effect of aripiprazole on mismatch negativity (MMN in schizophrenia.

    Directory of Open Access Journals (Sweden)

    Zhenhe Zhou

    Full Text Available BACKGROUND: Cognitive deficits are considered core symptoms of the schizophrenia. Cognitive function has been found to be a better predictor of functional outcome than symptom levels. Changed mismatch negativity (MMN reflects abnormalities of early auditory processing in schizophrenia. Up to now, no studies for the effects of aripiprazole on MMN in schizophrenia have been reported. METHODOLOGY/PRINCIPAL FINDINGS: Subjects included 26 patients with schizophrenia, and 26 controls. Psychopathology was rated in patients with the Positive and Negative Syndrome Scale (PANSS at baseline, after 4- and 8-week treatments with aripiprazole. Auditory stimuli for ERP consisted of 100 millisecond/1000 Hz standards, intermixed with 100 millisecond/1500 Hz frequency deviants and 250 millisecond/1000 Hz duration deviants. EEG was recorded at Fz. BESA 5.1.8 was used to perform data analysis. MMN waveforms were obtained by subtracting waveforms elicited by standards from waveforms elicited by frequency- or duration-deviant stimuli. Aripiprazole decreased all PANSS. Patients showed smaller mean amplitudes of frequency and duration MMN at baseline than did controls. A repeated measure ANOVA with sessions (i.e., baseline, 4- and 8-week treatments and MMN type (frequency vs. duration as within-subject factors revealed no significant MMN type or MMN type × session main effect for MMN amplitudes. Session main effect was significant. LSD tests demonstrated significant differences between MMN amplitudes at 8 weeks and those at both baseline and 4 weeks. There was significant negative correlation between changes in amplitudes of frequency and duration MMN and changes in PANSS total scores at baseline and follow-up periods. CONCLUSIONS: Aripiprazole improved the amplitudes of MMN. MMN offers objective evidence that treatment with the aripiprazole may ameliorate preattentive deficits in schizophrenia.

  19. Negative effects of a disulfide bond mismatch in anti-rabies G protein single-chain antibody variable fragment FV57.

    Science.gov (United States)

    Duan, Ye; Gu, Tiejun; Zhang, Xizhen; Jiang, Chunlai; Yuan, Ruosen; Li, Zhuang; Wang, Dandan; Chen, Xiaoxu; Wu, Chunlai; Chen, Yan; Wu, Yongge; Kong, Wei

    2014-06-01

    Rabies virus (RV) causes a fatal infectious disease requiring efficient post-exposure prophylaxis (PEP), which includes a rabies vaccine and rabies immunoglobulin (RIG). The single-chain antibody variable fragment (scFv), a small engineered antibody fragment derived from an antibody variable heavy chain and light chain, has the potential to replace the current application of RIG. In previous studies, we constructed and evaluated an anti-rabies virus G protein scFv (FV57) based on the monoclonal antibody CR57. Of the five cysteines in FV57, four are linked in intra-chain disulfide bonds (Cys-VH28/Cys-VH98 and Cys-VL16/Cys-VL84), and one is free (Cys-VL85). However, the thiol in Cys-VL85 neighboring Cys-VL84 in the CDR3 of the light chain is likely to mismatch with the thiol in Cys-VL16 during the renaturing process. In order to study effects of the mismatched disulfide bond, Cys-VL85 and Cys-VL84 of FV57 were mutated to serine to construct mutants FV57(VL85S) and FV57(VL84S). Furthermore, the disulfide bonds in the light chain of FV57, FV57(VL85S) and FV57(VL84S) were deleted by mutating Cys-VL16 to serine. All mutants were prepared and evaluated along with the original FV57. The results indicated that the mismatched disulfide bond of FV57 linking the light chain FR1 and CDR3 would confer deleterious negative effects on its activity against RV, likely due to spatial hindrance in the light chain CDR3. Moreover, avoidance of the disulfide bond mismatch provided an additional 30% protective efficacy against RV infection in the mouse RV challenge model. Thus, modifications of FV57 to eliminate the disulfide bond mismatch may provide a candidate therapeutic agent for effective PEP against rabies.

  20. Enhanced annealing of mismatched oligonucleotides using a novel melting curve assay allows efficient in vitro discrimination and restriction of a single nucleotide polymorphism

    Directory of Open Access Journals (Sweden)

    Chan Chee

    2011-08-01

    Full Text Available Abstract Background Many SNP discrimination strategies employ natural restriction endonucleases to discriminate between allelic states. However, SNPs are often not associated with a restriction site and therefore, a number of attempts have been made to generate sequence-adaptable restriction endonucleases. In this study, a simple, sequence-adaptable SNP discrimination mechanism between a 'wild-type' and 'mutant' template is demonstrated. This model differs from other artificial restriction endonuclease models as cis- rather than trans-orientated regions of single stranded DNA were generated and cleaved, and therefore, overcomes potential issues of either inefficient or non-specific binding when only a single variant is targeted. Results A series of mismatch 'bubbles' that spanned 0-5-bp surrounding a point mutation was generated and analysed for sensitivity to S1 nuclease. In this model, generation of oligonucleotide-mediated ssDNA mismatch 'bubbles' in the presence of S1 nuclease resulted in the selective degradation of the mutant template while maintaining wild-type template integrity. Increasing the size of the mismatch increased the rate of mutant sequence degradation, until a threshold above which discrimination was lost and the wild-type sequence was degraded. This level of fine discrimination was possible due to the development of a novel high-resolution melting curve assay to empirically determine changes in Tm (~5.0°C per base-pair mismatch and to optimise annealing conditions (~18.38°C below Tm of the mismatched oligonucleotide sets. Conclusions The in vitro 'cleavage bubble' model presented is sequence-adaptable as determined by the binding oligonucleotide, and hence, has the potential to be tailored to discriminate between any two or more SNPs. Furthermore, the demonstrated fluorometric assay has broad application potential, offering a rapid, sensitive and high-throughput means to determine Tm and annealing rates as an alternative

  1. Mismatch or cumulative stress : Toward an integrated hypothesis of programming effects

    NARCIS (Netherlands)

    Nederhof, Esther; Schmidt, Mathias V.

    2012-01-01

    This paper integrates the cumulative stress hypothesis with the mismatch hypothesis, taking into account individual differences in sensitivity to programming. According to the cumulative stress hypothesis, individuals are more likely to suffer from disease as adversity accumulates. According to the

  2. Role of Energy-Level Mismatches in a Multi-Pathway Complex of Photosynthesis

    CERN Document Server

    Lim, James; Lee, Changhyoup; Yoo, Seokwon; Jeong, Hyunseok; Lee, Jinhyoung

    2013-01-01

    Considering a multi-pathway structure in a light-harvesting complex of photosynthesis, we investigate the role of energy-level mismatches between antenna molecules in transferring the absorbed energy to a reaction center. We find a condition in which the antenna molecules faithfully play their roles: Their effective absorption ratios are larger than those of the receiver molecule directly coupled to the reaction center. In the absence of energy-level mismatches and dephasing noise, there arises quantum destructive interference between multiple paths that restricts the energy transfer. On the other hand, the destructive interference diminishes as asymmetrically biasing the energy-level mismatches and/or introducing quantum noise of dephasing for the antenna molecules, so that the transfer efficiency is greatly enhanced to near unity. Remarkably, the near-unity efficiency can be achieved at a wide range of asymmetric energy-level mismatches. Temporal characteristics are also optimized at the energy-level mismat...

  3. Enhancement of thermal stability in microwave applicators by mismatching and detuning

    Energy Technology Data Exchange (ETDEWEB)

    Nelson, E.M.

    1996-07-01

    Many microwave applicator systems experiencing thermal runaway can be stabilized by mismatching and/or detuning the system. The stability of the systems is discussed qualitatively and a conservative guide for adjusting microwave applicators for enhanced stability is described.

  4. Design of two-layer switching rule for stabilization of switched linear systems with mismatched switching

    Institute of Scientific and Technical Information of China (English)

    Dan MA

    2014-01-01

    A two-layer switching architecture and a two-layer switching rule for stabilization of switched linear control systems are proposed, under which the mismatched switching between switched systems and their candidate hybrid controllers can be allowed. In the low layer, a state-dependent switching rule with a dwell time constraint to exponentially stabilize switched linear systems is given;in the high layer, supervisory conditions on the mismatched switching frequency and the mismatched switching ratio are presented, under which the closed-loop switched system is still exponentially stable in case of the candidate controller switches delay with respect to the subsystems. Different from the traditional switching rule, the two-layer switching architecture and switching rule have robustness, which in some extend permit mismatched switching between switched subsystems and their candidate controllers.

  5. Simulated growth of layers on a substrate with mismatch: structural studies

    Science.gov (United States)

    Tan, S.; Ghazali, A.; Lévy, J. C. S.

    1996-12-01

    High temperature deposition of metallic materials on a (111) face of a fcc substrate, followed by a slow cooling down to a given temperature, is simulated by means of a Monte-Carlo algorithm with Lennard-Jones interatomic pair potentials. Adsorption and growth modes on the surface are studied in order to determine whether the growth is three- or two-dimensional, according to relevant parameters such as lattice mismatch and relative atomic binding energy. For a ± 10% mismatch it is found that the Stranski-Krastanov process starts early and is later healed by the appearance of bridges between islands, after a deposition of about ten monolayers. The interlayer distance undergoes oscillations as a function of the layer number. This is observed for a ± 10% mismatch as well as for a 5% mismatch.

  6. Late Permian to Triassic intraplate orogeny of the southern Tianshan and adjacent regions, NW China

    Institute of Scientific and Technical Information of China (English)

    Wei Ju; Guiting Hou

    2014-01-01

    The South Tianshan Orogen and adjacent regions of Central Asia are located in the southwestern part of the Central Asian Orogenic Belt. The formation of South Tianshan Orogen was a diachronous, scissors-like process, which took place during the Palaeozoic, and its western segment was accepted as a site of the final collision between the Tarim Craton and the North Asian continent, which occurred in the late Palaeozoic. However, the post-collisional tectonic evolution of the South Tianshan Orogen and adjacent regions remains debatable. Based on previous studies and recent geochronogical data, we suggest that the final collision between the Tarim Craton and the North Asian continent occurred during the late Carboniferous. Therefore, the Permian was a period of intracontinental environment in the southern Tianshan and adjacent regions. We propose that an earlier, small-scale intraplate orogenic stage occurred in late Permian to Triassic time, which was the first intraplate process in the South Tianshan Orogen and adjacent regions. The later large-scale and well-known Neogene to Quaternary intraplate orogeny was induced by the collision between the India subcontinent and the Eurasian plate. The paper presents a new evolutionary model for the South Tianshan Orogen and adjacent regions, which includes seven stages: (I) late Ordovicianeearly Silurian opening of the South Tianshan Ocean;(II) middle Silurianemiddle Devonian subduction of the South Tianshan Ocean beneath an active margin of the North Asian continent; (III) late Devonianelate Carboniferous closure of the South Tianshan Ocean and collision between the Kazakhstan-Yili and Tarim continental blocks;(IV) early Permian post-collisional magmatism and rifting;(V) late PermianeTriassic the first intraplate orogeny;(VI) JurassicePalaeogene tectonic stagnation and (VII) NeoceneeQuaternary intraplate orogeny.

  7. EXPRESSION MECHANISM AND CLINICAL SIGNIFICANCE OF NOB1 IN GASTRIC CANCER TISSUE AND ADJACENT NORMAL TISSUE.

    Science.gov (United States)

    Zhou, W-P; Liu, X; Yang, Y; Liu, Y-F

    2015-01-01

    This paper studies the effect and relationship of NOB1 in the development of gastric cancer, based on an analysis of NOB1expression in gastric cancer tissue and adjacent tissue. Thirty gastric cancer tissue samples taken during surgery with complete pathological data and their related adjacent normal tissue were examined in this study. NOB1 protein expression in gastric cancer tissue and adjacent normal tissue was detected by immunohistochemistry (IHC). Real-time PCR was used to detect NOB1 mRNA expression, which provided a basis on which to explore the clinical pathological characteristics for patients with gastric cancer. Results show that NOB1 protein in gastric cancer tissue and adjacent normal tissue were diffusely expressed both in the cytoplasm and nucleus. The positive expression rate in gastric cancer tissue was 73%, higher than that in adjacent normal tissue (47%). Both the reference NAPDH and NOB1 amplification are reflected in the amplification curve in standard S-shape and the unimodal solubility curve which was not altered by non-specific amplification and primer dimer. NOB1 mRNA relative expression in cancer tissue was 4.899∓1.412. NOB1 expression had no direct relationship with the patients’ age, gender, tumor differentiation or infiltration degree, lymphatic metastasis, distant metastasis nor pTNM periodization, but was directly related to the size of the tumor. All the findings in this paper suggest that NOB1 can be one of the focuses for diagnosing and treating gastric cancer and that its protein expression is likely to increase with the growth of tumor, thus playing a great role in the incidence and development of gastric cancer.

  8. Do anticodons of misacylated tRNAs preferentially mismatch codons coding for the misloaded amino acid?

    Directory of Open Access Journals (Sweden)

    Seligmann Hervé

    2010-05-01

    Full Text Available Abstract Background Accurate amino acid insertion during peptide elongation requires tRNAs loaded by cognate amino acids and that anticodons match codons. However, tRNA misloading does not necessarily cause misinsertions: misinsertion is avoided when anticodons mismatch codons coding for misloaded amino acids. Presentation of the hypothesis Occasional compensation of misacylation by codon-anticodon mismatch necessarily occurs. Putatively, occasional error compensation may be enhanced beyond the random combination of independent errors in tRNA loading and codon-anticodon interactions: tRNA misacylation might alter potentials for codon-anticodon mismatches, perhaps specifically increasing potentials for mismatching those codons coding for the misacylated non-cognate amino acid. This hypothetical phenomenon is called 'error coordination', in distinction from 'error compensation' that assumes independence between misacylation and mismatch. Testing the hypothesis Eventually, the hypothesis should be tested for each combination of amino acid misacylation and codon-anticodon mismatch, by comparing stabilities or frequencies of mismatched codon-anticodon duplexes formed by tRNAs loaded by their cognate amino acid with stabilities formed by that tRNA when misloaded with the amino acid coded by the mismatched codon. Competitive mismatching experiments between misloaded and correctly loaded tRNAs could also be useful, yet more sophisticated experiments. Implications of the hypothesis Detecting error coordination implies estimating error compensation, which also promotes protein synthesis accuracy. Hence even in the absence of evidence for error coordination, experiments would yield very useful insights into misacylation and mismatch processes. In case experiments consider post-transcriptional RNA modifications (especially at wobble positions, results on codon-anticodon mismatches would enable significant improvements and sophistications of secondary

  9. Association of common variants in mismatch repair genes and breast cancer susceptibility: a multigene study

    Directory of Open Access Journals (Sweden)

    Pina Julieta

    2009-09-01

    Full Text Available Abstract Background MMR is responsible for the repair of base-base mismatches and insertion/deletion loops. Besides this, MMR is also associated with an anti-recombination function, suppressing homologous recombination. Losses of heterozygosity and/or microsatellite instability have been detected in a large number of skin samples from breast cancer patients, suggesting a potential role of MMR in breast cancer susceptibility. Methods We carried out a hospital-based case-control study in a Caucasian Portuguese population (287 cases and 547 controls to estimate the susceptibility to non-familial breast cancer associated with some polymorphisms in mismatch repair genes (MSH3, MSH4, MSH6, MLH1, MLH3, PMS1 and MUTYH. Results Using unconditional logistic regression we found that MLH3 (L844P, G>A polymorphism GA (Leu/Pro and AA (Pro/Pro genotypes were associated with a decreased risk: OR = 0.65 (0.45-0.95 (p = 0.03 and OR = 0.62 (0.41-0.94 (p = 0.03, respectively. Analysis of two-way SNP interaction effects on breast cancer revealed two potential associations to breast cancer susceptibility: MSH3 Ala1045Thr/MSH6 Gly39Glu - AA/TC [OR = 0.43 (0.21-0.83, p = 0.01] associated with a decreased risk; and MSH4 Ala97Thr/MLH3 Leu844Pro - AG/AA [OR = 2.35 (1.23-4.49, p = 0.01], GG/AA [OR = 2.11 (1.12-3,98, p = 0.02], and GG/AG [adjusted OR = 1.88 (1.12-3.15, p = 0.02] all associated with an increased risk for breast cancer. Conclusion It is possible that some of these common variants in MMR genes contribute significantly to breast cancer susceptibility. However, further studies with a large sample size will be needed to support our results.

  10. DNA mismatch repair deficiency in sporadic colorectal cancer and Lynch Syndrome

    OpenAIRE

    Poulogiannis, George; Frayling, Ian; Arends, Mark

    2009-01-01

    Abstract DNA mismatch repair (MMR) deficiency is one of the best understood forms of genetic instability in colorectal cancer (CRC), and is characterised by the loss of function of the MMR pathway. Failure to repair replication-associated errors due to a defective MMR system allows persistence of mismatch mutations all over the genome, but especially in regions of repetitive DNA known as microsatellites, giving rise to the phenomenon of microsatellite instability (MSI). A high freq...

  11. Mismatch between the PSB and CPS due to the present vertical recombination scheme

    CERN Document Server

    Jansson, A

    1997-01-01

    The production of the nominal LHC beam will deamand optimum emittance preservation between individual machines in the injection chain. The edge effects at the entry and exit of the bending magnets used for the vertical recombination of the four PS booster rings to the level of the CPS results in a small uncompensated, and for each ring different, mismatch. We present recent measurements of the mismatch done in the PSB measurement line.

  12. Cognitive mismatches: Will they ever be a thing of the past?

    OpenAIRE

    Baxter, Gordon; Besnard, Denis

    2004-01-01

    International audience; The introduction of the glass cockpit redistributed, rather than reduced flight crews' workloads. Pilots now spend more resources managing the various systems in the cockpit. The specific problems of using cockpit automation are well documented; the more generic problem of cognitive mismatches is considered here. A taxonomy of the types of cognitive mismatches is defined before considering how to manage them. Allowing the glass cockpit to continue to evolve in the same...

  13. Influence of group—velocity mismatch on soliton switching in a nonlinear fibre coupler

    Institute of Scientific and Technical Information of China (English)

    LiHong; HuangDe-Xiu; WangDong-Ning

    2003-01-01

    In this work, the influence of group-velocity mismatch on soliton self-routing pulse switching in a nonlinear fibre coupler is discussed in detail by the use of both variational approach and numerical simulation. The results obtained show that the group-velocity mismatch leads to the relative displacement between the two orthogonal polarization modes, increase of the critical power, and reduction of the elimination-light ratio. For sub-ps pulse, the influence cannot be neglected.

  14. Influence of group-velocity mismatch on soliton switching in a nonlinear fibre coupler

    Institute of Scientific and Technical Information of China (English)

    李宏; 黄德修; 王东宁

    2003-01-01

    In this work, the influence of group-velocity mismatch on soliton self-routing pulse switching in a nonlinear fibrecoupler is discussed in detail by the use of both variational approach and numerical simulation. The results obtainedshow that the group-velocity mismatch leads to the relative displacement between the two orthogonal polarizationmodes, increase of the critical power, and reduction of the elimination-light ratio. For sub-ps pulse, the influence cannot be neglected.

  15. Impact of prosthesis-patient mismatch on survival after mitral valve replacement: a systematic review

    Institute of Scientific and Technical Information of China (English)

    ZHANG Jian-feng; WU Yi-cheng; SHEN Wei-feng; KONG Ye

    2013-01-01

    Objective To determine whether the prosthesis-patient mismatch has a deleterious impact on survival after mitral valve replacement.Data sources A comprehensive literature search of PubMed,Embase,and ScienceDirect was carried out.References and cited papers of relevant articles were also checked.Study selection All articles published after January 1980 was initially considered.Non-English and non-human studies,case reports,and reviews were excluded from the initial search.References and cited papers of relevant articles were also checked.Results A total of 8 retrospective cohort studies were identified for this review.The overall incidence of prosthesis-patient mismatch (<1.3 to <1.2 cm2/m2) after mitral valve replacement ranged from 3.7% to 85.9% (moderate prosthesis-patient mismatch (0.9 to 1.2 cm2/m2) in 37.4% to 69.5%,severe prosthesis-patient mismatch (<0.9 cm2/m2) in 8.7% to 16.4%).Four studies demonstrated an association of prosthesis-patient mismatch with reduced long-term survival,but the other four studies found no significant deleterious impact of prosthesis-patient mismatch after mitral valve replacement.No definite conclusion could be derived from these conflicting results.Conclusions Current evidence is insufficient to derive a definite conclusion whether mitral prosthesis-patient mismatch affects long-term survival because of the biases and confounding factors that interfere with late clinical outcomes.Good-quality prospective studies are warranted to evaluate the impact of mitral prosthesis-patient mismatch after mitral valve replacement in the future.

  16. Tuning quadratic nonlinear photonic crystal fibers for zero group-velocity mismatch

    DEFF Research Database (Denmark)

    Bache, Morten; Lægsgaard, Jesper; Bang, Ole

    2006-01-01

    A nonlinear index-guiding silica PCF is optimized for efficient second-harmonic generation through dispersion calculations. Zero group-velocity mismatch is possible for any pump wavelength above 780 nm. Very high conversion efficiencies and bandwidths are found.......A nonlinear index-guiding silica PCF is optimized for efficient second-harmonic generation through dispersion calculations. Zero group-velocity mismatch is possible for any pump wavelength above 780 nm. Very high conversion efficiencies and bandwidths are found....

  17. Patient-prosthesis mismatch and reduction in left ventricular mass after aortic valve replacement

    DEFF Research Database (Denmark)

    Kandler, Kristian; Møller, Christian H; Hassager, Christian;

    2013-01-01

    The presence of patient-prosthesis mismatch (PPM) after aortic valve replacement may influence patient survival. We examined the relationship between PPM and changes in left ventricular mass index at 3 months follow-up and also overall survival.......The presence of patient-prosthesis mismatch (PPM) after aortic valve replacement may influence patient survival. We examined the relationship between PPM and changes in left ventricular mass index at 3 months follow-up and also overall survival....

  18. The Impact of Public Policies on Skill Mismatch : cross-country analysis in OECD economies

    OpenAIRE

    Mauriès, Arthur-Alexandre

    2016-01-01

    Governments aim at reducing skill mismatch because of the adverse effects that it can trigger at the individual and firm level as well as at the country level. Skill mismatch has been defined as a persistent phenomenon with long lasting cross-country differences (Mavromaras et al., 2013). This phenomenon could thus be explained by equivalent cross-country differences in national public policies. The purpose of this thesis is to test the impact of public policies on the probability of being sk...

  19. Migration of PCBs from Sealants to Adjacent Material

    DEFF Research Database (Denmark)

    Andersen, Helle Vibeke; Gunnarsen, Lars Bo; Kampmann, Kristoffer

    2015-01-01

    adjacent to outdoor PCB-containing sealants. The samples were submitted to the laboratory for normal commercial assessment of PCB content in relation to the handling of waste from renovation works in Denmark. The results showed that the PBC concentration in the sealant not necessarily relate...

  20. Flow and edge scour in current adjacent to stone covers

    DEFF Research Database (Denmark)

    Petersen, Thor U.; Sumer, B. Mutlu; Bøgelund, Jon;

    2015-01-01

    This paper presents the results of an experimental investigation on edge scour adjacent to a stone cover laid on a sandy bed. The three-dimensional flow over the edge of the stone layer has been investigated by the use of particle image velocimetry. The flow measurements show a significant amount...

  1. Adjacent segment degeneration: observations in a goat spinal fusion study

    NARCIS (Netherlands)

    R.J.W. Hoogendoorn; M.N. Helder; P.I.J.M. Wuisman; R.A. Bank; V. Everts; T.H. Smit

    2008-01-01

    Study Design. The adjacent discs of 13 goats, originally used in a lumbar spinal fusion model study, were analyzed for symptoms of intervertebral disc degeneration by means of magnetic resonance imaging (MRI), macroscopy, and histology. These goats were followed for 6 months and the results were com

  2. Experimental Tape Casting of Adjacently Graded Materials for Magnetic Refrigeration

    DEFF Research Database (Denmark)

    Bulatova, Regina

    graded thin films. The motivation to create such adjacently segmented structures stemmed from a search of material and a materials design alternative to the expensive rare earth element gadolinium which is widely used as a magnetic regenerator in the emerging magnetic refrigeration technology...

  3. Measurement Methods to Determine Air Leakage Between Adjacent Zones

    Energy Technology Data Exchange (ETDEWEB)

    Hult, Erin L. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Dickerhoff, Darryl J. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Price, Phillip N. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

    2012-09-01

    Air leakage between adjacent zones of a building can lead to indoor air quality and energy efficiency concerns, however there is no existing standard for measuring inter-zonal leakage. In this study, synthesized data and field measurements are analyzed in order to explore the uncertainty associated with different methods for collecting and analyzing fan pressurization measurements to calculate interzone leakage.

  4. Mismatch repair genes of Streptococcus pneumoniae: HexA confers a mutator phenotype in Escherichia coli by negative complementation.

    Science.gov (United States)

    Prudhomme, M; Méjean, V; Martin, B; Claverys, J P

    1991-11-01

    DNA repair systems able to correct base pair mismatches within newly replicated DNA or within heteroduplex molecules produced during recombination are widespread among living organisms. Evidence that such generalized mismatch repair systems evolved from a common ancestor is particularly strong for two of them, the Hex system of the gram-positive Streptococcus pneumoniae and the Mut system of the gram-negative Escherichia coli and Salmonella typhimurium. The homology existing between HexA and MutS and between HexB and MutL prompted us to investigate the effect of expressing hex genes in E. coli. Complementation of mutS or mutL mutations, which confer a mutator phenotype, was assayed by introducing on a multicopy plasmid the hexA and hexB genes, under the control of an inducible promoter, either individually or together in E. coli strains. No decrease in mutation rate was conferred by either hexA or hexB gene expression. However, a negative complementation effect was observed in wild-type E. coli cells: expression of hexA resulted in a typical Mut- mutator phenotype. hexB gene expression did not increase the mutation rate either individually or in conjunction with hexA. Since expression of hexA did not affect the mutation rate in mutS mutant cells and the hexA-induced mutator effect was recA independent, it is concluded that this effect results from inhibition of the Mut system. We suggest that HexA, like its homolog MutS, binds to mismatches resulting from replication errors, but in doing so it protects them from repair by the Mut system. In agreement with this hypothesis, an increase in mutS gene copy number abolished the hexA-induced mutator phenotype. HexA protein could prevent repair either by being unable to interact with Mut proteins or by producing nonfunctional repair complexes.

  5. Profiling single-guide RNA specificity reveals a mismatch sensitive core sequence

    Science.gov (United States)

    Zheng, Ting; Hou, Yingzi; Zhang, Pingjing; Zhang, Zhenxi; Xu, Ying; Zhang, Letian; Niu, Leilei; Yang, Yi; Liang, Da; Yi, Fan; Peng, Wei; Feng, Wenjian; Yang, Ying; Chen, Jianxin; Zhu, York Yuanyuan; Zhang, Li-He; Du, Quan

    2017-01-01

    Targeting specificity is an essential issue in the development of CRISPR-Cas technology. Using a luciferase activation assay, off-target cleavage activity of sgRNA was systematically investigated on single nucleotide-mismatched targets. In addition to confirming that PAM-proximal mismatches are less tolerated than PAM-distal mismatches, our study further identified a “core” sequence that is highly sensitive to target-mismatch. This sequence is of 4-nucleotide long, located at +4 to +7 position upstream of PAM, and positioned in a steric restriction region when assembled into Cas9 endonuclease. Our study also found that, single or multiple target mismatches at this region abolished off-target cleavage mediated by active sgRNAs, thus proposing a principle for gene-specific sgRNA design. Characterization of a mismatch sensitive “core” sequence not only enhances our understanding of how this elegant system functions, but also facilitates our efforts to improve targeting specificity of a sgRNA. PMID:28098181

  6. Detection of cognitive impairment in patients with obstructive sleep apnea hypopnea syndrome using mismatch negativity

    Institute of Scientific and Technical Information of China (English)

    Xiaohui Wen; Ningyu Wang; Jinfeng Liu; Zhanfeng Yan; Zhonghai Xin

    2012-01-01

    In this experiment, 97 patients with obstructive sleep apnea hypopnea syndrome were divided into three groups (mild, moderate, severe) according to minimum oxygen saturation, and 35 healthy subjects were examined as controls. Cognitive function was determined using the mismatch negativity paradigm and the Montreal Cognitive Assessment. The results revealed that as the disease worsened, the mismatch negativity latency was gradually extended, and the amplitude gradually declined in patients with obstructive sleep apnea hypopnea syndrome. Importantly, mismatch negativity latency in severe patients with a persistent time of minimum oxygen saturation 60 seconds. Correlation analysis revealed a negative correlation between minimum oxygen saturation latency and Montreal Cognitive Assessment scores. These findings indicate that intermittent night-time hypoxemia affects mismatch negativity waveforms and Montreal Cognitive Assessment scores. As indicators for detecting the cognitive functional status of obstructive sleep apnea hypopnea syndrome patients, the sensitivity of mismatch negativity is 82.93%, the specificity is 73.33%, the accuracy rate is 81.52%, the positive predictive value is 85.00%, the negative predictive value is 70.21%, the positive likelihood ratio is 3, and the negative likelihood ratio is 0.23. These results indicate that mismatch negativity can be used as an effective tool for diagnosis of cognitive dysfunction in obstructive sleep apnea hypopnea syndrome patients.

  7. Mismatch repair regulates homologous recombination, but has little influence on antigenic variation, in Trypanosoma brucei.

    Science.gov (United States)

    Bell, Joanna S; McCulloch, Richard

    2003-11-14

    Antigenic variation is critical in the life of the African trypanosome, as it allows the parasite to survive in the face of host immunity and enhance its transmission to other hosts. Much of trypanosome antigenic variation uses homologous recombination of variant surface glycoprotein (VSG)-encoding genes into specialized transcription sites, but little is known about the processes that regulate it. Here we describe the effects on VSG switching when two central mismatch repair genes, MSH2 and MLH1, are mutated. We show that disruption of the parasite mismatch repair system causes an increased frequency of homologous recombination, both between perfectly matched DNA molecules and between DNA molecules with divergent sequences. Mismatch repair therefore provides an important regulatory role in homologous recombination in this ancient eukaryote. Despite this, the mismatch repair system has no detectable role in regulating antigenic variation, meaning that VSG switching is either immune to mismatch selection or that mismatch repair acts in a subtle manner, undetectable by current assays.

  8. Detecting mismatches of bird migration stopover and tree phenology in response to changing climate

    Science.gov (United States)

    Kellermann, Jherime L.; Van Riper, Charles

    2015-01-01

    Migratory birds exploit seasonal variation in resources across latitudes, timing migration to coincide with the phenology of food at stopover sites. Differential responses to climate in phenology across trophic levels can result in phenological mismatch; however, detecting mismatch is sensitive to methodology. We examined patterns of migrant abundance and tree flowering, phenological mismatch, and the influence of climate during spring migration from 2009 to 2011 across five habitat types of the Madrean Sky Islands in southeastern Arizona, USA. We used two metrics to assess phenological mismatch: synchrony and overlap. We also examined whether phenological overlap declined with increasing difference in mean event date of phenophases. Migrant abundance and tree flowering generally increased with minimum spring temperature but depended on annual climate by habitat interactions. Migrant abundance was lowest and flowering was highest under cold, snowy conditions in high elevation montane conifer habitat while bird abundance was greatest and flowering was lowest in low elevation riparian habitat under the driest conditions. Phenological synchrony and overlap were unique and complementary metrics and should both be used when assessing mismatch. Overlap declined due to asynchronous phenologies but also due to reduced migrant abundance or flowering when synchrony was actually maintained. Overlap declined with increasing difference in event date and this trend was strongest in riparian areas. Montane habitat specialists may be at greatest risk of mismatch while riparian habitat could provide refugia during dry years for phenotypically plastic species. Interannual climate patterns that we observed match climate change projections for the arid southwest, altering stopover habitat condition.

  9. Numerical simulation of CTE mismatch and thermal-structural stresses in the design of interconnects

    Science.gov (United States)

    Peter, Geoffrey John M.

    With the ever-increasing chip complexity, interconnects have to be designed to meet the new challenges. Advances in optical lithography have made chip feature sizes available today at 70 nm dimensions. With advances in Extreme Ultraviolet Lithography, X-ray Lithography, and Ion Projection Lithography it is expected that the line width will further decrease to 20 nm or less. With the decrease in feature size, the number of active devices on the chip increases. With higher levels of circuit integration, the challenge is to dissipate the increased heat flux from the chip surface area. Thermal management considerations include coefficient of thermal expansion (CTE) matching to prevent failure between the chip and the board. This in turn calls for improved system performance and reliability of the electronic structural systems. Experience has shown that in most electronic systems, failures are mostly due to CTE mismatch between the chip, board, and the solder joint (solder interconnect). The resulting high thermal-structural stress and strain due to CTE mismatch produces cracks in the solder joints with eventual failure of the electronic component. In order to reduce the thermal stress between the chip, board, and the solder joint, this dissertation examines the effect of inserting wire bundle (wire interconnect) between the chip and the board. The flexibility of the wires or fibers would reduce the stress at the rigid joints. Numerical simulations of two, and three-dimensional models of the solder and wire interconnects are examined. The numerical simulation is linear in nature and is based on linear isotropic material properties. The effect of different wire material properties is examined. The effect of varying the wire diameter is studied by changing the wire diameter. A major cause of electronic equipment failure is due to fatigue failure caused by thermal cycling, and vibrations. A two-dimensional modal and harmonic analysis was simulated for the wire interconnect

  10. 基于稳定同位素方法的东海北部及其邻近水域主要游泳动物营养结构变化%Variation in trophic structure of nekton organisms from the northern East China Sea and adjacent waters based on stable isotope values

    Institute of Scientific and Technical Information of China (English)

    纪炜炜; 李圣法; 陈雪忠; 阮雯; 周进

    2015-01-01

    依据2009年夏季和2010年春季东海北部及其邻近水域的底拖网渔业资源调查样品,利用稳定同位素生态位的方法分析该海域内主要游泳动物营养结构的季节变化,并根据δ13 C-δ15 N 的二维坐标计算了6个营养结构的量化指标。结果表明,东海北部及其邻近水域主要游泳动物的δ13 C值存在显著的季节差异(P<0.05),δ15N值无显著差异(P>0.05);稳定同位素的量化指标结果表明,游泳动物群落的营养结构存在季节差异,与2009年夏季相比,2010年春季的δ15 N比值范围(NR)、δ13 C比值范围(CR)、面积(TA)、平均离心距离(CD)均有所升高,而最邻近距离平均值(NND)、最邻近距离标准差(SDNND)值相对持平或略有下降。本研究结果表明,东海北部及其邻近水域主要游泳动物营养结构的季节差异与群落内食源多样性水平和营养冗余程度的变化密切相关。%Based on materials collected from large-scale surveys in the northern East China Sea and adjacent waters in the summer of 2009 and the spring of 2010 (29°-34°N,122°-127°E),the paper studied seasonal variations of the trophic structure of nekton organisms through analysis of stable isotopic contents.The isotopic niche defined as a position in the δ13 C-δ15 N planar was applied,and six quantitative metrics (ratio range ofδ15 N,NR;ratio range ofδ13 C,CR;area,TA;average distance of centroid,CD;the minimum mean,NND;the minimum standard deviation,SDNND)based on stable isotopic were calculated to show the trophic structure characteristics.The results showed that there were significant differences between δ13 C values of samples collected in two seasons,while no significant difference between δ15 N values was found.Trophic structure of nektons differed remarkably in the two sampling seasons inferred from six quantitative metrics. NR,CR,TA and CD were much higher in the spring of 2010

  11. Stepwise deletions of polyA sequences in mismatch repair-deficient colorectal cancers.

    Science.gov (United States)

    Blake, C; Tsao, J L; Wu, A; Shibata, D

    2001-05-01

    PolyA simple repeat sequence deletions are common in tumors with microsatellite instability (MSI+). Such deletions occur one base at a time in DNA mismatch repair (MMR)-deficient yeast suggesting larger deletions in human MSI+ tumors represent multiple sequential stepwise losses. Sum total deletions in four polyA repeats were variable (between -17 to -45 bp) in 20 sporadic MSI+ colorectal cancers. Progressive but less extensive total deletions (maximum of -12 bp) occurred in similar polyA sequences in MMR-deficient mice (mlh1-/-) up to 478 days old. PolyA repeat lengths were relatively stable but already shortened in the MMR-deficient cell line HCT116. A transgene with 26 A's transfected into HCT116 shortened an average of 3.8 bases pairs after 469 days in culture, less than average deletions of BAT25 (-5.3) or BAT26 (-9.0) in MSI+ cancers. These findings further suggest that extensive polyA deletions common in MSI+ tumors likely reflect multiple stepwise smaller deletions that accumulate more than hundreds of divisions after loss of MMR.

  12. Crucial problems on security assessment of a building site adjacent to an excavated high slope

    Institute of Scientific and Technical Information of China (English)

    文海家; ZHANG; Jialan; 等

    2002-01-01

    The subject of this work is the assessment on the stability of an excavated high slope in order to insure the security of the building site adjacent to the slope,which is frequently encountered in town construction in mountainous areas due to terrain limit.On the base of some typical engineering cases in Chongqing,several crucial problems on security assessment of building site adjacent to an excavated high slope,including the natural geological conditions and man-destroyed degree,engineering environment,potential failure pattern of the high slope,calculation parameters and analysis methods,are roundly discussed.It is demonstrated that the conclusion of security assessment can be determined according to the aspects above-mentioned,and the security assessment is one of the fundamental data to insure the safety of the related construction,site and buildings.

  13. Teaching Fillers, Discourse Markers and Adjacency Pairs to College Stu-dents

    Institute of Scientific and Technical Information of China (English)

    王蓓

    2015-01-01

    Speaking has long been underestimated in College English education, compared with reading , writing and listening. Even In universities where spoken courses are provided, verbal filler and discourse markers which vastly exist in native speaker ’s corpora are rarely found in these prescribed spoken course books. For the teaching of adjacency pairs, which are always one of the focuses in teaching conversation skills in College English spoken program ,students are required to make up a new one based on the given scenario after they have memorized model dialogues. Unfortunately, students always experience pragmatic difficulty when they interact with people in the real world if they are guided by this approach. This article suggests a triangle which is com⁃posed of exposure, instruction and practice to teach verbal filler, discourse markers and adjacency pairs. This triangle combines both direct approach and indirect approach. Furthermore, in spoken program , English teachers can adapt spoken course books to integrate features of authentic conversations.

  14. A sea temperature data assimilation system for the China Seas and adjacent areas

    Institute of Scientific and Technical Information of China (English)

    YOU Xiaobao; ZHOU Guangqing; ZHU Jiang; LI Rongfeng

    2003-01-01

    A sea temperature data assimilation system for the China Seas and adjacent areas is developed based on a nested regional ocean circulation model and variational optimal interpolation assimilation method. A 12-year assimilation experiment is performed by using the observational temperature profiles from World Ocean Database 1998 (WOD98) and ECMWF reanalysis surface wind stress. Experimental results indicate that the variational scheme shows good skill in assimilating the observed sea temperature into a regional ocean circulation model. Compared with simulation alone, the sea temperature data assimilation significantly improves the performance of a regional ocean model and obtains comprehensive description of the circulations in the China Seas and adjacent areas. Assimilation results, such as the strength and flowing axis of the Kuroshio, Yellow Sea Cold Water Mass and its corresponding horizontal circulation in summer and dipole eddies in the South China Sea in the late summer/early autumn and the eastward jet between them, are well consistent with the observed evidences.

  15. Steganography in 3D Geometries and Images by Adjacent Bin Mapping

    Directory of Open Access Journals (Sweden)

    Wu Hao-Tian

    2009-01-01

    Full Text Available A steganographic method called adjacent bin mapping (ABM is presented. Firstly, it is applied to 3D geometries by mapping the coordinates within two adjacent bins for data embedding. When applied to digital images, it becomes a kind of LSB hiding, namely the algorithm. In order to prevent the detection using a metric named histogram tail, the hiding is performed in a pseudorandom order. Then we show that the steganalytic algorithms based on histogram characteristic function (HCF can be prevented by implementing the algorithm on subsets of pixels having the same neighbor values. The experimental results show that important high-order statistics of the cover image are preserved in this way while little distortion is introduced to 3D geometric models with an appropriate bin size.

  16. Steganography in 3D Geometries and Images by Adjacent Bin Mapping

    Directory of Open Access Journals (Sweden)

    Hao-Tian Wu

    2009-01-01

    Full Text Available A steganographic method called adjacent bin mapping (ABM is presented. Firstly, it is applied to 3D geometries by mapping the coordinates within two adjacent bins for data embedding. When applied to digital images, it becomes a kind of LSB hiding, namely the LSB+ algorithm. In order to prevent the detection using a metric named histogram tail, the hiding is performed in a pseudorandom order. Then we show that the steganalytic algorithms based on histogram characteristic function (HCF can be prevented by implementing the LSB+ algorithm on subsets of pixels having the same neighbor values. The experimental results show that important high-order statistics of the cover image are preserved in this way while little distortion is introduced to 3D geometric models with an appropriate bin size.

  17. Mechanical analysis about the influence of tunnel excavation on vertical effect of adjacent bridge pile

    Science.gov (United States)

    Tian, Xiaoyan

    2017-08-01

    Tunnel excavation will bring additional deformation and internal force of adjacent bridge piles, if the deformation is large, it will threat the upper structure safety of the bridge. According to the complexity of the existing three - dimensional numerical simulation modeling and the time - consuming calculation, a two - stage analysis method of tunnel excavation based on Winkler foundation model was proposed. Firstly, Loganathan and Polous solutions were used to obtain the vertical displacement of the soil free field at the pile position when tunnel excavated, and the corresponding polynomial fitting displacement curve was taken. Secondly, the differential equation was established by means of the equilibrium condition of micro - element physical force and considering the pile group effect. Then, through the logical derivation, the calculation expressions of the tunnel excavation on the effect of the adjacent bridge pile (settlement, axial force and friction resistance) were obtained. Finally, based on the background of the tunnel project of Yanxing Door Station ∼ Xianning Road Station in Xi’an Metro Line 3, the feasibility and applicability of the proposed method were proved by comparing the calculated values with the numerical simulation values. It provides theoretical guidance for the effective analysis about the influence of tunnel excavation on the adjacent pile foundation effect.

  18. Improvement parameters in dynamic compaction adjacent to the slopes

    Directory of Open Access Journals (Sweden)

    Elham Ghanbari

    2015-04-01

    Full Text Available Dynamic compaction is a cost-effective method commonly used for improvement of sandy soils. A number of researchers have investigated experimentally and numerically the improvement parameters of soils using dynamic compaction, such as crater depth, improvement depth, and radial improvement, however, these parameters are not studied for improvement adjacent to the slopes or trenches. In this research, four different slopes with different inclinations are modeled numerically using the finite element code ABAQUS, and impact loads of dynamic compaction are applied. The static factors of safety are kept similar for all trenches and determined numerically by application of gravity loads to the slope using strength reduction method (SRM. The analysis focuses on crater depth and improvement region which are compared to the state of flat ground. It can be observed that compacted area adjacent to the slopes is narrower and slightly away from the slope compared to the flat state. Moreover, crater depth increases with increase in slope inclination.

  19. Resonance-like tunneling across a barrier with adjacent wells

    Indian Academy of Sciences (India)

    S Mahadevan; P Prema; S K Agarwalla; B Sahu; C S Shastry

    2006-09-01

    We examine the behavior of transmission coefficient across the rectangular barrier when attractive potential well is present on one or both sides and also the same is studied for a smoother barrier with smooth adjacent wells having Woods–Saxon shape. We find that presence of well with suitable width and depth can substantially alter at energies below the barrier height leading to resonant-like structures. In a sense, this work is complementary to the resonant tunneling of particles across two rectangular barriers, which is being studied in detail in recent years with possible applications in mind. We interpret our results as due to resonant-like positive energy states generated by the adjacent wells. We describe in detail the possible potential application of these results in electronic devices using n-type oxygen-doped gallium arsenide and silicon dioxide. It is envisaged that these results will have applications in the design of tunneling devices.

  20. Regional Fault Systems of Qaidam Basin and Adjacent Orogenic Belts

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    The purpose of this paper is to analyze the regional fault systems of Qaidam basin and adjacent orogenic belts. Field investigation and seismic interpretation indicate that five regional fault systems occurred in the Qaidam and adjacent mountain belts, controlling the development and evolution of the Qaidam basin. These fault systems are: (1)north Qaidam-Qilian Mountain fault system; (2) south Qaidam-East Kunlun Mountain fault system; (3)Altun strike-slip fault system; (4)Elashan strike-slip fault system, and (5) Gansen-Xiaochaidan fault system. It is indicated that the fault systems controlled the orientation of the Qaidam basin, the formation and distribution of secondary faults within the basin,the migration of depocenters and the distribution of hydrocarbon accumulation belt.

  1. New adjacent Bis-tetrahydrofuran Annonaceous acetogenins from Annona muricata.

    Science.gov (United States)

    Chang, Fang-Rong; Liaw, Chih-Chuang; Lin, Chih-Yuan; Chou, Chi-Jung; Chiu, Hui-Fen; Wu, Yang-Chang

    2003-03-01

    Bioactivity-guided fractionation led to the isolation of two new Annonaceous acetogenins, annocatacin A ( 1). and annocatacin B ( 2). from the seeds and the leaves, respectively, of Annona muricata. Compounds 1 and 2 are the first examples where the adjacent bis-tetrahydrofuran ring system is located at C-15. The new structures were elucidated and characterized by spectral and chemical methods. Both Annonaceous acetogenins 1 and 2 showed significant in vitro cytotoxicity toward the human hepatoma cell lines, Hep G2 and 2,2,15, and were compared with the known adjacent bis-tetrahydrofuran acetogenins, neoannonin ( 3). desacetyluvaricin ( 4). bullatacin ( 5). asimicin ( 6). annoglaucin ( 7). squamocin ( 8). and rollimusin ( 9).

  2. Improvement parameters in dynamic compaction adjacent to the slopes

    Institute of Scientific and Technical Information of China (English)

    Elham Ghanbari; Amir Hamidi

    2015-01-01

    Dynamic compaction is a cost-effective method commonly used for improvement of sandy soils. A number of researchers have investigated experimentally and numerically the improvement parameters of soils using dynamic compaction, such as crater depth, improvement depth, and radial improvement, however, these parameters are not studied for improvement adjacent to the slopes or trenches. In this research, four different slopes with different inclinations are modeled numerically using the finite element code ABAQUS, and impact loads of dynamic compaction are applied. The static factors of safety are kept similar for all trenches and determined numerically by application of gravity loads to the slope using strength reduction method (SRM). The analysis focuses on crater depth and improvement region which are compared to the state of flat ground. It can be observed that compacted area adjacent to the slopes is narrower and slightly away from the slope compared to the flat state. Moreover, crater depth increases with increase in slope inclination.

  3. Adjacent segment disease in degenerative pathologies with posterior instrumentation

    OpenAIRE

    Ana Guadalupe Ramírez Olvera; Manuel Villarreal Arroyo; Luis Mario Hinojosa Martínez; Enrique Méndez Pérez; Luis Romeo Ramos Hinojosa

    2015-01-01

    OBJECTIVE: To establish the real incidence of adjacent segment disease after fusion, and to identify the levels and predisposing factors for the pathology, as well as the functional results. METHODS: a retrospective case series study with level of evidence IIB, in a sample of 179 patients diagnosed with stenosis of the lumbar spine, spondylolisthesis and degenerative scoliosis, submitted to surgery in the period 2005 to December 2013, with posterior instrumentation and posterolateral fusion, ...

  4. Acyclic Edge Coloring of Planar Graphs without Adjacent Triangles

    Institute of Scientific and Technical Information of China (English)

    Dezheng XIE; Yanqing WU

    2012-01-01

    An acyclic edge coloring of a graph G is a proper edge coloring such that there are no bichromatic cycles.The acyclic edge chromatic number of a graph G is the minimum number k such that there exists an acyclic edge coloring using k colors and is denoted by x'a(G).In this paper we prove that x'a(G)≤ Δ(G)+ 5 for planar graphs G without adjacent triangles.

  5. Processing multiple non-adjacent dependencies: evidence from sequence learning.

    Science.gov (United States)

    de Vries, Meinou H; Petersson, Karl Magnus; Geukes, Sebastian; Zwitserlood, Pienie; Christiansen, Morten H

    2012-07-19

    Processing non-adjacent dependencies is considered to be one of the hallmarks of human language. Assuming that sequence-learning tasks provide a useful way to tap natural-language-processing mechanisms, we cross-modally combined serial reaction time and artificial-grammar learning paradigms to investigate the processing of multiple nested (A(1)A(2)A(3)B(3)B(2)B(1)) and crossed dependencies (A(1)A(2)A(3)B(1)B(2)B(3)), containing either three or two dependencies. Both reaction times and prediction errors highlighted problems with processing the middle dependency in nested structures (A(1)A(2)A(3)B(3)_B(1)), reminiscent of the 'missing-verb effect' observed in English and French, but not with crossed structures (A(1)A(2)A(3)B(1)_B(3)). Prior linguistic experience did not play a major role: native speakers of German and Dutch-which permit nested and crossed dependencies, respectively-showed a similar pattern of results for sequences with three dependencies. As for sequences with two dependencies, reaction times and prediction errors were similar for both nested and crossed dependencies. The results suggest that constraints on the processing of multiple non-adjacent dependencies are determined by the specific ordering of the non-adjacent dependencies (i.e. nested or crossed), as well as the number of non-adjacent dependencies to be resolved (i.e. two or three). Furthermore, these constraints may not be specific to language but instead derive from limitations on structured sequence learning.

  6. A simple and rapid quantitative method of detection of the common achondroplasia mutation: Analysis in mismatch repair deficient cells

    Directory of Open Access Journals (Sweden)

    Grewal Raji

    2004-01-01

    Full Text Available Achondroplasia is the most common form of dwarfism and has an incidence of approximately 1/7,500. In more than 97% of cases, it is caused by a recurrent point mutation, a G to A substitution at nucleotide position 1138 (G1138A of the fibroblast growth factor receptor 3 gene. Although this is an autosomal dominant condition, more than 90% of all mutations occur sporadically making this one of the most mutagenic sites in the human genome. The reasons for the high spontaneous G1138A mutation rate are not known. This investigation was performed by developing a simple and rapid semi-quantitative allele specific PCR based assay capable of reliably detecting more than 25 mutant G1138A copies in a pool of 300,000 wild type molecules. Using this assay, the G1138A mutation frequency was measured in cell lines deficient in mismatch repair (LoVo, SW48 and comparing it with controls. No differences were found in the frequency of this point mutation between the mismatch repair deficient and wild type cell lines.

  7. Optical signature of multicellular tumor spheroid using index-mismatch-induced spherical aberrations

    Science.gov (United States)

    Le Corre, G.; Weiss, P.; Ducommun, B.; Lorenzo, C.

    2014-02-01

    The development of new cancer treatments and the early prediction of their therapeutic potential are often made difficult by the lack of predictive pharmacological models. The 3D multicellular tumor spheroid (MCTS) model offers a level of complexity that recapitulates the three-dimensional organization of a tumor and appears to be fairly predictive of therapeutic efficiency. The use of spheroids in large-scale automated screening was recently reported to link the power of a high throughput analysis to the predictability of a 3D cell model. The spheroid has a radial symmetry; this simple geometry allows establishing a direct correlation between structure and function. The outmost layers of MCTS are composed of proliferating cells and form structurally uniform domain with an approximate thickness of 100 microns. The innermost layers are composed of quiescent cells. Finally, cells in the center of the spheroid can form a necrotic core. This latest region is structurally heterogeneous and is poorly characterized. These features make the spheroid a model of choice and a paradigm to study the optical properties of various epithelial tissues. In this study, we used an in-vitro optical technique for label-free characterization of multicellular systems based on the index- mismatch induced spherical aberrations. We achieve to monitor and characterize the optical properties of MCTS. This new and original approach might be of major interest for the development of innovative screening strategies dedicated to the identification of anticancer drugs.

  8. Differentiation of schizophrenia patients from healthy subjects by mismatch negativity and neuropsychological tests.

    Directory of Open Access Journals (Sweden)

    Yi-Ting Lin

    Full Text Available BACKGROUND: Schizophrenia is a heterogeneous disorder with diverse presentations. The current and the proposed DSM-V diagnostic system remains phenomenologically based, despite the fact that several neurobiological and neuropsychological markers have been identified. A multivariate approach has better diagnostic utility than a single marker method. In this study, the mismatch negativity (MMN deficit of schizophrenia was first replicated in a Han Chinese population, and then the MMN was combined with several neuropsychological measurements to differentiate schizophrenia patients from healthy subjects. METHODOLOGY/PRINCIPAL FINDINGS: 120 schizophrenia patients and 76 healthy controls were recruited. Each subject received examinations for duration MMN, Continuous Performance Test, Wisconsin Card Sorting Test, and Wechsler Adult Intelligence Scale Third Edition (WAIS-III. The MMN was compared between cases and controls, and important covariates were investigated. Schizophrenia patients had significantly reduced MMN amplitudes, and MMN decreased with increasing age in both patient and control groups. None of the neuropsychological indices correlated with MMN. Predictive multivariate logistic regression models using the MMN and neuropsychological measurements as predictors were developed. Four predictors, including MMN at electrode FCz and three scores from the WAIS-III (Arithmetic, Block Design, and Performance IQ were retained in the final predictive model. The model performed well in differentiating patients from healthy subjects (percentage of concordant pairs: 90.5%. CONCLUSIONS/SIGNIFICANCE: MMN deficits were found in Han Chinese schizophrenia patients. The multivariate approach combining biomarkers from different modalities such as electrophysiology and neuropsychology had a better diagnostic utility.

  9. Modulation of microRNA processing by mismatch repair protein MutLα

    Institute of Scientific and Technical Information of China (English)

    Guogen Mao; Sanghee Lee; Janice Ortega; Liya Gu; Guo-Min Li

    2012-01-01

    MicroRNAs (miRNAs) are critical post-transcriptional regulators and are derived from hairpnn-shaped primary transcripts via a series of processing steps.However,how the production of individual miRNAs is regulated remains largely unknown.Similarly,loss or overexpression of the key mismatch repair protein MutLα (MLH1-PMS2 heterodimer) leads to genome instability and tumorigenesis,but the mechanisms controlling MutLαt expression are unknown.Here we demonstrate in vitro and in vivo that MLH1 and miR-422a participate in a feedback loop that regulates the level of both molecules.Using a defined in-vitro miRNA processing system,we show that MutLαt stimulates the conversion of pri-miR-422a to pre-miR-422a,as well as the processing of other miRNAs tested,implicating MutLα as a general stimulating factor for miRNA biogenesis.This newly identified MutLαα function requires its ATPase and pri-miRNA binding activities.In contrast,miR-422a downregulates MutLα levels by suppressing MLH1 expression through base pairing with the MLH1 3'-untranslated region.A model depicting this feedback mechanism is discussed.

  10. Mutation screening of mismatch repair gene Mlh3 in familial esophageal cancer

    Institute of Scientific and Technical Information of China (English)

    Hong-Xu Liu; Yu Li; Xue-Dong Jiang; Hong-Nian Yin; Lin Zhang; Yu Wang; Jun Yang

    2006-01-01

    AIM: To shed light on the possible role of mismatch repair gene Mlh3 in familial esophageal cancer (FEC).METHODS: A total of 66 members from 10 families suggestive of a genetic predisposition to hereditary esophageal cancer were screened for germline mutations in Mlh3 with denaturing high performance liquid chromatography (DHPLC), a newly developed method of comparative sequencing based on heteroduplex detection. For all samples exhibiting abnormal DHPLC profiles,sequence changes were evaluated by cycle sequencing.For any mutation in family members, we conducted a segregation study to compare its prevalence in sporadic esophageal cancer patients and normal controls.RESULTS: Exons of Mlh3 in all samples were successfully examined. Overall, 4 missense mutations and 3 polymorphisms were identified in 4 families. Mlh3 missense mutations in families 9 and 10 might be pathogenic, but had a reduced penetrance. While in families 1 and 7,there was no sufficient evidence supporting the monogenic explanations of esophageal cancers in families.The mutations were found in 33% of high-risk families and 50% of low-risk families.CONCLUSION: Mlh3 is a high risk gene with a reduced penetrance in some families. However, it acts as a low risk gene for esophageal cancer in most families. Mutations of Mlh3 may work together with other genes in an accumulated manner and result in an increased risk of esophageal tumor. DHPLC is a robust and sensitive technique for screening gene mutations.

  11. Lattice mismatch induced curved configurations of hybrid boron nitride-carbon nanotubes

    Science.gov (United States)

    Zhang, Jin

    2016-10-01

    A unique curved configuration is observed in freestanding hybrid boron nitride-carbon nanotubes (BN-CNTs) based on molecular dynamics simulations, which, in previous studies, was tacitly assumed as a straight configuration. The physical fundamentals of this phenomenon are explored by using the continuum mechanics theory, where the curved configuration of BN-CNTs is found to be induced by the bending effect due to the lattice mismatch between the C domain and the BN domain. In addition, our results show that the curvature of the curved BN-CNTs is determined by their radius and composition. The curvature of BN-CNTs decreases with growing radius of BN-CNTs and becomes ignorable when their radius is relatively large. A non-monotonic relationship is detected between the curvature and the composition of BN-CNTs. Specifically, the curvature of BN-CNTs increases with growing BN concentration when the molar fraction of BN atoms is smaller than a critical value 0.52, but decreases with growing BN concentration when the molar fraction of BN atoms is larger than this critical value.

  12. Myocardial perfusion/metabolism mismatch and ventricular arrhythmias in the chronic post infarction state

    Energy Technology Data Exchange (ETDEWEB)

    Krause, B.J.; Poeppel, T.D.; Vosberg, H.; Mueller, H.W. [Dept. of Nuclear Medicine, Heinrich Heine Univ., Duesseldorf (Germany); Reinhardt, M. [Praxis fuer Radiologie und Nuklearmedizin, Dorsten (Germany); Vester, E.G. [Dept. of Cardiology, Evangelisches Krankenhaus, Duesseldorf (Germany); Yong, M.; Mau, J. [Dept. of Statistics in Medicine, Heinrich Heine Univ., Duesseldorf (Germany); Strauer, B.E. [Dept. of Medicine, Div. of Cardiology, Angiology and Pulmonary Disease, Heinrich Heine Univ., Duesseldorf (Germany)

    2005-07-01

    Aim: Ventricular arrhythmias have been shown to originate in the myocardial peri-infarct region due to irregular heterotopic conduction. Hypoperfused but viable myocardium is often localised in those areas and may be involved in the pathogenesis of arrhythmias. We tested the hypothesis that these myocardial perfusion/metabolism mismatches (MM) are significantly associated with ventricular arrhythmias in the chronic post infarction state. Patients, methods: 47 post infarction patients were included in the study. 33 suffered from ventricular arrhythmia whereas 14 did not. All patients underwent {sup 99m}Tc tetrofosmin SPECT and {sup 18}F-FDG PET. A region-of-interest(ROI)-analysis was used to assess viable myocardium based on predefined MM-criteria. Univariate analyses as well as a logistic regression model for the multivariate analysis were carried out. Results: 94% of the arrhythmic patients displayed at least one MM-segment as compared to 64% of the non-arrhythmic patients. MM-segments and arrhythmia showed a statistically significant relation (p=0.018). The logistic regression model predicted the occurrence or absence of arrhythmia in 85% of all cases. Multivariate analysis gave consistent results, after adjusting for symptomatic chronic heart failure (CHF), aneurysms and age. Conclusion: Our results support the hypothesis that hypoperfused but viable myocardium represents an arrhyhmogenic substrate and is a relevant risk factor for developing ventricular arrhythmias following myocardial infarction. Therefore, the detection of MM-segments allows the identification of patients with a higher risk for future cardiac events. (orig.)

  13. Effect of Notch Location on Fatigue Life Prediction of Strength Mismatched HSLA Steel Weldments

    Institute of Scientific and Technical Information of China (English)

    S. Ravi; V. Balasubramanian; S. Nemat Nasser

    2004-01-01

    Welding of high strength low alloy steels (HSLA) involves usage of Iow, even and high strength filler materials (electrodes) than the parent material depending on the application of the welded structures and the availability of the filler material. In the present investigation, the fatigue crack growth behaviour of weld metal (WM) and heat affected zone (HAZ) regions of under matched (UM), equal matched (EM) and over matched (OM)joints has been studied. The base material used in this investigation is HSLA-80 steel of weldable grade. Shielded metal arc welding (SMAW) process has been used to fabricate the butt joints. Centre cracked tension (CCT) specimen has been used to evaluate the fatigue crack growth behaviour of the welded joints. Fatigue crack growth experiments have been conducted using servo hydraulic controlled fatigue testing machine at constant amplitude loading (R=0). A method has been proposed to predict the fatigue life of HSLA steel welds using fracture mechanics approach by incorporating influences of mismatch ratio (MMR) and notch location.

  14. Predicting Agenesis of the Mandibular Second Premolar from Adjacent Teeth.

    Directory of Open Access Journals (Sweden)

    Geetanjali Sharma

    Full Text Available Early diagnosis of agenesis of the mandibular second premolar (P2 enhances management of the dental arch in the growing child. The aim of this study was to explore the relationship in the development of the mandibular first molar (M1 and first premolar (P1 at early stages of P2 (second premolar. Specifically, we ask if the likelihood of P2 agenesis can be predicted from adjacent developing teeth. We selected archived dental panoramic radiographs with P2 at crown formation stages (N = 212 and calculated the likelihood of P2 at initial mineralisation stage 'Ci' given the tooth stage of adjacent teeth. Our results show that the probability of observing mandibular P2 at initial mineralisation stage 'Ci' decreased as both the adjacent P1 and M1 matured. The modal stage at P2 'Ci' was P1 'Coc' (cusp outline complete and M1 'Crc' (crown complete. Initial mineralisation of P2 was observed up to P1 'Crc' and M1 stage 'R½' (root half. The chance of observing P2 at least 'Coc' (coalescence of cusps was considerably greater prior to these threshold stages compared to later stages of P1 and M1. These findings suggest that P2 is highly unlikely to develop if P1 is beyond 'Crc' and M1 is beyond 'R½'.

  15. OVERLOAD STUDY ON ADJACENT DISC AFTER ARTHRODESIS IN THORACOLUMBAR FRACTURES

    Directory of Open Access Journals (Sweden)

    GUSTAVO SERRA REINAS

    Full Text Available ABSTRACT Objective: To analyze the degeneration of the adjacent disc after arthrodesis due to thoracolumbar fractures. Methods: Eighty-three patients who underwent posterolateral arthrodesis in thoracolumbar levels had their x-rays analyzed for degeneration of adjacent discs to the arthrodesis. The disc spaces were classified by the UCLA scale. Results: Of the 83 patients evaluated, 66 were males (79% and 18 females (21%, with a mean age of 35.5 years. The mean follow-up period was 40 months. As the fractures 75% were between T12 and L2 (p<0.001, being of the A3 type in 65% of the cases (p<0.001. The most common mechanism of injury, accounting for 50% of the cases (p<0.001, was fall from height. Only 6% of the superior discs and 12% of the inferior ones showed some degree of degeneration. No patient underwent a new surgical approach. Conclusion: The incidence of degeneration on adjacent disc in patients after arthrodesis resulting from fractures ranged from 6% to 12% with an average follow-up of 40 months.

  16. Switched-capacitor multiply-by-two amplifier with reduced capacitor mismatches sensitivity and full swing sample signal common-mode voltage

    Institute of Scientific and Technical Information of China (English)

    Xu Xinnan; Yao Suying; Xu Jiangtao; Nie Kaiming

    2012-01-01

    A switched-capacitor amplifier with an accurate gain of two that is insensitive to component mismatch is proposed.This structure is based on associating two sets of two capacitors in cross series during the amplification phase.This circuit permits the common-mode voltage of the sample signal to reach full swing.Using the chargecomplement technique,the proposed amplifier can reduce the impact of parasitic capacitors on the gain accuracy effectively.Simulation results show that as sample signal common-mode voltage changes,the difference between the minimum and maximum gain error is less than 0.03%.When the capacitor mismatch is increased from 0 to 0.2%,the gain error is deteriorated by 0.00015 %.In all simulations,the gain of amplifier is 69 dB.

  17. Diversification and Demography of the Oriental Garden Lizard (Calotes versicolor) on Hainan Island and the Adjacent Mainland

    Science.gov (United States)

    Huang, Yong; Guo, Xianguang; Ho, Simon Y. W.; Shi, Haitao; Li, Jiatang; Li, Jun; Cai, Bo; Wang, Yuezhao

    2013-01-01

    The Oriental garden lizard (Calotes versicolor) is one of the few non-gekkonid lizards that are geographically widespread in the tropics. We investigated its population dynamics on Hainan Island and the adjacent mainland of China and Vietnam, focusing on the impact of cyclic upheaval and submergence of land bridges during the Pleistocene. Our Bayesian phylogenetic analysis reveals two mitochondrial lineages, A and B, which are estimated to have coalesced about 0.26 million years ago (95% credibility interval: 0.05–0.61 million years ago). Lineage A contains individuals mainly from central and southern Wuzhi Mountain on Hainan Island, whereas lineage B mainly comprises individuals from other sites on the island plus the adjacent mainland. The estimated coalescence times within lineages A (0.05 million years ago) and B (0.13 million years ago) fall within a period of cyclical land-bridge formation and disappearance in the Pleistocene. A spatial analysis of molecular variance identified two distinct population groupings: I, primarily containing lineage A, and II, mainly consisting of lineage B. However, haplotypes from lineages A and B occur sympatrically, suggesting that gene flow is ongoing. Neither Wuzhi Mountain nor Qiongzhou Strait and Gulf of Tonkin act as barriers to gene flow among C. versicolor populations. Analyses of the data using mismatch distributions and extended Bayesian skyline plots provide evidence of a relatively stable population size through time for Group I, and moderate population expansions and contractions during the end of the Pleistocene for Group II. We conclude that the phylogeographical patterns of C. versicolor are the combined product of Pleistocene sea-level oscillations and nonphysical barriers to gene flow. PMID:23840304

  18. Influences of Device and Circuit Mismatches on Paralleling Silicon Carbide MOSFETs

    DEFF Research Database (Denmark)

    Li, Helong; Munk-Nielsen, Stig; Wang, Xiongfei

    2016-01-01

    This paper addresses the influences of device and circuit mismatches on paralleling the Silicon Carbide (SiC) MOSFETs. Comprehensive theoretical analysis and experimental validation from paralleled discrete devices to paralleled dies in multichip power modules are first presented. Then, the influ......This paper addresses the influences of device and circuit mismatches on paralleling the Silicon Carbide (SiC) MOSFETs. Comprehensive theoretical analysis and experimental validation from paralleled discrete devices to paralleled dies in multichip power modules are first presented. Then......, the influence of circuit mismatch on paralleling SiC MOSFETs is investigated and experimentally evaluated for the first time. It is found that the mismatch of the switching loop stray inductance can also lead to on-state current unbalance with inductive output current, in addition to the on-state resistance...... of the device. It further reveals that circuit mismatches and a current coupling among the paralleled dies exist in a SiC MOSFET multichip power module, which is critical for the transient current distribution in the power module. Thus, a power module layout with an auxiliary source connection is developed...

  19. Lattice Mismatch Dominant Yet Mechanically Tunable Thermal Conductivity in Bilayer Heterostructures.

    Science.gov (United States)

    Gao, Yuan; Liu, Qingchang; Xu, Baoxing

    2016-05-24

    Heterostructures that are assembled by interfacing two-dimensional (2D) materials offer a unique platform for the emerging devices with unprecedented functions. The attractive functions in heterostructures that are usually absent and beyond the single layer 2D materials are largely affected by the inherent lattice mismatch between layers. Using nonequilibrium molecular dynamics simulations, we show that the phonon thermal transport in the graphene-MoS2 bilayer heterostructure is reduced by the lattice mismatch, and the reduction can be mitigated well by an external tension, weakening the effect of inherent mismatch-induced strain on thermal conductivity. Mechanical analysis in each layered component indicates that the external tension will alleviate the lattice mismatch-induced deformation. The phonon spectra are also softened by the applied tension with a significant shift of frequency from high to low modes. A universal theory is proposed to quantitatively predict the role of the lattice mismatch in thermal conductivity of various bilayer heterostructures and shows good agreement with simulations.

  20. On pattern matching with k mismatches and few don't cares.

    Science.gov (United States)

    Nicolae, Marius; Rajasekaran, Sanguthevar

    2017-02-01

    We consider the problem of pattern matching with k mismatches, where there can be don't care or wild card characters in the pattern. Specifically, given a pattern P of length m and a text T of length n, we want to find all occurrences of P in T that have no more than k mismatches. The pattern can have don't care characters, which match any character. Without don't cares, the best known algorithm for pattern matching with k mismatches has a runtime of [Formula: see text]. With don't cares in the pattern, the best deterministic algorithm has a runtime of O(nk polylog m). Therefore, there is an important gap between the versions with and without don't cares. In this paper we give an algorithm whose runtime increases with the number of don't cares. We define an island to be a maximal length substring of P that does not contain don't cares. Let q be the number of islands in P. We present an algorithm that runs in [Formula: see text] time. If the number of islands q is O(k) this runtime becomes [Formula: see text], which essentially matches the best known runtime for pattern matching with k mismatches without don't cares. If the number of islands q is O(k(2)), this algorithm is asymptotically faster than the previous best algorithm for pattern matching with k mismatches with don't cares in the pattern.