An adaptive fast multipole accelerated Poisson solver for complex geometries
Askham, T.; Cerfon, A. J.
2017-09-01
We present a fast, direct and adaptive Poisson solver for complex two-dimensional geometries based on potential theory and fast multipole acceleration. More precisely, the solver relies on the standard decomposition of the solution as the sum of a volume integral to account for the source distribution and a layer potential to enforce the desired boundary condition. The volume integral is computed by applying the FMM on a square box that encloses the domain of interest. For the sake of efficiency and convergence acceleration, we first extend the source distribution (the right-hand side in the Poisson equation) to the enclosing box as a C0 function using a fast, boundary integral-based method. We demonstrate on multiply connected domains with irregular boundaries that this continuous extension leads to high accuracy without excessive adaptive refinement near the boundary and, as a result, to an extremely efficient ;black box; fast solver.
Adaptive grouping for the higher-order multilevel fast multipole method
DEFF Research Database (Denmark)
Borries, Oscar Peter; Jørgensen, Erik; Meincke, Peter
2014-01-01
An alternative parameter-free adaptive approach for the grouping of the basis function patterns in the multilevel fast multipole method is presented, yielding significant memory savings compared to the traditional Octree grouping for most discretizations, particularly when using higher-order basis...... functions. Results from both a uniformly and nonuniformly meshed scatterer are presented, showing how the technique is worthwhile even for regular meshes, and demonstrating that there is no loss of accuracy in spite of the large reduction in memory requirements and the relatively low computational cost....
Adaptation and performance of the fast multipole method for dipolar systems
Energy Technology Data Exchange (ETDEWEB)
Gorn, N.L. E-mail: db@innovent-jena.de; Berkov, D.V
2004-05-01
We have developed a new specialized version of the fast multipole method (FMM) for dipolar systems. For this purpose we have derived general expressions of the multipole expansion coefficients (in spherical coordinates) for a system of point dipoles with the potential phi (cursive,open) Greek{sub dip}{approx}1/r{sup 2}. Our version is especially useful for simulations of fine magnetic particle systems (magnetic nanocomposites, ferrofluids), molecular dipolar fluids or electric dipolar glasses.
Lu, Benzhuo; Cheng, Xiaolin; Huang, Jingfang; McCammon, J. Andrew
2013-11-01
A Fortran program package is introduced for rapid evaluation of the electrostatic potentials and forces in biomolecular systems modeled by the linearized Poisson-Boltzmann equation. The numerical solver utilizes a well-conditioned boundary integral equation (BIE) formulation, a node-patch discretization scheme, a Krylov subspace iterative solver package with reverse communication protocols, and an adaptive new version of the fast multipole method in which the exponential expansions are used to diagonalize the multipole-to-local translations. The program and its full description, as well as several closely related libraries and utility tools are available at http://lsec.cc.ac.cn/~lubz/afmpb.html and a mirror site at http://mccammon.ucsd.edu/. This paper is a brief summary of the program: the algorithms, the implementation and the usage. Restrictions: Only three or six significant digits options are provided in this version. Unusual features: Most of the codes are in Fortran77 style. Memory allocation functions from Fortran90 and above are used in a few subroutines. Additional comments: The current version of the codes is designed and written for single core/processor desktop machines. Check http://lsec.cc.ac.cn/lubz/afmpb.html for updates and changes. Running time: The running time varies with the number of discretized elements (N) in the system and their distributions. In most cases, it scales linearly as a function of N.
Revision of FMM-Yukawa: An adaptive fast multipole method for screened Coulomb interactions
Zhang, Bo; Huang, Jingfang; Pitsianis, Nikos P.; Sun, Xiaobai
2010-12-01
FMM-YUKAWA is a mathematical software package primarily for rapid evaluation of the screened Coulomb interactions of N particles in three dimensional space. Since its release, we have revised and re-organized the data structure, software architecture, and user interface, for the purpose of enabling more flexible, broader and easier use of the package. The package and its documentation are available at http://www.fastmultipole.org/, along with a few other closely related mathematical software packages. New version program summaryProgram title: FMM-Yukawa Catalogue identifier: AEEQ_v2_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEEQ_v2_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GNU GPL 2.0 No. of lines in distributed program, including test data, etc.: 78 704 No. of bytes in distributed program, including test data, etc.: 854 265 Distribution format: tar.gz Programming language: FORTRAN 77, FORTRAN 90, and C. Requires gcc and gfortran version 4.4.3 or later Computer: All Operating system: Any Classification: 4.8, 4.12 Catalogue identifier of previous version: AEEQ_v1_0 Journal reference of previous version: Comput. Phys. Comm. 180 (2009) 2331 Does the new version supersede the previous version?: Yes Nature of problem: To evaluate the screened Coulomb potential and force field of N charged particles, and to evaluate a convolution type integral where the Green's function is the fundamental solution of the modified Helmholtz equation. Solution method: The new version of fast multipole method (FMM) that diagonalizes the multipole-to-local translation operator is applied with the tree structure adaptive to sample particle locations. Reasons for new version: To handle much larger particle ensembles, to enable the iterative use of the subroutines in a solver, and to remove potential contention in assignments for parallelization. Summary of revisions: The software package FMM-Yukawa has been
Ren, Zhengyong; Tang, Jingtian; Kalscheuer, Thomas; Maurer, Hansruedi
2017-01-01
A novel fast and accurate algorithm is developed for large-scale 3-D gravity and magnetic modeling problems. An unstructured grid discretization is used to approximate sources with arbitrary mass and magnetization distributions. A novel adaptive multilevel fast multipole (AMFM) method is developed to reduce the modeling time. An observation octree is constructed on a set of arbitrarily distributed observation sites, while a source octree is constructed on a source tetrahedral grid. A novel characteristic is the independence between the observation octree and the source octree, which simplifies the implementation of different survey configurations such as airborne and ground surveys. Two synthetic models, a cubic model and a half-space model with mountain-valley topography, are tested. As compared to analytical solutions of gravity and magnetic signals, excellent agreements of the solutions verify the accuracy of our AMFM algorithm. Finally, our AMFM method is used to calculate the terrain effect on an airborne gravity data set for a realistic topography model represented by a triangular surface retrieved from a digital elevation model. Using 16 threads, more than 5800 billion interactions between 1,002,001 observation points and 5,839,830 tetrahedral elements are computed in 453.6 s. A traditional first-order Gaussian quadrature approach requires 3.77 days. Hence, our new AMFM algorithm not only can quickly compute the gravity and magnetic signals for complicated problems but also can substantially accelerate the solution of 3-D inversion problems.
A fast multipole transformation for global climate calculations
Energy Technology Data Exchange (ETDEWEB)
Holmes, J.A.; Wang, Z.; Drake, J.B.; Lyon, B.F.; Chen, W.T.
1996-01-01
A fast multipole transformation is adapted to the evaluation of summations that occur in global climate calculations when transforming between spatial and spherical harmonic representations. For each summation, the timing of the fast multipole transformation scales linearly with the number of latitude gridpoints, but the timing for direct evaluations scales quadratically. In spite of a larger computational overhead, this scaling advantage renders the fast multipole method faster than direct evaluation for transformations involving greater than approximately 300 to 500 gridpoints. Convergence of the fast multipole transformation is accurate to machine precision. As the resolution in global climate calculations continues to increase, an increasingly large fraction of the computational work involves the transformation between spatial and spherical harmonic representations. The fast multipole transformation offers a significant reduction in computational time for these high-resolution cases.
2015-06-01
Particle-to- Particle (P2P) Graphics Processor Unit (GPU) Kernel for Black-Box Adaptive Fast Multipole Method by Richard H Haney and Dale Shires......ARL-TR-7315 ● JUNE 2015 US Army Research Laboratory Analysis and Implementation of Particle-to- Particle (P2P) Graphics Processor
A pragmatic overview of fast multipole methods
Energy Technology Data Exchange (ETDEWEB)
Strickland, J.H.; Baty, R.S.
1995-12-01
A number of physics problems can be modeled by a set of N elements which have pair-wise interactions with one another. A direct solution technique requires computational effort which is O(N{sup 2}). Fast multipole methods (FMM) have been widely used in recent years to obtain solutions to these problems requiring a computational effort of only 0 (N lnN) or O (N). In this paper we present an overview of several variations of the fast multipole method along with examples of its use in solving a variety of physical problems.
Scalable force directed graph layout algorithms using fast multipole methods
Yunis, Enas Abdulrahman
2012-06-01
We present an extension to ExaFMM, a Fast Multipole Method library, as a generalized approach for fast and scalable execution of the Force-Directed Graph Layout algorithm. The Force-Directed Graph Layout algorithm is a physics-based approach to graph layout that treats the vertices V as repelling charged particles with the edges E connecting them acting as springs. Traditionally, the amount of work required in applying the Force-Directed Graph Layout algorithm is O(|V|2 + |E|) using direct calculations and O(|V| log |V| + |E|) using truncation, filtering, and/or multi-level techniques. Correct application of the Fast Multipole Method allows us to maintain a lower complexity of O(|V| + |E|) while regaining most of the precision lost in other techniques. Solving layout problems for truly large graphs with millions of vertices still requires a scalable algorithm and implementation. We have been able to leverage the scalability and architectural adaptability of the ExaFMM library to create a Force-Directed Graph Layout implementation that runs efficiently on distributed multicore and multi-GPU architectures. © 2012 IEEE.
Scalable fast multipole accelerated vortex methods
Hu, Qi
2014-05-01
The fast multipole method (FMM) is often used to accelerate the calculation of particle interactions in particle-based methods to simulate incompressible flows. To evaluate the most time-consuming kernels - the Biot-Savart equation and stretching term of the vorticity equation, we mathematically reformulated it so that only two Laplace scalar potentials are used instead of six. This automatically ensuring divergence-free far-field computation. Based on this formulation, we developed a new FMM-based vortex method on heterogeneous architectures, which distributed the work between multicore CPUs and GPUs to best utilize the hardware resources and achieve excellent scalability. The algorithm uses new data structures which can dynamically manage inter-node communication and load balance efficiently, with only a small parallel construction overhead. This algorithm can scale to large-sized clusters showing both strong and weak scalability. Careful error and timing trade-off analysis are also performed for the cutoff functions induced by the vortex particle method. Our implementation can perform one time step of the velocity+stretching calculation for one billion particles on 32 nodes in 55.9 seconds, which yields 49.12 Tflop/s.
Performance Benchmarking of Fast Multipole Methods
Al-Harthi, Noha A.
2013-06-01
The current trends in computer architecture are shifting towards smaller byte/flop ratios, while available parallelism is increasing at all levels of granularity – vector length, core count, and MPI process. Intel’s Xeon Phi coprocessor, NVIDIA’s Kepler GPU, and IBM’s BlueGene/Q all have a Byte/flop ratio close to 0.2, which makes it very difficult for most algorithms to extract a high percentage of the theoretical peak flop/s from these architectures. Popular algorithms in scientific computing such as FFT are continuously evolving to keep up with this trend in hardware. In the meantime it is also necessary to invest in novel algorithms that are more suitable for computer architectures of the future. The fast multipole method (FMM) was originally developed as a fast algorithm for ap- proximating the N-body interactions that appear in astrophysics, molecular dynamics, and vortex based fluid dynamics simulations. The FMM possesses have a unique combination of being an efficient O(N) algorithm, while having an operational intensity that is higher than a matrix-matrix multiplication. In fact, the FMM can reduce the requirement of Byte/flop to around 0.01, which means that it will remain compute bound until 2020 even if the cur- rent trend in microprocessors continues. Despite these advantages, there have not been any benchmarks of FMM codes on modern architectures such as Xeon Phi, Kepler, and Blue- Gene/Q. This study aims to provide a comprehensive benchmark of a state of the art FMM code “exaFMM” on the latest architectures, in hopes of providing a useful reference for deciding when the FMM will become useful as the computational engine in a given application code. It may also serve as a warning to certain problem size domains areas where the FMM will exhibit insignificant performance improvements. Such issues depend strongly on the asymptotic constants rather than the asymptotics themselves, and therefore are strongly implementation and hardware
Fast Multipole-Based Preconditioner for Sparse Iterative Solvers
Ibeid, Huda
2014-05-04
Among optimal hierarchical algorithms for the computational solution of elliptic problems, the Fast Multipole Method (FMM) stands out for its adaptability to emerging architectures, having high arithmetic intensity, tunable accuracy, and relaxed global synchronization requirements. We demonstrate that, beyond its traditional use as a solver in problems for which explicit free-space kernel representations are available, the FMM has applicability as a preconditioner in finite domain elliptic boundary value problems, by equipping it with boundary integral capability for finite boundaries and by wrapping it in a Krylov method for extensibility to more general operators. Compared with multilevel methods, it is capable of comparable algebraic convergence rates down to the truncation error of the discretized PDE, and it has superior multicore and distributed memory scalability properties on commodity architecture supercomputers.
A parallel fast multipole method for elliptic difference equations
Liska, Sebastian
2014-01-01
A new fast multipole formulation for solving elliptic PDEs on unbounded domains and its parallel implementation are presented. This method formally discretizes the PDE on an infinite Cartesian grid, and then solves the corresponding difference equations. In the analog to solving continuous inhomogeneous differential equations using Green's functions, the proposed method uses the fundamental solution of the discrete operator on an infinite grid, or lattice Green's function. Fast solutions O(N) are achieved by using a kernel-independent interpolation-based fast multipole method. Unlike other fast multipole algorithms, our approach exploits the regularity of the underlying Cartesian grid and the efficiency of FFTs to reduce the computation time. Our parallel implementation allows communications and computations to be overlapped and requires minimal global synchronization. The accuracy, efficiency, and parallel performance of the method are demonstrated through numerical experiments on the discrete 3D Poisson equ...
A new simple multidomain fast multipole boundary element method
Huang, S.; Liu, Y. J.
2016-09-01
A simple multidomain fast multipole boundary element method (BEM) for solving potential problems is presented in this paper, which can be applied to solve a true multidomain problem or a large-scale single domain problem using the domain decomposition technique. In this multidomain BEM, the coefficient matrix is formed simply by assembling the coefficient matrices of each subdomain and the interface conditions between subdomains without eliminating any unknown variables on the interfaces. Compared with other conventional multidomain BEM approaches, this new approach is more efficient with the fast multipole method, regardless how the subdomains are connected. Instead of solving the linear system of equations directly, the entire coefficient matrix is partitioned and decomposed using Schur complement in this new approach. Numerical results show that the new multidomain fast multipole BEM uses fewer iterations in most cases with the iterative equation solver and less CPU time than the traditional fast multipole BEM in solving large-scale BEM models. A large-scale fuel cell model with more than 6 million elements was solved successfully on a cluster within 3 h using the new multidomain fast multipole BEM.
Gaussian translation operator for Multi-Level Fast Multipole Method
DEFF Research Database (Denmark)
Borries, Oscar Peter; Hansen, Per Christian; Sorensen, Stig B.
2014-01-01
Results using a new translation operator for the Multi-Level Fast Multipole Method are presented. Based on Gaussian beams, the translation operator allows a significant portion of the plane-wave directions to be neglected, resulting in a much faster translation step.......Results using a new translation operator for the Multi-Level Fast Multipole Method are presented. Based on Gaussian beams, the translation operator allows a significant portion of the plane-wave directions to be neglected, resulting in a much faster translation step....
Multilevel Fast Multipole Method for Higher Order Discretizations
DEFF Research Database (Denmark)
Borries, Oscar Peter; Meincke, Peter; Jorgensen, Erik;
2014-01-01
The multi-level fast multipole method (MLFMM) for a higher order (HO) discretization is demonstrated on high-frequency (HF) problems, illustrating for the first time how an efficient MLFMM for HO can be achieved even for very large groups. Applying several novel ideas, beneficial to both lower or...
Improved Multilevel Fast Multipole Method for Higher-Order discretizations
DEFF Research Database (Denmark)
Borries, Oscar Peter; Meincke, Peter; Jorgensen, Erik
2014-01-01
The Multilevel Fast Multipole Method (MLFMM) allows for a reduced computational complexity when solving electromagnetic scattering problems. Combining this with the reduced number of unknowns provided by Higher-Order discretizations has proven to be a difficult task, with the general conclusion b...
Institute of Scientific and Technical Information of China (English)
Chang-Jun Zheng; Hai-Bo Chen; Lei-Lei Chen
2013-01-01
This paper presents a novel wideband fast multipole boundary element approach to 3D half-space/planesymmetric acoustic wave problems.The half-space fundamental solution is employed in the boundary integral equations so that the tree structure required in the fast multipole algorithm is constructed for the boundary elements in the real domain only.Moreover,a set of symmetric relations between the multipole expansion coefficients of the real and image domains are derived,and the half-space fundamental solution is modified for the purpose of applying such relations to avoid calculating,translating and saving the multipole/local expansion coefficients of the image domain.The wideband adaptive multilevel fast multipole algorithm associated with the iterative solver GMRES is employed so that the present method is accurate and efficient for both lowand high-frequency acoustic wave problems.As for exterior acoustic problems,the Burton-Miller method is adopted to tackle the fictitious eigenfrequency problem involved in the conventional boundary integral equation method.Details on the implementation of the present method are described,and numerical examples are given to demonstrate its accuracy and efficiency.
Data-driven execution of fast multipole methods
Ltaief, Hatem
2013-09-17
Fast multipole methods (FMMs) have O (N) complexity, are compute bound, and require very little synchronization, which makes them a favorable algorithm on next-generation supercomputers. Their most common application is to accelerate N-body problems, but they can also be used to solve boundary integral equations. When the particle distribution is irregular and the tree structure is adaptive, load balancing becomes a non-trivial question. A common strategy for load balancing FMMs is to use the work load from the previous step as weights to statically repartition the next step. The authors discuss in the paper another approach based on data-driven execution to efficiently tackle this challenging load balancing problem. The core idea consists of breaking the most time-consuming stages of the FMMs into smaller tasks. The algorithm can then be represented as a directed acyclic graph where nodes represent tasks and edges represent dependencies among them. The execution of the algorithm is performed by asynchronously scheduling the tasks using the queueing and runtime for kernels runtime environment, in a way such that data dependencies are not violated for numerical correctness purposes. This asynchronous scheduling results in an out-of-order execution. The performance results of the data-driven FMM execution outperform the previous strategy and show linear speedup on a quad-socket quad-core Intel Xeon system.Copyright © 2013 John Wiley & Sons, Ltd. Copyright © 2013 John Wiley & Sons, Ltd.
Magnetostatic solution by hybrid technique and fast multipole method
Energy Technology Data Exchange (ETDEWEB)
Gruosso, G. [Politecnico di Milano, Dipartimento di Elettronica e Informazione, I-20133 Milan (Italy); Repetto, M. [Politecnico di Torino, Dipartimento di Ingegneria Elettrica, C.so Duca Abruzzi 24, I-10129 Turin (Italy)], E-mail: maurizio.repetto@polito.it
2008-02-01
The use of fast multipole method (FMM) in the solution of a magnetostatic problem is presented. The magnetostatic solution strategy is based on finite formulation of electromagnetic field coupled with an integral formulation for the definition of boundary conditions on the external surface of the unstructured mesh. Due to the hypothesis of micromagnetic problem, the resulting matrix structure is sparse and integral terms are only on the RHS. Magnetic surface charge is used as source of these integral terms and is localized on the faces between tetrahedra. The computation of the integral terms can be performed by analytical formulas for the near field contributes and by FMM for far field ones.
Fourier-Based Fast Multipole Method for the Helmholtz Equation
Cecka, Cris
2013-01-01
The fast multipole method (FMM) has had great success in reducing the computational complexity of solving the boundary integral form of the Helmholtz equation. We present a formulation of the Helmholtz FMM that uses Fourier basis functions rather than spherical harmonics. By modifying the transfer function in the precomputation stage of the FMM, time-critical stages of the algorithm are accelerated by causing the interpolation operators to become straightforward applications of fast Fourier transforms, retaining the diagonality of the transfer function, and providing a simplified error analysis. Using Fourier analysis, constructive algorithms are derived to a priori determine an integration quadrature for a given error tolerance. Sharp error bounds are derived and verified numerically. Various optimizations are considered to reduce the number of quadrature points and reduce the cost of computing the transfer function. © 2013 Society for Industrial and Applied Mathematics.
Pipelining the Fast Multipole Method over a Runtime System
Agullo, Emmanuel; Coulaud, Olivier; Darve, Eric; Messner, Matthias; Toru, Takahashi
2012-01-01
Fast Multipole Methods (FMM) are a fundamental operation for the simulation of many physical problems. The high performance design of such methods usually requires to carefully tune the algorithm for both the targeted physics and the hardware. In this paper, we propose a new approach that achieves high performance across architectures. Our method consists of expressing the FMM algorithm as a task flow and employing a state-of-the-art runtime system, StarPU, in order to process the tasks on the different processing units. We carefully design the task flow, the mathematical operators, their Central Processing Unit (CPU) and Graphics Processing Unit (GPU) implementations, as well as scheduling schemes. We compute potentials and forces of 200 million particles in 48.7 seconds on a homogeneous 160 cores SGI Altix UV 100 and of 38 million particles in 13.34 seconds on a heterogeneous 12 cores Intel Nehalem processor enhanced with 3 Nvidia M2090 Fermi GPUs.
Fast Multipole-Based Elliptic PDE Solver and Preconditioner
Ibeid, Huda
2016-12-07
Exascale systems are predicted to have approximately one billion cores, assuming Gigahertz cores. Limitations on affordable network topologies for distributed memory systems of such massive scale bring new challenges to the currently dominant parallel programing model. Currently, there are many efforts to evaluate the hardware and software bottlenecks of exascale designs. It is therefore of interest to model application performance and to understand what changes need to be made to ensure extrapolated scalability. Fast multipole methods (FMM) were originally developed for accelerating N-body problems for particle-based methods in astrophysics and molecular dynamics. FMM is more than an N-body solver, however. Recent efforts to view the FMM as an elliptic PDE solver have opened the possibility to use it as a preconditioner for even a broader range of applications. In this thesis, we (i) discuss the challenges for FMM on current parallel computers and future exascale architectures, with a focus on inter-node communication, and develop a performance model that considers the communication patterns of the FMM for spatially quasi-uniform distributions, (ii) employ this performance model to guide performance and scaling improvement of FMM for all-atom molecular dynamics simulations of uniformly distributed particles, and (iii) demonstrate that, beyond its traditional use as a solver in problems for which explicit free-space kernel representations are available, the FMM has applicability as a preconditioner in finite domain elliptic boundary value problems, by equipping it with boundary integral capability for satisfying conditions at finite boundaries and by wrapping it in a Krylov method for extensibility to more general operators. Compared with multilevel methods, FMM is capable of comparable algebraic convergence rates down to the truncation error of the discretized PDE, and it has superior multicore and distributed memory scalability properties on commodity
A task parallel implementation of fast multipole methods
Taura, Kenjiro
2012-11-01
This paper describes a task parallel implementation of ExaFMM, an open source implementation of fast multipole methods (FMM), using a lightweight task parallel library MassiveThreads. Although there have been many attempts on parallelizing FMM, experiences have almost exclusively been limited to formulation based on flat homogeneous parallel loops. FMM in fact contains operations that cannot be readily expressed in such conventional but restrictive models. We show that task parallelism, or parallel recursions in particular, allows us to parallelize all operations of FMM naturally and scalably. Moreover it allows us to parallelize a \\'\\'mutual interaction\\'\\' for force/potential evaluation, which is roughly twice as efficient as a more conventional, unidirectional force/potential evaluation. The net result is an open source FMM that is clearly among the fastest single node implementations, including those on GPUs; with a million particles on a 32 cores Sandy Bridge 2.20GHz node, it completes a single time step including tree construction and force/potential evaluation in 65 milliseconds. The study clearly showcases both programmability and performance benefits of flexible parallel constructs over more monolithic parallel loops. © 2012 IEEE.
Fast multipole method applied to Lagrangian simulations of vortical flows
Ricciardi, Túlio R.; Wolf, William R.; Bimbato, Alex M.
2017-10-01
Lagrangian simulations of unsteady vortical flows are accelerated by the multi-level fast multipole method, FMM. The combination of the FMM algorithm with a discrete vortex method, DVM, is discussed for free domain and periodic problems with focus on implementation details to reduce numerical dissipation and avoid spurious solutions in unsteady inviscid flows. An assessment of the FMM-DVM accuracy is presented through a comparison with the direct calculation of the Biot-Savart law for the simulation of the temporal evolution of an aircraft wake in the Trefftz plane. The role of several parameters such as time step restriction, truncation of the FMM series expansion, number of particles in the wake discretization and machine precision is investigated and we show how to avoid spurious instabilities. The FMM-DVM is also applied to compute the evolution of a temporal shear layer with periodic boundary conditions. A novel approach is proposed to achieve accurate solutions in the periodic FMM. This approach avoids a spurious precession of the periodic shear layer and solutions are shown to converge to the direct Biot-Savart calculation using a cotangent function.
Scalable fast multipole methods for vortex element methods
Hu, Qi
2012-11-01
We use a particle-based method to simulate incompressible flows, where the Fast Multipole Method (FMM) is used to accelerate the calculation of particle interactions. The most time-consuming kernelsâ\\'the Biot-Savart equation and stretching term of the vorticity equationâ\\'are mathematically reformulated so that only two Laplace scalar potentials are used instead of six, while automatically ensuring divergence-free far-field computation. Based on this formulation, and on our previous work for a scalar heterogeneous FMM algorithm, we develop a new FMM-based vortex method capable of simulating general flows including turbulence on heterogeneous architectures, which distributes the work between multi-core CPUs and GPUs to best utilize the hardware resources and achieve excellent scalability. The algorithm also uses new data structures which can dynamically manage inter-node communication and load balance efficiently but with only a small parallel construction overhead. This algorithm can scale to large-sized clusters showing both strong and weak scalability. Careful error and timing trade-off analysis are also performed for the cutoff functions induced by the vortex particle method. Our implementation can perform one time step of the velocity+stretching for one billion particles on 32 nodes in 55.9 seconds, which yields 49.12 Tflop/s. © 2012 IEEE.
Energy Technology Data Exchange (ETDEWEB)
Wang, Z.; Lupo, J.; Patnaik, S.S.; McKenney, A.; Pachter, R.
1999-07-01
The Fast Multipole Method (FMM) offers an efficient way (order O(N)) to handle long range electrostatic interactions, thus enabling more realistic molecular dynamics simulations of large molecular systems. The performance of the fast molecular dynamics (FMD) code, a parallel MD code being developed in the group, using the three-dimensional fast multipole method, shows a good speedup. The application to the full atomic-scale molecular dynamics simulation of a liquid crystalline droplet of 4-n-pentyl-4{prime}-cyanobiphenyl (5CB) molecules, of size 35,872 atoms, shows strong surface effects on various orientational order parameters.
Geodynamic simulations using the fast multipole boundary element method
Drombosky, Tyler W.
Interaction between viscous fluids models two important phenomena in geophysics: (i) the evolution of partially molten rocks, and (ii) the dynamics of Ultralow-Velocity Zones. Previous attempts to numerically model these behaviors have been plagued either by poor resolution at the fluid interfaces or high computational costs. We employ the Fast Multipole Boundary Element Method, which tracks the evolution of the fluid interfaces explicitly and is scalable to large problems, to model these systems. The microstructure of partially molten rocks strongly influences the macroscopic physical properties. The fractional area of intergranular contact, contiguity, is a key parameter that controls the elastic strength of the grain network in the partially molten aggregate. We study the influence of matrix deformation on the contiguity of an aggregate by carrying out pure shear and simple shear deformations of an aggregate. We observe that the differential shortening, the normalized difference between the major and minor axes of grains is inversely related to the ratio between the principal components of the contiguity tensor. From the numerical results, we calculate the seismic anisotropy resulting from melt redistribution during pure and simple shear deformation. During deformation, the melt is expelled from tubules along three grain corners to films along grain edges. The initially isotropic fractional area of intergranular contact, contiguity, becomes anisotropic due to deformation. Consequently, the component of contiguity evaluated on the plane parallel to the axis of maximum compressive stress decreases. We demonstrate that the observed global shear wave anisotropy and shear wave speed reduction of the Lithosphere-Asthenosphere Boundary are best explained by 0.1 vol% partial melt distributed in horizontal films created by deformation. We use our microsimulation in conjunction with a large scale mantle deep Earth simulation to gain insight into the formation of
Lorenzen, Konstantin; Mathias, Gerald; Tavan, Paul
2015-11-14
Hamiltonian Dielectric Solvent (HADES) is a recent method [S. Bauer et al., J. Chem. Phys. 140, 104103 (2014)] which enables atomistic Hamiltonian molecular dynamics (MD) simulations of peptides and proteins in dielectric solvent continua. Such simulations become rapidly impractical for large proteins, because the computational effort of HADES scales quadratically with the number N of atoms. If one tries to achieve linear scaling by applying a fast multipole method (FMM) to the computation of the HADES electrostatics, the Hamiltonian character (conservation of total energy, linear, and angular momenta) may get lost. Here, we show that the Hamiltonian character of HADES can be almost completely preserved, if the structure-adapted fast multipole method (SAMM) as recently redesigned by Lorenzen et al. [J. Chem. Theory Comput. 10, 3244-3259 (2014)] is suitably extended and is chosen as the FMM module. By this extension, the HADES/SAMM forces become exact gradients of the HADES/SAMM energy. Their translational and rotational invariance then guarantees (within the limits of numerical accuracy) the exact conservation of the linear and angular momenta. Also, the total energy is essentially conserved-up to residual algorithmic noise, which is caused by the periodically repeated SAMM interaction list updates. These updates entail very small temporal discontinuities of the force description, because the employed SAMM approximations represent deliberately balanced compromises between accuracy and efficiency. The energy-gradient corrected version of SAMM can also be applied, of course, to MD simulations of all-atom solvent-solute systems enclosed by periodic boundary conditions. However, as we demonstrate in passing, this choice does not offer any serious advantages.
Energy Technology Data Exchange (ETDEWEB)
Lorenzen, Konstantin; Mathias, Gerald; Tavan, Paul, E-mail: tavan@physik.uni-muenchen.de [Lehrstuhl für BioMolekulare Optik, Ludig–Maximilians Universität München, Oettingenstr. 67, 80538 München (Germany)
2015-11-14
Hamiltonian Dielectric Solvent (HADES) is a recent method [S. Bauer et al., J. Chem. Phys. 140, 104103 (2014)] which enables atomistic Hamiltonian molecular dynamics (MD) simulations of peptides and proteins in dielectric solvent continua. Such simulations become rapidly impractical for large proteins, because the computational effort of HADES scales quadratically with the number N of atoms. If one tries to achieve linear scaling by applying a fast multipole method (FMM) to the computation of the HADES electrostatics, the Hamiltonian character (conservation of total energy, linear, and angular momenta) may get lost. Here, we show that the Hamiltonian character of HADES can be almost completely preserved, if the structure-adapted fast multipole method (SAMM) as recently redesigned by Lorenzen et al. [J. Chem. Theory Comput. 10, 3244-3259 (2014)] is suitably extended and is chosen as the FMM module. By this extension, the HADES/SAMM forces become exact gradients of the HADES/SAMM energy. Their translational and rotational invariance then guarantees (within the limits of numerical accuracy) the exact conservation of the linear and angular momenta. Also, the total energy is essentially conserved—up to residual algorithmic noise, which is caused by the periodically repeated SAMM interaction list updates. These updates entail very small temporal discontinuities of the force description, because the employed SAMM approximations represent deliberately balanced compromises between accuracy and efficiency. The energy-gradient corrected version of SAMM can also be applied, of course, to MD simulations of all-atom solvent-solute systems enclosed by periodic boundary conditions. However, as we demonstrate in passing, this choice does not offer any serious advantages.
Fast Multipole BEM for 3-D Elastostatic Problems with Applications for Thin Structures
Institute of Scientific and Technical Information of China (English)
ZHAO Libin; YAO Zhenhan
2005-01-01
The fast multipole method (FMM) has been used to reduce the computing operations and memory requirements in large numerical analysis problems. In this paper, the FMM based on Taylor expansions is combined with the boundary element method (BEM) for three-dimensional elastostatic problems to solve thin plate and shell structures. The fast multipole boundary element method (FM-BEM) requires O(N) operations and memory for problems with N unknowns. The numerical results indicate that for the analysis of thin structures, the FM-BEM is much more efficient than the conventional BEM and the accuracy achieved is sufficient for engineering applications.
Palmesi, Pietro; Bruckner, Florian; Abert, Claas; Suess, Dieter
2016-01-01
The long-range magnetic field is the most time-consuming part in micromagnetic simulations. Improvements both on a numerical and computational basis can relief problems related to this bottleneck. This work presents an efficient implementation of the Fast Multipole Method [FMM] for the magnetic scalar potential as used in micromagnetics. We assume linearly magnetized tetrahedral sources, treat the near field directly and use analytical integration on the multipole expansion in the far field. This approach tackles important issues like the vectorial and continuous nature of the magnetic field. By using FMM the calculations scale linearly in time and memory.
Institute of Scientific and Technical Information of China (English)
Ting Lei; Zhenhan Yao; Haitao Wang; Pengbo Wang
2006-01-01
In this paper, an adaptive boundary element method (BEM) is presented for solving 3-D elasticity problems. The numerical scheme is accelerated by the new version of fast multipole method (FMM) and parallelized on distributed memory architectures. The resulting solver is applied to the study of representative volume element (RVE)for short fiberreinforced composites with complex inclusion geometry. Numerical examples performed on a 32-processor cluster show that the proposed method is both accurate and efficient. And can solve problems of large size that are challenging to existing state-of-the-art domain methods.
Application of Fast Multipole Methods to the NASA Fast Scattering Code
Dunn, Mark H.; Tinetti, Ana F.
2008-01-01
The NASA Fast Scattering Code (FSC) is a versatile noise prediction program designed to conduct aeroacoustic noise reduction studies. The equivalent source method is used to solve an exterior Helmholtz boundary value problem with an impedance type boundary condition. The solution process in FSC v2.0 requires direct manipulation of a large, dense system of linear equations, limiting the applicability of the code to small scales and/or moderate excitation frequencies. Recent advances in the use of Fast Multipole Methods (FMM) for solving scattering problems, coupled with sparse linear algebra techniques, suggest that a substantial reduction in computer resource utilization over conventional solution approaches can be obtained. Implementation of the single level FMM (SLFMM) and a variant of the Conjugate Gradient Method (CGM) into the FSC is discussed in this paper. The culmination of this effort, FSC v3.0, was used to generate solutions for three configurations of interest. Benchmarking against previously obtained simulations indicate that a twenty-fold reduction in computational memory and up to a four-fold reduction in computer time have been achieved on a single processor.
Energy Technology Data Exchange (ETDEWEB)
Schwörer, Magnus; Lorenzen, Konstantin; Mathias, Gerald; Tavan, Paul, E-mail: paul.tavan@physik.uni-muenchen.de [Lehrstuhl für BioMolekulare Optik, Ludwig–Maximilians Universität München, Oettingenstr. 67, 80538 München (Germany)
2015-03-14
Recently, a novel approach to hybrid quantum mechanics/molecular mechanics (QM/MM) molecular dynamics (MD) simulations has been suggested [Schwörer et al., J. Chem. Phys. 138, 244103 (2013)]. Here, the forces acting on the atoms are calculated by grid-based density functional theory (DFT) for a solute molecule and by a polarizable molecular mechanics (PMM) force field for a large solvent environment composed of several 10{sup 3}-10{sup 5} molecules as negative gradients of a DFT/PMM hybrid Hamiltonian. The electrostatic interactions are efficiently described by a hierarchical fast multipole method (FMM). Adopting recent progress of this FMM technique [Lorenzen et al., J. Chem. Theory Comput. 10, 3244 (2014)], which particularly entails a strictly linear scaling of the computational effort with the system size, and adapting this revised FMM approach to the computation of the interactions between the DFT and PMM fragments of a simulation system, here, we show how one can further enhance the efficiency and accuracy of such DFT/PMM-MD simulations. The resulting gain of total performance, as measured for alanine dipeptide (DFT) embedded in water (PMM) by the product of the gains in efficiency and accuracy, amounts to about one order of magnitude. We also demonstrate that the jointly parallelized implementation of the DFT and PMM-MD parts of the computation enables the efficient use of high-performance computing systems. The associated software is available online.
The fast multipole method and point dipole moment polarizable force fields
Coles, Jonathan P.; Masella, Michel
2015-01-01
We present an implementation of the fast multipole method for computing Coulombic electrostatic and polarization forces from polarizable force-fields based on induced point dipole moments. We demonstrate the expected O(N) scaling of that approach by performing single energy point calculations on hexamer protein subunits of the mature HIV-1 capsid. We also show the long time energy conservation in molecular dynamics at the nanosecond scale by performing simulations of a protein complex embedded in a coarse-grained solvent using a standard integrator and a multiple time step integrator. Our tests show the applicability of fast multipole method combined with state-of-the-art chemical models in molecular dynamical systems.
Ergul, Ozgur
2014-01-01
The Multilevel Fast Multipole Algorithm (MLFMA) for Solving Large-Scale Computational Electromagnetic Problems provides a detailed and instructional overview of implementing MLFMA. The book: Presents a comprehensive treatment of the MLFMA algorithm, including basic linear algebra concepts, recent developments on the parallel computation, and a number of application examplesCovers solutions of electromagnetic problems involving dielectric objects and perfectly-conducting objectsDiscusses applications including scattering from airborne targets, scattering from red
Energy Technology Data Exchange (ETDEWEB)
White, J.; Phillips, J.R.; Korsmeyer, T. [Massachusetts Institute of Technology, Cambridge, MA (United States)
1994-12-31
Mixed first- and second-kind surface integral equations with (1/r) and {partial_derivative}/{partial_derivative} (1/r) kernels are generated by a variety of three-dimensional engineering problems. For such problems, Nystroem type algorithms can not be used directly, but an expansion for the unknown, rather than for the entire integrand, can be assumed and the product of the singular kernal and the unknown integrated analytically. Combining such an approach with a Galerkin or collocation scheme for computing the expansion coefficients is a general approach, but generates dense matrix problems. Recently developed fast algorithms for solving these dense matrix problems have been based on multipole-accelerated iterative methods, in which the fast multipole algorithm is used to rapidly compute the matrix-vector products in a Krylov-subspace based iterative method. Another approach to rapidly computing the dense matrix-vector products associated with discretized integral equations follows more along the lines of a multigrid algorithm, and involves projecting the surface unknowns onto a regular grid, then computing using the grid, and finally interpolating the results from the regular grid back to the surfaces. Here, the authors describe a precorrectted-FFT approach which can replace the fast multipole algorithm for accelerating the dense matrix-vector product associated with discretized potential integral equations. The precorrected-FFT method, described below, is an order n log(n) algorithm, and is asymptotically slower than the order n fast multipole algorithm. However, initial experimental results indicate the method may have a significant constant factor advantage for a variety of engineering problems.
An efficient blocking M2L translation for low-frequency fast multipole method in three dimensions
Takahashi, Toru; Shimba, Yuta; Isakari, Hiroshi; Matsumoto, Toshiro
2016-05-01
We propose an efficient scheme to perform the multipole-to-local (M2L) translation in the three-dimensional low-frequency fast multipole method (LFFMM). Our strategy is to combine a group of matrix-vector products associated with M2L translation into a matrix-matrix product in order to diminish the memory traffic. For this purpose, we first developed a grouping method (termed as internal blocking) based on the congruent transformations (rotational and reflectional symmetries) of M2L-translators for each target box in the FMM hierarchy (adaptive octree). Next, we considered another method of grouping (termed as external blocking) that was able to handle M2L translations for multiple target boxes collectively by using the translational invariance of the M2L translation. By combining these internal and external blockings, the M2L translation can be performed efficiently whilst preservingthe numerical accuracy exactly. We assessed the proposed blocking scheme numerically and applied it to the boundary integral equation method to solve electromagnetic scattering problems for perfectly electrical conductor. From the numerical results, it was found that the proposed M2L scheme achieved a few times speedup compared to the non-blocking scheme.
Application of A Fast Multipole BIEM for Flow Diffraction from A 3D Body
Institute of Scientific and Technical Information of China (English)
滕斌; 宁德志
2004-01-01
A Fast Multipole Method (FMM) is developed as a numerical approach to the reduction of the computational cost and requirement memory capacity for a large in solving large-scale problems. In this paper it is applied to the boundary integral equation method (BIEM) for current diffraction from arbitrary 3D bodies. The boundary integral equation is discretized by higher order elements, the FMM is applied to avoid the matrix/vector product, and the resulting algebraic equation is solved by the Generalized Conjugate Residual method (GCR). Numerical examination shows that the FMM is more efficient than the direct evaluation method in computational cost and storage of computers.
Fast multipole boundary element analysis of 2D viscoelastic composites with imperfect interfaces
Institute of Scientific and Technical Information of China (English)
无
2010-01-01
A fast multipole boundary element method(FMBEM)is developed for the analysis of 2D linear viscoelastic composites with imperfect viscoelastic interfaces.The transformed fast multipole formulations are established using the time domain method. To simulate the viscoelastic behavior of imperfect interfaces that are frequently encountered in practice,the Kelvin type model is introduced.The FMBEM is further improved by incorporating naturally the interaction among inclusions as well as eliminating the phenomenon of material penetration.Since all the integrals are evaluated analytically,high accuracy and fast convergence of the numerical scheme are obtained.Several numerical examples,including planar viscoelastic composites with a single inclusion or randomly distributed multi-inclusions are presented.The numerical results are compared with the developed analytical solutions,which illustrates that the proposed FMBEM is very efficient in determining the macroscopic viscoelastic behavior of the particle-reinforced composites with the presence of imperfect interfaces.The laboratory measurements of the mixture creep compliance of asphalt concrete are also compared with the prediction by the developed model.
Nitadori, Keigo
2014-01-01
We propose an efficient algorithm for the evaluation of the potential and its gradient of gravitational/electrostatic $N$-body systems, which we call particle mesh multipole method (PMMM or PM$^3$). PMMM can be understood both as an extension of the particle mesh (PM) method and as an optimization of the fast multipole method (FMM).In the former viewpoint, the scalar density and potential held by a grid point are extended to multipole moments and local expansions in $(p+1)^2$ real numbers, where $p$ is the order of expansion. In the latter viewpoint, a hierarchical octree structure which brings its $\\mathcal O(N)$ nature, is replaced with a uniform mesh structure, and we exploit the convolution theorem with fast Fourier transform (FFT) to speed up the calculations. Hence, independent $(p+1)^2$ FFTs with the size equal to the number of grid points are performed. The fundamental idea is common to PPPM/MPE by Shimada et al. (1993) and FFTM by Ong et al. (2003). PMMM differs from them in supporting both the open ...
A Fast Multipole Algorithm with Virtual Cube Partitioning for 3-D Capacitance Extraction
Institute of Scientific and Technical Information of China (English)
YANGZhaozhi; WANGZeyi
2004-01-01
In this paper a fast indirect boundaryelement method based on the multipole algorithm for capacitance extraction of three-dimensional (3-D) geometries, virtual cube multipole algorithm, is described. First,each 2-D boundary element is regarded as a set of particles with charge rather than a single particle, so the relations between the positions of elements themselves are considered instead of the relations between the center-points of the elements, and a new strategy for cube partitioning is introduced. This strategy overcomes the inadequacy of the methods that associating panels to particles, does not need to break up every panel contained in more than one cube, and has higher speed and precision. Next, a new method is proposed to accelerate the potential integration between the panels that are near to each other. Making good use of the similarity in the 2-D boundary integration,the fast potential integral approach decreases the burden of direct potential computing. Experiments confirm that the algorithm is accurate and has nearly linear computational growth as O(nm), where n is the number of panels and rn is the number of conductors. The new algorithm is implemented and the performance is compared with previous algorithms, such as Fastcap2 of MIT, for k×k bus examples.
Periodic boundary conditions and the error-controlled fast multipole method
Energy Technology Data Exchange (ETDEWEB)
Kabadshow, Ivo
2012-08-22
The simulation of pairwise interactions in huge particle ensembles is a vital issue in scientific research. Especially the calculation of long-range interactions poses limitations to the system size, since these interactions scale quadratically with the number of particles. Fast summation techniques like the Fast Multipole Method (FMM) can help to reduce the complexity to O(N). This work extends the possible range of applications of the FMM to periodic systems in one, two and three dimensions with one unique approach. Together with a tight error control, this contribution enables the simulation of periodic particle systems for different applications without the need to know and tune the FMM specific parameters. The implemented error control scheme automatically optimizes the parameters to obtain an approximation for the minimal runtime for a given energy error bound.
Efficient analysis of dielectric radomes using multilevel fast multipole algorithm with CRWG basis
Institute of Scientific and Technical Information of China (English)
无
2008-01-01
A full-wave analysis of the electromagnetic problem of a three-dimensional (3-D) antenna radiating through a 3-D dielectric radome is preserued.The problem is formulated using the Poggio-Miller-Chang-Harrington-Wu(PMCHW) approach for homogeneous dielectric objects and the electric field integral equation for conducting objects.The integral equations are discretized by the method of moment (MoM),in which the conducting and dielectric surface/interfaces are represented by curvilinear triangular patches and the unknown equivalent electric and magnetic currents are expanded using curvilinear RWG basis functions.The resultant matrix equation is then solved by the multilevel fast multipole algorithm (MLFMA) and fast far-field approximation (FAFFA) is used to further accelerate the computation.The radiation patterns of dipole arrays in the presence of radomes are presented.The numerical results demonstrate the accuracy and versatility of this method.
The Fast Multipole Method and Point Dipole Moment Polarizable Force Fields
Coles, Jonathan P
2014-01-01
We present a momentum conserving implementation of the fast multipole method for computing coulombic electrostatic and polarization forces from polarizable force-fields based on induced point dipole moments. We demonstrate the expected $O(N)$ scaling of that approach by performing single energy point calculations on hexamer protein subunits of the mature HIV-1 capsid. We also show the long time energy conservation in molecular dynamics at the nanosecond scale by performing simulations of a protein complex embedded in a coarse-grained solvent using both a standard integrator and a multiple time step one. Our tests show the applicability of FMM combined with state-of-the-art chemical models in molecular dynamical systems.
Institute of Scientific and Technical Information of China (English)
Pan Xiaomin; Sheng Xinqing
2008-01-01
A general and efficient parallel approach is proposed for the first time to parallelize the hybrid finite-element-boundary-integral-multi-level fast multipole algorithm (FE-BI-MLFMA). Among many algorithms of FE-BI-MLFMA, the decomposition algorithm (DA) is chosen as a basis for the parallelization of FE-BI-MLFMA because of its distinct numerical characteristics suitable for parallelization. On the basis of the DA, the parallelization of FE-BI-MLFMA is carried out by employing the parallelized multi-frontal method for the matrix from the finite-element method and the parallelized MLFMA for the matrix from the boundary integral method respectively. The programming and numerical experiments of the proposed parallel approach are carried out in the high perfor-mance computing platform CEMS-Liuhui. Numerical experiments demonstrate that FE-BI-MLFMA is efficiently parallelized and its computational capacity is greatly improved without losing accuracy, efficiency, and generality.
Combining the multilevel fast multipole method with the uniform geometrical theory of diffraction
Directory of Open Access Journals (Sweden)
A. Tzoulis
2005-01-01
Full Text Available The presence of arbitrarily shaped and electrically large objects in the same environment leads to hybridization of the Method of Moments (MoM with the Uniform Geometrical Theory of Diffraction (UTD. The computation and memory complexity of the MoM solution is improved with the Multilevel Fast Multipole Method (MLFMM. By expanding the k-space integrals in spherical harmonics, further considerable amount of memory can be saved without compromising accuracy and numerical speed. However, until now MoM-UTD hybrid methods are restricted to conventional MoM formulations only with Electric Field Integral Equation (EFIE. In this contribution, a MLFMM-UTD hybridization for Combined Field Integral Equation (CFIE is proposed and applied within a hybrid Finite Element - Boundary Integral (FEBI technique. The MLFMM-UTD hybridization is performed at the translation procedure on the various levels of the MLFMM, using a far-field approximation of the corresponding translation operator. The formulation of this new hybrid technique is presented, as well as numerical results.
Petascale molecular dynamics simulation using the fast multipole method on K computer
Ohno, Yousuke
2014-10-01
In this paper, we report all-atom simulations of molecular crowding - a result from the full node simulation on the "K computer", which is a 10-PFLOPS supercomputer in Japan. The capability of this machine enables us to perform simulation of crowded cellular environments, which are more realistic compared to conventional MD simulations where proteins are simulated in isolation. Living cells are "crowded" because macromolecules comprise ∼30% of their molecular weight. Recently, the effects of crowded cellular environments on protein stability have been revealed through in-cell NMR spectroscopy. To measure the performance of the "K computer", we performed all-atom classical molecular dynamics simulations of two systems: target proteins in a solvent, and target proteins in an environment of molecular crowders that mimic the conditions of a living cell. Using the full system, we achieved 4.4 PFLOPS during a 520 million-atom simulation with cutoff of 28 Å. Furthermore, we discuss the performance and scaling of fast multipole methods for molecular dynamics simulations on the "K computer", as well as comparisons with Ewald summation methods. © 2014 Elsevier B.V. All rights reserved.
A Generalized Grid-Based Fast Multipole Method for Integrating Helmholtz Kernels.
Parkkinen, Pauli; Losilla, Sergio A; Solala, Eelis; Toivanen, Elias A; Xu, Wen-Hua; Sundholm, Dage
2017-02-14
A grid-based fast multipole method (GB-FMM) for optimizing three-dimensional (3D) numerical molecular orbitals in the bubbles and cube double basis has been developed and implemented. The present GB-FMM method is a generalization of our recently published GB-FMM approach for numerically calculating electrostatic potentials and two-electron interaction energies. The orbital optimization is performed by integrating the Helmholtz kernel in the double basis. The steep part of the functions in the vicinity of the nuclei is represented by one-center bubbles functions, whereas the remaining cube part is expanded on an equidistant 3D grid. The integration of the bubbles part is treated by using one-center expansions of the Helmholtz kernel in spherical harmonics multiplied with modified spherical Bessel functions of the first and second kind, analogously to the numerical inward and outward integration approach for calculating two-electron interaction potentials in atomic structure calculations. The expressions and algorithms for massively parallel calculations on general purpose graphics processing units (GPGPU) are described. The accuracy and the correctness of the implementation has been checked by performing Hartree-Fock self-consistent-field calculations (HF-SCF) on H2, H2O, and CO. Our calculations show that an accuracy of 10(-4) to 10(-7) Eh can be reached in HF-SCF calculations on general molecules.
Multilevel fast multipole algorithm for elastic wave scattering by large three-dimensional objects
Tong, Mei Song; Chew, Weng Cho
2009-02-01
Multilevel fast multipole algorithm (MLFMA) is developed for solving elastic wave scattering by large three-dimensional (3D) objects. Since the governing set of boundary integral equations (BIE) for the problem includes both compressional and shear waves with different wave numbers in one medium, the double-tree structure for each medium is used in the MLFMA implementation. When both the object and surrounding media are elastic, four wave numbers in total and thus four FMA trees are involved. We employ Nyström method to discretize the BIE and generate the corresponding matrix equation. The MLFMA is used to accelerate the solution process by reducing the complexity of matrix-vector product from O(N2) to O(NlogN) in iterative solvers. The multiple-tree structure differs from the single-tree frame in electromagnetics (EM) and acoustics, and greatly complicates the MLFMA implementation due to the different definitions for well-separated groups in different FMA trees. Our Nyström method has made use of the cancellation of leading terms in the series expansion of integral kernels to handle hyper singularities in near terms. This feature is kept in the MLFMA by seeking the common near patches in different FMA trees and treating the involved near terms synergistically. Due to the high cost of the multiple-tree structure, our numerical examples show that we can only solve the elastic wave scattering problems with 0.3-0.4 millions of unknowns on our Dell Precision 690 workstation using one core.
Ibeid, Huda
2016-03-04
Exascale systems are predicted to have approximately 1 billion cores, assuming gigahertz cores. Limitations on affordable network topologies for distributed memory systems of such massive scale bring new challenges to the currently dominant parallel programing model. Currently, there are many efforts to evaluate the hardware and software bottlenecks of exascale designs. It is therefore of interest to model application performance and to understand what changes need to be made to ensure extrapolated scalability. The fast multipole method (FMM) was originally developed for accelerating N-body problems in astrophysics and molecular dynamics but has recently been extended to a wider range of problems. Its high arithmetic intensity combined with its linear complexity and asynchronous communication patterns make it a promising algorithm for exascale systems. In this paper, we discuss the challenges for FMM on current parallel computers and future exascale architectures, with a focus on internode communication. We focus on the communication part only; the efficiency of the computational kernels are beyond the scope of the present study. We develop a performance model that considers the communication patterns of the FMM and observe a good match between our model and the actual communication time on four high-performance computing (HPC) systems, when latency, bandwidth, network topology, and multicore penalties are all taken into account. To our knowledge, this is the first formal characterization of internode communication in FMM that validates the model against actual measurements of communication time. The ultimate communication model is predictive in an absolute sense; however, on complex systems, this objective is often out of reach or of a difficulty out of proportion to its benefit when there exists a simpler model that is inexpensive and sufficient to guide coding decisions leading to improved scaling. The current model provides such guidance.
Bajaj, Chandrajit; Chen, Shun-Chuan; Rand, Alexander
2011-01-01
In order to compute polarization energy of biomolecules, we describe a boundary element approach to solving the linearized Poisson-Boltzmann equation. Our approach combines several important features including the derivative boundary formulation of the problem and a smooth approximation of the molecular surface based on the algebraic spline molecular surface. State of the art software for numerical linear algebra and the kernel independent fast multipole method is used for both simplicity and efficiency of our implementation. We perform a variety of computational experiments, testing our method on a number of actual proteins involved in molecular docking and demonstrating the effectiveness of our solver for computing molecular polarization energy. PMID:21660123
Łazarski, Roman; Burow, Asbjörn Manfred; Grajciar, Lukáš; Sierka, Marek
2016-10-30
A full implementation of analytical energy gradients for molecular and periodic systems is reported in the TURBOMOLE program package within the framework of Kohn-Sham density functional theory using Gaussian-type orbitals as basis functions. Its key component is a combination of density fitting (DF) approximation and continuous fast multipole method (CFMM) that allows for an efficient calculation of the Coulomb energy gradient. For exchange-correlation part the hierarchical numerical integration scheme (Burow and Sierka, Journal of Chemical Theory and Computation 2011, 7, 3097) is extended to energy gradients. Computational efficiency and asymptotic O(N) scaling behavior of the implementation is demonstrated for various molecular and periodic model systems, with the largest unit cell of hematite containing 640 atoms and 19,072 basis functions. The overall computational effort of energy gradient is comparable to that of the Kohn-Sham matrix formation. © 2016 Wiley Periodicals, Inc.
Fajardo, Kristel C Meza; Chaillat, Stéphanie; Lenti, Luca
2016-01-01
In this work, we study seismic wave amplification in alluvial basins having 3D standard geometries through the Fast Multipole Boundary Element Method in the frequency domain. We investigate how much 3D amplification differs from the 1D (horizontal layering) case. Considering incident fields of plane harmonic waves, we examine the relationships between the amplification level and the most relevant physical parameters of the problem (impedance contrast, 3D aspect ratio, vertical and oblique incidence of plane waves). The FMBEM results show that the most important parameters for wave amplification are the impedance contrast and the so-called equivalent shape ratio. Using these two parameters, we derive simple rules to compute the fundamental frequency for various 3D basin shapes and the corresponding 3D/1D amplification factor for 5% damping. Effects on amplification due to 3D basin asymmetry are also studied and incorporated in the derived rules.
Energy Technology Data Exchange (ETDEWEB)
Poursina, Mohammad [Department of Aerospace and Mechanical Engineering, University of Arizona, Tucson, AZ 85721 (United States); Anderson, Kurt S. [Department of Mechanical, Aerospace and Nuclear Engineering, Rensselaer Polytechnic Institute (RPI), Troy, NY 12180 (United States)
2014-08-01
This paper presents a novel algorithm to approximate the long-range electrostatic potential field in the Cartesian coordinates applicable to 3D coarse-grained simulations of biopolymers. In such models, coarse-grained clusters are formed via treating groups of atoms as rigid and/or flexible bodies connected together via kinematic joints. Therefore, multibody dynamic techniques are used to form and solve the equations of motion of such coarse-grained systems. In this article, the approximations for the potential fields due to the interaction between a highly negatively/positively charged pseudo-atom and charged particles, as well as the interaction between clusters of charged particles, are presented. These approximations are expressed in terms of physical and geometrical properties of the bodies such as the entire charge, the location of the center of charge, and the pseudo-inertia tensor about the center of charge of the clusters. Further, a novel substructuring scheme is introduced to implement the presented far-field potential evaluations in a binary tree framework as opposed to the existing quadtree and octree strategies of implementing fast multipole method. Using the presented Lagrangian grids, the electrostatic potential is recursively calculated via sweeping two passes: assembly and disassembly. In the assembly pass, adjacent charged bodies are combined together to form new clusters. Then, the potential field of each cluster due to its interaction with faraway resulting clusters is recursively calculated in the disassembly pass. The method is highly compatible with multibody dynamic schemes to model coarse-grained biopolymers. Since the proposed method takes advantage of constant physical and geometrical properties of rigid clusters, improvement in the overall computational cost is observed comparing to the tradition application of fast multipole method.
Inexact Krylov iterations and relaxation strategies with fast-multipole boundary element method
Layton, Simon K
2015-01-01
Boundary element methods produce dense linear systems that can be accelerated via multipole expansions. Solved with Krylov methods, this implies computing the matrix-vector products within each iteration with some error, at an accuracy controlled by the order of the expansion, $p$. We take advantage of a unique property of Krylov iterations that allow lower accuracy of the matrix-vector products as convergence proceeds, and propose a relaxation strategy based on progressively decreasing $p$. Via extensive numerical tests, we show that the relaxed Krylov iterations converge with speed-ups of between 2x and 4x for Laplace problems and between 3.5x and 4.5x for Stokes problems. We include an application to Stokes flow around red blood cells, computing with up to 64 cells and problem size up to 131k boundary elements and nearly 400k unknowns. The study was done with an in-house multi-threaded C++ code, on a quad-core CPU.
Fast multipole boundary element method for Helmholtz equation problems%Helmholtz方程问题的快速多极边界元求解方法
Institute of Scientific and Technical Information of China (English)
于海源; 陈一鸣; 于春肖
2012-01-01
In order to overcome the difficulties of low computational efficiency and high memory requirement in the conventional boundary element method for solving large-scale Helmholtz equation problems, a fast multipole boundary element method for the problems of Helmholtz equation is presented. Two theorems are obtained based on the multipole expansion and the local expansion of the boundary element method fundamental solutions'Kernel function. What's more, the basic formulas and the main steps of the fast multipole boundary element method are described for 2D and 3D Helmholtz equation problems.%为了改善传统边界元在求解大规模Helmholtz方程的实际问题时计算效率低、存储量大的缺点,针对快速多极边界元法求解Helmholtz方程进行了理论分析.通过对二维和三维Helmholtz方程的基本解的核函数进行多极展开和局部展开,得到了相应的展开定理,并基于展开定理分别推导了二维和三维问题Helmholtz方程的快速多极边界元计算公式,给出了快速多极边界元法求解Helmholtz方程的主要计算步骤.
Wu, Yueqian; Yang, Minglin; Sheng, Xinqing; Ren, Kuan Fang
2015-05-01
Light scattering properties of absorbing particles, such as the mineral dusts, attract a wide attention due to its importance in geophysical and environment researches. Due to the absorbing effect, light scattering properties of particles with absorption differ from those without absorption. Simple shaped absorbing particles such as spheres and spheroids have been well studied with different methods but little work on large complex shaped particles has been reported. In this paper, the surface Integral Equation (SIE) with Multilevel Fast Multipole Algorithm (MLFMA) is applied to study scattering properties of large non-spherical absorbing particles. SIEs are carefully discretized with piecewise linear basis functions on triangle patches to model whole surface of the particle, hence computation resource needs increase much more slowly with the particle size parameter than the volume discretized methods. To improve further its capability, MLFMA is well parallelized with Message Passing Interface (MPI) on distributed memory computer platform. Without loss of generality, we choose the computation of scattering matrix elements of absorbing dust particles as an example. The comparison of the scattering matrix elements computed by our method and the discrete dipole approximation method (DDA) for an ellipsoid dust particle shows that the precision of our method is very good. The scattering matrix elements of large ellipsoid dusts with different aspect ratios and size parameters are computed. To show the capability of the presented algorithm for complex shaped particles, scattering by asymmetry Chebyshev particle with size parameter larger than 600 of complex refractive index m = 1.555 + 0.004 i and different orientations are studied.
Abduljabbar, Mustafa
2017-07-31
Manycore optimizations are essential for achieving performance worthy of anticipated exascale systems. Utilization of manycore chips is inevitable to attain the desired floating point performance of these energy-austere systems. In this work, we revisit ExaFMM, the open source Fast Multiple Method (FMM) library, in light of highly tuned shared-memory parallelization and detailed performance analysis on the new highly parallel Intel manycore architecture, Knights Landing (KNL). We assess scalability and performance gain using task-based parallelism of the FMM tree traversal. We also provide an in-depth analysis of the most computationally intensive part of the traversal kernel (i.e., the particle-to-particle (P2P) kernel), by comparing its performance across KNL and Broadwell architectures. We quantify different configurations that exploit the on-chip 512-bit vector units within different task-based threading paradigms. MPI communication-reducing and NUMA-aware approaches for the FMM’s global tree data exchange are examined with different cluster modes of KNL. By applying several algorithm- and architecture-aware optimizations for FMM, we show that the N-Body kernel on 256 threads of KNL achieves on average 2.8× speedup compared to the non-vectorized version, whereas on 56 threads of Broadwell, it achieves on average 2.9× speedup. In addition, the tree traversal kernel on KNL scales monotonically up to 256 threads with task-based programming models. The MPI-based communication-reducing algorithms show expected improvements of the data locality across the KNL on-chip network.
Fast Multipole Methods for Three-Dimensional N-body Problems
Koumoutsakos, P.
1995-01-01
We are developing computational tools for the simulations of three-dimensional flows past bodies undergoing arbitrary motions. High resolution viscous vortex methods have been developed that allow for extended simulations of two-dimensional configurations such as vortex generators. Our objective is to extend this methodology to three dimensions and develop a robust computational scheme for the simulation of such flows. A fundamental issue in the use of vortex methods is the ability of employing efficiently large numbers of computational elements to resolve the large range of scales that exist in complex flows. The traditional cost of the method scales as Omicron (N(sup 2)) as the N computational elements/particles induce velocities at each other, making the method unacceptable for simulations involving more than a few tens of thousands of particles. In the last decade fast methods have been developed that have operation counts of Omicron (N log N) or Omicron (N) (referred to as BH and GR respectively) depending on the details of the algorithm. These methods are based on the observation that the effect of a cluster of particles at a certain distance may be approximated by a finite series expansion. In order to exploit this observation we need to decompose the element population spatially into clusters of particles and build a hierarchy of clusters (a tree data structure) - smaller neighboring clusters combine to form a cluster of the next size up in the hierarchy and so on. This hierarchy of clusters allows one to determine efficiently when the approximation is valid. This algorithm is an N-body solver that appears in many fields of engineering and science. Some examples of its diverse use are in astrophysics, molecular dynamics, micro-magnetics, boundary element simulations of electromagnetic problems, and computer animation. More recently these N-body solvers have been implemented and applied in simulations involving vortex methods. Koumoutsakos and Leonard (1995
Fast Link Adaptation for MIMO-OFDM
DEFF Research Database (Denmark)
Jensen, Tobias Lindstrøm; Kant, Shashi; Wehinger, Joachim;
2010-01-01
We investigate link-quality metrics (LQMs) based on raw bit-error-rate, effective signal-to-interference-plus-noise ratio, and mutual information (MI) for the purpose of fast link adaptation (LA) in communication systems employing orthogonal frequency-division multiplexing and multiple-input–mult......We investigate link-quality metrics (LQMs) based on raw bit-error-rate, effective signal-to-interference-plus-noise ratio, and mutual information (MI) for the purpose of fast link adaptation (LA) in communication systems employing orthogonal frequency-division multiplexing and multiple...
Jiang, Xikai; Zhao, Xujun; Qin, Jian; Karpeev, Dmitry; Hernandez-Ortiz, Juan; de Pablo, Juan; Heinonen, Olle
2016-01-01
Large classes of materials systems in physics and engineering are governed by magnetic and electrostatic interactions. Continuum or mesoscale descriptions of such systems can be cast in terms of integral equations, whose direct computational evaluation requires O(N^2) operations, where N is the number of unknowns. Such a scaling, which arises from the many-body nature of the relevant Green's function, has precluded wide-spread adoption of integral methods for solution of large-scale scientific and engineering problems. In this work, a parallel computational approach is presented that relies on using scalable open source libraries and utilizes a kernel-independent Fast Multipole Method to evaluate the integrals in O(N) operations, with O(N) memory cost, thereby substantially improving the scalability and efficiency of computational integral methods. We demonstrate the accuracy, efficiency, and scalability of our approach in the contest of two examples. In the first, we solve a boundary value problem for a ferr...
Fast adaptive elliptical filtering using box splines
Chaudhury, Kunal Narayan; Unser, Michael
2009-01-01
We demonstrate that it is possible to filter an image with an elliptic window of varying size, elongation and orientation with a fixed computational cost per pixel. Our method involves the application of a suitable global pre-integrator followed by a pointwise-adaptive localization mesh. We present the basic theory for the 1D case using a B-spline formalism and then appropriately extend it to 2D using radially-uniform box splines. The size and ellipticity of these radially-uniform box splines is adaptively controlled. Moreover, they converge to Gaussians as the order increases. Finally, we present a fast and practical directional filtering algorithm that has the capability of adapting to the local image features.
Adaptive line enhancers for fast acquisition
Yeh, H.-G.; Nguyen, T. M.
1994-01-01
Three adaptive line enhancer (ALE) algorithms and architectures - namely, conventional ALE, ALE with double filtering, and ALE with coherent accumulation - are investigated for fast carrier acquisition in the time domain. The advantages of these algorithms are their simplicity, flexibility, robustness, and applicability to general situations including the Earth-to-space uplink carrier acquisition and tracking of the spacecraft. In the acquisition mode, these algorithms act as bandpass filters; hence, the carrier-to-noise ratio (CNR) is improved for fast acquisition. In the tracking mode, these algorithms simply act as lowpass filters to improve signal-to-noise ratio; hence, better tracking performance is obtained. It is not necessary to have a priori knowledge of the received signal parameters, such as CNR, Doppler, and carrier sweeping rate. The implementation of these algorithms is in the time domain (as opposed to the frequency domain, such as the fast Fourier transform (FFT)). The carrier frequency estimation can be updated in real time at each time sample (as opposed to the batch processing of the FFT). The carrier frequency to be acquired can be time varying, and the noise can be non-Gaussian, nonstationary, and colored.
Jiang, Xikai; Li, Jiyuan; Zhao, Xujun; Qin, Jian; Karpeev, Dmitry; Hernandez-Ortiz, Juan; de Pablo, Juan J.; Heinonen, Olle
2016-08-01
Large classes of materials systems in physics and engineering are governed by magnetic and electrostatic interactions. Continuum or mesoscale descriptions of such systems can be cast in terms of integral equations, whose direct computational evaluation requires O(N2) operations, where N is the number of unknowns. Such a scaling, which arises from the many-body nature of the relevant Green's function, has precluded wide-spread adoption of integral methods for solution of large-scale scientific and engineering problems. In this work, a parallel computational approach is presented that relies on using scalable open source libraries and utilizes a kernel-independent Fast Multipole Method (FMM) to evaluate the integrals in O(N) operations, with O(N) memory cost, thereby substantially improving the scalability and efficiency of computational integral methods. We demonstrate the accuracy, efficiency, and scalability of our approach in the context of two examples. In the first, we solve a boundary value problem for a ferroelectric/ferromagnetic volume in free space. In the second, we solve an electrostatic problem involving polarizable dielectric bodies in an unbounded dielectric medium. The results from these test cases show that our proposed parallel approach, which is built on a kernel-independent FMM, can enable highly efficient and accurate simulations and allow for considerable flexibility in a broad range of applications.
Gumerov, Nail A; O'Donovan, Adam E; Duraiswami, Ramani; Zotkin, Dmitry N
2010-01-01
The head-related transfer function (HRTF) is computed using the fast multipole accelerated boundary element method. For efficiency, the HRTF is computed using the reciprocity principle by placing a source at the ear and computing its field. Analysis is presented to modify the boundary value problem accordingly. To compute the HRTF corresponding to different ranges via a single computation, a compact and accurate representation of the HRTF, termed the spherical spectrum, is developed. Computations are reduced to a two stage process, the computation of the spherical spectrum and a subsequent evaluation of the HRTF. This representation allows easy interpolation and range extrapolation of HRTFs. HRTF computations are performed for the range of audible frequencies up to 20 kHz for several models including a sphere, human head models [the Neumann KU-100 ("Fritz") and the Knowles KEMAR ("Kemar") manikins], and head-and-torso model (the Kemar manikin). Comparisons between the different cases are provided. Comparisons with the computational data of other authors and available experimental data are conducted and show satisfactory agreement for the frequencies for which reliable experimental data are available. Results show that, given a good mesh, it is feasible to compute the HRTF over the full audible range on a regular personal computer.
Motion Tracking with Fast Adaptive Background Subtraction
Institute of Scientific and Technical Information of China (English)
Xiao; De-Gui; Yu; Sheng-sheng; 等
2003-01-01
To extract and track moving objects is usually one of the most important tasks of intelligent video surveillance systems. This paper presents a fast and adaptive background subtraction algorithm and the motion tracking process using this algorithm. The algorithm uses only luminance components of sampled image sequence pixels and models every pixel in a statistical model.The algorithm is characterized by its ability of real time detecting sudden lighting changes, and extracting and tracking motion objects faster. It is shown that our algorithm can be realized with lower time and space complexity and adjustable object detection error rate with comparison to other background subtraction algorithms. Making use of the algorithm, an indoor monitoring system is also worked out and the motion tracking process is presented in this paper.Experimental results testify the algorithms' good performances when used in an indoor monitoring system.
Huijssen, Jacobus; Fiala, Péter; Hallez, Raphael; Donders, Stijn; Desmet, Wim
2012-04-01
The Fast Multipole Boundary Element Method (FMBEM) is adopted for the numerical evaluation of source-receiver transfer functions for predicting ISO-362 pass-by noise levels of automotive vehicles. The pass-by noise configuration is discussed, as well as the FMBEM approach to evaluate the transfer functions in the frequency domain. An amplitude/phase frequency interpolation scheme with a geometrically based phase unwrapping scheme is presented that enables the long time frame reconstruction of the impulse responses from coarsely sampled frequency response functions. The performance of the interpolation scheme is compared to other schemes for 12 frequency response functions obtained from measurements on a passenger vehicle in a semi-anechoic room, and a sampling and interpolation scheme is proposed that yields a mean error of 0.5 dB in the third octave band SPLs. Several parameters related to the simulation method, the most important of which is the density of the BEM surface mesh, are investigated for their influence on the trade-off between accuracy and evaluation time. Guidelines for selecting these parameters are presented which can be used to predict sound pressure levels and third octave band levels up to the 2 kHz third octave band. Compared to more accurate simulations, these guidelines result in an average approximation error in the transfer functions of 1.3 dB in the third octave band SPLs while considerably reducing the evaluation time. Comparison of the simulated and the measured transfer functions show an average error of 4 dB in the third octave band SPLs.
Institute of Scientific and Technical Information of China (English)
左风丽; 刘旭; 张宝印; 胡晓燕
2013-01-01
A parallel software module of FMM ( fast multipole method) for three-dimensional Laplace kernel functions, JASMIN-3DLapFMM, is designed and implemented. The module is based on two phases parallel strategy of both processes and threads. A parallel software module is successfully used to solve the far field potential of electrostatic fields. With a fixed problem size of single processor,almost linear weak parallel scalability is obtained for a grand scale problem with 10 particles on more than ten thousand processors. With a fixed size of total problem and 1 024 processors, about three times speedup is obtained on four threads.%在JASMIN上,基于进程/线程两级并行实现策略,研制三维Laplace核函数FMM (fast multipole method)的解法器模块“JASMIN-3DLapFMM”.该解法器已成功应用于三维静电场远场势的并行计算.固定单机问题规模,在上万个处理器核上运行百亿粒子的大规模问题,获得进程级几乎线性的并行可扩展性.固定总的问题规模和1 024个进程,4个线程时,获得大约3倍的加速.
Sox17 regulates liver lipid metabolism and adaptation to fasting.
Rommelaere, Samuel; Millet, Virginie; Vu Manh, Thien-Phong; Gensollen, Thomas; Andreoletti, Pierre; Cherkaoui-Malki, Mustapha; Bourges, Christophe; Escalière, Bertrand; Du, Xin; Xia, Yu; Imbert, Jean; Beutler, Bruce; Kanai, Yoshiakira; Malissen, Bernard; Malissen, Marie; Tailleux, Anne; Staels, Bart; Galland, Franck; Naquet, Philippe
2014-01-01
Liver is a major regulator of lipid metabolism and adaptation to fasting, a process involving PPARalpha activation. We recently showed that the Vnn1 gene is a PPARalpha target gene in liver and that release of the Vanin-1 pantetheinase in serum is a biomarker of PPARalpha activation. Here we set up a screen to identify new regulators of adaptation to fasting using the serum Vanin-1 as a marker of PPARalpha activation. Mutagenized mice were screened for low serum Vanin-1 expression. Functional interactions with PPARalpha were investigated by combining transcriptomic, biochemical and metabolic approaches. We characterized a new mutant mouse in which hepatic and serum expression of Vanin-1 is depressed. This mouse carries a mutation in the HMG domain of the Sox17 transcription factor. Mutant mice display a metabolic phenotype featuring lipid abnormalities and inefficient adaptation to fasting. Upon fasting, a fraction of the PPARα-driven transcriptional program is no longer induced and associated with impaired fatty acid oxidation. The transcriptional phenotype is partially observed in heterozygous Sox17+/- mice. In mutant mice, the fasting phenotype but not all transcriptomic signature is rescued by the administration of the PPARalpha agonist fenofibrate. These results identify a novel role for Sox17 in adult liver as a modulator of the metabolic adaptation to fasting.
Sox17 regulates liver lipid metabolism and adaptation to fasting.
Directory of Open Access Journals (Sweden)
Samuel Rommelaere
Full Text Available Liver is a major regulator of lipid metabolism and adaptation to fasting, a process involving PPARalpha activation. We recently showed that the Vnn1 gene is a PPARalpha target gene in liver and that release of the Vanin-1 pantetheinase in serum is a biomarker of PPARalpha activation. Here we set up a screen to identify new regulators of adaptation to fasting using the serum Vanin-1 as a marker of PPARalpha activation. Mutagenized mice were screened for low serum Vanin-1 expression. Functional interactions with PPARalpha were investigated by combining transcriptomic, biochemical and metabolic approaches. We characterized a new mutant mouse in which hepatic and serum expression of Vanin-1 is depressed. This mouse carries a mutation in the HMG domain of the Sox17 transcription factor. Mutant mice display a metabolic phenotype featuring lipid abnormalities and inefficient adaptation to fasting. Upon fasting, a fraction of the PPARα-driven transcriptional program is no longer induced and associated with impaired fatty acid oxidation. The transcriptional phenotype is partially observed in heterozygous Sox17+/- mice. In mutant mice, the fasting phenotype but not all transcriptomic signature is rescued by the administration of the PPARalpha agonist fenofibrate. These results identify a novel role for Sox17 in adult liver as a modulator of the metabolic adaptation to fasting.
Fast-start adaptation funding: keeping promises from Copenhagen
Energy Technology Data Exchange (ETDEWEB)
Ciplet, David; Roberts, J. Timmons [Brown University (United States); Chandani, Achala; Huq, Saleemul
2010-11-15
The most concrete commitment to come out of the international climate negotiations in Copenhagen was US$30 billion dollars in 'fast-start climate finance' to developing countries, with balanced support for both mitigation and adaptation. Fast-start adaptation finance, in particular, is crusial for poor countries facing rapid climate change. But so far, pledges for adaptation from developed countries have been inadequate and unclear. This briefing outlines ways for the Cancun negotiations to address five crucial issues for adaptation finance: (1) the amount and type of funding being offered, (2) the definition of adaptation, (3) global oversight and accounting, (4) a clear baseline and transparent spending and (5) the channel for delivering funds.
Energy Technology Data Exchange (ETDEWEB)
Lim, T.
2011-04-28
To simulate numerically a non-destructive by eddy current testing (NDT-CF), the sensor response can be modeled through a semi-analytical approach by volume integral equations. Faster than the finite element method, this approach is however restricted to the study of plane or cylindrical parts (without taking into account the edge effects) because of the complexity of the expression of the dyadic Green function for more general configurations. However, there is an industrial demand to extend the capabilities of the CF model in complex configurations (deformed plates, edges effects...). We were thus brought to formulate the electromagnetic problem differently, by setting ourselves the goal of maintaining a semi-analytical approach. The surface integral equation (SIE) expresses the volume problem by an equivalent transmission one at the interfaces (2D) between homogeneous sub-domains. This problem is approached by a linear system (by the method of moments), whose number of unknowns is reduced due to the nature of the surfacic mesh. Therefore, this system can be solved by a direct solver for small configurations. That enabled us to treat several various positions of the sensor for only one inversion of the impedance matrix. The numerical results obtained using this formulation involve plates with consideration of edge effects such as edge and corner. They are consistent with results obtained by the finite element method. For larger configurations, we conducted a preliminary study for the adaptation of an acceleration method of the matrix vector product involved in an iterative solver (fast multipole method or FMM) to define the conditions under which the FMM calculation works correctly (accuracy, convergence...) in the NDT's domain. A special attention has been given to the choice of basis functions (which have to satisfy an Hdiv conforming property) and on the evaluation of near interactions (which are weakly singular). (author) [French] Pour simuler
Information criterion based fast PCA adaptive algorithm
Institute of Scientific and Technical Information of China (English)
Li Jiawen; Li Congxin
2007-01-01
The novel information criterion (NIC) algorithm can find the principal subspace quickly, but it is not an actual principal component analysis (PCA) algorithm and hence it cannot find the orthonormal eigen-space which corresponds to the principal component of input vector.This defect limits its application in practice.By weighting the neural network's output of NIC, a modified novel information criterion (MNIC) algorithm is presented.MNIC extractes the principal components and corresponding eigenvectors in a parallel online learning program, and overcomes the NIC's defect.It is proved to have a single global optimum and nonquadratic convergence rate, which is superior to the conventional PCA online algorithms such as Oja and LMSER.The relationship among Oja, LMSER and MNIC is exhibited.Simulations show that MNIC could converge to the optimum fast.The validity of MNIC is proved.
Institute of Scientific and Technical Information of China (English)
崔晓兵; 季振林
2011-01-01
To solve the large scale sound field problems with multi-domain and multi-absorbing materials, a substructure fast multipole boundary element approach was developed. In view of the fact that the arrangement order of an unknown column vector and the node number affected the speed of convergence, a principle was proposed to compose the whole matrix equation. Additionally, in light of the accuracy effect of multipole expansion computation caused by the complex acoustic parameters, some studies and corrections were conducted on the fast multipole boundary element method (FMBEM). As an example of application, the transmission loss of a dissipative expansion chamber silencer was calculated by using the substructure FMBEM and the conventional boundary element method (CBEM). The results indicate that the present approach and corrections are valid. Compared to the CBEM, the advantage of substructure FMBEM in computational efficiency was more obvious as the number of boundary nodes increased for a given frequency.%为解决大尺度声场中常见的多区域复合及多吸声材料复合问题,提出了一种子结构快速多极子边界元法.鉴于未知量列向量的构建次序及边界节点编号顺序对迭代收敛速度有重要影响,提出了整体矩阵方程的构建原则.此外,针对复数形式声参数对多极子展开式计算准确性的影响,对快速多极子边界元法进行了研究与修正.以膨胀腔阻性消声器为例,应用子结构快速多极子边界元法与传统边界元法计算其传递损失.结果表明,该方法与修正是有效的,而且在某给定频率下,随着边界未知节点数的增大,其相对于传统边界元法在计算效率方面的优势越来越明显.
Fast Adaptive Beamforming with Smart Antenna for Radio Frequency Repeater
Directory of Open Access Journals (Sweden)
Wang Chaoqun
2016-01-01
Full Text Available We present a fast adaptive beamforming null algorithm with smart antenna for Radio Frequency Repeater (RFR. The smart antenna system is realized by a Direction Of Arrival (DOA Estimator, whose output is used by an adaptive beamforming algorithm to shape a suitable radiation pattern of the equivalent antenna; so that the co-channel interference due to retransmitting antenna can be reduced. The proposed adaptive beamforming algorithm, which has been proved by formulaic analysis and simulation, has a lower computation complexity yet better performance.
An Optimal Control Modification to Model-Reference Adaptive Control for Fast Adaptation
Nguyen, Nhan T.; Krishnakumar, Kalmanje; Boskovic, Jovan
2008-01-01
This paper presents a method that can achieve fast adaptation for a class of model-reference adaptive control. It is well-known that standard model-reference adaptive control exhibits high-gain control behaviors when a large adaptive gain is used to achieve fast adaptation in order to reduce tracking error rapidly. High gain control creates high-frequency oscillations that can excite unmodeled dynamics and can lead to instability. The fast adaptation approach is based on the minimization of the squares of the tracking error, which is formulated as an optimal control problem. The necessary condition of optimality is used to derive an adaptive law using the gradient method. This adaptive law is shown to result in uniform boundedness of the tracking error by means of the Lyapunov s direct method. Furthermore, this adaptive law allows a large adaptive gain to be used without causing undesired high-gain control effects. The method is shown to be more robust than standard model-reference adaptive control. Simulations demonstrate the effectiveness of the proposed method.
Latina, A
2012-01-01
The electromagnetic radio-frequency (RF) field of accelerating structures and crab-cavities can exhibit transverse field components due to asymmetries in the azimuthal direction of the element geometry. Tracking simulations must be performed to evaluate the impact of such transverse RF deflections on the beam dynamics. In an ultra-relativistic regime where the Panofsky-Wenzel theorem is applicable, these RF deflections can be modeled via a multipolar expansion of the generating RF field similarly to what is done with static magnetic elements. The element implementing such RF multipolar fields has been called RF multipole. In this note we present an analytical formulation of a thin RF multipole Hamiltonian, and we explicitly calculate the RF kick and the elements of its first- and second- order transfer matrices. Also, we present the implementation of the corresponding code in MAD-X, plus some tests of tracking, simplecticity, consistency, and reflected maps that we successfully applied to verify the correctne...
Adaptive synthesis of a wavelet transform using fast neural network
J. Stolarek
2011-01-01
This paper introduces a new method for an adaptive synthesis of a wavelet transform using a fast neural network with a topology based on the lattice structure. The lattice structure and the orthogonal lattice structure are presented and their properties are discussed. A novel method for unsupervised training of the neural network is introduced. The proposed approach is tested by synthesizing new wavelets with an expected energy distribution between low- and high-pass filters. Energy compactio...
A Fast Adaptive Receive Antenna Selection Method in MIMO System
Directory of Open Access Journals (Sweden)
Chaowei Wang
2013-01-01
Full Text Available Antenna selection has been regarded as an effective method to acquire the diversity benefits of multiple antennas while potentially reduce hardware costs. This paper focuses on receive antenna selection. According to the proportion between the numbers of total receive antennas and selected antennas and the influence of each antenna on system capacity, we propose a fast adaptive antenna selection algorithm for wireless multiple-input multiple-output (MIMO systems. Mathematical analysis and numerical results show that our algorithm significantly reduces the computational complexity and memory requirement and achieves considerable system capacity gain compared with the optimal selection technique in the same time.
Fast complex memory polynomial-based adaptive digital predistorter
Singh Sappal, Amandeep; Singh Patterh, Manjeet; Sharma, Sanjay
2011-07-01
Today's 3G wireless systems require both high linearity and high power amplifier (PA) efficiency. The high peak-to-average ratios of the digital modulation schemes used in 3G wireless systems require that the RF PA maintain high linearity over a large range while maintaining this high efficiency; these two requirements are often at odds with each other with many of the traditional amplifier architectures. In this article, a fast and easy-to-implement adaptive digital predistorter has been presented for Wideband Code Division Multiplexed signals using complex memory polynomial work function. The proposed algorithm has been implemented to test a Motorola LDMOSFET PA. The proposed technique also takes care of the memory effects of the PA, which have been ignored in many proposed techniques in the literature. The results show that the new complex memory polynomial-based adaptive digital predistorter has better linearisation performance than conventional predistortion techniques.
Distributed Adaptive Binary Quantization for Fast Nearest Neighbor Search.
Liu, Xianglong; Li, Zhujin; Deng, Cheng; Tao, Dacheng
2017-11-01
Hashing has been proved an attractive technique for fast nearest neighbor search over big data. Compared with the projection based hashing methods, prototype-based ones own stronger power to generate discriminative binary codes for the data with complex intrinsic structure. However, existing prototype-based methods, such as spherical hashing and K-means hashing, still suffer from the ineffective coding that utilizes the complete binary codes in a hypercube. To address this problem, we propose an adaptive binary quantization (ABQ) method that learns a discriminative hash function with prototypes associated with small unique binary codes. Our alternating optimization adaptively discovers the prototype set and the code set of a varying size in an efficient way, which together robustly approximate the data relations. Our method can be naturally generalized to the product space for long hash codes, and enjoys the fast training linear to the number of the training data. We further devise a distributed framework for the large-scale learning, which can significantly speed up the training of ABQ in the distributed environment that has been widely deployed in many areas nowadays. The extensive experiments on four large-scale (up to 80 million) data sets demonstrate that our method significantly outperforms state-of-the-art hashing methods, with up to 58.84% performance gains relatively.
Fast and Adaptive Lossless Onboard Hyperspectral Data Compression System
Aranki, Nazeeh I.; Keymeulen, Didier; Kimesh, Matthew A.
2012-01-01
Modern hyperspectral imaging systems are able to acquire far more data than can be downlinked from a spacecraft. Onboard data compression helps to alleviate this problem, but requires a system capable of power efficiency and high throughput. Software solutions have limited throughput performance and are power-hungry. Dedicated hardware solutions can provide both high throughput and power efficiency, while taking the load off of the main processor. Thus a hardware compression system was developed. The implementation uses a field-programmable gate array (FPGA). The implementation is based on the fast lossless (FL) compression algorithm reported in Fast Lossless Compression of Multispectral-Image Data (NPO-42517), NASA Tech Briefs, Vol. 30, No. 8 (August 2006), page 26, which achieves excellent compression performance and has low complexity. This algorithm performs predictive compression using an adaptive filtering method, and uses adaptive Golomb coding. The implementation also packetizes the coded data. The FL algorithm is well suited for implementation in hardware. In the FPGA implementation, one sample is compressed every clock cycle, which makes for a fast and practical realtime solution for space applications. Benefits of this implementation are: 1) The underlying algorithm achieves a combination of low complexity and compression effectiveness that exceeds that of techniques currently in use. 2) The algorithm requires no training data or other specific information about the nature of the spectral bands for a fixed instrument dynamic range. 3) Hardware acceleration provides a throughput improvement of 10 to 100 times vs. the software implementation. A prototype of the compressor is available in software, but it runs at a speed that does not meet spacecraft requirements. The hardware implementation targets the Xilinx Virtex IV FPGAs, and makes the use of this compressor practical for Earth satellites as well as beyond-Earth missions with hyperspectral instruments.
Multipole Expansion in Generalized Electrodynamics
Bonin, C A; Ortega, P H
2016-01-01
In this article we study some classical aspects of Podolsky Electrodynamics in the static regime. We develop the multipole expansion for the theory in both the electrostatic and the magnetostatic cases. We also address the problem of consistently truncating the infinite series associated with the several kinds of multipoles, yielding approximations for the static Podolskian electromagnetic field to any degree of precision required. Moreover, we apply the general theory of multipole expansion to some specific physical problems. In those problems we identify the first terms of the series with the monopole, dipole and quadrupole terms in the generalized theory. We also propose a situation in which Podolsky theory can be experimentally tested.
Fast Adaptive Wavelet for Remote Sensing Image Compression
Institute of Scientific and Technical Information of China (English)
Bo Li; Run-Hai Jiao; Yuan-Cheng Li
2007-01-01
Remote sensing images are hard to achieve high compression ratio because of their rich texture. By analyzing the influence of wavelet properties on image compression, this paper proposes wavelet construction rules and builds a new biorthogonal wavelet construction model with parameters. The model parameters are optimized by using genetic algorithm and adopting energy compaction as the optimization object function. In addition, in order to resolve the computation complexity problem of online construction, according to the image classification rule proposed in this paper we construct wavelets for different classes of images and implement the fast adaptive wavelet selection algorithm (FAWS). Experimental results show wavelet bases of FAWS gain better compression performance than Daubechies9/7.
Two-center-multipole expansion method: application to macromolecular systems
DEFF Research Database (Denmark)
Solov'yov, Ilia; Yakubovich, Alexander V.; Solov'yov, Andrey V.;
2007-01-01
We propose a theoretical method for the calculation of the interaction energy between macromolecular systems at large distances. The method provides a linear scaling of the computing time with the system size and is considered as an alternative to the well-known fast multipole method. Its...
On the dynamic toroidal multipoles
Fernandez-Corbaton, Ivan; Rockstuhl, Carsten
2015-01-01
Toroidal multipoles are attracting research attention, particularly in the field of metamaterials. They are often understood as a multipolar family in its own right. The dynamic toroidal multipoles emerge from the separation of one of the two transverse multipoles into two parts, referred to as electric and toroidal. Here, we establish that the dynamic toroidal multipolar components of an electric current distribution cannot be determined by measuring the radiation from the source or its coupling to external electromagnetic waves. We analytically show how the split into electric and toroidal parts causes the appearance of non-radiative components in each of the two parts, which cancel when summed back together. The toroidal multipoles do not have an independent meaning with respect to their interaction with the radiation field. Their formal meaning is clear, however. They are the higher order terms of an expansion of the multipolar coefficients of electric parity with respect to the electromagnetic size of th...
Study of a new fast adaptive filtering algorithm
Institute of Scientific and Technical Information of China (English)
WANG Zhen-li; ZHANG Xiong-wei; YANG Ji-bin; CHEN Gong
2006-01-01
A new fast adaptive filtering algorithm was presented by using the correlations between the signal's former and latter sampling times.The proof of the new algorithm was also presented,which showed that its optimal weight vector was the solution of generalized Wiener equation.The new algorithm was of simple structure,fast convergence,and less stable maladjustment.It can handle many signals including both uncorrelated signal and strong correlation signal.However,its computational complexity was comparable to that of the normalized least-mean-square (NLMS) algorithm.Simulation results show that for uncorrelated signals,the stable maladjustment of the proposed algorithm is less than that of the VS-NLMS algorithm,and its convergence is comparable to that of the algorithm proposed in references but faster than that of L.E-LMS algorithm.For strong correlation signal,its performance is superior to those of the NLMS algorithm and DCR-LMS algorithm.
Multipole structure of compact objects
Quevedo, Hernando
2016-01-01
We analyze the applications of general relativity in relativistic astrophysics in order to solve the problem of describing the geometric and physical properties of the interior and exterior gravitational and electromagnetic fields of compact objects. We focus on the interpretation of exact solutions of Einstein's equations in terms of their multipole moments structure. In view of the lack of physical interior solutions, we propose an alternative approach in which higher multipoles should be taken into account.
Center of Mass-Based Adaptive Fast Block Motion Estimation
Directory of Open Access Journals (Sweden)
Yeh Kuo-Liang
2007-01-01
Full Text Available This work presents an efficient adaptive algorithm based on center of mass (CEM for fast block motion estimation. Binary transform, subsampling, and horizontal/vertical projection techniques are also proposed. As the conventional CEM calculation is computationally intensive, binary transform and subsampling approaches are proposed to simplify CEM calculation; the binary transform center of mass (BITCEM is then derived. The BITCEM motion types are classified by percentage of (0,0 BITCEM motion vectors. Adaptive search patterns are allocated according to the BITCEM moving direction and the BITCEM motion type. Moreover, the BITCEM motion vector is utilized as the initial search point for near-still or slow BITCEM motion types. To support the variable block sizes, the horizontal/vertical projections of a binary transformed macroblock are utilized to determine whether the block requires segmentation. Experimental results indicate that the proposed algorithm is better than the five conventional algorithms, that is, three-step search (TSS, new three-step search (N3SS, four three-step search (4SS, block-based gradient decent search (BBGDS, and diamond search (DS, in terms of speed or picture quality for eight benchmark sequences.
Fast, multiphase volume adaptation to hyperosmotic shock by Escherichia coli.
Directory of Open Access Journals (Sweden)
Teuta Pilizota
Full Text Available All living cells employ an array of different mechanisms to help them survive changes in extra cellular osmotic pressure. The difference in the concentration of chemicals in a bacterium's cytoplasm and the external environment generates an osmotic pressure that inflates the cell. It is thought that the bacterium Escherichia coli use a number of interconnected systems to adapt to changes in external pressure, allowing them to maintain turgor and live in surroundings that range more than two-hundred-fold in external osmolality. Here, we use fluorescence imaging to make the first measurements of cell volume changes over time during hyperosmotic shock and subsequent adaptation on a single cell level in vivo with a time resolution on the order of seconds. We directly observe two previously unseen phases of the cytoplasmic water efflux upon hyperosmotic shock. Furthermore, we monitor cell volume changes during the post-shock recovery and observe a two-phase response that depends on the shock magnitude. The initial phase of recovery is fast, on the order of 15-20 min and shows little cell-to-cell variation. For large sucrose shocks, a secondary phase that lasts several hours adds to the recovery. We find that cells are able to recover fully from shocks as high as 1 Osmol/kg using existing systems, but that for larger shocks, protein synthesis is required for full recovery.
Center of Mass-Based Adaptive Fast Block Motion Estimation
Directory of Open Access Journals (Sweden)
Po-Hung Chen
2007-03-01
Full Text Available This work presents an efficient adaptive algorithm based on center of mass (CEM for fast block motion estimation. Binary transform, subsampling, and horizontal/vertical projection techniques are also proposed. As the conventional CEM calculation is computationally intensive, binary transform and subsampling approaches are proposed to simplify CEM calculation; the binary transform center of mass (BITCEM is then derived. The BITCEM motion types are classified by percentage of (0,0 BITCEM motion vectors. Adaptive search patterns are allocated according to the BITCEM moving direction and the BITCEM motion type. Moreover, the BITCEM motion vector is utilized as the initial search point for near-still or slow BITCEM motion types. To support the variable block sizes, the horizontal/vertical projections of a binary transformed macroblock are utilized to determine whether the block requires segmentation. Experimental results indicate that the proposed algorithm is better than the five conventional algorithms, that is, three-step search (TSS, new three-step search (N3SS, four three-step search (4SS, block-based gradient decent search (BBGDS, and diamond search (DS, in terms of speed or picture quality for eight benchmark sequences.
Fast Adaptive Blind MMSE Equalizer for Multichannel FIR Systems
Directory of Open Access Journals (Sweden)
Abed-Meraim Karim
2006-01-01
Full Text Available We propose a new blind minimum mean square error (MMSE equalization algorithm of noisy multichannel finite impulse response (FIR systems, that relies only on second-order statistics. The proposed algorithm offers two important advantages: a low computational complexity and a relative robustness against channel order overestimation errors. Exploiting the fact that the columns of the equalizer matrix filter belong both to the signal subspace and to the kernel of truncated data covariance matrix, the proposed algorithm achieves blindly a direct estimation of the zero-delay MMSE equalizer parameters. We develop a two-step procedure to further improve the performance gain and control the equalization delay. An efficient fast adaptive implementation of our equalizer, based on the projection approximation and the shift invariance property of temporal data covariance matrix, is proposed for reducing the computational complexity from to , where is the number of emitted signals, the data vector length, and the dimension of the signal subspace. We then derive a statistical performance analysis to compare the equalization performance with that of the optimal MMSE equalizer. Finally, simulation results are provided to illustrate the effectiveness of the proposed blind equalization algorithm.
Fast-adaptive near-lossless image compression
He, Kejing
2016-05-01
The purpose of image compression is to store or transmit image data efficiently. However, most compression methods emphasize the compression ratio rather than the throughput. We propose an encoding process and rules, and consequently a fast-adaptive near-lossless image compression method (FAIC) with good compression ratio. FAIC is a single-pass method, which removes bits from each codeword, then predicts the next pixel value through localized edge detection techniques, and finally uses Golomb-Rice codes to encode the residuals. FAIC uses only logical operations, bitwise operations, additions, and subtractions. Meanwhile, it eliminates the slow operations (e.g., multiplication, division, and logarithm) and the complex entropy coder, which can be a bottleneck in hardware implementations. Besides, FAIC does not depend on any precomputed tables or parameters. Experimental results demonstrate that FAIC achieves good balance between compression ratio and computational complexity in certain range (e.g., peak signal-to-noise ratio >35 dB, bits per pixel>2). It is suitable for applications in which the amount of data is huge or the computation power is limited.
Radiation reaction of multipole moments
Kazinski, P. O.
2007-08-01
A Poincaré-invariant description is proposed for the effective dynamics of a localized system of charged particles in classical electrodynamics in terms of the intrinsic multipole moments of the system. A relativistic-invariant definition for the intrinsic multipole moments of a system of charged particles is given. A new generally covariant action functional for a relativistic perfect fluid is proposed. In the case of relativistic charged dust, it is proven that the description of the problem of radiation reaction of multipole moments by the model of particles is equivalent to the description of this problem by a hydrodynamic model. An effective model is obtained for a pointlike neutral system of charged particles that possesses an intrinsic dipole moment, and the free dynamics of this system is described. The bound momentum of a point dipole is found.
Radiation reaction for multipole moments
Kazinski, P O
2006-01-01
We propose a Poincare-invariant description for the effective dynamics of systems of charged particles by means of intrinsic multipole moments. To achieve this goal we study the effective dynamics of such systems within two frameworks -- the particle itself and hydrodynamical one. We give a relativistic-invariant definition for the intrinsic multipole moments both pointlike and extended relativistic objects. Within the hydrodynamical framework we suggest a covariant action functional for a perfect fluid with pressure. In the case of a relativistic charged dust we prove the equivalence of the particle approach to the hydrodynamical one to the problem of radiation reaction for multipoles. As the particular example of a general procedure we obtain the effective model for a neutral system of charged particles with dipole moment.
Parallel Fast Multipole Method For Molecular Dynamics
2007-06-01
Rokhlin [18]. Other implementations, such as the work by Lupo [28] and Rankin [42] use a geometry based definition that have the advantage of...there is not consensus on the number of terms required in the FMM expansion. The work by Lupo , et. al. uses five terms [28]; Kurzak and Petitt use 16...FMM is not enough to overcome the serial speed difference. The previous implementation by Lupo and McKenney showed a parallel efficiency of slightly
Multipole expansion method for supernova neutrino oscillations
Energy Technology Data Exchange (ETDEWEB)
Duan, Huaiyu; Shalgar, Shashank, E-mail: duan@unm.edu, E-mail: shashankshalgar@unm.edu [Department of Physics and Astronomy, University of New Mexico, Albuquerque, NM 87131 (United States)
2014-10-01
We demonstrate a multipole expansion method to calculate collective neutrino oscillations in supernovae using the neutrino bulb model. We show that it is much more efficient to solve multi-angle neutrino oscillations in multipole basis than in angle basis. The multipole expansion method also provides interesting insights into multi-angle calculations that were accomplished previously in angle basis.
Multipole vector solitons in nonlocal nonlinear media.
Kartashov, Yaroslav V; Torner, Lluis; Vysloukh, Victor A; Mihalache, Dumitru
2006-05-15
We show that multipole solitons can be made stable via vectorial coupling in bulk nonlocal nonlinear media. Such vector solitons are composed of mutually incoherent nodeless and multipole components jointly inducing a nonlinear refractive index profile. We found that stabilization of the otherwise highly unstable multipoles occurs below certain maximum energy flow. Such a threshold is determined by the nonlocality degree.
HPAM: Hirshfeld partitioned atomic multipoles
Elking, Dennis M.; Perera, Lalith; Pedersen, Lee G.
2012-02-01
An implementation of the Hirshfeld (HD) and Hirshfeld-Iterated (HD-I) atomic charge density partitioning schemes is described. Atomic charges and atomic multipoles are calculated from the HD and HD-I atomic charge densities for arbitrary atomic multipole rank l on molecules of arbitrary shape and size. The HD and HD-I atomic charges/multipoles are tested by comparing molecular multipole moments and the electrostatic potential (ESP) surrounding a molecule with their reference ab initio values. In general, the HD-I atomic charges/multipoles are found to better reproduce ab initio electrostatic properties over HD atomic charges/multipoles. A systematic increase in precision for reproducing ab initio electrostatic properties is demonstrated by increasing the atomic multipole rank from l=0 (atomic charges) to l=4 (atomic hexadecapoles). Both HD and HD-I atomic multipoles up to rank l are shown to exactly reproduce ab initio molecular multipole moments of rank L for L⩽l. In addition, molecular dipole moments calculated by HD, HD-I, and ChelpG atomic charges only ( l=0) are compared with reference ab initio values. Significant errors in reproducing ab initio molecular dipole moments are found if only HD or HD-I atomic charges used. Program summaryProgram title: HPAM Catalogue identifier: AEKP_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEKP_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GNU General Public License v2 No. of lines in distributed program, including test data, etc.: 500 809 No. of bytes in distributed program, including test data, etc.: 13 424 494 Distribution format: tar.gz Programming language: C Computer: Any Operating system: Linux RAM: Typically, a few hundred megabytes Classification: 16.13 External routines: The program requires 'formatted checkpoint' files obtained from the Gaussian 03 or Gaussian 09 quantum chemistry program. Nature of problem: An ab initio
PROGRAM-PATTERN MULTIPOLE BOUNDARY ELEMENT METHOD FOR FRICTIONAL CONTACT
Institute of Scientific and Technical Information of China (English)
Yu Chunxiao; Shen Guangxian; Liu Deyi
2005-01-01
A mathematical program is proposed for the highly nonlinear problem involving frictional contact. A program-pattern using the fast multipole boundary element method (FMBEM) is given for 3-D elastic contact with friction to replace the Monte Carlo method. A new optimized generalized minimal residual (GMRES) algorithm is presented. Numerical examples demonstrate the validity of the program-pattern optimization model for node-to-surface contact with friction. The GMRES algorithm greatly improves the computational efficiency.
Mathematical Programming Solution for the Frictional Contact Multipole BEM
Institute of Scientific and Technical Information of China (English)
YU Chunxiao; SHEN Guangxian; LIU Deyi
2005-01-01
This paper presents a new mathematical model for the highly nonlinear problem of frictional contact. A programming model, multipole boundary element method (BEM), was developed for 3-D elastic contact with friction to replace the Monte Carlo method. A numerical example shows that the optimization programming model for the point-to-surface contact with friction and the fast optimization generalized minimal residual algorithm (GMRES(m)) significantly improve the analysis of such problems relative to the conventional BEM.
Khalilieh, Anton; McCue, Marshall D; Pinshow, Berry
2012-09-01
Many wild birds fast during reproduction, molting, migration, or because of limited food availability. Species that are adapted to fasting sequentially oxidize endogenous fuels in three discrete phases. We hypothesized that species not adapted to long fasts have truncated, but otherwise similar, phases of fasting, sequential changes in fuel oxidization, and similar changes in blood metabolites to fasting-adapted species. We tested salient predictions in house sparrows (Passer domesticus biblicus), a subspecies that is unable to tolerate more than ~32 h of fasting. Our main hypothesis was that fasting sparrows sequentially oxidize substrates in the order carbohydrates, lipids, and protein. We dosed 24 house sparrows with [(13)C]glucose, palmitic acid, or glycine and measured (13)CO(2) in their breath while they fasted for 24 h. To ascertain whether blood metabolite levels reflect fasting-induced changes in metabolic fuels, we also measured glucose, triacylglycerides, and β-hydroxybutyrate in the birds' blood. The results of both breath (13)CO(2) and plasma metabolite analyses did not support our hypothesis; i.e., that sparrows have the same metabolic responses characteristic of fasting-adapted species, but on a shorter time scale. Contrary to our main prediction, we found that recently assimilated (13)C-tracers were oxidized continuously in different patterns with no definite peaks corresponding to the three phases of fasting and also that changes in plasma metabolite levels accurately tracked the changes found by breath analysis. Notably, the rate of recently assimilated [(13)C]glycine oxidization was significantly higher (P fast for longer than 32 h is likely related to their inability to accrue large lipid stores, separately oxidize different fuels, and/or spare protein during fasting.
Vacuum energies and multipole interactions
Rangel, Fabricio Augusto Barone
2016-01-01
In this paper, we present a quantum-field-theoretical description of the interaction between stationary and localized external sources linearly coupled to bosonic fields (specifically, we study models with a scalar and the Maxwell field). We consider external sources that simulate not only point charges but also higher-multipole distributions along D-dimensional branes. Our results complement the ones previously obtained in reference [1].
Electromagnetic multipole fields of neutron stars
Roberts, W. J.
1979-01-01
A formalism is developed for treating general multipole electromagnetic fields of neutron stars. The electric multipoles induced in a neutron star by its rotation with an arbitrary magnetic multipole at its center are presented. It is shown how to express a family of off-centered multipoles having the same l weight as an infinite array of centered multipoles of increasing l weight referred to the rotational axis. General expressions are given for the linear momentum present in the superposition of arbitrary multipole fields, and the results are combined to compute the radiation rate of linear momentum by an off-centered dipole to zeroth order in the parameter Omega x R/c. The general Deutsch (1955) solution is then rederived in a clear consistent manner, and some minor additions and corrections are provided.
Polarizable atomic multipole X-ray refinement: application to peptide crystals
Energy Technology Data Exchange (ETDEWEB)
Schnieders, Michael J. [Department of Chemistry, Stanford, CA 94305 (United States); Fenn, Timothy D. [Department of Molecular and Cellular Physiology, Stanford, CA 94305 (United States); Howard Hughes Medical Institute (United States); Pande, Vijay S., E-mail: pande@stanford.edu [Department of Chemistry, Stanford, CA 94305 (United States); Brunger, Axel T., E-mail: pande@stanford.edu [Department of Molecular and Cellular Physiology, Stanford, CA 94305 (United States); Howard Hughes Medical Institute (United States); Department of Chemistry, Stanford, CA 94305 (United States)
2009-09-01
A method to accelerate the computation of structure factors from an electron density described by anisotropic and aspherical atomic form factors via fast Fourier transformation is described for the first time. Recent advances in computational chemistry have produced force fields based on a polarizable atomic multipole description of biomolecular electrostatics. In this work, the Atomic Multipole Optimized Energetics for Biomolecular Applications (AMOEBA) force field is applied to restrained refinement of molecular models against X-ray diffraction data from peptide crystals. A new formalism is also developed to compute anisotropic and aspherical structure factors using fast Fourier transformation (FFT) of Cartesian Gaussian multipoles. Relative to direct summation, the FFT approach can give a speedup of more than an order of magnitude for aspherical refinement of ultrahigh-resolution data sets. Use of a sublattice formalism makes the method highly parallelizable. Application of the Cartesian Gaussian multipole scattering model to a series of four peptide crystals using multipole coefficients from the AMOEBA force field demonstrates that AMOEBA systematically underestimates electron density at bond centers. For the trigonal and tetrahedral bonding geometries common in organic chemistry, an atomic multipole expansion through hexadecapole order is required to explain bond electron density. Alternatively, the addition of interatomic scattering (IAS) sites to the AMOEBA-based density captured bonding effects with fewer parameters. For a series of four peptide crystals, the AMOEBA–IAS model lowered R{sub free} by 20–40% relative to the original spherically symmetric scattering model.
Multipole surface solitons in layered thermal media
Kartashov, Yaroslav V; Torner, Lluis
2008-01-01
We address the existence and properties of multipole solitons localized at a thermally insulating interface between uniform or layered thermal media and a linear dielectric. We find that in the case of uniform media, only surface multipoles with less than three poles can be stable. In contrast, we reveal that periodic alternation of the thermo-optic coefficient in layered thermal media makes possible the stabilization of higher order multipoles.
Reduced Interocular Transfer of Spatial Adaptation for Fast Stimuli
Directory of Open Access Journals (Sweden)
Daniel H Baker
2012-05-01
Full Text Available Threshold elevation following monocular adaptation is weaker in the unadapted eye than in the adapted eye. At least 15 studies have measured this interocular transfer (IOT phenomenon, and typically report around 60% transfer. Yet almost all of these studies used spatial frequencies above 3c/deg, very slow temporal parameters, and criterion sensitive methods (method of adjustment, yes/no. In recent work, we (Meese and Baker 2011, i-Perception 2 159–182 found markedly weaker interocular transfer at low spatial and high temporal frequencies. Here, we measure IOT in 9 observers for a broad range of spatiotemporal frequencies (0.5, 2, and 8c/deg; 1, 4, and 15Hz using a 2AFC paradigm. Targets were horizontal Gabor patches with a full-width-at-half height of 1.67 (lower frequencies or 6.68 (8c/deg grating cycles. Adaptors were larger gratings with the same spatiotemporal properties as the targets. Observers adapted for 2 min initially, and 5 s between each trial, with monocular presentation enabled by shutter goggles. We typically found weaker IOT than previously reported (<50%, particularly for our fastest stimuli (lowest spatial and highest temporal frequencies, where it was virtually absent in all cases. Binocular summation and monocular adaptation were normal in all conditions. This implies that adaptation to ‘magno’ stimuli, not investigated in previous studies, occurs at a monocular locus. We also consider possible methodological confounds in classical studies which might have inflated the levels of IOT. These include the formation of retinal afterimages from static adaptors and changes in criterion unrelated to changes in sensitivity.
Fast Adaptation in Generative Models with Generative Matching Networks
Bartunov, Sergey; Vetrov, Dmitry P.
2016-01-01
Despite recent advances, the remaining bottlenecks in deep generative models are necessity of extensive training and difficulties with generalization from small number of training examples. Both problems may be addressed by conditional generative models that are trained to adapt the generative distribution to additional input data. So far this idea was explored only under certain limitations such as restricting the input data to be a single object or multiple objects representing the same con...
Organizational Adaptive Capacity: How Much, How Fast, and How Often
2012-03-25
equilibrates between internal and external factors. The objective here is to synthesize the many intuitive and disparately articulated concepts of adaptation...idea of “reversibility” emerged in the force structure debate and is included in the latest Army Posture Statement.22 The general idea 7...the Posture of the United States Army 2012, Posture Statement presented to the 112 th Cong., 2 nd Session (Washington, DC: U.S. Department of the
Multipole Moments of numerical spacetimes
Pappas, George
2012-01-01
In this article we present some recent results on identifying correctly the relativistic multipole moments of numerically constructed spacetimes, and the consequences that this correction has on searching for appropriate analytic spacetimes that can approximate well the previously mentioned numerical spacetimes. We also present expressions that give the quadrupole and the spin octupole as functions of the spin parameter of a neutron star for various equations of state and in a range of masses for every equation of state used. These results are relevant for describing the exterior spacetime of rotating neutron stars that are made up of matter obeying realistic equations of state.
Fast GPU based adaptive filtering of 4D echocardiography.
Broxvall, Mathias; Emilsson, Kent; Thunberg, Per
2012-06-01
Time resolved three-dimensional (3D) echocardiography generates four-dimensional (3D+time) data sets that bring new possibilities in clinical practice. Image quality of four-dimensional (4D) echocardiography is however regarded as poorer compared to conventional echocardiography where time-resolved 2D imaging is used. Advanced image processing filtering methods can be used to achieve image improvements but to the cost of heavy data processing. The recent development of graphics processing unit (GPUs) enables highly parallel general purpose computations, that considerably reduces the computational time of advanced image filtering methods. In this study multidimensional adaptive filtering of 4D echocardiography was performed using GPUs. Filtering was done using multiple kernels implemented in OpenCL (open computing language) working on multiple subsets of the data. Our results show a substantial speed increase of up to 74 times, resulting in a total filtering time less than 30 s on a common desktop. This implies that advanced adaptive image processing can be accomplished in conjunction with a clinical examination. Since the presented GPU processor method scales linearly with the number of processing elements, we expect it to continue scaling with the expected future increases in number of processing elements. This should be contrasted with the increases in data set sizes in the near future following the further improvements in ultrasound probes and measuring devices. It is concluded that GPUs facilitate the use of demanding adaptive image filtering techniques that in turn enhance 4D echocardiographic data sets. The presented general methodology of implementing parallelism using GPUs is also applicable for other medical modalities that generate multidimensional data.
Adaptation of fibers in fast-twitch muscles of rats to spaceflight and hindlimb suspension
Jiang, Bian; Ohira, Yoshi; Roy, Roland R.; Nguyen, Quyet; Il'ina-Kakueva, E. I.; Oganov, V.; Edgerton, V. R.
1992-01-01
The adaptation of single fibers in medial gastrocnemius (MG), a fast-twitch extensor, and in tibialis anterior (TA), a fast-twitch flexor, was studied after 14 days of spaceflight onboard Cosmos 2044 or hindlimb suspension. Quantitative myosin ATPase activities of single fibers were measured in flight and suspended rats. Each of the enzyme and size measurements were directly correlated within each fiber with respect to its qualitative myosin ATPase staining properties and its expression of fast, slow, or both myosin heavy chains (MHC). The percentage of slow- and fast-twitch fibers of the MG and TA were found to be unchanged. Mean fiber size of all fibers was unaffected after flight or suspension. The ATPase activity in the MG was higher in flight than in control or suspended rats. In comparison to Cosmos 1887 spaceflight, the adaptations in the muscle fibers of the MG were more moderate.
Description of complex time series by multipoles
DEFF Research Database (Denmark)
Lewkowicz, M.; Levitan, J.; Puzanov, N.
2002-01-01
We present a new method to describe time series with a highly complex time evolution. The time series is projected onto a two-dimensional phase-space plot which is quantified in terms of a multipole expansion where every data point is assigned a unit mass. The multipoles provide an efficient...... characterization of the original time series....
Beneficial metabolic adaptations due to endurance exercise training in the fasted state
Van Proeyen, Karen; Szlufcik, Karolina; Nielens, Henri; Ramaekers, Monique; Hespel, Peter
2010-01-01
Training with limited carbohydrate availability can stimulate adaptations in muscle cells to facilitate energy production via fat oxidation. Here we investigated the effect of consistent training in the fasted state, vs. training in the fed state, on muscle metabolism and substrate selection during fasted exercise. Twenty young male volunteers participated in a 6-wk endurance training program (1-1.5 h cycling at ∼70% Vo(₂max), 4 days/wk) while receiving isocaloric carbohydrate-rich diets. Hal...
Fast but fleeting: adaptive motor learning processes associated with aging and cognitive decline.
Trewartha, Kevin M; Garcia, Angeles; Wolpert, Daniel M; Flanagan, J Randall
2014-10-01
Motor learning has been shown to depend on multiple interacting learning processes. For example, learning to adapt when moving grasped objects with novel dynamics involves a fast process that adapts and decays quickly-and that has been linked to explicit memory-and a slower process that adapts and decays more gradually. Each process is characterized by a learning rate that controls how strongly motor memory is updated based on experienced errors and a retention factor determining the movement-to-movement decay in motor memory. Here we examined whether fast and slow motor learning processes involved in learning novel dynamics differ between younger and older adults. In addition, we investigated how age-related decline in explicit memory performance influences learning and retention parameters. Although the groups adapted equally well, they did so with markedly different underlying processes. Whereas the groups had similar fast processes, they had different slow processes. Specifically, the older adults exhibited decreased retention in their slow process compared with younger adults. Within the older group, who exhibited considerable variation in explicit memory performance, we found that poor explicit memory was associated with reduced retention in the fast process, as well as the slow process. These findings suggest that explicit memory resources are a determining factor in impairments in the both the fast and slow processes for motor learning but that aging effects on the slow process are independent of explicit memory declines.
Fast Source Camera Identification Using Content Adaptive Guided Image Filter.
Zeng, Hui; Kang, Xiangui
2016-03-01
Source camera identification (SCI) is an important topic in image forensics. One of the most effective fingerprints for linking an image to its source camera is the sensor pattern noise, which is estimated as the difference between the content and its denoised version. It is widely believed that the performance of the sensor-based SCI heavily relies on the denoising filter used. This study proposes a novel sensor-based SCI method using content adaptive guided image filter (CAGIF). Thanks to the low complexity nature of the CAGIF, the proposed method is much faster than the state-of-the-art methods, which is a big advantage considering the potential real-time application of SCI. Despite the advantage of speed, experimental results also show that the proposed method can achieve comparable or better performance than the state-of-the-art methods in terms of accuracy.
Fast, Sequence Adaptive Parcellation of Brain MR Using Parametric Models
DEFF Research Database (Denmark)
Puonti, Oula; Iglesias, Juan Eugenio; Van Leemput, Koen
2013-01-01
-of-the-art segmentation performance in both cortical and subcortical structures, while retaining all the benefits of generative parametric models, including high computational speed, automatic adaptiveness to changes in image contrast when different scanner platforms and pulse sequences are used, and the ability......In this paper we propose a method for whole brain parcellation using the type of generative parametric models typically used in tissue classification. Compared to the non-parametric, multi-atlas segmentation techniques that have become popular in recent years, our method obtains state...... to handle multi-contrast (vector-valued intensities) MR data. We have validated our method by comparing its segmentations to manual delineations both within and across scanner platforms and pulse sequences, and show preliminary results on multi-contrast test-retest scans, demonstrating the feasibility...
A single-site multipole model for liquid water
Tran, Kelly N.; Tan, Ming-Liang; Ichiye, Toshiko
2016-07-01
Accurate and efficient empirical potential energy models that describe the atomistic interactions between water molecules in the liquid phase are essential for computer simulations of many problems in physics, chemistry, and biology, especially when long length or time scales are important. However, while models with non-polarizable partial charges at four or five sites in a water molecule give remarkably good values for certain properties, deficiencies have been noted in other properties and increasing the number of sites decreases computational efficiency. An alternate approach is to utilize a multipole expansion of the electrostatic potential due to the molecular charge distribution, which is exact outside the charge distribution in the limits of infinite distances or infinite orders of multipoles while partial charges are a qualitative representation of electron density as point charges. Here, a single-site multipole model of water is presented, which is as fast computationally as three-site models but is also more accurate than four- and five-site models. The dipole, quadrupole, and octupole moments are from quantum mechanical-molecular mechanical calculations so that they account for the average polarization in the liquid phase, and represent both the in-plane and out-of-plane electrostatic potentials of a water molecule in the liquid phase. This model gives accurate thermodynamic, dynamic, and dielectric properties at 298 K and 1 atm, as well as good temperature and pressure dependence of these properties.
Tailoring the multipoles in THz toroidal metamaterials
Cong, Longqing; Srivastava, Yogesh Kumar; Singh, Ranjan
2017-08-01
The multipoles play a significant role in determining the resonant behavior of subwavelength resonators that form the basis of metamaterial and plasmonic systems. Here, we study the impact of multipoles including toroidal dipole on the resonance intensity and linewidth of the fundamental inductive-capacitance (LC) resonance of a metamaterial array. The dominant multipoles that strongly contribute to the resonances are tailored by spatial rearrangement of the neighboring resonators such that the mutual interactions between the magnetic, electric, and toroidal configurations lead to enormous change in the linewidth as well as the resonance intensity of the LC mode. Manipulation of the multipoles in a metamaterial array provides a general strategy for the optimization of the quality factor of metamaterial resonances, which is fundamental to its applications in broad areas of sensing, lasing and nonlinear optics where stronger field confinement plays a significant role.
Adaptations to fasting in the American mink (Mustela vison): nitrogen metabolism.
Mustonen, Anne-Mari; Puukka, Matti; Pyykönen, Teija; Nieminen, Petteri
2005-07-01
The aim of this study was to investigate the adaptations of protein metabolism to seasonal fasting in an actively wintering boreal carnivore. Fifty farm-bred male American minks Mustela vison were divided into a fed control group and four experimental groups fasted for 2, 3, 5 or 7 days. The responses of nitrogen metabolism to wintertime food deprivation were determined by measuring the rate of weight loss, the tissue total protein concentrations and the plasma amino acid, urea, ammonia, uric acid and total protein levels. The mink has relatively poor adaptations to food deprivation, as it is not able to prolong phase II of fasting with fat as the major metabolic fuel. Instead, the species has to derive a part of its energy requirements from the breakdown of body proteins. The end product of protein catabolism--urea--accumulates in its circulation, and the mink may not be able to recycle urea-N. Although the mink can still have a high body fat percent at the end of the 7-day fast, it appears to enter phase III of fasting with stimulated proteolysis during this period.
Adaptations to fasting in the American mink (Mustela vison): carbohydrate and lipid metabolism.
Mustonen, Anne-Mari; Pyykönen, Teija; Paakkonen, Tommi; Ryökkynen, Ari; Asikainen, Juha; Aho, Jari; Mononen, Jaakko; Nieminen, Petteri
2005-02-01
The aim of this study was to investigate whether the actively wintering American mink Mustela vison is strictly dependent on continuous food availability or if it has evolved physiological adaptations to tolerate nutritional scarcity. Fifty farm-bred male minks were divided into a fed control group and four experimental groups fasted for 2, 3, 5 or 7 days. The rate of weight loss was several-fold higher (1.5-3.2% day(-1)) in the mink than recorded previously in larger carnivores utilizing passive wintering strategies. The minks remained normoglycaemic, although their liver glycogen stores and glucose-6-phosphatase activities decreased during fasting. Adipose tissue constituted approximately 36% of their body mass after 7 days of food deprivation. Intra-abdominal fat, especially retroperitoneal but also mesenteric adipose tissue, were the most important fat depots to be hydrolyzed, but the ability of the mink to utilize its body lipids during fasting may be limited. The increased liver size, hepatic triacylglycerol accumulation and increases in the activities of plasma aminotransferases indicated liver dysfunction. Food deprivation also affected the red blood cell indices, and the blood monocyte and lymphocyte counts decreased suggesting immunosuppression during fasting. The results of the present study suggest that the mink has not evolved sophisticated adaptations to wintertime fasting.
Fasting induces a biphasic adaptive metabolic response in murine small intestine
Directory of Open Access Journals (Sweden)
Evelo Chris TA
2007-10-01
Full Text Available Abstract Background The gut is a major energy consumer, but a comprehensive overview of the adaptive response to fasting is lacking. Gene-expression profiling, pathway analysis, and immunohistochemistry were therefore carried out on mouse small intestine after 0, 12, 24, and 72 hours of fasting. Results Intestinal weight declined to 50% of control, but this loss of tissue mass was distributed proportionally among the gut's structural components, so that the microarrays' tissue base remained unaffected. Unsupervised hierarchical clustering of the microarrays revealed that the successive time points separated into distinct branches. Pathway analysis depicted a pronounced, but transient early response that peaked at 12 hours, and a late response that became progressively more pronounced with continued fasting. Early changes in gene expression were compatible with a cellular deficiency in glutamine, and metabolic adaptations directed at glutamine conservation, inhibition of pyruvate oxidation, stimulation of glutamate catabolism via aspartate and phosphoenolpyruvate to lactate, and enhanced fatty-acid oxidation and ketone-body synthesis. In addition, the expression of key genes involved in cell cycling and apoptosis was suppressed. At 24 hours of fasting, many of the early adaptive changes abated. Major changes upon continued fasting implied the production of glucose rather than lactate from carbohydrate backbones, a downregulation of fatty-acid oxidation and a very strong downregulation of the electron-transport chain. Cell cycling and apoptosis remained suppressed. Conclusion The changes in gene expression indicate that the small intestine rapidly looses mass during fasting to generate lactate or glucose and ketone bodies. Meanwhile, intestinal architecture is maintained by downregulation of cell turnover.
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A. Schroeder
2012-09-01
Full Text Available This paper proposes a compression of far field matrices in the fast multipole method and its multilevel extension for electromagnetic problems. The compression is based on a spherical harmonic representation of radiation patterns in conjunction with a radiating mode expression of the surface current. The method is applied to study near field effects and the far field of an antenna placed on a ship surface. Furthermore, the electromagnetic scattering of an electrically large plate is investigated. It is demonstrated, that the proposed technique leads to a significant memory saving, making multipole algorithms even more efficient without compromising the accuracy.
Adaptive integral method with fast Gaussian gridding for solving combined field integral equations
Bakır, O.; Baǧ; Cı, H.; Michielssen, E.
Fast Gaussian gridding (FGG), a recently proposed nonuniform fast Fourier transform algorithm, is used to reduce the memory requirements of the adaptive integral method (AIM) for accelerating the method of moments-based solution of combined field integral equations pertinent to the analysis of scattering from three-dimensional perfect electrically conducting surfaces. Numerical results that demonstrate the efficiency and accuracy of the AIM-FGG hybrid in comparison to an AIM-accelerated solver, which uses moment matching to project surface sources onto an auxiliary grid, are presented.
Research on design of adaptive connecting mechanisms for the cable-net and panels of FAST
Jiang, Peng; Li, Qing-Wei; Nan, Ren-Dong
2017-09-01
The reflector system of the Five-hundred-meter Aperture Spherical radio Telescope (FAST) is designed to incorporate 4450 rigid panels supported by a flexible cable-net structure. The shape-changing operation that occurs in the process of observation will lead to a relative displacement between adjacent nodes in the cable-net. In addition, three nodes on a rigid panel are fixed with respect to each other. Thus, adaptive connecting mechanisms between panels and the cable-net are certainly needed. The present work focuses on the following aspects. Firstly, the degrees of freedom of adaptive connecting mechanisms were designed so that we can not only adapt the panel to the deformation of the cable-net, but also restrict the panel to its right place. Secondly, finite element and theoretical analyses were applied to calculate the scope of motion in adaptive connecting mechanisms during the cable-net’s shape-changing operation, thus providing input parameters for the design size of the adaptive connecting mechanisms. In addition, the gap size between the panels is also investigated to solve the trade-off between avoiding panel collisions and increasing the observation efficiency of FAST.
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Hui Liu
2015-01-01
Full Text Available The key problem of computer-aided diagnosis (CAD of lung cancer is to segment pathologically changed tissues fast and accurately. As pulmonary nodules are potential manifestation of lung cancer, we propose a fast and self-adaptive pulmonary nodules segmentation method based on a combination of FCM clustering and classification learning. The enhanced spatial function considers contributions to fuzzy membership from both the grayscale similarity between central pixels and single neighboring pixels and the spatial similarity between central pixels and neighborhood and improves effectively the convergence rate and self-adaptivity of the algorithm. Experimental results show that the proposed method can achieve more accurate segmentation of vascular adhesion, pleural adhesion, and ground glass opacity (GGO pulmonary nodules than other typical algorithms.
Bohoudi, O; Bruynzeel, A M E; Senan, S; Cuijpers, J P; Slotman, B J; Lagerwaard, F J; Palacios, M A
2017-08-12
To implement a robust and fast stereotactic MR-guided adaptive radiation therapy (SMART) online strategy in locally advanced pancreatic cancer (LAPC). SMART strategy for plan adaptation was implemented with the MRIdian system (ViewRay Inc.). At each fraction, OAR (re-)contouring is done within a distance of 3cm from the PTV surface. Online plan re-optimization is based on robust prediction of OAR dose and optimization objectives, obtained by building an artificial neural network (ANN). Proposed limited re-contouring strategy for plan adaptation (SMART3CM) is evaluated by comparing 50 previously delivered fractions against a standard (re-)planning method using full-scale OAR (re-)contouring (FULLOAR). Plan quality was assessed using PTV coverage (V95%, Dmean, D1cc) and institutional OAR constraints (e.g. V33Gy). SMART3CM required a significant lower number of optimizations than FULLOAR (4 vs 18 on average) to generate a plan meeting all objectives and institutional OAR constraints. PTV coverage with both strategies was identical (mean V95%=89%). Adaptive plans with SMART3CM exhibited significant lower intermediate and high doses to all OARs than FULLOAR, which also failed in 36% of the cases to adhere to the V33Gy dose constraint. SMART3CM approach for LAPC allows good OAR sparing and adequate target coverage while requiring only limited online (re-)contouring from clinicians. Copyright © 2017 Elsevier B.V. All rights reserved.
Beneficial metabolic adaptations due to endurance exercise training in the fasted state.
Van Proeyen, Karen; Szlufcik, Karolina; Nielens, Henri; Ramaekers, Monique; Hespel, Peter
2011-01-01
Training with limited carbohydrate availability can stimulate adaptations in muscle cells to facilitate energy production via fat oxidation. Here we investigated the effect of consistent training in the fasted state, vs. training in the fed state, on muscle metabolism and substrate selection during fasted exercise. Twenty young male volunteers participated in a 6-wk endurance training program (1-1.5 h cycling at ∼70% Vo(₂max), 4 days/wk) while receiving isocaloric carbohydrate-rich diets. Half of the subjects trained in the fasted state (F; n = 10), while the others ingested ample carbohydrates before (∼160 g) and during (1 g·kg body wt⁻¹·h⁻¹) the training sessions (CHO; n = 10). The training similarly increased Vo(₂max) (+9%) and performance in a 60-min simulated time trial (+8%) in both groups (P Metabolic measurements were made during a 2-h constant-load exercise bout in the fasted state at ∼65% pretraining Vo(₂max). In F, exercise-induced intramyocellular lipid (IMCL) breakdown was enhanced in type I fibers (P Training did not affect IMCL breakdown in CHO. In addition, F (+21%) increased the exercise intensity corresponding to the maximal rate of fat oxidation more than did CHO (+6%) (P exercise-induced drop in blood glucose concentration (P exercise-induced net IMCL degradation. In addition, F but not CHO prevented drop of blood glucose concentration during fasting exercise.
A Fast and Adaptive Search Algorithm Based on Rood Pattern and Gradient Descent
Lin, Mu-Long; Yi, Qing-Ming; Shi, Min
In order to achieve the real-time property for video coding, a fast and adaptive algorithm based on starting search point prediction and early-termination strategy is proposed. It analyzes center-bias property and spatial correlation property of motion vector field, and utilizes the respective characteristics of block based gradient descent search (BBGDS) and adaptive rood pattern search (ARPS) algorithm. The proposed algorithm adaptively chooses different searching strategies according to the type of the image, makes full use of the cross image motion vector distribution characteristics and optimizes the traditional ARPS algorithm. The experimental results show that the proposed algorithm is about 2.3∼9.2 times faster than Diamond Search (DS), 1.2∼4.0 times than ARPS. The algorithm can meet the real-time demand without reducing the image quality.
Superposition frames for adaptive time-frequency analysis and fast reconstruction
Rudoy, Daniel; Wolfe, Patrick J
2009-01-01
In this article we introduce a broad family of adaptive, linear time-frequency representations termed superposition frames, and show that they admit desirable fast overlap-add reconstruction properties akin to standard short-time Fourier techniques. This approach stands in contrast to many adaptive time-frequency representations in the extant literature, which, while more flexible than standard fixed-resolution approaches, typically fail to provide efficient reconstruction and often lack the regular structure necessary for precise frame-theoretic analysis. Our main technical contributions come through the development of properties which ensure that this construction provides for a numerically stable, invertible signal representation. Our primary algorithmic contributions come via the introduction and discussion of specific signal adaptation criteria in deterministic and stochastic settings, based respectively on time-frequency concentration and nonstationarity detection. We conclude with a short speech enhanc...
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Dorian S Houser
2013-11-01
Full Text Available Insulin resistance in modern society is perceived as a pathological consequence of excess energy consumption and reduced physical activity. Its presence in relation to the development of cardiovascular risk factors has been termed the metabolic syndrome, which produces increased mortality and morbidity and which is rapidly increasing in human populations. Ironically, insulin resistance likely evolved to assist animals during food shortages by increasing the availability of endogenous lipid for catabolism while protecting protein from use in gluconeogenesis and eventual oxidation. Some species that incorporate fasting as a predictable component of their life history demonstrate physiological traits similar to the metabolic syndrome during prolonged fasts. One such species is the northern elephant seal (Mirounga angustirostris, which fasts from food and water for periods of up to three months. During this time, ~90% of the seals metabolic demands are met through fat oxidation and circulating non-esterified fatty acids are high (0.7-3.2 mM. All life history stages of elephant seal studied to date demonstrate insulin resistance and fasting hyperglycemia as well as variations in hormones and adipocytokines that reflect the metabolic syndrome to some degree. Elephant seals demonstrate some intriguing adaptations with the potential for medical advancement; for example, ketosis is negligible despite significant and prolonged fatty acid oxidation and investigation of this feature might provide insight into the treatment of diabetic ketoacidosis. The parallels to the metabolic syndrome are likely reflected to varying degrees in other marine mammals, most of which evolved on diets high in lipid and protein content but essentially devoid of carbohydrate. Utilization of these natural models of insulin resistance may further our understanding of the pathophysiology of the metabolic syndrome in humans and better assist the development of preventative measures
Adaptive Hybrid Visual Servo Regulation of Mobile Robots Based on Fast Homography Decomposition
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Chunfu Wu
2015-01-01
Full Text Available For the monocular camera-based mobile robot system, an adaptive hybrid visual servo regulation algorithm which is based on a fast homography decomposition method is proposed to drive the mobile robot to its desired position and orientation, even when object’s imaging depth and camera’s position extrinsic parameters are unknown. Firstly, the homography’s particular properties caused by mobile robot’s 2-DOF motion are taken into account to induce a fast homography decomposition method. Secondly, the homography matrix and the extracted orientation error, incorporated with the desired view’s single feature point, are utilized to form an error vector and its open-loop error function. Finally, Lyapunov-based techniques are exploited to construct an adaptive regulation control law, followed by the experimental verification. The experimental results show that the proposed fast homography decomposition method is not only simple and efficient, but also highly precise. Meanwhile, the designed control law can well enable mobile robot position and orientation regulation despite the lack of depth information and camera’s position extrinsic parameters.
Improving GPU-accelerated adaptive IDW interpolation algorithm using fast kNN search.
Mei, Gang; Xu, Nengxiong; Xu, Liangliang
2016-01-01
This paper presents an efficient parallel Adaptive Inverse Distance Weighting (AIDW) interpolation algorithm on modern Graphics Processing Unit (GPU). The presented algorithm is an improvement of our previous GPU-accelerated AIDW algorithm by adopting fast k-nearest neighbors (kNN) search. In AIDW, it needs to find several nearest neighboring data points for each interpolated point to adaptively determine the power parameter; and then the desired prediction value of the interpolated point is obtained by weighted interpolating using the power parameter. In this work, we develop a fast kNN search approach based on the space-partitioning data structure, even grid, to improve the previous GPU-accelerated AIDW algorithm. The improved algorithm is composed of the stages of kNN search and weighted interpolating. To evaluate the performance of the improved algorithm, we perform five groups of experimental tests. The experimental results indicate: (1) the improved algorithm can achieve a speedup of up to 1017 over the corresponding serial algorithm; (2) the improved algorithm is at least two times faster than our previous GPU-accelerated AIDW algorithm; and (3) the utilization of fast kNN search can significantly improve the computational efficiency of the entire GPU-accelerated AIDW algorithm.
Simulation of Monopole and Multipole Seismoelectric Logging
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Zhiwen Cui
2011-01-01
Full Text Available In a fluid-saturated porous formation, acoustics and electromagnetic waves are coupled based on Pride seismoelectric theory. An exact treatment of the nonaxisymmetric seismoelectric field excited by acoustic multipole sources is presented. The frequency wavenumber domain representations of the acoustic field and associated seismoelectric field due to acoustic multipole sources are formulated. The full waveforms of acoustic waves and electric and magnetic fields in the time domain propagation in borehole are simulated by using discrete wave number integration, and frequency versus axial-wave number responses are presented and analyzed.
Adaptations to fasting in a terrestrial mustelid, the sable (Martes zibellina).
Mustonen, Anne-Mari; Puukka, Matti; Saarela, Seppo; Paakkonen, Tommi; Aho, Jari; Nieminen, Petteri
2006-08-01
The aim of this study was to investigate whether the actively wintering Palearctic sable Martes zibellina has evolved physiological adaptations to tolerate nutritional scarcity. Sixteen farm-bred male sables were divided into a fed control group and an experimental group fasted for 4 days. The rate of weight loss in the sable was similar to other medium-sized mustelids. Fasting led to hypoglycaemia and to a decreased lymphocyte percentage. The sable derived metabolic energy from both subcutaneous and intraabdominal white adipose tissues and the relative decrease in fat mass was the largest for the retroperitoneal and subcutaneous depots. Metabolic energy derived partly from body proteins indicated by the increased plasma levels of urea, uric acid and total essential amino acids. Triacylglycerols accumulated in the livers of the fasted sables and the increased plasma aminotransferase activities suggested hepatic dysfunction. The decreased plasma insulin concentrations and the elevated cortisol levels probably contributed to stimulated lipolysis and protein catabolism. Moreover, fasting increased the plasma ghrelin concentrations of the sables and down-regulated the thyroid activity.
The use of the spectral method within the fast adaptive composite grid method
Energy Technology Data Exchange (ETDEWEB)
McKay, S.M.
1994-12-31
The use of efficient algorithms for the solution of partial differential equations has been sought for many years. The fast adaptive composite grid (FAC) method combines an efficient algorithm with high accuracy to obtain low cost solutions to partial differential equations. The FAC method achieves fast solution by combining solutions on different grids with varying discretizations and using multigrid like techniques to find fast solution. Recently, the continuous FAC (CFAC) method has been developed which utilizes an analytic solution within a subdomain to iterate to a solution of the problem. This has been shown to achieve excellent results when the analytic solution can be found. The CFAC method will be extended to allow solvers which construct a function for the solution, e.g., spectral and finite element methods. In this discussion, the spectral methods will be used to provide a fast, accurate solution to the partial differential equation. As spectral methods are more accurate than finite difference methods, the ensuing accuracy from this hybrid method outside of the subdomain will be investigated.
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Jesmin F. Khan
2008-08-01
Full Text Available A novel approach for bidimensional empirical mode decomposition (BEMD is proposed in this paper. BEMD decomposes an image into multiple hierarchical components known as bidimensional intrinsic mode functions (BIMFs. In each iteration of the process, two-dimensional (2D interpolation is applied to a set of local maxima (minima points to form the upper (lower envelope. But, 2D scattered data interpolation methods cause huge computation time and other artifacts in the decomposition. This paper suggests a simple, but effective, method of envelope estimation that replaces the surface interpolation. In this method, order statistics filters are used to get the upper and lower envelopes, where filter size is derived from the data. Based on the properties of the proposed approach, it is considered as fast and adaptive BEMD (FABEMD. Simulation results demonstrate that FABEMD is not only faster and adaptive, but also outperforms the original BEMD in terms of the quality of the BIMFs.
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Antonella Agodi
2005-03-01
Full Text Available
Background. Food contamination by trichothecene mycotoxins is considered to be an emerging public health problem. The aim of this study was to validate a rapid sonification protocol, previously set up for cereal Fusarium DNA extraction from fast food samples, produced by a centre for research and development in the food industry in Catania, Sicily, and to validate it for a diagnostic PCR assay targeted at tri5, the key gene of trichothecene biosynthesis.
Methods. DNA from reference Fusarium spp. strains and from fast food samples was prepared, setting up an extraction protocol adapted using some modifications based on a method recently described. Validation experiments were performed: serial dilution of DNA extracted from fungal cultures were added to food samples and then DNA was extracted. Specific primer pairs were used to detect F. graminearum and F. culmorum DNA in species-specific assays as well as trichothecene-producing Fusarium spp. in a groupspecific system.
Results. All genomic DNA extracted from trichothecene-producing Fusarium spp. as well as from DNA-spiked fast food samples and from food still in it’s original condition resulted in the correct amplification. The detection limit was 1 x 10-4 μg of DNA. All fungal and food samples tested gave highly consistent results in repeatability assays, thus demonstrating the within-lab and within/between-day precision of the method.
Conclusions. Information on the epidemiology of trichothecene producing Fusarium through the food chain and the identification of the most frequently contaminated components of fast food are essential in order to develop effective public health strategies for minimising consumer exposure to trichothecenes. Key words: Fusarium, fast food, trichothecenes, PCR
Suppressing CMB low multipoles with ISW effect
Das, Santanu
2013-01-01
Recent results of Planck data reveal that the power in the low multipoles of the CMB angular power spectrum, approximately up to $l=30$, is significantly lower than the theoretically predicted in the best fit $\\Lambda$CDM model. In this paper we investigate the possibility of invoking the Integrated Sachs-Wolfe (ISW) effect to explain this power deficit at low multipoles. The ISW effect that originates from the late time expansion history of the universe is rich in possibilities given the limited understanding of the origin of dark energy (DE). It is a common understanding that the ISW effect adds to the power at the low multipoles of the CMB angular power spectrum. In this paper we carry out an analytic study to show that there are some expansion histories in which the ISW effect, instead of adding power, provides negative contribution to the power at low multipoles. Guided by the analytic study, we present examples of the features required in the late time expansion history of the universe that could explai...
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Klempel Monica C
2010-09-01
Full Text Available Abstract Background Alternate day modified fasting (ADMF is an effective strategy for weight loss in obese adults. Objective The objective of this study was to examine the dietary and physical activity adaptations that occur during short-term ADMF, and to determine how these modulations affect rate of weight loss. Methods Sixteen obese subjects (12 women/4 men completed a 10-week trial consisting of 3 phases: 1 2-week control phase, 2 4-week ADMF controlled feeding phase, and 3 4-week ADMF self-selected feeding phase. Results Body weight decreased (P r = 0.42, P = 0.01. Dietary fat intake decreased (36% to 33% of kcal, P r = 0.38, P = 0.03. Hunger on the fast day decreased (P Conclusion These findings indicate that obese subjects quickly adapt to ADMF, and that changes in energy/macronutrient intake, hunger, and maintenance of physical activity play a role in influencing rate of weight loss by ADMF.
Multipole Analysis of Circular Cylindircal Magnetic Systems
Energy Technology Data Exchange (ETDEWEB)
Selvaggi, Jerry P. [Rensselaer Polytechnic Inst., Troy, NY (United States)
2005-12-01
This thesis deals with an alternate method for computing the external magnetic field from a circular cylindrical magnetic source. The primary objective is to characterize the magnetic source in terms of its equivalent multipole distribution. This multipole distribution must be valid at points close to the cylindrical source and a spherical multipole expansion is ill-equipped to handle this problem; therefore a new method must be introduced. This method, based upon the free-space Green's function in cylindrical coordinates, is developed as an alternative to the more familiar spherical harmonic expansion. A family of special functions, called the toroidal functions or Q-functions, are found to exhibit the necessary properties for analyzing circular cylindrical geometries. In particular, the toroidal function of zeroth order, which comes from the integral formulation of the free-space Green's function in cylindrical coordinates, is employed to handle magnetic sources which exhibit circular cylindrical symmetry. The toroidal functions, also called Q-functions, are the weighting coefficients in a ''Fourier series-like'' expansion which represents the free-space Green's function. It is also called a toroidal expansion. This expansion can be directly employed in electrostatic, magnetostatic, and electrodynamic problems which exhibit cylindrical symmetry. Also, it is shown that they can be used as an alternative to the Elliptic integral formulation. In fact, anywhere that an Elliptic integral appears, one can replace it with its corresponding Q-function representation. A number of problems, using the toroidal expansion formulation, are analyzed and compared to existing known methods in order to validate the results. Also, the equivalent multipole distribution is found for most of the solved problems along with its corresponding physical interpretation. The main application is to characterize the external magnetic field due to a six
Modeling and Optimizing RF Multipole Ion Traps
Fanghaenel, Sven; Asvany, Oskar; Schlemmer, Stephan
2016-06-01
Radio frequency (rf) ion traps are very well suited for spectroscopy experiments thanks to the long time storage of the species of interest in a well defined volume. The electrical potential of the ion trap is determined by the geometry of its electrodes and the applied voltages. In order to understand the behavior of trapped ions in realistic multipole traps it is necessary to characterize these trapping potentials. Commercial programs like SIMION or COMSOL, employing the finite difference and/or finite element method, are often used to model the electrical fields of the trap in order to design traps for various purposes, e.g. introducing light from a laser into the trap volume. For a controlled trapping of ions, e.g. for low temperature trapping, the time dependent electrical fields need to be known to high accuracy especially at the minimum of the effective (mechanical) potential. The commercial programs are not optimized for these applications and suffer from a number of limitations. Therefore, in our approach the boundary element method (BEM) has been employed in home-built programs to generate numerical solutions of real trap geometries, e.g. from CAD drawings. In addition the resulting fields are described by appropriate multipole expansions. As a consequence, the quality of a trap can be characterized by a small set of multipole parameters which are used to optimize the trap design. In this presentation a few example calculations will be discussed. In particular the accuracy of the method and the benefits of describing the trapping potentials via multipole expansions will be illustrated. As one important application heating effects of cold ions arising from non-ideal multipole fields can now be understood as a consequence of imperfect field configurations.
Fast and Adaptive Lossless On-Board Hyperspectral Data Compression System for Space Applications
Aranki, Nazeeh; Bakhshi, Alireza; Keymeulen, Didier; Klimesh, Matthew
2009-01-01
Efficient on-board lossless hyperspectral data compression reduces the data volume necessary to meet NASA and DoD limited downlink capabilities. The techniques also improves signature extraction, object recognition and feature classification capabilities by providing exact reconstructed data on constrained downlink resources. At JPL a novel, adaptive and predictive technique for lossless compression of hyperspectral data was recently developed. This technique uses an adaptive filtering method and achieves a combination of low complexity and compression effectiveness that far exceeds state-of-the-art techniques currently in use. The JPL-developed 'Fast Lossless' algorithm requires no training data or other specific information about the nature of the spectral bands for a fixed instrument dynamic range. It is of low computational complexity and thus well-suited for implementation in hardware, which makes it practical for flight implementations of pushbroom instruments. A prototype of the compressor (and decompressor) of the algorithm is available in software, but this implementation may not meet speed and real-time requirements of some space applications. Hardware acceleration provides performance improvements of 10x-100x vs. the software implementation (about 1M samples/sec on a Pentium IV machine). This paper describes a hardware implementation of the JPL-developed 'Fast Lossless' compression algorithm on a Field Programmable Gate Array (FPGA). The FPGA implementation targets the current state of the art FPGAs (Xilinx Virtex IV and V families) and compresses one sample every clock cycle to provide a fast and practical real-time solution for Space applications.
Fraisier, V; Clouvel, G; Jasaitis, A; Dimitrov, A; Piolot, T; Salamero, J
2015-09-01
Multiconfocal microscopy gives a good compromise between fast imaging and reasonable resolution. However, the low intensity of live fluorescent emitters is a major limitation to this technique. Aberrations induced by the optical setup, especially the mismatch of the refractive index and the biological sample itself, distort the point spread function and further reduce the amount of detected photons. Altogether, this leads to impaired image quality, preventing accurate analysis of molecular processes in biological samples and imaging deep in the sample. The amount of detected fluorescence can be improved with adaptive optics. Here, we used a compact adaptive optics module (adaptive optics box for sectioning optical microscopy), which was specifically designed for spinning disk confocal microscopy. The module overcomes undesired anomalies by correcting for most of the aberrations in confocal imaging. Existing aberration detection methods require prior illumination, which bleaches the sample. To avoid multiple exposures of the sample, we established an experimental model describing the depth dependence of major aberrations. This model allows us to correct for those aberrations when performing a z-stack, gradually increasing the amplitude of the correction with depth. It does not require illumination of the sample for aberration detection, thus minimizing photobleaching and phototoxicity. With this model, we improved both signal-to-background ratio and image contrast. Here, we present comparative studies on a variety of biological samples.
Fast pixel-wise adaptive visual tracking of non-rigid objects.
Duffner, Stefan; Garcia, Christophe
2017-03-01
In this paper, we present a new algorithm for realtime single-object tracking in videos in unconstrained environments. The algorithm comprises two different components that are trained "in one shot" at the first video frame: a detector that makes use of the generalised Hough transform with colour and gradient descriptors, and a probabilistic segmentation method based on global models for foreground and background colour distributions. Both components work at pixel level and are used for tracking in a combined way adapting each other in a cotraining manner. Moreover, we propose an adaptive shape model as well as a new probabilistic method for updating the scale of the tracker. Through effective model adaptation and segmentation, the algorithm is able to track objects that undergo rigid and non-rigid deformations and considerable shape and appearance variations. The proposed tracking method has been thoroughly evaluated on challenging benchmarks, and outperforms state-ofthe- art tracking methods designed for the same task. Finally, a very efficient implementation of the proposed models allows for extremely fast tracking.
Fast Adapting Ensemble: A New Algorithm for Mining Data Streams with Concept Drift
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Agustín Ortíz Díaz
2015-01-01
Full Text Available The treatment of large data streams in the presence of concept drifts is one of the main challenges in the field of data mining, particularly when the algorithms have to deal with concepts that disappear and then reappear. This paper presents a new algorithm, called Fast Adapting Ensemble (FAE, which adapts very quickly to both abrupt and gradual concept drifts, and has been specifically designed to deal with recurring concepts. FAE processes the learning examples in blocks of the same size, but it does not have to wait for the batch to be complete in order to adapt its base classification mechanism. FAE incorporates a drift detector to improve the handling of abrupt concept drifts and stores a set of inactive classifiers that represent old concepts, which are activated very quickly when these concepts reappear. We compare our new algorithm with various well-known learning algorithms, taking into account, common benchmark datasets. The experiments show promising results from the proposed algorithm (regarding accuracy and runtime, handling different types of concept drifts.
Multipole Traps as Tools in Environmental Studies
Mihalcea, Bogdan M; Giurgiu, Liviu C; Groza, Andreea; Surmeian, Agavni; Ganciu, Mihai; Filinov, Vladimir; Lapitsky, Dmitry; Deputatova, Lidiya; Vasilyak, Leonid; Pecherkin, Vladimir; Vladimirov, Vladimir; Syrovatka, Roman
2015-01-01
Trapping of microparticles, nanoparticles and aerosols is an issue of major interest for physics and chemistry. We present a setup intended for microparticle trapping in multipole linear Paul trap geometries, operating under Standard Ambient Temperature and Pressure (SATP) conditions. A 16-electrode linear trap geometry has been designed and tested, with an aim to confine a larger number of particles with respect to quadrupole traps and thus enhance the signal to noise ratio, as well as to study microparticle dynamical stability in electrodynamic fields. Experimental tests and numerical simulations suggest that multipole traps are very suited for high precision mass spectrometry measurements in case of different microparticle species or to identify the presence of certain aerosols and polluting agents in the atmosphere. Particle traps represent versatile tools for environment monitoring or for the study of many-body Coulomb systems and dusty plasmas.
Multipole invariants and non-Gaussianity
Land, K; Land, Kate; Magueijo, Joao
2004-01-01
We propose a framework for separating the information contained in the CMB multipoles, $a_{\\ell m}$, into its algebraically independent components. Thus we cleanly separate information pertaining to the power spectrum, non-Gaussianity and preferred axis effects. The formalism builds upon the recently proposed multipole vectors (Copi, Huterer & Starkman 2003; Schwarz & al 2004; Katz & Weeks 2004), and we elucidate a few features regarding these vectors, namely their lack of statistical independence for a Gaussian random process. In a few cases we explicitly relate our proposed invariants to components of the $n$-point correlation function (power spectrum, bispectrum). We find the invariants' distributions using a mixture of analytical and numerical methods. We also evaluate them for the co-added WMAP first year map.
THE HP-VERSION OF BEM-FAST CONVERGENCE, ADAPTIVITY AND EFFICIENT PRECONDITIONING
Institute of Scientific and Technical Information of China (English)
Ernst P.Stephan
2009-01-01
In this survey paper we report on recent developments of the hp-version of the boundary element method(BEM).As model problems we consider weakly singular and hypersingular integral equations of the first kind on a planar,open surface.We show that the Galerkin solutions (computed with the hp-version on geometric meshes) converge exponentially fast towards the exact solutions of the integral equations.An hp-adaptive algorithm is given and the implementation of the hp-version BEM is discussed together with the choice of efficient preconditioners for the ill-conditioned boundary element stiffness matrices.We also comment on the use of the hp-version BEM for solving Signorini contact problems in linear elasticity where the contact conditions are enforced only on the discrete set of Gauss-Lobatto points.Numerical results are presented which underline the theoretical results.
Fast simulation of transport and adaptive permeability estimation in porous media
Energy Technology Data Exchange (ETDEWEB)
Berre, Inga
2005-07-01
The focus of the thesis is twofold: Both fast simulation of transport in porous media and adaptive estimation of permeability are considered. A short introduction that motivates the work on these topics is given in Chapter 1. In Chapter 2, the governing equations for one- and two-phase flow in porous media are presented. Overall numerical solution strategies for the two-phase flow model are also discussed briefly. The concepts of streamlines and time-of-flight are introduced in Chapter 3. Methods for computing streamlines and time-of-flight are also presented in this chapter. Subsequently, in Chapters 4 and 5, the focus is on simulation of transport in a time-of-flight perspective. In Chapter 4, transport of fluids along streamlines is considered. Chapter 5 introduces a different viewpoint based on the evolution of isocontours of the fluid saturation. While the first chapters focus on the forward problem, which consists in solving a mathematical model given the reservoir parameters, Chapters 6, 7 and 8 are devoted to the inverse problem of permeability estimation. An introduction to the problem of identifying spatial variability in reservoir permeability by inversion of dynamic production data is given in Chapter 6. In Chapter 7, adaptive multiscale strategies for permeability estimation are discussed. Subsequently, Chapter 8 presents a level-set approach for improving piecewise constant permeability representations. Finally, Chapter 9 summarizes the results obtained in the thesis; in addition, the chapter gives some recommendations and suggests directions for future work. Part II In Part II, the following papers are included in the order they were completed: Paper A: A Streamline Front Tracking Method for Two- and Three-Phase Flow Including Capillary Forces. I. Berre, H. K. Dahle, K. H. Karlsen, and H. F. Nordhaug. In Fluid flow and transport in porous media: mathematical and numerical treatment (South Hadley, MA, 2001), volume 295 of Contemp. Math., pages 49
Fast binarized time-reversed adapted-perturbation (b-TRAP) optical focusing inside scattering media
Ma, Cheng; Liu, Yan; Wang, Lihong V
2015-01-01
Light scattering inhibits high-resolution optical imaging, manipulation and therapy deep inside biological tissue by preventing focusing. To form deep foci, wavefront-shaping and time-reversal techniques that break the optical diffusion limit have been developed. For in vivo applications, such focusing must provide high gain, high speed, and a large number of spatial modes. However, none of the previous techniques meet these requirements simultaneously. Here, we overcome this challenge by rapidly measuring the perturbed optical field within a single camera exposure followed by adaptively time-reversing the phase-binarized perturbation. Consequently, a phase-conjugated wavefront is synthesized within a millisecond, two orders of magnitude shorter than the digitally achieved record. We demonstrated real-time focusing in dynamic scattering media, and extended laser speckle contrast imaging to new depths. The unprecedented combination of fast response, high gain, and large mode count makes this work a major strid...
Centralized and Distributed Solutions for Fast Muting Adaptation in LTE-Advanced HetNets
DEFF Research Database (Denmark)
Soret, Beatriz; Pedersen, Klaus I.
2015-01-01
Enhanced Intercell Interference Coordination (eICIC) is known to provide promising performance benefits for LTE-Advanced Heterogeneous Networks. The use of eICIC facilitates more flexible inter-layer load balancing by means of small cell Range Extension (RE) and Almost Blank Subframes (ABS). Even...... though the eICIC configuration (RE and ABS) ideally should be instantaneously adapted to follow the fluctuations of the traffic and the channel conditions over time, previous studies have focused on slow intercell coordination. In this paper, we investigate fast dynamic eICIC solutions for centralized...... and distributed Radio Resource Management (RRM) architectures. The centralized RRM architecture assumes macro and Remote Radio Heads (RRHs) inter-connected via high-speed fronthaul connections, while the distributed architecture is based on traditional macro and pico cells deployments with X2 backhaul interface...
Fast ℓ1-regularized space-time adaptive processing using alternating direction method of multipliers
Qin, Lilong; Wu, Manqing; Wang, Xuan; Dong, Zhen
2017-04-01
Motivated by the sparsity of filter coefficients in full-dimension space-time adaptive processing (STAP) algorithms, this paper proposes a fast ℓ1-regularized STAP algorithm based on the alternating direction method of multipliers to accelerate the convergence and reduce the calculations. The proposed algorithm uses a splitting variable to obtain an equivalent optimization formulation, which is addressed with an augmented Lagrangian method. Using the alternating recursive algorithm, the method can rapidly result in a low minimum mean-square error without a large number of calculations. Through theoretical analysis and experimental verification, we demonstrate that the proposed algorithm provides a better output signal-to-clutter-noise ratio performance than other algorithms.
Nuclear photonics at ultra-high counting rates and higher multipole excitations
Energy Technology Data Exchange (ETDEWEB)
Thirolf, P. G.; Habs, D.; Filipescu, D.; Gernhaeuser, R.; Guenther, M. M.; Jentschel, M.; Marginean, N.; Pietralla, N. [Fakultaet f. Physik, Ludwig-Maximilians-Universitaet Muenchen, Garching (Germany); Fakultaet f. Physik, Ludwig-Maximilians-Universitaet Muenchen, Garching, Germany and Max-Planck-Institute f. Quantum Optics, Garching (Germany); IFIN-HH, Bucharest-Magurele (Romania); Physik Department E12,Technische Universitaet Muenchen, Garching (Germany); Max-Planck-Institute f. Quantum Optics, Garching (Germany); Institut Laue-Langevin, Grenoble (France); Physik Department E12,Technische Universitaet Muenchen, Garching (Germany); Institut f. Kernphysik, Technische Universitaet Darmstadt (Germany)
2012-07-09
Next-generation {gamma} beams from laser Compton-backscattering facilities like ELI-NP (Bucharest)] or MEGa-Ray (Livermore) will drastically exceed the photon flux presently available at existing facilities, reaching or even exceeding 10{sup 13}{gamma}/sec. The beam structure as presently foreseen for MEGa-Ray and ELI-NP builds upon a structure of macro-pulses ({approx}120 Hz) for the electron beam, accelerated with X-band technology at 11.5 GHz, resulting in a micro structure of 87 ps distance between the electron pulses acting as mirrors for a counterpropagating intense laser. In total each 8.3 ms a {gamma} pulse series with a duration of about 100 ns will impinge on the target, resulting in an instantaneous photon flux of about 10{sup 18}{gamma}/s, thus introducing major challenges in view of pile-up. Novel {gamma} optics will be applied to monochromatize the {gamma} beam to ultimately {Delta}E/E{approx}10{sup -6}. Thus level-selective spectroscopy of higher multipole excitations will become accessible with good contrast for the first time. Fast responding {gamma} detectors, e.g. based on advanced scintillator technology (e.g. LaBr{sub 3}(Ce)) allow for measurements with count rates as high as 10{sup 6}-10{sup 7}{gamma}/s without significant drop of performance. Data handling adapted to the beam conditions could be performed by fast digitizing electronics, able to sample data traces during the micro-pulse duration, while the subsequent macro-pulse gap of ca. 8 ms leaves ample time for data readout. A ball of LaBr{sub 3} detectors with digital readout appears to best suited for this novel type of nuclear photonics at ultra-high counting rates.
Multipole solutions in metric-affine gravity
Socorro, J; Macías, A; Mielke, E W; Socorro, José; Lämmerzahl, Claus; Macías, Alfredo; Mielke, Eckehard W.
1998-01-01
Above Planck energies, the spacetime might become non--Riemannian, as it is known fron string theory and inflation. Then geometries arise in which nonmetricity and torsion appear as field strengths, side by side with curvature. By gauging the affine group, a metric affine gauge theory emerges as dynamical framework. Here, by using the harmonic map ansatz, a new class of multipole like solutions in the metric affine gravity theory (MAG) is obtained.
Poloidal OHMIC heating in a multipole
Energy Technology Data Exchange (ETDEWEB)
Holly, D.J.
1982-01-01
The feasibility of using poloidal currents to heat plasmas confined by a multipole field has been examined experimentaly in Tokapole II. The machine is operated as a toroidal octupole, with a time-varying toroidal magnetic field driving poloidal plasma currents I/sub plasma/ - 20 kA to give densities n/sub e/ - 10/sup 13/ cm/sup -3/ and temperatures T/sub e/ - 30 eV.
DEFF Research Database (Denmark)
Zuidmeer-Jongejan, Laurian; Fernandez-Rivas, Montserrat; Poulsen, Lars K.
2012-01-01
ABSTRACT: The FAST project (Food Allergy Specific Immunotherapy) aims at the development of safe and effective treatment of food allergies, targeting prevalent, persistent and severe allergy to fish and peach. Classical allergen-specific immunotherapy (SIT), using subcutaneous injections with aqu......ABSTRACT: The FAST project (Food Allergy Specific Immunotherapy) aims at the development of safe and effective treatment of food allergies, targeting prevalent, persistent and severe allergy to fish and peach. Classical allergen-specific immunotherapy (SIT), using subcutaneous injections...... with aqueous food extracts may be effective but has proven to be accompanied by too many anaphylactic side-effects. FAST aims to develop a safe alternative by replacing food extracts with hypoallergenic recombinant major allergens as the active ingredients of SIT. Both severe fish and peach allergy are caused...... in depth serological and cellular immune analyses will be performed, allowing identification of novel biomarkers for monitoring treatment efficacy. FAST aims at improving the quality of life of food allergic patients by providing a safe and effective treatment that will significantly lower their threshold...
Fast Exact Euclidean Distance (FEED): A New Class of Adaptable Distance Transforms.
Schouten, Theo E; van den Broek, Egon L
2014-11-01
A new unique class of foldable distance transforms of digital images (DT) is introduced, baptized: Fast exact euclidean distance (FEED) transforms. FEED class algorithms calculate the DT starting-directly from the definition or rather its inverse. The principle of FEED class algorithms is introduced, followed by strategies for their efficient implementation. It is shown that FEED class algorithms unite properties of ordered propagation, raster scanning, and independent scanning DT. Moreover, FEED class algorithms shown to have a unique property: they can be tailored to the images under investigation. Benchmarks are conducted on both the Fabbri et al. data set and on a newly developed data set. Three baseline, three approximate, and three state-of-the-art DT algorithms were included, in addition to two implementations of FEED class algorithms. It illustrates that FEED class algorithms i) provide truly exact Euclidean DT; ii) do no suffer from disconnected Voronoi tiles, which is a unique feature for non-parallel but fast DT; iii) outperform any other approximate and exact Euclidean DT with its time complexity O(N), even after their optimization; and iv) are unequaled in that they can be adapted to the characteristics of the image class at hand.
Adaptive modified hough transform track initiator for HFSWR tracking of fast and small targets
Institute of Scientific and Technical Information of China (English)
Guo Rujiang; Yuan Yeshu; Quan Taifan
2005-01-01
High frequency surface wave radar (HFSWR)is well proved to have over the horizon (OTH) detection capability to weak aerial targets, such as concealed airplanes or cruise missiles. The most important problem of detection of fast and small targets using HFSWR is earlier warning, i.e. enlargement of detection range oftargets. Therefore, the detection threshold should be decreased as low as possible, but numerous false alarms are brought about at the same time.On this condition, conventional track initiation techniques, which normally require the probability of false alarm to be at the level of 10-6, will initiate enormous false tracks and lead to abnormaloperation of tracking system. An adaptive modified hough transform (AMHT) track initiator is proposed accordingly and the relation of detection range to the performance of track initiator is analyzed in this paper. Simulations are performed to confirm the capability of track initiation to fast and small targets in dense clutter by AMHT track initiator. The tolerable probability of false alarm of detector can reach the level of 10-3. And it performs better than track initiator based on modified hough transform (MHT).
Optimization of RF multipole ion trap geometries
Fanghänel, Sven; Asvany, Oskar; Schlemmer, Stephan
2017-02-01
Radio-frequency (rf) traps are ideal places to store cold ions for spectroscopic experiments. Specific multipole configurations are suited best for different applications but have to be modified to allow e.g. for a proper overlap of a laser beam waist with the ion cloud. Therefore the corresponding trapping fields should be shaped accordingly. To achieve this goal highly accurate electrical potentials of rf multipole traps and the resulting effective trapping potentials are calculated using the boundary element method (BEM). These calculations are used to evaluate imperfections and to optimize the field geometry. For that purpose the complex fields are reduced to a small set of multipole expansion coefficients. Desirable values for these coefficients are met by systematic changes of real trap dimensions from CAD designs. The effect of misalignment of a linear quadrupole, the optimization of an optically open Paul trap, the influence of steering electrodes (end electrode and ring electrode) on a 22-pole ion trap and the effect of the micro motion on the lowest reachable temperatures in such a trap are discussed.
Wijngaarden, Marjolein A; Bakker, Leontine E H; van der Zon, Gerard C; 't Hoen, Peter A C; van Dijk, Ko Willems; Jazet, Ingrid M; Pijl, Hanno; Guigas, Bruno
2014-11-15
During fasting, rapid metabolic adaptations are required to maintain energy homeostasis. This occurs by a coordinated regulation of energy/nutrient-sensing pathways leading to transcriptional activation and repression of specific sets of genes. The aim of the study was to investigate how short-term fasting affects whole body energy homeostasis and skeletal muscle energy/nutrient-sensing pathways and transcriptome in humans. For this purpose, 12 young healthy men were studied during a 24-h fast. Whole body glucose/lipid oxidation rates were determined by indirect calorimetry, and blood and skeletal muscle biopsies were collected and analyzed at baseline and after 10 and 24 h of fasting. As expected, fasting induced a time-dependent decrease in plasma insulin and leptin levels, whereas levels of ketone bodies and free fatty acids increased. This was associated with a metabolic shift from glucose toward lipid oxidation. At the molecular level, activation of the protein kinase B (PKB/Akt) and mammalian target of rapamycin pathways was time-dependently reduced in skeletal muscle during fasting, whereas the AMP-activated protein kinase activity remained unaffected. Furthermore, we report some changes in the phosphorylation and/or content of forkhead protein 1, sirtuin 1, and class IIa histone deacetylase 4, suggesting that these pathways might be involved in the transcriptional adaptation to fasting. Finally, transcriptome profiling identified genes that were significantly regulated by fasting in skeletal muscle at both early and late time points. Collectively, our study provides a comprehensive map of the main energy/nutrient-sensing pathways and transcriptomic changes during short-term adaptation to fasting in human skeletal muscle.
A Fast Variational Method for the Construction of Resolution Adaptive C-Smooth Molecular Surfaces.
Bajaj, Chandrajit L; Xu, Guoliang; Zhang, Qin
2009-05-01
We present a variational approach to smooth molecular (proteins, nucleic acids) surface constructions, starting from atomic coordinates, as available from the protein and nucleic-acid data banks. Molecular dynamics (MD) simulations traditionally used in understanding protein and nucleic-acid folding processes, are based on molecular force fields, and require smooth models of these molecular surfaces. To accelerate MD simulations, a popular methodology is to employ coarse grained molecular models, which represent clusters of atoms with similar physical properties by psuedo- atoms, resulting in coarser resolution molecular surfaces. We consider generation of these mixed-resolution or adaptive molecular surfaces. Our approach starts from deriving a general form second order geometric partial differential equation in the level-set formulation, by minimizing a first order energy functional which additionally includes a regularization term to minimize the occurrence of chemically infeasible molecular surface pockets or tunnel-like artifacts. To achieve even higher computational efficiency, a fast cubic B-spline C(2) interpolation algorithm is also utilized. A narrow band, tri-cubic B-spline level-set method is then used to provide C(2) smooth and resolution adaptive molecular surfaces.
Park, Eunjeong; Nam, Hyo Suk
2009-11-01
The need for fast treatment of patients in critical conditions motivates the use of mobile devices to provide prompt and consistent communication between hospitals and physicians. We propose a framework that supports ubiquitous access to medical systems using personalized mobile services and integrated medical systems. The proposed service-oriented medical framework provides dynamically composed services that are adapted to contextual variables such as the user's role, the network bandwidth, and resources available at mobile devices while supporting task allocation in distributed servers for massive resource-consuming services. It also manages accurate patient data by integrating local medical systems using medical information standards such as Digital Imaging and Communications in Medicine and Health Level 7. We have demonstrated the effectiveness of our framework by building a prototype of context-based adaptation of computerized tomography image retrieval for acute stroke treatments, which allows images to be viewed on mobile devices with WiMax wireless network. The proposed medical framework reduces hospital delays of patients and facilitates treatments in the absence of medical specialists.
Accurate Anomaly Detection using Adaptive Monitoring and Fast Switching in SDN
Directory of Open Access Journals (Sweden)
Gagandeep Garg
2015-10-01
Full Text Available —Software defined networking (SDN is rapidly evolving technology which provides a suitable environment for easily applying efficient monitoring policies on the networks. SDN provides a centralized control of the whole network from which monitoring of network traffic and resources can be done with ease. SDN promises to drastically simplify network monitoring and management and also enable rapid innovation of networks through network programmability. SDN architecture separates the control of the network from the forwarding devices. With the higher innovation provided by the SDN, security threats at open interfaces of SDN also increases significantly as an attacker can target the single centralized point i.e. controller, to attack the network. Hence, efficient adaptive monitoring and measurement is required to detect and prevent malicious activities inside the network. Various such techniques have already been proposed by many researchers. This paper describes a work of applying efficient adaptive monitoring on the network while maintaining the performance of the network considering monitoring overhead over the controller. This work represents effective bandwidth utilization for calculation of threshold range while applying anomaly detection rules for monitoring of the network. Accurate detection of anomalies is implemented and also allows valid users and applications to transfer the data without any restrictions inside the network which otherwise were considered as anomalies in previous technique due to fluctuation of data and narrow threshold window. The concept of fast switching also used to improve the processing speed and performance of the networks.
Danaila, Ionut; Hecht, Frédéric
2009-01-01
to appear in J. Computational Physics; Numerical computations of stationary states of fast-rotating Bose-Einstein condensates require high spatial resolution due to the presence of a large number of quantized vortices. In this paper we propose a low-order finite element method with mesh adaptivity by metric control, as an alternative approach to the commonly used high order (finite difference or spectral) approximation methods. The mesh adaptivity is used with two different numerical algorith...
Danaila, Ionut; Hecht, Frédéric
2010-01-01
Numerical computations of stationary states of fast-rotating Bose-Einstein condensates re- quire high spatial resolution due to the presence of a large number of quantized vortices. In this paper we propose a low-order finite element method with mesh adaptivity by metric con- trol, as an alternative approach to the commonly used high order (finite difference or spectral) approximation methods. The mesh adaptivity is used with two different numerical algorithms to compute stationary vortex sta...
Danaila, Ionut; Hecht, Frédéric
2010-01-01
to appear in J. Computational Physics; Numerical computations of stationary states of fast-rotating Bose-Einstein condensates require high spatial resolution due to the presence of a large number of quantized vortices. In this paper we propose a low-order finite element method with mesh adaptivity by metric control, as an alternative approach to the commonly used high order (finite difference or spectral) approximation methods. The mesh adaptivity is used with two different numerical algorith...
Least Square Approximation by Linear Combinations of Multi(Poles).
1983-04-01
ID-R134 069 LEAST SQUARE APPROXIMATION BY LINEAR COMBINATIONS OF i/i MULTI(POLES). 1U OHIO STATE UNIV COLUMBUS DEPT OF GEODETIC SCIENCE AND SURVEY...TR-83-0 117 LEAST SQUARE APPROXIMATION BY LINEAR COMBINATIONS OF (MULTI)POLES WILLI FREEDEN DEPARTMENT OF GEODETIC SCIENCE AND SURVEYING THE OHIO...Subtitle) S. TYPE OF REPORT & PERIOD COVERED LEAST SQUARE APPROXIMATION BY LINEAR Scientific Report No. 3 COMBINATIONS OF (MULTI)POLES 6. PERFORMING ORG
基于自适应渐消 EKF 的 FastSLAM 算法%FastSLAM algorithm based on adaptive fading extended Kalman filter
Institute of Scientific and Technical Information of China (English)
刘丹; 段建民; 于宏啸
2016-01-01
快速同时定位与建图（fast simultaneous localization and mapping，FastSLAM）算法的采样过程会带来粒子退化问题，为了改进算法的性能，提高估计精度，从研究粒子滤波的建议分布函数出发，提出基于自适应渐消扩展卡尔曼滤波（adaptive fading extended Kalman filter，AFEKF）的 FastSLAM 算法。该算法基于 FastSLAM的基本框架，利用 AFEKF 产生一种参数可自适应调节的建议分布函数，使其更接近移动机器人的后验位姿概率分布，减缓粒子集的退化。因此在同等粒子数的情况下，该算法有效提高了 SLAM 精度，以此减少所使用的粒子数，降低算法的复杂度。基于模拟器和标准数据集的实验仿真结果验证了该算法的有效性。%Sampling process often causes particle degradation in fast simultaneous localization and mapping (FastSLAM).From the point view of the proposal distribution function,a method named the FastSLAM based on adaptive fading extended Kalman filter is proposed to improve the performance of the algorithm and increase estimation accuracy.It uses the adaptive fading extended Kalman filter (AFEKF)to compute proposal distribu-tion based on the basic framework of FastSLAM,then this proposal distribution is more close to the posterior position of the mobile robot and the degree of particle degradation is reduced.In the case of the same number of particles,the algorithm can effectively improve the accuracy of SLAM.Hence it can reduce the number of parti-cles used in the algorithm and the complexity of the algorithm.The validity of the proposed algorithm is verified by the experimental simulation results based on the simulator and the standard data set.
Complex space multipole theory for scattering and diffraction problems
Lindell, Ismo V.; Nikoskinen, Keijo I.
1987-01-01
Classical multipole theory can be extended to multipoles located in complex space and applied in scattering and diffraction problems with the advantage that, if the point of the multipole is correctly chosen, the first term may give an order of magnitude better approximation to the source than when the multipole is in real space. The basic theory, given elsewhere, is presented here in a more straightforward manner and the improvement in radiation pattern is demonstrated for sources of constant polarization. Applications on scattering by spheroidal dielectric bodies and diffraction by a dielectric half-space are discussed.
Wu, Xiongwu; Pickard, Frank C.; Brooks, Bernard R.
2016-10-01
Isotropic periodic sum (IPS) is a method to calculate long-range interactions based on the homogeneity of simulation systems. By using the isotropic periodic images of a local region to represent remote structures, long-range interactions become a function of the local conformation. This function is called the IPS potential; it folds long-ranged interactions into a short-ranged potential and can be calculated as efficiently as a cutoff method. It has been demonstrated that the IPS method produces consistent simulation results, including free energies, as the particle mesh Ewald (PME) method. By introducing the multipole homogeneous background approximation, this work derives multipole IPS potentials, abbreviated as IPSMm, with m being the maximum order of multipole interactions. To efficiently calculate the multipole interactions in Cartesian space, we propose a vector relation that calculates a multipole tensor as a dot product of a radial potential vector and a directional vector. Using model systems with charges, dipoles, and/or quadrupoles, with and without polarizability, we demonstrate that multipole interactions of order m can be described accurately with the multipole IPS potential of order 2 or m - 1, whichever is higher. Through simulations with the multipole IPS potentials, we examined energetic, structural, and dynamic properties of the model systems and demonstrated that the multipole IPS potentials produce very similar results as PME with a local region radius (cutoff distance) as small as 6 Å.
Severe respiratory complex III defect prevents liver adaptation to prolonged fasting.
Kremer, Laura S; L'hermitte-Stead, Caroline; Lesimple, Pierre; Gilleron, Mylène; Filaut, Sandrine; Jardel, Claude; Haack, Tobias B; Strom, Tim M; Meitinger, Thomas; Azzouz, Hatem; Tebib, Neji; Ogier de Baulny, Hélène; Touati, Guy; Prokisch, Holger; Lombès, Anne
2016-08-01
Next generation sequencing approaches have tremendously improved the diagnosis of rare genetic diseases. It may however be faced with difficult clinical interpretation of variants. Inherited enzymatic diseases provide an invaluable possibility to evaluate the function of the defective enzyme in human cell biology. This is the case for respiratory complex III, which has 11 structural subunits and requires several assembly factors. An important role of complex III in liver function is suggested by its frequent impairment in human cases of genetic complex III defects. We report the case of a child with complex III defect and acute liver dysfunction with lactic acidosis, hypoglycemia, and hyperammonemia. Mitochondrial activities were assessed in liver and fibroblasts using spectrophotometric assays. Genetic analysis was done by exome followed by Sanger sequencing. Functional complementation of defective fibroblasts was performed using lentiviral transduction followed by enzymatic analyses and expression assays. Homozygous, truncating, mutations in LYRM7 and MTO1, two genes encoding essential mitochondrial proteins were found. Functional complementation of the complex III defect in fibroblasts demonstrated the causal role of LYRM7 mutations. Comparison of the patient's clinical history to previously reported patients with complex III defect due to nuclear DNA mutations, some actually followed by us, showed striking similarities allowing us to propose common pathophysiology. Profound complex III defect in liver does not induce actual liver failure but impedes liver adaptation to prolonged fasting leading to severe lactic acidosis, hypoglycemia, and hyperammonemia, potentially leading to irreversible brain damage. The diagnosis of rare genetic disease has been tremendously accelerated by the development of high throughput sequencing technology. In this paper we report the investigations that have led to identify LYRM7 mutations causing severe hepatic defect of respiratory
Zhang, Hao; Dong, Shuai; Guan, Weimin; Yi, Chuanzhi; He, Bo
In this paper, one-cycle compensation (OCC) method is proposed to realize adaptive control of fast-scale bifurcation in the peak current controlled buck-boost inverter because the proposed control method can adjust the slope of the integrator’s output voltage automatically through extracting a sinusoidal signal from the absolute value of the reference voltage. In order to reveal their underlying mechanisms of fast-scale bifurcations, a modified averaged model which can capture the sample-and-hold effect is derived in detail to describe the fast-scale dynamics of the buck-boost inverter. Based on the proposed model, a theoretical analysis is performed to identify both the fast-scale period-doubling bifurcation and the fast-scale Hopf one by judging in what way the poles loci move. It has been shown that the OCC method can be used not only to discover the unknown dynamical behaviors (i.e. fast-scale Hopf bifurcation), but also to enlarge the stable region in peak current controlled buck-boost inverter. In addition, the critical bifurcation angles and the parameter behavior boundary are given to verify the effectiveness of the adaptive bifurcation control method. Finally, PSpice circuit experiments are performed to verify the above theoretical and numerical results.
Fast 3D EM scattering and radiation solvers based on MLFMA
Institute of Scientific and Technical Information of China (English)
Hu Jun; Nie Zaiping; Lei Lin; Hu Jie; Gong Xiaodong; Zhao Huapeng
2008-01-01
As the fastest integral equation solver to date, the multilevel fast multipole algorithm (MLFMA)has been applied successfully to solve electromagnetic scattering and radiation from 3D electrically large objects.But for very large-scale problems, the storage and CPU time required in MLFMA are still expensive. Fast 3D electromagnetic scattering and radiation solvers are introduced based on MLFMA. A brief review of MLFMA is first given. Then, four fast methods including higher-order MLFMA (HO-MLFMA), fast far field approximation combined with adaptive ray propagation MLFMA (FAFFA-ARP-MLFMA), local MLFMA and parallel MLFMA are introduced. Some typical numerical results demonstrate the efficiency of these fast methods.
Kelvin transformation and inverse multipoles in electrostatics
Amaral, R L P G; Lemos, N A
2016-01-01
The inversion in the sphere or Kelvin transformation, which exchanges the radial coordinate for its inverse, is used as a guide to relate distinct electrostatic problems with dual features. The exact solution of some nontrivial problems are obtained through the mapping from simple highly symmetric systems. In particular, the concept of multipole expansion is revisited from a point of view opposed to the usual one: the sources are distributed in a region far from the origin while the electrostatic potential is described at points close to it.
A Fast Adaptive Artificial Neural Network Controller for Flexible Link Manipulators
Directory of Open Access Journals (Sweden)
Amin Riad Maouche
2016-01-01
Full Text Available This paper describes a hybrid approach to the problem of controlling flexible link manipulators in the dynamic phase of the trajectory. A flexible beam/arm is an appealing option for civil and military applications, such as space-based robot manipulators. However, flexibility brings with it unwanted oscillations and severe chattering which may even lead to an unstable system. To tackle these challenges, a novel control architecture scheme is presented. First, a neural network controller based on the robot’s dynamic equation of motion is elaborated. Its aim is to produce a fast and stable control of the joint position and velocity and damp the vibration of each arm. Then, an adaptive Cerebellar Model Articulation Controller (CMAC is implemented to balance unmodeled dynamics, enhancing the precision of the control. Efficiency of the new controller obtained is tested on a two-link flexible manipulator. Simulation results on a dynamic trajectory with a sinusoidal form show the effectiveness of the proposed control strategy.
A Fast Block-Matching Algorithm Using Smooth Motion Vector Field Adaptive Search Technique
Institute of Scientific and Technical Information of China (English)
LI Bo(李波); LI Wei(李炜); TU YaMing(涂亚明)
2003-01-01
In many video standards based on inter-frame compression such as H.26x and MPEG, block-matching algorithm has been widely adopted as the method for motion estimation because of its simplicity and effectiveness. Nevertheless, since motion estimation is very complex in computing. Fast algorithm for motion estimation has always been an important and attractive topic in video compression. From the viewpoint of making motion vector field smoother, this paper proposes a new algorithm SMVFAST. On the basis of motion correlation, it predicts the starting point by neighboring motion vectors according to their SADs. Adaptive search modes are usedin its search process through simply classifying motion activity. After discovering the ubiquitous ratio between the SADs of the collocated blocks in the consecutive frames, the paper proposes an effective half-stop criterion that can quickly stop the search process with good enough results.Experiments show that SMVFAST obtains almost the same results as the full search at very low computation cost, and outperforms MVFAST and PMVFAST in speed and quality, which are adopted by MPEG-4.
Multipole stack for the 4 rings of the PS Booster
1976-01-01
The PS Booster (originally 800 MeV, now 1.4 GeV) saw first beam in 1972, routine operation began in 1973. The strive for ever higher intensities required the addition of multipoles. Manufacture of 8 stacks of multipoles was launched in 1974, for installation in 1976. For details, see 7511120X.
Kartiwa, Iwa; Jung, Sang-Min; Hong, Moon-Ki; Han, Sang-Kook
2014-03-01
In this paper, we propose a novel fast adaptive approach that was applied to an OFDM-PON 20-km single fiber loopback transmission system to improve channel performance in term of stabilized BER below 2 × 10-3 and higher throughput beyond 10 Gb/s. The upstream transmission is performed through light source-seeded modulation using 1-GHz RSOA at the ONU. Experimental results indicated that the dynamic rate adaptation algorithm based on greedy Levin-Campello could be an effective solution to mitigate channel instability and data rate degradation caused by the Rayleigh back scattering effect and inefficient resource subcarrier allocation.
Reflection and refraction of multipole radiation by an interface.
Arnoldus, Henk F
2005-01-01
Reflection and refraction of electromagnetic multipole radiation by an interface is studied. The multipole can be electric or magnetic and is of arbitrary order (dipole, quadrupole). From the angular spectrum representation of the radiation emitted by the multipole, I have obtained the angular spectrum representations of the reflected and transmitted fields, which involve the Fresnel reflection and transmission coefficients. The intensity distribution in the far field is evaluated with the method of stationary phase. The result is very simple in appearance and can be expressed in terms of two auxiliary functions of a complex variable. By exchanging the Fresnel coefficients for s and p polarization, the result for an electric multipole can be obtained from the result for a magnetic multipole.
Microscopic Theory of Multipole Ordering in f-Electron Systems
Directory of Open Access Journals (Sweden)
Takashi Hotta
2012-01-01
Full Text Available A microscopic framework to determine multipole ordering in f-electron systems is provided on the basis of the standard quantum field theory. For the construction of the framework, a seven-orbital Hubbard Hamiltonian with strong spin-orbit coupling is adopted as a prototype model. A type of multipole and ordering vector is determined from the divergence of multipole susceptibility, which is evaluated in a random phase approximation. As an example of the application of the present framework, a multipole phase diagram on a three-dimensional simple cubic lattice is discussed for the case of n=2, where n denotes the average f-electron number per site. Finally, future problems concerning multipole ordering and fluctuations are briefly discussed.
The Multipole Vectors of WMAP, and their frames and invariants
Land, K; Land, Kate; Magueijo, Joao
2005-01-01
We investigate the Statistical Isotropy and Gaussianity of the CMB fluctuations, using a set of multipole vector functions capable of separating these two issues. In general a multipole is broken into a frame and $2\\ell-3$ ordered invariants. The multipole frame is found to be suitably sensitive to galactic cuts. We then apply our method to real WMAP datasets; a coadded masked map, the Internal Linear Combinations map, and Wiener filtered and cleaned maps. Taken as a whole, multipoles in the range $\\ell=2-10$ or $\\ell=2-20$ show consistency with statistical isotropy, as proved by the Kolmogorov test applied to the frame's Euler angles. This result in {\\it not} inconsistent with previous claims for a preferred direction in the sky for $\\ell=2,...5$. The multipole invariants also show overall consistency with Gaussianity apart from a few anomalies of limited significance (98%), listed at the end of this paper.
Multipole Stack for the 800 MeV PS Booster
1975-01-01
The 800 MeV PS Booster had seen first beam in its 4 superposed rings in 1972, routine operation began in 1973. In the strive for ever higher beam intensities, the need for additional multipole lenses became evident. After detailed studies, the manufacture of 8 stacks of multipoles was launched in 1974. Each stack consists of 4 superposed multipoles and each multipole has 4 concentric shells. From the innermost to the outermost shell, Type A contains octupole, skew-octupole, sextupole, skew-sextupole. Type B contains skew-octupole, skew-sextupole, vertical dipole, horizontal dipole. Completion of installation in 1976 opened the way to higher beam intensities. M. Battiaz is seen here with a multipole stack and its many electrical connections.
Multipole charge conservation and implications on electromagnetic radiation
Seraj, Ali
2016-01-01
It is shown that conserved charges associated with a specific subclass of gauge symmetries of Maxwell electrodynamics are proportional to the well known electric multipole moments. The symmetries are residual gauge transformations surviving after fixing the Lorenz gauge, and have nontrivial charge. These "Multipole charges" receive contributions both from the charged matter and electromagnetic fields. The former is nothing but the electric multipole moment of the source. In a stationary configuration, there is a novel equipartition relation between the two contributions. The multipole charge, while conserved, can freely interpolate between the source and the electromagnetic field, and therefore can be propagated with the radiation. Using the multipole charge conservation, we obtain infinite number of constraints over the radiation produced by the dynamics of charged matter.
A Fast and Robust Poisson-Boltzmann Solver Based on Adaptive Cartesian Grids
Boschitsch, Alexander H.; Fenley, Marcia O.
2011-01-01
An adaptive Cartesian grid (ACG) concept is presented for the fast and robust numerical solution of the 3D Poisson-Boltzmann Equation (PBE) governing the electrostatic interactions of large-scale biomolecules and highly charged multi-biomolecular assemblies such as ribosomes and viruses. The ACG offers numerous advantages over competing grid topologies such as regular 3D lattices and unstructured grids. For very large biological molecules and multi-biomolecule assemblies, the total number of grid-points is several orders of magnitude less than that required in a conventional lattice grid used in the current PBE solvers thus allowing the end user to obtain accurate and stable nonlinear PBE solutions on a desktop computer. Compared to tetrahedral-based unstructured grids, ACG offers a simpler hierarchical grid structure, which is naturally suited to multigrid, relieves indirect addressing requirements and uses fewer neighboring nodes in the finite difference stencils. Construction of the ACG and determination of the dielectric/ionic maps are straightforward, fast and require minimal user intervention. Charge singularities are eliminated by reformulating the problem to produce the reaction field potential in the molecular interior and the total electrostatic potential in the exterior ionic solvent region. This approach minimizes grid-dependency and alleviates the need for fine grid spacing near atomic charge sites. The technical portion of this paper contains three parts. First, the ACG and its construction for general biomolecular geometries are described. Next, a discrete approximation to the PBE upon this mesh is derived. Finally, the overall solution procedure and multigrid implementation are summarized. Results obtained with the ACG-based PBE solver are presented for: (i) a low dielectric spherical cavity, containing interior point charges, embedded in a high dielectric ionic solvent – analytical solutions are available for this case, thus allowing rigorous
3D fast adaptive correlation imaging for large-scale gravity data based on GPU computation
Chen, Z.; Meng, X.; Guo, L.; Liu, G.
2011-12-01
In recent years, large scale gravity data sets have been collected and employed to enhance gravity problem-solving abilities of tectonics studies in China. Aiming at the large scale data and the requirement of rapid interpretation, previous authors have carried out a lot of work, including the fast gradient module inversion and Euler deconvolution depth inversion ,3-D physical property inversion using stochastic subspaces and equivalent storage, fast inversion using wavelet transforms and a logarithmic barrier method. So it can be say that 3-D gravity inversion has been greatly improved in the last decade. Many authors added many different kinds of priori information and constraints to deal with nonuniqueness using models composed of a large number of contiguous cells of unknown property and obtained good results. However, due to long computation time, instability and other shortcomings, 3-D physical property inversion has not been widely applied to large-scale data yet. In order to achieve 3-D interpretation with high efficiency and precision for geological and ore bodies and obtain their subsurface distribution, there is an urgent need to find a fast and efficient inversion method for large scale gravity data. As an entirely new geophysical inversion method, 3D correlation has a rapid development thanks to the advantage of requiring no a priori information and demanding small amount of computer memory. This method was proposed to image the distribution of equivalent excess masses of anomalous geological bodies with high resolution both longitudinally and transversely. In order to tranform the equivalence excess masses into real density contrasts, we adopt the adaptive correlation imaging for gravity data. After each 3D correlation imaging, we change the equivalence into density contrasts according to the linear relationship, and then carry out forward gravity calculation for each rectangle cells. Next, we compare the forward gravity data with real data, and
Directory of Open Access Journals (Sweden)
WALTER DIAS JUNIOR
2016-01-01
Full Text Available ABSTRACT Adaptive changes of carbohydrate and lipid metabolism induced by 7, 15, 30, 60, 90, 150 and 200 days of fasting were investigated in red tilapia (Oreochromis sp.. Plasma glucose, lactate and free fatty acids (FFA levels, liver and muscle glycogen and total lipid contents and rates of FFA release from mesenteric adipose tissue (MAT were measured. Plasma glucose levels showed significant differences only after 90 days of fasting, when glycemia was 34% lower (50±5mg.dL-1 than fed fish values (74±1mg.dL-1, remaining relatively constant until 200 days of fasting. The content of liver glycogen ("15% in fed tilapia fell 40% in 7 days of food deprivation. In 60, 90 and 150 days of fasting, plasma FFA levels increased 49%, 64% and 90%, respectively, compared to fed fish values. In agreement with the increase in plasma FFA, fasting induced a clear increase in lipolytic activity of MAT incubated in vitro. Addition of isobutylmethylxanthine (cAMP-phosphodiesterase inhibitor and isoproterenol (non selective beta adrenergic agonist to the incubation medium induced a reduction of lipolysis in fasted fish, differently to what was observed in mammal adipose tissue. This study allowed a physiological assessment of red tilapia response to starvation.
Benoit, Commercon; Romain, Teyssier
2014-01-01
Implicit solvers present strong limitations when used on supercomputing facilities and in particular for adaptive mesh-refinement codes. We present a new method for implicit adaptive time-stepping on adaptive mesh refinement-grids and implementing it in the radiation hydrodynamics solver we designed for the RAMSES code for astrophysical purposes and, more particularly, for protostellar collapse. We briefly recall the radiation hydrodynamics equations and the adaptive time-stepping methodology used for hydrodynamical solvers. We then introduce the different types of boundary conditions (Dirichlet, Neumann, and Robin) that are used at the interface between levels and present our implementation of the new method in the RAMSES code. The method is tested against classical diffusion and radiation hydrodynamics tests, after which we present an application for protostellar collapse. We show that using Dirichlet boundary conditions at level interfaces is a good compromise between robustness and accuracy and that it ca...
Limitation of Multipoles in BOSS DR12 results
Lee, Seokcheon
2016-01-01
Recently, the power spectrum (PS) multipoles using the Baryon Oscillation Spectroscopic Survey (BOSS) Data Release 12 (DR12) sample are analyzed \\cite{160703150}. Even though the based model for the analysis is the so-called TNS quasi-linear model including the multipole up to the eighth order in the window function \\cite{TNS}, the analysis provides the multipoles up to the hexadecapole. Thus, one might be able to recover the galaxy PS by using the combination of multipoles to investigate the cosmology \\cite{0407214}. We provide the analytic form of this combination of multipoles of the quasi-linear PS including the Fingers of God (FoG) effect to recover the PS at the linear regime. In order to confirm the consistency of the multipole data, we compare the multipole ratios of the linear theory including the FoG effect with those of observation. The data of the ratio of quadrupole to monopole is consistent with that of the linear theory prediction even though the current observational error is too large to dist...
Multipole moments of bumpy black holes
Vigeland, Sarah J
2010-01-01
General relativity predicts the existence of black holes, compact objects whose spacetimes depend on only their mass and spin (the famous "no hair" theorem). As various observations probe deeper into the strong fields of black hole candidates, it is becoming possible to test this prediction. Previous work suggested that such tests can be performed by measuring whether the multipolar structure of black hole candidates has the form that general relativity demands, and introduced a family of "bumpy black hole" spacetimes to be used for making these measurements. These spacetimes are black holes with the "wrong" multipoles, where the deviation from general relativity depends on the spacetime's "bumpiness." In this paper, we show how to compute the Geroch-Hansen moments of a bumpy black hole, demonstrating that there is a clean mapping between the deviations used in the bumpy black hole formalism and the Geroch-Hansen moments. We also extend our previous results to define bumpy black holes whose {\\it current} mome...
Champagne, Cory D; Houser, Dorian S; Crocker, Daniel E
2005-03-01
During prolonged fasting physiological mechanisms defend lean tissue from catabolism. In the fasting state, glucose is derived solely from gluconeogenesis, requiring some catabolism of amino acids for gluconeogenic substrates. This creates a conflict in animals undergoing fasts concurrently with metabolically challenging activities. This study investigated glucose metabolism in fasting and developing neonatal elephant seals. Glucose production and glucose cycle activity were measured early (2 weeks) and late (6 weeks) in the postweaning fasting period. Additionally the role of regulatory hormones on glucose production and glucose cycle activity were investigated. Glucose cycle activity was highly variable throughout the study period, did not change over the fasting period, and was not correlated with insulin or glucagon level. Endogenous glucose production (EGP) was 2.80+/-0.65 mg kg(-1) min(-1) early and 2.21+/-0.12 during late fasting. Insulin to glucagon molar ratio decreased while cortisol levels increased over the fast (t=5.27, 2.84; P=0.003, 0.04; respectively). There was no relationship between EGP and hormone levels. The glucose production values measured in this study were high and exceeded the estimated gluconeogenic substrate available. These data suggest extensive glucose recycling via Cori cycle activity occurring in northern elephant seals, and we propose a possible justification for this recycling.
Transient impairment of the adaptive response to fasting in FXR-deficient mice
Cariou, B; van Harmelen, K; Duran-Sandoval, D; van Dijk, T; Grefhorst, A; Bouchaert, E; Fruchart, JC; Gonzalez, FJ; Kuipers, F; Staels, B
2005-01-01
The farnesoid X receptor (FXR) has been suggested to play a role in gluconeogenesis. To determine whether FXR modulates the response to fasting in vivo, FXR-deficient (FXR-/-) and wild-type mice were submitted to fasting for 48 h. Our results demonstrate that FXR modulates the kinetics of alteration
Transient impairment of the adaptive response to fasting in FXR-deficient mice
Cariou, B; van Harmelen, K; Duran-Sandoval, D; van Dijk, T; Grefhorst, A; Bouchaert, E; Fruchart, JC; Gonzalez, FJ; Kuipers, F; Staels, B
2005-01-01
The farnesoid X receptor (FXR) has been suggested to play a role in gluconeogenesis. To determine whether FXR modulates the response to fasting in vivo, FXR-deficient (FXR-/-) and wild-type mice were submitted to fasting for 48 h. Our results demonstrate that FXR modulates the kinetics of
A Fast, Locally Adaptive, Interactive Retrieval Algorithm for the Analysis of DIAL Measurements
Samarov, D. V.; Rogers, R.; Hair, J. W.; Douglass, K. O.; Plusquellic, D.
2010-12-01
Differential absorption light detection and ranging (DIAL) is a laser-based tool which is used for remote, range-resolved measurement of particular gases in the atmosphere, such as carbon-dioxide and methane. In many instances it is of interest to study how these gases are distributed over a region such as a landfill, factory, or farm. While a single DIAL measurement only tells us about the distribution of a gas along a single path, a sequence of consecutive measurements provides us with information on how that gas is distributed over a region, making DIAL a natural choice for such studies. DIAL measurements present a number of interesting challenges; first, in order to convert the raw data to concentration it is necessary to estimate the derivative along the path of the measurement. Second, as the distribution of gases across a region can be highly heterogeneous it is important that the spatial nature of the measurements be taken into account. Finally, since it is common for the set of collected measurements to be quite large it is important for the method to be computationally efficient. Existing work based on Local Polynomial Regression (LPR) has been developed which addresses the first two issues, but the issue of computational speed remains an open problem. In addition to the latter, another desirable property is to allow user input into the algorithm. In this talk we present a novel method based on LPR which utilizes a variant of the RODEO algorithm to provide a fast, locally adaptive and interactive approach to the analysis of DIAL measurements. This methodology is motivated by and applied to several simulated examples and a study out of NASA Langley Research Center (LaRC) looking at the estimation of aerosol extinction in the atmosphere. A comparison study of our method against several other algorithms is also presented. References Chaudhuri, P., Marron, J.S., Scale-space view of curve estimation, Annals of Statistics 28 (2000) 408-428. Duong, T., Cowling
Multipole Matrix of Green Function of Laplace Equation
Makuch, K.; Górka, P.
Multipole matrix elements of Green function of Laplace equation are calculated. The multipole matrix elements of Green function in electrostatics describe potential on a sphere which is produced by a charge distributed on the surface of a different (possibly overlapping) sphere of the same radius. The matrix elements are defined by double convolution of two spherical harmonics with the Green function of Laplace equation. The method we use relies on the fact that in the Fourier space the double convolution has simple form. Therefore we calculate the multipole matrix from its Fourier transform. An important part of our considerations is simplification of the three dimensional Fourier transformation of general multipole matrix by its rotational symmetry to the one-dimensional Hankel transformation.
QCD Multipole Expansion and Hadronic Transitions in Heavy Quarkonium Systems
Institute of Scientific and Technical Information of China (English)
KUANG Yu-ping
2006-01-01
We review the developments of the multipole expansion approach in quantum chromodynamics and its applications to hadronic transitions and some radiative decays of heavy quarkonia.Theoretical predictions are compared with updated experimental results.
DEFF Research Database (Denmark)
Cantó, Carles; Jiang, Lake Q; Deshmukh, Atul S
2010-01-01
During fasting and after exercise, skeletal muscle efficiently switches from carbohydrate to lipid as the main energy source to preserve glycogen stores and blood glucose levels for glucose-dependent tissues. Skeletal muscle cells sense this limitation in glucose availability and transform...... and lipid utilization genes. Deficient AMPK activity compromises SIRT1-dependent responses to exercise and fasting, resulting in impaired PGC-1alpha deacetylation and blunted induction of mitochondrial gene expression. Thus, we conclude that AMPK acts as the primordial trigger for fasting- and exercise...
Fast spacecraft adaptive attitude tracking control through immersion and invariance design
Wen, Haowei; Yue, Xiaokui; Li, Peng; Yuan, Jianping
2017-10-01
This paper presents a novel non-certainty-equivalence adaptive control method for the attitude tracking control problem of spacecraft with inertia uncertainties. The proposed immersion and invariance (I&I) based adaptation law provides a more direct and flexible approach to circumvent the limitations of the basic I&I method without employing any filter signal. By virtue of the adaptation high-gain equivalence property derived from the proposed adaptive method, the closed-loop adaptive system with a low adaptation gain could recover the high adaptation gain performance of the filter-based I&I method, and the resulting control torque demands during the initial transient has been significantly reduced. A special feature of this method is that the convergence of the parameter estimation error has been observably improved by utilizing an adaptation gain matrix instead of a single adaptation gain value. Numerical simulations are presented to highlight the various benefits of the proposed method compared with the certainty-equivalence-based control method and filter-based I&I control schemes.
Alsaadi, Fuad E.
2016-03-01
Optical wireless systems are promising candidates for next-generation indoor communication networks. Optical wireless technology offers freedom from spectrum regulations and, compared to current radio-frequency networks, higher data rates and increased security. This paper presents a fast adaptation method for multibeam angle and delay adaptation systems and a new spot-diffusing geometry, and also considers restrictions needed for complying with eye safety regulations. The fast adaptation algorithm reduces the computational load required to reconfigure the transmitter in the case of transmitter and/or receiver mobility. The beam clustering approach enables the transmitter to assign power to spots within the pixel's field of view (FOV) and increases the number of such spots. Thus, if the power per spot is restricted to comply with eye safety standards, the new approach, in which more spots are visible within the FOV of the pixel, leads to enhanced signal-to-noise ratio (SNR). Simulation results demonstrate that the techniques proposed in this paper lead to SNR improvements that enable reliable operation at data rates as high as 15 Gbit/s. These results are based on simulation and not on actual measurements or experiments.
A new adaptive fast motion estimation algorithm based on local motion similarity degree (LMSD)
Institute of Scientific and Technical Information of China (English)
LIU Long; HAN Chongzhao; BAI Yan
2005-01-01
In the motion vector field adaptive search technique (MVFAST) and the predictive motion vector field adaptive search technique (PMVFAST), the size of the largest motion vector from the three adjacent blocks (left, top, top-right) is compared with the threshold to select different search scheme. But a suitable search center and search pattern will not be selected in the adaptive search technique when the adjacent motion vectors are not coherent in local region. This paper presents an efficient adaptive search algorithm. The motion vector variation degree (MVVD) is considered a reasonable factor for adaptive search selection. By the relationship between local motion similarity degree (LMSD) and the variation degree of motion vector (MVVD), the motion vectors are classified as three categories according to corresponding LMSD; then different proposed search schemes are adopted for motion estimation. The experimental results show that the proposed algorithm has a significant computational speedup compared with MVFAST and PMVFAST algorithms, and offers a similar, even better performance.
Energy Technology Data Exchange (ETDEWEB)
Larsen, R
2009-10-17
High availability interlocks and controls are required for the ILC (International Linear Collider) L-Band high power RF stations. A new F3 (Fast Fault Finder) VME module has been developed to process both fast and slow interlocks using FPGA logic to detect the interlock trip excursions. This combination eliminates the need for separate PLC (Programmable Logic Controller) control of slow interlocks. Modules are chained together to accommodate as many inputs as needed. In the next phase of development the F3's will be ported to the new industry standard ATCA (Advanced Telecom Computing Architecture) crate (shelf) via a specially designed VME adapter module with IPMI (Intelligent Platform Management Interface). The goal is to demonstrate auto-failover and hot-swap for future partially redundant systems.
The symmetry group and harmonic potentials of an electrostatic generalized multipole
Institute of Scientific and Technical Information of China (English)
李钰
1995-01-01
The concept of an electrostatic ordinary multipole has been extended to an electrostatic generalized multipole which consists of a pair of close placed electrostatic ordinary multipole and electrostatic round lens. The definition of the M function for an electrostatic ordinary multipole has been extended to that of the M function for an electrostatic generalized multipole. The relation between the symmetry group of anelectrostaticordinary multipole and that of its corresponding electrostatic generalized multipole, and the relation between their constraint relations among their mth partial harmonic potentials have been derived. By analyzing some important electrostatic generalized multipoles, it is concluded that if an electrostatic deflector-multipole and an electrostatic round lens are placed close to each other , one cannot assert that this combined system can always be treated by the aberration theory of a combined focusing-deflection system.
Institute of Scientific and Technical Information of China (English)
肖立民; 许希斌; 姚彦
2001-01-01
Diversity combining technologies are analyzed for fastfrequency-hopping spread spectrum systems during partial-band noise jamming to develop a novel combining receiver called an Adaptive Threshold Clipper Combining Receiver (ATCCR). The optimal clipping level for an ATCCR is analyzed, computed, and compared with several other diversity combining technologies. Since the ATCCR can estimate the power of the jamming and the number of jammed frequency cells to adaptively adjust the clipper's threshold, the system performance using the adaptive threshold clipper combining technique can be greatly improved.
Kaon photoproduction in a multipole approach
Mart, T
2006-01-01
The recently published experimental data on K+Lambda photoproduction by the SAPHIR, CLAS, and LEPS collaborations are analyzed by means of a multipole approach. For this purpose the background amplitudes are constructed from appropriate Feynman diagrams in a gauge-invariant and crossing-symmetric fashion. The results of our calculation emphasize the lack of mutual consistency between the SAPHIR and CLAS data previously found by several independent research groups, whereas the LEPS data are found to be more consistent with those of CLAS. The use of SAPHIR and CLAS data, individually or simultaneously, leads to quite different resonance parameters which, therefore, could lead to different conclusions on ``missing resonances''. Fitting to the SAPHIR and LEPS data simultaneously indicates that the S_{11}(1650), P_{13}(1720), D_{13}(1700), D_{13}(2080), F_{15}(1680), and F_{15}(2000) resonances are required, while fitting to the combination of CLAS and LEPS data leads alternatively to the P_{13}(1900), D_{13}(2080...
Huidekoper, Hidde H; Duran, Marinus; Turkenburg, Marjolein; Ackermans, Mariëtte T; Sauerwein, Hans P; Wijburg, Frits A
2008-08-01
In order to study the pathophysiology of hypoglycemia in idiopathic ketotic hypoglycemia (KH), glucose kinetics during fasting in patients with KH were determined. A fasting test was performed in 12 children with previously documented KH. Besides determination of glucoregulatory hormones, plasma ketones, FFA and alanine, the rates of endogenous glucose production (EGP), glucose uptake, gluconeogenesis (GNG) and glycogenolysis (GGL) were quantified using the [6,6-(2)H(2)] glucose isotope dilution method and the deuterated water method. The five youngest subjects (age 2.5-3.9 years) became hypoglycemic (glucose supply of alanine. Our results support the hypothesis that KH represents the lower tail of the Gaussian distribution of fasting tolerance in children.
Role of PGC-1{alpha} in exercise and fasting induced adaptations in mouse liver
DEFF Research Database (Denmark)
Haase, Tobias Nørresø; Jørgensen, Stine Ringholm; Leick, Lotte
2011-01-01
The transcriptional coactivator peroxisome proliferator activated receptor (PPAR)-¿ coactivator (PGC)-1a plays a role in regulation of several metabolic pathways. By use of whole body PGC-1a knockout (KO) mice we investigated the role of PGC-1a in fasting, acute exercise and exercise training...... induced regulation of key proteins in gluconeogenesis and metabolism in the liver. In both wild type (WT) and PGC-1a KO mice liver, the mRNA content of the gluconeogenic proteins glucose-6-phosphatase (G6Pase) and phosphoenolpyruvate carboxykinase (PEPCK) was upregulated during fasting. Pyruvate...... carboxylase (PC) remained unchanged after fasting in WT mice, but was upregulated in PGC-1a KO mice. In response to a single exercise bout G6Pase mRNA was upregulated in both genotypes, whereas no significant changes were detected in PEPCK or PC mRNA. While G6Pase and PC protein remained unchanged, liver...
Orientation measurement based on magnetic inductance by the extended distributed multi-pole model.
Wu, Fang; Moon, Seung Ki; Son, Hungsun
2014-06-27
This paper presents a novel method to calculate magnetic inductance with a fast-computing magnetic field model referred to as the extended distributed multi-pole (eDMP) model. The concept of mutual inductance has been widely applied for position/orientation tracking systems and applications, yet it is still challenging due to the high demands in robust modeling and efficient computation in real-time applications. Recently, numerical methods have been utilized in design and analysis of magnetic fields, but this often requires heavy computation and its accuracy relies on geometric modeling and meshing that limit its usage. On the other hand, an analytical method provides simple and fast-computing solutions but is also flawed due to its difficulties in handling realistic and complex geometries such as complicated designs and boundary conditions, etc. In this paper, the extended distributed multi-pole model (eDMP) is developed to characterize a time-varying magnetic field based on an existing DMP model analyzing static magnetic fields. The method has been further exploited to compute the mutual inductance between coils at arbitrary locations and orientations. Simulation and experimental results of various configurations of the coils are presented. Comparison with the previously published data shows not only good performance in accuracy, but also effectiveness in computation.
Directory of Open Access Journals (Sweden)
Khosravinia H
2015-06-01
Full Text Available Four hundred and eighty mixed-sex broiler chicks aged 3 hrs after hatching were allotted according to a completely random design in a 6 × 2 × 2 factorial schedule into 2 groups of 12 replications of 20 chicks each. The main experimental factors were fasting for 0, 6, 12, 24, 36, and 48 hrs after chick placement, calcium gluconate (Ca-glu injection (0 and 0.6 mL and sex (male and female. Independent of sex, live body weight (BW of chicks decreased linearly (Y=43.36-0.109BW0h, r2=0.876 as neonatal fasting extended. Injection of 0.6 mL Ca-glu at 3 hrs post hatching did not affect weight loss of chicks. Yolk residuals (YR utilized linearly (Y=5.75-0.062YR, r2=0.956 by 0.062 g/hr in neonate fasted chicks showing no effect for Ca-glu injection. Neonatal fasting periods longer than 12 hrs increased liver weight (P. The mean absolute and proportional (% of BW0h breast and leg weight were reduced linearly as neonatal fasting extended (P. Serum glucose concentration in both sexes increased up to 6 hrs fasting, then reduced linearly to 150 mg/dL after 48 hrs feed withdrawal. The Ca-glu treatment influenced serum glucose level for a short period up to 6 hrs of fasting. Serum Ca concentration sharply increased up to three-fold in the birds received Ca-glu injection resulting in acute hypercalcemia, then decreased to the initial level after 24 hrs feed withdrawal. The mean serum level for creatinine, uric acid, cholesterol, HDL, albumins and total proteins significantly increased during the fasting periods of 6 to 48 hrs and significantly elevated in the birds received 0.6 mL Ca-glu injection compared with the non treated chicks. It was concluded that subcutaneous administration of 0.6 mL Ca-glu in the chick's neck did not suitably support the increased metabolic demands for glucose and calcium in feed deprived neonate chicks.
Taki, Hirofumi; Nagatani, Yoshiki; Matsukawa, Mami; Mizuno, Katsunori; Sato, Toru
2015-04-01
The received signal in through-transmission ultrasound measurements of cancellous bone consists of two longitudinal waves, called the fast and slow waves. Analysis of these fast and slow waves may reveal characteristics of the cancellous bone that would be good indicators of osteoporosis. Because the two waves often overlap, decomposition of the received signal is an important problem in the characterization of bone quality. This study proposes a fast and accurate decomposition method based on the frequency domain interferometry imaging method with a modified wave transfer function that uses a phase rotation parameter. The proposed method accurately characterized the fast and slow waves in the experimental study, and the residual intensity, which was normalized with respect to the received signal intensity, was less than -20 dB over the bone specimen thickness range from 6 to 15 mm. In the simulation study, the residual intensity was less than -20 dB over the specimen thickness range from 3 to 8 mm. Decomposition of a single received signal takes only 5 s using a laptop personal computer with a single central processing unit. The proposed method has great potential to provide accurate and rapid measurements of indicators of osteoporosis in cancellous bone.
Fast Exact Euclidean Distance (FEED) : A new class of adaptable distance transforms
Schouten, Theo E.; van den Broek, Egon L.
2014-01-01
A new unique class of foldable distance transforms of digital images (DT) is introduced, baptized: Fast Exact Euclidean Distance (FEED) transforms. FEED class algorithms calculate the DT startingdirectly from the definition or rather its inverse. The principle of FEED class algorithms is introduced,
Fast Exact Euclidean Distance (FEED): A new class of adaptable distance transforms
Schouten, Theo E.; Broek, van den Egon L.
2014-01-01
A new unique class of foldable distance transforms of digital images (DT) is introduced, baptized: Fast Exact Euclidean Distance (FEED) transforms. FEED class algorithms calculate the DT starting directly from the definition or rather its inverse. The principle of FEED class algorithms is introduced
Fast Exact Euclidean Distance (FEED): A new class of adaptable distance transforms
Schouten, Theo E.; van den Broek, Egon
2014-01-01
A new unique class of foldable distance transforms of digital images (DT) is introduced, baptized: Fast Exact Euclidean Distance (FEED) transforms. FEED class algorithms calculate the DT starting directly from the definition or rather its inverse. The principle of FEED class algorithms is
Metabolic and endocrine adaptations to fasting in lean and obese individuals
Wijngaarden, Marjolein A.
2015-01-01
In this thesis we examined several effects of fasting in lean and obese individuals. As expected, both the hormonal response as well as the metabolic shift from glucose towards lipid oxidation was impaired in obese individuals. At baseline, mitochondrial protein content in skeletal muscle of obese s
Metabolic and endocrine adaptations to fasting in lean and obese individuals
Wijngaarden, Marjolein A.
2015-01-01
In this thesis we examined several effects of fasting in lean and obese individuals. As expected, both the hormonal response as well as the metabolic shift from glucose towards lipid oxidation was impaired in obese individuals. At baseline, mitochondrial protein content in skeletal muscle of obese
Metabolic and endocrine adaptations to fasting in lean and obese individuals
Wijngaarden, Marjolein A.
2015-01-01
In this thesis we examined several effects of fasting in lean and obese individuals. As expected, both the hormonal response as well as the metabolic shift from glucose towards lipid oxidation was impaired in obese individuals. At baseline, mitochondrial protein content in skeletal muscle of obese s
Physically constrained voxel-based penalty adaptation for ultra-fast IMRT planning.
Wahl, Niklas; Bangert, Mark; Kamerling, Cornelis P; Ziegenhein, Peter; Bol, Gijsbert H; Raaymakers, Bas W; Oelfke, Uwe
2016-07-08
Conventional treatment planning in intensity-modulated radiation therapy (IMRT) is a trial-and-error process that usually involves tedious tweaking of optimization parameters. Here, we present an algorithm that automates part of this process, in particular the adaptation of voxel-based penalties within normal tissue. Thereby, the proposed algorithm explicitly considers a priori known physical limitations of photon irradiation. The efficacy of the developed algorithm is assessed during treatment planning studies comprising 16 prostate and 5 head and neck cases. We study the eradication of hot spots in the normal tissue, effects on target coverage and target conformity, as well as selected dose volume points for organs at risk. The potential of the proposed method to generate class solutions for the two indications is investigated. Run-times of the algorithms are reported. Physically constrained voxel-based penalty adaptation is an adequate means to automatically detect and eradicate hot-spots during IMRT planning while maintaining target coverage and conformity. Negative effects on organs at risk are comparably small and restricted to lower doses. Using physically constrained voxel-based penalty adaptation, it was possible to improve the generation of class solutions for both indications. Considering the reported run-times of less than 20 s, physically constrained voxel-based penalty adaptation has the potential to reduce the clinical workload during planning and automated treatment plan generation in the long run, facilitating adaptive radiation treatments.
Directory of Open Access Journals (Sweden)
Ninoska eCordero
2016-03-01
Full Text Available Listeria monocytogenes has become one of the principal foodborne pathogens worldwide. The capacity of this bacterium to grow at low temperatures has opened an interesting field of study in terms of the identification and classification of new strains of L. monocytogenes with different growth capacities at low temperatures. We determined the growth rate at 8 ºC of 110 strains of L. monocytogenes isolated from different food matrices. We identified a group of slow and fast strains according to their growth rate at 8 °C and performed a global transcriptomic assay in strains previously adapted to low temperature. We then identified shared and specific transcriptional mechanisms, metabolic and cellular processes of both groups; bacterial motility was the principal process capable of differentiating the adaptation capacity of L. monocytogenes strains with different ranges of tolerance to low temperatures. Strains belonging to the fast group were less motile, which may allow these strains to achieve a greater rate of proliferation at low temperature.
Fast Spectral Velocity Estimation Using Adaptive Techniques: In-Vivo Results
DEFF Research Database (Denmark)
Gran, Fredrik; Jakobsson, Andreas; Udesen, Jesper
2007-01-01
spectral Capon (BPC) method is based on a standard minimum variance technique adapted to account for both averaging over slowtime and depth. The Blood Amplitude and Phase Estimation technique (BAPES) is based on finding a set of matched filters (one for each velocity component of interest) and filtering...... the blood process over slow-time and averaging over depth to find the power spectral density estimate. In this paper, the two adaptive methods are explained, and performance Is assessed in controlled steady How experiments and in-vivo measurements. The three methods were tested on a circulating How rig...
Adaptive responses of GLUT-4 and citrate synthase in fast-twitch muscle of voluntary running rats
Henriksen, E. J.; Halseth, A. E.
1995-01-01
Glucose transporter (GLUT-4) protein, hexokinase, and citrate synthase (proteins involved in oxidative energy production from blood glucose catabolism) increase in response to chronically elevated neuromuscular activity. It is currently unclear whether these proteins increase in a coordinated manner in response to this stimulus. Therefore, voluntary wheel running (WR) was used to chronically overload the fast-twitch rat plantaris muscle and the myocardium, and the early time courses of adaptative responses of GLUT-4 protein and the activities of hexokinase and citrate synthase were characterized and compared. Plantaris hexokinase activity increased 51% after just 1 wk of WR, whereas GLUT-4 and citrate synthase were increased by 51 and 40%, respectively, only after 2 wk of WR. All three variables remained comparably elevated (+50-64%) through 4 wk of WR. Despite the overload of the myocardium with this protocol, no substantial elevations in these variables were observed. These findings are consistent with a coordinated upregulation of GLUT-4 and citrate synthase in the fast-twitch plantaris, but not in the myocardium, in response to this increased neuromuscular activity. Regulation of hexokinase in fast-twitch muscle appears to be uncoupled from regulation of GLUT-4 and citrate synthase, as increases in the former are detectable well before increases in the latter.
Cardiac magnetic source imaging based on current multipole model
Institute of Scientific and Technical Information of China (English)
Tang Fa-Kuan; Wang Qian; Hua Ning; Lu Hong; Tang Xue-Zheng; Ma Ping
2011-01-01
It is widely accepted that the heart current source can be reduced into a current multipole. By adopting three linear inverse methods, the cardiac magnetic imaging is achieved in this article based on the current multipole model expanded to the first order terms. This magnetic imaging is realized in a reconstruction plane in the centre of human heart, where the current dipole array is employed to represent realistic cardiac current distribution. The current multipole as testing source generates magnetic fields in the measuring plane, serving as inputs of cardiac magnetic inverse problem. In the heart-torso model constructed by boundary element method, the current multipole magnetic field distribution is compared with that in the homogeneous infinite space, and also with the single current dipole magnetic field distribution.Then the minimum-norm least-squares (MNLS) method, the optimal weighted pseuDOInverse method (OWPIM), and the optimal constrained linear inverse method (OCLIM) are selected as the algorithms for inverse computation based on current multipole model innovatively, and the imaging effects of these three inverse methods are compared. Besides,two reconstructing parameters, residual and mean residual, are also discussed, and their trends under MNLS, OWPIM and OCLIM each as a function of SNR are obtained and compared.
Fast heating and cooling in nanoimprint using a spring-loaded adapter in a preheated press
DEFF Research Database (Denmark)
Schift, Helmut; Bellini, Sandro; Gobrecht, Jens
2007-01-01
By using a spring-loaded adapter, instant heating and cooling of wafer-type substrates was implemented in standard hot embossing equipment. This was possible by using the well-known concept of a clamped stack of stamp and substrate, pre-assembled in an alignment fixture. A number of thermoplastic...
Optimal control of gene expression for fast proteome adaptation to environmental change.
Pavlov, Michael Y; Ehrenberg, Måns
2013-12-17
Bacterial populations growing in a changing world must adjust their proteome composition in response to alterations in the environment. Rapid proteome responses to growth medium changes are expected to increase the average growth rate and fitness value of these populations. Little is known about the dynamics of proteome change, e.g., whether bacteria use optimal strategies of gene expression for rapid proteome adjustments and if there are lower bounds to the time of proteome adaptation in response to growth medium changes. To begin answering these types of questions, we modeled growing bacteria as stoichiometrically coupled networks of metabolic pathways. These are balanced during steady-state growth in a constant environment but are initially unbalanced after rapid medium shifts due to a shortage of enzymes required at higher concentrations in the new environment. We identified an optimal strategy for rapid proteome adjustment in the absence of protein degradation and found a lower bound to the time of proteome adaptation after medium shifts. This minimal time is determined by the ratio between the Kullback-Leibler distance from the pre- to the postshift proteome and the postshift steady-state growth rate. The dynamics of optimally controlled proteome adaptation has a simple analytical solution. We used detailed numerical modeling to demonstrate that realistic bacterial control systems can emulate this optimal strategy for rapid proteome adaptation. Our results may provide a conceptual link between the physiology and population genetics of growing bacteria.
Michels, M.A.J.; Suttorp, L.G.
1972-01-01
The multipole expansion of the retarded interatomic dispersion energy is evaluated in the spherical-tensor formalism. The multipole expansion of the electrostatic dispersion energy follows as a special case.
Advanced multipoles for accelerator magnets theoretical analysis and their measurement
Schnizer, Pierre
2017-01-01
This monograph presents research on the transversal beam dynamics of accelerators and evaluates and describes the respective magnetic field homogeneity. The widely used cylindrical circular multipoles have disadvantages for elliptical apertures or curved trajectories, and the book also introduces new types of advanced multipole magnets, detailing their application, as well as the numerical data and measurements obtained. The research presented here provides more precise descriptions of the field and better estimates of the beam dynamics. Moreover, the effects of field inhomogeneity can be estimated with higher precision than before. These findings are further elaborated to demonstrate their usefulness for real magnets and accelerator set ups, showing their advantages over cylindrical circular multipoles. The research findings are complemented with data obtained from the new superconducting beam guiding magnet models (SIS100) for the FAIR (Facility for Antiproton and Ion Research) project. Lastly, the book...
Research on fast real-time adaptive audio mixing in multimedia conference
Institute of Scientific and Technical Information of China (English)
FAN Xing; GU Wei-kang; YE Xiu-qing
2005-01-01
In multimedia conference, the capability of audio processing is basic and requires more for real-time criteria. In this article, we categorize and analyze the schemes, and provide several multipoint speech audio mixing schemes using weighted algorithm, which meet the demand of practical needs for real-time multipoint speech mixing, for which the ASW and AEW schemes are especially recommended. Applying the adaptive algorithms, the high-performance schemes we provide do not use the saturation operation widely used in multimedia processing. Therefore, no additional noise will be added to the output. The above adaptive algorithms have relatively low computational complexity and good hearing perceptibility. The schemes are designed for parallel processing, and can be easily implemented with hardware, such as DSPs, and widely applied in multimedia conference systems.
Analysis of the diamagnetic effect in multipole Galatea traps
Bishaev, A. M.; Bugrova, A. I.; Gavrikov, M. B.; Kozintseva, M. V.; Lipatov, A. S.; Savel'ev, V. V.; Sigov, A. S.; Smirnov, P. G.; Tarelkin, I. A.; Khramtsov, P. P.
2013-04-01
The toroidal current emerging after the injection of a plasmoid through the magnetic shell of the Trimyx-3M (microwave) multipole trap is measured using the Rogowski loop. This current is due to diamagnetism of the plasma. The relation between the diamagnetic current and the maximal plasma pressure produced at the magnetic field separatrix is obtained. It is shown hence that magnetic measurements in a multi-pole trap for a known concentration make it possible to determine the plasma temperature in the trap and the energy confinement time.
Spiralling solitons and multipole localized modes in nonlocal nonlinear media
DEFF Research Database (Denmark)
Buccoliero, Daniel; Lopez-Aguayo, Servando; Skupin, Stefan
2007-01-01
We analyze the propagation of rotating multi-soliton localized structures in optical media with spatially nonlocal nonlinearity. We demonstrate that nonlocality stabilizes the azimuthal breakup of rotating dipole as well as multipole localized soliton modes. We compare the results for two differe...... models of nonlocal nonlinearity and suggest that the stabilization mechanism is a generic property of a spatial nonlocal nonlinear response independent of its particular functional form.......We analyze the propagation of rotating multi-soliton localized structures in optical media with spatially nonlocal nonlinearity. We demonstrate that nonlocality stabilizes the azimuthal breakup of rotating dipole as well as multipole localized soliton modes. We compare the results for two different...
A genetic algorithm for optimizing multi-pole Debye models of tissue dielectric properties
Clegg, J.; Robinson, M. P.
2012-10-01
Models of tissue dielectric properties (permittivity and conductivity) enable the interactions of tissues and electromagnetic fields to be simulated, which has many useful applications in microwave imaging, radio propagation, and non-ionizing radiation dosimetry. Parametric formulae are available, based on a multi-pole model of tissue dispersions, but although they give the dielectric properties over a wide frequency range, they do not convert easily to the time domain. An alternative is the multi-pole Debye model which works well in both time and frequency domains. Genetic algorithms are an evolutionary approach to optimization, and we found that this technique was effective at finding the best values of the multi-Debye parameters. Our genetic algorithm optimized these parameters to fit to either a Cole-Cole model or to measured data, and worked well over wide or narrow frequency ranges. Over 10 Hz-10 GHz the best fits for muscle, fat or bone were each found for ten dispersions or poles in the multi-Debye model. The genetic algorithm is a fast and effective method of developing tissue models that compares favourably with alternatives such as the rational polynomial fit.
A genetic algorithm for optimizing multi-pole Debye models of tissue dielectric properties.
Clegg, J; Robinson, M P
2012-10-01
Models of tissue dielectric properties (permittivity and conductivity) enable the interactions of tissues and electromagnetic fields to be simulated, which has many useful applications in microwave imaging, radio propagation, and non-ionizing radiation dosimetry. Parametric formulae are available, based on a multi-pole model of tissue dispersions, but although they give the dielectric properties over a wide frequency range, they do not convert easily to the time domain. An alternative is the multi-pole Debye model which works well in both time and frequency domains. Genetic algorithms are an evolutionary approach to optimization, and we found that this technique was effective at finding the best values of the multi-Debye parameters. Our genetic algorithm optimized these parameters to fit to either a Cole-Cole model or to measured data, and worked well over wide or narrow frequency ranges. Over 10 Hz-10 GHz the best fits for muscle, fat or bone were each found for ten dispersions or poles in the multi-Debye model. The genetic algorithm is a fast and effective method of developing tissue models that compares favourably with alternatives such as the rational polynomial fit.
A fast image super-resolution algorithm using an adaptive Wiener filter.
Hardie, Russell
2007-12-01
A computationally simple super-resolution algorithm using a type of adaptive Wiener filter is proposed. The algorithm produces an improved resolution image from a sequence of low-resolution (LR) video frames with overlapping field of view. The algorithm uses subpixel registration to position each LR pixel value on a common spatial grid that is referenced to the average position of the input frames. The positions of the LR pixels are not quantized to a finite grid as with some previous techniques. The output high-resolution (HR) pixels are obtained using a weighted sum of LR pixels in a local moving window. Using a statistical model, the weights for each HR pixel are designed to minimize the mean squared error and they depend on the relative positions of the surrounding LR pixels. Thus, these weights adapt spatially and temporally to changing distributions of LR pixels due to varying motion. Both a global and spatially varying statistical model are considered here. Since the weights adapt with distribution of LR pixels, it is quite robust and will not become unstable when an unfavorable distribution of LR pixels is observed. For translational motion, the algorithm has a low computational complexity and may be readily suitable for real-time and/or near real-time processing applications. With other motion models, the computational complexity goes up significantly. However, regardless of the motion model, the algorithm lends itself to parallel implementation. The efficacy of the proposed algorithm is demonstrated here in a number of experimental results using simulated and real video sequences. A computational analysis is also presented.
Collaborative Software Development in Support of Fast Adaptive AeroSpace Tools (FAAST)
Kleb, William L.; Nielsen, Eric J.; Gnoffo, Peter A.; Park, Michael A.; Wood, William A.
2003-01-01
A collaborative software development approach is described. The software product is an adaptation of proven computational capabilities combined with new capabilities to form the Agency's next generation aerothermodynamic and aerodynamic analysis and design tools. To efficiently produce a cohesive, robust, and extensible software suite, the approach uses agile software development techniques; specifically, project retrospectives, the Scrum status meeting format, and a subset of Extreme Programming's coding practices are employed. Examples are provided which demonstrate the substantial benefits derived from employing these practices. Also included is a discussion of issues encountered when porting legacy Fortran 77 code to Fortran 95 and a Fortran 95 coding standard.
Fast adaptive principal component extraction based on a generalized energy function
Institute of Scientific and Technical Information of China (English)
欧阳缮; 保铮; 廖桂生
2003-01-01
By introducing an arbitrary diagonal matrix, a generalized energy function (GEF) is proposed for searching for the optimum weights of a two layer linear neural network. From the GEF, we derive a recur- sive least squares (RLS) algorithm to extract in parallel multiple principal components of the input covari-ance matrix without designing an asymmetrical circuit. The local stability of the GEF algorithm at the equilibrium is analytically verified. Simulation resultsshow that the GEF algorithm for parallel multiple principal components extraction exhibits the fast convergence and has the improved robustness resis- tance tothe eigenvalue spread of the input covariance matrix as compared to the well-known lateral inhi- bition model (APEX) and least mean square error reconstruction(LMSER) algorithms.
Fast Total-Variation Image Deconvolution with Adaptive Parameter Estimation via Split Bregman Method
Directory of Open Access Journals (Sweden)
Chuan He
2014-01-01
Full Text Available The total-variation (TV regularization has been widely used in image restoration domain, due to its attractive edge preservation ability. However, the estimation of the regularization parameter, which balances the TV regularization term and the data-fidelity term, is a difficult problem. In this paper, based on the classical split Bregman method, a new fast algorithm is derived to simultaneously estimate the regularization parameter and to restore the blurred image. In each iteration, the regularization parameter is refreshed conveniently in a closed form according to Morozov’s discrepancy principle. Numerical experiments in image deconvolution show that the proposed algorithm outperforms some state-of-the-art methods both in accuracy and in speed.
Directory of Open Access Journals (Sweden)
Lars Baudzus
2016-08-01
Full Text Available We present a comprehensive study on how to design and fabricate low loss electro-optic phase shifters based on an electro-optic polymer and the silicon nitride and silicon oxynitride waveguide material systems. The loss mechanisms of phase shifters with an electro-optic (EO polymer cladding are analyzed in detail and design solutions to achieve lowest losses are presented. In order to verify the low loss design a proof of concept prototype phase shifter was fabricated, which exhibits an attenuation of 0.8 dB/cm at 1550 nm and an electro-optic efficiency factor of 27%. Furthermore, the potential of this class of phase shifters is evaluated in numerical simulations, from which the optimal design parameters and achievable figures of merit were derived. The presented phase shifter design has its potential for application in fast adaptive multi stage devices for optical signal processing.
Olariu, S.; Schwing, J.; Zhang, J.
1991-01-01
A bus system that can change dynamically to suit computational needs is referred to as reconfigurable. We present a fast adaptive convex hull algorithm on a two-dimensional processor array with a reconfigurable bus system (2-D PARBS, for short). Specifically, we show that computing the convex hull of a planar set of n points taken O(log n/log m) time on a 2-D PARBS of size mn x n with 3 less than or equal to m less than or equal to n. Our result implies that the convex hull of n points in the plane can be computed in O(1) time in a 2-D PARBS of size n(exp 1.5) x n.
A fast and efficient adaptive threshold rate control scheme for remote sensing images.
Chen, Xiao; Xu, Xiaoqing
2012-01-01
The JPEG2000 image compression standard is ideal for processing remote sensing images. However, its algorithm is complex and it requires large amounts of memory, making it difficult to adapt to the limited transmission and storage resources necessary for remote sensing images. In the present study, an improved rate control algorithm for remote sensing images is proposed. The required coded blocks are sorted downward according to their numbers of bit planes prior to entropy coding. An adaptive threshold computed from the combination of the minimum number of bit planes, along with the minimum rate-distortion slope and the compression ratio, is used to truncate passes of each code block during Tier-1 encoding. This routine avoids the encoding of all code passes and improves the coding efficiency. The simulation results show that the computational cost and working buffer memory size of the proposed algorithm reach only 18.13 and 7.81%, respectively, of the same parameters in the postcompression rate distortion algorithm, while the peak signal-to-noise ratio across the images remains almost the same. The proposed algorithm not only greatly reduces the code complexity and buffer requirements but also maintains the image quality.
GPU-based ultra-fast direct aperture optimization for online adaptive radiation therapy
Men, Chunhua; Jiang, Steve B
2010-01-01
Online adaptive radiation therapy (ART) has great promise to significantly reduce normal tissue toxicity and/or improve tumor control through real-time treatment adaptations based on the current patient anatomy. However, the major technical obstacle for clinical realization of online ART, namely the inability to achieve real-time efficiency in treatment re-planning, has yet to be solved. To overcome this challenge, this paper presents our work on the implementation of an intensity modulated radiation therapy (IMRT) direct aperture optimization (DAO) algorithm on graphics processing unit (GPU) based on our previous work on CPU. We formulate the DAO problem as a large-scale convex programming problem, and use an exact method called column generation approach to deal with its extremely large dimensionality on GPU. Five 9-field prostate and five 5-field head-and-neck IMRT clinical cases with 5\\times5 mm2 beamlet size and 2.5\\times2.5\\times2.5 mm3 voxel size were used to evaluate our algorithm on GPU. It takes onl...
SIRT1 Gain of Function Does Not Mimic or Enhance the Adaptations to Intermittent Fasting.
Boutant, Marie; Kulkarni, Sameer S; Joffraud, Magali; Raymond, Frédéric; Métairon, Sylviane; Descombes, Patrick; Cantó, Carles
2016-03-08
Caloric restriction (CR) has been shown to prevent the onset of insulin resistance and to delay age-related physiological decline in mammalian organisms. SIRT1, a NAD(+)-dependent deacetylase enzyme, has been suggested to mediate the adaptive responses to CR, leading to the speculation that SIRT1 activation could be therapeutically used as a CR-mimetic strategy. Here, we used a mouse model of moderate SIRT1 overexpression to test whether SIRT1 gain of function could mimic or boost the metabolic benefits induced by every-other-day feeding (EODF). Our results indicate that SIRT1 transgenesis does not affect the ability of EODF to decrease adiposity and improve insulin sensitivity. Transcriptomic analyses revealed that SIRT1 transgenesis and EODF promote very distinct adaptations in individual tissues, some of which can be even be metabolically opposite, as in brown adipose tissue. Therefore, whereas SIRT1 overexpression and CR both improve glucose metabolism and insulin sensitivity, the etiologies of these benefits are largely different.
Goldman, S. P.; Turnbull, D.; Johnson, C.; Chen, J. Z.; Battista, J. J.
2009-05-01
A fast, accurate and stable optimization algorithm is very important for inverse planning of intensity-modulated radiation therapy (IMRT), and for implementing dose-adaptive radiotherapy in the future. Conventional numerical search algorithms with positive beam weight constraints generally require numerous iterations and may produce suboptimal dose results due to trapping in local minima regions of the objective function landscape. A direct solution of the inverse problem using conventional quadratic objective functions without positive beam constraints is more efficient but it will result in unrealistic negative beam weights. We review here a direct solution of the inverse problem that is efficient and does not yield unphysical negative beam weights. In fast inverse dose optimization (FIDO) method the objective function for the optimization of a large number of beamlets is reformulated such that the optimization problem is reducible to a linear set of equations. The optimal set of intensities is then found through a matrix inversion, and negative beamlet intensities are avoided without the need for externally imposed ad hoc conditions. In its original version [S. P. Goldman, J. Z. Chen, and J. J. Battista, in Proceedings of the XIVth International Conference on the Use of Computers in Radiation Therapy, 2004, pp. 112-115; S. P. Goldman, J. Z. Chen, and J. J. Battista, Med. Phys. 32, 3007 (2005)], FIDO was tested on single two-dimensional computed tomography (CT) slices with sharp KERMA beams without scatter, in order to establish a proof of concept which demonstrated that FIDO could be a viable method for the optimization of cancer treatment plans. In this paper we introduce the latest advancements in FIDO that now include not only its application to three-dimensional volumes irradiated by beams with full scatter but include as well a complete implementation of clinical dose-volume constraints including maximum and minimum dose as well as equivalent uniform dose
Fast and intuitive programming of adaptive laser cutting of lace enabled by machine vision
Vaamonde, Iago; Souto-López, Álvaro; García-Díaz, Antón
2015-07-01
A machine vision system has been developed, validated, and integrated in a commercial laser robot cell. It permits an offline graphical programming of laser cutting of lace. The user interface allows loading CAD designs and aligning them with images of lace pieces. Different thread widths are discriminated to generate proper cutting program templates. During online operation, the system aligns CAD models of pieces and lace images, pre-checks quality of lace cuts and adapts laser parameters to thread widths. For pieces detected with the required quality, the program template is adjusted by transforming the coordinates of every trajectory point. A low-cost lace feeding system was also developed for demonstration of full process automation.
Adaptive GDDA-BLAST: fast and efficient algorithm for protein sequence embedding.
Directory of Open Access Journals (Sweden)
Yoojin Hong
Full Text Available A major computational challenge in the genomic era is annotating structure/function to the vast quantities of sequence information that is now available. This problem is illustrated by the fact that most proteins lack comprehensive annotations, even when experimental evidence exists. We previously theorized that embedded-alignment profiles (simply "alignment profiles" hereafter provide a quantitative method that is capable of relating the structural and functional properties of proteins, as well as their evolutionary relationships. A key feature of alignment profiles lies in the interoperability of data format (e.g., alignment information, physio-chemical information, genomic information, etc.. Indeed, we have demonstrated that the Position Specific Scoring Matrices (PSSMs are an informative M-dimension that is scored by quantitatively measuring the embedded or unmodified sequence alignments. Moreover, the information obtained from these alignments is informative, and remains so even in the "twilight zone" of sequence similarity (<25% identity. Although our previous embedding strategy was powerful, it suffered from contaminating alignments (embedded AND unmodified and high computational costs. Herein, we describe the logic and algorithmic process for a heuristic embedding strategy named "Adaptive GDDA-BLAST." Adaptive GDDA-BLAST is, on average, up to 19 times faster than, but has similar sensitivity to our previous method. Further, data are provided to demonstrate the benefits of embedded-alignment measurements in terms of detecting structural homology in highly divergent protein sequences and isolating secondary structural elements of transmembrane and ankyrin-repeat domains. Together, these advances allow further exploration of the embedded alignment data space within sufficiently large data sets to eventually induce relevant statistical inferences. We show that sequence embedding could serve as one of the vehicles for measurement of low
Adaptive, fast walking in a biped robot under neuronal control and learning.
Directory of Open Access Journals (Sweden)
Poramate Manoonpong
2007-07-01
Full Text Available Human walking is a dynamic, partly self-stabilizing process relying on the interaction of the biomechanical design with its neuronal control. The coordination of this process is a very difficult problem, and it has been suggested that it involves a hierarchy of levels, where the lower ones, e.g., interactions between muscles and the spinal cord, are largely autonomous, and where higher level control (e.g., cortical arises only pointwise, as needed. This requires an architecture of several nested, sensori-motor loops where the walking process provides feedback signals to the walker's sensory systems, which can be used to coordinate its movements. To complicate the situation, at a maximal walking speed of more than four leg-lengths per second, the cycle period available to coordinate all these loops is rather short. In this study we present a planar biped robot, which uses the design principle of nested loops to combine the self-stabilizing properties of its biomechanical design with several levels of neuronal control. Specifically, we show how to adapt control by including online learning mechanisms based on simulated synaptic plasticity. This robot can walk with a high speed (>3.0 leg length/s, self-adapting to minor disturbances, and reacting in a robust way to abruptly induced gait changes. At the same time, it can learn walking on different terrains, requiring only few learning experiences. This study shows that the tight coupling of physical with neuronal control, guided by sensory feedback from the walking pattern itself, combined with synaptic learning may be a way forward to better understand and solve coordination problems in other complex motor tasks.
A Guide to Electronic Multipoles in Photon Scattering and Absorption
Lovesey, Stephen William; Balcar, Ewald
2013-02-01
The practice of replacing matrix elements in atomic calculations by those of convenient operators with strong physical appeal has a long history, and in condensed matter physics it is perhaps best known through use of operator equivalents in electron resonance by Elliott and Stevens. Likewise, electronic multipoles, created with irreducible spherical-tensors, to represent charge-like and magnetic-like quantities are widespread in modern physics. Examples in recent headlines include a magnetic charge (a monopole), an anapole (a dipole) and a triakontadipole (a magnetic-like atomic multipole of rank 5). In this communication, we aim to guide the reader through use of atomic, spherical multipoles in photon scattering, and resonant Bragg diffraction and dichroic signals in particular. Applications to copper oxide CuO and neptunium dioxide (NpO2) are described. In keeping with it being a simple guide, there is sparse use in the communication of algebra and expressions are gathered from the published literature and not derived, even when central to the exposition. An exception is a thorough grounding, contained in an Appendix, for an appropriate version of the photon scattering length based on quantum electrodynamics. A theme of the guide is application of symmetry in scattering, in particular constraints imposed on results by symmetry in crystals. To this end, a second Appendix catalogues constraints on multipoles imposed by symmetry in crystal point-groups.
Concept of multipole magnetic ﬁeld rotation in ECRIS
Indian Academy of Sciences (India)
M H Rashid; R K Bhandari
2002-11-01
The conventional type of magnetic well is formed by superposition of two types of magnetic ﬁeld, axial bumpy ﬁeld and radial multipole ﬁeld. It is used to contain plasma that consists of neutrals, ions and electrons. These particles are in constant motion in the well and energetic electrons create plasma by violent collisions with neutrals and ions. The conﬁned electrons are constantly heated by ECR technique in the presence of magnetic ﬁeld. In this paper it has been shown theoretically that how the electron motion is inﬂuenced in terms of heating, containment and azimuthal uniformity of plasma, by the axial rotation of the multipole magnetic ﬁeld [1,2]. Afterwards, the feasibility of achieving a rotating magnetic multipole ﬁeld is discussed to some extent. And it is seen that it is not beyond the capability of the scientiﬁc community in the present scenario of the advanced technology. Presently, it can be achieved for lesser ﬁeld and slightly larger size of the multipole electromagnet and can be used for improvement of the ECR ion source (ECRIS).
A fast and adaptive method for complex-valued S AR image denoising based on lk norm regularization
Institute of Scientific and Technical Information of China (English)
WANG WeiWei; WANG ZhengMing; YUAN ZhenYu; LI MingShan
2009-01-01
This paper developed a fast and adaptive method for SAR complex image denoising based on lk norm regularization, as viewed from parameters estimation. We firstly establish the relationship between denoising model and ill-posed inverse problem via convex half-quadratic regularization, and compare the difference between the estimator variance obtained from the iterative formula and biased CramerRao bound, which proves the theoretic flaw of the existent methods of parameter selection. Then, the analytic expression of the model solution as the function with respect to the regularization parameter is obtained. On this basis, we study the method for selecting the regularization parameter through minimizing mean-square error of estimators and obtain the final analytic expression, which resulted in the direct calculation, high processing speed, and adaptability. Finally, the effect of regularization parameter selection on the resolution of point targets is analyzed. The experiment results of simulation and real complex-valued SAR images illustrate the validity of the proposed method.
Exchange splitting of the interaction energy and the multipole expansion of the wave function
Gniewek, Piotr
2015-01-01
The exchange splitting $J$ of the interaction energy of the hydrogen atom with a proton is calculated using the conventional surface-integral formula $J_{\\textrm{surf}}[\\varphi]$, the volume-integral formula of the symmetry-adapted perturbation theory $J_{\\textrm{SAPT}}[\\varphi]$, and a variational volume-integral formula $J_{\\textrm{var}}[\\varphi]$. The calculations are based on the multipole expansion of the wave function $\\varphi$, which is divergent for any internuclear distance $R$. Nevertheless, the resulting approximations to the leading coefficient $j_0$ in the large-$R$ asymptotic series $J(R) = 2 e^{-R-1} R ( j_0 + j_1 R^{-1} + j_2 R^{-2} +\\cdots ) $ converge, with the rate corresponding to the convergence radii equal to 4, 2, and 1 when the $J_{\\textrm{var}}[\\varphi]$, $J_{\\textrm{surf}}[\\varphi]$, and $J_{\\textrm{SAPT}}[\\varphi]$ formulas are used, respectively. Additionally, we observe that also the higher $j_k$ coefficients are predicted correctly when the multipole expansion is used in the $J_{...
Directory of Open Access Journals (Sweden)
Shengxin Wang
2016-06-01
Full Text Available Pathological tremor is an approximately rhythmic movement and considerably affects patients’ daily living activities. Biomechanical loading and functional electrical stimulation are proposed as potential alternatives for canceling the pathological tremor. However, the performance of suppression methods is associated with the separation of tremor from the recorded signals. In this literature, an algorithm incorporating a fast Fourier transform augmented with a sliding convolution window, an interpolation procedure, and a damping module of the frequency is presented to isolate tremulous components from the measured signals and estimate the instantaneous tremor frequency. Meanwhile, a mechanism platform is designed to provide the simulation tremor signals with different degrees of voluntary movements. The performance of the proposed algorithm and existing procedures is compared with simulated signals and experimental signals collected from patients. The results demonstrate that the proposed solution could detect the unknown dominant frequency and distinguish the tremor components with higher accuracy. Therefore, this algorithm is useful for actively compensating tremor by functional electrical stimulation without affecting the voluntary movement.
SPSmart: adapting population based SNP genotype databases for fast and comprehensive web access
Directory of Open Access Journals (Sweden)
Carracedo Ángel
2008-10-01
Full Text Available Abstract Background In the last five years large online resources of human variability have appeared, notably HapMap, Perlegen and the CEPH foundation. These databases of genotypes with population information act as catalogues of human diversity, and are widely used as reference sources for population genetics studies. Although many useful conclusions may be extracted by querying databases individually, the lack of flexibility for combining data from within and between each database does not allow the calculation of key population variability statistics. Results We have developed a novel tool for accessing and combining large-scale genomic databases of single nucleotide polymorphisms (SNPs in widespread use in human population genetics: SPSmart (SNPs for Population Studies. A fast pipeline creates and maintains a data mart from the most commonly accessed databases of genotypes containing population information: data is mined, summarized into the standard statistical reference indices, and stored into a relational database that currently handles as many as 4 × 109 genotypes and that can be easily extended to new database initiatives. We have also built a web interface to the data mart that allows the browsing of underlying data indexed by population and the combining of populations, allowing intuitive and straightforward comparison of population groups. All the information served is optimized for web display, and most of the computations are already pre-processed in the data mart to speed up the data browsing and any computational treatment requested. Conclusion In practice, SPSmart allows populations to be combined into user-defined groups, while multiple databases can be accessed and compared in a few simple steps from a single query. It performs the queries rapidly and gives straightforward graphical summaries of SNP population variability through visual inspection of allele frequencies outlined in standard pie-chart format. In addition, full
Fast Adaptive Thermal Camouflage Based on Flexible VO₂/Graphene/CNT Thin Films.
Xiao, Lin; Ma, He; Liu, Junku; Zhao, Wei; Jia, Yi; Zhao, Qiang; Liu, Kai; Wu, Yang; Wei, Yang; Fan, Shoushan; Jiang, Kaili
2015-12-09
Adaptive camouflage in thermal imaging, a form of cloaking technology capable of blending naturally into the surrounding environment, has been a great challenge in the past decades. Emissivity engineering for thermal camouflage is regarded as a more promising way compared to merely temperature controlling that has to dissipate a large amount of excessive heat. However, practical devices with an active modulation of emissivity have yet to be well explored. In this letter we demonstrate an active cloaking device capable of efficient thermal radiance control, which consists of a vanadium dioxide (VO2) layer, with a negative differential thermal emissivity, coated on a graphene/carbon nanotube (CNT) thin film. A slight joule heating drastically changes the emissivity of the device, achieving rapid switchable thermal camouflage with a low power consumption and excellent reliability. It is believed that this device will find wide applications not only in artificial systems for infrared camouflage or cloaking but also in energy-saving smart windows and thermo-optical modulators.
Muckley, Matthew J; Noll, Douglas C; Fessler, Jeffrey A
2015-02-01
Sparsity-promoting regularization is useful for combining compressed sensing assumptions with parallel MRI for reducing scan time while preserving image quality. Variable splitting algorithms are the current state-of-the-art algorithms for SENSE-type MR image reconstruction with sparsity-promoting regularization. These methods are very general and have been observed to work with almost any regularizer; however, the tuning of associated convergence parameters is a commonly-cited hindrance in their adoption. Conversely, majorize-minimize algorithms based on a single Lipschitz constant have been observed to be slow in shift-variant applications such as SENSE-type MR image reconstruction since the associated Lipschitz constants are loose bounds for the shift-variant behavior. This paper bridges the gap between the Lipschitz constant and the shift-variant aspects of SENSE-type MR imaging by introducing majorizing matrices in the range of the regularizer matrix. The proposed majorize-minimize methods (called BARISTA) converge faster than state-of-the-art variable splitting algorithms when combined with momentum acceleration and adaptive momentum restarting. Furthermore, the tuning parameters associated with the proposed methods are unitless convergence tolerances that are easier to choose than the constraint penalty parameters required by variable splitting algorithms.
Evidence of fast serotonin transmission in frog slowly adapting type 1 responses.
Press, Daniel; Mutlu, Sevinç; Güçlü, Burak
2010-01-01
The Merkel cell-neurite (MCN) complex generates slowly adapting type 1 (SA1) response when mechanically stimulated. Both serotonin (5-HT) and glutamate have been implicated in the generation of normal SA1 responses, but previous studies have been inconclusive as to what their roles are or how synaptic transmission occurs. In this study, excised dorsal skin patches from common water frogs (Rana ridibunda) were stimulated by von Frey hairs during perfusion in a tissue bath, and single-unit spike activity was recorded from SA1 fibres. Serotonin had no significant effect on the SA1 response at low (10 µM) concentration, significantly increased activity in a force-independent manner at 100 µM, but decreased activity with reduced responsiveness to force at 1 mM. Glutamate showed no effect on the responsiveness to force at 100 µM. MDL 72222 (100 µM), an ionotropic 5-HT3 receptor antagonist, completely abolished the responsiveness to force, suggesting that serotonin is released from Merkel cells as a result of mechanical stimulation, and activated 5-HT3 receptors on the neurite. The metabotropic 5-HT2 receptor antagonist, ketanserin, greatly reduced the SA1 fibre's responsiveness to force, as did the non-specific glutamate receptor antagonist, kynurenic acid. This supports a role for serotonin and glutamate as neuromodulators in the MCN complex, possibly by activation and/or inhibition of signalling cascades in the Merkel cell associated with vesicle release. Additionally, it was observed that SA1 responses contained a force-independent component, similar to a dynamic response observed during mechanical vibrations.
Real-time MRI-guided hyperthermia treatment using a fast adaptive algorithm.
Stakhursky, Vadim L; Arabe, Omar; Cheng, Kung-Shan; Macfall, James; Maccarini, Paolo; Craciunescu, Oana; Dewhirst, Mark; Stauffer, Paul; Das, Shiva K
2009-04-01
ratio of integral temperature in the tumor to integral temperature in normal tissue) by up to six-fold, compared to the first iteration. The integrated MR-HT treatment algorithm successfully steered the focus of heating into the desired target volume for both the simple homogeneous and the more challenging muscle equivalent phantom with tumor insert models of human extremity sarcomas after 16 and 2 iterations, correspondingly. The adaptive method for MR thermal image guided focal steering shows promise when tested in phantom experiments on a four-antenna phased array applicator.
Real-time MRI-guided hyperthermia treatment using a fast adaptive algorithm
Stakhursky, Vadim L.; Arabe, Omar; Cheng, Kung-Shan; MacFall, James; Maccarini, Paolo; Craciunescu, Oana; Dewhirst, Mark; Stauffer, Paul; Das, Shiva K.
2009-04-01
temperature in the tumor to integral temperature in normal tissue) by up to six-fold, compared to the first iteration. The integrated MR-HT treatment algorithm successfully steered the focus of heating into the desired target volume for both the simple homogeneous and the more challenging muscle equivalent phantom with tumor insert models of human extremity sarcomas after 16 and 2 iterations, correspondingly. The adaptive method for MR thermal image guided focal steering shows promise when tested in phantom experiments on a four-antenna phased array applicator.
De Angelis, Francesco; Cimini, Domenico; Hocking, James; Martinet, Pauline; Kneifel, Stefan
2016-08-01
Ground-based microwave radiometers (MWRs) offer a new capability to provide continuous observations of the atmospheric thermodynamic state in the planetary boundary layer. Thus, they are potential candidates to supplement radiosonde network and satellite data to improve numerical weather prediction (NWP) models through a variational assimilation of their data. However in order to assimilate MWR observations, a fast radiative transfer model is required and such a model is not currently available. This is necessary for going from the model state vector space to the observation space at every observation point. The fast radiative transfer model RTTOV is well accepted in the NWP community, though it was developed to simulate satellite observations only. In this work, the RTTOV code has been modified to allow for simulations of ground-based upward-looking microwave sensors. In addition, the tangent linear, adjoint, and K-modules of RTTOV have been adapted to provide Jacobians (i.e., the sensitivity of observations to the atmospheric thermodynamical state) for ground-based geometry. These modules are necessary for the fast minimization of the cost function in a variational assimilation scheme. The proposed ground-based version of RTTOV, called RTTOV-gb, has been validated against accurate and less time-efficient line-by-line radiative transfer models. In the frequency range commonly used for temperature and humidity profiling (22-60 GHz), root-mean-square brightness temperature differences are smaller than typical MWR uncertainties (˜ 0.5 K) at all channels used in this analysis. Brightness temperatures (TBs) computed with RTTOV-gb from radiosonde profiles have been compared with nearly simultaneous and co-located ground-based MWR observations. Differences between simulated and measured TBs are below 0.5 K for all channels except for the water vapor band, where most of the uncertainty comes from instrumental errors. The Jacobians calculated with the K-module of RTTOV
Directory of Open Access Journals (Sweden)
Loreen eHertäg
2012-09-01
Full Text Available For large-scale network simulations, it is often desirable to have computationally tractable, yet in a defined sense still physiologically valid neuron models. In particular, these models should be able to reproduce physiological measurements, ideally in a predictive sense, and under different input regimes in which neurons may operate in vivo. Here we present an approach to parameter estimation for a simple spiking neuron model mainly based on standard f-I curves obtained from in vitro recordings. Such recordings are routinely obtained in standard protocols and assess a neuron's response under a wide range of mean input currents. Our fitting procedure makes use of closed-form expressions for the firing rate derived from an approximation to the adaptive exponential integrate-and-fire (AdEx model. The resulting fitting process is simple and about two orders of magnitude faster compared to methods based on numerical integration of the differential equations. We probe this method on different cell types recorded from rodent prefrontal cortex. After fitting to the f-I current-clamp data, the model cells are tested on completely different sets of recordings obtained by fluctuating ('in-vivo-like' input currents. For a wide range of different input regimes, cell types, and cortical layers, the model could predict spike times on these test traces quite accurately within the bounds of physiological reliability, although no information from these distinct test sets was used for model fitting. Further analyses delineated some of the empirical factors constraining model fitting and the model's generalization performance. An even simpler adaptive LIF neuron was also examined in this context. Hence, we have developed a 'high-throughput' model fitting procedure which is simple and fast, with good prediction performance, and which relies only on firing rate information and standard physiological data widely and easily available.
Ghalambor, Cameron K; Reznick, David N; Walker, Jeffrey A
2004-07-01
The empirical study of natural selection reveals that adaptations often involve trade-offs between competing functions. Because natural selection acts on whole organisms rather than isolated traits, adaptive evolution may be constrained by the interaction between traits that are functionally integrated. Yet, few attempts have been made to characterize how and when such constraints are manifested or whether they limit the adaptive divergence of populations. Here we examine the consequences of adaptive life-history evolution on locomotor performance in the live-bearing guppy. In response to increased predation from piscivorous fish, Trinidadian guppies evolve an increased allocation of resources toward reproduction. These populations are also under strong selection for rapid fast-start swimming performance to evade predators. Because embryo development increases a female's wet mass as she approaches parturition, an increased investment in reproductive allocation should impede fast-start performance. We find evidence for adaptive but constrained evolution of fast-start swimming performance in laboratory trials conducted on second-generation lab-reared fish. Female guppies from high-predation localities attain a faster acceleration and velocity and travel a greater distance during fast-start swimming trials. However, velocity and distance traveled decline more rapidly over the course of pregnancy in these same females, thus reducing the magnitude of divergence in swimming performance between high- and low-predation populations. This functional trade-off between reproduction and swimming performance reveals how different aspects of the phenotype are integrated and highlights the complexity of adaptation at the whole-organism level.
Li, Zhong-xiao; Li, Zhen-chun
2017-08-01
Adaptive multiple subtraction is an important step for successfully conducting surface-related multiple elimination in marine seismic exploration. 2D adaptive multiple subtraction conducted in the parabolic Radon domain has been proposed to better separate primaries and multiples than 2D adaptive multiple subtraction conducted in the time-offset domain. Additionally, the parabolic Radon domain hybrid demultiple method combining parabolic Radon filtering and parabolic Radon domain 2D adaptive multiple subtraction can better remove multiples than the cascaded demultiple method using time-offset domain 2D adaptive multiple subtraction and the parabolic Radon transform method sequentially. To solve the matching filter in the optimization problem with L1 norm minimization constraint of primaries, traditional parabolic Radon domain 2D adaptive multiple subtraction uses the iterative reweighted least squares (IRLS) algorithm, which is computationally expensive for solving a weighted LS inversion in each iteration. In this paper we introduce the fast iterative shrinkage thresholding algorithm (FISTA) as a faster alternative to the IRLS algorithm for parabolic Radon domain 2D adaptive multiple subtraction. FISTA uses the shrinkage-thresholding operator to promote the sparsity of estimated primaries and solves the 2D matching filter with iterative steps. FISTA based parabolic Radon domain 2D adaptive multiple subtraction reduces the computation time effectively while achieving similar accuracy compared with IRLS based parabolic Radon domain 2D adaptive multiple subtraction. Additionally, the provided examples show that FISTA based parabolic Radon domain 2D adaptive multiple subtraction can better separate primaries and multiples than FISTA based time-offset domain 2D adaptive multiple subtraction. Furthermore, we introduce FISTA based parabolic Radon domain 2D adaptive multiple subtraction into the parabolic Radon domain hybrid demultiple method to improve its computation
Mildren, Robyn L; Bent, Leah R
2016-04-15
It has previously been shown that cutaneous sensory input from across a broad region of skin can influence proprioception at joints of the hand. The present experiment tested whether cutaneous input from different skin regions across the foot can influence proprioception at the ankle joint. The ability to passively match ankle joint position (17° and 7° plantar flexion and 7° dorsiflexion) was measured while cutaneous vibration was applied to the sole (heel, distal metatarsals) or dorsum of the target foot. Vibration was applied at two different frequencies to preferentially activate Meissner's corpuscles (45 Hz, 80 μm) or Pacinian corpuscles (255 Hz, 10 μm) at amplitudes ∼3 dB above mean perceptual thresholds. Results indicated that cutaneous input from all skin regions across the foot could influence joint-matching error and variability, although the strongest effects were observed with heel vibration. Furthermore, the influence of cutaneous input from each region was modulated by joint angle; in general, vibration had a limited effect on matching in dorsiflexion compared with matching in plantar flexion. Unlike previous results in the upper limb, we found no evidence that Pacinian input exerted a stronger influence on proprioception compared with Meissner input. Findings from this study suggest that fast-adapting cutaneous input from the foot modulates proprioception at the ankle joint in a passive joint-matching task. These results indicate that there is interplay between tactile and proprioceptive signals originating from the foot and ankle.
Optical theorem for multipole sources in wave diffraction theory
Eremin, Yu. A.; Sveshnikov, A. G.
2016-05-01
The optical theorem is generalized to the case of local body excitation by multipole sources. It is found that, to calculate the extinction cross section, it is sufficient to calculate the scattered field derivatives at a single point. It is shown that the Purcell factor, which is a rather important parameter, can be represented in analytic form. The result is generalized to the case of a local scatterer incorporated in a homogeneous halfspace.
Extension of the Multipole Approach to Random Metamaterials
Directory of Open Access Journals (Sweden)
A. Chipouline
2012-01-01
Full Text Available Influence of the short-range lateral disorder in the meta-atoms positioning on the effective parameters of the metamaterials is investigated theoretically using the multipole approach. Random variation of the near field quasi-static interaction between metaatoms in form of double wires is shown to be the reason for the effective permittivity and permeability changes. The obtained analytical results are compared with the known experimental ones.
Prediction of conformationally dependent atomic multipole moments in carbohydrates.
Cardamone, Salvatore; Popelier, Paul L A
2015-12-15
The conformational flexibility of carbohydrates is challenging within the field of computational chemistry. This flexibility causes the electron density to change, which leads to fluctuating atomic multipole moments. Quantum Chemical Topology (QCT) allows for the partitioning of an "atom in a molecule," thus localizing electron density to finite atomic domains, which permits the unambiguous evaluation of atomic multipole moments. By selecting an ensemble of physically realistic conformers of a chemical system, one evaluates the various multipole moments at defined points in configuration space. The subsequent implementation of the machine learning method kriging delivers the evaluation of an analytical function, which smoothly interpolates between these points. This allows for the prediction of atomic multipole moments at new points in conformational space, not trained for but within prediction range. In this work, we demonstrate that the carbohydrates erythrose and threose are amenable to the above methodology. We investigate how kriging models respond when the training ensemble incorporating multiple energy minima and their environment in conformational space. Additionally, we evaluate the gains in predictive capacity of our models as the size of the training ensemble increases. We believe this approach to be entirely novel within the field of carbohydrates. For a modest training set size of 600, more than 90% of the external test configurations have an error in the total (predicted) electrostatic energy (relative to ab initio) of maximum 1 kJ mol(-1) for open chains and just over 90% an error of maximum 4 kJ mol(-1) for rings. © 2015 Wiley Periodicals, Inc.
Development of a multi-pole magnetorheological brake
Shiao, Yaojung; Nguyen, Quang-Anh
2013-06-01
This paper presents a new approach in the design and optimization of a novel multi-pole magnetorheological (MR) brake that employs magnetic flux more effectively on the surface of the rotor. MR brakes with conventional single ring-type electromagnetic poles have reached the limits of torque enhancement. One major reason is the limitation of the magnetic field strength within the active area of the MR fluid due to the geometric constraints of the coil. The multi-pole MR brake design features multiple electromagnetic poles surrounded by several coils. As a result, the active chaining areas for the MR fluid are greatly increased, and significant brake torque improvement is achieved. The coil structure, as a part of the stator, becomes flexible and customizable in terms of space usage for the winding and bobbin design. In addition, this brake offers extra options in its dimensions for torque enhancement because either the radial or the axial dimensions of the rotor can be increased. Magnetic circuit analysis was conducted to analyze the effects of the design parameters on the field torque. After that, simulations were done to find the optimal design under all major geometric constraints with a given power supply. The results show that the multi-pole MR brake provides a considerable braking torque increase while maintaining a compact and solid design. This is confirmation of its feasibility in actual braking applications.
Cluster-Based Multipolling Sequencing Algorithm for Collecting RFID Data in Wireless LANs
Choi, Woo-Yong; Chatterjee, Mainak
2015-03-01
With the growing use of RFID (Radio Frequency Identification), it is becoming important to devise ways to read RFID tags in real time. Access points (APs) of IEEE 802.11-based wireless Local Area Networks (LANs) are being integrated with RFID networks that can efficiently collect real-time RFID data. Several schemes, such as multipolling methods based on the dynamic search algorithm and random sequencing, have been proposed. However, as the number of RFID readers associated with an AP increases, it becomes difficult for the dynamic search algorithm to derive the multipolling sequence in real time. Though multipolling methods can eliminate the polling overhead, we still need to enhance the performance of the multipolling methods based on random sequencing. To that extent, we propose a real-time cluster-based multipolling sequencing algorithm that drastically eliminates more than 90% of the polling overhead, particularly so when the dynamic search algorithm fails to derive the multipolling sequence in real time.
HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections.
Cornilescu, Gabriel; Bahrami, Arash; Tonelli, Marco; Markley, John L; Eghbalnia, Hamid R
2007-08-01
We describe a novel method for the robust, rapid, and reliable determination of J couplings in multi-dimensional NMR coupling data, including small couplings from larger proteins. The method, "High-resolution Iterative Frequency Identification of Couplings" (HIFI-C) is an extension of the adaptive and intelligent data collection approach introduced earlier in HIFI-NMR. HIFI-C collects one or more optimally tilted two-dimensional (2D) planes of a 3D experiment, identifies peaks, and determines couplings with high resolution and precision. The HIFI-C approach, demonstrated here for the 3D quantitative J method, offers vital features that advance the goal of rapid and robust collection of NMR coupling data. (1) Tilted plane residual dipolar couplings (RDC) data are collected adaptively in order to offer an intelligent trade off between data collection time and accuracy. (2) Data from independent planes can provide a statistical measure of reliability for each measured coupling. (3) Fast data collection enables measurements in cases where sample stability is a limiting factor (for example in the presence of an orienting medium required for residual dipolar coupling measurements). (4) For samples that are stable, or in experiments involving relatively stronger couplings, robust data collection enables more reliable determinations of couplings in shorter time, particularly for larger biomolecules. As a proof of principle, we have applied the HIFI-C approach to the 3D quantitative J experiment to determine N-C' RDC values for three proteins ranging from 56 to 159 residues (including a homodimer with 111 residues in each subunit). A number of factors influence the robustness and speed of data collection. These factors include the size of the protein, the experimental set up, and the coupling being measured, among others. To exhibit a lower bound on robustness and the potential for time saving, the measurement of dipolar couplings for the N-C' vector represents a realistic
Energy Technology Data Exchange (ETDEWEB)
Gupta, V; Wang, Y; Romero, A; Heijmen, B; Hoogeman, M [Erasmus MC Cancer Institute, Rotterdam (Netherlands); Myronenko, A; Jordan, P [Accuray Incorporated, Sunnyvale, United States. (United States)
2014-06-01
Purpose: Various studies have demonstrated that online adaptive radiotherapy by real-time re-optimization of the treatment plan can improve organs-at-risk (OARs) sparing in the abdominal region. Its clinical implementation, however, requires fast and accurate auto-segmentation of OARs in CT scans acquired just before each treatment fraction. Autosegmentation is particularly challenging in the abdominal region due to the frequently observed large deformations. We present a clinical validation of a new auto-segmentation method that uses fully automated non-rigid registration for propagating abdominal OAR contours from planning to daily treatment CT scans. Methods: OARs were manually contoured by an expert panel to obtain ground truth contours for repeat CT scans (3 per patient) of 10 patients. For the non-rigid alignment, we used a new non-rigid registration method that estimates the deformation field by optimizing local normalized correlation coefficient with smoothness regularization. This field was used to propagate planning contours to repeat CTs. To quantify the performance of the auto-segmentation, we compared the propagated and ground truth contours using two widely used metrics- Dice coefficient (Dc) and Hausdorff distance (Hd). The proposed method was benchmarked against translation and rigid alignment based auto-segmentation. Results: For all organs, the auto-segmentation performed better than the baseline (translation) with an average processing time of 15 s per fraction CT. The overall improvements ranged from 2% (heart) to 32% (pancreas) in Dc, and 27% (heart) to 62% (spinal cord) in Hd. For liver, kidneys, gall bladder, stomach, spinal cord and heart, Dc above 0.85 was achieved. Duodenum and pancreas were the most challenging organs with both showing relatively larger spreads and medians of 0.79 and 2.1 mm for Dc and Hd, respectively. Conclusion: Based on the achieved accuracy and computational time we conclude that the investigated auto
Multipole interference in the second-harmonic optical radiation from gold nanoparticles.
Kujala, Sami; Canfield, Brian K; Kauranen, Martti; Svirko, Yuri; Turunen, Jari
2007-04-20
We provide experimental evidence of higher multipole (magnetic dipole and electric quadrupole) radiation in second-harmonic (SH) generation from arrays of metal nanoparticles. Fundamental differences in the radiative properties of electric dipoles and higher multipoles yield opposite interference effects observed in the SH intensities measured in the reflected and transmitted directions. These interference effects clearly depend on the polarization of the fundamental field, directly indicating the importance of multipole effects in the nonlinear response. We estimate that higher multipoles contribute up to 20% of the total emitted SH field amplitude for certain polarization configurations.
Investigation of Multipole Electrostatics in Hydration Free Energy Calculations
Shi, Yue; Wu, Chuanjie; Ponder, Jay W.; Ren, Pengyu
2010-01-01
Hydration free energy (HFE) is generally used for evaluating molecular solubility, which is an important property for pharmaceutical and chemical engineering processes. Accurately predicting HFE is also recognized as one fundamental capability of molecular mechanics force field. Here we present a systematic investigation on HFE calculations with AMOEBA polarizable force field at various parameterization and simulation conditions. The HFEs of seven small organic molecules have been obtained alchemically using the Bennett Acceptance Ratio (BAR) method. We have compared two approaches to derive the atomic multipoles from quantum mechanical (QM) calculations: one directly from the new distributed multipole analysis (DMA) and the other involving fitting to the electrostatic potential around the molecules. Wave functions solved at the MP2 level with four basis sets (6-311G*, 6-311++G(2d,2p), cc-pVTZ, and aug-cc-pVTZ) are used to derive the atomic multipoles. HFEs from all four basis sets show a reasonable agreement with experimental data (root mean square error 0.63 kcal/mol for aug-ccpVTZ). We conclude that aug-cc-pVTZ gives the best performance when used with AMOEBA, and 6-311++G(2d,2p) is comparable but more efficient for larger systems. The results suggest that the inclusion of diffuse basis functions is important for capturing intermolecular interactions. The effect of long-range correction to van der Waals interaction on the hydration free energies is about 0.1 kcal/mol when the cutoff is 12Å, and increases linearly with the number of atoms in the solute/ligand. In addition, we also discussed the results from a hybrid approach that combines polarizable solute with fixed-charge water in the hydration free energy calculation. PMID:20925089
Multipole expansions in the representation of current sources.
Trontelj, Z; Jazbinsek, V; Erné, S N; Trahms, L
1991-01-01
After obtaining the measured magnetic field or its components in the form of an isofield map one has to decide which approximation to use in solving the inverse problem. A single current dipole as an equivalent current source is often used. It will be shown when this approximation fails and one possible way to improve the equivalent source description. The expansion of current multipoles is discussed up to the second order. The localization of an equivalent current source in this case is considered. The application of this type of expansion is analysed and discussed.
Experimental demonstration of a surface-electrode multipole ion trap
Maurice, Mark; Green, Dylan; Farr, Andrew; Burke, Timothy; Hilleke, Russell; Clark, Robert
2015-01-01
We report on the design and experimental characterization of a surface-electrode multipole ion trap. Individual microscopic sugar particles are confined in the trap. The trajectories of driven particle motion are compared with a theoretical model, both to verify qualitative predictions of the model, and to measure the charge-to-mass ratio of the confined particle. The generation of harmonics of the driving frequency is observed as a key signature of the nonlinear nature of the trap. We remark on possible applications of our traps, including to mass spectrometry.
Analytical expressions for fringe fields in multipole magnets
Directory of Open Access Journals (Sweden)
B. D. Muratori
2015-06-01
Full Text Available Fringe fields in multipole magnets can have a variety of effects on the linear and nonlinear dynamics of particles moving along an accelerator beam line. An accurate model of an accelerator must include realistic models of the magnet fringe fields. Fringe fields for dipoles are well understood and can be modeled at an early stage of accelerator design in such codes as mad8, madx, gpt or elegant. Existing techniques for quadrupole and higher order multipoles rely either on the use of a numerical field map, or on a description of the field in the form of a series expansion about a chosen axis. Usually, it is not until the later stages of a design project that such descriptions (based on magnet modeling or measurement become available. Furthermore, series expansions rely on the assumption that the beam travels more or less on axis throughout the beam line; but in some types of machines (for example, Fixed Field Alternating Gradients or FFAGs this is not a good assumption. Furthermore, some tracking codes, such as gpt, use methods for including space charge effects that require fields to vary smoothly and continuously along a beam line: in such cases, realistic fringe field models are of significant importance. In this paper, a method for constructing analytical expressions for multipole fringe fields is presented. Such expressions allow fringe field effects to be included in beam dynamics simulations from the start of an accelerator design project, even before detailed magnet design work has been undertaken. The magnetostatic Maxwell equations are solved analytically and a solution that fits all orders of multipoles is derived. Quadrupole fringe fields are considered in detail as these are the ones that give the strongest effects. The analytic expressions for quadrupole fringe fields are compared with data obtained from numerical modeling codes in two cases: a magnet in the high luminosity upgrade of the Large Hadron Collider inner triplet, and a
Deriving static atomic multipoles from the electrostatic potential.
Kramer, Christian; Bereau, Tristan; Spinn, Alexander; Liedl, Klaus R; Gedeck, Peter; Meuwly, Markus
2013-12-23
The description of molecular systems using multipolar electrostatics calls for automated methods to fit the necessary parameters. In this paper, we describe an open-source software package that allows fitting atomic multipoles (MTPs) from the ab initio electrostatic potential by adequate atom typing and judicious assignment of the local axis system. By enabling the simultaneous fit of several molecules and/or conformations, the package addresses issues of parameter transferability and lack of sampling for buried atoms. We illustrate the method by studying a series of small alcohol molecules, as well as various conformations of protonated butylamine.
Multipole shimming of permanent magnets using harmonic corrector rings.
Jachmann, R C; Trease, D R; Bouchard, L-S; Sakellariou, D; Martin, R W; Schlueter, R D; Budinger, T F; Pines, A
2007-03-01
Shimming systems are required to provide sufficient field homogeneity for high resolution nuclear magnetic resonance (NMR). In certain specialized applications, such as rotating-field NMR and mobile ex situ NMR, permanent magnet-based shimming systems can provide considerable advantages. We present a simple two-dimensional shimming method based on harmonic corrector rings which can provide arbitrary multipole order shimming corrections. Results demonstrate, for example, that quadrupolar order shimming improves the linewidth by up to an order of magnitude. An additional order of magnitude reduction is in principle achievable by utilizing this shimming method for z-gradient correction and higher order xy gradients.
New Multipole Method for 3-D Capacitance Extraction
Institute of Scientific and Technical Information of China (English)
Zhao-Zhi Yang; Ze-Yi Wang
2004-01-01
This paper describes an effcient improvement of the multipole accelerated boundary element method for 3-D capacitance extraction.The overall relations between the positions of 2-D boundary elements are considered instead of only the relations between the center-points of the elements,and a new method of cube partitioning is introduced.Numerical results are presented to demonstrate that the method is accurate and has nearly linear computational growth as O(n),where n is the number of panels/boundary elements.The proposed method is more accurate and much faster than Fastcap.
Multipole Expansions of Aggregate Charge: How Far to Go?
Matthews, Lorin S; Hyde, Truell W
2015-01-01
Aggregates immersed in a plasma or radiative environment will have charge distributed over their extended surface. Previous studies have modeled the aggregate charge using the monopole and dipole terms of a multipole expansion, with results indicating that the dipole-dipole interactions play an important role in increasing the aggregation rate and altering the morphology of the resultant aggregates. This study examines the effect that including the quadrupole terms has on the dynamics of aggregates interacting with each other and the confining electric fields in laboratory experiments. Results are compared to modeling aggregates as a collection of point charges located at the center of each spherical monomer comprising the aggregate.
Multipole approach for photo- and electroproduction of kaon
Mart, T
2007-01-01
We have analyzed the experimental data on K+Lambda photoproduction by using a multipole approach. In this analysis we use the background amplitudes constructed from appropriate Feynman diagrams in a gauge-invariant and crossing-symmetric fashion. Results of our analysis reveal the problem of mutual consistency between the new SAPHIR and CLAS data. We found that the problem could lead to different conclusions on ``missing resonances''. We have also extended our analysis to the finite Q^2 region and compared the result with the corresponding electroproduction data.
Martinez, Bridget; Soñanez-Organis, José G; Vázquez-Medina, José Pablo; Viscarra, Jose A; MacKenzie, Duncan S; Crocker, Daniel E; Ortiz, Rudy M
2013-12-15
Food deprivation in mammals is typically associated with reduced thyroid hormone (TH) concentrations and deiodinase content and activity to suppress metabolism. However, in prolonged-fasted, metabolically active elephant seal pups, TH levels are maintained, if not elevated. The functional relevance of this apparent paradox is unknown and demonstrates variability in the regulation of TH levels, metabolism and function in food-deprived mammals. To address our hypothesis that cellular TH-mediated activity is upregulated with fasting duration, we quantified the mRNA expression and protein content of adipose and muscle deiodinase type I (DI1) and type II (DI2), and TH receptor beta-1 (THrβ-1) after 1, 3 and 7 weeks of fasting in northern elephant seal pups (N=5-7 per week). Fasting did not decrease the concentrations of plasma thyroid stimulating hormone, total triiodothyronine (tT3), free T3, total thyroxine (tT4) or free T4, suggesting that the hypothalamic-pituitary-thyroid axis is not suppressed, but rather maintained during fasting. Mean mRNA expression of adipose DI1 and DI2 increased threefold and fourfold, respectively, and 20- and 30-fold, respectively, in muscle. With the exception of adipose DI1, protein expression of adipose DI2 and muscle DI1 and DI2 increased twofold to fourfold. Fasting also increased adipose (fivefold) and muscle (fourfold) THrβ-1 mRNA expression, suggesting that the mechanisms mediating cellular TH activity are upregulated with prolonged fasting. The data demonstrate a unique, atypical mechanism of TH activity and regulation in mammals adapted to prolonged food deprivation in which the potential responsiveness of peripheral tissues and cellular TH activity are increased, which may contribute to their lipid-based metabolism.
Kinnunen, Sanni; Mänttäri, Satu; Herzig, Karl-Heinz; Nieminen, Petteri; Mustonen, Anne-Mari; Saarela, Seppo
2016-02-01
The raccoon dog (Nyctereutes procyonoides) is a canid with autumnal fattening and passive wintering strategy. We examined the effects of wintertime fasting and seasonality on AMP-activated protein kinase (AMPK), a regulator of metabolism, and its target, acetyl-CoA carboxylase (ACC) on the species. Twelve farmed raccoon dogs (eleven females/one male) were divided into two groups: half were fasted for ten weeks in December-March (winter fasted) and the others were fed ad libitum (winter fed). A third group (autumn fed, eight females) was fed ad libitum and sampled in December. Total AMPK, ACC and their phosphorylated forms (pAMPK, pACC) were measured from hypothalamus, liver, intra-abdominal (iWAT) and subcutaneous white adipose tissues (sWAT). The fasted animals lost 32% and the fed 20% of their body mass. Hypothalamic AMPK expression was lower and pACC levels higher in the winter groups compared to the autumn fed group. Liver pAMPK was lower in the winter fasted group, with consistently decreased ACC and pACC. AMPK and pAMPK were down-regulated in sWAT and iWAT of both winter groups, with a parallel decline in pACC in sWAT. The responses of AMPK and ACC to fasting were dissimilar to the effects observed previously in non-seasonal mammals and hibernators. Differences between the winter fed and autumn fed groups indicate that the functions of AMPK and ACC could be regulated in a season-dependent manner. Furthermore, the distinctive effects of prolonged fasting and seasonal adaptation on AMPK-ACC pathway could contribute to the wintering strategy of the raccoon dog.
Higher Electric Multipole Moments for Some Polyatomic Molecules from Accurate SCF Calculations
Institute of Scientific and Technical Information of China (English)
Telhat Ozdogan
2002-01-01
Higher electric multipole moments for the ground-state electronic configuration of some polyatomicmolecules, i.e. CH4, NH3, H2O, were calculated from SCF-HFR wavefunctions using Slater-type orbital basis sets.The calculated results for electric multipole moments of these molecules are in good agreement with the theoretical andexperimental ones.
The gravitational time delay in the field of a slowly moving body with arbitrary multipoles
Energy Technology Data Exchange (ETDEWEB)
Soffel, Michael H., E-mail: michael.soffel@tu-dresden.de [Shanghai Astronomical Observatory, 80 Nandan Road, Shanghai, 200030 (China); Lohmann Observatory, Helmholtzstrasse 10, D-01062 Dresden (Germany); Han, Wen-Biao, E-mail: wbhan@shao.ac.cn [Shanghai Astronomical Observatory, 80 Nandan Road, Shanghai, 200030 (China)
2015-02-06
We calculate the time delay of light in the gravitational field of a slowly moving body with arbitrary multipoles (mass and spin multipole moments) by the Time-Transfer-Function (TTF) formalism. The parameters we use, first introduced by Kopeikin for a gravitational source at rest, make the integration of the TTF very elegant and simple. Results completely coincide with expressions from the literature. The results for a moving body (with constant velocity) with complete multipole-structure are new, according to our knowledge. - Highlights: • The Time-Transfer-Function (TTF) is used to calculate the gravitational time delay. • The time delay for a body with arbitrary multipoles at rest is calculated in a very simply manner. • The gravitational time delay induced by a slowly moving body with arbitrary multipoles is derived for the first time.
Optimal design of a new multipole bilayer magnetorheological brake
Shiao, Yaojung; Ngoc, Nguyen Anh; Lai, Chien-Hung
2016-11-01
This article presents a new high-torque multipole bilayer magneto-rheological brake (MRB). This MRB has a unique structural design with multiple electromagnetic poles and multiple media layers of magnetorheological fluid (MRF). The MRB has two rotors located on the outer and inner sides of a six-pole stator, and therefore, it can provide higher torque and a larger torque-to-volume ratio (TVR) than conventional single- or multipole single-layer MRBs can. Moreover, the problem of potential MRF leakage is solved by using cylindrical separator rings around the stator. In this study, first, the structure of the proposed MRB is introduced. An analog magnetic circuit was built for the MRB to investigate the effects of the MRB parameters on the magnetic field intensity of the MRF layers. In addition, a 3D electromagnetic model of the MRB was developed to simulate and examine the magnetic flux intensity and corresponding braking torque. An approximate optimization method was then applied to obtain the optimal geometric dimensions for the major dimensional parameters of the MRB. The MRB was manufactured and tested to validate its torque and dynamic characteristics. The results showed that the proposed MRB exhibited great enhancement of the braking torque and TVR.
Alleviating the tension at low multipole through Axion Monodromy
Meerburg, P Daniel
2014-01-01
There exists some tension on large scales between the Planck data and the LCDM concordance model of the Universe, which has been amplified by the recently claimed discovery of non-zero tensor to scalar ratio $r$. At the same time, the current best-fit value of $r$ suggests large field inflation delta phi>M_p, which requires a UV complete description of inflation. A very promising working example that predicts large tensor modes and can be UV completed is axion monodromy inflation. This realization of inflation naturally produces oscillating features, as consequence of a broken shift symmetry. We analyse a combination of Planck, ACT, SPT, WMAP low l polarization and BICEP2 data, and show a long wavelength feature from a periodic potential can alleviate the tension at low multipoles with an improvement delta chi^2 ~2.5-4 per degree of freedom, depending on the level of foreground subtraction. As with an introduction of running, one expects that any scale dependence should lead to a worsened fit at high multipol...
A Multipole Expansion Method for Analyzing Lightning Field Changes
Koshak, William J.; Krider, E. Philip; Murphy, Martin J.
1999-01-01
Changes in the surface electric field are frequently used to infer the locations and magnitudes of lightning-caused changes in thundercloud charge distributions. The traditional procedure is to assume that the charges that are effectively deposited by the flash can be modeled either as a single point charge (the Q model) or a point dipole (the P model). The Q model has four unknown parameters and provides a good description of many cloud-to-ground (CG) flashes. The P model has six unknown parameters and describes many intracloud (IC) discharges. In this paper we introduce a new analysis method that assumes that the change in the cloud charge can be described by a truncated multipole expansion, i.e., there are both monopole and dipole terms in the unknown source distribution, and both terms are applied simultaneously. This method can be used to analyze CG flashes that are accompanied by large changes in the cloud dipole moment and complex IC discharges. If there is enough information content in the measurements, the model can also be generalized to include quadrupole and higher order terms. The parameters of the charge moments are determined using a dme-dimensional grid search in combination with a linear inversion, and because of this, local minima in the error function and the associated solution ambiguities are avoided. The multipole method has been tested on computer-simulated sources and on natural lightning at the NASA Kennedy Space Center and U.S. Air Force Eastern Range.
On the Fly Doppler Broadening Using Multipole Representation
Energy Technology Data Exchange (ETDEWEB)
Khassenov, Azamat; Choi, Sooyoung; Lee, Deokjung [Ulsan National Institute of Science and Technology, Ulsan (Korea, Republic of)
2015-05-15
On the Fly Doppler broadening is the technique to avoid pre-generation of the microscopic cross section, in other words, reduce the amount of storage. Currently, there are different types of formalisms used by NJOY code to generate reaction cross section and accomplish its Doppler broadening. Single-Level Breit-Wigner (SLBW) formalism is limited to well-separated resonances, in other words, it does not consider interference between energy levels. Multi-Level Breit- Wigner formalism (MLBW) was tested as the candidate for the cross section generation in the Monte Carlo code, which is under development in UNIST. According to the results, MLBW method requires huge amount of computational time to produce cross section at certain energy point. Reich-Moore (RM) technique can generate only 0K cross section, which means that it cannot produce broaden cross section directly from resonance parameters. The first step was to convert resonance parameters given in nuclear data file into multipoles. MPR shows very high potential to be used as the formalism in the on-the-fly Doppler broadening module of MCS. One of the main reasons is that comparison of the time cost shown in Table IV supports application of multipole representation.
Chow, Brian Y.; Chuong, Amy S; Klapoetke, Nathan C.; Edward S Boyden
2011-01-01
The life and operation of cells involve many physiological processes that take place over fast timescales of milliseconds to minutes. Genetically-encoded technologies for driving or suppressing specific fast physiological processes in intact cells, perhaps embedded within intact tissues in living organisms, are critical for the ability to understand how these physiological processes contribute to emergent cellular and organismal functions and behaviors. Such “synthetic physiology” tools are o...
Mustonen, A-M; Nieminen, P; Puukka, M; Asikainen, J; Saarela, S; Karonen, S-L; Kukkonen, J V K; Hyvärinen, H
2004-01-01
The raccoon dog (Nyctereutes procyonoides) is a middle-sized canid with profound autumnal fattening followed by winter sleep. This study investigated the effects of prolonged fasting-induced winter sleep on the fat and nitrogen metabolism of the species. Half of the animals were treated with continuous-release melatonin implants to induce artificial short photoperiod. Autumnal accumulation of fat was characterized by low plasma free fatty acid (FFA), diacylglycerol (DG), and triacylglycerol (TG) levels. After transition to winter catabolism, the circulating lipid levels increased due to enhanced lipolysis. Two months of fasting resulted in a steady 3.1 kg weight loss (28% of body mass, 0.47% day(-1)). Storage fat was mobilized during the winter sleep reflected by the elevated FFA and DG concentrations. The lowered insulin levels could be a stimulator for TG hydrolysis. The plasma total amino acid concentrations, urea levels, and urea-creatinine ratios decreased due to fasting, whereas ammonia and total protein concentrations remained stable. The effects of melatonin on energy metabolism were modest. The results indicate that the raccoon dog is well adapted to long-term wintertime fasting utilizing fat as the principal metabolic fuel. The species can maintain its protein catabolism constant for at least 60 days. Decreased cortisol and thyroid hormone concentrations may contribute to protein sparing.
Valdivia, Valeska
2014-01-01
Context. Ultraviolet radiation plays a crucial role in molecular clouds. Radiation and matter are tightly coupled and their interplay influences the physical and chemical properties of gas. In particular, modeling the radiation propagation requires calculating column densities, which can be numerically expensive in high-resolution multidimensional simulations. Aims. Developing fast methods for estimating column densities is mandatory if we are interested in the dynamical influence of the radiative transfer. In particular, we focus on the effect of the UV screening on the dynamics and on the statistical properties of molecular clouds. Methods. We have developed a tree-based method for a fast estimate of column densities, implemented in the adaptive mesh refinement code RAMSES. We performed numerical simulations using this method in order to analyze the influence of the screening on the clump formation. Results. We find that the accuracy for the extinction of the tree-based method is better than 10%, while the ...
Ki, Dae Wook; Kim, Jae Ho
2013-07-01
We propose a fast new multiple run_before decoding method in context-adaptive variable length coding (CAVLC). The transform coefficients are coded using CAVLC, in which the run_before symbols are generated for a 4×4 block input. To speed up the CAVLC decoding, the run_before symbols need to be decoded in parallel. We implemented a new CAVLC table for simultaneous decoding of up to three run_befores. The simulation results show a Total Speed-up Factor of 205%˜144% over various resolutions and quantization steps.
Jakobsen, Sofie; Jensen, Frank
2014-12-09
We assess the accuracy of force field (FF) electrostatics at several levels of approximation from the standard model using fixed partial charges to conformational specific multipole fits including up to quadrupole moments. Potential-derived point charges and multipoles are calculated using least-squares methods for a total of ∼1000 different conformations of the 20 natural amino acids. Opposed to standard charge fitting schemes the procedure presented in the current work employs fitting points placed on a single isodensity surface, since the electrostatic potential (ESP) on such a surface determines the ESP at all points outside this surface. We find that the effect of multipoles beyond partial atomic charges is of the same magnitude as the effect due to neglecting conformational dependency (i.e., polarizability), suggesting that the two effects should be included at the same level in FF development. The redundancy at both the partial charge and multipole levels of approximation is quantified. We present an algorithm which stepwise reduces or increases the dimensionality of the charge or multipole parameter space and provides an upper limit of the ESP error that can be obtained at a given truncation level. Thereby, we can identify a reduced set of multipole moments corresponding to ∼40% of the total number of multipoles. This subset of parameters provides a significant improvement in the representation of the ESP compared to the simple point charge model and close to the accuracy obtained using the complete multipole parameter space. The selection of the ∼40% most important multipole sites is highly transferable among different conformations, and we find that quadrupoles are of high importance for atoms involved in π-bonding, since the anisotropic electric field generated in such regions requires a large degree of flexibility.
Multipole-preserving quadratures for discretization of functions
Genovese, Luigi
2015-01-01
Discretizing an analytic function on a uniform real-space grid is often done via a straightforward collocation method. This is ubiquitous in all areas of computational physics and quantum chemistry. An example in Density Functional Theory is given by the local external potential describing the interaction between ions and electrons. Also notable examples are given by the analytic functions defining compensation charges for range-separated electrostatic treatments. The accuracy of the collocation method used is therefore very important for the reliability of subsequent treatments like self-consistent field solutions of the electronic structure problems. When the real-space grid is too coarse, the collocation method introduces numerical artifacts typical of real-space treatments, like the so-called egg-box error, that may spoil the numerical stability of the description. We present in this paper a new quadrature scheme that is able to exactly preserve the multipoles of a given analytic function for a wide range...
Point sources and multipoles in inverse scattering theory
Potthast, Roland
2001-01-01
Over the last twenty years, the growing availability of computing power has had an enormous impact on the classical fields of direct and inverse scattering. The study of inverse scattering, in particular, has developed rapidly with the ability to perform computational simulations of scattering processes and led to remarkable advances in a range of applications, from medical imaging and radar to remote sensing and seismic exploration. Point Sources and Multipoles in Inverse Scattering Theory provides a survey of recent developments in inverse acoustic and electromagnetic scattering theory. Focusing on methods developed over the last six years by Colton, Kirsch, and the author, this treatment uses point sources combined with several far-reaching techniques to obtain qualitative reconstruction methods. The author addresses questions of uniqueness, stability, and reconstructions for both two-and three-dimensional problems.With interest in extracting information about an object through scattered waves at an all-ti...
Real space electrostatics for multipoles. III. Dielectric Properties
Lamichhane, Madan; Newman, Kathie E; Gezelter, J Daniel
2016-01-01
In the first two papers in this series, we developed new shifted potential (SP), gradient shifted force (GSF), and Taylor shifted force (TSF) real-space methods for multipole interactions in condensed phase simulations. Here, we discuss the dielectric properties of fluids that emerge from simulations using these methods. Most electrostatic methods (including the Ewald sum) require correction to the conducting boundary fluctuation formula for the static dielectric constants, and we discuss the derivation of these corrections for the new real space methods. For quadrupolar fluids, the analogous material property is the quadrupolar susceptibility. As in the dipolar case, the fluctuation formula for the quadrupolar susceptibility has corrections that depend on the electrostatic method being utilized. One of the most important effects measured by both the static dielectric and quadrupolar susceptibility is the ability to screen charges embedded in the fluid. We use potentials of mean force between solvated ions to...
Planar Multipol-Resonance-Probe: A Spectral Kinetic Approach
Friedrichs, Michael; Gong, Junbo; Brinkmann, Ralf Peter; Oberrath, Jens; Wilczek, Sebastian
2016-09-01
Measuring plasma parameters, e.g. electron density and electron temperature, is an important procedure to verify the stability and behavior of a plasma process. For this purpose the multipole resonance probe (MRP) represents a satisfying solution to measure the electron density. However the influence of the probe on the plasma through its physical presence makes it unattractive for some processes in industrial application. A solution to combine the benefits of the spherical MRP with the ability to integrate the probe into the plasma reactor is introduced by the planar model of the MRP (pMRP). Introducing the spectral kinetic formalism leads to a reduced simulation-circle compared to particle-in-cell simulations. The model of the pMRP is implemented and first simulation results are presented.
Collisionless Spectral Kinetic Simulation of Ideal Multipole Resonance Probe
Gong, Junbo; Wilczek, Sebastian; Szeremley, Daniel; Oberrath, Jens; Eremin, Denis; Dobrygin, Wladislaw; Schilling, Christian; Friedrichs, Michael; Brinkmann, Ralf Peter
2016-09-01
Active Plasma Resonance Spectroscopy denotes a class of industry-compatible plasma diagnostic methods which utilize the natural ability of plasmas to resonate on or near the electron plasma frequency ωpe. One particular realization of APRS with a high degree of geometric and electric symmetry is the Multipole Resonance Probe (MRP). The Ideal MRP(IMRP) is an even more symmetric idealization which is suited for theoretical investigations. In this work, a spectral kinetic scheme is presented to investigate the behavior of the IMRP in the low pressure regime. However, due to the velocity difference, electrons are treated as particles whereas ions are only considered as stationary background. In the scheme, the particle pusher integrates the equations of motion for the studied particles, the Poisson solver determines the electric field at each particle position. The proposed method overcomes the limitation of the cold plasma model and covers kinetic effects like collisionless damping.
Elliptical multipole wiggler beamlines at the advanced photon source
Energy Technology Data Exchange (ETDEWEB)
Beno, M.A. E-mail: beno@anl.gov; Kurtz, C.; Munkholm, A.; Ruett, U.; Engbretson, M.; Jennings, G.; Linton, J.; Knapp, G.S.; Montano, P.A
2001-07-21
The Basic Energy Sciences Synchrotron Radiation Center Collaborative Access Team has built three independent beamlines, which simultaneously utilize the X-ray radiation from an elliptical multipole wiggler, located at Sector 11 of the Advanced Photon Source. This insertion device produces circularly polarized X-rays on-axis and linearly polarized X-rays above and below the ring plane. The lower linearly polarized radiation is used in the monochromatic 11ID-D station for scattering and spectroscopy experiments in the 5-40 keV range. The on-axis circularly polarized photons are used for magnetic Compton scattering experiments in the 11ID-B station. The upper linearly polarized radiation is utilized by the high-energy diffraction station, 11ID-C. We report here on the beamline optics and experimental station equipment.
Wall, Christopher E; Cozza, Steven; Riquelme, Cecilia A; McCombie, W Richard; Heimiller, Joseph K; Marr, Thomas G; Leinwand, Leslie A
2011-01-01
The infrequently feeding Burmese python (Python molurus) experiences significant and rapid postprandial cardiac hypertrophy followed by regression as digestion is completed. To begin to explore the molecular mechanisms of this response, we have sequenced and assembled the fasted and postfed Burmese python heart transcriptomes with Illumina technology using the chicken (Gallus gallus) genome as a reference. In addition, we have used RNA-seq analysis to identify differences in the expression of biological processes and signaling pathways between fasted, 1 day postfed (DPF), and 3 DPF hearts. Out of a combined transcriptome of ∼2,800 mRNAs, 464 genes were differentially expressed. Genes showing differential expression at 1 DPF compared with fasted were enriched for biological processes involved in metabolism and energetics, while genes showing differential expression at 3 DPF compared with fasted were enriched for processes involved in biogenesis, structural remodeling, and organization. Moreover, we present evidence for the activation of physiological and not pathological signaling pathways in this rapid, novel model of cardiac growth in pythons. Together, our data provide the first comprehensive gene expression profile for a reptile heart.
M. de Jong (Marcel); R. Docter (Roel); H.J. van der Hoek (H.); E.P. Krenning (Eric); G. Hennemann
1994-01-01
textabstractThe transport and subsequent metabolism of triiodothyronine (T3) were studied in isolated perfused livers of euthyroid, hypothyroid, and hyperthyroid rats, both fed and 48-hour-fasted. T3 kinetics (transport and metabolism) during perfusion were evaluated by a two-pool model, whereas the
Polarizable Atomic Multipole Solutes in a Poisson-Boltzmann Continuum
Schnieders, Michael J.; Baker, Nathan A.; Ren, Pengyu; Ponder, Jay W.
2008-01-01
Modeling the change in the electrostatics of organic molecules upon moving from vacuum into solvent, due to polarization, has long been an interesting problem. In vacuum, experimental values for the dipole moments and polarizabilities of small, rigid molecules are known to high accuracy; however, it has generally been difficult to determine these quantities for a polar molecule in water. A theoretical approach introduced by Onsager used vacuum properties of small molecules, including polarizability, dipole moment and size, to predict experimentally known permittivities of neat liquids via the Poisson equation. Since this important advance in understanding the condensed phase, a large number of computational methods have been developed to study solutes embedded in a continuum via numerical solutions to the Poisson-Boltzmann equation (PBE). Only recently have the classical force fields used for studying biomolecules begun to include explicit polarization in their functional forms. Here we describe the theory underlying a newly developed Polarizable Multipole Poisson-Boltzmann (PMPB) continuum electrostatics model, which builds on the Atomic Multipole Optimized Energetics for Biomolecular Applications (AMOEBA) force field. As an application of the PMPB methodology, results are presented for several small folded proteins studied by molecular dynamics in explicit water as well as embedded in the PMPB continuum. The dipole moment of each protein increased on average by a factor of 1.27 in explicit water and 1.26 in continuum solvent. The essentially identical electrostatic response in both models suggests that PMPB electrostatics offers an efficient alternative to sampling explicit solvent molecules for a variety of interesting applications, including binding energies, conformational analysis, and pKa prediction. Introduction of 150 mM salt lowered the electrostatic solvation energy between 2–13 kcal/mole, depending on the formal charge of the protein, but had only a
The Formation of Multipoles during the High-Temperature Creep of Austenitic Stainless Steels
DEFF Research Database (Denmark)
Howell, J.; Nielsson, O.; Horsewell, Andy
1981-01-01
It is shown that multipole dislocation configurations can arise during power-law creep of certain austenitic stainless steels. These multipoles have been analysed in some detail for two particular steels (Alloy 800 and a modified AISI 316L) and it is suggested that they arise either during...... instantaneous loading or during the primary creep stage. Trace analysis has shown that the multipoles are confined to {1 1 1} planes during primary creep but are not necessarily confined to these planes during steady-state creep unless they are pinned by interstitials....
Analytical study of the conjecture rule for the combination of multipole effects in LHC
Guignard, Gilbert
1997-01-01
This paper summarizes the analytical investigation done on the conjecture law found by tracking for the effect on the dynamic aperture of the combination of two multipoles of various order. A one-dimensional model leading to an integrable system has been used to find closed formulae for the dynamic aperture associated with a fully distributed multipole. The combination has then been studied and the resulting expression compared with the assumed conjecture law. For integrated multipoles small with respect to the focusing strength, the conjecture appears to hold, though with an exponent different from the one expected by crude reasoning.
The gravitational time delay in the field of a slowly moving body with arbitrary multipoles
Soffel, Michael H
2014-01-01
We calculate the time delay of light in the gravitational field of a slowly moving body with arbitrary multipoles (mass and spin multipole moments) by the time-transfer-function (TTF) formalism. The parameters we use, first introduced by Kopeikin for a gravitational source at rest, make the integration of the TTF very elegant and simple. Results completely coincide with expressions from the literature. The results for a moving body (with constant velocity) with complete multipole-structure are new, according to our knowledge.
Energy Technology Data Exchange (ETDEWEB)
Chung, Ting-Yi; Huang, Szu-Jung; Fu, Huang-Wen; Chang, Ho-Ping; Chang, Cheng-Hsiang [National Synchrotron Radiation Research Center, Hsinchu Science Park, Hsinchu 30076, Taiwan (China); Hwang, Ching-Shiang [National Synchrotron Radiation Research Center, Hsinchu Science Park, Hsinchu 30076, Taiwan (China); Department of Electrophysics, National Chiao Tung University, Hsinchu 30050, Taiwan (China)
2016-08-01
The effect of an APPLE II-type elliptically polarized undulator (EPU) on the beam dynamics were investigated using active and passive methods. To reduce the tune shift and improve the injection efficiency, dynamic multipole errors were compensated using L-shaped iron shims, which resulted in stable top-up operation for a minimum gap. The skew quadrupole error was compensated using a multipole corrector, which was located downstream of the EPU for minimizing betatron coupling, and it ensured the enhancement of the synchrotron radiation brightness. The investigation methods, a numerical simulation algorithm, a multipole error correction method, and the beam-based measurement results are discussed.
Collective multipole excitations based on correlated realistic nucleon-nucleon interactions
Energy Technology Data Exchange (ETDEWEB)
Paar, N. [Zagreb Univ. (Croatia). Fac. of Science, Physics Dept.; Papakonstantinou, P.; Hergert, H.; Roth, R. [Technische Univ. Darmstadt (Germany). Inst. fuer Kernphysik
2006-05-24
We investigate collective multipole excitations for closed shell nuclei from {sup 16}O to {sup 208}Pb using correlated realistic nucleon-nucleon interactions in the framework of the random phase approximation (RPA). The dominant short-range central and tensor correlations a re treated explicitly within the Unitary Correlation Operator Method (UCOM), which provides a phase-shift equivalent correlated interaction VUCOM adapted to simple uncorrelated Hilbert spaces. The same unitary transformation that defines the correlated interaction is used to derive correlated transition operators. Using VUCOM we solve the Hartree-Fock problem and employ the single-particle states as starting point for the RPA. By construction, the UCOM-RPA is fully self-consistent, i.e. the same correlated nucleon-nucleon interact ion is used in calculations of the HF ground state and in the residual RPA interaction. Consequently, the spurious state associated with the center-of-mass motion is properly removed and the sum-rules are exhausted within {+-}3%. The UCOM-RPA scheme results in a collective character of giant monopole, dipole, and quadrupole resonances in closed-shell nuclei across the nuclear chart. For the isoscalar giant monopole resonance, the resonance energies are in agreement with experiment hinting at a reasonable compressibility. However, in the 1{sup -} and 2{sup +} channels the resonance energies are overestimated due to missing long-range correlations and three-body contributions. (orig.)
Multipole generator wind energy converter without gearbox and with variable speed
Energy Technology Data Exchange (ETDEWEB)
Wortmann, B.; Hansen, L.H.
2000-01-01
The idea of this industrial research project was a totally new concept of WTG for NEG Micon A/S. The result has been a multiple range of concepts. Siemens realised a complete design and construction of a multipole PMG generator. However, it was soon recognised that the multipole synchronous PMG concept of Siemens was too expensive. The change to a WRG concept improved the situation. However, it is still doubtful if an economic feasible solution can be obtained for use in a WTG. Evidently, it is necessary looking on other concepts of synchronous generators for wind energy conversion. One way of verifying the economic feasibility was to clarify uncertainty about necessary support technologies. Two support technologies were investigated: variable speed control and blade turning system. Both systems turned out to be interesting concepts on their own. A complete specification of the safety and control strategy for variable speed was developed within this project. The strategy was implemented onthe test WTG on the test site of Risoe National Laboratory. The test set-up is very flexible and is based on the use of a Siemens IGBT Frequency Converter. The WTG can be operated as a conventional stall regulated WTG or as variable speed WTG. For calculation purpose HawC has been enlarged as a first step by the possibility to simulate a stall controlled WTG equipped with an asynchronous generator. Various tests on loads and electrical grid quality can be realised for this case. The second element of the project was the blade turning system, A full scale test set-up made a lifecycle test program possible. Many new tools and valuable knowledge were gathered and developed. The FLEX 4 load calculation program has been adapted to active stall operation. The results of the project were very promising. Today, this research forms the basis for NEG Migon A/S active stall concept on the NM 2000. The project has broaden ed NEG Micon A/S horizon for new control strategies. New areas for
DEFF Research Database (Denmark)
Alemayehu, Fikadu Reta; Frenck, Georg; van der Linden, Leon
2013-01-01
The projected future climate will affect the global agricultural production negatively, however, to keep abreast of the expected increase in global population, the agricultural production must increase. Therefore, to safeguard the future crop yield and quality, the adaptive potential of crops...
Librado, Pablo; Der Sarkissian, Clio; Ermini, Luca; Schubert, Mikkel; Jónsson, Hákon; Albrechtsen, Anders; Fumagalli, Matteo; Yang, Melinda A; Gamba, Cristina; Seguin-Orlando, Andaine; Mortensen, Cecilie D; Petersen, Bent; Hoover, Cindi A; Lorente-Galdos, Belen; Nedoluzhko, Artem; Boulygina, Eugenia; Tsygankova, Svetlana; Neuditschko, Markus; Jagannathan, Vidhya; Thèves, Catherine; Alfarhan, Ahmed H; Alquraishi, Saleh A; Al-Rasheid, Khaled A S; Sicheritz-Ponten, Thomas; Popov, Ruslan; Grigoriev, Semyon; Alekseev, Anatoly N; Rubin, Edward M; McCue, Molly; Rieder, Stefan; Leeb, Tosso; Tikhonov, Alexei; Crubézy, Eric; Slatkin, Montgomery; Marques-Bonet, Tomas; Nielsen, Rasmus; Willerslev, Eske; Kantanen, Juha; Prokhortchouk, Egor; Orlando, Ludovic
2015-12-15
Yakutia, Sakha Republic, in the Siberian Far East, represents one of the coldest places on Earth, with winter record temperatures dropping below -70 °C. Nevertheless, Yakutian horses survive all year round in the open air due to striking phenotypic adaptations, including compact body conformations, extremely hairy winter coats, and acute seasonal differences in metabolic activities. The evolutionary origins of Yakutian horses and the genetic basis of their adaptations remain, however, contentious. Here, we present the complete genomes of nine present-day Yakutian horses and two ancient specimens dating from the early 19th century and ∼5,200 y ago. By comparing these genomes with the genomes of two Late Pleistocene, 27 domesticated, and three wild Przewalski's horses, we find that contemporary Yakutian horses do not descend from the native horses that populated the region until the mid-Holocene, but were most likely introduced following the migration of the Yakut people a few centuries ago. Thus, they represent one of the fastest cases of adaptation to the extreme temperatures of the Arctic. We find cis-regulatory mutations to have contributed more than nonsynonymous changes to their adaptation, likely due to the comparatively limited standing variation within gene bodies at the time the population was founded. Genes involved in hair development, body size, and metabolic and hormone signaling pathways represent an essential part of the Yakutian horse adaptive genetic toolkit. Finally, we find evidence for convergent evolution with native human populations and woolly mammoths, suggesting that only a few evolutionary strategies are compatible with survival in extremely cold environments.
A detailed proof of the fundamental theorem of STF multipole expansion in linearized gravity
Zschocke, Sven
2014-01-01
The linearized field equations of general relativity in harmonic coordinates are given by an inhomogeneous wave equation. In the region exterior to the matter field, the retarded solution of this wave equation can be expanded in terms of 10 Cartesian symmetric and tracefree (STF) multipoles in post-Minkowskian approximation. For such a multipole decomposition only three and rather weak assumptions are required: 1. No-incoming radiation condition. 2. The matter source is spatially compact. 3. A spherical expansion for the metric outside the matter source is possible. During the last decades, the STF multipole expansion has been established as a powerful tool in several fields of gravitational physics: celestial mechanics, theory of gravitational waves and in the theory of light propagation and astrometry. But despite its formidable importance, an explicit proof of the fundamental theorem of STF multipole expansion has not been presented thus far, while only some parts of it are distributed into several publica...
Review of non-Gaussianity at low and high multipoles from WMAP data
Verkhodanov, O. V.; Naselsky, P. D.; Chiang, L.-Y.; Doroshkevich, A. G.; Novikov, I. D.
2008-09-01
We review problems of non-Gaussianity analysis of the WMAP data. The non-Gaussianity has been detected by different methods in several multipole ranges. To our opinion, it could be due to some systematic effects of data analysis.
FastScatTM: An Object-Oriented Program for Fast Scattering Computation
Directory of Open Access Journals (Sweden)
Lisa Hamilton
1993-01-01
Full Text Available FastScat is a state-of-the-art program for computing electromagnetic scattering and radiation. Its purpose is to support the study of recent algorithmic advancements, such as the fast multipole method, that promise speed-ups of several orders of magnitude over conventional algorithms. The complexity of these algorithms and their associated data structures led us to adopt an object-oriented methodology for FastScat. We discuss the program's design and several lessons learned from its C++ implementation including the appropriate level for object-orientedness in numeric software, maintainability benefits, interfacing to Fortran libraries such as LAPACK, and performance issues.
DEFF Research Database (Denmark)
Librado, Pablo; Der Sarkissian, Clio; Ermini, Luca
2015-01-01
, extremely hairy winter coats, and acute seasonal differences in metabolic activities. The evolutionary origins of Yakutian horses and the genetic basis of their adaptations remain, however, contentious. Here, we present the complete genomes of nine present-day Yakutian horses and two ancient specimens......Yakutia, Sakha Republic, in the Siberian Far East, represents one of the coldest places on Earth, with winter record temperatures dropping below −70 °C. Nevertheless, Yakutian horses survive all year round in the open air due to striking phenotypic adaptations, including compact body conformations...... dating from the early 19th century and ∼5,200 y ago. By comparing these genomes with the genomes of two Late Pleistocene, 27 domesticated, and three wild Przewalski’s horses, we find that contemporary Yakutian horses do not descend from the native horses that populated the region until the mid...
The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate
Chu, Dominique; Barnes, David J.
2016-04-01
Bi-phasic or diauxic growth is often observed when microbes are grown in a chemically defined medium containing two sugars (for example glucose and lactose). Typically, the two growth stages are separated by an often lengthy phase of arrested growth, the so-called lag-phase. Diauxic growth is usually interpreted as an adaptation to maximise population growth in multi-nutrient environments. However, the lag-phase implies a substantial loss of growth during the switch-over. It therefore remains unexplained why the lag-phase is adaptive. Here we show by means of a stochastic simulation model based on the bacterial PTS system that it is not possible to shorten the lag-phase without incurring a permanent growth-penalty. Mechanistically, this is due to the inherent and well established limitations of biological sensors to operate efficiently at a given resource cost. Hence, there is a trade-off between lost growth during the diauxic switch and the long-term growth potential of the cell. Using simulated evolution we predict that the lag-phase will evolve depending on the distribution of conditions experienced during adaptation. In environments where switching is less frequently required, the lag-phase will evolve to be longer whereas, in frequently changing environments, the lag-phase will evolve to be shorter.
High Heat-Load Slits for the PLS Multipole Wiggler
Gil, Kyehwan; Kim, Young-Chan; Lee, Heung-Soo; Wha Chung, Chin
2005-01-01
The HFMX (High Flux Macromolecular X-ray crystallography) beamline under commissioning at Pohang Accelerator Laboratory uses beam from a multipole wiggler for MAD experiment. Two horizontal and vertical slits relevant to high heat load are installed at its front-end. In order to treat high heat load and to reduce beam scattering, the horizontal slit has two glidcop blocks with 10° of vertical inclination and its tungsten blades defining beam size are bolted on backsides of both blocks. The blocks of the slit are adjusted on fixed slides by two actuating bars, respectively. Water through channels machined along the actuating bars cool down the heat load of both blocks. The vertical slit has the same structure as the horizontal slit except its installation direction and angle of vertical inclination. The installed slits show stable operation performance and no alignment for the blocks is required by virtue of a pair of blocks translating on slides. The cooling performance of two slits is also shown to ...
Multipole analysis of redshift-space distortions around cosmic voids
Hamaus, Nico; Cousinou, Marie-Claude; Pisani, Alice; Aubert, Marie; Escoffier, Stéphanie; Weller, Jochen
2017-07-01
We perform a comprehensive redshift-space distortion analysis based on cosmic voids in the large-scale distribution of galaxies observed with the Sloan Digital Sky Survey. To this end, we measure multipoles of the void-galaxy cross-correlation function and compare them with standard model predictions in cosmology. Merely considering linear-order theory allows us to accurately describe the data on the entire available range of scales and to probe void-centric distances down to about 2 h-1Mpc. Common systematics, such as the Fingers-of-God effect, scale-dependent galaxy bias, and nonlinear clustering do not seem to play a significant role in our analysis. We constrain the growth rate of structure via the redshift-space distortion parameter β at two median redshifts, β(bar z=0.32)=0.599+0.134-0.124 and β(bar z=0.54)=0.457+0.056-0.054, with a precision that is competitive with state-of-the-art galaxy-clustering results. While the high-redshift constraint perfectly agrees with model expectations, we observe a mild 2σ deviation at bar z=0.32, which increases to 3σ when the data is restricted to the lowest available redshift range of 0.15
On the origin dependence of multipole moments in electromagnetism
Energy Technology Data Exchange (ETDEWEB)
Visschere, Patrick De [Ghent University, Department ELIS Sint-Pietersnieuwstraat 41, B-9000 Gent (Belgium)
2006-10-07
The standard description of material media in electromagnetism is based on multipoles. It is well known that these moments depend on the point of reference chosen, except for the lowest order. It is shown that this 'origin dependence' is not unphysical as has been claimed in the literature but forms only part of the effect of moving the point of reference. When the complementary part is also taken into account then different points of reference lead to different but equivalent descriptions of the same physical reality. This is shown at the microscopic as well as at the macroscopic level. A similar interpretation is valid regarding the 'origin dependence' of the reflection coefficients for reflection on a semi-infinite medium. We show that the 'transformation theory' which has been proposed to remedy this situation (and which is thus not needed) is unphysical since the transformation considered does not leave the boundary conditions invariant.
Infrared Extrapolations of Electromagnetic Multipole Moments and Transitions
Odell, Daniel; Papenbrock, Thomas; Platter, Lucas
2017-01-01
Basis truncations introduce systematic errors in observables calculated by representing the nuclear Hamiltonian in finite Hilbert spaces. Recent studies of the infrared convergence of finite basis calculations of energies and radii have led to accurate descriptions of numerical data. I will discuss how these concepts can be applied to the study of bound-state quadrupole moments and transitions as well as multipole transitions between bound-states and the continuum. I will show that good agreement is obtained between analytically derived and numerically computed convergence behavior in finite harmonic oscillator spaces for the nucleon-nucleon system. This opens the way to a more precise understanding of structure and reactions involving heavier nuclei. U.S. Dept of Energy, Office of Science under Nos. DEFG02-96ER40963, DE-AC05-00OR22725, DE-SC0008499; US-Israel Binational Science Foundation under Grant No. 2012212; National Science Foundation under Grant No. PHY-1516077 and No. PHY-1555030.
Revised Parameters for the AMOEBA Polarizable Atomic Multipole Water Model.
Laury, Marie L; Wang, Lee-Ping; Pande, Vijay S; Head-Gordon, Teresa; Ponder, Jay W
2015-07-23
A set of improved parameters for the AMOEBA polarizable atomic multipole water model is developed. An automated procedure, ForceBalance, is used to adjust model parameters to enforce agreement with ab initio-derived results for water clusters and experimental data for a variety of liquid phase properties across a broad temperature range. The values reported here for the new AMOEBA14 water model represent a substantial improvement over the previous AMOEBA03 model. The AMOEBA14 model accurately predicts the temperature of maximum density and qualitatively matches the experimental density curve across temperatures from 249 to 373 K. Excellent agreement is observed for the AMOEBA14 model in comparison to experimental properties as a function of temperature, including the second virial coefficient, enthalpy of vaporization, isothermal compressibility, thermal expansion coefficient, and dielectric constant. The viscosity, self-diffusion constant, and surface tension are also well reproduced. In comparison to high-level ab initio results for clusters of 2-20 water molecules, the AMOEBA14 model yields results similar to AMOEBA03 and the direct polarization iAMOEBA models. With advances in computing power, calibration data, and optimization techniques, we recommend the use of the AMOEBA14 water model for future studies employing a polarizable water model.
Scoring multipole electrostatics in condensed-phase atomistic simulations.
Bereau, Tristan; Kramer, Christian; Monnard, Fabien W; Nogueira, Elisa S; Ward, Thomas R; Meuwly, Markus
2013-05-09
Permanent multipoles (MTPs) embody a natural extension to common point-charge (PC) representations in atomistic simulations. In this work, we propose an alternative to the computationally expensive MTP molecular dynamics simulations by running a simple PC simulation and later reevaluate-"score''-all energies using the more detailed MTP force field. The method, which relies on the assumption that the PC and MTP force fields generate closely related phase spaces, is accomplished by enforcing identical sets of monopoles between the two force fields-effectively highlighting the higher MTP terms as a correction to the PC approximation. We first detail our consistent parametrization of the electrostatics and van der Waals interactions for the two force fields. We then validate the method by comparing the accuracy of protein-ligand binding free energies from both PC and MTP-scored representations with experimentally determined binding constants obtained by us. Specifically, we study the binding of several arylsulfonamide ligands to human carbonic anhydrase II. We find that both representations yield an accuracy of 1 kcal/mol with respect to experiment. Finally, we apply the method to rank the energetic contributions of individual atomic MTP coefficients for molecules solvated in water. All in all, MTP scoring is a computationally appealing method that can provide insight into the multipolar electrostatic interactions of condensed-phase systems.
Instability of reconstruction of the low CMB multipoles
DEFF Research Database (Denmark)
Naselsky, Pavel D.; Verkhodanov, Oleg V.; Nielsen, Mikkel T. B.
2007-01-01
We discuss the problem of the bias of the Internal Linear Combination (ILC) CMB map and show that it is closely related to the coefficient of cross-correlation K(l) of the true CMB and the foreground for each multipole l. We present analysis of the cross-correlation for the WMAP ILC quadrupole...... and octupole from the first (ILC(I)) and the third (ILC(III)) year data releases and show that these correlations are about -0.52-0.6. Analysing 10^4 Monte Carlo simulations of the random Gaussian CMB signals, we show that the distribution function for the corresponding coefficient of the cross-correlation has...... of debiasing of the ILC CMB and pointed out that reconstruction of the bias seems to be very problematic due to statistical uncertainties. In addition, instability of the debiasing illuminates itself for the quadrupole and octupole components through the flip-effect, when the even (l+m) modes can...
Pischetsrieder, Alexandra
1996-08-01
In laser welding, problems often arise from the accuracy required by the laser process, particularly where joints have narrow tolerance limits, e.g. with a fillet weld at an overlap joint. In a number of applications seam-tracking sensors can improve this situation. They are able to detect and follow the joint geometry autonomously. In addition to the tolerances, a varying gap between the parts to weld can cause welding flaws. To solve the problems caused by the height of the gap a functionality for adaptive welding can be integrated into the tracking sensor, rendering possible a determined influence on process parameters. Functional dependencies between the height of the gap and the welding parameters are presented in this paper. To further enhance the accuracy of path tracking the dynamic behavior of the system is investigated. With the integration of these dependencies into the tracking sensor, an algorithm for adaptive welding has been obtained, which takes another step towards the raise of profitability of laser installations by a simplified weld seam preparation and an enhanced stability of the welding process.
Jiang, Ling; Li, Shuang; Hu, Yi; Xu, Qing; Huang, He
2012-03-01
Laboratory adaptive evolution of microorganisms offers the possibility of relating acquired mutations to increased fitness of the organism under the conditions used. By combining a fibrous-bed bioreactor, we successfully developed a simple and valuable adaptive evolution strategy in repeated-batch fermentation mode with high initial substrate concentration and evolved Clostridium tyrobutyricum mutant with significantly improved butyric acid volumetric productivity up to 2.25 g/(L h), which is the highest value in batch fermentation reported so far. Further experiments were conducted to pay attention to glucose transport system in consideration of the high glucose consumption rate resulted from evolution. Complete characterization and comparison of the glucose phosphoenolpyruvate (PEP)-dependent phosphotransferase system (PTS) were carried out in the form of toluene-treated cells and cell-free extracts derived from both C. tyrobutyricum wide-type and mutant, while an alternative glucose transport route that requires glucokinase was confirmed by the phenomena of resistance to the glucose analogue 2-deoxyglucose and ATP-dependent glucose phosphorylation. Our results suggest that C. tyrobutyricum mutant is defective in PTS activity and compensates for this defect with enhanced glucokinase activity, resulting in the efficient uptake and consumption of glucose during the whole metabolism.
Li, Pao; Mei, Zhen; Cai, Wensheng; Shao, Xueguang
2014-07-01
A method for the fast determination of the components in a complex sample by using gas chromatography with mass spectrometry was developed and used for the quantitative analysis of phthalic acid esters in environmental water. In the method, the adaptively corrected mass spectra were used to compensate for the differences between the library spectra and the measured ones in the experiment. The correction was obtained by the iterative transformation of the library spectra using iterative target transformation factor analysis, and the resolution was performed by non-negative immune algorithm using the corrected spectra. Rapid analysis of 16 phthalic acid esters in water samples was achieved using fast elution gas chromatography with mass spectrometry measurements. The results show that the mass spectra and chromatographic profiles of the phthalic acid esters can be obtained from the overlapping signal of 13 min elution, and accurate quantitative analysis can be obtained. The recoveries of the phthalic acid esters obtained by standard addition are between 90.3 and 107.4%, and the relative standard deviations obtained in repeated measurements are less than 9%. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
Moon, Yong Ho; Yoon, Kun Su; Ha, Seok Wun
2009-12-01
A fast coeff_token decoding method based on new memory architecture is proposed to implement an efficient context-based adaptive variable length-coding (CAVLC) decoder. The heavy memory access needed in CAVLC decoding is a significant issue in designing a real system, such as digital multimedia broadcasting players, portable media players, and mobile phones with video, because it results in high power consumption and delay in operations. Recently, a new coeff_token variable-length decoding method has been suggested to achieve memory access reduction. However, it still requires a large portion of the total memory access in CAVLC decoding. In this work, an effective memory architecture is designed through careful examination of codewords in variable-length code tables. In addition, a novel fast decoding method is proposed to further reduce the memory accesses required for reconstructing the coeff_token element. Only one memory access is used for reconstructing each coeff_token element in the proposed method.
Khudyakov, J. I.; Champagne, C. D.; Meneghetti, L. M.; Crocker, D. E.
2017-01-01
Stress can compromise an animal’s ability to conserve metabolic stores and participate in energy-demanding activities that are critical for fitness. Understanding how wild animals, especially those already experiencing physiological extremes (e.g. fasting), regulate stress responses is critical for evaluating the impacts of anthropogenic disturbance on physiology and fitness, key challenges for conservation. However, studies of stress in wildlife are often limited to baseline endocrine measurements and few have investigated stress effects in fasting-adapted species. We examined downstream molecular consequences of hypothalamic-pituitary-adrenal (HPA) axis activation by exogenous adrenocorticotropic hormone (ACTH) in blubber of northern elephant seals due to the ease of blubber sampling and its key role in metabolic regulation in marine mammals. We report the first phocid blubber transcriptome produced by RNAseq, containing over 140,000 annotated transcripts, including metabolic and adipocytokine genes of interest. The acute response of blubber to stress axis activation, measured 2 hours after ACTH administration, involved highly specific, transient (lasting <24 hours) induction of gene networks that promote lipolysis and adipogenesis in mammalian adipocytes. Differentially expressed genes included key adipogenesis factors which can be used as blubber-specific markers of acute stress in marine mammals of concern for which sampling of other tissues is not possible. PMID:28186107
Multilevel Multipole-Free Fast Algorithm For Electromagnetic Scattering Problems In Layered Media
2006-09-29
outgoing-to-outgoing ( O2O ) shifting matrices that translate a child group to a parent group, incoming-to-incoming (I2I) shifting matrices that translate a...also O2I matrices for the layered, or stratified, medium contribution that are denoted as O2I-SM translation matrices. The O2O and I2I matrices are...the reader is referred to the references for more details on interpolation, outgoing-to- outgoing ( O2O ), incoming-to-incoming (I2I) matrices, and
Treecode and fast multipole method for N-body simulation with CUDA
Yokota, Rio
2010-01-01
Due to the variety and importance of applications of treecodes and FMM, the combination of algorithmic acceleration with hardware acceleration can have tremendous impact. Alas, programming these algorithms efficiently is no piece of cake. In this contribution, we aim to present GPU kernels for treecode and FMM in, as much as possible, an uncomplicated, accessible way. The interested reader should consult some of the copious literature on the subject for a deeper understanding of the algorithms themselves. Here, we will offer the briefest of summaries. We will focus our attention on achieving a GPU implementation that is efficient in its utilization of the architecture, but without applying the most advanced techniques known in the field (which would complicate the presentation).
Productive Large Scale Personal Computing: Fast Multipole Methods on GPU/CPU Systems Project
National Aeronautics and Space Administration — To be used naturally in design optimization, parametric study and achieve quick total time-to-solution, simulation must naturally and personally be available to the...
De Angelis, Francesco; Cimini, Domenico; Hocking, James; Martinet, Pauline; Kneifel, Stefan
2016-04-01
The Planetary Boundary Layer (PBL) is the single most important under-sampled part of the atmosphere. According to the WMO Statement Of Guidance For Global Numerical Weather Prediction (NWP), temperature and humidity profiles (in cloudy areas) are among the four critical atmospheric variables not adequately measured in the PBL. Ground-based microwave radiometers (MWR) provide temperature and humidity profiles in both clear- and cloudy-sky conditions with high temporal resolution and low-to-moderate vertical resolution, with information mostly residing in the PBL. Ground-based MWR offer to bridge this observational gap by providing continuous temperature and humidity information in the PBL. The MWR data assimilation into NWP models may be particularly important in nowcasting and severe weather initiation. The assimilation of thermodynamic profiles retrieved from MWR data has been recently experimented, but a way to possibly increase the impact is to directly assimilate measured radiances instead of retrieved profiles. The assimilation of observed radiances in a variational scheme requires the following tools: (i) a fast radiative transfer (RT) model to compute the simulated radiances at MWR channels from the NWP model fields (ii) the partial derivatives (Jacobians) of the fast radiative transfer model with respect to control variables to optimize the distances of the atmospheric state from both the first guess and the observations. Such a RT model is available from the EUMETSAT NWPSAF (Numerical Weather Prediction Satellite Application Facility) and well accepted in the NWP community: RTTOV. This model was developed for nadir-viewing passive visible, infrared, and microwave satellite radiometers, spectrometers and interferometers. It has been modified to handle ground-based microwave radiometer observations. This version of RTTOV, called RTTOV-gb, provides the tools needed to exploit ground-based upward looking MWR brightness temperatures into NWP variational data
Ren, Xiang
2012-01-01
Transform Invariant Low-rank Textures (TILT) is a novel and powerful tool that can effectively rectify a rich class of low-rank textures in 3D scenes from 2D images despite significant deformation and corruption. The existing algorithm for solving TILT is based on the alternating direction method (ADM). It suffers from high computational cost and is not theoretically guaranteed to converge to a correct solution. In this paper, we propose a novel algorithm to speed up solving TILT, with guaranteed convergence. Our method is based on the recently proposed linearized alternating direction method with adaptive penalty (LADMAP). To further reduce computation, warm starts are also introduced to initialize the variables better and cut the cost on singular value decomposition. Extensive experimental results on both synthetic and real data demonstrate that this new algorithm works much more efficiently and robustly than the existing algorithm. It could be at least five times faster than the previous method.
Dickson, Bradley M.; de Waal, Parker W.; Ramjan, Zachary H.; Xu, H. Eric; Rothbart, Scott B.
2016-10-01
In this communication we introduce an efficient implementation of adaptive biasing that greatly improves the speed of free energy computation in molecular dynamics simulations. We investigated the use of accelerated simulations to inform on compound design using a recently reported and clinically relevant inhibitor of the chromatin regulator BRD4 (bromodomain-containing protein 4). Benchmarking on our local compute cluster, our implementation achieves up to 2.5 times more force calls per day than plumed2. Results of five 1 μs-long simulations are presented, which reveal a conformational switch in the BRD4 inhibitor between a binding competent and incompetent state. Stabilization of the switch led to a -3 kcal/mol improvement of absolute binding free energy. These studies suggest an unexplored ligand design principle and offer new actionable hypotheses for medicinal chemistry efforts against this druggable epigenetic target class.
Laming, Sven R; Duperron, Sébastien; Gaudron, Sylvie M; Hilário, Ana; Cunha, Marina R
2015-12-01
Symbioses between microbiota and marine metazoa occur globally at chemosynthetic habitats facing imminent threat from anthropogenic disturbance, yet little is known concerning the role of symbiosis during early development in chemosymbiotic metazoans: a critical period in any benthic species' lifecycle. The emerging symbiosis of Idas (sensu lato) simpsoni mussels undergoing development is assessed over a post-larval-to-adult size spectrum using histology and fluorescence in situ hybridisation (FISH). Post-larval development shows similarities to that of both heterotrophic and chemosymbiotic mussels. Data from newly settled specimens confirm aposymbiotic, planktotrophic larval development. Sulphur-oxidising (SOX) symbionts subsequently colonise multiple exposed, non-ciliated epithelia shortly after metamorphosis, but only become abundant on gills as these expand with greater host size. This wide-spread bathymodiolin recorded from sulphidic wood, bone and cold-seep habitats, displays a suite of adaptive traits that could buffer against anthropogenic disturbance. Copyright © 2015 Elsevier Ltd. All rights reserved.
Dickson, Bradley M; Ramjan, Zachary H; Xu, H Eric; Rothbart, Scott B
2016-01-01
In this communication we introduce an efficient implementation of adaptive biasing that greatly improves the speed of free energy computation in molecular dynamics simulations. We investigated the use of accelerated simulations to inform on compound design using a recently reported and clinically relevant inhibitor of the chromatin regulator BRD4. Benchmarking on our local compute cluster, our implementation achieves up to 2.5 times more force calls per day than plumed2. Results of five 1{\\mu}second-long simulations are presented, which reveal a conformational switch in the BRD4 inhibitor between a binding competent and incompetent state. Stabilization of the switch led to a -3 kcal/mol improvement of absolute binding free energy. These studies suggest an unexplored ligand design principle and offer new actionable hypotheses for medicinal chemistry efforts against this druggable epigenetic target class.
Indhumathi, C; Cai, Y Y; Guan, Y Q; Opas, M; Zheng, J
2012-01-01
Confocal laser scanning microscopy has become a most powerful tool to visualize and analyze the dynamic behavior of cellular molecules. Photobleaching of fluorochromes is a major problem with confocal image acquisition that will lead to intensity attenuation. Photobleaching effect can be reduced by optimizing the collection efficiency of the confocal image by fast z-scanning. However, such images suffer from distortions, particularly in the z dimension, which causes disparities in the x, y, and z directions of the voxels with the original image stacks. As a result, reliable segmentation and feature extraction of these images may be difficult or even impossible. Image interpolation is especially needed for the correction of undersampling artifact in the axial plane of three-dimensional images generated by a confocal microscope to obtain cubic voxels. In this work, we present an adaptive cubic B-spline-based interpolation with the aid of lookup tables by deriving adaptive weights based on local gradients for the sampling nodes in the interpolation formulae. Thus, the proposed method enhances the axial resolution of confocal images by improving the accuracy of the interpolated value simultaneously with great reduction in computational cost. Numerical experimental results confirm the effectiveness of the proposed interpolation approach and demonstrate its superiority both in terms of accuracy and speed compared to other interpolation algorithms.
Price, Sarah L; Leslie, Maurice; Welch, Gareth W A; Habgood, Matthew; Price, Louise S; Karamertzanis, Panagiotis G; Day, Graeme M
2010-08-14
Crystal structure prediction for organic molecules requires both the fast assessment of thousands to millions of crystal structures and the greatest possible accuracy in their relative energies. We describe a crystal lattice simulation program, DMACRYS, emphasizing the features that make it suitable for use in crystal structure prediction for pharmaceutical molecules using accurate anisotropic atom-atom model intermolecular potentials based on the theory of intermolecular forces. DMACRYS can optimize the lattice energy of a crystal, calculate the second derivative properties, and reduce the symmetry of the spacegroup to move away from a transition state. The calculated terahertz frequency k = 0 rigid-body lattice modes and elastic tensor can be used to estimate free energies. The program uses a distributed multipole electrostatic model (Q, t = 00,...,44s) for the electrostatic fields, and can use anisotropic atom-atom repulsion models, damped isotropic dispersion up to R(-10), as well as a range of empirically fitted isotropic exp-6 atom-atom models with different definitions of atomic types. A new feature is that an accurate model for the induction energy contribution to the lattice energy has been implemented that uses atomic anisotropic dipole polarizability models (alpha, t = (10,10)...(11c,11s)) to evaluate the changes in the molecular charge density induced by the electrostatic field within the crystal. It is demonstrated, using the four polymorphs of the pharmaceutical carbamazepine C(15)H(12)N(2)O, that whilst reproducing crystal structures is relatively easy, calculating the polymorphic energy differences to the accuracy of a few kJ mol(-1) required for applications is very demanding of assumptions made in the modelling. Thus DMACRYS enables the comparison of both known and hypothetical crystal structures as an aid to the development of pharmaceuticals and other speciality organic materials, and provides a tool to develop the modelling of the
Michel-López, C Y; González-Mendoza, D; Grimaldo-Juarez, O
2013-09-27
The extraction of high-quality genomic DNA from Prosopis spp for polymerase chain reaction (PCR) amplification is complicated, owing to the presence of a high percentage of secondary metabolites that bind to or co-precipitate with nucleic acids. In the present study, we report a modified sodium dodecyl sulfate/phenol protocol that eliminates the use of liquid nitrogen in the maceration process, β-mercaptoethanol in the buffer extraction, and the ethanol precipitation step. The A₂₆₀/A₂₈₀ absorbance ratios of the isolated DNA were approximately 2.0 to 1.9, suggesting that the DNA fraction was pure and can be used for further PCR analysis. The DNA isolated by this protocol is of sufficient quality for molecular applications; this technique could be applied to other organisms that have similar substances that hinder DNA extraction. Finally, this proposal represents an alternative fast, cheap, and effective method for the isolation of genomic DNA from fresh leaves of Prosopis spp, even in low-technology laboratories.
Chew, W. C.; Song, J. M.; Lu, C. C.; Weedon, W. H.
1995-01-01
In the first phase of our work, we have concentrated on laying the foundation to develop fast algorithms, including the use of recursive structure like the recursive aggregate interaction matrix algorithm (RAIMA), the nested equivalence principle algorithm (NEPAL), the ray-propagation fast multipole algorithm (RPFMA), and the multi-level fast multipole algorithm (MLFMA). We have also investigated the use of curvilinear patches to build a basic method of moments code where these acceleration techniques can be used later. In the second phase, which is mainly reported on here, we have concentrated on implementing three-dimensional NEPAL on a massively parallel machine, the Connection Machine CM-5, and have been able to obtain some 3D scattering results. In order to understand the parallelization of codes on the Connection Machine, we have also studied the parallelization of 3D finite-difference time-domain (FDTD) code with PML material absorbing boundary condition (ABC). We found that simple algorithms like the FDTD with material ABC can be parallelized very well allowing us to solve within a minute a problem of over a million nodes. In addition, we have studied the use of the fast multipole method and the ray-propagation fast multipole algorithm to expedite matrix-vector multiplication in a conjugate-gradient solution to integral equations of scattering. We find that these methods are faster than LU decomposition for one incident angle, but are slower than LU decomposition when many incident angles are needed as in the monostatic RCS calculations.
Fast Harmonic Splines and Parameter Choice Methods
Gutting, Martin
2017-04-01
Solutions to boundary value problems in geoscience where the boundary is the Earth's surface are constructed in terms of harmonic splines. These are localizing trial functions that allow regional modeling or the improvement of a global model in a part of the Earth's surface. Some cases of the occurring kernels can be equipped with a fast matrix-vector multiplication using the fast multipole method (FMM). The main idea of the fast multipole algorithm consists of a hierarchical decomposition of the computational domain into cubes and a kernel approximation for the more distant points. The numerical effort of the matrix-vector multiplication becomes linear in reference to the number of points for a prescribed accuracy of the kernel approximation. This fast spline approximation which also allows the treatment of noisy data requires the choice of a smoothing parameter. We investigate several methods to (ideally automatically) choose this parameter with and without prior knowledge of the noise level. However, in order to keep a fast solution algorithm we do no longer have access to the whole matrix or e.g. its singular values whose computation requires a much larger numerical effort. This must be reflected by the parameter choice methods. Therefore, in some cases a further approximation is necessary. The performance of these methods is considered for different types of noise in a large simulation study with applications to gravitational field modeling as well as to boundary value problems.
The Fast Adaptive Resonance Theory Network%快速自适应共振理论网络
Institute of Scientific and Technical Information of China (English)
彭小萍; 林小竹; 王嵩
2012-01-01
基于实验心理学理论,按记忆强度分组自适应共振理论网络聚类,将模式识别过程划分成若干按序进行的子过程.通过合理设置网络参数,在保证准确识别的前提下,尽可能地避免了自适应共振网络所固有的遍历匹配运算.实验表明,新网络的模式识别性能与原网络相当,而计算效率却得到了显著提升.%In this paper, based on the experimental psychology, the network clusters have been grouped according to their level of memory strength, so the pattern recognition process can be divided into several sub-processes that are carried out In sequence. Through a reasonable setting of network parameters, -while ensuring the accurate recognition of the premise, the new network avoids the full matching operation inherent in the adaptive resonance networks as far as possible. Experiments show that the new network's pattern recognition performance is equivalent to the original network, but its calculating efficiency has been significantly improved.
Directory of Open Access Journals (Sweden)
Timm eSchoening
2015-04-01
Full Text Available Marine researchers continue to create large quantities of benthic images e.g. using AUVs (Autonomous Underwater Vehicles. In order to quantify the size of sessile objects in the images, a pixel-to-centimetre ratio is required for each image, often indirectly provided through a geometric laser point (LP pattern, projected onto the seafloor. Manual annotation of these LPs in all images is too time-consuming and thus infeasible for nowadays data volumes. Because of the technical evolution of camera rigs, the LP's geometrical layout and colour features vary for different expeditions and projects. This makes the application of one algorithm, tuned to a strictly defined LP pattern, also ineffective.Here we present the web-tool DELPHI, that efficiently learns the LP layout for one image transect / collection from just a small number of hand labelled LPs and applies this layout model to the rest of the data. The efficiency in adapting to new data allows to compute the LPs and the pixel-to-centimetre ratio fully automatic and with high accuracy. DELPHI is applied to two real-world examples and shows clear improvements regarding reduction of tuning effort for new LP patterns as well as increasing detection performance.
United polarizable multipole water model for molecular mechanics simulation
Energy Technology Data Exchange (ETDEWEB)
Qi, Rui; Wang, Qiantao; Ren, Pengyu, E-mail: pren@mail.utexas.edu [Department of Biomedical Engineering, The University of Texas at Austin, Austin, Texas 78712 (United States); Wang, Lee-Ping; Pande, Vijay S. [Department of Chemistry, Stanford University, Stanford, California 94305 (United States)
2015-07-07
We report the development of a united AMOEBA (uAMOEBA) polarizable water model, which is computationally 3–5 times more efficient than the three-site AMOEBA03 model in molecular dynamics simulations while providing comparable accuracy for gas-phase and liquid properties. In this coarse-grained polarizable water model, both electrostatic (permanent and induced) and van der Waals representations have been reduced to a single site located at the oxygen atom. The permanent charge distribution is described via the molecular dipole and quadrupole moments and the many-body polarization via an isotropic molecular polarizability, all located at the oxygen center. Similarly, a single van der Waals interaction site is used for each water molecule. Hydrogen atoms are retained only for the purpose of defining local frames for the molecular multipole moments and intramolecular vibrational modes. The parameters have been derived based on a combination of ab initio quantum mechanical and experimental data set containing gas-phase cluster structures and energies, and liquid thermodynamic properties. For validation, additional properties including dimer interaction energy, liquid structures, self-diffusion coefficient, and shear viscosity have been evaluated. The results demonstrate good transferability from the gas to the liquid phase over a wide range of temperatures, and from nonpolar to polar environments, due to the presence of molecular polarizability. The water coordination, hydrogen-bonding structure, and dynamic properties given by uAMOEBA are similar to those derived from the all-atom AMOEBA03 model and experiments. Thus, the current model is an accurate and efficient alternative for modeling water.
Multipole Matrix Elements for Dh-Systems and Their Asymptotics
Tarasov, V. F.
A “DH-system” is defined as a multidimensional hydrogen atom (or its one-particle analogue), D≥1. Investigating many Coulomb problems in ℝD it is necessary to know exact analytical expressions of multipole matrix elements D for DH-systems, where q=(N, µ) is a set of parameters, N —"principal” and µ — "orbital” quantum numbers. The paper deals with the new method for the evaluation of similar matrix elements using new properties of Appell’s function F2(x, y) to the vicinity of the singular point (1, 1). Such approach allows: 1) to get exact analytical expressions of these matrix elements (considering the selection rules) by means of Appell’s F2 (or Clausen’s 3F2) functions; 2) to reveal “latent” symmetry of diagonal matrix elements with respect to the point k0=-3/2, the above symmetry is connected with the property of Appell’s function F2 (1,1) mirror-like symmetry; 3) to find (exact) asymptotics of the off-diagonal matrix elements in terms of Horn’s function ψ1 (x, y); 4) to prove that the orthogonality of radial functions fNµ (D, r) over N and μ for DH-systems is connected with the properties of Appell’s F2 function to the vicinity of the singular point (1, 1), it generalizes the known result for 3H-atom by Pasternack and Sternheimer, J. Math. Phys. 3, 1280 (1962).
a Detailed Proof of the Fundamental Theorem of STF Multipole Expansion in Linearized Gravity
Zschocke, Sven
2014-10-01
The linearized field equations of general relativity in harmonic coordinates are given by an inhomogeneous wave equation. In the region exterior to the matter field, the retarded solution of this wave equation can be expanded in terms of 10 Cartesian symmetric and tracefree (STF) multipoles in post-Minkowskian approximation. For such a multipole decomposition only three and rather weak assumptions are required: (1) No-incoming-radiation condition. (2) The matter source is spatially compact. (3) A spherical expansion for the metric outside the matter source is possible. During the last decades, the STF multipole expansion has been established as a powerful tool in several fields of gravitational physics: celestial mechanics, theory of gravitational waves and in the theory of light propagation and astrometry. But despite its formidable importance, an explicit proof of the fundamental theorem of STF multipole expansion has not been presented so far, while only some parts of it are distributed into several publications. In a technical but more didactical form, an explicit and detailed mathematical proof of each individual step of this important theorem of STF multipole expansion is represented.
DEFF Research Database (Denmark)
Khanal, Prabhat; Husted, Sanne Vinter; Axel, Anne Marie Dixen
2014-01-01
-fat or a moderate diet until 6 months of age (around puberty), where metabolic and endocrine adaptability to fasting was examined, and subgroups of animals were killed. Results: Animals exposed to either prenatal under- or overnutrition had reduced subcutaneous fat deposition when fed a high-fat diet, resulting...
Self-similar oscillations of a Z pinch bounded by a magnetic multipole
Energy Technology Data Exchange (ETDEWEB)
Tendler, M.
1988-11-01
A new analytic, self-similar solution of the fluid equations with losses in a stabilized Z pinch is presented. A scaling is suggested for the net energy loss with plasma density and temperature typical for a Z pinch immersed in an external multipole magnetic field. The solution of the strongly nonlinear system of fluid equations is obtained by self-similar methods. Strongly aharmonic high frequency oscillations of the plasma parameters are found. It is emphasized that a static Z pinch cannot be stabilized by a stationary field of a magnetic multipole. Therefore the potentiality of these oscillations to affect the stability of Z pinches embedded in a magnetic multipole is investigated. The effect of the dynamic stabilization is considered by taking estimates.
Multipole analysis for electromagnetism and linearized gravity with irreducible Cartesian tensors
Energy Technology Data Exchange (ETDEWEB)
Damour, T.; Iyer, B.R. (Institut des Hautes Etudes Scientifiques 91440 Bures sur Yvette, France Departement d' Astrophysique Relativiste et de Cosmologie, Centre National de la Recherche Scientifique-Observatoire de Paris, 92195 Meudon CEDEX, France (FR))
1991-05-15
The relativistic time-dependent multipole expansion for electromagnetism and linearized gravity in the region outside a spatially compact source has been obtained directly using the formalism of irreducible Cartesian (i.e., symmetric trace-free) tensors. In the electromagnetic case, our results confirm the validity of the results obtained earlier by Campbell, Macek, and Morgan using the Debye potential formalism. However, in the more complicated linearized gravity case, the greater algebraic transparence of the Cartesian multipole approach has allowed us to obtain, for the first time, fully correct closed-form expressions for the time-dependent mass and spin multipole moments (the results of Campbell {ital et} {ital al}. for the mass moments turning out to be incorrect). The first two terms in the slow-motion expansion of the gravitational moments are explicitly calculated and shown to be equivalent to earlier results by Thorne and by Blanchet and Damour.
Energy Technology Data Exchange (ETDEWEB)
Kanduc, M; Podgornik, R [Department of Theoretical Physics, J Stefan Institute, SI-1000 Ljubljana (Slovenia); Naji, A [Department of Physics, Department of Chemistry and Biochemistry, Materials Research Laboratory, University of California, Santa Barbara, CA 93106 (United States); Jho, Y S; Pincus, P A [Materials Research Laboratory, University of California, Santa Barbara, CA 93106 (United States)
2009-10-21
We present general arguments for the importance, or lack thereof, of structure in the charge distribution of counterions for counterion-mediated interactions between bounding symmetrically charged surfaces. We show that on the mean field or weak coupling level, the charge quadrupole contributes the lowest order modification to the contact value theorem and thus to the intersurface electrostatic interactions. The image effects are non-existent on the mean field level even with multipoles. On the strong coupling level the quadrupoles and higher order multipoles contribute additional terms to the interaction free energy only in the presence of dielectric inhomogeneities. Without them, the monopole is the only multipole that contributes to the strong coupling electrostatics. We explore the consequences of these statements in all their generality.
Multipole correction of atomic monopole models of molecular charge distribution. I. Peptides
Sokalski, W. A.; Keller, D. A.; Ornstein, R. L.; Rein, R.
1993-01-01
The defects in atomic monopole models of molecular charge distribution have been analyzed for several model-blocked peptides and compared with accurate quantum chemical values. The results indicate that the angular characteristics of the molecular electrostatic potential around functional groups capable of forming hydrogen bonds can be considerably distorted within various models relying upon isotropic atomic charges only. It is shown that these defects can be corrected by augmenting the atomic point charge models by cumulative atomic multipole moments (CAMMs). Alternatively, sets of off-center atomic point charges could be automatically derived from respective multipoles, providing approximately equivalent corrections. For the first time, correlated atomic multipoles have been calculated for N-acetyl, N'-methylamide-blocked derivatives of glycine, alanine, cysteine, threonine, leucine, lysine, and serine using the MP2 method. The role of the correlation effects in the peptide molecular charge distribution are discussed.
A SMALL UNBALANCED MAGNETRON SPUTTERING SOURCE WITH MULTIPOLE MAGNETIC FIELD ANODE
Institute of Scientific and Technical Information of China (English)
郑思孝; 孙官清; 等
1994-01-01
A small unbalanced magnetron atom source with multipole cusp magnetic field anode is described.The co-axial magnetron rpinciple is extended to the circular planar magnetron atom source,which raises the efficiency of sputtering target area up to 60%.The multipole magnetic field is put in the anode.which makes the unbalanced magnetron atom source run in a higher discharge current at a lower arc voltage condition.Meanwhile.the sputtering atoms through out the anode can be ionized partially,because the electron reaching the anode have to suffer multiple collisons in order to advance across the multipole magnetic field lines in the anode,which enhances the chemical reactivity of the ejecting atoms in film growth and improve the property of film depositing.
Platonic topology and CMB fluctuations: Homotopy, anisotropy, and multipole selection rules
Kramer, Peter
2009-01-01
The Cosmic Microwave Background CMB originates from an early stage in the history of the universe. Observed low multipole contributions of CMB fluctuations have motivated the search for selection rules from the underlying topology of 3-space. Everitt (2004) has generated all homotopies for Platonic spherical 3-manifolds by face gluings. We transform the glue generators into isomorphic deck transformations. The deck transformations act on a spherical Platonic 3-manifold as prototile and tile the 3-sphere by its images. A complete set of orthonormal functions on the 3-sphere is spanned by the Wigner harmonic polynomials. For a tetrahedral, two cubic and three octahedral manifolds we construct algebraically linear combinations of Wigner polynomials, invariant under deck transformations and with domain the manifold. We prove boundary conditions on polyhedral faces from homotopy. By algebraic means we pass to a multipole expansion. Assuming random models of the CMB radiation, we derive multipole selection rules, d...
Valdivia, Valeska; Hennebelle, Patrick
2014-11-01
Context. Ultraviolet radiation plays a crucial role in molecular clouds. Radiation and matter are tightly coupled and their interplay influences the physical and chemical properties of gas. In particular, modeling the radiation propagation requires calculating column densities, which can be numerically expensive in high-resolution multidimensional simulations. Aims: Developing fast methods for estimating column densities is mandatory if we are interested in the dynamical influence of the radiative transfer. In particular, we focus on the effect of the UV screening on the dynamics and on the statistical properties of molecular clouds. Methods: We have developed a tree-based method for a fast estimate of column densities, implemented in the adaptive mesh refinement code RAMSES. We performed numerical simulations using this method in order to analyze the influence of the screening on the clump formation. Results: We find that the accuracy for the extinction of the tree-based method is better than 10%, while the relative error for the column density can be much more. We describe the implementation of a method based on precalculating the geometrical terms that noticeably reduces the calculation time. To study the influence of the screening on the statistical properties of molecular clouds we present the probability distribution function of gas and the associated temperature per density bin and the mass spectra for different density thresholds. Conclusions: The tree-based method is fast and accurate enough to be used during numerical simulations since no communication is needed between CPUs when using a fully threaded tree. It is then suitable to parallel computing. We show that the screening for far UV radiation mainly affects the dense gas, thereby favoring low temperatures and affecting the fragmentation. We show that when we include the screening, more structures are formed with higher densities in comparison to the case that does not include this effect. We
Institute of Scientific and Technical Information of China (English)
Metin Orbay; Telhat Ozdogan
2001-01-01
As an example of the use of the analytical formulas derived for electric multipole moment integrals over STOs in our previous work (I.L Guseinov,et al.,J.Mol.Struct.(Theochem) 465 (1999) 5),the 2v-pole electric moments have been calculated for the ground electronic states of LiH,BH and FH of the first-row diatomic hydride molecules. Calculated electric multipole moment values are in agreement with literatures.By the use of these analytical formulas the 2v -pole moments for multiatomic molecules can be evaluated most efficiently and accurately by employing STOs as basis sets.
Lim, Wen Xiang; Han, Song; Gupta, Manoj; MacDonald, Kevin F.; Singh, Ranjan
2017-08-01
We report on an experimental and computational (multipole decomposition) study of Fano resonance modes in complementary near-IR plasmonic metamaterials. Resonance wavelengths and linewidths can be controlled by changing the symmetry of the unit cell so as to manipulate the balance among multipole contributions. In the present case, geometrically inverting one half of a four-slot (paired asymmetric double bar) unit cell design changes the relative magnitude of magnetic quadrupole and toroidal dipole contributions leading to the enhanced quality factor, figure of merit, and spectral tuning of the plasmonic Fano resonance.
Termination shock thermal processes as a possible source for the CMB low-order multipole anomalies
2009-01-01
We discuss the possibility that the observed low-order multipole features of the cosmic microwave background radiation (CMB) all originate in the termination shock (TS) region of the heliosheath that surrounds the solar system. If the intrinsic CMB spectrum is assumed to be a pure monopole (2.73K) then thermodynamic processes occurring within the plasma region of the TS could imprint the observed power spectrum of the low-order multipoles and their alignment (the so-called "axis of evil") ont...
Apparatus and method of dissociating ions in a multipole ion guide
Webb, Ian K.; Tang, Keqi; Smith, Richard D.; Ibrahim, Yehia M.; Anderson, Gordon A.
2014-07-08
A method of dissociating ions in a multipole ion guide is disclosed. A stream of charged ions is supplied to the ion guide. A main RF field is applied to the ion guide to confine the ions through the ion guide. An excitation RF field is applied to one pair of rods of the ion guide. The ions undergo dissociation when the applied excitation RF field is resonant with a secular frequency of the ions. The multipole ion guide is, but not limited to, a quadrupole, a hexapole, and an octopole.
Multipole Field Effects for the Superconducting Parallel-Bar Deflecting/Crabbing Cavities
Energy Technology Data Exchange (ETDEWEB)
De Silva, Payagalage Subashini Uddika [Thomas Jefferson National Accelerator Facility, Newport News, VA (United States) and Old Dominion University, Norfolk, VA (United States); Delayen, Jean Roger [Old Dominion University, Norfolk, VA (United States)
2012-09-01
The superconducting parallel-bar deflecting/crabbing cavity is currently being considered as one of the design options in rf separation for the Jefferson Lab 12 GeV upgrade and for the crabbing cavity for the proposed LHC luminosity upgrade. Knowledge of multipole field effects is important for accurate beam dynamics study of rf structures. The multipole components can be accurately determined numerically using the electromagnetic surface field data in the rf structure. This paper discusses the detailed analysis of those components for the fundamental deflecting/crabbing mode and higher order modes in the parallel-bar deflecting/crabbing cavity.
Effects of Crab Cavities' Multipole Content in an Electron-Ion Collider
Energy Technology Data Exchange (ETDEWEB)
Satogata, Todd J. [Jefferson Lab., Newport News, VA (United States); Morozov, Vasiliy [Jefferson Lab., Newport News, VA (United States); Delayen, Jean R. [Old Dominion Univ., Norfolk, VA (United States); Jefferson Lab., Newport News, VA (United States); Castillo, Alejandro [Old Dominion Univ., Norfolk, VA (United States)
2015-09-01
The impact on the beam dynamics of the Medium Energy Electron-Ion Colider (MEIC) due to the multipole content of the 750 MHz crab cavity was studied using thin multipole elements for 6D phase space particle tracking in ELEGANT. Target values of the sextupole component for the cavity’s field expansion were used to perform preliminary studies on the proton beam stability when compared to the case of pure dipole content of the rf kicks. Finally, important effects on the beam sizes due to non-linear components of the crab cavities’ fields were identified, and some criteria for their future study were proposed.
ADAPTIVE ELLIPSOIDAL ACOUSTIC INFINITE ELEMENT
Institute of Scientific and Technical Information of China (English)
Yang Ruiliang; Wang Hongzhen
2004-01-01
It is shown that the basis of the ellipsoidal acoustic infinite element Burnett method,the multipole expansion,cannot represent real ellipsoidal acoustic field exactly.To solve the problem,a weight of angular direction is added to the multipole expansion.The comparison of the modified method and the prime method shows that the modified method can describe and solve the ellipsoidal acoustic field more accurately than ever.A dilating sphere is used to test the new method further.Unlike other infinite element methods,varied ratio of the ellipsoidal artificial boundary instead of sphere is used.The pressure value of the artificial boundary is utilized as the initial value of the new method.Then the radiating phenomena of the ellipsoidal acoustic field can be researched using the new method.These examples show the feasibility of the adaptive method.
Fast algorithms for Quadrature by Expansion I: Globally valid expansions
Rachh, Manas; Klöckner, Andreas; O'Neil, Michael
2017-09-01
The use of integral equation methods for the efficient numerical solution of PDE boundary value problems requires two main tools: quadrature rules for the evaluation of layer potential integral operators with singular kernels, and fast algorithms for solving the resulting dense linear systems. Classically, these tools were developed separately. In this work, we present a unified numerical scheme based on coupling Quadrature by Expansion, a recent quadrature method, to a customized Fast Multipole Method (FMM) for the Helmholtz equation in two dimensions. The method allows the evaluation of layer potentials in linear-time complexity, anywhere in space, with a uniform, user-chosen level of accuracy as a black-box computational method. Providing this capability requires geometric and algorithmic considerations beyond the needs of standard FMMs as well as careful consideration of the accuracy of multipole translations. We illustrate the speed and accuracy of our method with various numerical examples.
Fast adaptive backup routing for mobile Ad Hoc network%移动Ad Hoc网快速自适应后备路由协议
Institute of Scientific and Technical Information of China (English)
周鹏
2012-01-01
移动Ad Hoc网拓扑结构经常变化.自适应后备路由局部修复AODV协议AODV-ABL通过监听RREP包和数据包来产生后备路由,并存于后备路由表中.仅当链路错误时,AODV-ABL才试图利用后备路由表进行局部修复.为提高对网络拓扑变化的自适应性,在AODV-ABL基础上,提出了一种快速自适应后备AODV路由协议AODV-FABL.AODV-FABL合并主路由表和后备路由表,在监听包时同步更新路由,路由能尽快地得到优化.实验结果表明,AODV-FABL取得了比AODV-LR、AODV-ABL更好的包投递率、端对端时延、控制开销和对流量负载变化的适应性.%The network topology changes frequently in mobile Ad Hoc networks. In AODV-Adaptive Backup with Local repair routing (AODV-ABL) protocol, the backup route can be created by overhearing RREP packets and data packets and can be stored in alternate route table. Only when the link error occurs, AODV-ABL tries to start a local repair process by using alternate route table. In order to improve the adaptability to the network topology changing, a Fast AODV-ABL routing (AODV-FABL) protocol, which based on AODV-ABL, is proposed. AODV-FABL merges the primary route table with the alternate route table, and updates routes when overhearing packets, thus the routes can be optimized as soon as possible. Experimental results show that AODV-FABL has better packet delivery ratio, end-to-end delay, control overhead and adaptability to the variational traffic load than AODV-LR and AODV-ABL.
Efficient Kriging via Fast Matrix-Vector Products
Memarsadeghi, Nargess; Raykar, Vikas C.; Duraiswami, Ramani; Mount, David M.
2008-01-01
Interpolating scattered data points is a problem of wide ranging interest. Ordinary kriging is an optimal scattered data estimator, widely used in geosciences and remote sensing. A generalized version of this technique, called cokriging, can be used for image fusion of remotely sensed data. However, it is computationally very expensive for large data sets. We demonstrate the time efficiency and accuracy of approximating ordinary kriging through the use of fast matrixvector products combined with iterative methods. We used methods based on the fast Multipole methods and nearest neighbor searching techniques for implementations of the fast matrix-vector products.
Dou, Tai H.; Min, Yugang; Neylon, John; Thomas, David; Kupelian, Patrick; Santhanam, Anand P.
2016-03-01
Deformable image registration (DIR) is an important step in radiotherapy treatment planning. An optimal input registration parameter set is critical to achieve the best registration performance with the specific algorithm. Methods In this paper, we investigated a parameter optimization strategy for Optical-flow based DIR of the 4DCT lung anatomy. A novel fast simulated annealing with adaptive Monte Carlo sampling algorithm (FSA-AMC) was investigated for solving the complex non-convex parameter optimization problem. The metric for registration error for a given parameter set was computed using landmark-based mean target registration error (mTRE) between a given volumetric image pair. To reduce the computational time in the parameter optimization process, a GPU based 3D dense optical-flow algorithm was employed for registering the lung volumes. Numerical analyses on the parameter optimization for the DIR were performed using 4DCT datasets generated with breathing motion models and open-source 4DCT datasets. Results showed that the proposed method efficiently estimated the optimum parameters for optical-flow and closely matched the best registration parameters obtained using an exhaustive parameter search method.
Yang, Wei; Zeng, Hong-cheng; Chen, Jie; Wang, Peng-bo
2014-01-01
Adaptive sliding receive-window (ASRW) technique was usually introduced in airborne squint synthetic aperture radar (SAR) systems. Airborne squint spotlight SAR varies its receive-window starting time pulse-by-pulse as a function of range-walk, namely, the linear term of range cell migration (RCM). As a result, a huge data volume of the highly squint spotlight SAR echo signal can be significantly reduced. Because the ASRW technique changes the echo-receive starting time and Doppler history, the conventional image algorithm cannot be employed to directly focus airborne squint spotlight ASRW-SAR data. Therefore, a fast image-formation algorithm, based on the principle of the wave number domain algorithm (WDA) and azimuth deramping processing, was proposed for accurately and efficiently focusing the squint spotlight ASRW-SAR data. Azimuth deramping preprocessing was implemented for eliminating azimuth spectrum aliasing. Moreover, bulk compression and modified Stolt mapping were utilized for high-precision focusing. Additionally, geometric correction was employed for compensating the image distortion resulting from the ASRW technique. The proposed algorithm was verified by evaluating the image performance of point targets in different squint angles. In addition, a detailed analysis of computation loads in the appendix indicates that the processing efficiency can be greatly improved, e.g., the processing efficiency could be improved by 17 times in the 70-deg squint angle by applying the proposed image algorithm to the squint spotlight ASRW-SAR data.
一种快速收敛的自适应蚁群算法%Investigation on a Fast Convergent Adaptive Ant Colony Optimization Algorithm
Institute of Scientific and Technical Information of China (English)
潘伟强; 李长云; 胡盛龙
2012-01-01
The ant colony optimization has deficiencies of slow convergence speed and difficult parameters selection.By analyzing the parameters'effect on the algorithm and comparing multiple parameter optimization methods,adopts the hybrid algorithm of particle swarm optimization and ant colony optimization to optimize parameters,and proposes a fast convergent adaptive ant colony optimization.The simulation of the traveling salesman problem shows that the algorithm is feasible and effective.%针对蚁群算法收敛速度慢、参数选择难的不足,通过分析各参数对算法的影响和比较多种参数寻优方法,采用粒子群算法对蚁群算法进行参数寻优,并提出了一种快速收敛的自适应蚁群算法。针对旅行商问题的仿真试验表明,该算法是可行且有效的。
Computational Study of Plasma Response to a Variable Electric Multipole Configuration
Hicks, Nathaniel
2016-10-01
A computational study is presented of the behavior of a low temperature, quasi-neutral plasma in a three-dimensional, time-varying electric multipole field. A 3-D particle- in-cell (PIC) plasma code is used to simulate the process. The simulations study the effect of the plasma species' mass difference on the plasma response, with the multipole field frequency being chosen, for example, to interact strongly with light particles but negligibly with heavy ones. The effect of focusing the light species to the center of the multipole structure is examined, with space charge neutralized by the presence of the heavy species. The dependence of plasma density on driving field parameters and geometry (order of multipole, shape of equipotential surfaces) is studied, as well as the behavior of the plasma near gyroresonance in the presence of a background magnetic field. The formation and dependences of the RF plasma sheath are studied, as the sheath responds to variation of the plasma and external field characteristics. The results of the computer modeling study are to inform an initial experimental design and study of the same effects. Supported by NSF/DOE Partnership in Basic Plasma Physics and Engineering Award PHY-1619615.
Identifying the Development in Phase and Amplitude of Dipole and Multipole Radiation
Rice, E. M.; Bradshaw, D. S.; Saadi, K.; Andrews, D. L.
2012-01-01
The spatial variation in phase and the propagating wave-front of plane wave electromagnetic radiation are widely familiar text-book territory. In contrast, the developing amplitude and phase of radiation emitted by a dipole or multipole source generally receive less attention, despite the prevalence of these systems. There is additional complexity…
Fast Adaptive Maneuvering Experiment (Fame)
1992-03-29
29. 1992 35 0e /* Declaration of the Hll register addresses defined in t’e litzary /* c:\\introl\\ kjh \\kjhstart.oll...Update History: Version 1.0, February 23, 1992 1* *** indicates functions and their prototypes S--- -indicates ISRs #include "c:\\introl\\ kjh \\KJHSTDIO.h...used WITH the /* JBUFFALO monitor. The executable code and initialized tS placed in an 8Kx8 RA-M at OxCOOC. * /* Modification history: /V KJH : for
Liu, Yangfan; Bolton, J Stuart
2016-08-01
The (Cartesian) multipole series, i.e., the series comprising monopole, dipoles, quadrupoles, etc., can be used, as an alternative to the spherical or cylindrical wave series, in representing sound fields in a wide range of problems, such as source radiation, sound scattering, etc. The proofs of the completeness of the spherical and cylindrical wave series in these problems are classical results, and it is also generally agreed that the Cartesian multipole series spans the same space as the spherical waves: a rigorous mathematical proof of that statement has, however, not been presented. In the present work, such a proof of the completeness of the Cartesian multipole series, both in two and three dimensions, is given, and the linear dependence relations among different orders of multipoles are discussed, which then allows one to easily extract a basis from the multipole series. In particular, it is concluded that the multipoles comprising the two highest orders in the series form a basis of the whole series, since the multipoles of all the lower source orders can be expressed as a linear combination of that basis.
Beu, Steven C; Hendrickson, Christopher L; Marshall, Alan G
2011-03-01
Radiofrequency (rf) multipole ion guides are widely used to transfer ions through the strong magnetic field gradient between source and analyzer regions of external source Fourier transform ion cyclotron resonance mass spectrometers. Although ion transfer as determined solely by the electric field in a multipole ion guide has been thoroughly studied, transfer influenced by immersion in a strong magnetic field gradient has not been as well characterized. Recent work has indicated that the added magnetic field can have profound effects on ion transfer, ultimately resulting in loss of ions initially contained within the multipole. Those losses result from radial ejection of ions due to transient cyclotron resonance that occurs when ions traverse a region in which the magnetic field results in an effective cyclotron frequency equal to the multipole rf drive frequency divided by the multipole order (multipole order is equal to one-half the number of poles). In this work, we describe the analytical basis for ion resonance in a rf multipole ion guide with superposed static magnetic field and compare with results of numerical trajectory simulations. © American Society for Mass Spectrometry, 2011
Cheaper Synthesis Of Multipole-Brushless-dc-Motor Current
Alhorn, Dean C.; Howard, David E.
1994-01-01
Circuit converts output of single two-phase shaft-angle resolver to that of multi-speed three-phase shaft-angle resolver. Converter circuit applicable to generation of multispeed, multiphase shaft-angle-resolver signals from single two-phase shaft-angle resolver. Combination of converter circuit and single two-phase shaft-angle resolver offer advantages in cost, weight, size, and complexity. Design readily adaptable to two-phase motor.
Reply to Comment on 'On the origin dependence of multipole moments in electromagnetism'
Energy Technology Data Exchange (ETDEWEB)
De Visschere, Patrick [UGent, ELIS, Sint-Pietersnieuwstraat 41, B-9000 Gent (Belgium)
2010-12-22
In this reply, we emphasize that the goal of our original paper was to show that a straightforward application of standard multipole theory does not lead to unphysical results as claimed by Raab and de Lange. We stress once more that an origin shift for calculating the multipoles must be accompanied by a relocation of these multipoles, which compensates the effects of the origin dependence of the multipoles. We point out that the position of the macroscopic boundary is a relevant parameter. We agree that the transformation proposed by Raab and de Lange could still be useful supposing it only affects the phase of the reflected/trasmitted waves. We dispute that the transformation as derived by Raab and de Lange is unique. (reply)
Energy Technology Data Exchange (ETDEWEB)
Belles, Randy [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Poore, III, Willis P. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Brown, Nicholas R. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Flanagan, George F. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Holbrook, Mark [Idaho National Lab. (INL), Idaho Falls, ID (United States); Moe, Wayne [Idaho National Lab. (INL), Idaho Falls, ID (United States); Sofu, Tanju [Argonne National Lab. (ANL), Argonne, IL (United States)
2017-03-01
This report proposes adaptation of the previous regulatory gap analysis in Chapter 4 (Reactor) of NUREG 0800, Standard Review Plan (SRP) for the Review of Safety Analysis Reports for Nuclear Power Plants: LWR [Light Water Reactor] Edition. The proposed adaptation would result in a Chapter 4 review plan applicable to certain advanced reactors. This report addresses two technologies: the sodium-cooled fast reactor (SFR) and the modular high temperature gas-cooled reactor (mHTGR). SRP Chapter 4, which addresses reactor components, was selected for adaptation because of the possible significant differences in advanced non-light water reactor (non-LWR) technologies compared with the current LWR-based description in Chapter 4. SFR and mHTGR technologies were chosen for this gap analysis because of their diverse designs and the availability of significant historical design detail.
A fast algorithm for radiative transport in isotropic media
Ren, Kui; Zhong, Yimin
2016-01-01
We propose in this work a fast numerical algorithm for solving the equation of radiative transfer (ERT) in isotropic media. The algorithm has two steps. In the first step, we derive an integral equation for the angularly averaged ERT solution by taking advantage of the isotropy of the scattering kernel, and solve the integral equation with a fast multipole method (FMM). In the second step, we solve a scattering-free transport equation to recover the original ERT solution. Numerical simulations are presented to demonstrate the performance of the algorithm for both homogeneous and inhomogeneous media.
Hierarchy of Universal Relations for Neutron Stars in Terms of Multipole Moments
Manko, V S
2016-01-01
Recent studies of the analytical and numerical models of neutron stars strongly suggest that their exterior field can be described by only four arbitrary parameters of the 2-soliton solution of Einstein's equations. Assuming that this is the case, we show that there exists an infinite hierarchy of the universal relations for neutron stars in terms of multipole moments that arises as a series of the degeneration conditions for generic soliton solutions. The simplest of these relations yields a correct expression for the mass-hexadecapole moment as a function of the angular momentum, revealing a need for a more precise definition of this and higher multipole moments in the numerical models of neutron stars.
Termination shock thermal processes as a possible source for the CMB low-order multipole anomalies
Sharpe, H N
2009-01-01
We discuss the possibility that the observed low-order multipole features of the cosmic microwave background radiation (CMB) all originate in the termination shock (TS) region of the heliosheath that surrounds the solar system. If the intrinsic CMB spectrum is assumed to be a pure monopole (2.73K) then thermodynamic processes occurring within the plasma region of the TS could imprint the observed power spectrum of the low-order multipoles and their alignment (the so-called "axis of evil") onto this background isotropic CMB. Conditions are outlined for the geometric shape of the TS region. A key requirement of this model is that the TS plasma be characterized as an optically thin graybody with non-LTE perturbations. Data from the ongoing Voyager missions is critical to this study.
Method of reducing multipole content in a conductor assembly during manufacture
Energy Technology Data Exchange (ETDEWEB)
Meinke, Rainer
2016-05-24
A method for manufacture of a conductor assembly. The assembly is of the type which, when conducting current, generates a magnetic field or in which, in the presence of a changing magnetic field, a voltage is induced. In an example embodiment one or more first coil rows are formed. The assembly has multiple coil rows about an axis with outer coil rows formed about inner coil rows. A determination is made of deviations from specifications associated with the formed one or more first coil rows. One or more deviations correspond to a magnitude of a multipole field component which departs from a field specification. Based on the deviations, one or more wiring patterns are generated for one or more second coil rows to be formed about the one or more first coil rows. The one or more second coil rows are formed in the assembly. The magnitude of each multipole field component that departs from the field specification is offset.
Efficient evaluation of antenna fields by a time-domain multipole analysis
Directory of Open Access Journals (Sweden)
J. Adam
2009-05-01
Full Text Available The contribution describes a systematic method to efficiently determine frequency-domain electromagnetic antenna fields and characteristics for a broad spectrum via a single time-domain (e.g., Finite-Difference Time-Domain, FDTD calculation. From a time-domain simulation of an antenna driven by a wide-band signal, a single modified Fourier transformation yields the frequency-domain multipole amplitudes. The corresponding multipole expansions are valid for the entire spectrum of the input pulse and at any point outside a minimum sphere enclosing the antenna. This allows a computationally cheap and elegant post-processing of arbitrary antenna characteristics. As an example of use the method is applied to determine high-resolution three-dimensional radiation patterns of an antipodal Vivaldi antenna.
Local geometry of electromagnetic fields and its role in molecular multipole transitions
Yang, Nan
2010-01-01
Electromagnetic fields with complex spatial variation routinely arise in Nature. We study the response of a small molecule to monochromatic fields of arbitrary three-dimensional geometry. First, we consider the allowed configurations of the fields and field gradients at a single point in space. Many configurations cannot be generated from a single plane wave, regardless of polarization, but any allowed configuration can be generated by superposition of multiple plane waves. There is no local configuration of the fields and gradients that requires near-field effects. Second, we derive a set of local electromagnetic quantities, where each couples to a particular multipole transition. These quantities are small or zero in plane waves, but can be large in regions of certain superpositions of plane waves. Our findings provide a systematic framework for designing far-field and near-field experiments to drive multipole transitions. The proposed experiments provide information on molecular structure that is inaccessi...
Rapid modelling of the redshift-space power spectrum multipoles for a masked density field
Wilson, M. J.; Peacock, J. A.; Taylor, A. N.; de la Torre, S.
2017-01-01
In this work, we reformulate the forward modelling of the redshift-space power spectrum multipole moments for a masked density field, as encountered in galaxy redshift surveys. Exploiting the symmetries of the redshift-space correlation function, we provide a masked-field generalization of the Hankel transform relation between the multipole moments in real and Fourier space. Using this result, we detail how a likelihood analysis requiring computation for a broad range of desired P(k) models may be executed 103-104 times faster than with other common approaches, together with significant gains in spectral resolution. We present a concrete application to the complex angular geometry of the VIMOS Public Extragalactic Redshift Survey PDR-1 release and discuss the validity of this technique for finite-angle surveys.
FRICTIONAL CONTACT MULTIPOLE-BEM AND 3-D ANALYSIS OF SCREWPAIRS
Institute of Scientific and Technical Information of China (English)
Chen Xiumin; Shen Guangxian; Liu Deyi
2004-01-01
The 3-D traction field in the pressure screw-pair of a 3 500 heavy and medium plate mill press down system is successfully calculated by applying the 3-D frictional contact multipole-BEM and the corresponding program that has been developed. The computing results show the medium diameter orientation is unreliable, especially under the interference of an outer force couple. Under such working conditions, the circumferential traction distribution on the screw teeth is extremely uneven, which is the main reason for the destruction and short life time of screw-pairs. When utilizing the same precision (the relative tolerance is 10×10-5),the mltipole-BEM uses almost the CPU time as used by the FEM,but the needed computer menory size is only one eighieth of that needed by the FEM(10 MB vs.800 MB).The multipole-BEM is well suited for computing large-scale engineering problems.
On the evaluation of molecular dipole moments from multipole refinement of X-ray diffraction data
Abramov, Yu. A.; Volkov, A. V.; Coppens, P.
1999-09-01
Lack of physical constraints in the purely mathematical multipole refinement model can lead to basis set overlap errors in the evaluation of static molecular properties from X-ray diffraction data. For the molecular dipole moment, the error is large for several of the crystals tested in this study: DL-histidine, DL-proline, p-nitroaniline and p-amino- p'-nitrobiphenyl. Two restricted models are tested. In the first, atomic charges are constrained at κ-refinement values, while in the second κ'-values based on multipole refinements of theoretical ab-initio structure factors are used to reduce the flexibility of the model. Both models provide a more localized description of the pseudo atoms compared with an unrestricted refinement, but the κ'-restricted model gives a more consistent representation of the molecular dipole moments and superior agreement with the theoretical deformation density for DL-histidine.
Elking, Dennis M
2016-08-15
New equations for torque and atomic force are derived for use in flexible molecule force fields with atomic multipoles. The expressions are based on Cartesian tensors with arbitrary multipole rank. The standard method for rotating Cartesian tensor multipoles and calculating torque is to first represent the tensor with n indexes and 3(n) redundant components. In this work, new expressions for directly rotating the unique (n + 1)(n + 2)/2 Cartesian tensor multipole components Θpqr are given by introducing Cartesian tensor rotation matrix elements X(R). A polynomial expression and a recursion relation for X(R) are derived. For comparison, the analogous rotation matrix for spherical tensor multipoles are the Wigner functions D(R). The expressions for X(R) are used to derive simple equations for torque and atomic force. The torque and atomic force equations are applied to the geometry optimization of small molecule crystal unit cells. In addition, a discussion of computational efficiency as a function of increasing multipole rank is given for Cartesian tensors. © 2016 Wiley Periodicals, Inc.
Multipole electron-density modelling of synchrotron powder diffraction data: the case of diamond
DEFF Research Database (Denmark)
Svendsen, H.; Overgaard, J.; Busselez, R.;
2010-01-01
Accurate structure factors are extracted from synchrotron powder diffraction data measured on crystalline diamond based on a novel multipole model division of overlapping reflection intensities. The approach limits the spherical-atom bias in structure factors extracted from overlapping powder data...... parameter. This directly exposes a correlation between electron density and thermal parameters even for a light atom such as carbon, and it also underlines that in organic systems proper deconvolution of thermal motion is important for obtaining correct static electron densities....
Multipole plasmons and their disappearance in few-nanometre silver nanoparticles
DEFF Research Database (Denmark)
Raza, Søren; Kadkhodazadeh, Shima; Christensen, Thomas
2015-01-01
Electron energy-loss spectroscopy can be used for detailed spatial and spectral characterization of optical excitations in metal nanoparticles. In previous electron energy-loss experiments on silver nanoparticles with radii smaller than 20 nm, only the dipolar surface plasmon resonance was assumed...... theoretical predictions. Unlike in optical spectra, multipole surface plasmons are important in electron energy-loss spectra even of ultrasmall metallic nanoparticles....
Burt, E. A.; Taghavi-Larigani, S.; Prestage, J. D.; Tjoelker, R. L.
2009-04-01
We have developed a compensated multi-pole Linear Ion Trap Standard (LITS) that eliminates nearly all frequency sensitivity to residual ion number variations. When operated with 199Hg+, this trapped ion clock has recently demonstrated extremely good stability over a 9-month period. The short-term stability has been measured at 5 × 10-14/τ1/2 and an upper limit on long-term fractional frequency deviations of REFID="9789812838223_0037FN001">
The Polarizable Atomic Multipole-based AMOEBA Force Field for Proteins.
Shi, Yue; Xia, Zhen; Zhang, Jiajing; Best, Robert; Wu, Chuanjie; Ponder, Jay W; Ren, Pengyu
2013-01-01
Development of the AMOEBA (Atomic Multipole Optimized Energetics for Biomolecular Simulation) force field for proteins is presented. The current version (AMOEBA-2013) utilizes permanent electrostatic multipole moments through the quadrupole at each atom, and explicitly treats polarization effects in various chemical and physical environments. The atomic multipole electrostatic parameters for each amino acid residue type are derived from high-level gas phase quantum mechanical calculations via a consistent and extensible protocol. Molecular polarizability is modeled via a Thole-style damped interactive induction model based upon distributed atomic polarizabilities. Inter- and intramolecular polarization is treated in a consistent fashion via the Thole model. The intramolecular polarization model ensures transferability of electrostatic parameters among different conformations, as demonstrated by the agreement between QM and AMOEBA electrostatic potentials, and dipole moments of dipeptides. The backbone and side chain torsional parameters were determined by comparing to gas-phase QM (RI-TRIM MP2/CBS) conformational energies of dipeptides and to statistical distributions from the Protein Data Bank. Molecular dynamics simulations are reported for short peptides in explicit water to examine their conformational properties in solution. Overall the calculated conformational free energies and J-coupling constants are consistent with PDB statistics and experimental NMR results, respectively. In addition, the experimental crystal structures of a number of proteins are well maintained during molecular dynamics (MD) simulation. While further calculations are necessary to fully validate the force field, initial results suggest the AMOEBA polarizable multipole force field is able to describe the structure and energetics of peptides and proteins, in both gas-phase and solution environments.
High-order multipole radiation from quantum Hall states in Dirac materials
Gullans, Michael J.; Taylor, Jacob M.; Imamoǧlu, Ataç; Ghaemi, Pouyan; Hafezi, Mohammad
2017-06-01
We investigate the optical response of strongly disordered quantum Hall states in two-dimensional Dirac materials and find qualitatively different effects in the radiation properties of the bulk versus the edge. We show that the far-field radiation from the edge is characterized by large multipole moments (>50 ) due to the efficient transfer of angular momentum from the electrons into the scattered light. The maximum multipole transition moment is a direct measure of the coherence length of the edge states. Accessing these multipole transitions would provide new tools for optical spectroscopy and control of quantum Hall edge states. On the other hand, the far-field radiation from the bulk appears as random dipole emission with spectral properties that vary with the local disorder potential. We determine the conditions under which this bulk radiation can be used to image the disorder landscape. Such optical measurements can probe submicron-length scales over large areas and provide complementary information to scanning probe techniques. Spatially resolving this bulk radiation would serve as a novel probe of the percolation transition near half filling.
A Dialogue of Multipoles: Matched Asymptotic Expansion for Caged Black Holes
Gorbonos, Dan; Gorbonos, Dan; Kol, Barak
2004-01-01
No analytic solution is known to date for a black hole in a compact dimension. We develop an analytic perturbation theory where the small parameter is the size of the black hole relative to the size of the compact dimension. We set up a general procedure for an arbitrary order in the perturbation series based on an asymptotic matched expansion between two coordinate patches: the near horizon zone and the asymptotic zone. The procedure is ordinary perturbation expansion in each zone, where additionally some boundary data comes from the other zone, and so the procedure alternates between the zones. It can be viewed as a dialogue of multipoles where the black hole changes its shape (mass multipoles) in response to the field (multipoles) created by its periodic "mirrors", and that in turn changes its field and so on. We present the leading correction to the full metric including the first correction to the area-temperature relation, the leading term for black hole eccentricity and the "Archimedes effect". The nex...
A Dialogue of Multipoles: Matched Asymptotic Expansion for Caged Black Holes
Gorbonos, Dan; Kol, Barak
2004-06-01
No analytic solution is known to date for a black hole in a compact dimension. We develop an analytic perturbation theory where the small parameter is the size of the black hole relative to the size of the compact dimension. We set up a general procedure for an arbitrary order in the perturbation series based on an asymptotic matched expansion between two coordinate patches: the near horizon zone and the asymptotic zone. The procedure is ordinary perturbation expansion in each zone, where additionally some boundary data comes from the other zone, and so the procedure alternates between the zones. It can be viewed as a dialogue of multipoles where the black hole changes its shape (mass multipoles) in response to the field (multipoles) created by its periodic ``mirrors'', and that in turn changes its field and so on. We present the leading correction to the full metric including the first correction to the area-temperature relation, the leading term for black hole eccentricity and the ``Archimedes effect''. The next order corrections will appear in a sequel. On the way we determine independently the static perturbations of the Schwarzschild black hole in dimension d geq 5, where the system of equations can be reduced to ``a master equation'' — a single ordinary differential equation. The solutions are hypergeometric functions which in some cases reduce to polynomials.
Gniewek, Piotr
2016-01-01
The conventional surface integral formula $J_{\\rm surf}[\\Phi]$ and an alternative volume integral formula $J_{\\rm var}[\\Phi]$ are used to compute the asymptotic exchange splitting of the interaction energy of the hydrogen atom and a proton employing the primitive function $\\Phi$ in the form of its truncated multipole expansion. Closed-form formulas are obtained for the asymptotics of $J_{\\rm surf}[\\Phi_N]$ and $J_{\\rm var}[\\Phi_N]$, where $\\Phi_N$ is the multipole expansion of $\\Phi$ truncated after the $1/R^N$ term, $R$ being the internuclear separation. It is shown that the obtained sequences of approximations converge to the exact results with the rate corresponding to the convergence radius equal to 2 and 4 when the surface and the volume integral formulas are used, respectively. When the multipole expansion of a truncated, $K$th order polarization function is used to approximate the primitive function the convergence radius becomes equal to unity in the case of $J_{\\textrm{var}}[\\Phi]$. At low order the ...
Application of EEG multipole model in the diagnosis of Alzheimer's disease
Institute of Scientific and Technical Information of China (English)
无
2008-01-01
In order to find the electroencephalogram (EEG) characteristic parameters typical of Alzheimer's disease (AD) and explore an effective diagnostic method, a new mobile current multipole model was proposed to simulate the AD patient's cortical dipole source activities.The indicators of goodness of fit (GOF) and DtononD (DD) were calculated from EEG samples to evaluate the performance of this model. Relevant results showed that this multipole model with higher GOF values and larger DD change well fitted the pathological electrical activities of cortical neurons aroused by AD's extended sulcus and gyrus in the cerebral cortex. Meanwhile, the products of DD mean & standard variance were found in a clear linear correlation with the diagnostic data of mini-mental state examination (MMSE) used in AD clinics. Furthermore, by tracing this multipole model's indicators in typical patients and contrasting with the functional magnetic resonance image (fMRI) as AD progressed, we suggested that the DD index may be suitable for monitoring the AD developments as a new diagnostic parameter.
Bashful ballerina unveiled: Multipole analysis of the coronal magnetic field
Virtanen, I.; Mursula, K.
2012-12-01
Heliospheric current sheet (HCS) is the continuum of the coronal magnetic equator, dividing the heliospheric magnetic field (HMF) into two sectors (polarities). Because of its wavy structure, the HCS is often called the ballerina skirt. Several studies have proven that the HCS is southward shifted during about three years in the solar declining phase. This persistent phenomenon, called the bashful ballerina, has been verified by geomagnetic indices since 1930s, by OMNI data base since 1960s, by the WSO PFSS model since mid-1970s and by the Ulysses probe measurements during the fast latitude scans in 1994-1995 and 2007. We study here the Wilcox Solar Observatory measurements of the photospheric magnetic field and the PFSS extrapolation of the coronal magnetic field. We show that the quadrupole moment of the photospheric magnetic field, which is important for the HCS asymmetry (bashful ballerina), mainly arises from the difference between northern and southern polar field strengths. According to the WSO data the minimum time quadrupole is mainly due to the difference between the highest northern and southern latitude bins. Related studies imply that the southward shift of the HCS is related to the delayed development of southern coronal holes. We also discuss the suggested connection of the HCS asymmetry to sunspot hemispheric asymmetry.
Couch, Sean M.; Graziani, Carlo; Flocke, Norbert
2013-12-01
Self-gravity computation by multipole expansion is a common approach in problems such as core-collapse and Type Ia supernovae, where single large condensations of mass must be treated. The standard formulation of multipole self-gravity in arbitrary coordinate systems suffers from two significant sources of error, which we correct in the formulation presented in this article. The first source of error is due to the numerical approximation that effectively places grid cell mass at the central point of the cell, then computes the gravitational potential at that point, resulting in a convergence failure of the multipole expansion. We describe a new scheme that avoids this problem by computing gravitational potential at cell faces. The second source of error is due to sub-optimal choice of location for the expansion center, which results in angular power at high multipole l values in the gravitational field, requiring a high—and expensive—value of multipole cutoff l max. By introducing a global measure of angular power in the gravitational field, we show that the optimal coordinate for the expansion is the square-density-weighted mean location. We subject our new multipole self-gravity algorithm, implemented in the FLASH simulation framework, to two rigorous test problems: MacLaurin spheroids for which exact analytic solutions are known, and core-collapse supernovae. We show that key observables of the core-collapse simulations, particularly shock expansion, proto-neutron star motion, and momentum conservation, are extremely sensitive to the accuracy of the multipole gravity, and the accuracy of their computation is greatly improved by our reformulated solver.
Gray, Morgan; Rodionov, Sergey; Bocquet, Marc; Bertino, Laurent; Ferrari, Marc; Fusco, Thierry
2014-01-01
We propose a new algorithm for an adaptive optics system control law, based on the Linear Quadratic Gaussian approach and a Kalman Filter adaptation with localizations. It allows to handle non-stationary behaviors, to obtain performance close to the optimality defined with the residual phase variance minimization criterion, and to reduce the computational burden with an intrinsically parallel implementation on the Extremely Large Telescopes (ELTs).
Couch, Sean M; Flocke, Norbert
2013-01-01
Self-gravity computation by multipole expansion is a common approach in problems such as core-collapse and Type Ia supernovae, where single large condensations of mass must be treated. The standard formulation of multipole self-gravity suffers from two significant sources of error, which we correct in the formulation presented in this article. The first source of error is due to the numerical approximation that effectively places grid cell mass at the central point of the cell, then computes the gravitational potential at that point, resulting in a convergence failure of the multipole expansion. We describe a new scheme that avoids this problem by computing gravitational potential at cell faces. The second source of error is due to sub-optimal choice of location for the expansion center, which results in angular power at high multipole $l$ values in the gravitational field, requiring a high --- and expensive --- value of multipole cutoff \\lmax. By introducing a global measure of angular power in the gravitati...
Castro, H; Pomar, C A; Picó, C; Sánchez, J; Palou, A
2015-03-01
We analyzed the effects of a short exposure to a cafeteria diet during early infancy in rats on their metabolic response to fed/fasting conditions in key tissues involved in energy homeostasis. Ten-day-old male pups were fed a control or a cafeteria diet for 12 days and then killed under ad libitum feeding conditions or 12 h fasting. The expression of key genes related to energy metabolism in liver, retroperitoneal white adipose tissue (WAT) and hypothalamus were analyzed. Despite no differences in body weight, cafeteria-fed animals had almost double the fat mass of control rats. They also showed higher food intake, higher leptinemia and altered hypothalamic expression of Neuropetide Y, suggesting a dysfunction in the control of food intake. Unlike controls, cafeteria-fed animals did not decrease WAT expression of Pparg, sterol regulatory element binding transcription factor 1 or Cidea under fasting conditions, and displayed lower Pnpla2 expression than controls. In liver, compared with controls, cafeteria animals presented: (i) lower expression of genes related with fatty acid uptake and lipogenesis under ad libitum-fed conditions; (ii) higher expression of fatty acid oxidation-related genes and glucokinase under fasting conditions; (iii) greater expression of leptin and insulin receptors; and higher protein levels of insulin receptor and the pAMPK/AMPK ratio. A short period of exposure to a cafeteria diet in early infancy in rat pups is enough to disturb the metabolic response to fed/fasting conditions in key tissues involved in energy homeostasis, particularly in WAT, and hence induces an exacerbated body fat accumulation and increased metabolic risk, with no apparent effects on body weight.
Point charges optimally placed to represent the multipole expansion of charge distributions.
Directory of Open Access Journals (Sweden)
Ramu Anandakrishnan
Full Text Available We propose an approach for approximating electrostatic charge distributions with a small number of point charges to optimally represent the original charge distribution. By construction, the proposed optimal point charge approximation (OPCA retains many of the useful properties of point multipole expansion, including the same far-field asymptotic behavior of the approximate potential. A general framework for numerically computing OPCA, for any given number of approximating charges, is described. We then derive a 2-charge practical point charge approximation, PPCA, which approximates the 2-charge OPCA via closed form analytical expressions, and test the PPCA on a set of charge distributions relevant to biomolecular modeling. We measure the accuracy of the new approximations as the RMS error in the electrostatic potential relative to that produced by the original charge distribution, at a distance 2x the extent of the charge distribution--the mid-field. The error for the 2-charge PPCA is found to be on average 23% smaller than that of optimally placed point dipole approximation, and comparable to that of the point quadrupole approximation. The standard deviation in RMS error for the 2-charge PPCA is 53% lower than that of the optimal point dipole approximation, and comparable to that of the point quadrupole approximation. We also calculate the 3-charge OPCA for representing the gas phase quantum mechanical charge distribution of a water molecule. The electrostatic potential calculated by the 3-charge OPCA for water, in the mid-field (2.8 Å from the oxygen atom, is on average 33.3% more accurate than the potential due to the point multipole expansion up to the octupole order. Compared to a 3 point charge approximation in which the charges are placed on the atom centers, the 3-charge OPCA is seven times more accurate, by RMS error. The maximum error at the oxygen-Na distance (2.23 Å is half that of the point multipole expansion up to the octupole
Self-Consistent Description of Multipole Strength in Exotic Nuclei I: Method
Terasaki, J; Bender, M; Dobaczewski, J; Nazarewicz, W; Stoitsov, M V
2004-01-01
We use the canonical Hartree-Fock-Bogoliubov basis to implement a completely self-consistent quasiparticle-random-phase approximation with arbitrary Skyrme energy density functionals and density-dependent pairing functionals. The point of the approach is to accurately describe multipole strength functions in spherical even-even nuclei, including weakly-bound drip-line systems. We describe the method and carefully test its accuracy, particularly in handling spurious modes. To illustrate our approach, we calculate isoscalar and isovector monopole, dipole, and quadrupole strength functions in several Sn isotopes, both in the stable region and at the drip lines.
Enhancing monochromatic multipole emission by a subwavelength enclosure of degenerate Mie resonances
Zhao, Jiajun
2017-07-06
Sound emission is inefficient at low frequencies as limited by source size. This letter presents enhancing emission of monochromatic monopole and multipole sources by enclosing the source with a subwavelength circular enclosure filled of an anisotropic material of a low radial sound speed. The anisotropy is associated with an infinite tangential density along the azimuth. Numerical simulations show that emission gain is produced at frequencies surrounding degenerate Mie resonant frequencies of the enclosure, and meanwhile the radiation directivity pattern is well preserved. The degeneracy is theoretically analyzed. A realization of the material is suggested by using a space-coiling structure.
Chremmos, Ioannis; Giamalaki, Melpomeni; Yannopapas, Vassilios; Paspalakis, Emmanuel
2014-01-01
We present a formulation for deriving effective medium properties of infinitely periodic two-dimensional metamaterial lattice structures beyond the static and quasi-static limits. We utilize the multipole expansions, where the polarization currents associated with the supported Bloch modes are expressed via the electric dipole, magnetic dipole, and electric quadrupole moments per unit length. We then propose a method to calculate the Bloch modes based on the lattice geometry and individual unit element structure. The results revert to well-known formulas in the quasistatic limit and are useful for the homogenization of nanorod-type metamaterials which are frequently used in optical applications.
Plasma confinement time in trimix-M galatea multipole magnetic trap
Bishaev, A. M.; Bugrova, A. I.; Kozintseva, M. V.; Lipatov, A. S.; Sigov, A. S.; Kharchevnikov, V. K.
2010-05-01
The confinement time of hydrogen plasma trapped in a Trimix-M magnetic multipole galatea was studied in a range of plasma densities (1 × 1016 - 6 × 1018 m-3) and ion energies (˜100-300 eV). It is established that (i) the confinement time increases with decreasing plasma density in the trap and (ii) as the barrier magnetic field is increased, the plasma confinement time grows faster than according to a linear law. The obtained results are indicative of a collisional character of plasma diffusion through the barrier field in the trap.
Kinjo, Ryota; Kagamihata, Akihiro; Seike, Takamitsu; Kishimoto, Hikaru; Ohashi, Haruhiko; Yamamoto, Shigeru; Tanaka, Takashi
2017-07-01
A lightweight-compact variable-gap undulator (LCVGU) having the force-cancellation system based on the multipole monolithic magnets (MMMs) has been developed. The LCVGU is free from the heavy mechanical frames, which is a fundamental element specific to conventional variable-gap undulators (VGUs) because of a strong attractive force, and thus the cost and time for construction and installation are expected to be significantly reduced; the MMMs counteract the strong attractive force in a cost-effective manner. Results of mechanical tests and magnetic-field measurements of two prototype LCVGUs equipped with the proposed force cancellation system have revealed the comparable performance with the conventional VGUs.
Institute of Scientific and Technical Information of China (English)
钱鹏江; 王士同; 邓赵红
2011-01-01
相似度聚类方法(Similarity-based clustering method,SCM)因其简单易实现和具有鲁棒性而广受关注.但由于内含相似度聚类算法(Similarity clustering algorithm,SCA)的高时间复杂度和凝聚型层次聚类(Agglomerative hierarchicalclustering,AHC)的高空间复杂度,SCM不适用大数据集场合.本文首先发现了 SCM和核密度估计问题的本质联系,并以此入手,通过快速压缩集密度估计器(Fast reduced set density estimator,FRSDE)和基于图的松弛聚类(Graph-based relaxed clustering,GRC)算法提出了快速自适应相似度聚类方法(Fast adaptive similarity-based clustering method,FASCM).相比于原SCM,该方法的主要优点是:1)其总体渐近时间复杂度与样本容量呈线性关系;2)不依赖于人工经验的干预,具有了自适应性.由此,FASCM适用于大数据集环境.该方法的有效性在图像分割应用中进行了验证.%Similarity-based clustering method (SCM) has received much attention because it is robust and can be implemented simply and easily.However, because of its high time complexity of the embedded similarity clustering algorithm (SCA) and high space complexity of the embedded agglomerative hierarchical clustering (AHC), SCM is impractical for large data sets.In this paper, the relationship is revealed between SCM and the kernel density estimation of samples, a novel fast adaptive similarity-based clustering method (FASCM) is accordingly proposed by adopting fast reduced set density estimator (FRSDE) and graph-based relaxed clustering (GRC).The distinctive advantages of FMSSC over MSSC exist in: 1) its asymptotic linear time complexity with the data size; 2) independent on artificial experience and its adaptability.Thus, FASCM is practical for large datasets.Its effectiveness has also been demonstrated in image segmentation examples.
Fast Parallel Particle Methods: Angstroms to Gigaparsecs
Warren, Michael
2006-03-01
Fast multipole methods have become an ubiquitous tool for the simulation of physical systems with long-range interactions. Since their introduction they have been applied to a vast range of problems. Our own parallel hashed oct-tree code (HOT) has been applied to a number of physical systems with long-range interactions, including gravitational and smoothed particle hydrodynamic interactions in astrophysical systems, fluid flows with vortex-particle methods, electromagnetic scattering and aerodynamics. Several these simulations were recognized with Gordon Bell prizes for significant achievement in parallel processing. We will discuss some recent work which used a series of 1-billion particle dark matter simulations to accurately determine the mass function of galaxy halos. These simulations required over 4x10^18 floating point operations (4 exaflops). Another focus of our current research is extending the HOT framework to biological systems, with the goal of simulating systems using over ten times as many atoms as the current state-of-the-art. This requires addressing several issues with current multipole algorithms, such as spatially-correlated errors and the ability to handle disparate time scales efficiently.
Institute of Scientific and Technical Information of China (English)
BAI Sha; P. Bambade; WANG Dou; GAO Jie; M. Woodley; M. Masuzawa
2012-01-01
The ATF2 project is the final focus system prototype for the ILC and CLIC linear collider projects,with the purpose of reaching a 37nm vertical beam size at the interaction point.In the nanometer beam size regime,higher order multipoles in magnets become a crucial point for consideration.The strength and rotation angle of the ATF2 QEA magnets were reconstructed from the IHEP measurements and compared with the KEK ones to be identical.Based on the study of the skew multipoles sensitivity,we report on the analysis of the possible mitigation of the measured multipoles.A suggestion is given which will benefit the ATF2 present commissioning to reach the goal beam size,and also the reduced β optics in future.
Szmytkowski, Radosław; Łukasik, Grzegorz
2016-09-01
We present tabulated data for several families of static electric and magnetic multipole susceptibilities for hydrogenic atoms with nuclear charge numbers from the range 1 ⩽ Z ⩽ 137. Atomic nuclei are assumed to be point-like and spinless. The susceptibilities considered include the multipole electric polarizabilities α E L → E L and magnetizabilities (magnetic susceptibilities) χ M L → M L with 1 ⩽ L ⩽ 4 (i.e., the dipole, quadrupole, octupole and hexadecapole ones), the electric-to-magnetic cross-susceptibilities α E L → M(L - 1) with 2 ⩽ L ⩽ 5 and α E L → M(L + 1) with 1 ⩽ L ⩽ 4, the magnetic-to-electric cross-susceptibilities χ M L → E(L - 1) with 2 ⩽ L ⩽ 5 and χ M L → E(L + 1) with 1 ⩽ L ⩽ 4 (it holds that χ M L → E(L ∓ 1) =α E(L ∓ 1) → M L), and the electric-to-toroidal-magnetic cross-susceptibilities α E L → T L with 1 ⩽ L ⩽ 4. Numerical values are computed from general exact analytical formulas, derived by us elsewhere within the framework of the Dirac relativistic quantum mechanics, and involving generalized hypergeometric functions 3F2 of the unit argument.
Multipole Theory in Electromagnetism: Classical, Quantum and Symmetry Aspects, with Applications
Energy Technology Data Exchange (ETDEWEB)
Sihvola, Ari [Helsinki University of Technology (Finland)
2005-03-11
'Good reasons must, of force, give place to better', observes Brutus to Cassius, according to William Shakespeare in Julius Caesar. Roger Raab and Owen de Lange seem to agree, as they cite this sentence in the concluding chapter of their new book on the importance of exact multipole analysis in macroscopic electromagnetics. Very true and essential to remember in our daily research work. The two scientists from the University of Natal in Pietermaritzburg, South Africa (presently University of KwaZulu-Natal) have been working for a very long time on the accurate description of electric and magnetic response of matter and have published much of their findings in various physics journals. The present book gives us a clear and coherent exposition of many of these results. The important message of Raab and de Lange is that in the macroscopic description of matter, a correct balance between the various orders of electric and magnetic multipole terms has to be respected. If the inclusion of magnetic dipole terms is not complemented with electric quadrupoles, there is a risk of losing the translational invariance of certain important quantities. This means that the values of these quantities depend on the choice of the origin{exclamation_point} 'It can't be Nature, for it is not sense' is another of the apt literary citations in the book. Often monographs written by researchers look like they have been produced using a cut-and-paste technique; earlier published articles are included in the same book but, unfortunately, too little additional effort is expended into moulding the totality into a unified story. This is not the case with Raab and de Lange. The structure and the text flow of the book serve perfectly its important message. After the obligatory introduction of material response to electromagnetic fields, constitutive relations, basic quantum theory and spacetime properties, a chapter follows with transmission and scattering effects where
Multipole and field uniformity tailoring of a 750 MHz rf dipole
Energy Technology Data Exchange (ETDEWEB)
Delayen, Jean R. [JLAB, Old Dominion University; Castillo, Alejandro [JLAB, Old Dominion University
2014-12-01
In recent years great interest has been shown in developing rf structures for beam separation, correction of geometrical degradation on luminosity, and diagnostic applications in both lepton and hadron machines. The rf dipole being a very promising one among all of them. The rf dipole has been tested and proven to have attractive properties that include high shunt impedance, low and balance surface fields, absence of lower order modes and far-spaced higher order modes that simplify their damping scheme. As well as to be a compact and versatile design in a considerable range of frequencies, its fairly simple geometry dependency is suitable both for fabrication and surface treatment. The rf dipole geometry can also be optimized for lowering multipacting risk and multipole tailoring to meet machine specific field uniformity tolerances. In the present work a survey of field uniformities, and multipole contents for a set of 750 MHz rf dipole designs is presented as both a qualitative and quantitative analysis of the inherent flexibility of the structure and its limitations.
Sihvola, Ari
2005-03-01
`Good reasons must, of force, give place to better', observes Brutus to Cassius, according to William Shakespeare in Julius Caesar. Roger Raab and Owen de Lange seem to agree, as they cite this sentence in the concluding chapter of their new book on the importance of exact multipole analysis in macroscopic electromagnetics. Very true and essential to remember in our daily research work. The two scientists from the University of Natal in Pietermaritzburg, South Africa (presently University of KwaZulu-Natal) have been working for a very long time on the accurate description of electric and magnetic response of matter and have published much of their findings in various physics journals. The present book gives us a clear and coherent exposition of many of these results. The important message of Raab and de Lange is that in the macroscopic description of matter, a correct balance between the various orders of electric and magnetic multipole terms has to be respected. If the inclusion of magnetic dipole terms is not complemented with electric quadrupoles, there is a risk of losing the translational invariance of certain important quantities. This means that the values of these quantities depend on the choice of the origin! `It canÂ't be Nature, for it is not sense' is another of the apt literary citations in the book. Often monographs written by researchers look like they have been produced using a cut-and-paste technique; earlier published articles are included in the same book but, unfortunately, too little additional effort is expended into moulding the totality into a unified story. This is not the case with Raab and de Lange. The structure and the text flow of the book serve perfectly its important message. After the obligatory introduction of material response to electromagnetic fields, constitutive relations, basic quantum theory and spacetime properties, a chapter follows with transmission and scattering effects where everything seems to work well with the `old
Pyzer-Knapp, Edward O.; Thompson, Hugh P. G.; Day, Graeme M.
2016-01-01
We present a re-parameterization of a popular intermolecular force field for describing intermolecular interactions in the organic solid state. Specifically we optimize the performance of the exp-6 force field when used in conjunction with atomic multipole electrostatics. We also parameterize force fields that are optimized for use with multipoles derived from polarized molecular electron densities, to account for induction effects in molecular crystals. Parameterization is performed against a set of 186 experimentally determined, low-temperature crystal structures and 53 measured sublimation enthalpies of hydrogen-bonding organic molecules. The resulting force fields are tested on a validation set of 129 crystal structures and show improved reproduction of the structures and lattice energies of a range of organic molecular crystals compared with the original force field with atomic partial charge electrostatics. Unit-cell dimensions of the validation set are typically reproduced to within 3% with the re-parameterized force fields. Lattice energies, which were all included during parameterization, are systematically underestimated when compared with measured sublimation enthalpies, with mean absolute errors of between 7.4 and 9.0%. PMID:27484370
Local geometry of electromagnetic fields and its role in molecular multipole transitions.
Yang, Nan; Cohen, Adam E
2011-05-12
Electromagnetic fields with complex spatial variation routinely arise in Nature. We study the response of a small molecule to monochromatic fields of arbitrary three-dimensional geometry. First, we consider the allowed configurations of the fields and field gradients at a single point in space. Many configurations cannot be generated from a single plane wave, regardless of polarization, but any allowed configuration can be generated by superposition of multiple plane waves. There is no local configuration of the fields and gradients that requires near-field effects. Second, we derive a set of local electromagnetic quantities, each of which couples to a particular multipole transition. These quantities are small or zero in plane waves, but can be large in regions of certain superpositions of plane waves. Our findings provide a systematic framework for designing far-field and near-field experiments to drive multipole transitions. The proposed experiments provide information on molecular structure that is inaccessible to other spectroscopic techniques and open the possibility for new types of optical control of molecules.
Werner, Hans-Joachim
2016-11-01
The accuracy of multipole approximations for distant pair energies in local second-order Møller-Plesset perturbation theory (LMP2) as introduced by Hetzer et al. [Chem. Phys. Lett. 290, 143 (1998)] is investigated for three chemical reactions involving molecules with up to 92 atoms. Various iterative and non-iterative approaches are compared, using different energy thresholds for distant pair selection. It is demonstrated that the simple non-iterative dipole-dipole approximation, which has been used in several recent pair natural orbitals (PNO)-LMP2 and PNO-LCCSD (local coupled-cluster with singles and doubles) methods, may underestimate the distant pair energies by up to 50% and can lead to significant errors in relative energies, unless very tight thresholds are used. The accuracy can be much improved by including higher multipole orders and by optimizing the distant pair amplitudes iteratively along with all other amplitudes. A new approach is presented in which very small special PNO domains for distant pairs are used in the iterative approach. This reduces the number of distant pair amplitudes by 3 orders of magnitude and keeps the additional computational effort for the iterative optimization of distant pair amplitudes minimal.
Putman, Charles T; Gallo, Maria; Martins, Karen J B; MacLean, Ian M; Jendral, Michelle J; Gordon, Tessa; Syrotuik, Daniel G; Dixon, Walter T
2015-07-01
This study tested the hypothesis that elevating the intracellular phosphorylation potential (IPP = [ATP]/[ADP]free) within rat fast-twitch tibialis anterior muscles by creatine (Cr) loading would prevent fast-to-slow fibre transitions induced by chronic low-frequency electrical stimulation (CLFS, 10 Hz, 12 h/day). Creatine-control and creatine-CLFS groups drank a solution of 1% Cr + 5% dextrose, ad libitum, for 10 days before and during 10 days of CLFS; dextrose-control and dextrose-CLFS groups drank 5% dextrose. Cr loading increased total Cr (P creatine-CLFS than in dextrose-CLFS. Higher IPP was confirmed by a 58% reduction in phospho-AMP-activated protein kinase α (Thr172) (P creatine-CLFS, MyHC-I and MyHC-IIa mRNA were unchanged and MyHC-IIb mRNA decreased by 75% (P creatine-CLFS, but reciprocal reductions in glycolytic reference enzymes occurred only in dextrose-CLFS (P creatine-CLFS coincided with prolonged time to peak tension and half-rise time (P < 0.01). These results highlight the IPP as an important physiological regulator of muscle fibre plasticity and demonstrate that training-induced changes typically associated with improvements in muscular endurance or increased power output are not mutually exclusive in Cr-loaded muscles.
Fasting and sport: an introduction.
Maughan, R J
2010-06-01
Most humans observe an overnight fast on a daily basis, and the human body copes well with short duration fasting. Periodic fasting is widely practised for cultural, religious or health reasons. Fasting may take many different forms. Prolonged restriction of food and fluid is harmful to health and performance, and it is often automatically assumed that intermittent fasting will lead to decrements in exercise performance. Athletes who choose to fast during training or competitions may therefore be at a disadvantage. The available evidence does not entirely support this view, but there is little or no information on the effects on elite athletes competing in challenging environments. Prolonged periods of training in the fasted state may not allow optimum adaptation of muscles and other tissues. Further research on a wide range of athletes with special nutrition needs is urgently required. In events where performance might be affected, other strategies to eliminate or minimise any effects must be sought.
Yücel, Abdulkadir C.
2013-07-01
Reliable and effective wireless communication and tracking systems in mine environments are key to ensure miners\\' productivity and safety during routine operations and catastrophic events. The design of such systems greatly benefits from simulation tools capable of analyzing electromagnetic (EM) wave propagation in long mine tunnels and large mine galleries. Existing simulation tools for analyzing EM wave propagation in such environments employ modal decompositions (Emslie et. al., IEEE Trans. Antennas Propag., 23, 192-205, 1975), ray-tracing techniques (Zhang, IEEE Tran. Vehic. Tech., 5, 1308-1314, 2003), and full wave methods. Modal approaches and ray-tracing techniques cannot accurately account for the presence of miners and their equipments, as well as wall roughness (especially when the latter is comparable to the wavelength). Full-wave methods do not suffer from such restrictions but require prohibitively large computational resources. To partially alleviate this computational burden, a 2D integral equation-based domain decomposition technique has recently been proposed (Bakir et. al., in Proc. IEEE Int. Symp. APS, 1-2, 8-14 July 2012). © 2013 IEEE.
Jansen, Thomas L. C.
2014-01-01
The effect of solvent polarizability and multipole effects on the amide I vibrational spectra of a peptide unit is investigated. Four molecular dynamics force fields of increasing complexity for the solvent are used to model both the linear absorption and two-dimensional infrared spectra. It is obse
DEFF Research Database (Denmark)
Khanal, Prabhat; Husted, Sanne Vinter; Axel, Anne Marie Dixen;
2014-01-01
of subcutaneous adipose tissue and induced differential physiological adaptations to fasting. This study does not suggest that exposure to gestational overnutrition will provide a protective effect against development of hyperglycaemia later in life. © 2013 Scandinavian Physiological Society.......Aim: To investigate if late gestation under- or overnutrition has similar adverse impacts on visceral adiposity, metabolic and endocrine function in sheep, and if subsequent exposure to a high-fat diet in early post-natal life exaggerates the prenatal programming outcomes later in life. Methods......, cholesterol, non-esterified fatty acids, triglyceride and lactate combined with abdominal obesity. Peri-renal fat appeared to be a particular target of a high-fat diet post-natally. Conclusion: Both prenatal under- and overnutrition predisposed for abdominal adiposity, apparently by reducing the expandability...
Directory of Open Access Journals (Sweden)
Anesa Maolod Omar Al-Najeh
2012-07-01
Full Text Available The packet loss has become an important issue to the research community, which needs to be addressed. In FMIPv6, Packet losses are significantly related to the handover latency and buffer size used for packet buffering. In the case of increased handover latency or decreased buffer size, packet losses will be increased. To solve the problem, we propose an adaptive packet buffering (APT algorithm based on priority of packets and traffic throughput in layer 3 (L3 were the packets are buffered by the predefined rule in the new access point during handover. This algorithm is designed to reduce packet loss in FMIPv6 and high level of throughput and low delay can be achieved through the proposed technique. To achieve a fair comparison with Adaptive Buffer Limit Tuning (ALT algorithm, we have implemented the APT algorithm in Omnet++ along with the FMIPv6 to develop the model and the algorithm. The results of the simulation study show that the proposed algorithm can reduce the packet loss as well as the delay.
Directory of Open Access Journals (Sweden)
Brad Thomas Townsley
2015-05-01
Full Text Available Next Generation Sequencing (NGS is driving rapid advancement in biological understanding and RNA-sequencing (RNA-seq has become an indispensable tool for biology and medicine. There is a growing need for access to these technologies although preparation of NGS libraries remains a bottleneck to wider adoption. Here we report a novel method for the production of strand specific RNA-seq libraries utilizing inherent properties of double-stranded cDNA to capture and incorporate a sequencing adapter. Breath Adapter Directional sequencing (BrAD-seq reduces sample handling and requires far fewer enzymatic steps than most available methods to produce high quality strand-specific RNA-seq libraries. The method we present is optimized for 3-prime Digital Gene Expression (DGE libraries and can easily extend to full transcript coverage shotgun (SHO type strand-specific libraries and is modularized to accommodate a diversity of RNA and DNA input materials. BrAD-seq offers a highly streamlined and inexpensive option for RNA-seq libraries.
Energy Technology Data Exchange (ETDEWEB)
Hu, Y. [Mayo Clinic Arizona (United States)
2015-06-15
MRI-guided treatment is a growing area of medicine, particularly in radiotherapy and surgery. The exquisite soft tissue anatomic contrast offered by MRI, along with functional imaging, makes the use of MRI during therapeutic procedures very attractive. Challenging the utility of MRI in the therapy room are many issues including the physics of MRI and the impact on the environment and therapeutic instruments, the impact of the room and instruments on the MRI; safety, space, design and cost. In this session, the applications and challenges of MRI-guided treatment will be described. The session format is: Past, present and future: MRI-guided radiotherapy from 2005 to 2025: Jan Lagendijk Battling Maxwell’s equations: Physics challenges and solutions for hybrid MRI systems: Paul Keall I want it now!: Advances in MRI acquisition, reconstruction and the use of priors to enable fast anatomic and physiologic imaging to inform guidance and adaptation decisions: Yanle Hu MR in the OR: The growth and applications of MRI for interventional radiology and surgery: Rebecca Fahrig Learning Objectives: To understand the history and trajectory of MRI-guided radiotherapy To understand the challenges of integrating MR imaging systems with linear accelerators To understand the latest in fast MRI methods to enable the visualisation of anatomy and physiology on radiotherapy treatment timescales To understand the growing role and challenges of MRI for image-guided surgical procedures My disclosures are publicly available and updated at: http://sydney.edu.au/medicine/radiation-physics/about-us/disclosures.php.
Ciapaite, Jolita; van den Berg, Sjoerd A; Houten, Sander M; Nicolay, Klaas; van Dijk, Ko Willems; Jeneson, Jeroen A
2015-02-01
High-fat diets (HFDs) have been shown to interfere with skeletal muscle energy metabolism and cause peripheral insulin resistance. However, understanding of HFD impact on skeletal muscle primary function, i.e., contractile performance, is limited. Male C57BL/6J mice were fed HFD containing lard (HFL) or palm oil (HFP), or low-fat diet (LFD) for 5weeks. Fast-twitch (FT) extensor digitorum longus (EDL) and slow-twitch (ST) soleus muscles were characterized with respect to contractile function and selected biochemical features. In FT EDL muscle, a 30%-50% increase in fatty acid (FA) content and doubling of long-chain acylcarnitine (C14-C18) content in response to HFL and HFP feeding were accompanied by increase in protein levels of peroxisome proliferator-activated receptor-γ coactivator-1α, mitochondrial oxidative phosphorylation complexes and acyl-CoA dehydrogenases involved in mitochondrial FA β-oxidation. Peak force of FT EDL twitch and tetanic contractions was unaltered, but the relaxation time (RT) of twitch contractions was 30% slower compared to LFD controls. The latter was caused by accumulation of lipid intermediates rather than changes in the expression levels of proteins involved in calcium handling. In ST soleus muscle, no evidence for lipid overload was found in any HFD group. However, particularly in HFP group, the peak force of twitch and tetanic contractions was reduced, but RT was faster than LFD controls. The latter was associated with a fast-to-slow shift in troponin T isoform expression. Taken together, these data highlight fiber-type-specific sensitivities and phenotypic adaptations to dietary lipid overload that differentially impact fast- versus slow-twitch skeletal muscle contractile function. Copyright © 2015 Elsevier Inc. All rights reserved.
Schulte, Berit; Wolz, Christiane; Schumacher, Ulrike; Beyser, Kurt; Heeg, Peter; Borgmann, Stefan
2009-01-01
Recently, it has been suspected that long durations of hospitalization might be a possible risk factor to get colonized by multiple VRE strains. Here we present the case of a patient who underwent stem cell transplantation and subsequently stayed at the hospital for about 4 months until death. At least four different Enterococcus faecium strains were identified from routinely taken microbiological specimens as demonstrated by pulsed-field gel-electrophoresis. Additionally, these strains showed variable susceptibility to quinupristine/dalfopristine, vancomycin, and/or linezolid depending on different antibiotic administrations. These findings indicate that patients might be colonized with multiple Enterococcus faecium strains and that the enterococcal flora quickly adapts due to antibiotic exposure.
Analysis and Design of Backing Beam for Multipole Wiggler (MPW14) at PLS
Lee, Hong-Gi; Jung, Young-Gyu; Park, Ki-Hyeon; Sik Han, Hong; Suck Suh, Hyung; Wha Chung, Chin; Woo Lee, Wol
2005-01-01
Pohang Accelerator Laboratory (PAL) had developed and installed a Multipole Wiggler (MPW14) to utilize high energy synchrotron radiation at Pohang Light Source (PLS). The MPW14 is a hybrid type device with period of 14 cm, minimum gap of 14 mm, maximum flux density of 2.02 Tesla and total magnetic structure length of 2056 mm. The support locations and structure of an insertion device are optimized to achieve a minimum deflection due to the magnetic loads. A Finite Element Analysis (FEA) is performed to find out the amount of maximum deflection and optimal support positions on the backing beam, the support and drive structures of the MPW14 under expected magnetic load of 14 tons. To reduce the deflection effect further, two springs are designed and installed to compensate the gap dependent magnetic loads. The optimized deflection is estimated to be about 20.6 ? while the deflection before optimization is 238 ?.
Pillet, S; Souhassou, M; Lecomte, C; Schwarz, K; Blaha, P; Rérat, M; Lichanot, A; Roversi, P
2001-05-01
This electron-density study on corundum (alpha-Al2O3) is part of the Multipole Refinement Project supported by the IUCr Commission on Charge, Spin and Momentum Densities. For this purpose, eight different data sets (two experimental and six theoretical) were chosen from which the electron density was derived by multipolar refinement (using the MOLLY program). The two experimental data sets were collected on a conventional CAD4 and at ESRF, ID11 with a CCD detector, respectively. The theoretical data sets consist of static, dynamic, static noisy and dynamic noisy moduli of structure factors calculated at the Hartree-Fock (HF) and density functional theory (DFT) levels. Comparisons of deformation and residual densities show that the multipolar analysis works satisfactorily but also indicate some drawbacks in the refinement. Some solutions and improvements during the refinements are proposed like contraction or expansion of the inner atomic shells or increasing the order of the spherical harmonic expansion.
Role of multipole moments in electric-field-induced order of dense molecular systems.
Acebal, Pablo; Carretero, Luis; Blaya, Salvador
2010-07-12
A new model is developed to describe the orientational order of dense molecular systems under an applied external electric field as a function of the n-particle distribution functions of a system under no external perturbation. From an approximation of this expression, the effects of several variables on this orientational order, such as the microscopic properties of the oriented molecules (the molecular geometry and multipole moments) and the solvent or matrix properties, are studied. The theoretical predictions show that, for a correct description of the orientational order, quadrupole and octupole moments must be included, as they play an important role in the orientational order achieved, depending on the molecular geometry. Furthermore, to verify the validity of the model, theoretical predictions are compared with experimental results, and show a good concordance.
Higher-order multipole amplitude measurement in $\\pspto\\g\\chict$
,
2011-01-01
Using $106\\times10^6$ $\\psp$ events collected with the BESIII detector at the BEPCII storage ring, the higher-order multipole amplitudes in the radiative transition $\\pspto\\g\\chictto\\g\\pp/\\g\\kk$ are measured. A fit to the $\\chict$ production and decay angular distributions yields $M2=0.046\\pm0.010\\pm0.013$ and $E3=0.015\\pm0.008\\pm0.018$, where the first errors are statistical and the second systematic. Here $M2$ denotes the normalized magnetic quadrupole amplitude and $E3$ the normalized electric octupole amplitude. This measurement shows evidence for the existence of the $M2$ signal with $4.4\\sigma$ statistical significance and is consistent with the charm quark having no anomalous magnetic moment.
Mihalcea, Bogdan M; Stan, Cristina; Visan, Gina T; Ganciu, Mihai; Filinov, Vladimir E; Lapitsky, Dmitry S; Deputatova, Lidiya V; Syrovatka, Roman A
2015-01-01
Trapping of microparticles and aerosols is of great interest for physics and chemistry. We report microparticle trapping in multipole linear Paul trap geometries, operating under Standard Ambient Temperature and Pressure (SATP) conditions. An 8-electrode and a 12-electrode linear trap geometries have been designed and tested with an aim to achieve trapping for larger number of particles and to study microparticle dynamical stability in electrodynamic fields. We report emergence of planar and volume ordered structures of the microparticles, depending on the a.c. trapping frequency and particle specific charge ratio. The electric potential within the trap was mapped using the electrolytic tank method. Particle dynamics was simulated using a stochastic Langevin equation. We emphasize extended regions of stable trapping with respect to quadrupole traps, as well as good agreement between experiment and numerical simulations.
Axion like particle Dark Matter may explain the anomalies of CMB multipoles
Yang, Qiaoli
2015-01-01
The axions/axion like particles (ALPs) may constitute a major part of dark matter. Recently people find that dark matter axions can thermalize and form a Bose-Einstein condensate with a long correlation length. For the ALPs the thermalization scenario is similar. We find that for the linear regime of perturbation the ALPs are different from ordinary point like dark matter particles with additional terms in the first order velocity equation. The differences are especially compelling for string theory originated lighter ALPs. Also, axions/ALPs with a long correlation length can be thermalized due to gravitational interaction therefore alter the entropy of large scale. We propose that it can be a mechanism to explain the anomalies of Cosmic Microwave Background (CMB) multipoles if the mass of ALPs is order of $10^{-29}{\\rm eV}$.
A circuit QED controlled-Z ``AMP'' gate (Adiabatic MultiPole gate)
McKay, David C.; Naik, Ravi; Bishop, Lev S.; Schuster, David I.
2014-03-01
Circuit quantum electrodynamics -- superconducting Josephson junction ``transmon'' qubits coupled via microwave cavities -- is a promising route towards scalable quantum computing. Here we report on experiments coupling two transmon qubits through multiple strongly coupled planar superconducting cavities -- the multipole cavity QED architecture. This design enables large interactions (mediated by real cavity photons) when the transmons are resonant with the cavities, and low off rates when the qubits are tuned away from the cavity resonance. In this talk we will discuss our gate protocol -- the AMP gate -- and report on producing a high fidelity Bell state (| gg > + | ee >) measured from state and process tomography. We will discuss future plans for scaling this architecture beyond two qubits.
Sokalski, W. A.; Shibata, M.; Ornstein, R. L.; Rein, R.
1992-01-01
The quality of several atomic charge models based on different definitions has been analyzed using cumulative atomic multipole moments (CAMM). This formalism can generate higher atomic moments starting from any atomic charges, while preserving the corresponding molecular moments. The atomic charge contribution to the higher molecular moments, as well as to the electrostatic potentials, has been examined for CO and HCN molecules at several different levels of theory. The results clearly show that the electrostatic potential obtained from CAMM expansion is convergent up to R-5 term for all atomic charge models used. This illustrates that higher atomic moments can be used to supplement any atomic charge model to obtain more accurate description of electrostatic properties.
Neutron diffraction study of multipole order in light rare-earth hexaborides
Indian Academy of Sciences (India)
J-M Mignat; J Robert; M Sera; F Iga
2008-10-01
Multipole interactions are known to play a central role in the unconventional properties of light rare-earth hexaborides and especially of CeB6. Substituting Pr at the Ce sites has the effect of enhancing exchange interactions and changing the symmetry of the local 4f charge distribution, while suppressing the octupole moment. The (,) magnetic phase diagrams of the CePr1-B6 compounds display a large variety of ordered phases involving magnetic and/or charge degrees of freedom. Here we focus on the compound Ce0.7Pr0:3B6, which is located slightly beyond the Pr concentration where the antiferroquadrupolar phase of pure CeB6 is suppressed in zero field. The different magnetic structures have been characterized by neutron diffraction and their origin is discussed in connection with recent non-resonant X-ray results by Tanaka et al.
From geodesics of the multipole solutions to the perturbed Kepler problem
Hernandez-Pastora, J L; 10.1103/PhysRevD.82.104001
2010-01-01
A static and axisymmetric solution of the Einstein vacuum equations with a finite number of Relativistic Multipole Moments (RMM) is written in MSA coordinates up to certain order of approximation, and the structure of its metric components is explicitly shown. From the equation of equatorial geodesics we obtain the Binet equation for the orbits and it allows us to determine the gravitational potential that leads to the equivalent classical orbital equations of the perturbed Kepler problem. The relativistic corrections to Keplerian motion are provided by the different contributions of the RMM of the source starting from the Monopole (Schwarzschild correction). In particular, the perihelion precession of the orbit is calculated in terms of the quadrupole and 2$^4$-pole moments. Since the MSA coordinates generalize the Schwarzschild coordinates, the result obtained allows measurement of the relevance of the quadrupole moment in the first order correction to the perihelion frequency-shift.
Directory of Open Access Journals (Sweden)
Aguilar César
2012-08-01
Full Text Available Abstract Background Escherichia coli strains lacking the phosphoenolpyruvate: carbohydrate phosphotransferase system (PTS, which is the major bacterial component involved in glucose transport and its phosphorylation, accumulate high amounts of phosphoenolpyruvate that can be diverted to the synthesis of commercially relevant products. However, these strains grow slowly in glucose as sole carbon source due to its inefficient transport and metabolism. Strain PB12, with 400% increased growth rate, was isolated after a 120 hours adaptive laboratory evolution process for the selection of faster growing derivatives in glucose. Analysis of the genetic changes that occurred in the PB12 strain that lacks PTS will allow a better understanding of the basis of its growth adaptation and, therefore, in the design of improved metabolic engineering strategies for enhancing carbon diversion into the aromatic pathways. Results Whole genome analyses using two different sequencing methodologies: the Roche NimbleGen Inc. comparative genome sequencing technique, and high throughput sequencing with Illumina Inc. GAIIx, allowed the identification of the genetic changes that occurred in the PB12 strain. Both methods detected 23 non-synonymous and 22 synonymous point mutations. Several non-synonymous mutations mapped in regulatory genes (arcB, barA, rpoD, rna and in other putative regulatory loci (yjjU, rssA and ypdA. In addition, a chromosomal deletion of 10,328 bp was detected that removed 12 genes, among them, the rppH, mutH and galR genes. Characterization of some of these mutated and deleted genes with their functions and possible functions, are presented. Conclusions The deletion of the contiguous rppH, mutH and galR genes that occurred simultaneously, is apparently the main reason for the faster growth of the evolved PB12 strain. In support of this interpretation is the fact that inactivation of the rppH gene in the parental PB11 strain substantially increased
Brusa, M; Cresci, G; Schramm, M; Delvecchio, I; Lanzuisi, G; Mainieri, V; Mignoli, M; Zamorani, G; Berta, S; Bongiorno, A; Comastri, A; Fiore, F; Kakkad, D; Marconi, A; Rosario, D; Contini, T; Lamareille, F
2016-01-01
Outflows are invoked in co-evolutionary models to link the growth of SMBH and galaxies through feedback phenomena, and from the analysis of both galaxies and Active Galactic Nuclei (AGN) samples at z$\\sim1-3$, it is becoming clear that powerful winds are quite common in AGN hosts. High-resolution and high S/N observations are needed in order to uncover the physical properties of the wind through kinematics analysis. We exploited VIMOS, SINFONI and Subaru/IRCS Adaptive Optics data to study the kinematics properties on the scale the host galaxy of XID5395, a luminous, X-ray obscured Starburst/Quasar merging system at z$\\sim1.5$ detected in the XMM-COSMOS field, and associated with an extreme [O II] emitter (EW$\\sim200$ \\AA). We mapped, for the first time, at high resolution the kinematics of the [O III] and H$\\alpha$ line complexes and linked them with the [O II] emission. The high spatial resolution achieved allowed us to resolve all the components of the SB-QSO system. Our analysis with a resolution of few kp...
Csizmadia, Peter; Racz, Istvan
2013-01-01
A new numerical method is introduced to study the problem of time evolution of generic non-linear dynamical systems in four-dimensional spacetimes. It is assumed that the time level surfaces are foliated by a one-parameter family of codimension two compact surfaces with no boundary and which are conformal to a Riemannian manifold C. The method is based on the use of a multipole expansion determined uniquely by the induced metric structure on C. The approach is fully spectral in the angular directions. The dynamics in the complementary 1+1 Lorentzian spacetime is followed by making use of a fourth order finite differencing scheme with adaptive mesh refinement. In checking the reliability of the introduced new method the evolution of a massless scalar field on a fixed Kerr spacetime is investigated. In particular, the angular distribution of the evolving field in to be superradiant scattering is studied. The primary aim was to check the validity of some of the recent arguments claiming that the Penrose process,...
A Fast and Adaptive Object Tracking Method%一种快速的自适应目标跟踪方法
Institute of Scientific and Technical Information of China (English)
李善青; 唐亮; 刘科研; 王磊
2012-01-01
由于光照变化、视角差异、相机抖动和部分遮挡等因素的影响,鲁棒的目标跟踪仍然是计算机视觉领域极具挑战性的研究课题.受协同训练和粒子滤波算法的启发,提出一种快速的自适应目标跟踪方法.该方法采用HOG( histogram of oriented gradients)和LBP(local binary pattern)描述目标特征并建立分类器,通过协同训练实现分类器的在线更新,有效解决了误差累积问题.为缩小目标搜索的状态空间,利用IC()NDENSATI()N的运动模型和重要采样提高粒子采样的准确性和效率,并引入校正因子抑制虚假目标的干扰,从而提升了跟踪算法的鲁棒性和分类器更新的准确性.在两组标准测试集和两组自建测试集上的对比实验结果验证了所提出跟踪算法的有效性.与基于全局搜索的跟踪方法相比,该算法在不降低跟踪性能的前提下将处理速度提高25倍以上.%Robust object tracking is still a challenging research topic due to dynamical changes of illumination, viewpoints, camera jitter and partial occlusion. To handle such problems, this paper presents an adaptive object tracking method based on co-training and particle filtering algorithms. An online learning scheme with cooperation of two visual classifiers is designed to alleviate the drifting problem. The histogram of oriented gradients (HOG) and local binary pattern (LBP) are used to describe the object appearance. Two SVM classifiers are constructed separately based on the above two visual features, and online updated by the co-training framework. This updating strategy considers the same classification problem from two complementary viewpoints which successfully overcome the error accumulation problem. In order to reduce the searching state space, we introduce a dynamical model and importance sampling from the ICONDENSATION framework to improve the precision and efficiency of the sampling procedure. A correction term is introduced to
Simmonett, Andrew C.; Pickard, Frank C.; Schaefer, Henry F.; Brooks, Bernard R.
2014-05-01
Next-generation molecular force fields deliver accurate descriptions of non-covalent interactions by employing more elaborate functional forms than their predecessors. Much work has been dedicated to improving the description of the electrostatic potential (ESP) generated by these force fields. A common approach to improving the ESP is by augmenting the point charges on each center with higher-order multipole moments. The resulting anisotropy greatly improves the directionality of the non-covalent bonding, with a concomitant increase in computational cost. In this work, we develop an efficient strategy for enumerating multipole interactions, by casting an efficient spherical harmonic based approach within a particle mesh Ewald (PME) framework. Although the derivation involves lengthy algebra, the final expressions are relatively compact, yielding an approach that can efficiently handle both finite and periodic systems without imposing any approximations beyond PME. Forces and torques are readily obtained, making our method well suited to modern molecular dynamics simulations.
Institute of Scientific and Technical Information of China (English)
许敏; 王士同; 顾鑫; 俞林
2013-01-01
相同应用领域,不同时间、地点或设备检测到的数据域不一定完整.文中针对如何进行数据域间知识传递问题,提出相同领域的概率分布差异可用两域最小包含球中心点表示且其上限与半径无关的定理.基于上述定理,在原有支持向量域描述算法基础上,提出一种数据域中心校正的领域自适应算法,并利用人造数据集和KDD CUP 99入侵检测数据集验证该算法.实验表明,这种领域自适应算法具有较好的性能.%The data fields detected from different times,places or devices are not always complete even if they come from the same data resource.To solve the problem of effectively transferring the knowledge between the two fields,the theorem is proposed that the difference between two probability distributions from two domains can be expressed by the center of each domain's minimum enclosing ball and its up limit has nothing to do with the radius.Based on the theorem,a fast center calibration domain adaptive algorithm,center calibration-core sets support vector data description (CC-CSVDD),is proposed for large domain adaptation by modifying the original support vector domain description (SVDD) algorithm.The validity of the proposed algorithm is experimentally verified on the artificial datasets and the real KDD CUP-99 datasets.Experimental results show that the proposed algorithm has good performance.
A new fast algorithm of self-adaptive search scope for SIFT matching%一种自适应搜索范围的SIFT特征点快速匹配算法
Institute of Scientific and Technical Information of China (English)
唐坤; 韩斌
2014-01-01
Aiming at the high time cost of feature vectors matching in SIFT, a new fast algorithm, called Auto ARV&DP, of self⁃adaptive search scope for SIFT matching is put forward. Firstly, an appropriate reference vector is computed based on the feature vectors set. Secondly, a self⁃adaptive search scope is determined by this reference vector. Finally, the matching of SIFT is performed in a small feature vectors set, which is filtered by norm. Experi⁃mental results showed that compared with the classical BBF algorithm, Auto ARV&DP can effectively decrease the time cost of feature vector matching of SIFT with no loss of matching performance when the size of feature vector set is large.%针对SIFT特征向量匹配时间成本高的问题，提出了一种自适应搜索范围的快速匹配算法－AutoARV＆DP。该算法首先根据特征向量集合计算一个合适的参考向量，然后自适应确定一个搜索范围，最后在一个通过距离过滤后的较小搜索空间中进行特征向量匹配。实验结果表明，与经典的BBF算法相比较，AutoARV＆在获得满意匹配效果的同时，能够有效地降低SIFT特征点匹配的时间成本。
Moroz, Alexander
2009-01-01
The contribution of higher-order multipoles to radiative and non-radiative decay of a single dipole emitter close to a spherical metallic nanoparticle is re-examined. Taking a Ag spherical nanoparticle (AgNP) with the radius of 5 nm as an example, a significant contribution (between 50% and 101% of the total value) of higher-order multipoles to non-radiative rates is found even at the emitter distance of 5 nm from the AgNP surface. On the other hand, the higher-order multipole contribution to radiative rates is negligible. Consequently, a dipole-dipole approximation can yield only an upper bound on the apparent quantum yield. In contrast, the non-radiative rates calculated with the quasistatic Gersten and Nitzan method are found to be in much better agreement with exact electrodynamic results. Finally, the size corrected metal dielectric function is shown to decrease the non-radiative rates near the dipolar surface plasmon resonance.
Völlinger, C
2000-01-01
This note presents a scheme for compensating the persistent current multipole errors of the LHC dipoles by making the coil protection sheets from soft magnetic material of 0.5 mm thickness. The material properties assumed in this study are those of iron sheets with a very low content of impurities (99.99% pure Fe). The non-linearities in the upramp cycle on the b3 multipole component can be reduced by the factor of four (while decreasing the b5 variation by the factor of two. Using sheets of slightly different thicknesses offers a tuning possibility for the series magnet coils and can compensate deviations arising from cables of different suppliers. The calculation method is based on a semi-analytical hysteresis model for hard superconductors and an M(B) - iteration using the method of coupled boundary elements - finite elements (BEM - FEM). It is now possible to compute persistent current multipole errors of geometries with arbitrarily shaped iron yokes and thin layers of soft magnetic material such as tunin...
STEM-EELS analysis of multipole surface plasmon modes in symmetry-broken AuAg nanowire dimers
Schubert, Ina; Sigle, Wilfried; van Aken, Peter A.; Trautmann, Christina; Toimil-Molares, Maria Eugenia
2015-03-01
Surface plasmon coupling in nanowires separated by small gaps generates high field enhancements at the position of the gap and is thus of great interest for sensing applications. It is known that the nanowire dimensions and in particular the symmetry of the structures has strong influence on the plasmonic properties of the dimer structure. Here, we report on multipole surface plasmon coupling in symmetry-broken AuAg nanowire dimers. Our dimers, consisting of two nanowires with different lengths and separated by gaps of only 10 to 30 nm, were synthesized by pulsed electrochemical deposition in ion track-etched polymer templates. Electron energy-loss spectroscopy in scanning transmission electron microscopy allows us to resolve up to nine multipole order surface plasmon modes of these dimers spectrally separated from each other. The spectra evidence plasmon coupling between resonances of different multipole order, resulting in the generation of additional plasmonic modes. Since such complex structures require elaborated synthesis techniques, dimer structures with complex composition, morphology and shape are created. We demonstrate that finite element simulations on pure Au dimers can predict the generated resonances in the fabricated structures. The excellent agreement of our experiment on AuAg dimers with finite integration simulations using CST microwave studio manifests great potential to design complex structures for sensing applications.
Institute of Scientific and Technical Information of China (English)
陈世明; 郑丽楠; 吴龙龙; 方华京
2012-01-01
For the simultaneous localization and mapping (SLAM) problem of mobile robots in the three-dimensional space, a fast and adaptive SLAM algorithm based on the improved strong tracking filter (STF) is proposed. Firstly, the noise covariance matrixes of STF are adaptively estimated on line to suppress the effects of noises on system state estimation, which makes the system state estimation converge to real values quickly. Secondly, singular value decomposition (SVD) is used to decompose the state covariance matrix which can help the algorithm get better numerical stability. This algorithm can improve the adaptive ability of time-varying systems and the state estimation precision, and the comparative simulation results with STF-SLAM algorithm illustrate the effectiveness and the superiority of the proposed algorithmon on the denoising performance and the estimation precise.%针对3维空间中移动机器人同时定位与地图构建(SLAM)问题,提出了一种基于改进强跟踪滤波(STF)的快速自适应SLAM算法.该算法首先对于强跟踪滤波器的噪声协方差阵进行在线自适应估计,用于抑制噪声对系统状态估计的影响,使系统状态估计迅速收敛到真实值附近;随后将状态协方差矩阵进行奇异值分解(SVD),提高算法的数值稳定性.该算法可提高对系统时变的自适应能力以及系统状态估计精度.与基于强跟踪滤波器的SLAM算法的仿真对比结果说明了该算法的有效性及其在抑噪性能和估计精度方面的优越性.
Liska, Sebastian; Colonius, Tim
2017-02-01
A new parallel, computationally efficient immersed boundary method for solving three-dimensional, viscous, incompressible flows on unbounded domains is presented. Immersed surfaces with prescribed motions are generated using the interpolation and regularization operators obtained from the discrete delta function approach of the original (Peskin's) immersed boundary method. Unlike Peskin's method, boundary forces are regarded as Lagrange multipliers that are used to satisfy the no-slip condition. The incompressible Navier-Stokes equations are discretized on an unbounded staggered Cartesian grid and are solved in a finite number of operations using lattice Green's function techniques. These techniques are used to automatically enforce the natural free-space boundary conditions and to implement a novel block-wise adaptive grid that significantly reduces the run-time cost of solutions by limiting operations to grid cells in the immediate vicinity and near-wake region of the immersed surface. These techniques also enable the construction of practical discrete viscous integrating factors that are used in combination with specialized half-explicit Runge-Kutta schemes to accurately and efficiently solve the differential algebraic equations describing the discrete momentum equation, incompressibility constraint, and no-slip constraint. Linear systems of equations resulting from the time integration scheme are efficiently solved using an approximation-free nested projection technique. The algebraic properties of the discrete operators are used to reduce projection steps to simple discrete elliptic problems, e.g. discrete Poisson problems, that are compatible with recent parallel fast multipole methods for difference equations. Numerical experiments on low-aspect-ratio flat plates and spheres at Reynolds numbers up to 3700 are used to verify the accuracy and physical fidelity of the formulation.
Low loss pole configuration for multi-pole homopolar magnetic bearings
Blumenstock, Kenneth A. (Inventor); Hakun, Claef F. (Inventor)
2001-01-01
A new pole configuration for multi-pole homopolar bearings proposed in this invention reduces rotational losses caused by eddy-currents generated when non-uniform flux distributions exist along the rotor surfaces. The new homopolar magnetic bearing includes a stator with reduced pole-to-pole and exhibits a much more uniform rotor flux than with large pole-to-pole gaps. A pole feature called a pole-link is incorporated into the low-loss poles to provide a uniform pole-to-pole gap and a controlled path for pole-to-pole flux. In order to implement the low-loss pole configuration of magnetic bearings with small pole-to-pole gaps, a new stator configuration was developed to facilitate installation of coil windings. The stator was divided into sector shaped pieces, as many pieces as there are poles. Each sector-shaped pole-piece can be wound on a standard coil winding machine, and it is practical to wind precision layer wound coils. To achieve maximum actuation efficiency, it is desirable to use all the available space for the coil formed by the natural geometric configuration. Then, the coils can be wound in a tapered shape. After winding, the sectored-pole-pieces are installed into and fastened by bonding or other means, to a ring of material which encloses the sectored-pole-pieces, forming a complete stator.
Multipole expansion of Green's function for guided waves in a transversely isotropic plate
Energy Technology Data Exchange (ETDEWEB)
Lee, Heung Son; Kim, Yoon Young [Seoul National University, Seoul (Korea, Republic of)
2015-05-15
The multipole expansion of Green's function in a transversely isotropic plate is derived based on the eigenfunction expansion method. For the derivation, Green's function is expressed in a bilinear form composed of the regular and singular Lamb-type (or shear-horizontal) wave eigenfunctions. The specific form of the derived Green's function facilitates the handling of general scattering problems in an elastic plate when numerical methods such as the methods of the null-field integral equations are employed. In the derivation, the integral transform of an arbitrary guided wave field is first constructed by the Lamb-type and shear horizontal wave eigenfunctions that work as the kernel functions. After showing that the thickness-dependent parts of the eigenfunctions are orthogonal to each other in the transformed space, Green's function is explicitly derived by using the orthogonality. As an application of the derived Green's function, a scattering problem is solved by the transition matrix method.
Some Physical Consequences of Abrupt Changes in the Multipole Moments of a Gravitating Body
Barrabès, C; Hogan, P A
1997-01-01
The Barrabès-Israel theory of light-like shells in General Relativity= is used to show explicitly that in general a light-like shell is accompanied= by an impulsive gravitational wave. The gravitational wave is identified by = its Petrov Type N contribution to a Dirac delta-function term in the Weyl conformal curvature tensor (with the delta-function singular on the null hypersurface history of the wave and shell). An example is described in w= hich an asymptotically flat static vacuum Weyl space-time experiences a sudden change across a null hypersurface in the multipole moments of its isolate= d axially symmetric source. A light-like shell and an impulsive gravitation= al wave are identified, both having the null hypersurface as history. The stress-energy in the shell is dominated (at large distance from the sourc= e) by the jump in the monopole moment (the mass) of the source with the jump in= the quadrupole moment mainly responsible for the stress being anisotropic. Th= e gravitational wave owes its exis...
Oberberg, Moritz; Styrnoll, Tim; Ries, Stefan; Bienholz, Stefan; Awakowicz, Peter
2015-09-01
Reactive sputter processes are used for the deposition of hard, wear-resistant and non-corrosive ceramic layers such as aluminum oxide (Al2O3) . A well known problem is target poisoning at high reactive gas flows, which results from the reaction of the reactive gas with the metal target. Consequently, the sputter rate decreases and secondary electron emission increases. Both parameters show a non-linear hysteresis behavior as a function of the reactive gas flow and this leads to process instabilities. This work presents a new control method of Al2O3 deposition in a multiple frequency CCP (MFCCP) based on plasma parameters. Until today, process controls use parameters such as spectral line intensities of sputtered metal as an indicator for the sputter rate. A coupling between plasma and substrate is not considered. The control system in this work uses a new plasma diagnostic method: The multipole resonance probe (MRP) measures plasma parameters such as electron density by analyzing a typical resonance frequency of the system response. This concept combines target processes and plasma effects and directly controls the sputter source instead of the resulting target parameters.
Stability of spherically symmetric, charged black holes and multipole moments for stationary systems
Energy Technology Data Exchange (ETDEWEB)
Gursel, H.Y.
1983-01-01
This dissertation is written in two parts. Part I deals with the question of stability of a spherically symmetric, charged black hole against scalar, electromagnetic, and gravitational perturbations. It consists of two papers written in collaboration with Igor D. Novikov, Vernon D. Sandberg and A.A. Starobinsky. In these papers the dynamical evolution of these perturbations on the interior of a Reissner-Nordstrom black hole is described. The instability of the hole's Cauchy horizon is discussed in detail in terms of the energy densities of the test fields as measured by a freely falling observer approaching the Cauchy horizon. It is concluded that the Cauchy horizon of the analytically extended Reissner-Nordstrom solution is highly unstable and not a physical feature of a realistic gravitational collapse. Part II of this dissertation addresses two problems closely connected with multipole structure of stationary, asymptotically flat spacetimes. It consists of two papers written in collaboration with Kip S. Thorne. The first one shows the equivalence of the moments defined by Kip S. Thorne and the moments defined by Robert Geroch and Richard Hansen. The second proves a conjecture by Kip S. Thorne: In the limit of ''slow'' motion, general relativistic gravity produces no changes whatsoever in the classical Euler equations of rigid body motion. This conjecture is proved by giving an algorithm for generating rigidly rotating solutions of Einstein's equation from nonrotating, static solutions.
Coe, J P; Paterson, M J
2013-01-01
The method of Monte Carlo configuration interaction (MCCI) [1,2] is applied to the calculation of multipole moments. We look at the ground and excited state dipole moments in carbon monoxide. We then consider the dipole of NO, the quadrupole of the nitrogen molecule and of BH. An octupole of methane is also calculated. We consider experimental geometries and also stretched bonds. We show that these non-variational quantities may be found to relatively good accuracy when compared with FCI results, yet using only a small fraction of the full configuration interaction space. MCCI results in the aug-cc-pVDZ basis are seen to generally have reasonably good agreement with experiment. We also investigate the performance of MCCI when applied to ionisation energies and electron affinities of atoms in an aug-cc-pVQZ basis. We compare the MCCI results with full configuration-interaction quantum Monte Carlo [3,4] and `exact' non-relativistic results [3,4]. We show that MCCI could be a useful alternative for the calculati...
MULTIPOLE GRAVITATIONAL LENSING AND HIGH-ORDER PERTURBATIONS ON THE QUADRUPOLE LENS
Energy Technology Data Exchange (ETDEWEB)
Chu, Z.; Lin, W. P. [Key Laboratory for Research in Galaxies and Cosmology, Shanghai Astronomical Observatory, Chinese Academy of Sciences, 80 Nandan Road, Shanghai 200030 (China); Li, G. L. [Purple Mountain Observatory, 2 West Beijing Road, Nanjing 210008 (China); Kang, X., E-mail: chuzhe@shao.ac.cn, E-mail: linwp@shao.ac.cn [Partner Group of MPI for Astronomy, Purple Mountain Observatory, 2 West Beijing Road, Nanjing 210008 (China)
2013-03-10
An arbitrary surface mass density of the gravitational lens can be decomposed into multipole components. We simulate the ray tracing for the multipolar mass distribution of the generalized Singular Isothermal Sphere model based on deflection angles, which are analytically calculated. The magnification patterns in the source plane are then derived from an inverse shooting technique. As has been found, the caustics of odd mode lenses are composed of two overlapping layers for some lens models. When a point source traverses this kind of overlapping caustics, the image numbers change by {+-}4, rather than {+-}2. There are two kinds of caustic images. One is the critical curve and the other is the transition locus. It is found that the image number of the fold is exactly the average value of image numbers on two sides of the fold, while the image number of the cusp is equal to the smaller one. We also focus on the magnification patterns of the quadrupole (m = 2) lenses under the perturbations of m = 3, 4, and 5 mode components and found that one, two, and three butterfly or swallowtail singularities can be produced, respectively. With the increasing intensity of the high-order perturbations, the singularities grow up to bring sixfold image regions. If these perturbations are large enough to let two or three of the butterflies or swallowtails make contact, then eightfold or tenfold image regions can be produced as well. The possible astronomical applications are discussed.
Wang, A-Q; Guo, L-X; Chai, C
2011-02-01
A fast numerical method has been proposed in this paper for calculating the electromagnetic scattering from a perfectly electric conducting object above a two-layered dielectric rough surface. The focus in this study is large incidence. The parallel fast multipole method is combined with the method of moments for fast implementation of the scattering from this composite model. The biconjugate gradient method is adopted to solve the unsymmetrical matrix equation and parallelized. The simulating time and parallel speedup ratio with different processors are provided. Several numerical results are shown and analyzed to discuss the influences of the parameters of the rough surface, the object, and the intermediate medium on the bistatic scattering.
Fast computation of general forward gravitation problems
Casenave, Fabien; Métivier, Laurent; Pajot-Métivier, Gwendoline; Panet, Isabelle
2016-07-01
We consider the well-known problem of the forward computation of the gradient of the gravitational potential generated by a mass density distribution of general 3D geometry. Many methods have been developed for given geometries, and the computation time often appears as a limiting practical issue for considering large or complex problems. In this work, we develop a fast method to carry out this computation, where a tetrahedral mesh is used to model the mass density distribution. Depending on the close- or long-range nature of the involved interactions, the algorithm automatically switches between analytic integration formulae and numerical quadratic formulae, and relies on the Fast Multipole Method to drastically increase the computation speed of the long-range interactions. The parameters of the algorithm are empirically chosen for the computations to be the fastest possible while guarantying a given relative accuracy of the result. Computations that would load many-core clusters for days can now be carried out on a desk computer in minutes. The computation of the contribution of topographical masses to the Earth's gravitational field at the altitude of the GOCE satellite and over France are proposed as numerical illustrations of the method.
Lin, Dejun
2015-09-01
Accurate representation of intermolecular forces has been the central task of classical atomic simulations, known as molecular mechanics. Recent advancements in molecular mechanics models have put forward the explicit representation of permanent and/or induced electric multipole (EMP) moments. The formulas developed so far to calculate EMP interactions tend to have complicated expressions, especially in Cartesian coordinates, which can only be applied to a specific kernel potential function. For example, one needs to develop a new formula each time a new kernel function is encountered. The complication of these formalisms arises from an intriguing and yet obscured mathematical relation between the kernel functions and the gradient operators. Here, I uncover this relation via rigorous derivation and find that the formula to calculate EMP interactions is basically invariant to the potential kernel functions as long as they are of the form f(r), i.e., any Green's function that depends on inter-particle distance. I provide an algorithm for efficient evaluation of EMP interaction energies, forces, and torques for any kernel f(r) up to any arbitrary rank of EMP moments in Cartesian coordinates. The working equations of this algorithm are essentially the same for any kernel f(r). Recently, a few recursive algorithms were proposed to calculate EMP interactions. Depending on the kernel functions, the algorithm here is about 4-16 times faster than these algorithms in terms of the required number of floating point operations and is much more memory efficient. I show that it is even faster than a theoretically ideal recursion scheme, i.e., one that requires 1 floating point multiplication and 1 addition per recursion step. This algorithm has a compact vector-based expression that is optimal for computer programming. The Cartesian nature of this algorithm makes it fit easily into modern molecular simulation packages as compared with spherical coordinate-based algorithms. A
DEFF Research Database (Denmark)
Andersen, Torben Juul; Hallin, Carina Antonia
2016-01-01
Contemporary organizations operate under turbulent business conditions and must adapt their strategies to ongoing changes. This article argues that sustainable organizational performance is achieved when top management directs and coordinates interactive processes anchored in emerging organizatio......Contemporary organizations operate under turbulent business conditions and must adapt their strategies to ongoing changes. This article argues that sustainable organizational performance is achieved when top management directs and coordinates interactive processes anchored in emerging...... experiential insights from the fast response processes can be aggregated systematically from frontline employees and fed into the slow process of reasoning. When the fast and slow processes interact they form a dynamic system that adapts organizational activities to the changing conditions which identifies...... the adaptive organization....
Hickstein, Daniel D.; Cole, Jacqueline M.; Turner, Michael J.; Jayatilaka, Dylan
2013-08-01
The rational design of next-generation optical materials requires an understanding of the connection between molecular structure and the solid-state optical properties of a material. A fundamental challenge is to utilize the accurate structural information provided by X-ray diffraction to explain the properties of a crystal. For years, the multipole refinement has been the workhorse technique for transforming high-resolution X-ray diffraction datasets into the detailed electron density distribution of crystalline material. However, the electron density alone is not sufficient for a reliable calculation of the nonlinear optical properties of a material. Recently, the X-ray constrained wavefunction refinement has emerged as a viable alternative to the multipole refinement, offering several potential advantages, including the calculation of a wide range of physical properties and seeding the refinement process with a physically reasonable starting point. In this study, we apply both the multipole refinement and the X-ray constrained wavefunction technique to four molecules with promising nonlinear optical properties and diverse structural motifs. In general, both techniques obtain comparable figures of merit and generate largely similar electron densities, demonstrating the wide applicability of the X-ray constrained wavefunction method. However, there are some systematic differences between the electron densities generated by each technique. Importantly, we find that the electron density generated using the X-ray constrained wavefunction method is dependent on the exact location of the nuclei. The X-ray constrained wavefunction refinement makes smaller changes to the wavefunction when coordinates from the Hartree-Fock-based Hirshfeld atom refinement are employed rather than coordinates from the multipole refinement, suggesting that coordinates from the Hirshfeld atom refinement allow the X-ray constrained wavefunction method to produce more accurate wavefunctions. We
The polarization observables T, P, and H and their impact on $\\gamma p \\to p\\pi^0$ multipoles
Hartmann, J; Anisovich, A V; Bayadilov, D; Beck, R; Becker, M; Beloglazov, Y; Berlin, A; Bichow, M; Böse, S; Brinkmann, K -Th; Crede, V; Dieterle, M; Eberhardt, H; Elsner, D; Fornet-Ponse, K; Friedrich, St; Frommberger, F; Funke, Ch; Gottschall, M; Gridnev, A; Grüner, M; Görtz, St; Gutz, E; Hammann, Ch; Hannappel, J; Hannen, V; Herick, J; Hillert, W; Hoffmeister, Ph; Honisch, Ch; Jahn, O; Jude, T; Käser, A; Kaiser, D; Kalinowsky, H; Kalischewski, F; Klassen, P; Keshelashvili, I; Klein, F; Klempt, E; Koop, K; Krusche, B; Kube, M; Lang, M; Lopatin, I; Makonyi, K; Messi, F; Metag, V; Meyer, W; Müller, J; Nanova, M; Nikonov, V; Novinski, D; Novotny, R; Piontek, D; Reeve, S; Rosenbaum, Ch; Roth, B; Reicherz, G; Rostomyan, T; Runkel, St; Sarantsev, A; Schmidt, Ch; Schmieden, H; Schmitz, R; Seifen, T; Sokhoyan, V; Thämer, Ph; Thiel, A; Thoma, U; Urban, M; van Pee, H; Walther, D; Wendel, Ch; Wiedner, U; Wilson, A; Winnebeck, A; Witthauer, L
2015-01-01
Data on the polarization observables T, P, and H for the reaction $\\gamma p\\to p\\pi^0$ are reported. Compared to earlier data from other experiments, our data are more precise and extend the covered range in energy and angle substantially. The results were extracted from azimuthal asymmetries measured using a transversely polarized target and linearly polarized photons. The data were taken at the Bonn electron stretcher accelerator ELSA with the CBELSA/TAPS detector. Within the Bonn-Gatchina partial wave analysis, the new polarization data lead to a significant narrowing of the error band for the multipoles for neutral-pion photoproduction.
The polarization observables T, P, and H and their impact on γp→pπ0 multipoles
Directory of Open Access Journals (Sweden)
J. Hartmann
2015-09-01
Full Text Available Data on the polarization observables T, P, and H for the reaction γp→pπ0 are reported. Compared to earlier data from other experiments, our data are more precise and extend the covered range in energy and angle substantially. The results were extracted from azimuthal asymmetries measured using a transversely polarized target and linearly polarized photons. The data were taken at the Bonn electron stretcher accelerator ELSA with the CBELSA/TAPS detector. Within the Bonn-Gatchina partial wave analysis, the new polarization data lead to a significant narrowing of the error band for the multipoles for neutral-pion photoproduction.
The Effect of Multipole-Enhanced Diffusion on the Joule Heating of a Cold Non-Neutral Plasma
Chapman, Steven Francis
One proposed technique for trapping anti-atoms is to superimpose a Ioffe-Pritchard style magnetic-minimum neutral trap on a standard Penning trap used to trap the charged atomic constituents. Adding a magnetic multipole field in this way removes the azimuthal symmetry of the ideal Penning trap and introduces a new avenue for radial diffusion. Enhanced diffusion will lead to increased Joule heating of a non-neutral plasma, potentially adversely affecting the formation rate of anti-atoms and increasing the required trap depth. We present a model of this effect, along with an approach to minimizing it, with comparison to measurements from an intended anti-atom trap.
Bereau, Tristan; von Lilienfeld, O Anatole
2015-01-01
Accurate predictions of van der Waals forces require faithful models of dispersion, permanent and induced multipole-moments, as well as penetration and repulsion. We introduce a universal combined physics- and data-driven model of dispersion and multipole-moment contributions, respectively. Atomic multipoles are estimated "on-the-fly" for any organic molecule in any conformation using a machine learning approach trained on quantum chemistry results for tens of thousands of atoms in varying chemical environments drawn from thousands of organic molecules. Globally neutral, cationic, and anionic molecular charge states can be treated with individual models. Dispersion interactions are included via recently-proposed classical many-body potentials. For nearly one thousand intermolecular dimers, this approximate van der Waals model is found to reach an accuracy similar to that of state-of-the-art force fields, while bypassing the need for parametrization. Estimates of cohesive energies for the benzene crystal confi...
van Voorn, George A. K.; Ligtenberg, Arend; Molenaar, Jaap
2017-01-01
Adaptation of agents through learning or evolution is an important component of the resilience of Complex Adaptive Systems (CAS). Without adaptation, the flexibility of such systems to cope with outside pressures would be much lower. To study the capabilities of CAS to adapt, social simulations with agent-based models (ABMs) provide a helpful tool. However, the value of ABMs for studying adaptation depends on the availability of methodologies for sensitivity analysis that can quantify resilience and adaptation in ABMs. In this paper we propose a sensitivity analysis methodology that is based on comparing time-dependent probability density functions of output of ABMs with and without agent adaptation. The differences between the probability density functions are quantified by the so-called earth-mover’s distance. We use this sensitivity analysis methodology to quantify the probability of occurrence of critical transitions and other long-term effects of agent adaptation. To test the potential of this new approach, it is used to analyse the resilience of an ABM of adaptive agents competing for a common-pool resource. Adaptation is shown to contribute positively to the resilience of this ABM. If adaptation proceeds sufficiently fast, it may delay or avert the collapse of this system. PMID:28196372
Lin, Dejun
2015-01-01
Accurate representation of intermolecular forces has been the central task of classical atomic simulations, known as molecular mechanics. Recent advancements in molecular mechanics models have put forward the explicit representation of permanent and/or induced electric multipole (EMP) moments. The formulas developed so far to calculate EMP interactions tend to have complicated expressions, especially in Cartesian coordinates, which can only be applied to a specific kernel potential function. For example, one needs to develop a new formula each time a new kernel function is encountered. The complication of these formalisms arises from an intriguing and yet obscured mathematical relation between the kernel functions and the gradient operators. Here, I uncover this relation via rigorous derivation and find that the formula to calculate EMP interactions is basically invariant to the potential kernel functions as long as they are of the form f(r), i.e., any Green’s function that depends on inter-particle distance. I provide an algorithm for efficient evaluation of EMP interaction energies, forces, and torques for any kernel f(r) up to any arbitrary rank of EMP moments in Cartesian coordinates. The working equations of this algorithm are essentially the same for any kernel f(r). Recently, a few recursive algorithms were proposed to calculate EMP interactions. Depending on the kernel functions, the algorithm here is about 4–16 times faster than these algorithms in terms of the required number of floating point operations and is much more memory efficient. I show that it is even faster than a theoretically ideal recursion scheme, i.e., one that requires 1 floating point multiplication and 1 addition per recursion step. This algorithm has a compact vector-based expression that is optimal for computer programming. The Cartesian nature of this algorithm makes it fit easily into modern molecular simulation packages as compared with spherical coordinate-based algorithms. A
Energy Technology Data Exchange (ETDEWEB)
Lin, Dejun, E-mail: dejun.lin@gmail.com [Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, New York 14642 (United States)
2015-09-21
Accurate representation of intermolecular forces has been the central task of classical atomic simulations, known as molecular mechanics. Recent advancements in molecular mechanics models have put forward the explicit representation of permanent and/or induced electric multipole (EMP) moments. The formulas developed so far to calculate EMP interactions tend to have complicated expressions, especially in Cartesian coordinates, which can only be applied to a specific kernel potential function. For example, one needs to develop a new formula each time a new kernel function is encountered. The complication of these formalisms arises from an intriguing and yet obscured mathematical relation between the kernel functions and the gradient operators. Here, I uncover this relation via rigorous derivation and find that the formula to calculate EMP interactions is basically invariant to the potential kernel functions as long as they are of the form f(r), i.e., any Green’s function that depends on inter-particle distance. I provide an algorithm for efficient evaluation of EMP interaction energies, forces, and torques for any kernel f(r) up to any arbitrary rank of EMP moments in Cartesian coordinates. The working equations of this algorithm are essentially the same for any kernel f(r). Recently, a few recursive algorithms were proposed to calculate EMP interactions. Depending on the kernel functions, the algorithm here is about 4–16 times faster than these algorithms in terms of the required number of floating point operations and is much more memory efficient. I show that it is even faster than a theoretically ideal recursion scheme, i.e., one that requires 1 floating point multiplication and 1 addition per recursion step. This algorithm has a compact vector-based expression that is optimal for computer programming. The Cartesian nature of this algorithm makes it fit easily into modern molecular simulation packages as compared with spherical coordinate-based algorithms. A
Charge Changing Experiments and Multipole Expansions of Electron Loss to the Continuum.
Atan, H.
Available from UMI in association with The British Library. Charge changing processes involving single electron loss for 0.6-2.2 MeV _sp{2}{4 }He^{+} ions and 2.0-3.0 MeV _sp{2}{3 }He^{+} ions, and single electron capture for 0.6-2.2 MeV _sp {2}{4}He^{+ } ions colliding with He, Ne and Ar have bee studied. The gas target was in the form of a gas beam jet, well localised and directed, obtained using a multicapillary array system. The measured absolute cross sections for single electron loss sigma_{12 }, were in good agreement with most other experimental data. These results were also compared with the theoretical quantal, semi-classical and classical calculations. For a He target, quantal Born approximation calculations gave good agreement especially towards the high energy region but not for an Ar target. The semi-classical calculations gave good agreement for all three target systems, in terms of the magnitude, velocity dependence as well the Z _{t}, dependence. The classical calculations gave not only a good estimate of the cross -sections but also predicted the velocity dependence quite accurately. The measured absolute cross sections for single electron capture sigma_{10} agreed well with most other experimental data and with the classical binary encounter calculations. Electron loss to the continuum (ELC) for 1.4-2.8 MeV He^{+} colliding with He, Ne and Ar have also been studied using a second-order focussing, 30^circ parallel plate spectrometer. The analysis was performed using a specially developed multipole expansion method, allowing an extraction of the parameters in an apparatus independent manner. The first order anisotropy parameter beta_1, was found to exhibit a systematic target dependence, with negative values for Ne and Ar targets, indicating an asymmetric cusp with an enhanced intensity of electrons at velocities lower than that of the ions. Such cusp shape was not predicted by any existing first-order theory. The second-order anisotropy parameter
Real-time digital signal recovery for a multi-pole low-pass transfer function system
Lee, Jhinhwan
2017-08-01
In order to solve the problems of waveform distortion and signal delay by many physical and electrical systems with multi-pole linear low-pass transfer characteristics, a simple digital-signal-processing (DSP)-based method of real-time recovery of the original source waveform from the distorted output waveform is proposed. A mathematical analysis on the convolution kernel representation of the single-pole low-pass transfer function shows that the original source waveform can be accurately recovered in real time using a particular moving average algorithm applied on the input stream of the distorted waveform, which can also significantly reduce the overall delay time constant. This method is generalized for multi-pole low-pass systems and has noise characteristics of the inverse of the low-pass filter characteristics. This method can be applied to most sensors and amplifiers operating close to their frequency response limits to improve the overall performance of data acquisition systems and digital feedback control systems.
Multipole analysis of IceCube data to search for dark matter accumulated in the Galactic halo
Energy Technology Data Exchange (ETDEWEB)
Aartsen, M.G.; Hill, G.C.; Robertson, S.; Whelan, B.J. [University of Adelaide, School of Chemistry and Physics, Adelaide, SA (Australia); Ackermann, M.; Berghaus, P.; Bernardini, E.; Bretz, H.P.; Cruz Silva, A.H.; Gluesenkamp, T.; Gora, D.; Jacobi, E.; Kaminsky, B.; Karg, T.; Middell, E.; Mohrmann, L.; Nahnhauer, R.; Schoenwald, A.; Shanidze, R.; Spiering, C.; Stoessl, A.; Terliuk, A.; Yanez, J.P. [DESY, Zeuthen (Germany); Adams, J.; Brown, A.M.; Hickford, S.; Macias, O. [University of Canterbury, Department of Physics and Astronomy, Christchurch (New Zealand); Aguilar, J.A.; Altmann, D.; Christov, A.; Montaruli, T.; Rameez, M.; Vallecorsa, S. [Universite de Geneve, Departement de physique nucleaire et corpusculaire, Geneva (Switzerland); Ahlers, M.; Arguelles, C.; BenZvi, S.; Chirkin, D.; Day, M.; Desiati, P.; Diaz-Velez, J.C.; Eisch, J.; Fadiran, O.; Feintzeig, J.; Gladstone, L.; Halzen, F.; Hoshina, K.; Jacobsen, J.; Jero, K.; Karle, A.; Kauer, M.; Kelley, J.L.; Kheirandish, A.; Kopper, C.; Kurahashi, N.; Larsen, D.T.; Maruyama, R.; McNally, F.; Middlemas, E.; Morse, R.; Rees, I.; Riedel, B.; Rodrigues, J.P.; Santander, M.; Tobin, M.N.; Tosi, D.; Vandenbroucke, J.; Van Santen, J.; Weaver, C.; Wellons, M.; Wendt, C.; Westerhoff, S.; Whitehorn, N. [University of Wisconsin, Department of Physics, Wisconsin IceCube Particle Astrophysics Center, Madison, WI (United States); Ahrens, M.; Bohm, C.; Danninger, M.; Finley, C.; Flis, S.; Hulth, P.O.; Hultqvist, K.; Walck, C.; Wolf, M.; Zoll, M. [Stockholm University, Department of Physics, Oskar Klein Centre, Stockholm (Sweden); Anderson, T.; Arlen, T.C.; De Andre, J.P.A.M.; DeYoung, T.; Dunkman, M.; Eagan, R.; Groh, J.C.; Huang, F.; Quinnan, M.; Smith, M.W.E.; Stanisha, N.A.; Tesic, G. [Pennsylvania State University, Department of Physics, University Park, PA (United States); Auffenberg, J.; Bissok, M.; Blumenthal, J.; Gier, D.; Gretskov, P.; Haack, C.; Hallen, P.; Heinen, D.; Hellwig, D.; Jagielski, K.; Koob, A.; Kriesten, A.; Krings, K.; Leuermann, M.; Paul, L.; Penek, Oe.; Puetz, J.; Raedel, L.; Reimann, R.; Rongen, M.; Schoenen, S.; Schukraft, A.; Vehring, M.; Wallraff, M.; Wichary, C.; Wiebusch, C.H.; Zierke, S. [RWTH Aachen University, III. Physikalisches Institut, Aachen (Germany); Bai, X. [South Dakota School of Mines and Technology, Physics Department, Rapid City, SD (United States); Barwick, S.W.; Yodh, G. [University of California, Department of Physics and Astronomy, Irvine, CA (United States); Baum, V.; Eberhardt, B.; Koepke, L.; Kroll, G.; Luenemann, J.; Sander, H.G.; Schatto, K.; Wiebe, K. [University of Mainz, Institute of Physics, Mainz (Germany); Beatty, J.J. [Ohio State University, Department of Physics, Center for Cosmology and Astro-Particle Physics, Columbus, OH (United States); Ohio State University, Department of Astronomy, Columbus, OH (United States); Becker Tjus, J.; Bos, F.; Eichmann, B.; Fedynitch, A.; Kroll, M.; Saba, S.M.; Schoeneberg, S.; Unger, E. [Ruhr-Universitaet Bochum, Fakultaet fuer Physik und Astronomie, Bochum (Germany); Becker, K.H.; Bindig, D.; Fischer-Wasels, T.; Helbing, K.; Hoffmann, R.; Klaes, J.; Kopper, S.; Naumann, U.; Obertacke, A.; Omairat, A.; Posselt, J.; Soldin, D.; Tepe, A. [University of Wuppertal, Department of Physics, Wuppertal (Germany); Berley, D.; Blaufuss, E.; Christy, B.; Felde, J.; Goodman, J.A.; Hellauer, R.; Hoffman, K.D.; Huelsnitz, W.; Meagher, K.; Olivas, A.; Redl, P.; Richman, M.; Schmidt, T.; Sullivan, G.W.; Wissing, H. [University of Maryland, Department of Physics, College Park, MD (United States); Bernhard, A.; Coenders, S.; Gross, A.; Jurkovic, M.; Leute, J.; Resconi, E.; Schulz, O.; Sestayo, Y. [Technische Universitaet Muenchen, Garching (Germany); Besson, D.Z. [University of Kansas, Department of Physics and Astronomy, Lawrence, KS (United States); Binder, G.; Gerhardt, L.; Ha, C.; Klein, S.R.; Miarecki, S. [University of California, Department of Physics, Berkeley, CA (United States); Lawrence Berkeley National Laboratory, Berkeley, CA (United States); Boersma, D.J.; Botner, O.; Euler, S.; Hallgren, A.; Perez de los Heros, C.; Stroem, R.; Taavola, H. [Uppsala University, Department of Physics and Astronomy, Uppsala (Sweden); Bose, D.; Rott, C. [Sungkyunkwan University, Department of Physics, Suwon (Korea, Republic of); Collaboration: IceCube Collaboration; and others
2015-01-01
Dark matter which is bound in the Galactic halo might self-annihilate and produce a flux of stable final state particles, e.g. high energy neutrinos. These neutrinos can be detected with IceCube, a cubic-kilometer sized Cherenkov detector. Given IceCube's large field of view, a characteristic anisotropy of the additional neutrino flux is expected. In this paper we describe a multipole method to search for such a large-scale anisotropy in IceCube data. This method uses the expansion coefficients of a multipole expansion of neutrino arrival directions and incorporates signal-specific weights for each expansion coefficient. We apply the technique to a high-purity muon neutrino sample from the Northern Hemisphere. The final result is compatible with the nullhypothesis. As no signal was observed, we present limits on the self-annihilation cross-section averaged over the relative velocity distribution left angle σ{sub A}υ right angle down to 1.9 x 10{sup -23} cm{sup 3} s{sup -1} for a dark matter particle mass of 700-1,000 GeV and direct annihilation into ν anti ν. The resulting exclusion limits come close to exclusion limits from γ-ray experiments, that focus on the outer Galactic halo, for high dark matter masses of a few TeV and hard annihilation channels. (orig.)
Indian Academy of Sciences (India)
R Saravanan; K S Syed Ali; S Israel
2008-04-01
The local, average and electronic structure of the semiconducting materials Si and Ge has been studied using multipole, maximum entropy method (MEM) and pair distribution function (PDF) analyses, using X-ray powder data. The covalent nature of bonding and the interaction between the atoms are clearly revealed by the two-dimensional MEM maps plotted on (1 0 0) and (1 1 0) planes and one-dimensional density along [1 0 0], [1 1 0] and [1 1 1] directions. The mid-bond electron densities between the atoms are 0.554 e/Å3 and 0.187 e/Å3 for Si and Ge respectively. In this work, the local structural information has also been obtained by analyzing the atomic pair distribution function. An attempt has been made in the present work to utilize the X-ray powder data sets to refine the structure and electron density distribution using the currently available versatile methods, MEM, multipole analysis and determination of pair distribution function for these two systems.
Multipole analysis of IceCube data to search for dark matter accumulated in the Galactic halo
Aartsen, M G; Adams, J; Aguilar, J A; Ahlers, M; Ahrens, M; Altmann, D; Anderson, T; Arguelles, C; Arlen, T C; Auffenberg, J; Bai, X; Barwick, S W; Baum, V; Beatty, J J; Tjus, J Becker; Becker, K -H; BenZvi, S; Berghaus, P; Berley, D; Bernardini, E; Bernhard, A; Besson, D Z; Binder, G; Bindig, D; Bissok, M; Blaufuss, E; Blumenthal, J; Boersma, D J; Bohm, C; Bos, F; Bose, D; Böser, S; Botner, O; Brayeur, L; Bretz, H -P; Brown, A M; Casey, J; Casier, M; Chirkin, D; Christov, A; Christy, B; Clark, K; Classen, L; Clevermann, F; Coenders, S; Cowen, D F; Silva, A H Cruz; Danninger, M; Daughhetee, J; Davis, J C; Day, M; de André, J P A M; De Clercq, C; De Ridder, S; Desiati, P; de Vries, K D; de With, M; DeYoung, T; Díaz-Vélez, J C; Dunkman, M; Eagan, R; Eberhardt, B; Eichmann, B; Eisch, J; Euler, S; Evenson, P A; Fadiran, O; Fazely, A R; Fedynitch, A; Feintzeig, J; Felde, J; Feusels, T; Filimonov, K; Finley, C; Fischer-Wasels, T; Flis, S; Franckowiak, A; Frantzen, K; Fuchs, T; Gaisser, T K; Gallagher, J; Gerhardt, L; Gier, D; Gladstone, L; Glüsenkamp, T; Goldschmidt, A; Golup, G; Gonzalez, J G; Goodman, J A; Góra, D; Grandmont, D T; Grant, D; Gretskov, P; Groh, J C; Groß, A; Ha, C; Haack, C; Ismail, A Haj; Hallen, P; Hallgren, A; Halzen, F; Hanson, K; Hebecker, D; Heereman, D; Heinen, D; Helbing, K; Hellauer, R; Hellwig, D; Hickford, S; Hill, G C; Hoffman, K D; Hoffmann, R; Homeier, A; Hoshina, K; Huang, F; Huelsnitz, W; Hulth, P O; Hultqvist, K; Hussain, S; Ishihara, A; Jacobi, E; Jacobsen, J; Jagielski, K; Japaridze, G S; Jero, K; Jlelati, O; Jurkovic, M; Kaminsky, B; Kappes, A; Karg, T; Karle, A; Kauer, M; Kelley, J L; Kheirandish, A; Kiryluk, J; Kläs, J; Klein, S R; Köhne, J -H; Kohnen, G; Kolanoski, H; Koob, A; Köpke, L; Kopper, C; Kopper, S; Koskinen, D J; Kowalski, M; Kriesten, A; Krings, K; Kroll, G; Kroll, M; Kunnen, J; Kurahashi, N; Kuwabara, T; Labare, M; Larsen, D T; Larson, M J; Lesiak-Bzdak, M; Leuermann, M; Leute, J; Lünemann, J; Macías, O; Madsen, J; Maggi, G; Maruyama, R; Mase, K; Matis, H S; McNally, F; Meagher, K; Medici, M; Meli, A; Meures, T; Miarecki, S; Middell, E; Middlemas, E; Milke, N; Miller, J; Mohrmann, L; Montaruli, T; Morse, R; Nahnhauer, R; Naumann, U; Niederhausen, H; Nowicki, S C; Nygren, D R; Obertacke, A; Odrowski, S; Olivas, A; Omairat, A; O'Murchadha, A; Palczewski, T; Paul, L; Penek, Ö; Pepper, J A; Heros, C Pérez de los; Pfendner, C; Pieloth, D; Pinat, E; Posselt, J; Price, P B; Przybylski, G T; Pütz, J; Quinnan, M; Rädel, L; Rameez, M; Rawlins, K; Redl, P; Rees, I; Reimann, R; Resconi, E; Rhode, W; Richman, M; Riedel, B; Robertson, S; Rodrigues, J P; Rongen, M; Rott, C; Ruhe, T; Ruzybayev, B; Ryckbosch, D; Saba, S M; Sander, H -G; Sandroos, J; Santander, M; Sarkar, S; Schatto, K; Scheriau, F; Schmidt, T; Schmitz, M; Schoenen, S; Schöneberg, S; Schönwald, A; Schukraft, A; Schulte, L; Schulz, O; Seckel, D; Sestayo, Y; Seunarine, S; Shanidze, R; Sheremata, C; Smith, M W E; Soldin, D; Spiczak, G M; Spiering, C; Stamatikos, M; Stanev, T; Stanisha, N A; Stasik, A; Stezelberger, T; Stokstad, R G; Stößl, A; Strahler, E A; Ström, R; Strotjohann, N L; Sullivan, G W; Taavola, H; Taboada, I; Tamburro, A; Tepe, A; Ter-Antonyan, S; Terliuk, A; Tešić, G; Tilav, S; Toale, P A; Tobin, M N; Tosi, D; Tselengidou, M; Unger, E; Usner, M; Vallecorsa, S; van Eijndhoven, N; Vandenbroucke, J; van Santen, J; Vehring, M; Voge, M; Vraeghe, M; Walck, C; Wallraff, M; Weaver, Ch; Wellons, M; Wendt, C; Westerhoff, S; Whelan, B J; Whitehorn, N; Wichary, C; Wiebe, K; Wiebusch, C H; Williams, D R; Wissing, H; Wolf, M; Wood, T R; Woschnagg, K; Xu, D L; Xu, X W; Yanez, J P; Yodh, G; Yoshida, S; Zarzhitsky, P; Ziemann, J; Zierke, S; Zoll, M
2014-01-01
Dark matter which is bound in the Galactic halo might self-annihilate and produce a flux of stable final state particles, e.g. high energy neutrinos. These neutrinos can be detected with IceCube, a cubic-kilometer sized Cherenkov detector. Given IceCube's large field of view, a characteristic anisotropy of the additional neutrino flux is expected. In this paper we describe a multipole method to search for such a large-scale anisotropy in IceCube data. This method uses the expansion coefficients of a multipole expansion of neutrino arrival directions and incorporates signal-specific weights for each expansion coefficient. We apply the technique to a high-purity muon neutrino sample from the Northern Hemisphere. The final result is compatible with the null-hypothesis. As no signal was observed, we present limits on the self-annihilation cross-section averaged over the relative velocity distribution $\\langle\\sigma v\\rangle$ down to $1.9\\cdot 10^{-23}\\,\\mathrm{cm}^3\\mathrm{s}^{-1}$ for a dark matter particle mass...
Wang, Han; Nakamura, Haruki; Fukuda, Ikuo
2016-03-21
We performed extensive and strict tests for the reliability of the zero-multipole (summation) method (ZMM), which is a method for estimating the electrostatic interactions among charged particles in a classical physical system, by investigating a set of various physical quantities. This set covers a broad range of water properties, including the thermodynamic properties (pressure, excess chemical potential, constant volume/pressure heat capacity, isothermal compressibility, and thermal expansion coefficient), dielectric properties (dielectric constant and Kirkwood-G factor), dynamical properties (diffusion constant and viscosity), and the structural property (radial distribution function). We selected a bulk water system, the most important solvent, and applied the widely used TIP3P model to this test. In result, the ZMM works well for almost all cases, compared with the smooth particle mesh Ewald (SPME) method that was carefully optimized. In particular, at cut-off radius of 1.2 nm, the recommended choices of ZMM parameters for the TIP3P system are α ≤ 1 nm(-1) for the splitting parameter and l = 2 or l = 3 for the order of the multipole moment. We discussed the origin of the deviations of the ZMM and found that they are intimately related to the deviations of the equilibrated densities between the ZMM and SPME, while the magnitude of the density deviations is very small.
Directory of Open Access Journals (Sweden)
Junqiang Lou
2017-03-01
Full Text Available This paper presents experimental identification and vibration suppression of a flexible manipulator with piezoelectric actuators and strain sensors using optimal multi-poles placement control. To precisely identify the system model, a reduced order transfer function with relocated zeros is proposed, and a first-order inertia element is added to the model. Comparisons show the identified model match closely with the experimental results both in the time and frequency domains, and a fit of 97.2% is achieved. Based on the identified model, a full-state multi-poles placement controller is designed, and the optimal locations of the closed loop poles are determined where the move distance of the closed loop poles is the shortest. The feasibility of the proposed controller is validated by simulations. Moreover, the controller is tested for different locations of the closed loop poles, and an excellent performance of the optimal locations of the closed loop poles is shown. Finally, the effectiveness of the proposed controller is demonstrated by experiments. Results show that the vibrations of the expected modes are significantly diminished. Accordingly, multi-mode vibrations of the manipulator are well attenuated.
Wang, Han; Nakamura, Haruki; Fukuda, Ikuo
2016-03-01
We performed extensive and strict tests for the reliability of the zero-multipole (summation) method (ZMM), which is a method for estimating the electrostatic interactions among charged particles in a classical physical system, by investigating a set of various physical quantities. This set covers a broad range of water properties, including the thermodynamic properties (pressure, excess chemical potential, constant volume/pressure heat capacity, isothermal compressibility, and thermal expansion coefficient), dielectric properties (dielectric constant and Kirkwood-G factor), dynamical properties (diffusion constant and viscosity), and the structural property (radial distribution function). We selected a bulk water system, the most important solvent, and applied the widely used TIP3P model to this test. In result, the ZMM works well for almost all cases, compared with the smooth particle mesh Ewald (SPME) method that was carefully optimized. In particular, at cut-off radius of 1.2 nm, the recommended choices of ZMM parameters for the TIP3P system are α ≤ 1 nm-1 for the splitting parameter and l = 2 or l = 3 for the order of the multipole moment. We discussed the origin of the deviations of the ZMM and found that they are intimately related to the deviations of the equilibrated densities between the ZMM and SPME, while the magnitude of the density deviations is very small.
Bertinelli, F; Berthollon-Vitte, S; Glaude, D; Vanenkov, I
2006-01-01
The quality control implemented at all LHC dipole assemblers includes precise mechanical measurements of the geometry of collared coils. A cross-analysis performed between mechanical and magnetic measurements data shows a correlation between collared coils outer dimensions and the normal quadrupole multipole (b2) for one dipole assembler. The profile geometry of the single collars - as determined from 3D measurements at the collar suppliers and CERN - could not account alone for the significant left â right aperture asymmetry observed. This triggered a deeper investigation on different elements of the geometry of single collars. The results of this work show that the relative positioning of the collaring holes, allowing a small bending deformation of collars under the effect of coil pre-stress, is an important effect that generates a b2 multipole at the limit of specification. The study has deepened the understanding of the factors affecting collared coil geometry and field quality. The precision of 3D m...
Institute of Scientific and Technical Information of China (English)
LIU Yong; HAO Shuang-hui; HAO Ming-hui
2009-01-01
We developed a novel absolute multi-pole encoder structure to improve the resolution of the multi-pole encoder, realize absolute output and reduce the manufacturing cost of the encoder. The structure includes two ring alnicos defined as index track and sub-division track, respectively. The index track is magnetized based on the improved gray code, with linear halls placed around the track evenly. The outputs of linear halls show the region the rotor belongs to. The sub-division track is magnetized to N-S-N-S (north-south-north-south), and the number of N-S pole pairs is determined by the index track. Three linear hall sensors with an air-gap of 2 mm are used to translate the magnetic filed to voltage signals. The relative offset in a single N-S is obtained through look-up. The magnetic encoder is calibrated using a higher-resolution incremental optical encoder. The pulse output from the optical encoder and hall signals from the magnetic encoder are sampled at the same time and transmitted to a computer, and the relation between them is calculated, and stored in the FLASH of MCU (micro controller unit) for look-up. In the working state, the absolute angle is derived by looking-up with hall signals. The structure is simple and the manufacturing cost is very low and suitable for mass production.
Fasting: Molecular Mechanisms and Clinical Applications
Longo, Valter D.; Mattson, Mark P.
2014-01-01
Fasting has been practiced for millennia, but only recently studies have shed light on its role in adaptive cellular responses that reduce oxidative damage and inflammation, optimize energy metabolism and bolster cellular protection. In lower eukaryotes, chronic fasting extends longevity in part by reprogramming metabolic and stress resistance pathways. In rodents intermittent or periodic fasting protects against diabetes, cancers, heart disease and neurodegeneration, while in humans it helps reduce obesity, hypertension, asthma and rheumatoid arthritis. Thus, fasting has the potential to delay aging and help prevent and treat diseases while minimizing the side effects caused by chronic dietary interventions. PMID:24440038
Fast and Parallel Spectral Transform Algorithms for Global Shallow Water Models
Jakob, Ruediger
1993-01-01
This dissertation examines spectral transform algorithms for the solution of the shallow water equations on the sphere and studies their implementation and performance on shared memory vector multiprocessors. Beginning with the standard spectral transform algorithm in vorticity divergence form and its implementation in the Fortran based parallel programming language Force, two modifications are researched. First, the transforms and matrices associated with the meridional derivatives of the associated Legendre functions are replaced by corresponding operations with the spherical harmonic coefficients. Second, based on the fast Fourier transform and the fast multipole method, a lower complexity algorithm is derived that uses fast transformations between Legendre and interior Fourier nodes, fast surface spherical truncation and a fast spherical Helmholtz solver. The first modification is fully implemented, and comparative performance data are obtained for varying resolution and number of processes, showing a significant storage saving and slightly reduced execution time on a Cray Y -MP 8/864. The important performance parameters for the spectral transform algorithm and its implementation on vector multiprocessors are determined and validated with the measured performance data. The second modification is described at the algorithmic level, but only the novel fast surface spherical truncation algorithm is implemented. This new multipole algorithm has lower complexity than the standard algorithm, and requires asymptotically only order N ^2log N operations per time step for a grid with order N^2 points. Because the global shallow water equations are similar to the horizontal dynamical component of general circulation models, the results can be applied to spectral transform numerical weather prediction and climate models. In general, the derived algorithms may speed up the solution of time dependent partial differential equations in spherical geometry. A performance model
1986-01-01
FastCart est un logiciel destiné à l'enseignement de la géographie. Il permet aux élèves de créer leurs propres documents d'études: histogrammes, cartes en hachures, cartes de classification de l'espace. Sa rapidité d'exécution et sa facilité d'utilisation en font un outil adapté aux exigences des enseignants.
Indian Academy of Sciences (India)
Adya Prasad Mishra; T K Balasubramanian
2001-10-01
Rovibrational matrix elements of the multipole moments ℓ up to rank 10 and of the linear polarizability of the H2 molecule in the condensed phase have been computed taking into account the effect of the intermolecular potential. Comparison with gas phase matrix elements shows that the effect of solid state interactions is marginal.
Meichsner, J
2015-01-01
Perturbations of satellite orbits in the gravitational field of a body with a mass monopole and arbitrary spin multipole moments are considered for an axisymmetric and stationary situation. Periodic and secular effects caused by the central gravitomagnetic field are derived by a first order perturbation theory. For a central spin-dipole field these results reduce to the well known Lense-Thirring effects.
Souza, R de Melo e; Farina, C; Moriconi, M
2008-01-01
We show how to obtain the first multipole contributions to the electromagnetic radiation emited by an arbitrary localized source directly from the Jefimenko equation for the magnetic field and the Panofsky-Phillips equation for the electric field. This procedure avoids the unnecessary calculation of the electromagnetic potentials.
de Melo e Souza, R.; Cougo-Pinto, M. V.; Farina, C.; Moriconi, M.
2009-01-01
We show how to obtain the first multipole contributions to the electromagnetic radiation emitted by an arbitrary localized source directly from the Jefimenko equation for the magnetic field and the Panofsky-Phillips equation for the electric field. This procedure avoids the unnecessary calculation of the electromagnetic potentials.
Quantifying the adaptive cycle
Angeler, David G.; Allen, Craig R.; Garmestani, Ahjond S.; Gunderson, Lance H.; Hjerne, Olle; Winder, Monika
2015-01-01
The adaptive cycle was proposed as a conceptual model to portray patterns of change in complex systems. Despite the model having potential for elucidating change across systems, it has been used mainly as a metaphor, describing system dynamics qualitatively. We use a quantitative approach for testing premises (reorganisation, conservatism, adaptation) in the adaptive cycle, using Baltic Sea phytoplankton communities as an example of such complex system dynamics. Phytoplankton organizes in recurring spring and summer blooms, a well-established paradigm in planktology and succession theory, with characteristic temporal trajectories during blooms that may be consistent with adaptive cycle phases. We used long-term (1994–2011) data and multivariate analysis of community structure to assess key components of the adaptive cycle. Specifically, we tested predictions about: reorganisation: spring and summer blooms comprise distinct community states; conservatism: community trajectories during individual adaptive cycles are conservative; and adaptation: phytoplankton species during blooms change in the long term. All predictions were supported by our analyses. Results suggest that traditional ecological paradigms such as phytoplankton successional models have potential for moving the adaptive cycle from a metaphor to a framework that can improve our understanding how complex systems organize and reorganize following collapse. Quantifying reorganization, conservatism and adaptation provides opportunities to cope with the intricacies and uncertainties associated with fast ecological change, driven by shifting system controls. Ultimately, combining traditional ecological paradigms with heuristics of complex system dynamics using quantitative approaches may help refine ecological theory and improve our understanding of the resilience of ecosystems.
Directory of Open Access Journals (Sweden)
Daniel J Kuster
Full Text Available Theoretical and experimental evidence for non-linear hydrogen bonds in protein helices is ubiquitous. In particular, amide three-centered hydrogen bonds are common features of helices in high-resolution crystal structures of proteins. These high-resolution structures (1.0 to 1.5 Å nominal crystallographic resolution position backbone atoms without significant bias from modeling constraints and identify Φ = -62°, ψ = -43 as the consensus backbone torsional angles of protein helices. These torsional angles preserve the atomic positions of α-β carbons of the classic Pauling α-helix while allowing the amide carbonyls to form bifurcated hydrogen bonds as first suggested by Némethy et al. in 1967. Molecular dynamics simulations of a capped 12-residue oligoalanine in water with AMOEBA (Atomic Multipole Optimized Energetics for Biomolecular Applications, a second-generation force field that includes multipole electrostatics and polarizability, reproduces the experimentally observed high-resolution helical conformation and correctly reorients the amide-bond carbonyls into bifurcated hydrogen bonds. This simple modification of backbone torsional angles reconciles experimental and theoretical views to provide a unified view of amide three-centered hydrogen bonds as crucial components of protein helices. The reason why they have been overlooked by structural biologists depends on the small crankshaft-like changes in orientation of the amide bond that allows maintenance of the overall helical parameters (helix pitch (p and residues per turn (n. The Pauling 3.6(13 α-helix fits the high-resolution experimental data with the minor exception of the amide-carbonyl electron density, but the previously associated backbone torsional angles (Φ, Ψ needed slight modification to be reconciled with three-atom centered H-bonds and multipole electrostatics. Thus, a new standard helix, the 3.6(13/10-, Némethy- or N-helix, is proposed. Due to the use of
Kuster, Daniel J; Liu, Chengyu; Fang, Zheng; Ponder, Jay W; Marshall, Garland R
2015-01-01
Theoretical and experimental evidence for non-linear hydrogen bonds in protein helices is ubiquitous. In particular, amide three-centered hydrogen bonds are common features of helices in high-resolution crystal structures of proteins. These high-resolution structures (1.0 to 1.5 Å nominal crystallographic resolution) position backbone atoms without significant bias from modeling constraints and identify Φ = -62°, ψ = -43 as the consensus backbone torsional angles of protein helices. These torsional angles preserve the atomic positions of α-β carbons of the classic Pauling α-helix while allowing the amide carbonyls to form bifurcated hydrogen bonds as first suggested by Némethy et al. in 1967. Molecular dynamics simulations of a capped 12-residue oligoalanine in water with AMOEBA (Atomic Multipole Optimized Energetics for Biomolecular Applications), a second-generation force field that includes multipole electrostatics and polarizability, reproduces the experimentally observed high-resolution helical conformation and correctly reorients the amide-bond carbonyls into bifurcated hydrogen bonds. This simple modification of backbone torsional angles reconciles experimental and theoretical views to provide a unified view of amide three-centered hydrogen bonds as crucial components of protein helices. The reason why they have been overlooked by structural biologists depends on the small crankshaft-like changes in orientation of the amide bond that allows maintenance of the overall helical parameters (helix pitch (p) and residues per turn (n)). The Pauling 3.6(13) α-helix fits the high-resolution experimental data with the minor exception of the amide-carbonyl electron density, but the previously associated backbone torsional angles (Φ, Ψ) needed slight modification to be reconciled with three-atom centered H-bonds and multipole electrostatics. Thus, a new standard helix, the 3.6(13/10)-, Némethy- or N-helix, is proposed. Due to the use of constraints from
Institute of Scientific and Technical Information of China (English)
Dilip Das
2015-01-01
There is a large class of problems in the field of fluid structure interaction where higher-order boundary conditions arise for a second-order partial differential equation. Various methods are being used to tackle these kind of mixed boundary-value problems associated with the Laplace’s equation (or Helmholtz equation) arising in the study of waves propagating through solids or fluids. One of the widely used methods in wave structure interaction is the multipole expansion method. This expansion involves a general combination of a regular wave, a wave source, a wave dipole and a regular wave-free part. The wave-free part can be further expanded in terms of wave-free multipoles which are termed as wave-free potentials. These are singular solutions of Laplace’s equation or two-dimensional Helmholz equation. Construction of these wave-free potentials and multipoles are presented here in a systematic manner for a number of situations such as two-dimensional non-oblique and oblique waves, three dimensional waves in two-layer fluid with free surface condition with higher order partial derivative are considered. In particular, these are obtained taking into account of the effect of the presence of surface tension at the free surface and also in the presence of an ice-cover modelled as a thin elastic plate. Also for limiting case, it can be shown that the multipoles and wave-free potential functions go over to the single layer multipoles and wave-free potential.
Robust Optimal Adaptive Control Method with Large Adaptive Gain
Nguyen, Nhan T.
2009-01-01
In the presence of large uncertainties, a control system needs to be able to adapt rapidly to regain performance. Fast adaptation is referred to the implementation of adaptive control with a large adaptive gain to reduce the tracking error rapidly. However, a large adaptive gain can lead to high-frequency oscillations which can adversely affect robustness of an adaptive control law. A new adaptive control modification is presented that can achieve robust adaptation with a large adaptive gain without incurring high-frequency oscillations as with the standard model-reference adaptive control. The modification is based on the minimization of the Y2 norm of the tracking error, which is formulated as an optimal control problem. The optimality condition is used to derive the modification using the gradient method. The optimal control modification results in a stable adaptation and allows a large adaptive gain to be used for better tracking while providing sufficient stability robustness. Simulations were conducted for a damaged generic transport aircraft with both standard adaptive control and the adaptive optimal control modification technique. The results demonstrate the effectiveness of the proposed modification in tracking a reference model while maintaining a sufficient time delay margin.
Chen, La; Maybeck, Vanessa; Offenhäusser, Andreas; Krause, Hans-Joachim
2016-06-01
We implemented a novel 2D magnetic twisting cytometry (MTC) based on a previously reported multi-pole high permeability electromagnet, in which both the strength and direction of the twisting field can be controlled. Thanks to the high performance twisting electromagnet and the heterodyning technology, the measurement frequency has been extended to the 1 kHz range. In order to obtain high remanence of the ferromagnetic beads, a separate electromagnet with feedback control was adopted for the high magnetic field polarization. Our setup constitutes the first instrument which can be operated both in MTC mode and in magnetic tweezers (MT) mode. In this work, the mechanical properties of HL-1 cardiomyocytes were characterized in MTC mode. Both anisotropy and log-normal distribution of cell stiffness were observed, which agree with our previous results measured in MT mode. The response from these living cells at different frequencies can be fitted very well by the soft glassy rheology model.
Electron Trapping in Multipole Magnet%多极场的电子云俘获效应研究
Institute of Scientific and Technical Information of China (English)
朱雄伟; 国智元
2004-01-01
The electron cloud effect limits the performance of several accelerators with high beam current, such as SLAC and KEK Bfactories, the CERN SPS and the CERN PS. In this paper, the electron trapping in general 2n multipole magnet ( n is integer) isstudied, and we find that there exists electron trapping in the adiabatic region of the multiple magnet ( n＞1 ).%电子云效应限制了几台加速器的高束流密度运行,例如SLAC和KEK的B工厂,CERN的SPS与PS.本文运用辛流形上的1-form李摄动法研究了2n多极场的电子云俘获效应,结果发现在多极磁铁(n＞1)的绝热区存在电子俘获.
Klinkenbusch, Ludger; Brüns, Hendrik
2016-11-01
The paper addresses the combination of the spherical-multipole analysis in sphero-conal coordinates with a uniform complex-source beam (CSB) in order to analyze the scattering of a localized electromagnetic plane wave by any desired part of a perfectly conducting elliptic cone. The concept of uniform CSB is introduced and rigorously applied to the diffraction by a semi-infinite elliptic cone. The analysis takes into account the fact that the incident CSB does not satisfy the radiation condition. A new modal form of the Green's function for the elliptic cone is derived based on the principle that there is no energy loss to infinity. The numerical evaluation includes the scattered far fields of a CSB incident on the corner of a plane angular sector with different opening angles. xml:lang="fr"
Bereau, Tristan
2014-01-01
We estimate polarizabilities of atoms in molecules without electron density, using a Voronoi partitioning approach instead. The resulting atomic dispersion coefficients are calculated, as well as many-body dispersion effects on intermolecular potential energies. We also estimate contributions from multipole electrostatics and compare them to dispersion. We assess the performance of the resulting intermolecular potential from dispersion and electrostatics for more than 1,300 neutral and charged, small organic molecular dimers. Applications to water clusters, the benzene crystal, the anti-cancer drug ellipticine---intercalated between two Watson-Crick DNA base pairs, as well as six macro-molecular host-guest complexes highlight the potential of this method and help to identify points of future improvement. Overall, the method achieves an accuracy well within sophisticated empirical force fields, such as OPLS and Amber FF03, while exhibiting a simple parametrization protocol without the need for experimental inp...
Chattaraj, Swarnabha
2016-01-01
We present an analysis of the optical response of a class of on-chip integrated nano-photonic systems comprising all-dielectric building block based multifunctional light manipulating units (LMU) integrated with quantum dot (QD) light sources. The multiple functions (such as focusing excitation light, QD emission rate enhancement, photon guidance, and lossless propagation) are simultaneously realized using the collective Mie resonances of dipole and higher order multipole modes of the dielectric building blocks (DBBs) constituting a single structural unit, the LMU. Using analytical formulation based on Mie theory we demonstrate enhancement of the excitation light simultaneously with the guiding and propagation of the emitted light from a QD emitter integrated with the DBB based LMU. The QD-DBB integrated structures can serve as the basic element for building nano-optical active circuits for optical information processing in both classical and quantum realms.
Kano, Yoshiaki; Kosaka, Takashi; Matsui, Nobuyuki
This paper presents a simple non-linear magnetic analysis-based optimum design of a multi-pole permanent magnet machine as an assistant design tool of 3D-FEM. The proposed analysis is based on the equivalent magnetic circuit and the air gap permeance model between the stator and rotor teeth of the motor, taking into account the local magnetic saturation in the pointed end of teeth. The availability of the proposed analysis is verified by comparing with 3D-FEM analysis from the standpoints of the torque calculation accuracy for the variations of design free parameter and the computation time. After verification, the proposed analysis-based optimum design of the dimensions of permanent magnet is examined, by which the minimization of magnet volume is realized while keeping torque/current ratio at the specified value.
Energy Technology Data Exchange (ETDEWEB)
Papakonstantinou, P. [Technische Univ. Darmstadt (Germany). Inst. fuer Kernphysik]|[Athens Univ. (Greece). Physics Dept., Nuclear and Particle Physics Section; Mavrommatis, E. [Athens Univ. (Greece). Physics Dept., Nuclear and Particle Physics Section; Wambach, J.; Ponomarev, V.Y. [Technische Univ. Darmstadt (Germany). Inst. fuer Kernphysik
2004-12-20
We have used a self-consistent Skyrme-Hartree-Fock plus continuum-RPA model to study the low-multipole response of stable and neutron/proton-rich Ni and Sn isotopes. We focus on the momentum-transfer dependence of the strength distribution, as it provides information on the structure of excited nuclear states and in particular on the variations of the transition form factor (TFF) with the energy. Our results show, among other things, that the TFF may show significant energy dependence in the region of the isoscalar giant monopole resonance and that the TFF corresponding to the threshold strength in the case of neutron-rich nuclei is different compared to the one corresponding to the respective giant resonance. Perspectives are given for more detailed future investigations. (orig.)
Friedrichs, Michael; Brinkmann, Ralf Peter; Oberrath, Jens
2016-09-01
Measuring plasma parameters, e.g. electron density and electron temperature, is an important procedure to verify the stability and behavior of a plasma process. For this purpose the multipole resonance probe (MRP) represents a satisfying solution to measure the electron density. However the influence of the probe on the plasma through its physical presence makes it unattractive for some processes in industrial application. A solution to combine the benefits of the spherical MRP with the ability to integrate the probe into the plasma reactor is introduced by the planar model of the MRP. By coupling the model of the cold plasma with the maxwell equations for electrostatics an analytical model for the admittance of the plasma is derivated, adjusted to cylindrical geometry and solved analytically for the planar MRP using functional analytic methods.
Burt, Eric A.; Tjoelker, R. L.
2007-01-01
A recent long-term comparison between the compensated multi-pole Linear Ion Trap Standard (LITS) and the laser-cooled primary standards via GPS carrier phase time transfer showed a deviation of less than 2.7x10(exp -17)/day. A subsequent evaluation of potential drift contributors in the LITS showed that the leading candidates are fluctuations in background gases and the neon buffer gas. The current vacuum system employs a "flow-through" turbomolecular pump and a diaphragm fore pump. Here we consider the viability of a "sealed" vacuum system pumped by a non-evaporable getter for long-term ultra-stable clock operation. Initial tests suggests that both further stability improvement and longer mean-time-between-maintenance can be achieved using this approach
Chang, Zhe; Wang, Sai; Li, Xin
2011-01-01
Confirmed by the WMAP 7-year results, the quadrupole $C_{\\ell}(\\ell=2)$ moment of the angular power spectrum of the Cosmic Microwave Background(CMB) temperature fluctuations has an anomalously low amplitude compared to the prediction of the standard inflationary scenario and the $\\Lambda$-CDM model. In this paper, we try to take into account the effect of a cosmological-constant type dark energy during the inflation period in the early universe. This is accommodated by a new dispersion relation in a four dimensional de Sitter space, i.e. $\\omega^2= k^2+\\epsilon^{*2}_{\\gamma}$. A modified inflation model of a minimally-coupled scalar field is proposed as a possible dark-energy explanation of the low-$\\ell$ multipole suppression of the CMB spectrum. For $\\epsilon^{*2}_{\\gamma}\\sim 10^{-5} (\\textmd{GeV}^2)$, a smaller theoretical value of $C_{\\ell}(\\ell=2)$ is obtained.
DEFF Research Database (Denmark)
Hansen, Anca Daniela; Michalke, G.
2009-01-01
. A control strategy is presented, which enhances the fault ride-through and voltage support capability of such wind turbines during grid faults. Its design has special focus on power converters' protection and voltage control aspects. The performance of the presented control strategy is assessed......Emphasis in this paper is on the fault ride-through and grid support capabilities of multi-pole permanent magnet synchronous generator (PMSG) wind turbines with a full-scale frequency converter. These wind turbines are announced to be very attractive, especially for large offshore wind farms...... and discussed by means of simulations with the use of a transmission power system generic model developed and delivered by the Danish Transmission System Operator Energinet.dk. The simulation results show how a PMSG wind farm equipped with an additional voltage control can help a nearby active stall wind farm...
Energy Technology Data Exchange (ETDEWEB)
Machicoane, Nathanaël; Cortet, Pierre-Philippe; Moisy, Frédéric [Laboratoire FAST, CNRS, Université Paris-Sud, Orsay (France); Voisin, Bruno [Laboratoire LEGI, CNRS, Université Grenoble Alpes, Grenoble (France)
2015-06-15
We analyze theoretically and experimentally the far-field viscous decay of a two-dimensional inertial wave beam emitted by a harmonic line source in a rotating fluid. By identifying the relevant conserved quantities along the wave beam, we show how the beam structure and decay exponent are governed by the multipole order of the source. Two wavemakers are considered experimentally, a pulsating and an oscillating cylinder, aiming to produce a monopole and a dipole source, respectively. The relevant conserved quantity which discriminates between these two sources is the instantaneous flow rate along the wave beam, which is non-zero for the monopole and zero for the dipole. For each source, the beam structure and decay exponent, measured using particle image velocimetry, are in good agreement with the predictions.
Machicoane, Nathanaël; Voisin, Bruno; Moisy, Frédéric
2015-01-01
We analyze theoretically and experimentally the far-field viscous decay of a two-dimensional inertial wave beam emitted by a harmonic line source in a rotating fluid. By identifying the relevant conserved quantities along the wave beam, we show how the beam structure and decay exponent are governed by the multipole order of the source. Two wavemakers are considered experimentally, a pulsating and an oscillating cylinder, aiming to produce a monopole and a dipole source, respectively. The relevant conserved quantity which discriminates between these two sources is the instantaneous flowrate along the wave beam, which is non-zero for the monopole and zero for the dipole. For each source the beam structure and decay exponent, measured using particle image velocimetry, are in good agreement with the predictions.
Beck, A V Anisovich R; Gottschall, M; Hartmann, J; Kashevarov, V; Klempt, E; Meißner, Ulf-G; Nikonov, V; Ostrick, M; Rönchen, D; Sarantsev, A; Strakovsky, I; Thiel, A; Tiator, L; Thoma, U; Workman, R; Wunderlich, Y
2016-01-01
New data on pion-photoproduction off the proton have been included in the partial wave analyses Bonn-Gatchina and SAID and in the dynamical coupled-channel approach J\\"ulich-Bonn. All reproduce the recent new data well: the double polarization data for E, G, H, P and T in $\\gamma p \\to \\pi^0 p$ from ELSA, the beam asymmetry $\\Sigma$ for $\\gamma p \\to \\pi^0 p$ and $\\pi^+ n$ from Jefferson Laboratory, and the precise new differential cross section and beam asymmetry data $\\Sigma$ for $\\gamma p \\to \\pi^0 p$ from MAMI. The new fit results for the multipoles are compared with predictions not taking into account the new data. The mutual agreement is improved considerably but still far from being perfect.
Sullivan, M.; Caspi, S.; Forest, E.; Robin, D.; Zholents, A.; Cai, Y.; Destaebler, H.; Donald, M.; Helm, R.; Irwin, J.
1994-06-01
The low-energy beam of the proposed PEP-II B factory enters the first quadrupole (Q1) after the interaction point off axis in order to separate the low-energy beam from the high-energy beam. The off-axis beam orbit in Q1 gives rise to significant feed-down terms from higher multipoles that originate from systematic effects and random fabrication errors. The authors study superconducting and permanent magnet designs of Q1, and look at the effect these different designs have on the dynamic aperture. Including a dipole field in a superconducting design allows one to offset the magnetic axis from the mechanical axis, thereby maintaining the separation of the beams while greatly reducing the feed-down effect. They illustrate relevant points of the discussion with tracking results for the PEP-II low-energy ring.