Parasites as biological tags of divergence in Central European gudgeon populations (Actinopterygii: Cyprinidae: Gobioninae)

Czech Academy of Sciences Publication Activity Database

Kvach, Yuriy; Ondračková, Markéta; Bryjová, Anna; Jurajda, Pavel

2017-01-01

Roč. 72, č. 6 (2017), s. 671-679 ISSN 0006-3088 R&D Projects: GA ČR(CZ) GBP505/12/G112 Institutional support: RVO:68081766 Keywords : Gobio * Romanogobio * sympatric species * parasite community * biological tags Subject RIV: EG - Zoology OBOR OECD: Zoology Impact factor: 0.759, year: 2016

From Late Miocene to Holocene: processes of differentiation within the Telestes genus (Actinopterygii: Cyprinidae.

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Vincent Dubut

Full Text Available Investigating processes and timing of differentiation of organisms is critical in the understanding of the evolutionary mechanisms involved in microevolution, speciation, and macroevolution that generated the extant biodiversity. From this perspective, the Telestes genus is of special interest: the Telestes species have a wide distribution range across Europe (from the Danubian district to Mediterranean districts and have not been prone to translocation. Molecular data (mtDNA: 1,232 bp including the entire Cyt b gene; nuclear genome: 11 microsatellites were gathered from 34 populations of the Telestes genus, almost encompassing the entire geographic range. Using several phylogenetic and molecular dating methods interpreted in conjunction with paleoclimatic and geomorphologic evidence, we investigated the processes and timing of differentiation of the Telestes lineages. The observed genetic structure and diversity were largely congruent between mtDNA and microsatellites. The Messinian Salinity Crisis (Late Miocene seems to have played a major role in the speciation processes of the genus. Focusing on T. souffia, a species occurring in the Danube and Rhone drainages, we were able to point out several specific events from the Pleistocene to the Holocene that have likely driven the differentiation and the historical demography of this taxon. This study provides support for an evolutionary history of dispersal and vicariance with unprecedented resolution for any freshwater fish in this region.

The Significance of Protein Components in Heterogeneous Eggs for Embrionic Development and Larvas Persistence of Cyprinidae

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Zalepukhin Valeriy Vladimirovich

2014-12-01

Full Text Available Endogenous heterogeneity of females and their eggs is one of the most important factors of annual generation’s formation in nature-spawn and incubative centers. Its assessment is significant for comprehending the notion of biochemical changes in proximate prespawn period. Between the shares of egg’s biochemical composition of Cyprinidae species only protein and b-lipoproteids levels are incovering constant and authentic correlations with embrionic development and larval survival in the conditions of artificial reproduction. The promotion of protein’s level to 20 – 24 % (in wet weigth in percolating eggs positively affects the fertilization and larvae vitality. This trend is fair for the domesticated and nature-spawn fish. The same significance is important for the b-lipoproteids level in ovular eggs of grass carp (Ctenopharyngodon idella Val.. The optimal concentration is 100-200 mg % in wet weight.

The food of roach, Rutilus rutilus (Actinopterygii: Cypriniformes: Cyprinidae), in a biomanipulated water supply reservoir

Czech Academy of Sciences Publication Activity Database

Zapletal, T.; Mareš, J.; Jurajda, Pavel; Všetičková, Lucie

2014-01-01

Roč. 44, č. 1 (2014), s. 15-22 ISSN 0137-1592 R&D Projects: GA ČR GBP505/12/G112 Institutional support: RVO:68081766 Keywords : diet analysis * gut * biomanipulation * age groups Subject RIV: EG - Zoology Impact factor: 0.577, year: 2014 http://www.aiep.pl/volumes/2010/5_1/pdf/03_1421_F1.pdf

Phylogeography of Schizopygopsis stoliczkai (Cyprinidae) in Northwest Tibetan Plateau area.

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Wanghe, Kunyuan; Tang, Yongtao; Tian, Fei; Feng, Chenguang; Zhang, Renyi; Li, Guogang; Liu, Sijia; Zhao, Kai

2017-11-01

Schizopygopsis stoliczkai (Cyprinidae, subfamily Schizothoracinae) is one of the major freshwater fishes endemic to the northwestern margin of the Tibetan Plateau. In the current study, we used mitochondrial DNA markers cytochrome b (Cyt b ) and 16S rRNA (16S), as well as the nuclear marker, the second intron of the nuclear beta-actin gene (Act2), to uncover the phylogeography of S. stoliczkai . In total, we obtained 74 haplotypes from 403 mitochondrial concatenated sequences. The mtDNA markers depict the phylogenetic structures of S. stoliczkai , which consist of clade North and clade South. The split time of the two clades is dated back to 4.27 Mya (95% HPD = 1.96-8.20 Mya). The estimated split time is earlier than the beginning of the ice age of Pleistocene (2.60 Mya), suggesting that the northwestern area of the Tibetan Plateau probably contain at least two glacial refugia for S. stoliczkai . SAMOVA supports the formation of four groups: (i) the Karakash River group; (ii) The Lake Pangong group; (iii) the Shiquan River group; (iv) the Southern Basin group. Clade North included Karakash River, Lake Pangong, and Shiquan River groups, while seven populations of clade South share the haplotypes. Genetic diversity, star-like network, BSP analysis, as well as negative neutrality tests indicate recent expansions events of S. stoliczkai . Conclusively, our results illustrate the phylogeography of S. stoliczkai , implying the Shiquan River is presumably the main refuge for S. stoliczkai .

Phenotypic differentiation of Barilius bendelisis (Cypriniformes: Cyprinidae) in four rivers from Central Indian Himalaya.

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Mir, Javaid Iqbal; Saxena, Neha; Patiyal, Rabindar Singh; Sahoo, Prabhati Kumari

2015-03-01

Barilius bendelisis, commonly known as Indian Hill Trout is an upland water fish of South East Asia. It belongs to the family Cyprinidae and dwells in shallow, clear and cold water. In this study, the intraspecific variation of Barilius bendelisis, on the basis of morphometric characters, was investigated. Altogether, 402 specimens were collected from four rivers in the Central Indian Himalaya. A truss network was constructed by interconnecting 12 landmarks to yield 30 distance variables that were extracted from digital images of specimens using tpsDig2 and PAST software. Allometric transformed truss measurements were subjected to univariate analysis of variance, factor analysis and discriminant analysis. All variables exhibited significant differences between the populations. Altogether 88% of the specimens were classified into their original populations (81.98% under a 'leave-one-out' procedure). With factor analysis measurements of the head region, the middle portion and the caudal region had high loadings on the first and second axis. The results indicated that B. bendelisis has significant phenotypic heterogeneity between the geographically isolated regions of Central Indian Himalaya. We hypothesize that the marked interspecific variation in B. bendelisis is the result of local ecological conditions.

Taxonomic review of the genus Luciobarbus Heckel, 1843 (Actinopterygii, Cyprinidae from northwestern Morocco with the description of three new species

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Casal-Lopez, Miriam

2015-12-01

Full Text Available The genus Luciobarbus in Morocco presents high diversification, in contrast to the generally impoverished freshwater fish fauna from North Africa. Within Morocco the northern area is one of the least studied territories, due to both its historical background and the limited accessibility of many regions. Previous phylogenetic studies identified Luciobarbus populations that are morphologically and genetically differentiated, to the same extent as others already recognized as separate species. The aim of this work is to describe these populations as distinct species, based on morphological, meristic, and genetic traits. urn:lsid:zoobank.org:pub:8FC4B423-104C-4097-A468-ED3D2664A15AEn Marruecos el género Luciobarbus está altamente diversificado, en comparación con la empobrecida fauna de peces de agua dulce del norte de África. Dentro de Marruecos la región norte es una de las áreas menos estudiadas, por motivos históricos y también por la poca accesibilidad en algunas de sus regiones. Los estudios filogenéticos previos para esta área han señalado la existencia de poblaciones pertenecientes al género Luciobarbus tan diferenciadas morfológica y genéticamente como otras que ya habían sido reconocidas como diferentes especies. En este trabajo describimos estas poblaciones como diferentes taxa, en base a caracteres morfológicos, merísticos y genéticos.

Boom and bust: ancient and recent diversification in bichirs (Polypteridae: Actinopterygii), a relictual lineage of ray-finned fishes.

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Near, Thomas J; Dornburg, Alex; Tokita, Masayoshi; Suzuki, Dai; Brandley, Matthew C; Friedman, Matt

2014-04-01

Understanding the history that underlies patterns of species richness across the Tree of Life requires an investigation of the mechanisms that not only generate young species-rich clades, but also those that maintain species-poor lineages over long stretches of evolutionary time. However, diversification dynamics that underlie ancient species-poor lineages are often hidden due to a lack of fossil evidence. Using information from the fossil record and time calibrated molecular phylogenies, we investigate the history of lineage diversification in Polypteridae, which is the sister lineage of all other ray-finned fishes (Actinopterygii). Despite originating at least 390 million years (Myr) ago, molecular timetrees support a Neogene origin for the living polypterid species. Our analyses demonstrate polypterids are exceptionally species depauperate with a stem lineage duration that exceeds 380 million years (Ma) and is significantly longer than the stem lineage durations observed in other ray-finned fish lineages. Analyses of the fossil record show an early Late Cretaceous (100.5-83.6 Ma) peak in polypterid genus richness, followed by 60 Ma of low richness. The Neogene species radiation and evidence for high-diversity intervals in the geological past suggest a "boom and bust" pattern of diversification that contrasts with common perceptions of relative evolutionary stasis in so-called "living fossils." © 2013 The Author(s). Evolution © 2013 The Society for the Study of Evolution.

Biologie de la reproduction du Cyprinidae, Barbus callensis dans le lac de barrage Hamiz (Algérie

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Ould Rouis, S.

2012-01-01

Full Text Available Reproductive Biology of the Cyprinidae, Barbus callensis in an Algerian Dam. The freshwater fish, Barbus callensis (Valenciennes, 1842 was studied from 2005 to 2007 for the first time in Hamiz dam. This species endemic of North African continent is widely spread in the rivers of Algeria. This reservoir is situated in Boumerdes 35 km southeast of Algiers. During these three years, the monthly sampling was carried out by trammel nets, fishing near the dike during one night. At the same time, the fry was captured with a transparent plastic bottle baited with breadcrumbs put down near the lakeshore. The monthly follow-up of the gonadosomatic ratio (RGS reveals that the spawning period occurred between April and May. The evolution of the condition factor (K shows low seasonal variations. However, a lower value appears in spring when the temperature increases and the breeding begins. The sex ratio is higher for the adult females (1:2.8, more than 26 cm. The first sexual maturity size (L50 is lower for males (19.6 cm than for females (27.7 cm.

Taxonomy of rheophilic Luciobarbus Heckel, 1842 (Actinopterygii, Cyprinidae from Morocco with the description of two new species

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Doadrio, I.

2016-06-01

Full Text Available The genus Luciobarbus Heckel, 1843 is characterized by medium to large fish species occurring in large rivers and downstream zones with slow-moving waters. Remarkably also rheophilic Luciobarbus occur in Morocco, which are of small size and exhibit distinct morphological traits as well as different habitat requirements. These rheophilic species have traditionally been assigned to Luciobarbus nasus (Günther, 1874 and L. magniatlantis (Pellegrin, 1919, although some authors consider L. magniatlant as a junior synonym of L. nasus. This lack of consensus on the taxonomy of rheophilic barbs is constrained by limited population studies that do not encompass their entire distribution range. Using molecular, morphometric, and osteological data we studied populations of rheophilic barbs of three drainage basins in which they are currently present: Tensift, Moulouya and Oum er Rbia. Our results clearly identified the rheophilic barbs of each basin as different species. The species Luciobarbus magniatlantis is a well-recognized species endemic to Tensift Basin. In contrast, the investigated populations from the Moulouya and Oum er Rbia basins could not be assigned to any previously described species. Consequently, we describe two new Luciobarbus species in the Moulouya and Oum er Rbia basins.El género Luciobarbus Heckel, 1843 se caracteriza por presentar especies de medio y gran tamaño que viven en las zonas bajas de grandes ríos con aguas lentas. Singularmente, en Marruecos también existen especies reófilas del género Luciobarbus de pequeño tamaño y que presentan diferentes caracteres morfológicos y distintos requerimientos de hábitat. Estas especies reófilas han sido tradicionalmente asignadas a Luciobarbus nasus (Günther, 1874 y L. magniatlantis (Pellegrin, 1919 aunque algunos autores consideran a L. magniatlantis como un sinónimo de L. nasus. Esta falta de consenso en la taxonomía de los barbos reófilos está limitada por los escasos estudios poblacionales realizados que no abarcan la totalidad del área de distribución de estos barbos. Nosotros, usando datos moleculares, morfométricos y osteológicos, estudiamos las poblaciones de los barbos reófilos de tres cuencas hidrográficas, en las cuales están actualmente presentes: Tensift, Moulouya y Oum er Rbia. Nuestros resultados claramente identifican a los barbos reófilos de cada una de estas cuencas como diferentes especies. La especie L. magniatlantis es una especie bien definida y endémica de la cuenca del Tensift. En contraste, las poblaciones analizadas de las cuencas del Moulouya y Oum er Rbia no pudieron ser asignadas a ninguna especie previamente descrita. Consecuentemente, nosotros describimos dos nuevas especies de Luciobarbus en las cuencas del Moulouya y del Oum er Rbia.

[Ontogenetic Mechanisms of Explosive Morphological Divergence in the Lake Tana (Ethiopia) Species Flock of Large African Barbs (Labeobarbus; Cyprinidae; Teleostei)].

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Shkila, F N; Lazebny, O E; Kapitanova, D V; Abdissa, Belay; Borisov, V B; Smirnov, S V

2015-01-01

Species flock of Lake Tana (Ethiopia) large African barbs (Labeobarbus; Cyprinidae; Teleostei) was studied as a model system for investigating ontogenetic mechanisms of the explosive morphological divergence often accompanying sympatric speciation in bony fishes. Comparative morphological analysis carried out with the use ofgeometric morphometric techniques revealed quantitative differences in the head shapes of species under study. Comparative analysis of skull development revealed significant interspecies differences in the temporal characteristics of craniogenesis in these species. These two lines of evidence suggest that heterochronies in craniogenesis underlie divergence in the head shapes of adult Tana barbs. This prediction was verified via experimental changes of temporal characteristics of craniogenesis in L. intermedius, a putative ancestor for the Lake Tana species flock. For this aim, timing and rate of skull development were changed by artificial manipulation of thyroid hormone levels. In sum, it was shown that it is heterochronies that underlie an explosive morphological divergence of the Lake Tana barbs species flock. Our findings together with those reported in the literature suggest variability in the activity of the hypothalamic-pituitary-thyroid axis to contribute to these heterochronies.

Age at maturity of Mediterranean marine fishes

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A. C. TSIKLIRAS

2014-07-01

Full Text Available In this review we collected data on the age at maturity (tm and maximum reported age (tmax for 235 stocks of Mediterranean marine fishes, belonging to 82 species, 37 families, 12 orders and 2 classes (Actinopterygii and Elasmobranchii. Among Actinopterygii (mean tm ± SD = 2.20 ± 1.43 y, n = 215, tm ranged from 0.3 y, for the common goby Pomatoschistus microps, to 12 y, for dusky grouper Epinephelus marginatus, while among Elasmobranchii (mean tm ± SD = 5.94 ± 2.47 y, n = 20, tm ranged between 2.7 y, for brown ray Raja miraletus, and 12 y for picked dogfish Squalus acanthias. Overall, the tmax ranged between 1 y, for transparent goby Aphia minuta, and 70 y, for wreckfish Polyprion americanus. The mean tmax of Actinopterygii (tmax ± SD = 10.14 ± 9.42 y was lower than that of Elasmobranchii (tmax ± SD = 14.05 ± 8.47 y. The tm exhibited a strong positive linear relation with tmax for both Actinopterygii (logtm = 0.58 ´ logtmax – 0.25, r2 = 0.51, P < 0.001 and Elasmobranchii (logtm = 0.67 ´ logtmax – 0.006, r2 = 0.51, P = 0.007. The mean tm/tmax did not differ significantly with sex within Actinopterygii (ANOVA: F = 0.27, P = 0.60, n = 90; females: mean ± SD = 0.276 ± 0.143; males: mean ± SD = 0.265 ± 0.138 and Elasmobranchii (ANOVA: F = 1.44, P = 0.25, n = 10; females: mean ± SD = 0.499 ± 0.166; males: mean ± SD = 0.418 ± 0.133. Finally, the dimensionless ratio tm/tmax was significantly lower (ANOVA: F = 31.04, P < 0.001 for Actinopterygii (mean ± SD = 0.270 ± 0.135, n = 180 than for Elasmobranchii, (mean ± SD = 0.458 ± 0.152, n = 20, when stocks with combined sexes were excluded from the analysis.

Multiple origins of polyploidy in the phylogeny of southern African barbs (Cyprinidae) as inferred from mtDNA markers.

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Tsigenopoulos, C S; Ráb, P; Naran, D; Berrebi, P

2002-06-01

The cyprinid genus Barbus, with more than 800 nominal species, is an apparently polyphyletic assemblage to which a number of unrelated species, groups and/or assemblages have been assigned. It includes species that exhibit three different ploidy levels: diploid, tetraploid and hexaploid. Several lineages of the family Cyprinidae constitute a major component of the African freshwater ichthyofauna, having about 500 species, and fishes assigned to the genus 'Barbus' have the most species on the continent. We used complete sequences of the mitochondrial cytochrome b gene in order to infer phylogenetic relationships between diploid, tetraploid and hexaploid species of 'Barbus' occurring in southern Africa, the only region where representatives of all of the three ploidy levels occur. The results indicate that most of the lineages are incorrectly classified in the genus 'Barbus'. The southern African tetraploids probably originated from southern African diploids. They constitute a monophyletic group distinct from tetraploids occurring in the Euro-Mediterranean region (Barbus sensu stricto). The 'small' African diploid species seem to be paraphyletic, while the 'large' African hexaploid barbs species are of a single, recent origin and form a monophyletic group. The evidence of multiple, independent origins of polyploidy occurring in the African cyprinine cyprinids thus provides a significant contribution to the knowledge on the systematic diversity of these fishes, and warrants a thorough taxonomic reorganization of the genus.

Phylogeny and biogeography of highly diverged freshwater fish species (Leuciscinae, Cyprinidae, Teleostei) inferred from mitochondrial genome analysis.

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Imoto, Junichi M; Saitoh, Kenji; Sasaki, Takeshi; Yonezawa, Takahiro; Adachi, Jun; Kartavtsev, Yuri P; Miya, Masaki; Nishida, Mutsumi; Hanzawa, Naoto

2013-02-10

The distribution of freshwater taxa is a good biogeographic model to study pattern and process of vicariance and dispersal. The subfamily Leuciscinae (Cyprinidae, Teleostei) consists of many species distributed widely in Eurasia and North America. Leuciscinae have been divided into two phyletic groups, leuciscin and phoxinin. The phylogenetic relationships between major clades within the subfamily are poorly understood, largely because of the overwhelming diversity of the group. The origin of the Far Eastern phoxinin is an interesting question regarding the evolutionary history of Leuciscinae. Here we present phylogenetic analysis of 31 species of Leuciscinae and outgroups based on complete mitochondrial genome sequences to clarify the phylogenetic relationships and to infer the evolutionary history of the subfamily. Phylogenetic analysis suggests that the Far Eastern phoxinin species comprised the monophyletic clades Tribolodon, Pseudaspius, Oreoleuciscus and Far Eastern Phoxinus. The Far Eastern phoxinin clade was independent of other Leuciscinae lineages and was closer to North American phoxinins than European leuciscins. All of our analysis also suggested that leuciscins and phoxinins each constituted monophyletic groups. Divergence time estimation suggested that Leuciscinae species diverged from outgroups such as Tincinae to be 83.3 million years ago (Mya) in the Late Cretaceous and leuciscin and phoxinin shared a common ancestor 70.7 Mya. Radiation of Leuciscinae lineages occurred during the Late Cretaceous to Paleocene. This period also witnessed the radiation of tetrapods. Reconstruction of ancestral areas indicates Leuciscinae species originated within Europe. Leuciscin species evolved in Europe and the ancestor of phoxinin was distributed in North America. The Far Eastern phoxinins would have dispersed from North America to Far East across the Beringia land bridge. The present study suggests important roles for the continental rearrangements during the

A new monozoic tapeworm, Lobulovarium longiovatum n. g., n. sp. (Cestoda: Caryophyllidea), from barbs Puntius spp. (Teleostei: Cyprinidae) in the Indomalayan region.

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Oros, Mikuláš; Ash, Anirban; Brabec, Jan; Kar, Pradip Kumar; Scholz, Tomáš

2012-09-01

A new caryophyllidean cestode is described from barbs Puntius spp. (Cypriniformes: Cyprinidae), with P. sophore (Hamilton) as its type-host, in the Ganges and Brahmaputra river basins in India and Bangladesh, and a new genus, Lobulovarium n. g., is proposed to accommodate it. The genus belongs to the Lytocestidae because its vitelline follicles are situated in the cortex. It is typified by: (i) a peculiar ovary, which is roughly H-shaped, but with asymmetrical, irregular lobes on its ventral and dorsal sides; (ii) an extensive vitellarium formed by numerous vitelline follicles scattered throughout the cortex; (iii) a long, conical postovarian part of the body with numerous vitelline follicles; (iv) a broadly digitate scolex with a slightly protrusible central cone; (v) a single gonopore (male and female genital ducts open via a single pore and a common genital atrium is absent); and (vi) a small number of testes (90 μm in L. longiovatum), which are spherical (length/width ratio 1:1 versus 2.5-3:1 in the new species), and the presence of vitelline follicles alongside the ovarian lobes (almost completely absent in L. longiovatum).

DNA barcoding and evaluation of genetic diversity in Cyprinidae fish in the midstream of the Yangtze River.

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Shen, Yanjun; Guan, Lihong; Wang, Dengqiang; Gan, Xiaoni

2016-05-01

The Yangtze River is the longest river in China and is divided into upstream and mid-downstream regions by the Three Gorges (the natural barriers of the Yangtze River), resulting in a complex distribution of fish. Dramatic changes to habitat environments may ultimately threaten fish survival; thus, it is necessary to evaluate the genetic diversity and propose protective measures. Species identification is the most significant task in many fields of biological research and in conservation efforts. DNA barcoding, which constitutes the analysis of a short fragment of the mitochondrial cytochrome c oxidase subunit I (COI) sequence, has been widely used for species identification. In this study, we collected 561 COI barcode sequences from 35 fish from the midstream of the Yangtze River. The intraspecific distances of all species were below 2% (with the exception of Acheilognathus macropterus and Hemibarbus maculatus). Nevertheless, all species could be unambiguously identified from the trees, barcoding gaps and taxonomic resolution ratio values. Furthermore, the COI barcode diversity was found to be low (≤0.5%), with the exception of H. maculatus (0.87%), A. macropterus (2.02%) and Saurogobio dabryi (0.82%). No or few shared haplotypes were detected between the upstream and downstream populations for ten species with overall nucleotide diversities greater than 0.00%, which indicated the likelihood of significant population genetic structuring. Our analyses indicated that DNA barcoding is an effective tool for the identification of cyprinidae fish in the midstream of the Yangtze River. It is vital that some protective measures be taken immediately because of the low COI barcode diversity.

Analysis of mitochondrial DNA: taxonomic and phylogenetic relationships in two fish taxa (Pisces: Mugilidae and Cyprinidae).

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Semina, A V; Polyakova, N E; Brykov, Vl A

2007-12-01

To solve some systematic questions as well as to study genetic variability and evolutionary relationships in two groups of fish belonging to the Mugilid (Mugilidae) and Cyprinid (Cyprinidae) families, we have used restriction fragment length polymorphism analysis of mitochondrial DNA (mtDNA) fragments amplified in polymerase chain reaction. The analysis of three mtDNA fragments of 7220 bp total length of six Mugilid species has shown that Mediterranean Liza aurata, L. ramada, L. saliens, and Chelon labrosus form a common cluster, L. aurata and C. labrosus being the closest relatives, whereas L. haematocheilus (syn. C. haematocheilus) of the Sea of Japan forms a sister group to the Mediterranean cluster. It was found that Chelon and Liza genera are paraphyletic, and therefore their division into two genera is unnatural and they should be synonymized. According to priority, Liza species should be ascribed to Chelon genus. Mugil cephalus is the most distant compared to the rest of the species studied. The level of genetic divergence between allopatric samples of M. cephalus from the Sea of Japan and the Mediterranean Sea has proved to be very high--4.5% of nucleotide substitutions. The analysis of four mtDNA fragments of 9340 bp total length of six Cyprinid species has shown that L. waleckii is the most genetically distant. Pseudaspius leptocephalus is a sister group to Tribolodon species. All Tribolodon species form a common cluster with T. sachalinensis as a root. The remaining species form two branches, one of which includes T. nakamurai and T. brandtii, another one combines T. hakonensis and a new form of Tribolodon revealed that is close to T. hakonensis by its mtDNA (2.4% of nucleotide substitutions). This new form might be an independent species.

Population dynamics and reproductive biology of Barilius bendelisis (Cyprinidae: Cypriniformes) from river Gaula of Central Indian Himalaya.

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Saxena, Neha; Patiyal, Rabindar Singh; Dube, Kiran; Tiwari, Virendra K

2016-09-01

The Indian hill trout cyprinid, Barilius bendelisis is a member of family Cyprinidae that dwells in shallow, cold, and clear water. In this study, growth parameters and reproductive biology of Indian hill trout, Barilius bendelisis from river Gaula, Central Himalaya region, India, were studied. The length-frequency data were grouped sex wise and were analyzed to determine the growth and mortality parameters using the computer software programme, FAO-ICLARM Stock Assessment Tool (FISAT II). Altogether, 501 individuals were collected from river Gaula (November 2013-October 2014) and were preserved in formalin for further analysis. The results showed that the female outnumbered the male population. The minimum GSI of females was observed in the month of October (4.93 ± 0.26) and for males in the month of June and July (0.093 ± 0.12), whereas, the maximum value was in the month of April for both females (13.47 ± 0.52) and males (1.21 ± 0.12). Fluctuation in GSI values had a bimodal pattern showing two peaks during March-May and August-September in both the sexes, indicating the common spawning period of fish. The slope of regression showed the negative allometric growth for both males and females (b= 2.65 for male and b= 2.5 for female). A significant relationship between length and weight was observed in the present study (p < 0.05). The ELEFAN-I estimated L∞ and K of the von Bertalanffy growth factor for males (17.33 cm and 0.310 per year), females (17.33 cm and 0.3 per year) and pooled sexes (17.33 cm and 0.240 per year). The results indicated that Barilius bendelisis is a small sized fish having negative allometric growth that spawns twice a year. Thus, the present study on biological traits represents the baseline information for effective production, conservation and restoration planning.

Dynamics of Rex3 in the genomes of endangered Iberian Leuciscinae (Teleostei, Cyprinidae and their natural hybrids

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Carla Sofia A. Pereira

2015-10-01

Full Text Available Iberian Leuciscinae are greatly diverse comprising taxa of hybrid origin. With highly conservative karyotypes, Iberian Chondrostoma s.l. have recently demonstrated sub-chromosomal differentiation and rapid genome restructuring in natural hybrids, which was confirmed by ribosomal DNA (rDNA transposition and/or multiplication. To understand the role of repetitive DNAs in the differentiation of their genomes, a genetic and molecular cytogenetic survey was conducted in Achondrostoma oligolepis, Anaecypris hispanica, Iberochondrostoma lemmingii, I. lusitanicum, Pseudochondrostoma duriense, P. polylepis, Squalius pyrenaicus and hybrids between A. oligolepis x (P. duriense/P. polylepis, which represent 'alburnine', chondrostomine and Squalius lineages. The chromosomal distribution of Rex3 retroelement was found highly compartmentalized at centromeres and moderately at telomeres, co-localizing with 5S rDNA loci, and grossly correlating with heterochromatin and blocks of C0t-1 DNA. This accumulation was evident in at least 10 chromosome pairs, a pattern that seemed to be shared among the different species, likely predating their divergence. Nevertheless, species-specific clusters were detected in I. lusitanicum, P. duriense, P. polylepis and S. pyrenaicus demonstrating rapid and independent differentiation. Natural hybrids followed the same accumulation pattern and association with repetitive sequences but with increased number of Rex3 clusters and correlating with translocated 45S rDNA clusters. Rex3 sequence phylogeny didn't agree with its hosts' phylogeny but the observed distribution pattern is congruent with an evolutionary tendency to protect its activity, a robust regulatory system and/or events of horizontal transfer. This is the first report of retroelement physical mapping in Cyprinidae. It helped outlining conceivable ancestral homologies and recognizing retrotransposon activation in hybrids, being possibly associated with genome

Early Jurassic diversification of pycnodontiform fishes (Actinopterygii, Neopterygii) after the end-Triassic extinction event: evidence from a new genus and species, Grimmenodon aureum.

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Stumpf, Sebastian; Ansorge, Jörg; Pfaff, Cathrin; Kriwet, Jürgen

2017-07-04

A new genus and species of pycnodontiform fishes, Grimmenodon aureum , from marginal marine, marine-brackish lower Toarcian ( Harpoceras exaratum ammonite subzone) clay deposits of Grimmen in northeastern Germany is described. The single specimen represents a diagnostic left prearticular dentition characterized by unique tooth arrangement and ornamentation patterns. Grimmenodon aureum , gen. et sp. nov., is the second unambiguously identified pycnodontiform species from the Early Jurassic, in addition to Eomesodon liassicus from the early Lower Jurassic of western Europe. We also report an indeterminate pycnodontiform tooth crown from the upper Pliensbachian ( Pleuroceras apyrenum ammonite subzone) of the same site. The material expands the Early Jurassic range of pycnodontiforms significantly northwards and confirms their presence before and immediately following the onset of the Toarcian Oceanic Anoxic Event (T-OAE) in the marginal marine ecosystems south of the Fennoscandian Shield. Moreover, the new records indicate that the Early Jurassic diversity of pycnodontiform fishes was greater than previously assumed and probably equaled that of the Late Triassic. Therefore, it is hypothesized that the Triassic-Jurassic mass extinction event did not affect pycnodontiform fishes significantly. Micro-computed tomography was used to study the internal anatomy of the prearticular of Grimmenodon aureum , gen. et sp. nov. Our results show that no replacement teeth were formed within the tooth-bearing bone but rather were added posteriorly to functional teeth. http://zoobank.org/urn:lsid:zoobank.org:pub:A56BDE9C-40C4-4CFA-9C2E-F5FA35A66F2 Citation for this article: Stumpf, S., J. Ansorge, C. Pfaff, and J. Kriwet. 2017. Early Jurassic diversification of pycnodontiform fishes (Actinopterygii, Neopterygii) after the end-Triassic extinction event: Evidence from a new genus and species, Grimmenodon aureum . Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1344679.

Ecological traits of Squalius lucumonis (Actinopterygii, Cyprinidae and main differences with those of Squalius squalus in the Tiber River Basin (Italy

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Giannetto D.

2013-06-01

Full Text Available Squalius lucumonis (Bianco, 1983 is an endemic species restricted to three river basins in central Italy and listed as endangered according to IUCN Red List. The aim of this research was to increase the information on ecological preferences of this species and to focus on its differences with S. squalus (Bonaparte, 1837. Data collected in 86 different watercourses throughout Tiber River basin were analysed in the research. For each of the 368 river sectors examined, the main environmental parameters and the fish community were considered. The information were analysed by means of the Canonical Correspondence Analysis (CCA while the differences in ecological traits between S. lucumonis and S. squalus were compared by ANOVA. The results of the study showed significant differences in the ecological preferences of the two species: the S. lucumonis showed predilection for smaller watercourses characterised by a lower number of species and a higher degree of integrity of fish community than S. squalus This information allowed to increase the basic knowledge on population biology and ecology of S. lucumonis that could be very useful for the management and conservation of this Italian endemic species.

Effects of different inorganic arsenic species in Cyprinus carpio (Cyprinidae) tissues after short-time exposure: Bioaccumulation, biotransformation and biological responses

International Nuclear Information System (INIS)

Ventura-Lima, Juliane; Fattorini, Daniele; Regoli, Francesco; Monserrat, Jose M.

2009-01-01

Differences in the toxicological and metabolic pathway of inorganic arsenic compounds are largely unknown for aquatic species. In the present study the effects of short-time and acute exposure to As III and As V were investigated in gills and liver of the common carp, Cyprinus carpio (Cyprinidae), measuring accumulation and chemical speciation of arsenic, and the activity of glutathione-S-transferase omega (GST Ω), the rate limiting enzyme in biotransformation of inorganic arsenic. Oxidative biomarkers included antioxidant defenses (total glutathione-S-transferases, glutathione reductase, glutathione, and glucose-6-phosphate dehydrogenase), total scavenging capacity toward peroxyl radicals, reactive oxygen species (ROS) measurement and lipid peroxidation products. A marked accumulation of arsenic was observed only in gills of carps exposed to 1000 ppb As V . Also in gills, antioxidant responses were mostly modulated through a significant induction of glucose-6-phosphate dehydrogenase activity which probably contributed to reduce ROS formation; however this increase was not sufficient to prevent lipid peroxidation. No changes in metal content were measured in liver of exposed carps, characterized by lower activity of GST Ω compared to gills. On the other hand, glutathione metabolism was more sensitive in liver tissue, where a significant inhibition of glutathione reductase was concomitant with increased levels of glutathione and higher total antioxidant capacity toward peroxyl radicals, thus preventing lipid peroxidation and ROS production. The overall results of this study indicated that exposure of C. carpio to As III and As V can induce different responses in gills and liver of this aquatic organism. - Common carp (Cyprinus carpio) presented marked differences between gills and liver after arsenic exposure in terms of antioxidant responses and also in biotransformation.

Effects of different inorganic arsenic species in Cyprinus carpio (Cyprinidae) tissues after short-time exposure: Bioaccumulation, biotransformation and biological responses

Energy Technology Data Exchange (ETDEWEB)

Ventura-Lima, Juliane [Instituto de Ciencias Biologicas, Universidade Federal do Rio Grande - FURG, Rio Grande, RS (Brazil); Programa de Pos-Graduacao em Ciencias Fisiologicas - Fisiologia Animal Comparada (FURG), Rio Grande, RS (Brazil); Fattorini, Daniele; Regoli, Francesco [Istituto di Biologia e Genetica, Universita Politecnica delle Marche, 60100, Ancona (Italy); Monserrat, Jose M., E-mail: josemmonserrat@pesquisador.cnpq.b [Instituto de Ciencias Biologicas, Universidade Federal do Rio Grande - FURG, Rio Grande, RS (Brazil); Programa de Pos-Graduacao em Ciencias Fisiologicas - Fisiologia Animal Comparada (FURG), Rio Grande, RS (Brazil)

2009-12-15

Differences in the toxicological and metabolic pathway of inorganic arsenic compounds are largely unknown for aquatic species. In the present study the effects of short-time and acute exposure to As{sup III} and As{sup V} were investigated in gills and liver of the common carp, Cyprinus carpio (Cyprinidae), measuring accumulation and chemical speciation of arsenic, and the activity of glutathione-S-transferase omega (GST OMEGA), the rate limiting enzyme in biotransformation of inorganic arsenic. Oxidative biomarkers included antioxidant defenses (total glutathione-S-transferases, glutathione reductase, glutathione, and glucose-6-phosphate dehydrogenase), total scavenging capacity toward peroxyl radicals, reactive oxygen species (ROS) measurement and lipid peroxidation products. A marked accumulation of arsenic was observed only in gills of carps exposed to 1000 ppb As{sup V}. Also in gills, antioxidant responses were mostly modulated through a significant induction of glucose-6-phosphate dehydrogenase activity which probably contributed to reduce ROS formation; however this increase was not sufficient to prevent lipid peroxidation. No changes in metal content were measured in liver of exposed carps, characterized by lower activity of GST OMEGA compared to gills. On the other hand, glutathione metabolism was more sensitive in liver tissue, where a significant inhibition of glutathione reductase was concomitant with increased levels of glutathione and higher total antioxidant capacity toward peroxyl radicals, thus preventing lipid peroxidation and ROS production. The overall results of this study indicated that exposure of C. carpio to As{sup III} and As{sup V} can induce different responses in gills and liver of this aquatic organism. - Common carp (Cyprinus carpio) presented marked differences between gills and liver after arsenic exposure in terms of antioxidant responses and also in biotransformation.

Multiple source genes of HAmo SINE actively expanded and ongoing retroposition in cyprinid genomes relying on its partner LINE

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Gan Xiaoni

2010-04-01

Full Text Available Abstract Background We recently characterized HAmo SINE and its partner LINE in silver carp and bighead carp based on hybridization capture of repetitive elements from digested genomic DNA in solution using a bead-probe 1. To reveal the distribution and evolutionary history of SINEs and LINEs in cyprinid genomes, we performed a multi-species search for HAmo SINE and its partner LINE using the bead-probe capture and internal-primer-SINE polymerase chain reaction (PCR techniques. Results Sixty-seven full-size and 125 internal-SINE sequences (as well as 34 full-size and 9 internal sequences previously reported in bighead carp and silver carp from 17 species of the family Cyprinidae were aligned as well as 14 new isolated HAmoL2 sequences. Four subfamilies (type I, II, III and IV, which were divided based on diagnostic nucleotides in the tRNA-unrelated region, expanded preferentially within a certain lineage or within the whole family of Cyprinidae as multiple active source genes. The copy numbers of HAmo SINEs were estimated to vary from 104 to 106 in cyprinid genomes by quantitative RT-PCR. Over one hundred type IV members were identified and characterized in the primitive cyprinid Danio rerio genome but only tens of sequences were found to be similar with type I, II and III since the type IV was the oldest subfamily and its members dispersed in almost all investigated cyprinid fishes. For determining the taxonomic distribution of HAmo SINE, inter-primer SINE PCR was conducted in other non-cyprinid fishes, the results shows that HAmo SINE- related sequences may disperse in other families of order Cypriniforms but absent in other orders of bony fishes: Siluriformes, Polypteriformes, Lepidosteiformes, Acipenseriformes and Osteoglossiforms. Conclusions Depending on HAmo LINE2, multiple source genes (subfamilies of HAmo SINE actively expanded and underwent retroposition in a certain lineage or within the whole family of Cyprinidae. From this

Effects of carbon nanomaterials fullerene C60 and fullerol C60(OH)18–22 on gills of fish Cyprinus carpio (Cyprinidae) exposed to ultraviolet radiation

International Nuclear Information System (INIS)

Socoowski Britto, Roberta; Longaray Garcia, Márcia; Martins da Rocha, Alessandra; Artigas Flores, Juliana; Pinheiro, Maurício V. Brant; Monserrat, José María; Ribas Ferreira, Josencler L.

2012-01-01

In consequence of their growing use and demand, the inevitable environmental presence of nanomaterials (NMs) has raised concerns about their potential deleterious effects to aquatic environments. The carbon NM fullerene (C 60 ), which forms colloidal aggregates in water, and its water-soluble derivative fullerol (C 60 (OH) 18–22 ), which possesses antioxidant properties, are known to be photo-excited by ultraviolet (UV) or visible light. To investigate their potential hazards to aquatic organisms upon exposure to UV sunlight, this study analyzed (a) the in vitro behavior of fullerene and fullerol against peroxyl radicals (ROO·) under UV-A radiation and (b) the effects of these photo-excited NMs on oxidative stress parameters in functional gills extracted from the fish Cyprinus carpio (Cyprinidae). The variables measured were the total antioxidant capacity, lipid peroxidation (TBARS), the activities of the antioxidant enzymes glutathione reductase (GR) and glutamate cysteine ligase (GCL), and the levels of the non-enzymatic antioxidant glutathione (GSH). The obtained results revealed the following: (1) both NMs behaved in vitro as antioxidants against ROO· in the dark and as pro-oxidants in presence of UV-A, the latter effect being reversed by the addition of sodium azide, which is a singlet oxygen ( 1 O 2 ) quencher; (2) fullerene induced toxicity with or without UV-A incidence, with a significant (p 1 O 2 generation; and (3) fullerol also decreased GCL activity and GSH formation (p 1 O 2 formation.

Cenozoic tectonic and climatic events in southern Iberian Peninsula: Implications for the evolutionary history of freshwater fish of the genus Squalius (Actinopterygii, Cyprinidae).

Science.gov (United States)

Perea, Silvia; Cobo-Simon, Marta; Doadrio, Ignacio

2016-04-01

Southern Iberian freshwater ecosystems located at the border between the European and African plates represent a tectonically complex region spanning several geological ages, from the uplifting of the Betic Mountains in the Serravalian-Tortonian periods to the present. This area has also been subjected to the influence of changing climate conditions since the Middle-Upper Pliocene when seasonal weather patterns were established. Consequently, the ichthyofauna of southern Iberia is an interesting model system for analyzing the influence of Cenozoic tectonic and climatic events on its evolutionary history. The cyprinids Squalius malacitanus and Squalius pyrenaicus are allopatrically distributed in southern Iberia and their evolutionary history may have been defined by Cenozoic tectonic and climatic events. We analyzed MT-CYB (510 specimens) and RAG1 (140 specimens) genes of both species to reconstruct phylogenetic relationships and to estimate divergence times and ancestral distribution ranges of the species and their populations. We also assessed their levels of genetic structure and diversity as well as the amount of gene flow between populations. To investigate recent paleogeographical and climatic factors in southern Iberia, we modeled changes-through-time in sea level from the LGM to the present. Phylogenetic, geographic and population structure analyses revealed two well-supported species (S. malacitanus and S. pyrenaicus) in southern Iberia and two subclades (Atlantic and Mediterranean) within S. malacitanus. The origin of S. malacitanus and the separation of its Atlantic and Mediterranean populations occurred during the Serravalian-Tortonian and Miocene-Pliocene periods, respectively. These divergence events occurred in the Middle Pliocene and Pleistocene in S. pyrenaicus. In both species, Atlantic basins possessed populations with higher genetic diversity than Mediterranean, which may be explained by the Janda Lagoon. The isolation of S. malacitanus was earlier and related to the rising of the Betic Mountains. Divergence of its Atlantic and Mediterranean populations was associated with the creation of the freshwater systems of southern Iberia close to the Gibraltar Strait. The presence of S. pyrenaicus in southern Iberia may be the result of recent colonization associated with river capture, as demonstrated our biogeographic reconstruction. Copyright © 2016 Elsevier Inc. All rights reserved.

A consensus linkage map of the grass carp (Ctenopharyngodon idella based on microsatellites and SNPs

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Li Jiale

2010-02-01

Full Text Available Abstract Background Grass carp (Ctenopharyngodon idella belongs to the family Cyprinidae which includes more than 2000 fish species. It is one of the most important freshwater food fish species in world aquaculture. A linkage map is an essential framework for mapping traits of interest and is often the first step towards understanding genome evolution. The aim of this study is to construct a first generation genetic map of grass carp using microsatellites and SNPs to generate a new resource for mapping QTL for economically important traits and to conduct a comparative mapping analysis to shed new insights into the evolution of fish genomes. Results We constructed a first generation linkage map of grass carp with a mapping panel containing two F1 families including 192 progenies. Sixteen SNPs in genes and 263 microsatellite markers were mapped to twenty-four linkage groups (LGs. The number of LGs was corresponding to the haploid chromosome number of grass carp. The sex-specific map was 1149.4 and 888.8 cM long in females and males respectively whereas the sex-averaged map spanned 1176.1 cM. The average resolution of the map was 4.2 cM/locus. BLAST searches of sequences of mapped markers of grass carp against the whole genome sequence of zebrafish revealed substantial macrosynteny relationship and extensive colinearity of markers between grass carp and zebrafish. Conclusions The linkage map of grass carp presented here is the first linkage map of a food fish species based on co-dominant markers in the family Cyprinidae. This map provides a valuable resource for mapping phenotypic variations and serves as a reference to approach comparative genomics and understand the evolution of fish genomes and could be complementary to grass carp genome sequencing project.

Isolation and characterisation of mRNA encoding the salmon- and chicken-II type gonadotrophin-releasing hormones in the teleost fish Rutilus rutilus (Cyprinidae).

Science.gov (United States)

Penlington, M C; Williams, M A; Sumpter, J P; Rand-Weaver, M; Hoole, D; Arme, C

1997-12-01

The complementary DNAs (cDNA) encoding the [Trp7,Leu8]-gonadotrophin-releasing hormone (salmon-type GnRH; sGnRH:GeneBank accession no. u60667) and the [His5,Trp7,Tyr8]-GnRH (chicken-II-type GnRH; cGnRH-II: GeneBank accession no. u60668) precursor in the roach (Rutilus rutilus) were isolated and sequenced following reverse transcription and rapid amplification of cDNA ends (RACE). The sGnRH and cGnRH-II precursor cDNAs consisted of 439 and 628 bp, and included open reading frames of 282 and 255 bp respectively. The structures of the encoded peptides were the same as GnRHs previously identified in other vertebrates. The sGnRH and cGnRH-II precursor cDNAs, including the non-coding regions, had 88.6 and 79.9% identity respectively, to those identified in goldfish (Carassius auratus). However, significant similarity was not observed between the non-coding regions of the GnRH cDNAs of Cyprinidae and other fish. The presumed third exon, encoding partial sGnRH associated peptide (GAP) of roach, demonstrated significant nucleotide and amino acid similarity with the appropriate regions in the goldfish, but not with other species, and this may indicate functional differences of GAP between different families of fish. cGnRH-II precursor cDNAs from roach had relatively high nucleotide similarity across this GnRH variant. Cladistic analysis classified the sGnRH and cGnRH-II precursor cDNAs into three and two groups respectively. However, the divergence between nucleotide sequences within the sGnRH variant was greater than those encoding the cGnRH-II precursors. Consistent with the consensus developed from previous studies, Northern blot analysis demonstrated that expression of sGnRH and cGnRH-II was restricted to the olfactory bulbs and midbrain of roach respectively. This work forms the basis for further study on the mechanisms by which the tapeworm, Ligula intestinalis, interacts with the pituitary-gonadal axis of its fish host.

A digest of bony fish tapeworms

Czech Academy of Sciences Publication Activity Database

Scholz, Tomáš; Kuchta, Roman

2017-01-01

Roč. 67, č. 2 (2017), s. 43-58 ISSN 0240-8759 R&D Projects: GA ČR(CZ) GBP505/12/G112 Institutional support: RVO:60077344 Keywords : Cestoda * review * diversity * host associations * distributions * phylogeny * Actinopterygii * biogeography Subject RIV: EG - Zoology OBOR OECD: Zoology Impact factor: 0.343, year: 2016

TELEOSTEI; CYPRINIDAE

African Journals Online (AJOL)

these fISh (Love 1970), but the effects of maintaining fISh in laboratory aquaria on their haematology per se have not yet been investigated and laboratory data are usually thought to apply to wild fish as well. Newly caught, exhausted fish cannot be used for the determination of certain physiological parameters (Love 1970) ...

a survey of the artisanal fisheries of kontagora reservoir, niger state

African Journals Online (AJOL)

DR. AMINU

, Nigeria. Fish families /Species. English. Local Name. Cichlidae. Tilapia melanopleura. Tilapia. Gargaza. Hemichromis fasciatus. Tiliapia. Kulkula. Cyprinidae. Barilius niloticus. Barb. Dankursa. Bagridae. Auchenoglanis occidentalis. Cat fish.

New circumscription of freshwater fish parasites Monobothrium diesing, 1863 and Promonobothrium mackiewicz, 1968 (Cestoda: Caryophyllidea) using morphological and molecular evidence.

Science.gov (United States)

Scholz, Tomáš; Oros, Mikuláš; Choudhury, Anindo; Brabec, Jan; Waeschenbach, Andrea

2015-02-01

Two genera of caryophyllidean cestodes, Monobothrium Diesing, 1863 and Promonobothrium Mackiewicz, 1968 , from cypriniform fishes (cyprinids and suckers) in the Holarctic Region, are revised using morphological and molecular evidence. Monobothrium, which includes morphologically distinct species that occur in European cyprinids (Cyprinidae) and North American suckers (Catostomidae), is separated into 3 genera. Monobothrium becomes monotypic and is represented by its type species, Monobothrium wageneri Nybelin, 1922 , which occurs in European tench, Tinca tinca (Cyprinidae). Monobothrium auriculatum Kulakovskaya, 1961 from Leuciscus danilevskii (Cyprinidae) in the Ukraine, is tentatively transferred to Caryophyllaeus Gmelin, 1790 as Caryophyllaeus auriculatus ( Kulakovskaya, 1961 ) n. comb. because it possesses morphological characteristics considered to be typical of Caryophyllaeus but which are absent in Monobothrium (shape of the scolex, presence of a seminal receptacle, short neck, and absence of a large, muscular papilla surrounding the large gonopores). The 5 remaining Monobothrium species from suckers in North America are transferred to Promonobothrium based on shared morphological features and molecular data. Species of Promonobothrium differ from M. wageneri by having an external seminal vesicle (absent in M. wageneri), the absence of postovarian vitelline follicles in North American species (present in M. wageneri), and a scolex that is digitiform papillate, loculopapillate, or loculotruncate, i.e., equipped with weak loculi and a terminal introvert (vs. claviform, bluntly ended, with 6 weak, shallow, longitudinal grooves in M. wageneri). Phylogenetic analysis of nuclear ribosomal RNA genes ssr- and lsrDNA placed Promonobothrium minytremi within a clade of 3 of the 5 North American Monobothrium species. The position of M. wageneri, although distinct from the remaining Monobothrium species, is unresolved within the Caryophyllidea. This study further

A molecular approach to the genus Alburnoides using COI sequences data set and the description of a new species, A. damghani, from the Damghan River system (the Dasht-e Kavir Basin, Iran) (Actinopterygii, Cyprinidae)

OpenAIRE

Jouladeh Roudbar,Arash; Eagderi,Soheil; Esmaeili,Hamid Reza; Coad,Brian; Bogutskaya,Nina

2016-01-01

Abstract The molecular status of nine species of the genus Alburnoides from different river drainages in Iran and additionally by seven species from Europe was assessed. mtDNA COI gene sequences from freshly collected specimens and available NCBI data revealed four major phylogenetic lineages. Based on the results, a distinct taxon from the Cheshmeh Ali (Ali Spring), a Damghan River tributary in the endorheic Dasht-e Kavir basin, northern Iran, which is the closest sister to Alburnoides namak...

New evidence of homoplasy within the African genus Varicorhinus ...

African Journals Online (AJOL)

New evidence of homoplasy within the African genus Varicorhinus (Cyprinidae): an independent origin of specialized scraping forms in the adjacent drainage systems of Ethiopia inferred from mtDNA analysis.

A PRELIMINARY HISTOLOGICAL STUDY ON OVARIUM DEVELOPMENT IN MIRROR CARP AND SCALED CARP (Cyprinus carpio L., 1758) INTRODUCED INTO GELINGÜLLÜ RESERVOIR, TURKEY

OpenAIRE

Erkmen, Belda; Kırankaya, Şerife Gülsün

2016-01-01

Carp(Cyprinus carpio) is the most common species of the Cyprinidae familyand is among the important species commercially caught in the GelingüllüReservoir, Yozgat, Turkey. In this study, the reproductive biology of mirrorcarp and scaled carp in Gelingüllü Reservoir was studied in terms of thegonadosomatic index (GSI), fecundity, and ovarian histology. Ovaries wereclassified into 5 maturity stages based on histological data, as follows: 1.Chromatin-nucleolus stage (oocyte diameter is 20-60 µm)...

Dieta de la carpa Notropis moralesi (Pisces: Cyprinidae en el río Amacuzac, Morelos, México

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Patricia Trujillo-Jiménez

2009-06-01

Full Text Available Notropis moralesi, conocido comúnmente como "carpa tepelneme", es un pez endémico del río Papaloapan. Se analizó su dieta y hábitos alimentarios. Se tomaron muestras mensuales en el río Amacuzac, Morelos, México. La identificación del contenido estomacal (294 ejemplares se llevó hasta el taxon más específico posible. Para la cuantificación se utilizaron los métodos numérico (No y frecuencia de aparición (F.O.. Se utilizó el índice de amplitud de nicho trófico de Levin y el índice de traslape de MacArthur y Levin. N. moralesi presentó la ingestión de once componentes alimenticios, de los cuales diez son de origen animal y uno vegetal. Los quironómidos y efemerópteros fueron los más consumidos independientemente del sexo, talla y época del año. El análisis por épocas del año, reportó diez componentes en el estiaje y ocho en las lluvias. La dieta de los inmaduros estuvo constituida por diez componentes, la de las hembras por ocho y el de los machos por cinco. La prueba de Ji-cuadrada reveló que no existen diferencias significativas entre las dietas por estadio de desarrollo, sexos y épocas del año. El traslape de los nichos tróficos, reveló valores superiores a 0.60 en todas las combinaciones por sexos y épocas del año. N. moralesi es una especie carnívora con tendencias insectívoras y presenta hábitos alimentarios de tipo bentófago.Diet of the chub, Notropis moralesi (Pisces: Cyprinidae in the Amacuzac River, Morelos, Mexico. Notropis moralesi, locally known as "carpa tepelneme", is a small endemic fish of the Papaloapan River. We analyzed its diet and feeding habits. Specimens were captured monthly from Amacuzac, River, Morelos, Mexico. The gut content of 294 specimens was identified to the most specific taxonomic category possible. We quantified gut content by the numerical and frequency of occurrence methods and used the Levin’s amplitude of trophic niche indices and MacArthur and Levin`s indices for

Effects of carbon nanomaterials fullerene C{sub 60} and fullerol C{sub 60}(OH){sub 18-22} on gills of fish Cyprinus carpio (Cyprinidae) exposed to ultraviolet radiation

Energy Technology Data Exchange (ETDEWEB)

Socoowski Britto, Roberta; Longaray Garcia, Marcia; Martins da Rocha, Alessandra [Universidade Federal do Rio Grande - FURG, Instituto de Ciencias Biologicas, Campus Carreiros, Av. Italia km 8 s/n, Rio Grande, RS (Brazil); Programa de Pos Graduacao em Fisiologia Animal Comparada - Fisiologia Animal Comparada, FURG (Brazil); Artigas Flores, Juliana [Universidade Federal do Rio Grande - FURG, Instituto de Ciencias Biologicas, Campus Carreiros, Av. Italia km 8 s/n, Rio Grande, RS (Brazil); Pinheiro, Mauricio V. Brant [Departamento de Fisica, ICEx, Universidade Federal de Minas Gerais, MG (Brazil); Monserrat, Jose Maria [Universidade Federal do Rio Grande - FURG, Instituto de Ciencias Biologicas, Campus Carreiros, Av. Italia km 8 s/n, Rio Grande, RS (Brazil); Programa de Pos Graduacao em Fisiologia Animal Comparada - Fisiologia Animal Comparada, FURG (Brazil); Ribas Ferreira, Josencler L., E-mail: josenclerf@gmail.com [Universidade Federal do Rio Grande - FURG, Instituto de Ciencias Biologicas, Campus Carreiros, Av. Italia km 8 s/n, Rio Grande, RS (Brazil); Programa de Pos Graduacao em Fisiologia Animal Comparada - Fisiologia Animal Comparada, FURG (Brazil)

2012-06-15

In consequence of their growing use and demand, the inevitable environmental presence of nanomaterials (NMs) has raised concerns about their potential deleterious effects to aquatic environments. The carbon NM fullerene (C{sub 60}), which forms colloidal aggregates in water, and its water-soluble derivative fullerol (C{sub 60}(OH){sub 18-22}), which possesses antioxidant properties, are known to be photo-excited by ultraviolet (UV) or visible light. To investigate their potential hazards to aquatic organisms upon exposure to UV sunlight, this study analyzed (a) the in vitro behavior of fullerene and fullerol against peroxyl radicals (ROO{center_dot}) under UV-A radiation and (b) the effects of these photo-excited NMs on oxidative stress parameters in functional gills extracted from the fish Cyprinus carpio (Cyprinidae). The variables measured were the total antioxidant capacity, lipid peroxidation (TBARS), the activities of the antioxidant enzymes glutathione reductase (GR) and glutamate cysteine ligase (GCL), and the levels of the non-enzymatic antioxidant glutathione (GSH). The obtained results revealed the following: (1) both NMs behaved in vitro as antioxidants against ROO{center_dot} in the dark and as pro-oxidants in presence of UV-A, the latter effect being reversed by the addition of sodium azide, which is a singlet oxygen ({sup 1}O{sub 2}) quencher; (2) fullerene induced toxicity with or without UV-A incidence, with a significant (p < 0.05) increase in lipid peroxidation (with greater damage under illumination), a decrease in GCL activity, and the depletion of GSH stocks (under illumination), all of which were attributed to {sup 1}O{sub 2} generation; and (3) fullerol also decreased GCL activity and GSH formation (p < 0.05) but without lipid damage. The overall results show that fullerene can be toxic with or without light incidence, whereas UV radiation seems to play a key role in the environmental toxicity of carbon NMs through {sup 1}O{sub 2} formation.

Introduction to Some Species of Argulus (Crustacea: Branchiura ...

African Journals Online (AJOL)

PROF HORSFALL

2017-12-12

Dec 12, 2017 ... has been found in Asia, Europe, Africa, Australia and. North, Central, and South .... of Culture Cyprinidae in Pen Culture of Anzali. Lagoon. .... PHM; Wendelaar Bonga, SE (1999). Modulation ... auratus auratus) in India. Biolife.

Normal axial skeleton structure in common roach Rutilus rutilus (Actinopterygii: Cyprinidae) and malformations due to radiation contamination in the area of the Mayak (Chelyabinsk Province, Russia) nuclear plant.

Science.gov (United States)

Bogutskaya, N G; Zuykov, M A; Naseka, A M; Anderson, E B

2011-10-01

This study was designed to describe normal axial skeletal structure in common roach Rutilus rutilus from putative unaffected environmental conditions, and the occurrence of skeletal malformations in the fish from an area under radiation contamination. Specimens were collected from water bodies of the Techa Cascade Reservoirs located near the Mayak atomic industry plant in the River Ob' drainage, Chelyabinsk Province, Russia. One sample was collected from Lake Irtyash, a reservoir of drinkable water, supplying the town of Ozersk, and the other one from a technical reservoir which is a storage of liquid radioactive waste from Mayak and characterized by high radioactive contamination (mostly (90)Sr and (137)Cs). A comparison was made with historical material collected from the River Ob' before the middle of the 20th century, i.e. before the environment became affected by radioactive contamination. A high number of abnormalities of the axial skeleton were detected in both Mayak samples, in 94 and 97% of examined specimens, in contrast to about 20% in the historical specimens. The abnormalities were in both the unpaired fins and the vertebral column, including the caudal complex and included supernumerary elements, fusions, deformities and displacement of the elements. Most axial skeleton abnormalities, however, were minor, such as splitting, shortening or deformation of spines. Severe defects, such as extensive scolioses, lordoses and kyphoses, were not found. The causes of the abnormalities were not identified in this study, but the high incidence of malformations may be attributed to genetically determined imbalance during development. The almost equal distribution of abnormalities among the fish from non-contaminated and radioactive contaminated reservoirs may be explained by either recent gene flow within the population of R. rutilus in the River Techa system or the effect of unknown unfavourable environmental factors such as chemical pollution. © 2011 The Authors. Journal of Fish Biology © 2011 The Fisheries Society of the British Isles.

Fish fauna of the Camp dels Ninots locality (Pliocene; Caldes de Malavella, province of Girona, Spain) - first results with notes on palaeoecology and taphonomy

Czech Academy of Sciences Publication Activity Database

Přikryl, Tomáš; Gómez de Soler, B.; Oms, O.; Roubach, S.; Blain, H-A.; Agustí, J.

2016-01-01

Roč. 28, č. 3 (2016), s. 347-357 ISSN 0891-2963 Institutional support: RVO:67985831 Keywords : Camp dels Ninots * Cyprinidae * maar lake * NE Spain * Pliocene * Teleostei Subject RIV: DB - Geology ; Mineralogy Impact factor: 1.556, year: 2016

Cyprinid fishes: systematics, biology, and exploitation

National Research Council Canada - National Science Library

Winfield, Ian J; Nelson, Joseph S

1991-01-01

The Cyprinidae is one of the two largest families of vertebrates in the world. This book draws together the experience of more than 30 international experts to provide the first comprehensive account of the biology of this family...

Phylogenetic relationships of Acheilognathidae (Cypriniformes: Cyprinoidea) as revealed from evidence of both nuclear and mitochondrial gene sequence variation: Evidence for necessary taxonomic revision in the family and the identification of cryptic species

Czech Academy of Sciences Publication Activity Database

Chang, H.-C.; Li, F.; Shao, K.-T.; Lin, Y.-S.; Morosawa, T.; Kim, S.; Koo, H.; Kim, W.; Lee, J.-S.; He, S.; Smith, Carl; Reichard, Martin; Miya, M.; Sado, T.; Uehara, K.; Lavoué, S.; Chen, W.-J.; Mayden, R. L.

2014-01-01

Roč. 81, December (2014), s. 182-194 ISSN 1055-7903 Institutional support: RVO:68081766 Keywords : Acheilognathinae * Cyprinidae * Cryptic species * Nuclear loci * Cytochrome b * European bitterling Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.916, year: 2014

The diet of otters ( Lutra lutra L.) in Danish freshwater habitats : comparisons of prey fish populations

DEFF Research Database (Denmark)

Taastrom, H.M.; Jacobsen, Lene

1999-01-01

Otter spraints from five Danish freshwater localities were analysed. In all localities fish was the main prey (76-99% of estimated bulk), especially in winter. Depending on locality, the prey fish mainly consisted of cyprinids (Cyprinidae), percids (Percidae) or salmonids (Salmonidae). Seasonal v...

Karyoevolutionary and karyosystematic considerations on ...

African Journals Online (AJOL)

Cytogenetic studies have helped in clarifying the problem of disagreement amongst taxonomists on the identity of a given species. Cytogenetic studies were performed on two fishes of the genus Schizothorax viz. Schizothorax curvifrons Heckel and Schizothorax niger Heckel (Cyprinidae: Schizothoracinae) obtained from ...

A molecular approach to the genus Alburnoides using COI sequences data set and the description of a new species, A. damghani, from the Damghan River system (the Dasht-e Kavir Basin, Iran) (Actinopterygii, Cyprinidae).

Science.gov (United States)

Roudbar, Arash Jouladeh; Eagderi, Soheil; Esmaeili, Hamid Reza; Coad, Brian W; Bogutskaya, Nina

2016-01-01

The molecular status of nine species of the genus Alburnoides from different river drainages in Iran and additionally by seven species from Europe was assessed. mtDNA COI gene sequences from freshly collected specimens and available NCBI data revealed four major phylogenetic lineages. Based on the results, a distinct taxon from the Cheshmeh Ali (Ali Spring), a Damghan River tributary in the endorheic Dasht-e Kavir basin, northern Iran, which is the closest sister to Alburnoides namaki (Namak Lake basin) + Alburnoides coadi (Nam River in the endorheic Dasht-e Kavir basin) is considered as a new species, Alburnoides damghani sp. n. It is distinguished from other Alburnoides species in Iran by a combination of character states including: a weakly-developed, variably-scaled, ventral keel from completely scaleless to completely scaled, a short snout with the tip of the mouth cleft on a level with the lower margin of the pupil or slightly lower, a small eye (eye horizontal diameter slightly to markedly less than interorbital width), commonly 8½ branched dorsal-fin rays, commonly 11-12½ branched anal-fin rays, 40-46(47) total lateral-line scales, 2.5-4.2 or 2.5-4.1 pharyngeal teeth, gill rakers short and widely spaced, 6-8 in total, 39-41 (commonly 40), total vertebrae, (19)20(21) abdominal vertebrae, 19-21 (most commonly 20) caudal vertebrae, abdominal vertebral region most commonly equal to or longer than caudal region, and most common vertebral formulae 20+20 and 21+19.

The host preference and impact of Argulus japonicus ectoparasite on cyprinids in Central Java, Indonesia

Science.gov (United States)

Kismiyati; Wulansari, P. D.; Dewi, N. N.

2018-04-01

The most widely cultivated freshwater fish are from Familia Cyprinidae, among others goldfish (Carassius auratus), koi (Cyprinus carpio) and comet goldfish (Carassius auratus auratus). One of the constraints of freshwater fish cultivation is ectoparasite infestation Argulus japonicus. Financial losses have been experienced by some farmers, caused by these ectoparasitic infestaions. This study was aimed to determine the impact of ectoparasite Argulus japonicus infestation on host (freshwater ornamental fish from Familia Cyprinidae), in order to find a preventive solution to treatment on the host. The results showed that prevalence of infested fish by Argulus japonicus were 57 % goldfish, 31 % comet fish and 65 % koi. Changes of histopathology on host were congestion, baoning degeneration, epithelium erosion and inflammatory cell infiltration. The image of infected leukocytes infested by Argulus japonicus were 8.5 % of lymphocytes, 4.7 % neurophils, 3.9 % monocytes, 1.45 % eosinophils and 0,17% basophils.

Identification And Study Of Fish Species In Karkheh River (Iran

Directory of Open Access Journals (Sweden)

Khoshnood Zahra

2014-10-01

Full Text Available For the investigation of fish from Karkheh River, sampling was performed in a six month period from August 2014 to January 2015. All sampled fish were measured for biometrical values (length and weight. General results of the sampling and identification of the fish showed the presence of 14 species from four fish families of Cyprinidae, Mugilidae, Siluridae and Macrostomidae, out of which the Cyprinidae family were the most frequent of the sampled fish. The most significant abundance belongs to Cyprinus carpio. The fish sampled in the present study were: Liza abu, Ctenopharyngodon idella, Barbel sp., Cyprinion macrostomum, Barbus sharpeyi, Hypophthalmichthys molitrix, Barbus esocinus, Barbus barbulus, Barbus luteus, Barbus grypus, Cyprinus carpio, Silurus triostegus, Mastacembelus circumcinctus and Capoeta trutta. Shannon Index results showed that the fish biodiversity in the studyed area followed a uniform path and additionally that the considered area at the studied period has good fish biodiversity.

Contrasting phylogeography of two Western Palaearctic fish parasites despite similar life cycles

Czech Academy of Sciences Publication Activity Database

Perrot-Minnot, M. J.; Špakulová, M.; Wattier, R.; Kotlík, Petr; Düsen, S.; Aydoğdu, A.; Tougard, C.

2018-01-01

Roč. 45, č. 1 (2018), s. 101-115 ISSN 0305-0270 R&D Projects: GA MŠk EF15_003/0000460 Institutional support: RVO:67985904 Keywords : amphipod * British Islands * comparative phylogeography * Cyprinidae * Danube Subject RIV: EG - Zoology Impact factor: 4.248, year: 2016

African Journal of Aquatic Science - Vol 30, No 1 (2005)

African Journals Online (AJOL)

Growth, reproduction and population structure of Diplotaxodon limnothrissa in the southeast arm of Lake Malawi · EMAIL FULL TEXT EMAIL FULL TEXT ... Histological studies to evaluate gonad development in Barbus neefi (Cyprinidae), the sidespot barb, from South Africa · EMAIL FULL TEXT EMAIL FULL TEXT

The barbs of Lake Tana, Ethiopia : morphological diversity and its implications for taxonomy, trophic resource partitioning, and fisheries

NARCIS (Netherlands)

Nagelkerke, L.

1997-01-01

The rediscovery of a unique species flock of cyprinid fish, its taxonomy and its feeding-biology are described. Fourteen species of barbs (Barbus spp, Cyprinidae, Teleostei) were found in highland (1800 m) Lake Tana, in northwestern Ethiopia. Lake Tana is

Patterns of cyprinid migration through a fishway in relation to light, water temperature and fish circling behaviour

Czech Academy of Sciences Publication Activity Database

Prchalová, Marie; Slavík, O.; Bartoš, L.

2006-01-01

Roč. 4, č. 3 (2006), s. 213-218 ISSN 1571-5124. [International symposium on Ecohydraulics /5./. Madrid, 12.09.2004-17.09.2004] Institutional research plan: CEZ:AV0Z60170517 Keywords : migration * Cyprinidae * fishway * fish counter * water temperature * weather Subject RIV: EH - Ecology, Behaviour

Ancient and modern genome shuffling: Reticulate mito-nuclear phylogeny of four related allopatric species of Gyrodactylus von Nordmann, 1832 (Monogenea: Gyrodactylidae), ectoparasites on the Eurasian minnow Phoxinus phoxinus (L.) (Cyprinidae).

Science.gov (United States)

Lumme, Jaakko; Ziętara, Marek S; Lebedeva, Dar'ya

2017-02-01

Phylogenetic analyses including four allopatric species of Gyrodactylus von Nordmann, 1832 on the Eurasian minnow Phoxinus phoxinus (L.) (Cyprinidae) revealed incongruence between the nuclear ITS1-5.8S-ITS2 and mitochondrial cox1 phylogenies due to ancient hybridisation. Gyrodactylus pannonicus Molnár, 1968 was sampled close to its type-locality, the upper reaches of River Tisza, tributary of Danube in the Black Sea Basin. Faunistic search detected three new related species with maximum composite likelihood distances in cox1 between 16.8-23.2% (tentatively 1.3 to 1.8 My of divergence). Gyrodactylus albolacustris n. sp. recorded in the White Sea Basin, eastern Baltic Basin and Mongolia was close to G. pannonicus in the nuclear ITS (divergence of 0.9%), but diverged in cox1 by 19.8%. The Mongolian isolate of G. albolacustris n. sp. diverged from the European isolates in cox1 by 8.9%, suggesting 0.7 My of isolation. The two other new species differed from G. pannonicus by >4% in ITS and some large indels in ITS1, and by >20% in cox1. Gyrodactylus danastriae n. sp. was found in River Strwiąż, a tributary of the River Dniester (Black Sea Basin) and was characterised by smaller size of anchors and by 29-41 bp dimorphic insertion in ITS1. Gyrodactylus botnicus n. sp. is considered endemic in the Baltic Basin, but was also found in the White Sea Basin as a postglacial immigrant, where it had hybridised with G. albolacustris n. sp. in spite of the high divergence in ITS (3.9%) and cox1 (22%). The discordant nuclear and mitochondrial phylogenies revealed an ancient mitochondrial introgression: G. albolacustris n. sp. was derived from a hybridisation combining proto-pannonicus ITS with proto-danastriae mitochondria, perhaps 1.3 My ago. The postglacial hybridisation of G. albolacustris n. sp. (as the donor of mtDNA alb and ITS alb ) and G. botnicus n. sp. (donor of the ITS bot ) offered a model of shuffling of the genomic components: the process of the homogenisation

Browse Title Index

African Journals Online (AJOL)

Items 301 - 350 of 708 ... Vol 30, No 1 (2005), Histological studies to evaluate gonad development in Barbus neefi (Cyprinidae), the sidespot barb, from South Africa, Abstract. W Vlok. Vol 41, No 2 (2016), Histopathological biomarkers and genotoxicity in gill and liver tissues of Nile tilapia Oreochromis niloticus from a polluted ...

Two species of Rhabdochona Railliet, 1916 (Nematoda: Rhabdochonidae) parasitising cyprinid fishes in Iraq, with a redescription of R. tigridis Rahemo, 1978 (emend.)

Czech Academy of Sciences Publication Activity Database

Moravec, František; Saraiva, A.; Abdullah, S. M. A.; Bilal, S. J.; Rahemo, Z. I. F.

2009-01-01

Roč. 74, č. 2 (2009), s. 125-135 ISSN 0165-5752 R&D Projects: GA ČR(CZ) GA524/06/0170; GA MŠk LC522 Institutional research plan: CEZ:AV0Z60220518 Keywords : Rhabdochona * Cyprinidae * Iraq Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine Impact factor: 0.911, year: 2009

Fulltext PDF

Indian Academy of Sciences (India)

HONG GAO LIU

Saurogobio dabryi Bleeker, 1871 (Chinese lizard gudgeon) is a diploid fish (2n = 50), belongs to the family Cyprinidae, subfamily Gobioninae (Tang et al. 2011) and distributed in the east Asia (Dai and Yang 2002). As an indispensable component of the food web, it is essential for the stabil- ity and integrity of the Yangtze ...

Description of Rhabdochona (Globochona) rasborae sp. n. (Nematoda: Rhabdochonidae) from the freshwater cyprinid fish Rasbora paviana Tirant in southern Thailand

Czech Academy of Sciences Publication Activity Database

Moravec, František; Kamchoo, K.

2012-01-01

Roč. 59, č. 3 (2012), s. 209-215 ISSN 0015-5683 R&D Projects: GA ČR GBP505/12/G112 Institutional support: RVO:60077344 Keywords : parasitic nematode * Rhabdochona * Globochona * freshwater fish * sidestripe rasbora * Cyprinidae * Thailand Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine Impact factor: 2.515, year: 2012 http://folia.paru.cas.cz/detail.php?id=22068

A synoptic review of Caryophyllaeus Gmelin, 1790 (Cestoda: Caryophyllidea), parasites of cyprinid fishes

Czech Academy of Sciences Publication Activity Database

Barčák, D.; Oros, M.; Hanzelová, V.; Scholz, Tomáš

2017-01-01

Roč. 64, AUG 16 (2017), č. článku 027. ISSN 1803-6465 R&D Projects: GA ČR(CZ) GBP505/12/G112 Institutional support: RVO:60077344 Keywords : tapeworms * freshwater fish * Cyprinidae * systematics * identification key * phylogenetic relationships * Palaearctic Region Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine OBOR OECD: Veterinary science Impact factor: 1.082, year: 2016

Résultats ichthyologiques des voyages scientifiques de Monsieur le Professeur Dr. A. W. Nieuwenhuis dans le centre de Bornéo (1898 et 1900)

NARCIS (Netherlands)

Popta, C.M.L.

1905-01-01

Dans quelques genres de Cyprinidae, c.-à-d. le Dangila, l’ Osteochilus et le Crossochilus famille des Cyprininae, qui appartiennent à la sousle nombre des écailles de la ligne latérale est plus petit dans les espèces spéciales que dans les espèces anciennes. Le Tylognathus a augmenté ce nombre de 2

Feed intake and brain neuropeptide Y (NPY) and cholecystokinin (CCK) gene expression in juvenile cobia fed plant-based protein diets with different lysine to arginine ratios.

Science.gov (United States)

Nguyen, Minh Van; Jordal, Ann-Elise Olderbakk; Espe, Marit; Buttle, Louise; Lai, Hung Van; Rønnestad, Ivar

2013-07-01

Cobia (Rachycentron canadum, Actinopterygii, Perciformes;10.5±0.1g) were fed to satiation with three plant-based protein test diets with different lysine (L) to arginine (A) ratios (LL/A, 0.8; BL/A, 1.1; and HL/A, 1.8), using a commercial diet as control for six weeks. The test diets contained 730 g kg(-1) plant ingredients with 505-529 g protein, 90.2-93.9 g lipid kg(-1) dry matter; control diet contained 550 g protein and 95 g lipid kg(-1) dry matter. Periprandial expression of brain NPY and CCK (npy and cck) was measured twice (weeks 1 and 6). At week one, npy levels were higher in pre-feeding than postfeeding cobia for all diets, except LL/A. At week six, npy levels in pre-feeding were higher than in postfeeding cobia for all diets. cck in pre-feeding cobia did not differ from that in postfeeding for all diets, at either time point. Cobia fed LL/A had lower feed intake (FI) than cobia fed BL/A and control diet, but no clear correlations between dietary L/A ratio and FI, growth and expression of npy and cck were detected. The data suggest that NPY serves as an orexigenic factor, but further studies are necessary to describe links between dietary L/A and regulation of appetite and FI in cobia. Copyright © 2013 Elsevier Inc. All rights reserved.

A comparative biochemical profile of some cyprinids fish in Dukan Lake, Kurdistan-Iraq

Science.gov (United States)

Azeez, Darya Mohammed; Mohammed, Sarbaz Ibrahim

2017-09-01

The present study was carried out to demonstrate the baseline values for some serum biochemical parameters for 64 adult freshwater fish including seven species belong to family Cyprinidae, have been collected in Dukan Lake, Kurdistan region-Iraq. Fishes were weighed, measured, and collect blood for blood chemistry. Serum biochemical analyses were determined using (Cobas C 311) full automatic chemical analyzer. The result of comparative study of serum biochemical parameters of all Cyprinidae species showed that serum glucose was (459.10±106.99 mg/dl) and direct bilirubin was (0.056±0.021mg/dl) in Barbus grypus, serum total protein (3.511± 0.0484gm/dl) and HDL (133.11±0.4231mg/dl) in Cyprinus carpio, serum cholesterol (338.33±43.923 mg/dl) and LDL (86.11±11.871mg/dl) in Carassius carassius, serum triglyceride (420.0±28.8mg/dl) and ALK (113.93±20.65U/L) in Chondrostoma regium, serum AST and serum ALT in Capoeta trutta, were significantly higher when compared to other species. In a conclusion there is variation in biochemical values among species of same family.

in ovarian fluid

African Journals Online (AJOL)

Jane

2011-09-28

Sep 28, 2011 ... salmon and trout oocytes can be successfully stored for more times, even for 2 days in Caspian brown trout. (Niksirat et al., 2007a) and for 9 days at 2 to 3°C in rainbow trout (Niksirat et al., 2007b). Kutum (Rutilus frisii kutum) is a cyprinidae endemic to the Caspian Sea. It is a semi-migratory anadromous fish.

The effect of depth, distance from dam and habitat on spatial distribution of fish in an artificial reservoir

Czech Academy of Sciences Publication Activity Database

Prchalová, Marie; Kubečka, Jan; Čech, Martin; Frouzová, Jaroslava; Draštík, Vladislav; Hohausová, Eva; Jůza, Tomáš; Kratochvíl, Michal; Matěna, Josef; Peterka, Jiří; Říha, Milan; Tušer, Michal; Vašek, Mojmír

2009-01-01

Roč. 18, č. 2 (2009), s. 247-260 ISSN 0906-6691 R&D Projects: GA AV ČR(CZ) 1QS600170504; GA ČR(CZ) GA206/07/1392; GA MZe(CZ) QH81046 Institutional research plan: CEZ:AV0Z60170517 Keywords : horizontal distribution * vertical distribution * gillnet * reservoir * Cyprinidae * Percidae * redundancy analysis Subject RIV: EH - Ecology, Behaviour Impact factor: 1.512, year: 2009

Iktiofauna Sungai Sangkir Kabupaten Rokan Hulu Provinsi Riau (Ichthyofauna of Sangkir River, Rokan Hulu District Riau Province

Directory of Open Access Journals (Sweden)

Nunuk Dian Pranata

2016-12-01

Full Text Available This study was conducted in Sangkir river branch of Rokan Kiri river Sangkir village, Rokan Hulu district, Riau Province from May of July 2016. The aim of this study was to inventory the fish species in Sangkir river branch of Rokan Kiri River with direct observation (survey. Five sampling locations were determined purposely based on the environmental condition that could be represented by the river condition. A total of 288 individuals of fish belonging to 3 orders, 7 families, 13 genera and 16 species were recorded in this study, namely Barbodes balleroides, Barbodes gonionotus, Barbichthys leavis, Channa striata, Cyclocheilichthys apogon, Labiobarbus fasciatus, Mystus nigriceps, Ompok eugeneiatus, Osteochilus hasseltii, Osteochilus mycrocephalus, Pangio semicincta, Pristolepis grooti, Thynnichthys polylepis, Trichogaster leerii, Trichogaster trichopterus and Trichopsis vittata. Cyprinidae was the most abundance fish in this study. Penelitian ini telah dilaksanakan di sungai Sangkir, anak sungai Rokan Kiri, desa Sangkir, Kabupaten Rokan Hulu, Provinsi Riau pada bulan Mei sampai Juli 2016. Penelitian ini bertujuan untuk mengetahui jenis-jenis ikan di sungai Sangkir anak Sungai Rokan Kiri dengan metode pengamatan langsung (survei dengan penetapan stasiun pengambilan sampel secara purposive sampling. Penetapan stasiun berdasarkan kondisi lingkungan yang terdiri dari 5 stasiun penelitian. Hasil penelitian  didapatkan sebanyak 288 individu ikan yang terdiri dari 3 ordo, 7 famili 13 genus dan 16 spesies. Spesies yang didapatkan yaitu Barbodes balleroides, Barbodes gonionotus, Barbichthys leavis, Channa striata, Cyclocheilichthys apogon, Labiobarbus fasciatus, Mystus nigriceps, Ompok eugeneiatus, Osteochilus hasseltii, Osteochilus mycrocephalus, Pangio semicincta, Pristolepis grooti, Thynnichthys polylepis Trichogaster leerii, Trichogaster trichopterus dan Trichopsis vittata. Cyprinidae merupakan kelompok ikan yang paling banyak dalam penelitian ini.

The Pet Trade as a Source of Invasive Fish in Taiwan

Directory of Open Access Journals (Sweden)

Shih-Hisung Liang

2006-06-01

Full Text Available In this study, ornamental fish available for purchase at pet stores in Taiwan were compared to those documented as having invaded the island’s ecosystems. In total, 293 pet fish species belonging to 48 families were recorded. The top five families that included the most pet fish species were the Cichilidae (79 species, Callichthyidae (38, Characidae (37, Cyprinidae (20, and Loricariidae (16. Among the 48 families, five families, documented as having invasion records, are the Cichilidae, Cyprinidae, Loricariidae, Belontiidae, and Poeciliidae. Except for the Cichilidae, the proportion of invasive species to total species of other four families were at least equal to or greater than 10%, with the Belontiidae displaying the highest proportion at 66.6%. The Belontiidae also demonstrated a significantly higher rate of documented invasive species than did the other families. Families with a greater number of recorded pet fish species also presented a significant positive correlation with their documented invasive species if the 20 families with only a single surveyed species were excluded. Forcing retailers to foster home program, urging aquariums to display how to eliminate fish escaping from captivity, and instituting a higher custom duty or higher purchasing tax were proposed to eliminate future introductions of pet fish species.

Polypteridae (Actinopterygii: Cladistia) and DANA-SINEs insertions.

Science.gov (United States)

Morescalchi, Maria Alessandra; Barucca, Marco; Stingo, Vincenzo; Capriglione, Teresa

2010-06-01

SINE sequences are interspersed throughout virtually all eukaryotic genomes and greatly outnumber the other repetitive elements. These sequences are of increasing interest for phylogenetic studies because of their diagnostic power for establishing common ancestry among taxa, once properly characterized. We identified and characterized a peculiar family of composite tRNA-derived short interspersed SINEs, DANA-SINEs, associated with mutational activities in Danio rerio, in a group of species belonging to one of the most basal bony fish families, the Polypteridae, in order to investigate their own inner specific phylogenetic relationships. DANA sequences were identified, sequenced and then localized, by means of fluorescent in situ hybridization (FISH), in six Polypteridae species (Polypterus delhezi, P. ornatipinnis, P. palmas, P. buettikoferi P. senegalus and Erpetoichthys calabaricus) After cloning, the sequences obtained were aligned for phylogenetic analysis, comparing them with three Dipnoan lungfish species (Protopterus annectens, P. aethiopicus, Lepidosiren paradoxa), and Lethenteron reissneri (Petromyzontidae)was used as outgroup. The obtained overlapping MP, ML and NJ tree clustered together the species belonging to the two taxonomically different Osteichthyans groups: the Polypteridae, by one side, and the Protopteridae by the other, with the monotypic genus Erpetoichthys more distantly related to the Polypterus genus comprising three distinct groups: P. palmas and P. buettikoferi, P. delhezi and P. ornatipinnis and P. senegalus. In situ hybridization with DANA probes marked along the whole chromosome arms in the metaphases of all the Polypteridae species examined. Copyright © 2010 Elsevier B.V. All rights reserved.

The effect of Ligula intestinalis on blood sex steroid hormones, gonadal tissue and some other biological parameters changes of Chalcalburnus mossulensis in Vahdat dam of Kordestan-Iran

OpenAIRE

Khanghah, Ali Parsa

2010-01-01

Chalcalburnus mossulensis from the cyprinidae family is one of the indigenous fish in Gheshlag Lake of Kordestan-Iran. Ligula intestinalis is one of the infective parasites of this fish. In this study, the effect of this parasite on some biological aspects of this fish like weight, length, PI, CF, GSR, blood sex steroid hormones and gonadal tissue, was investigated. During one year, by seasonal sampling, 144 fish sample from mentioned species were collected using trap net. By considering the ...

Feeding dynamics, consumption rates and daily ration of wahoo Acanthocybium solandri in Indo-Pacific waters.

Science.gov (United States)

Perelman, J N; Schmidt, K N; Haro, I; Tibbetts, I R; Zischke, M T

2017-05-01

This study reports the diet composition of 363 wahoo Acanthocybium solandri captured from the Indo-Pacific. The study also provides the first estimates of consumption and daily ration for the species worldwide, which are important parameters for ecosystem models and may improve ecosystem-based fisheries management. Thirty-four prey taxa were identified from A. solandri stomachs with Scombridae having the highest relative importance. Actinopterygii comprised 96% of the total prey wet mass, of which 29% were epipelagic fishes, with 22% alone from Scombridae. There was no significant relationship between fish size and the size of prey items consumed. Feeding intensity, as measured by stomach fullness, did not significantly differ either among seasons or reproductive activity. The mean daily consumption rate was estimated as 344 g day -1 , which corresponded to a mean daily ration of 2·44% body mass day -1 . The results from this study suggest A. solandri is an opportunistic predator similar to other pelagic piscivores, worldwide. © 2017 The Fisheries Society of the British Isles.

Land, lake, and fish: Investigation of fish remains from Gesher Benot Ya'aqov (paleo-Lake Hula).

Science.gov (United States)

Zohar, Irit; Biton, Rebecca

2011-04-01

The question of whether or not pre-modern hominins were responsible for the accumulation of fish remains is discussed through analyses of remains recovered from two lacustrine facies (I-4 and I-5) from Area A of the Acheulian site of Gesher Benot Ya'aqov (GBY) in the Jordan Rift Valley, Israel. The fish remains provide the first glimpse into the naturally accumulated fish assemblage from the fluctuating shores of a lake that had been continually exploited by early hominins some 780,000 years ago. Preliminary analysis of the remains show that thirteen of the seventeen species native to Lake Hula were identified at GBY. These represent three of the five freshwater fish families native to the lake: Cyprinidae (carps), Cichlidae (tilapini, St. Peter's fish), and Clariidae (catfish). From a taphonomical perspective, a significant difference is found between the two lithofacies (Layers I-4 and I-5) in terms of species composition, richness, diversity, and skeleton completeness. It appears that the fish remains recovered from Layer I-4 (clay) are better preserved than those from Layer I-5 (coquina). In both lithofacies, Cyprinidae are highly abundant while Cichlidae and Clariidae are rare and under-represented, especially when compared to the Lake Hula fishery report from the 1950s. All of these identified species may have contributed significantly to the diet of GBY hominins. Copyright © 2010 Elsevier Ltd. All rights reserved.

Methyltestosterone-induced changes in electro-olfactogram responses and courtship behaviors of cyprinids.

Science.gov (United States)

Belanger, Rachelle M; Pachkowski, Melanie D; Stacey, Norm E

2010-01-01

In the tinfoil barb (Barbonymus schwanenfeldii; family Cyprinidae), we previously found that increased olfactory sensitivity to a female prostaglandin pheromone could induce sexual behavior display in juvenile fish treated with androgens. Here, we determined if this phenomenon is widespread among cyprinid fishes by adding 17alpha-methyltestosterone (MT) to aquaria containing juveniles of 4 cyprinid species (tinfoil barbs; redtail sharkminnows, Epalzeorhynchos bicolor; goldfish, Carassius auratus; zebrafish, Danio rerio) and then using electro-olfactogram (EOG) recordings and behavioral assays to determine if androgen treatment enhances pheromone detection and male sex behaviors. In all 4 cyprinids, MT treatment increased the magnitudes and sensitivities of EOG response to prostaglandins and, consistent with our initial study on tinfoil barbs, did not affect EOG responses to the free and conjugated steroid to which each species is most sensitive. In zebrafish, EOG responses to prostaglandins were similar in MT-treated juveniles and adult males, whereas responses of control (ethanol exposed) fish were similar to those of adult females. Finally, as previously observed in tinfoil barbs, MT treatment of juvenile redtail sharkminnows increased courtship behaviors (nuzzling and quivering) with a stimulus fish. We conclude that androgen-induced increase in olfactory responsiveness to pheromonal prostaglandins is common among the family Cyprinidae. This phenomenon will help us unravel the development of sexually dimorphic olfactory-mediated behavior.

Testicular maturation of Oligosarcus hepsetus (Cuvier (Actinopterygii, Characidae in a brazilian tropical reservoir

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R. N. Santos

Full Text Available Six reproductive classes of male Oligosarcus hepsetus (Cuvier, 1829, a medium-sized carnivorous Characiform species, are described based on macroscopic and histological techniques. A total of 175 individuals were caught monthly between April 2001 and June 2002 in the Lajes Reservoir, Brazil, one of the largest impoundment areas in the state of Rio de Janeiro. The reproductive classes were based upon changes in the testicular morphology and stages of germinative cells, i.e., resting, early maturing, late maturing, mature, partially spent and totally spent. Fish in the resting class showed testes with spermatogonia and spermatocytes along the wall of seminal lobules, while spermatids were present in the lumina of the lobules. During early maturing, active spermatogenesis occurs throughout the testis; in the late maturing and mature classes, the lobules are swollen with sperm that are typical of fish in breeding condition. Spent testes presented seminal lobules with residual spermatozoa, coinciding with decreasing GSI and greatly reduced sperm production. Overall, the testicular morphology and class of maturity development of O. hepsetus in the Lajes reservoir did not differ significantly from those of closely related species in other lentic environments. Lower GSI values in the oligotrophic Lajes reservoir than in other eutrophic natural lakes suggest that this species may be modifying this aspect of its reproductive strategy in response to the artificial environment.

Early ontogeny of Labeo capensis (pisces: Cyprinidae)

African Journals Online (AJOL)

the early development of Indian Labeo species (e.g. Khan. 1925; Ahmad 1944 ...... ber, size or intensity, was helpful in grouping North American cyprinid larvae. .... impregnated eggs of common freshwater fishes of Bengal. Curro Sci. 26: 125 ...

Relação preliminar das espécies de peixes (Pisces, Elasmobranchii, Actinopterygii ameaçadas no Brasil Preliminary list of endangered fish species (Pisces, Elasmobranchii , Actinopterygii in Brazil

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Ricardo S Rosa

1996-01-01

Full Text Available The Brazilian fish fauna is still poorly known with respect to its diversity and conservation status, particularly of freshwater species. Human activities and population growth are rapidly impacting this fauna to an unchecked extent, so that many fish species are presently threatened. Also, some areas have been so critically altered that their fish fauna can no longer be properly inventoried. There is an urgent need to evaluate the conservation status of Brazilian fish species, since none are presently listed as endangered by federal legislation. Based on a literature search and a survey directed to the Neotropical ichthyologists, we present an unofficial list including a total of 78 threatened fish species (12 elasmobranchs and 66 actinopterygians. Of these, sixteen actinopterygian species are listed as endangered, three elasmobranchs and nine actinopterygians as vulnerable, and seven actinopterygians as rare; 40 species either have indeterminate status or are data deficient to yield an adequate assessment, and three species are listed as extinct or possibly extinct.

Fish genomes provide novel insights into the evolution of vertebrate secretin receptors and their ligand.

Science.gov (United States)

Cardoso, João C R; Félix, Rute C; Trindade, Marlene; Power, Deborah M

2014-12-01

The secretin receptor (SCTR) is a member of Class 2 subfamily B1 GPCRs and part of the PAC1/VPAC receptor subfamily. This receptor has long been known in mammals but has only recently been identified in other vertebrates including teleosts, from which it was previously considered to be absent. The ligand for SCTR in mammals is secretin (SCT), an important gastrointestinal peptide, which in teleosts has not yet been isolated, or the gene identified. This study revises the evolutionary model previously proposed for the secretin-GPCRs in metazoan by analysing in detail the fishes, the most successful of the extant vertebrates. All the Actinopterygii genomes analysed and the Chondrichthyes and Sarcopterygii fish possess a SCTR gene that shares conserved sequence, structure and synteny with the tetrapod homologue. Phylogenetic clustering and gene environment comparisons revealed that fish and tetrapod SCTR shared a common origin and diverged early from the PAC1/VPAC subfamily group. In teleosts SCTR duplicated as a result of the fish specific whole genome duplication but in all the teleost genomes analysed, with the exception of tilapia (Oreochromis niloticus), one of the duplicates was lost. The function of SCTR in teleosts is unknown but quantitative PCR revealed that in both sea bass (Dicentrarchus labrax) and tilapia (Oreochromis mossambicus) transcript abundance is high in the gastrointestinal tract suggesting it may intervene in similar processes to those in mammals. In contrast, no gene encoding the ligand SCT was identified in the ray-finned fishes (Actinopterygii) although it was present in the coelacanth (lobe finned fish, Sarcopterygii) and in the elephant shark (holocephalian). The genes in linkage with SCT in tetrapods and coelacanth were also identified in ray-finned fishes supporting the idea that it was lost from their genome. At present SCTR remains an orphan receptor in ray-finned fishes and it will be of interest in the future to establish why SCT was

Fish-T1K (Transcriptomes of 1,000 Fishes) Project: large-scale transcriptome data for fish evolution studies.

Science.gov (United States)

Sun, Ying; Huang, Yu; Li, Xiaofeng; Baldwin, Carole C; Zhou, Zhuocheng; Yan, Zhixiang; Crandall, Keith A; Zhang, Yong; Zhao, Xiaomeng; Wang, Min; Wong, Alex; Fang, Chao; Zhang, Xinhui; Huang, Hai; Lopez, Jose V; Kilfoyle, Kirk; Zhang, Yong; Ortí, Guillermo; Venkatesh, Byrappa; Shi, Qiong

2016-01-01

Ray-finned fishes (Actinopterygii) represent more than 50 % of extant vertebrates and are of great evolutionary, ecologic and economic significance, but they are relatively underrepresented in 'omics studies. Increased availability of transcriptome data for these species will allow researchers to better understand changes in gene expression, and to carry out functional analyses. An international project known as the "Transcriptomes of 1,000 Fishes" (Fish-T1K) project has been established to generate RNA-seq transcriptome sequences for 1,000 diverse species of ray-finned fishes. The first phase of this project has produced transcriptomes from more than 180 ray-finned fishes, representing 142 species and covering 51 orders and 109 families. Here we provide an overview of the goals of this project and the work done so far.

Mitochondrial DNA reveals unexpected diversity of chubs (genus Squalius; Cypriniformes, Actinopterygii in the Adriatic basin

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Ivana Buj

2015-12-01

Full Text Available The genus Squalius comprises more than 40 species inhabiting various freshwater habitats. They are distributed in Europe and Asia, with particularly high diversity recorded in the Mediterranean area. The taxonomic status of many populations is still matter of debate. With this investigation we aimed to help in resolving taxonomic uncertainties of the chubs distributed in the Adriatic basin in Croatia and Bosnia and Herzegovina. Phylogenetic reconstruction based on mitochondrial gene for cytochrome b revealed high diversity of chubs in the investigated area. Two evolutionary independent lineages are revealed: the first one comprising species Sq. svallize, Sq. tenellus, Sq. illyricus and Sq. zrmanjae; whereas the second lineage corresponds with Sq. squalus. High intraspecific structuring of Sq. squalus was detected, implying necessity of taxonomic revision of that species. Based on the obtained results, most important aspects of the evolutionary history of the genus Squalius in the Adriatic basin will be discussed and evolutionary significant units identified.

REARING OF PELED (COREGONUS PELED Gmelin IN POLYCULTURE WITH CYPRINIDS (CYPRINIDAE AND STURGEONS (ACIPENSERIDAE

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G. Kurinenko

2016-03-01

Full Text Available Purpose. To analyze the results of rearing and provide aquaculture-biological characteristic of peled reared in polyculture with sturgeons and cyprinids based on pond technology. Methodology. The material for the studies were fry, young-of-the-year, yearlings and age-1+ peled produced from eggs exported in March 2009 from Russian Federation. Rearing of peled was carried out based on the technology developed by the All-Union Scientific and Research Institute of Pond Fish Culture for coregonids with the use of methodical recommendations on the biotechnology of industrial rearing of seed coregonids. Studies were carried out at the pond fish farm “Korop” of Lviv region. Water supply of rearing ponds was done by self-flow. The investigation of fish diet and hydrobiological studies were carried out using conventional methods. Findings. We performed a study of fish egg incubation and produced larvae with their further rearing in floating cages to the fingerling stage. Rearing of peled in polyculture allows increasing the fish productivity parameters at the first year of rearing by 1.3%, at the second year by 0.9%. Average weights of age-1 and age-1+ peled were 185.3 g and 450 g, respectively. In these rearing conditions, daily growth of the young-of-the-year was within 0.1-1.5 g, age-1+ – 1.1-3.3 g. As a positive result of rearing, we should note high weight gain during winter period that was more than 50%. We also investigated qualitative and quantitative composition of zooplankton and peled juvenile diet. Originality. The works of peled rearing based on pond technology in polyculture with sturgeons and cyprinids were carried out in the conditions of Ukraine for the first time. Practical value. The results of the performed works along with similar previous works on peled rearing in ponds will be used for the creation of methodical recommendations on rearing of peled seeds, which will be used by Ukrainian fish farms in future.

Posthodiplostomatosis in a fishpond in Serbia

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Marković Maja

2012-01-01

Full Text Available Posthodiplostomatosis (black spot disease is a disease of young freshwater fish species of families Cyprinidae and Cobitidae, resulting from infection with metacercaria, which is the penultimate developmental stage of Posthodiplostomum cuticola. Metacercaria give rise to black cysts located primarily in the skin, muscles and on the fins. The disease caused by P. cuticola in certain fish species is first detected in a fishpond in Serbia, as presented in the current work, whilst in natural waters it has been existing for many years. Diagnosis of the infection in the grass carp (Ctenopharyngodon idella and the bighead carp (Aristichthys nobilis was based on the occurrence of dark discolorations and cysts of the parasite on the fins. Cysts measured approximately 1 mm in diameter, were confirmed by histopathological means. Posthodiplostomatosis occurred in fishponds in which preventive measures were not implemented, i.e. where the nurseries were not dried up and mechanically cleaned.

Feeding habits of an endemic fish, Oxygymnocypris stewartii, in the Yarlung Zangbo River in Tibet, China

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Huo, Bin; Xie, Cong Xin; Madenjian, Charles P.; Ma, Bao Shan; Yang, Xue Feng; Huang, Hai Ping

2014-01-01

Feeding habits of Oxygymnocypris stewartii were investigated based on monthly sampling in the Yarlung Zangbo River from August 2008 to August 2009. The gut contents of 194 individuals were analysed and quantified with numerical and gravimetric methods. This species can be considered a generalized and opportunistic predator feeding both on teleosts and aquatic insects. A multivariate analysis revealed noticeable variation in O. stewartii diet composition with fish size and season. The smaller specimens fed primarily on Cobitidae and Hydropsychidae. As they grew, Cyprinidae and Chironomidae larvae became important prey. The preferred food items were teleosts in summer and autumn. For winter and spring, the predominant prey switched to chironomidae larvae. Diet composition did not significantly vary between the sexes. Finally, a significant and positive correlation between predator and prey length was found. These findings provide the fundamental information better understanding the role of this important endemic species in the Yarlung Zangbo River food web.

Barcoding of fresh water fishes from Pakistan.

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Karim, Asma; Iqbal, Asad; Akhtar, Rehan; Rizwan, Muhammad; Amar, Ali; Qamar, Usman; Jahan, Shah

2016-07-01

DNA bar-coding is a taxonomic method that uses small genetic markers in organisms' mitochondrial DNA (mt DNA) for identification of particular species. It uses sequence diversity in a 658-base pair fragment near the 5' end of the mitochondrial cytochrome c oxidase subunit 1 (CO1) gene as a tool for species identification. DNA barcoding is more accurate and reliable method as compared with the morphological identification. It is equally useful in juveniles as well as adult stages of fishes. The present study was conducted to identify three farm fish species of Pakistan (Cyprinus carpio, Cirrhinus mrigala, and Ctenopharyngodon idella) genetically. All of them belonged to family cyprinidae. CO1 gene was amplified. PCR products were sequenced and analyzed by bioinformatic software. Conspecific, congenric, and confamilial k2P nucleotide divergence was estimated. From these findings, it was concluded that the gene sequence, CO1, may serve as milestone for the identification of related species at molecular level.

In vivo and in vitro activities of the seed extract of Piper guineense Schum. and Thonn. against skin and gill monogenean parasites of gold fish (Carassius auratus auratus).

Science.gov (United States)

Ekanem, A P; Wang, M; Simon, J E; Obiekezie, A I; Morah, F

2004-10-01

Methanol extracts of the seeds of Piper guineense (Piperaceae) were active against gold fish (Carassius auratus auratus L. Pisces Cyprinidae) monogenean parasites. The seed extract of P. guineense was administered at different concentrations (0.5-2.0 mg/L) under in vivo and in vitro conditions. There was a higher efficacy of the effects of the extracts against fish parasites under in vitro situations than under in vivo. Three major compounds (piperanine, N-isobutyl (E,E)-2,4 decadienamide and Deltaalpha,beta-dihydrowasanine) were identified from the seed extract of Piper guineense by LC-MS analysis. Copyright 2004 John Wiley & Sons, Ltd.

Complete mitogenomes of two Puntius in Taiwan: P. semifasciolatus and P. snyderi (Cypriniformes: Cyprinidae).

Science.gov (United States)

Jang-Liaw, Nian-Hong; Chang, Chia-Hao; Tsai, Chi-Li

2013-06-01

We sequenced the complete mitochondrial genome of two spotted barbs native to Taiwan: Puntius semifasciolatus and Puntius snyderi. The complete mitochondrial genomes are 16,594 and 16,578 bp in size, respectively. Both of them contain 37 genes coding for 13 proteins, 2 rRNAs, 22 tRNAs, and 1 control region. They share the same gene arrangement pattern that was identical with most vertebrates. Nucleotide sequence divergence (K2P distance) between the two whole mitochondrial genomes was 7.63%. These two spotted barbs show very close relationship based on the comparison of the characters of their mitochondrial genomes.

Sperm motility in fishes. (II) Effects of ions and osmolality: a review.

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Alavi, Sayyed Mohammad Hadi; Cosson, Jacky

2006-01-01

The spermatozoa of most fish species are immotile in the testis and seminal plasma. Therefore, motility is induced after the spermatozoa are released into the aqueous environment during natural reproduction or into the diluent during artificial reproduction. There are clear relationships between seminal plasma composition and osmolality and the duration of fish sperm motility. Various parameters such as ion concentrations (K+, Na+, and Ca2+), osmotic pressure, pH, temperature and dilution rate affect motility. In the present paper, we review the roles of these ions on sperm motility in Salmonidae, Cyprinidae, Acipenseridae and marine fishes, and their relationship with seminal plasma composition. Results in the literature show that: 1. K+ is a key ion controlling sperm motility in Salmonidae and Acipenseridae in combination with osmotic pressure; this control is more simple in other fish species: sperm motility is prevented when the osmotic pressure is high (Cyprinidae) or low (marine fishes) compared to that of the seminal fluid. 2. Cations (mostly divalent, such as Ca2+) are antagonistic with the inhibitory effect of K+ on sperm motility. 3. In many species, Ca2+ influx and K+ or Na+ efflux through specific ionic channels change the membrane potential and eventually lead to an increase in cAMP concentration in the cell, which constitutes the initiation signal for sperm motility in Salmonidae. 4. Media that are hyper- and hypo-osmotic relative to seminal fluid trigger sperm motility in marine and freshwater fishes, respectively. 5. The motility of fish spermatozoa is controlled through their sensitivity to osmolality and ion concentrations. This phenomenon is related to ionic channel activities in the membrane and governs the motility mechanisms of axonemes.

[A catalog of fish specimens preserved within Kunming Institute of Zoology, Chinese Academy of Sciences].

Science.gov (United States)

Du, Li-Na; Chen, Xiao-Yong; Yang, Jun-Xing

2013-08-01

As of 2013, some 178 fish type species and 2131 type specimens belonging to 4 orders and 11 families were currently being preserved at the Kunming Natural History Museum of Zoology, located as art of the Kunming Institute of Zoology, Chinese Academy of Sciences. These specimens were collected from across western China, includingYunnan, Sicuan, Guizhou, Guangxi, Hunan, Chongqi, Gansu and Xinjiang. In general, most species are Cyprinidae (71 species and 1103 specimens), followed by Nemacheilidae (52 species and 556 specimens). For the convenience of research and communication, the present paper presents a detailed list of fish type species preserved in the Kunming Natural History Museum of Zoology.

Estimation of grey seal (Halichoerus grypus diet composition in the Baltic Sea

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Karl Lundström

2007-01-01

Full Text Available We examined the digestive tract contents from 145 grey seals (Halichoerus grypus collected between 2001 and 2004 in the Baltic Sea. We compensated for biases introduced by erosion of otoliths, both by using additional hard-part structures other than otoliths, and species-specific size and numerical correction factors. In the absence of numerical correction factors based on feeding experiments for some species, we used correction factors based on a relationship between otolith recoveryrate and otolith width. A total of 24 prey taxa were identified but only a few species contributed substantially to the diet. The estimated diet composition was, independently of the prey number estimation method and diet composition estimation model used, dominated by herring (Clupea harengus, both by numbers and biomass. In addition to herring, common whitefish (Coregonus lavaretus and sprat (Sprattus sprattus were important prey, but cyprinids (Cyprinidae, eelpout (Zoarces viviparus, flounder (Platichtys flesus and salmon (Salmo salar also contributed significantly. Our results indicated dietary differences between grey seals of different age as well as between seals from the northern (Gulf of Bothnia and the southern (Baltic Proper Baltic Sea.

A new pachyrhizodontid fish (Actinopterygii, Teleostei from the Muhi Quarry (Albian-Cenomanian, Hidalgo, Mexico

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G. Arratia

2018-03-01

Full Text Available A new genus and species – Motlayoichthys sergioi (ZooBank registration: urn:lsid:zoobank.org:pub:2C503741-2362-4234-8CE0-BB7D8BE5A236, urn:lsid:zoobank.org:act:EF5040FD-F306-4C0F-B9DA-2CC696CA349D – from the Cretaceous (Albian-Cenomanian of the Muhi Quarry, Hidalgo, central Mexico is assigned to the family Pachyrhizodontidae based on the presence of the inner premaxillary tooth and a few other cranial characters. Its unique suite of characters, that includes several autapomorphies supports its assignment as a new genus and species, such as the presence of a triangular head with three sides of similar lengths and with its deepest part at the level of the supraoccipital region; the lower jaw projecting anterior to the premaxilla; the ornamentation of cranial bones – especially those of the cheek region – consisting of fine longitudinal crests densely covering the bony surfaces; one or a few deep grooves on the mandibular teeth, which in addition bear acrodin tips ornamented with fine parallel striae; and the position of the dorsal fin, near the posterior margin of the cranium. Motlayoichthys n. gen., together with Michin, Pachyrhizodus, Rhacolepis, and Notelops, is part of the early radiation of pachyrhizodontoids during Albian times.

Lake Tana's piscivorous Barbus (Cyprinidae, Ethiopia) ecology - evolution - exploitation

NARCIS (Netherlands)

Graaf, de M.

2003-01-01

The 15 Barbus species of Lake Tana, a large shallow lake located at an altitude of 1830 m in the north-western highlands of Ethiopia, form the only remaining intact species flock of large (max. 100cm) cyprinid fishes. Lake Tana is the source of the Blue Nile and high waterfalls (40 m) at

Mitochondrial diversity and phylogeography of Acrossocheilus paradoxus (Teleostei: Cyprinidae).

Science.gov (United States)

Ju, Yu-Min; Hsu, Kui-Ching; Yang, Jin-Quan; Wu, Jui-Hsien; Li, Shan; Wang, Wei-Kuang; Ding, Fang; Li, Jun; Lin, Hung-Du

2018-01-31

Mitochondrial DNA cytochrome b sequences (1141 bp) in 229 specimens of Acrossocheilus paradoxus from 26 populations were identified as four lineages. The pairwise genetic distances among these four lineages ranged from 1.57 to 2.37% (mean= 2.00%). Statistical dispersal-vicariance analysis suggests that the ancestral populations were distributed over mainland China and Northern and Western Taiwan. Approximate Bayesian computation approaches show that the three lineages in Taiwan originated from the lineage in mainland China through three colonization routes during two glaciations. The results indicated that during the glaciation and inter-glacial periods, the Taiwan Strait was exposed and sank, which contributed to the dispersion and differentiation of populations. Furthermore, the populations of A. paradoxus colonized Taiwan through a land bridge to the north of the Formosa Bank, and the Miaoli Plateau in Taiwan was an important barrier that limited gene exchange between populations on both the sides.

(Pisces, Cyprinidae) in Wuras Dam, a shallow, turbid impoundment

African Journals Online (AJOL)

tooname in liggaamsmassa. Suksesvolle voortplanting is afhanklik van geskikte vloedtoostande gedurende die brooiseisoen wat vanaf November tot Maart of April strek. Die vis het blykbaar in. Wurasdam gebrooi. AI die wyfies het nie gelyktydig kuitgeskiet nie en daar is aanduidings dat individue meer as een maal per sei-.

(Pisces, Cyprinidae) from the eastern Cape Province, South Africa

African Journals Online (AJOL)

1990-03-05

Mar 5, 1990 ... small, aligned in regular rows, indistinct on nape and embedded between pectoral fins and antero-ventral region. .... major row teeth of Barbus omfltolicus sp.nov. B - Posterior view of the right pharyngeal bone and teeth of B. onwtoiicus sp.nov. Scale bar is 1 mm. 191. Figure 4 The nuptial tubercles on the ...

Evolutionary Trends of the Pharyngeal Dentition in Cypriniformes (Actinopterygii: Ostariophysi)

OpenAIRE

Pasco-Viel, Emmanuel; Charles, Cyril; Chevret, Pascale; Semon, Marie; Tafforeau, Paul; Viriot, Laurent; Laudet, Vincent

2010-01-01

Background : The fish order Cypriniformes is one of the most diverse ray-finned fish groups in the world with more than 3000 recognized species. Cypriniformes are characterized by a striking distribution of their dentition: namely the absence of oral teeth and presence of pharyngeal teeth on the last gill arch (fifth ceratobranchial). Despite this limited localisation, the diversity of tooth patterns in Cypriniformes is astonishing. Here we provide a further description of this diversity usin...

Evolutionary trends of the pharyngeal dentition in Cypriniformes (Actinopterygii: Ostariophysi.

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Emmanuel Pasco-Viel

Full Text Available BACKGROUND: The fish order Cypriniformes is one of the most diverse ray-finned fish groups in the world with more than 3000 recognized species. Cypriniformes are characterized by a striking distribution of their dentition: namely the absence of oral teeth and presence of pharyngeal teeth on the last gill arch (fifth ceratobranchial. Despite this limited localisation, the diversity of tooth patterns in Cypriniformes is astonishing. Here we provide a further description of this diversity using X-ray microtomography and we map the resulting dental characters on a phylogenetic tree to explore evolutionary trends. RESULTS: We performed a pilot survey of dental formulae and individual tooth shapes in 34 adult species of Cypriniformes by X-ray microtomography (using either conventional X-ray machine, or synchrotron microtomography when necessary or by dissecting. By mapping morphological results in a phylogenetic tree, it emerges that the two super-families Cobitoidea and Cyprinoidea have followed two distinct evolutionary pathways. Furthermore, our analysis supports the hypothesis of a three-row dentition as ancestral for Cyprinoidea and a general trend in tooth row reduction in most derived lineages. Yet, this general scheme must be considered with caution as several events of tooth row gain and loss have occurred during evolutionary history of Cyprinoidea. SIGNIFICANCE: Dentition diversity in Cypriniformes constitutes an excellent model to study the evolution of complex morphological structures. This morphological survey clearly advocates for extending the use of X-ray microtomography to study tooth morphology in Cypriniformes. Yet, our survey also underlines that improved knowledge of Cypriniformes life traits, such as feeding habits, is required as current knowledge is not sufficient to conclude on the link between diet and dental morphology.

Molecular Phylogeny and Zoogeography of the Capoeta damascina Species Complex (Pisces: Teleostei: Cyprinidae.

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Nisreen Alwan

Full Text Available Capoeta damascina was earlier considered by many authors as one of the most common freshwater fish species found throughout the Levant, Mesopotamia, Turkey, and Iran. However, owing to a high variation in morphological characters among and within its various populations, 17 nominal species were described, several of which were regarded as valid by subsequent revising authors. Capoeta damascina proved to be a complex of closely related species, which had been poorly studied. The current study aims at defining C. damascina and the C. damascina species complex. It investigates phylogenetic relationships among the various members of the C. damascina complex, based on mitochondrial and nuclear DNA sequences. Phylogenetic relationships were projected against paleogeographical events to interpret the geographic distribution of the taxa under consideration in relation to the area's geological history. Samples were obtained from throughout the geographic range and were subjected to genetic analyses, using two molecular markers targeting the mitochondrial cytochrome oxidase I (n = 103 and the two adjacent divergence regions (D1-D2 of the nuclear 28S rRNA genes (n = 65. Six closely related species were recognized within the C. damascina complex, constituting two main lineages: A western lineage represented by C. caelestis, C. damascina, and C. umbla and an eastern lineage represented by C. buhsei, C. coadi, and C. saadii. The results indicate that speciation of these taxa is rather a recent event. Dispersal occurred during the Pleistocene, resulting in present-day distribution patterns. A coherent picture of the phylogenetic relationships and evolutionary history of the C. damascina species complex is drawn, explaining the current patterns of distribution as a result of paleogeographic events and ecological adaptations.

Molecular Phylogeny and Zoogeography of the Capoeta damascina Species Complex (Pisces: Teleostei: Cyprinidae).

Science.gov (United States)

Alwan, Nisreen; Esmaeili, Hamid-Reza; Krupp, Friedhelm

2016-01-01

Capoeta damascina was earlier considered by many authors as one of the most common freshwater fish species found throughout the Levant, Mesopotamia, Turkey, and Iran. However, owing to a high variation in morphological characters among and within its various populations, 17 nominal species were described, several of which were regarded as valid by subsequent revising authors. Capoeta damascina proved to be a complex of closely related species, which had been poorly studied. The current study aims at defining C. damascina and the C. damascina species complex. It investigates phylogenetic relationships among the various members of the C. damascina complex, based on mitochondrial and nuclear DNA sequences. Phylogenetic relationships were projected against paleogeographical events to interpret the geographic distribution of the taxa under consideration in relation to the area's geological history. Samples were obtained from throughout the geographic range and were subjected to genetic analyses, using two molecular markers targeting the mitochondrial cytochrome oxidase I (n = 103) and the two adjacent divergence regions (D1-D2) of the nuclear 28S rRNA genes (n = 65). Six closely related species were recognized within the C. damascina complex, constituting two main lineages: A western lineage represented by C. caelestis, C. damascina, and C. umbla and an eastern lineage represented by C. buhsei, C. coadi, and C. saadii. The results indicate that speciation of these taxa is rather a recent event. Dispersal occurred during the Pleistocene, resulting in present-day distribution patterns. A coherent picture of the phylogenetic relationships and evolutionary history of the C. damascina species complex is drawn, explaining the current patterns of distribution as a result of paleogeographic events and ecological adaptations.

First record of the Alboran dragonet, Protogrammus alboranensis (Actinopterygii: Callionymiformes: Callionymidae), from the Balearic Islands (western Mediterranean)

OpenAIRE

Fricke, R. (Ronald); Ordines, F. (Francesc)

2017-01-01

The Alboran dragonet, Protogrammus alboranensis Fricke, Ordines, Farias et García-Ruiz, 2016, was originally described based on four specimens from Alboran Island, Spain, south-western Mediterranean, collected in 2014 and 2015. This species was previously considered to be endemic to Alboran Island. A surprising new record of this rare species from the Balearic Islands is reported here Versión del editor

Functional feeding traits as predictors of invasive success of alien freshwater fish species using a food-fish model.

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Leopold A J Nagelkerke

Full Text Available Invasions of Ponto-Caspian fish species into north-western European river basins accelerated since the opening of the Rhine-Main-Danube Canal in 1992. Since 2002, at least five Ponto-Caspian alien fish species have arrived in The Netherlands. Four species belong to the Gobiidae family (Neogobius fluviatilis, Neogobius melanostomus, Ponticola kessleri, and Proterorhinus semilunaris and one to the Cyprinidae family (Romanogobio belingi. These species are expected to be potentially deleterious for the populations of four native benthic fish species: Gobio gobio (Cyprinidae, Barbatula barbatula (Nemacheilidae, Cottus perifretum, and C. rhenanus (Cottidae. Invasion success may be dependent on competitive trophic interactions with native species, which are enabled and/or constrained by feeding-related morphological traits. Twenty-two functional feeding traits were measured in nine species (in total 90 specimens. These traits were quantitatively linked to the mechanical, chemical and behavioral properties of a range of aquatic resource categories, using a previously developed food-fish model (FFM. The FFM was used to predict the trophic profile (TP of each fish: the combined capacities to feed on each of the resource types. The most extreme TPs belonged to three alien species, indicating that they were most specialized among the studied species. Of these three, only P. kessleri overlapped with the two native Cottus species, indicating potential trophic competition. N. fluviatilis and R. belingi did not show any overlap, indicating that there is low trophic competition. The two remaining alien goby species (N. melanostomus and P. semilunaris had average TPs and could be considered generalist feeders. They overlapped with each other and with G. gobio and B. barbatula, indicating potential trophic competition. This study suggests that both generalist and specialist species can be successful invaders. Since the FFM predicts potential interactions between

Functional feeding traits as predictors of invasive success of alien freshwater fish species using a food-fish model.

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Nagelkerke, Leopold A J; van Onselen, Eline; van Kessel, Nils; Leuven, Rob S E W

2018-01-01

Invasions of Ponto-Caspian fish species into north-western European river basins accelerated since the opening of the Rhine-Main-Danube Canal in 1992. Since 2002, at least five Ponto-Caspian alien fish species have arrived in The Netherlands. Four species belong to the Gobiidae family (Neogobius fluviatilis, Neogobius melanostomus, Ponticola kessleri, and Proterorhinus semilunaris) and one to the Cyprinidae family (Romanogobio belingi). These species are expected to be potentially deleterious for the populations of four native benthic fish species: Gobio gobio (Cyprinidae), Barbatula barbatula (Nemacheilidae), Cottus perifretum, and C. rhenanus (Cottidae). Invasion success may be dependent on competitive trophic interactions with native species, which are enabled and/or constrained by feeding-related morphological traits. Twenty-two functional feeding traits were measured in nine species (in total 90 specimens). These traits were quantitatively linked to the mechanical, chemical and behavioral properties of a range of aquatic resource categories, using a previously developed food-fish model (FFM). The FFM was used to predict the trophic profile (TP) of each fish: the combined capacities to feed on each of the resource types. The most extreme TPs belonged to three alien species, indicating that they were most specialized among the studied species. Of these three, only P. kessleri overlapped with the two native Cottus species, indicating potential trophic competition. N. fluviatilis and R. belingi did not show any overlap, indicating that there is low trophic competition. The two remaining alien goby species (N. melanostomus and P. semilunaris) had average TPs and could be considered generalist feeders. They overlapped with each other and with G. gobio and B. barbatula, indicating potential trophic competition. This study suggests that both generalist and specialist species can be successful invaders. Since the FFM predicts potential interactions between species, it

DNA barcoding in Mexico: an introduction.

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Elías-Gutiérrez, M; León-Regagnon, V

2013-11-01

DNA barcoding has become an important current scientific trend to the understanding of the world biodiversity. In the case of mega-diverse hot spots like Mexico, this technique represents an important tool for taxonomists, allowing them to concentrate in highlighted species by the barcodes instead of analyzing entire sets of specimens. This tendency resulted in the creation of a national network named Mexican Barcode of Life (MEXBOL) which main goals are to train students, and to promote the interaction and collective work among researchers interested in this topic. As a result, the number of records in the Barcode of Life Database (BOLD) for some groups, such as the Mammalia, Actinopterygii, Polychaeta, Branchiopoda, Ostracoda, Maxillopoda, Nematoda, Pinophyta, Ascomycota and Basidiomycota place Mexico among the top ten countries in the generation of these data. This special number presents only few of the many interesting findings in this region of the world, after the use of this technique and its integration with other methodologies. © 2013 John Wiley & Sons Ltd.

A new species of dwarf sea bass, genus Serranus (Serranidae: Actinopterygii, from the southwestern Atlantic Ocean

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Alfredo Carvalho Filho

Full Text Available Serranus aliceae n. sp. is described from Rio de Janeiro and Espírito Santo States, southeastern Brazilian coast. The species is readily distinguished from its congeners by the following combination of characters: scales around the caudal peduncle 20 or 21; total gill rakers on first branchial arch 23-29; cheek-scales rows 5 or 6; and by the coloration of live specimens, which are reddish with a broad, conspicuous, white stripe from post-orbital region to the caudal-fin base and a white abdomen. The new species apparently inhabits the deeper (30 or more meters portions of reef environments along the subtropical Brazilian coast, and is possibly associated with upwelling cold-water masses. The species was observed hovering above rocky bottoms, feeding on micro-crustaceans, squid larvae, and zooplankton. This new species increases to eight the number of valid Serranus species recorded in the southwestern Atlantic.

Tempo and mode of recurrent polyploidization in the Carassius auratus species complex (Cypriniformes, Cyprinidae).

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Luo, J; Gao, Y; Ma, W; Bi, X-y; Wang, S-y; Wang, J; Wang, Y-q; Chai, J; Du, R; Wu, S-f; Meyer, A; Zan, R-g; Xiao, H; Murphy, R W; Zhang, Y-p

2014-04-01

Polyploidization is an evolutionarily rare but important mechanism in both plants and animals because it increases genetic diversity. Goldfish of the Carassius auratus species complex can be tetraploids, hexaploids and octaploids. Polyploidization events have occurred repeatedly in goldfish, yet the extent of this phenomenon and its phyletic history are poorly understood. We explore the origin, tempo and frequency of polyploidization in Chinese and Japanese goldfish using both mitochondrial (mtDNA) and nuclear DNA sequences from up to 1202 individuals including the outgroup taxon, Cyprinus carpio. Analyses of de novo nuclear gene data resolve two clusters of alleles and the pattern supports the prior hypothesis of an ancient allotetraploidization for Carassius. Alleles shared by tetraploid and hexaploid individuals indicate recent autoploidizations within the C. auratus complex. Sympatric tetraploids and hexaploids share mtDNA haplotypes and these frequently occur independently within six well-supported lineages and sublineages on a small spatial scale. Gene flow estimates (Fst values) indicate that hexaploids differ only slightly from sympatric tetraploids, if at all. In contrast, allopatric populations of tetraploids and hexaploids differ from one another to a far greater extent. Gene flow between sampled localities appears to be limited. Coalescence-based time estimations for hexaploids reveal that the oldest lineage within any sampled locality is around one million years old, which is very young. Sympatric, recurrent autoploidization occurs in all sampled populations of the C. auratus complex. Goldfish experience polyploidization events more frequently than any other vertebrate.

Spawning seasons of Rasbora tawarensis (Pisces: Cyprinidae in Lake Laut Tawar, Aceh Province, Indonesia

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Musman Musri

2010-05-01

Full Text Available Abstract Background Rasbora tawarensis is an endemic freshwater fish in Lake Laut Tawar, Aceh Province, Indonesia. Unfortunately, its status is regarded as critical endangered with populations decreasing in recent years. To date no information on the spawning activities of the fish are available. Therefore, this study provides a contribution to the knowledge on reproductive biology of R. tawarensis especially on spawning seasons as well as basic information for conservation of the species. Methods Monthly sampling was conducted from April 2008 to March 2009 by using selective gillnets. The gonadosomatic index, size composition and sex ratio were assessed. The gonadal development was evaluated based on macroscopic and microscopic examinations of the gonads. Results The gonadosomatic index (GSI varied between 6.65 to 18.16 in female and 4.94 to 8.56 for male. GSI of the female R. tawarensis was higher in March, September and December indicating the onset of reproductive seasons, the GSI and oocyte size being directly correlated with gonadal development stages. Although, a greater proportion of mature male than female was detected during the study, the sex ratio showed that the overall number of female was higher than male. The ovaries had multiple oocyte size classes at every stage of gonadal development, thus R. tawarensis can be classified as a group synchronous spawner or a fractional multiple spawner. Conclusion The spawning seasons of R. tawarensis were three times a year and September being the peak of the reproductive season and the female was the predominant sex. This species is classified as a group synchronous spawner.

THREATENED FISHES OF THE WORLD: Chondrostoma kinzelbachi KRUPP, 1985 (CYPRINIDAE

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Gulnaz Özcan

2013-01-01

Full Text Available Orontes nase, Chondrostoma kinzelbachi is an endangered freshwater fish species in Turkey and Syria. Populations are declining due to dam construction and water pollution. Orontes nase populations should be completely protected.

Mahseers genera Tor and Neolissochilus (Teleostei: Cyprinidae) from southern Vietnam.

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Hoàng, Huy Đức; Phạm, Hùng Mạnh; Durand, Jean-Dominique; Trần, Ngân Trọng; Phan, Phúc Đình

2015-08-25

Two new species and two new basin records of mahseers in the genera Tor and Neolissochilus are described from the upper Krong No and middle Đồng Nai drainages of the Langbiang Plateau in southern Vietnam. These new species and new records are known from streams and rivers in montane mixed pine and evergreen forests between 140 and 1112 m. Their populations are isolated in the Sre Pok River of the Mekong basin, the middle of the Đồng Nai basin, and the An Lão River. Both new species are differentiated from their congeners by a combination of the following characters: 23-24 lateral scales, 9-10 predorsal scales, 2/7 or 1/8 pelvic-fin rays, mouth position, median lobe of lower lip, rostral hood, colour in life and by divergent mitochondrial DNA. Tor mekongensis sp. nov. is differentiated from Tor dongnaiensis sp. nov. by the number of transverse scale rows (3/1/2 vs. 4/1/2), number of pelvic-fin rays (2/7 vs. 1/8), a blunt rostral hood vs. pointed, caudal-fin lobes that are equal vs. unequal, and by mitochondrial DNA (0.7% sequence divergence). Molecular evidence identifies both species as members of the genus Tor and distinct from all congeners sampled (uncorrected sequence divergences >1.9% for all Tor species for which homologous COI sequences are available). Tor sinensis is recorded in the Krong No and the Sre Pok rivers, further south of its known distribution. Polymorphism is described in Neolissochilus stracheyi with a Tor-like morph and a Neolissochilus-like morph.

Preliminary list of endangered fish species (Pisces, Elasmobranchii , Actinopterygii) in Brazil

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Rosa, Ricardo S; Menezes, Naércio A

1996-01-01

The Brazilian fish fauna is still poorly known with respect to its diversity and conservation status, particularly of freshwater species. Human activities and population growth are rapidly impacting this fauna to an unchecked extent, so that many fish species are presently threatened. Also, some areas have been so critically altered that their fish fauna can no longer be properly inventoried. There is an urgent need to evaluate the conservation status of Brazilian fish species, since none are...

West Pike Story: a dated phylogeography of Esox spp. (Actinopterygii, Esocidae

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Gael P. J. Denys

2015-11-01

The results distinguish the 3 pike species as well as the 3 lineages of E. lucius from Skog et al. (2014. The presence of individuals from the South-European and circumpolar lineages might result from stocking operations. Finally, molecular dating with reanalysis old fossil calibrations places the European pikes diversification during the late Miocene (E. aquitanicus vs. the others, the late Pliocene (E. cisalpinus vs. E. lucius, and the Pleistocene ice ages (E. lucius lineages. Pike restocking should take into account the genetics of the fish in order to preserve these species with high economical and patrimonial value.

Combining morphology and genetics in resolving taxonomy--a systematic revision of spined loaches (Genus Cobitis; Cypriniformes, Actinopterygii in the Adriatic watershed.

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Ivana Buj

Full Text Available Taxonomic investigation of spined loaches from Dalmatia and Herzegovina was conducted on specimens from 14 localities. The results of the detailed morphological investigations were combined with genetic data (based on one mitochondrial and two nuclear genes in order to resolve the taxonomic status of each Cobitis population. Among the investigated features of external morphology, the appearance of spots on the caudal fin base turned out to have the greatest diagnostic value. Furthermore, the number of branched fin rays enabled the discrimination of several species. No morphometric character alone could ensure determination of any Cobitis species. Nevertheless, groups of populations that are more similar in their body shapes correspond to mitochondrial phylogenetic lineages. Based on molecular genetic markers, Dalmatian and Herzegovinian spined loaches form independent lineages inside the Adriatic phylogenetic group. Mitochondrial DNA phylogenetic reconstruction revealed six monophyletic lineages, corresponding to six species distributed in the investigated area. The population distributed in Mostarsko blato karstic field in Bosnia and Herzegovina is described as a new species based on a unique combination of morphological characters: a single triangular Canestrini scale; usually 51/2 branched anal fin rays, 61/2 branched dorsal fin rays, 14 branched caudal fin rays; no spots in the surface pigmentation layer on the caudal fin base; scales on the body very small.

[Species composition and geographical distribution of threatened fishes in Yunnan Province of Southwest China].

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Zhang, Qian; Zhong, Jin-Xin

2013-05-01

Based on the related published papers, and by using Geographic Information System (ArcGIS 9.3), this paper analyzed the species composition and geographical distribution of threatened fishes in Yunnan Province of Southwest China. There were 83 threatened species living in the Province, belonging to 5 orders, 13 families, and 47 genera. Cypriniformes was absolutely dominant, with 64 species, followed by Siluriformes, with 16 species. Cyprinidae fishes had 51 species, accounting for 79.7% of Cypriniformes. The most species of Cyprinid fishes were of Barbinae (14 species), Cyprininae (10 species), and Cultrinae (10 species). The threatened fishes could be divided into two zoogeographical regions, i. e., Tibetan Plateau region and Oriental region, and their species composition and geographical distribution were resulted from the historical evolution adapted to the related environments. Whatever in rivers and in lakes, the Cyprinid fishes were both absolutely dominant, occupying 36.1% and 31.3% of the total, respectively. The Cyprinid fishes in rivers were mostly of endangered species, while those in lakes were mostly of vulnerable species. The factors affecting the threatened fishes in the Province were discussed from the two aspects of geodynamic evolution and present situation.

Morphological and genetic evidence for multiple evolutionary distinct lineages in the endangered and commercially exploited red lined torpedo barbs endemic to the Western Ghats of India.

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John, Lijo; Philip, Siby; Dahanukar, Neelesh; Anvar Ali, Palakkaparambil Hamsa; Tharian, Josin; Raghavan, Rajeev; Antunes, Agostinho

2013-01-01

Red lined torpedo barbs (RLTBS) (Cyprinidae: Puntius) endemic to the Western Ghats Hotspot of India, are popular and highly priced freshwater aquarium fishes. Two decades of indiscriminate exploitation for the pet trade, restricted range, fragmented populations and continuing decline in quality of habitats has resulted in their 'Endangered' listing. Here, we tested whether the isolated RLTB populations demonstrated considerable variation qualifying to be considered as distinct conservation targets. Multivariate morphometric analysis using 24 size-adjusted characters delineated all allopatric populations. Similarly, the species-tree highlighted a phylogeny with 12 distinct RLTB lineages corresponding to each of the different riverine populations. However, coalescence-based methods using mitochondrial DNA markers identified only eight evolutionarily distinct lineages. Divergence time analysis points to recent separation of the populations, owing to the geographical isolation, more than 5 million years ago, after the lineages were split into two ancestral stocks in the Paleocene, on north and south of a major geographical gap in the Western Ghats. Our results revealing the existence of eight evolutionarily distinct RLTB lineages calls for the re-determination of conservation targets for these cryptic and endangered taxa.

Morphological and genetic evidence for multiple evolutionary distinct lineages in the endangered and commercially exploited red lined torpedo barbs endemic to the Western Ghats of India.

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Lijo John

Full Text Available Red lined torpedo barbs (RLTBS (Cyprinidae: Puntius endemic to the Western Ghats Hotspot of India, are popular and highly priced freshwater aquarium fishes. Two decades of indiscriminate exploitation for the pet trade, restricted range, fragmented populations and continuing decline in quality of habitats has resulted in their 'Endangered' listing. Here, we tested whether the isolated RLTB populations demonstrated considerable variation qualifying to be considered as distinct conservation targets. Multivariate morphometric analysis using 24 size-adjusted characters delineated all allopatric populations. Similarly, the species-tree highlighted a phylogeny with 12 distinct RLTB lineages corresponding to each of the different riverine populations. However, coalescence-based methods using mitochondrial DNA markers identified only eight evolutionarily distinct lineages. Divergence time analysis points to recent separation of the populations, owing to the geographical isolation, more than 5 million years ago, after the lineages were split into two ancestral stocks in the Paleocene, on north and south of a major geographical gap in the Western Ghats. Our results revealing the existence of eight evolutionarily distinct RLTB lineages calls for the re-determination of conservation targets for these cryptic and endangered taxa.

Molecular phylogeny of the tribe Torini Karaman, 1971 (Actinopterygii: Cypriniformes) from the Middle East and North Africa.

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Borkenhagen, Kai

2017-02-22

Freshwater fishes of the cyprinid tribe Torini are widespread in Africa the Middle East and Indomalaya. The relationships of Middle-Eastern Torini are analysed based on mitochondrial markers (Cyt b, ND4) of the majority of relevant species. I present a larely well resolved phylogeny, which confirms the validity of the morphologically defined genera Arabibarbus, Carasobarbus, Mesopotamichthys and Pterocapoeta. The Torini originated in Indomalaya and colonised Africa via the Middle East. Morocco was colonised two times independently, first from sub-Saharan Africa and secondly along the southern margin of the Mediterranean Sea. The Tigris-Euphrates system is an important crossroad for the colonisation of the Jordan River, the Orontes River and the watercourses of the Arabian Peninsula by freshwater fishes. The Jordan lost its connection to the Euphrates earlier than the Orontes. The Arabian Peninsula was colonised from the Tigris-Euphrates system in at least two independent events.

Effects of Malathion Acute Toxicity on Behavioral and Haematological Parameters in Capoeta damascina (Cypriniformes: Cyprinidae

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Saeed Shahbazi

2015-07-01

Full Text Available   The present study investigated the effects of acute toxicity of malathion on behavioral and haematological parameters in the cyprinid Capoeta damascina. The specimens were collected from the Kordan River, Karaj, Iran in August, 2014 and were exposed to different concentrations of malathion at the laboratory (24, 48, 72 mg L‑1 based on 96h-LC (10; 30; 50; 90 which was 6.08 (5.22-7.18 mg L-1. The animals were then exposed to 0.76, 1.00 and 1.52 mg L-1 of malathion for 10 days. Blood samples were collected in days 1, 5 and 10. Red blood cell (RBC, white blood cell (WBC, hemoglobin (Hb, hematocrit (PVC, mean corpuscular volume (MCV, mean corpuscular hemoglobin (MCH, and mean corpuscular hemoglobin concentration (MCHC were measured. Behavioral abnormalities were observed in fishes exposed to high levels of malathion. The specimens exposed to malathion had significantly lower RBC, WBC, Hb, PVC but higher MCV and MCH than those of the control group. No significant difference was detected in MCHC the exposed and control specimens. Hematological parameters (except MCHC were significantly correlated with exposure time. In conclusion, malathion showed extensive haematological effects on C. damascina that might be used as bioindicator of this pesticide in flowing waters.  

Threatened species richness along a Himalayan elevational gradient: quantifying the influences of human population density, range size, and geometric constraints.

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Paudel, Prakash Kumar; Sipos, Jan; Brodie, Jedediah F

2018-02-07

A crucial step in conserving biodiversity is to identify the distributions of threatened species and the factors associated with species threat status. In the biodiversity hotspot of the Himalaya, very little is known about which locations harbour the highest diversity of threatened species and whether diversity of such species is related to area, mid-domain effects (MDE), range size, or human density. In this study, we assessed the drivers of variation in richness of threatened birds, mammals, reptiles, actinopterygii, and amphibians along an elevational gradient in Nepal Himalaya. Although geometric constraints (MDE), species range size, and human population density were significantly related to threatened species richness, the interaction between range size and human population density was of greater importance. Threatened species richness was positively associated with human population density and negatively associated with range size. In areas with high richness of threatened species, species ranges tend to be small. The preponderance of species at risk of extinction at low elevations in the subtropical biodiversity hotspot could be due to the double impact of smaller range sizes and higher human density.

Immunocytochemical identification of adenohypophyseal cells in the pirarucu (Arapaima gigas), an Amazonian basal teleost.

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Borella, M I; Venturieri, R; Mancera, J M

2009-03-01

The adenohypophysis (AH) of juvenile pirarucu (Arapaima gigas), a representative species of the Osteoglossomorpha (bonytongue fishes, one of the oldest living groups of the teleosts), was studied using histochemical and immunocytochemical methods. The AH is comprised of the pars distalis (PD), without a clear distinction between rostral pars distalis (RPD) and proximal pars distalis (PPD), and the pars intermedia (PI). The neurohypophysis (NH) is positioned on top of the PD and penetrates and branches into the PI. In the most rostral dorsal portion of the PD, adrenocorticotropic cells and fusiform gonadotropic cells were found. In the central PD, scarce prolactin-producing cells and growth-hormone-producing cells were located mainly in the dorsal part, whereas round gonadotropic cells were abundant in the ventral portion of this region. Human thyrotropin immunoreactive cells were not found in the entire AH. In the PI, melanotropic, some adrenocorticotropic, and somatolactin-producing cells were located intermingled surrounding the neurohypophyseal branches. Our results showed that the A. gigas pituitary has some basal characteristics between the ancient Actinopterygii and the more derived teleosts.

Devario in Bangladesh: Species diversity, sibling species, and introgression within danionin cyprinids (Teleostei: Cyprinidae: Danioninae)

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Rahman, Md. Mizanur; Norén, Michael; Mollah, Abdur Rob

2017-01-01

Four species of Devario are recorded from Bangladesh: D. aequipinnatus, D. anomalus, D. coxi, new species, and D. devario. Devario aequipinnatus has a wide distribution in northern India and Bangladesh. Devario coxi, from southeastern Bangladesh near Cox’s Bazar, differs from D. aequipinnatus in mtDNA (COI, p-distance 1.8%), colouration, proportional measurements, and meristics. The minor morphological differences and low frequency of overlapping meristics suggest relatively recent separation of D. coxi from other D. aequipinnatus. Devario anomalus occurs only in southeastern Bangladesh and is here reported from localities in addition to the type locality. It differs from the similar D. xyrops in adjacent Myanmar by slender body shape and by 2.3% p-distance in the COI gene. Specimens of D. anomalus from the Sangu River were found to have the mitochondrial genome of D. aequipinnatus from Bangladesh, but agree with other D. anomalus in the nuclear RAG1 gene. Devario devario has a wide distribution on the Indian Peninsula and border regions; in Bangladesh it is restricted in distribution to the Ganga, Brahmaputra, and Meghna drainages. Reports of D. assamensis and D. malabaricus from Bangladesh are misidentifications. Perilampus ostreographus M’Clelland, 1839, is tentatively synonymized with D. aequipinnatus. Phylogenetic analysis of 14 species of striped devarios based on the COI gene results in a polytomy with four unresolved clades. Devario deruptotalea from the Chindwin basin is the sister group of D. aequipinnatus+D. coxi. Devario devario is the sistergroup of D. xyrops+D. anomalus. PMID:29166410

The Key Role of Epigenetics in the Persistence of Asexual Lineages

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Emilie Castonguay

2012-01-01

Full Text Available Asexual organisms, often perceived as evolutionary dead ends, can be long-lived and geographically widespread. We propose that epigenetic mechanisms could play a crucial role in the evolutionary persistence of these lineages. Genetically identical organisms could rely on phenotypic plasticity to face environmental variation. Epigenetic modifications could be the molecular mechanism enabling such phenotypic plasticity; they can be influenced by the environment and act at shorter timescales than mutation. Recent work on the asexual vertebrate Chrosomus eos-neogaeus (Pisces: Cyprinidae provides broad insights into the contribution of epigenetics in genetically identical individuals. We discuss the extension of these results to other asexual organisms, in particular those resulting from interspecific hybridizations. We finally develop on the evolutionary relevance of epigenetic variation in the context of heritability.

Comparative analysis reveals that polyploidy does not decelerate diversification in fish.

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Zhan, S H; Glick, L; Tsigenopoulos, C S; Otto, S P; Mayrose, I

2014-02-01

While the proliferation of the species-rich teleost fish has been ascribed to an ancient genome duplication event at the base of this group, the broader impact of polyploidy on fish evolution and diversification remains poorly understood. Here, we investigate the association between polyploidy and diversification in several fish lineages: the sturgeons (Acipenseridae: Acipenseriformes), the botiid loaches (Botiidae: Cypriniformes), Cyprininae fishes (Cyprinidae: Cypriniformes) and the salmonids (Salmonidae: Salmoniformes). Using likelihood-based evolutionary methodologies, we co-estimate speciation and extinction rates associated with polyploid vs. diploid fish lineages. Family-level analysis of Acipenseridae and Botiidae revealed no significant difference in diversification rates between polyploid and diploid relatives, while analysis of the subfamily Cyprininae revealed higher polyploid diversification. Additionally, order-level analysis of the polyploid Salmoniformes and its diploid sister clade, the Esociformes, did not support a significantly different net diversification rate between the two groups. Taken together, our results suggest that polyploidy is generally not associated with decreased diversification in fish - a pattern that stands in contrast to that previously observed in plants. While there are notable differences in the time frame examined in the two studies, our results suggest that polyploidy is associated with different diversification patterns in these two major branches of the eukaryote tree of life. © 2014 The Authors. Journal of Evolutionary Biology © 2014 European Society For Evolutionary Biology.

A new saurichthyiform (Actinopterygii with a crushing feeding mechanism from the Middle Triassic of Guizhou (China.

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Feixiang Wu

Full Text Available Equipped with an effective predatory feeding mechanism enhanced by large and sharp teeth, pointed snout and elongate body, saurichthyiform fishes are considered common fish-eaters in the early Mesozoic aquatic ecosystems. Additionally, because of the similar body plan across species, saurichthyiforms are also regarded evolutionally conservative, with few morphological and ecological changes during their long history. However, their phylogenetic affinity remains unclear as to whether they are chondrostean, neopterygian or stem-actinopteran, and likewise the intrarelationships of the group have rarely been explored.Here we report a new saurichthyiform from the Middle Triassic of Guizhou, China, based on the well-preserved specimens including a 3-D braincase. The new taxon, Yelangichthys macrocephalus gen. et sp. nov., is unique among saurichthyiforms in having a peculiar neurocranium with a broad orbital tectum, paired posterior myodomes, a deep, transverse fossa in the posterodorsal part of the orbit, and a feeding mechanism structured for durophagy. Phylogenetic analysis places Yelangichthys gen. nov. at the most basal position in the Saurichthyiformes as the sister to Saurichthyidae, and a new family Yelangichthyidae is erected to include only Y. macrocephalus gen. et sp. nov. The monophyly of the Chondrostei comprising [Saurichthyiformes + Acipenseriformes] Birgeriiformes is supported, but not the monophyly of Saurichthys, the type genus of Saurichthyidae. With its outstanding osteological details, Yelangichthys gen. nov. greatly increases the neurocranial variations in saurichthyiforms, and its novel feeding structure suggests the consumption of hard-preys instead of fishes.Our findings highlight the detailed osteology of a saurichthyiform braincase and its feeding design. We suggest that saurichthyiforms are closely allied to the Acipenseriformes. Saurichthyiforms were very diverse in the cranial osteology and they might have undergone a

A New Saurichthyiform (Actinopterygii) with a Crushing Feeding Mechanism from the Middle Triassic of Guizhou (China)

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Wu, Feixiang; Chang, Mee-mann; Sun, Yuanlin; Xu, Guanghui

2013-01-01

Background Equipped with an effective predatory feeding mechanism enhanced by large and sharp teeth, pointed snout and elongate body, saurichthyiform fishes are considered common fish-eaters in the early Mesozoic aquatic ecosystems. Additionally, because of the similar body plan across species, saurichthyiforms are also regarded evolutionally conservative, with few morphological and ecological changes during their long history. However, their phylogenetic affinity remains unclear as to whether they are chondrostean, neopterygian or stem-actinopteran, and likewise the intrarelationships of the group have rarely been explored. Methodology/Principal Findings Here we report a new saurichthyiform from the Middle Triassic of Guizhou, China, based on the well-preserved specimens including a 3-D braincase. The new taxon, Yelangichthys macrocephalus gen. et sp. nov., is unique among saurichthyiforms in having a peculiar neurocranium with a broad orbital tectum, paired posterior myodomes, a deep, transverse fossa in the posterodorsal part of the orbit, and a feeding mechanism structured for durophagy. Phylogenetic analysis places Yelangichthys gen. nov. at the most basal position in the Saurichthyiformes as the sister to Saurichthyidae, and a new family Yelangichthyidae is erected to include only Y. macrocephalus gen. et sp. nov. The monophyly of the Chondrostei comprising [Saurichthyiformes + Acipenseriformes] Birgeriiformes is supported, but not the monophyly of Saurichthys, the type genus of Saurichthyidae. With its outstanding osteological details, Yelangichthys gen. nov. greatly increases the neurocranial variations in saurichthyiforms, and its novel feeding structure suggests the consumption of hard-preys instead of fishes. Conclusions/Significance Our findings highlight the detailed osteology of a saurichthyiform braincase and its feeding design. We suggest that saurichthyiforms are closely allied to the Acipenseriformes. Saurichthyiforms were very diverse in the

Population consequences of behaviour in the European bitterling (Rhodeus sericeus Cyprinidae)

Czech Academy of Sciences Publication Activity Database

Smith, C.; Reichard, Martin; Douglas, A.; Jurajda, Pavel

2006-01-01

Roč. 15, č. 2 (2006), s. 139-145 ISSN 0906-6691 Institutional research plan: CEZ:AV0Z60930519 Keywords : male-male competition * oviposition choice * population dynamics Subject RIV: EG - Zoology Impact factor: 1.479, year: 2006

Threatened Fishes of the World: Telestes Croaticus (Steindachner, 1866 (Cypriniformes: Cyprinidae

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Jelić Dušan

2017-03-01

Full Text Available Telestes croaticus is a freshwater fish endemic in Croatia. It is a stygophile species, living above ground but occasionally retreating into subterranean waters. This species is found in the southwest region of Croatia, in the Lika-Jadova and Ričica drainages, in cold and clear waters in lowland habitats with little current, and in springs and associated wetlands. It is protected under Croatian law and was listed by the IUCN Red List as Endangered (EN. It has an extremely limited distribution which makes it vulnerable to different kind of traits such as habitat destruction, water extraction, dam construction, agricultural water pollution and especially the introduction of non-indigenous fish species. Suggested conservation actions for this species are: bans on watercourse regulation, reduction of pollution and eradication of alien fish species. Due to its fast decline in the last 10 years, it is our proposition that T. croaticus should be upgraded to a Critically Endangered species under criterion A2ace A4ace.

Insights on the Reproduction and Embryonic Development of Garra rufa (Cyprinidae

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Mónica R S Gomes

2015-11-01

In a total of 28 postures, only 17 resulted in newly born fish. This was mostly due to fungal development around the eggs that caused the embryos to degenerate. There was a hatching success of 60%. The eggs showed no adhesive properties, being deposited on the bottom. The most prominent structures of the embryos were noticeable after: 3h - tail bud; 6h - optic primordium; 10h - heart beating; 15h - pectoral fins buds. They hatched between 24 to 48h and the larvae consumed the yolk sac in 48h.

A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii as a case study

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Zhang Gong

2007-03-01

Full Text Available Abstract Background Molecular systematics occupies one of the central stages in biology in the genomic era, ushered in by unprecedented progress in DNA technology. The inference of organismal phylogeny is now based on many independent genetic loci, a widely accepted approach to assemble the tree of life. Surprisingly, this approach is hindered by lack of appropriate nuclear gene markers for many taxonomic groups especially at high taxonomic level, partially due to the lack of tools for efficiently developing new phylogenetic makers. We report here a genome-comparison strategy to identifying nuclear gene markers for phylogenetic inference and apply it to the ray-finned fishes – the largest vertebrate clade in need of phylogenetic resolution. Results A total of 154 candidate molecular markers – relatively well conserved, putatively single-copy gene fragments with long, uninterrupted exons – were obtained by comparing whole genome sequences of two model organisms, Danio rerio and Takifugu rubripes. Experimental tests of 15 of these (randomly picked markers on 36 taxa (representing two-thirds of the ray-finned fish orders demonstrate the feasibility of amplifying by PCR and directly sequencing most of these candidates from whole genomic DNA in a vast diversity of fish species. Preliminary phylogenetic analyses of sequence data obtained for 14 taxa and 10 markers (total of 7,872 bp for each species are encouraging, suggesting that the markers obtained will make significant contributions to future fish phylogenetic studies. Conclusion We present a practical approach that systematically compares whole genome sequences to identify single-copy nuclear gene markers for inferring phylogeny. Our method is an improvement over traditional approaches (e.g., manually picking genes for testing because it uses genomic information and automates the process to identify large numbers of candidate makers. This approach is shown here to be successful for fishes

Using mariculture as a breeding site: reproduction of Hypleurochilus fissicornis (Actinopterygii: Blenniidae

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Bianca Possamai

2015-09-01

Full Text Available Mariculture in estuaries provides substrate for colonization by fouling organisms, thus attracting small cryptic fish species hitherto unknown in this environment. The blenny Hypleurochilus fissicornis is one of the species that is associated with this new system and is found in high abundance in bivalve farming. To understand the reproductive strategy that this species uses in this new environment, we collected specimens monthly in a mariculture on the southern coast of Paraná State (Brazil. After obtaining morphometric data, we removed gonads to determine sex and maturity stage. Gonads were weighed and analysed histologically. Oogenesis showed the same pattern as in other teleosts, but spermatogenesis showed a very complex dynamics. The spawning is multiple and synchronous between sexes, lasting eight months (May to December and peaking in winter. Hypleurochilus fissicornis was reproductively successful using the mariculture as a breeding site. The species has a variety of tactics to protect its offspring (e.g. batch spawning, long reproductive period, reduced L50, parental care and a reproductive peak in winter.

Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae associated with Venezuelan marine fishes (Elasmobranchii, Actinopterygii

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Lucy Bunkley-Williams

2006-12-01

Full Text Available The parasitic isopod fauna of fishes in the southern Caribbean is poorly known. In examinations of 12 639 specimens of 187 species of Venezuelan fishes, the authors found 10 species in three families of isopods (Gnathiids, Gnathia spp. from Diplectrum radiale *, Heteropriacanthus cruentatus *, Orthopristis ruber * and Trachinotus carolinus *; two aegids, Rocinela signata from Dasyatis guttata *, H. cruentatus *, Haemulon aurolineatum *, H. steindachneri * and O. ruber ; and Rocinela sp. from Epinephelus flavolimbatus *; five cymothoids: Anilocra haemuli from Haemulon boschmae *, H. flavolineatum * and H. steindachneri *; Anilocra cf haemuli from Heteropriacanthus cruentatus *; Haemulon bonariense*, O. ruber*, Cymothoa excisa in H. cruentatus *; Cymothoa oestrum in Chloroscombrus chrysurus, H. cruentatus* and Priacanthus arenatus ; Cymothoa sp. in O. ruber; Livoneca sp. from H. cruentatus *; and Nerocila fluviatilis from H. cruentatus * and P. arenatus *. The Rocinela sp. and A. cf haemuli in the southern Caribbean could represent new species. The abundance of A. cf haemuli appears to have drastically reduced from 1994 to 1999 in the Gulf of Cariaco. The Cymothoa sp. represents an undescribed species that is apparently host specific to O. ruber . It does not occur in the Gulf of Cariaco, but is relatively abundant on the Caribbean coast of Sucre State, Venezuela. The Livoneca sp. is an undescribed species host specific to Diapterus rhombeus, Cymothoa excisa and C. oestrum were thought to have distinct host preferences, but both infected the Heteropriacanthus cruentatus in the present study.Gnathia spp. are reported from Venezuelan waters for the first time. Twenty new host records* are noted. The fish-associated isopod fauna is much more extensive and important than has previously been suspected. Rev. Biol. Trop. 54 (Suppl. 3: 175-188. Epub 2007 Jan. 15.Se conoce muy poco acerca de la fauna de isópodos parásitos de peces en el Caribe Sur. Tras examinar 12 639 especímenes de 187 especies de peces de Venezuela, los autores encontraron 10 especies de isópodos distribuidos en tres familias. Los asteriscos indican nuevos registros (Gnátidos, Gnathia spp. en Diplectrum radiale*, Heteropriacanthus cruentatus*; Orthopristis ruber* y Trachinotus carolinus*; dos aégidos, Rocinela signata en Dasyatis guttata*, H. cruentatus*, Haemulon aurolineatum*, H. steindachneri * y O. ruber ; y Rocinela sp. en Epinephelus flavolimbatus*; cinco cimotoidos: Anilocra haemuli en Haemulon boschmae*, H. flavolineatum* y H.steindachneri*; Anilocra cf haemuli en Heteropriacanthus cruentatus*; Haemulon bonariense*, O. ruber*; Cymothoa excise in H. cruentatus*; Cymothoa oestrum en Chloroscombrus chrysurus, H. cruentatus* y Priacanthus arenatus; Cymothoa sp. en O. ruber; Livoneca sp. en H. cruentatus*; y Nerocila fluviatilis en H. cruentatus* y P. arenatus*. Las especies Rocinela sp.y A.cf haemuli en el Caribe sur podrían representar especies distintas. La abundancia de A. cf haemuli en el Golfo de Coriaco parece haberse reducido drásticamente entre 1994 a 1999. Cymothoa sp.es una especie no descrita que aparentemente parasita específicamente a O. ruber. No se le encuentra en el Golfo de Cariaco, pero es relativamente abundante en la costa Caribe del Estado de Sucre, Venezuela. Livoneca sp. (especie sin describir parasita específicamente a Diapterus rhombeus. Anteriormente se pensaba que Cymothoa excisa y C. oestrum tenían distintas preferencias de hospedero, pero ambas infectan a Heteropriacanthus cruentatus. Gnathia spp. Son además primer registro en aguas venezolanas. Se informan en total 20 nuevos registros. La fauna de isópodos asociados a peces es mucho más extensa e importante de lo que se sospechaba.

Astyanax intermedius Eigenmann, 1908 (Actinopterygii: Characiformes: Characidae): Distribution extension in eastern Brazil

OpenAIRE

Lezama, Antônio; Triques, Mauro; Queiroz, Federico

2011-01-01

Astyanax intermedius is known to occur at Paraíba do Sul River basin and coastal rivers of Rio de Janeiro state. A detailed study is presented in order to clearly assign the species to the Doce River basin, in Minas Gerais state.

Distribuição espacial e temporal de Cetengraulis edentulus (Cuvier (Actinopterygii, Engraulidae na Baía de Sepetiba, Rio de Janeiro, Brasil Spatial and temporal distribution of Cetengraulis edentulus (Cuvier (Actinopterygii-Engraulidae in the Sepetiba Bay, Rio de Janeiro, Brazil

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Márcio de Araújo Silva

2003-12-01

Full Text Available Anchovies are members of the Engraulidae family, characterized to present coastal pelagic habits, concentrating in large schoolings distributed among the continental shelf and semi-closed environment, like bays, where they are target of heavy fisheries. The present study aims to describe spatial and temporal distribution of Cetengraulis edentulous (Cuvier, 1828 in the Sepetiba bay (22º54'-23º04'S, 43º34'-44º10'W and to assess influences of environmental variables on fish occurrence. A monthly sampling programme was carried out between October 1998 and September 1999, to take both, fish and environmental information on temperature, salinity and depth. Three bay zones were established based on spatial gradient of salinity and depth. Adults C. edentulus were more abundant in the inner bay zone; seasonally, larger size groups (total length > 16 cm occurred in spring/summer. Significant negative correlations were found between fish abundance and salinity and depth. The close relationship of this species to innermost areas in bays, and the absence of juveniles in sandy beaches, suggest that young-of-the-year use mangrove areas as recruitment sites.

Polymorphic microsatellite markers for the endangered fish, the slender shiner Pseudopungtungia tenuicorpa and cross-species amplification across five related species.

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Kim, K S; Moon, S J; Han, S H; Kim, K Y; Bang, I C

2016-09-02

The slender shiner Pseudopungtungia tenuicorpa (Cypriniformes; Cyprinidae; Gobioninae) is an endangered freshwater fish species endemic to Korea. The current strategies for its conservation involve the study of population genetic characters and identification of management units. These strategies require suitable molecular markers to study genetic diversity and genetic structure. Here, we developed nine polymorphic microsatellite markers for P. tenuicorpa for the first time by applying an enrichment method from a size-selected genomic library. The developed microsatellite markers produced a total of 101 alleles (average 11.2). The observed and expected heterozygosities averaged 0.805 and 0.835, respectively. Among the nine identified markers, five markers showed successful amplification across five related Korean Gobioninae species. Thus, the microsatellite markers developed in this study will be useful to establish conservation strategies for both P. tenuicorpa and other related species.

Seasonal variation and community structure of fishes in the Mahananda River with special reference to conservation issues

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Shams Muhammad Galib

2016-04-01

Full Text Available This study was carried out in the Mahananda River from January to December 2013 with a view to determining the seasonal variation and community structure of fishes along with some conservation issues. Monthly sampling was carried out using traditional fishing gears and fishes were identified based on morphometric and meristic characters. A total of 4082 individuals of native fish species were captured, analyzed and classified into 62 species belonging to 46 genera, 25 families and 9 orders. Cypriniformes and Siluriformes were the dominant fish orders represented by 19 species each and the most abundant family was Cyprinidae (14 species. In addition to indigenous individuals, 9 individuals of 2 exotic fish species (Hypophthalmichthys molitrix and Pangasius hypophthalmus were also recorded. Among three sampling sites, S-1 was the most diversified in terms of not only the number of individual fish but also the number of species present represented by mean (±SE individuals of 151.50±25.22 and species of 25.58±3.91. Three distinct fish groups of fish families were revealed from the cluster analysis of similarity. To improve the situation, control of illegal fishing gears, establishment of sanctuaries and legal protection for threatened species are recommended.

Mitochondrial phylogeny of Chinese barred species of the cyprinid genus Acrossocheilus Oshima, 1919 (Teleostei: Cypriniformes) and its taxonomic implications.

Science.gov (United States)

Yuan, Le-Yang; Liu, Xiao-Xiang; Zhang, E

2015-12-21

Sequences from the mitochondrial control region of 14 putative species of Acrossocheilus (Cyprinidae) were examined to elucidate phylogenetic relationships within species of the barred group in that genus. Phylogenetic reconstructions were generated using three tree-building methods: maximum parsimony, maximum likelihood, and Bayesian inference. The resultant phylogenies were consistent with monophyly of the majority of the morphologically recognized species. However, mitochondrial DNA sequence evidence is incongruent with monophyly of A. fasciatus, as currently conceived. This species occurs only in the upper Qiantang-Jiang basin in Zhejiang and Anhui provinces, and coastal rivers in the Zhejiang Province. The species formerly recognized as A. paradoxus from Zhejiang Province is A. fasciatus. The specimens previously reported as A. fasciatus from river basins in Fujian Province are misidentified A. wuyiensis. The barred group of Acrossocheilus is shown to be polyphyletic. Acrossocheilus is restricted to the barred species here placed in "Clade II," containing A. paradoxus and relatives. Separate generic status is recommended for A. monticola and for A. longipinnis and their closest relatives, although more information on phylogenetic relationships based on multiple genes is required to develop robust phylogenetic hypotheses and diagnoses. Masticbarbus Tang, 1942 is available for A. longipinnis and three allied species (A. iridescens, A. microstomus and A. lamus).

Aphanius arakensis, a new species of tooth-carp (Actinopterygii, Cyprinodontidae) from the endorheic Namak Lake basin in Iran.

Science.gov (United States)

Teimori, Azad; Esmaeili, Hamid Reza; Gholami, Zeinab; Zarei, Neda; Reichenbacher, Bettina

2012-01-01

A new species of tooth-carp, Aphanius arakensissp. n., is described from the Namak Lake basin in Iran. The new species is distinguished by the congeners distributed in Iran by the following combination of characters: 10-12 anal fin rays, 28-32 lateral line scales, 10-13 caudal peduncle scales, 8-10 gill rakers, 12-19, commonly 15-16, clearly defined flank bars in males, a more prominent pigmentation along the flank added by relatively big blotches in the middle and posterior flank segments in females, a short but high antirostrum of the otolith that has a wide excisura, and a ventral rim with some small, drop-like processes, and 19 molecular apomorphies (17 transitions, two transversions) in the cytochrome b gene. It was suggested based on the phylogenetic analysis that the new species is sister to Aphanius sophiae from the Kor River and that Aphanius farsicus from the Maharlu Lake basin is sister to Aphanius arakensis plus Aphanius sophiae. A noticeable feature of the Aphanius diversity in Iran is the conservatism of the external morphology as well as morphometric and meristic characters, while distinctive differences are present in genetic characters, otolith morphology, and male color pattern. Transformation of the latter was probably driven by sexual selection.

Comparative phylogenetic analysis of male alternative reproductive tactics in ray-finned fishes.

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Mank, Judith E; Avise, John C

2006-06-01

Using comparative phylogenetic analysis, we analyzed the evolution of male alternative reproductive tactics (MARTs) in ray-finned fishes (Actinopterygii). Numerous independent origins for each type of MART (involving sneaker males, female mimics, pirates, and satellite males) indicate that these behaviors have been highly labile across actinopterygiian evolution, consistent with a previous notion that convergent selection in fishes can readily mold the underlying suites of reproductive hormones into similar behaviors. The evolutionary appearance of MARTs was significantly correlated with the presence of sexually selected traits in bourgeois males (P = 0.001) but not with the presence of male parental care. This suggests that MARTs often arise from selection on some males to circumvent bourgeois male investment in mate monopolization, rather than to avoid male brood care per se. We found parsimony evidence for an evolutionary progression of MARTs wherein sneaking is usually the evolutionary precursor to the presumably more complex MARTs of female mimicry and cooperative satellite behavior. Nest piracy appears not to be part of this evolutionary progression, possibly because its late onset in the life cycle of most ray-finned fishes reduces the effects of selection on this reproductive tactic.

Genomic and transcriptomic approaches to study immunology in cyprinids: What is next?

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Petit, Jules; David, Lior; Dirks, Ron; Wiegertjes, Geert F

2017-10-01

Accelerated by the introduction of Next-Generation Sequencing (NGS), a number of genomes of cyprinid fish species have been drafted, leading to a highly valuable collective resource of comparative genome information on cyprinids (Cyprinidae). In addition, NGS-based transcriptome analyses of different developmental stages, organs, or cell types, increasingly contribute to the understanding of complex physiological processes, including immune responses. Cyprinids are a highly interesting family because they comprise one of the most-diversified families of teleosts and because of their variation in ploidy level, with diploid, triploid, tetraploid, hexaploid and sometimes even octoploid species. The wealth of data obtained from NGS technologies provides both challenges and opportunities for immunological research, which will be discussed here. Correct interpretation of ploidy effects on immune responses requires knowledge of the degree of functional divergence between duplicated genes, which can differ even between closely-related cyprinid fish species. We summarize NGS-based progress in analysing immune responses and discuss the importance of respecting the presence of (multiple) duplicated gene sequences when performing transcriptome analyses for detailed understanding of complex physiological processes. Progressively, advances in NGS technology are providing workable methods to further elucidate the implications of gene duplication events and functional divergence of duplicates genes and proteins involved in immune responses in cyprinids. We conclude with discussing how future applications of NGS technologies and analysis methods could enhance immunological research and understanding. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids.

Science.gov (United States)

Zardoya, R; Doadrio, I

1999-08-01

The phylogenetic relationships of 106 European cyprinid taxa were determined based on the complete nucleotide sequence (1140 bp) of the mitochondrial cytochrome b gene. The molecular phylogeny was used (1) to revise the current systematics of European cyprinids, (2) to establish the phylogenetic utility of traditional morphological characters that are widely used in Cyprinidae systematics, and (3) to discuss alternative hypotheses on the biogeography of the family in Europe. The age of the major lineages within European cyprinids was tentatively estimated with a molecular clock and showed full agreement with the fossil record of the group. Moreover, the results provided unambiguous evidence for a close phylogenetic affinity of some Caucasian and Greek endemic cyprinid taxa (e.g., B. capito and B. brachycephalus and Leuciscus keadicus, Barbus graecus, and B. albanicus, respectively) to Iberian and North African, but not Central European, cyprinids. The existence of such unexpected phylogenetic relationships refutes the classical hypothesis on the biogeography of European cyprinids, which assumes a dispersal of the cyprinid fauna from central Europe to southern Europe and northern Africa during the Miocene (and, hence, predicts a close phylogenetic relationship of all Caucasian, Greek, Iberian, and North African cyprinids to central European taxa). Instead, the existence of a Mediterranean realm independent of the central European route seems plausible based on the molecular evidence. It is likely that the new biogeographical scenario proposed here might apply to other primary freshwater European animals with low dispersal abilities, including fish, amphibians, and invertebrates.

Aphanius arakensis, a new species of tooth-carp (Actinopterygii, Cyprinodontidae from the endorheic Namak Lake basin in Iran

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Azad Teimori

2012-08-01

Full Text Available A new species of tooth-carp, Aphanius arakensis sp. n., is described from the Namak Lake basin in Iran. The new species is distinguished by the congeners distributed in Iran by the following combination of characters: 10–12 anal fin rays, 28–32 lateral line scales, 10–13 caudal peduncle scales, 8–10 gill rakers, 12–19, commonly 15–16, clearly defined flank bars in males, a more prominent pigmentation along the flank added by relatively big blotches in the middle and posterior flank segments in females, a short but high antirostrum of the otolith that has a wide excisura, and a ventral rim with some small, drop-like processes, and 19 molecular apomorphies (17 transitions, two transversions in the cytochrome b gene. It was suggested based on the phylogenetic analysis that the new species is sister to A. sophiae from the Kor River and that A. farsicus from the Maharlu Lake basin is sister to A. arakensis plus A. sophiae. A noticeable feature of the Aphanius diversity in Iran is the conservatism of the external morphology as well as morphometric and meristic characters, while distinctive differences are present in genetic characters, otolith morphology, and male color pattern. Transformation of the latter was probably driven by sexual selection.

Fauna parasitária de peixes oriundos de “pesque-pague” do município de Guariba, São Paulo, Brasil - DOI: 10.4025/actascibiolsci.v28i3.253 Parasitic fauna of cultivated fishes in fee fishing farm of Guariba, São Paulo State, Brazil - DOI: 10.4025/actascibiolsci.v28i3.253

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Julieta Rodini Engracia de Moraes

2007-11-01

Full Text Available Este trabalho descreve a ocorrência e a sazonalidade de parasitos em peixes de “pesque-pague” do município de Guariba, Estado de São Paulo, Brasil (21º15`22``S, 48º18`58``W e 595 m de altitude, durante o período de agosto de 2001 a julho de 2002. A presença de parasitos foi pesquisada em pacu Piaractus mesopotamicus (Characidae, carpa comum Cyprinus carpio (Cyprinidae, tilápia-do-Nilo Oreochromis niloticus (Cichlidae, híbrido tambacu (macho de P. mesopotamicus x fêmea de tambaqui-Colossoma macropomum e piraputanga Brycon hillari (Characidae. Os resultados demonstram que dos 100 peixes examinados, 15% estavam parasitados por pelo menos um dos seguintes parasitos: Trichodina sp.; helmintos monogenóides; copepoditos de Lernaea cyprinacea; L. cyprinacea adulta ou Dolops carvalhoi. Por ordem decrescente, o grau de suscetibilidade dos hospedeiros foi C. carpio, P. mesopotamicus, B. hillari, híbrido tambacu e O. niloticus. Por ordem decrescente, os parasitos encontrados foram helmintos monogenóides, Dolops carvalhoi, Trichodina sp., Lernaea cyprinacea adultas e suas formas jovens.This study describes the occurrence and the seasonality of parasites of cultivated fish from a fee fishing farm located in Guariba, São Paulo State, Brazil (21º15`22`` S, 48º18`58`` W and 595 m of altitude, from August, 2001 to July, 2002. The presence of parasites was researched in pacu Piaractus mesopotamicus (Characidae, common carp Cyprinus carpio (Cyprinidae, nile-tilapia Oreochromis niloticus (Cichlidae, tambacu hybrid (male of P. mesopotamicus x female of tambaqui-Colossoma macropomum and piraputanga Brycon hillari (Characidae. Results demonstrate that out of 100 fish examined, 15% were sponged for at least one of the following parasites: Trichodina sp.; monogenean helminths; copepodits of Lernaea cyprinacea; adults of L. cyprinacea; or Dolops carvalhoi. In decreasing order, the susceptibility degree of the hosts was C. carpio, P. mesopotamicus, B

FIRST RECORD OF Alburnusatropatenae (BERG,1925) (CYPRINIDAE) IN NAMAK BASIN, CENTRAL IRAN

OpenAIRE

Khataminejad, Somaye; Mousavi-Sabet, Hamed; Sattari, Masud; Vatandoust, Saber

2013-01-01

AlburnusatropatenaeBerg, 1925 is reported for the first time from the River Ghareh-Chay in the Namak basin, central Iran. Previously, this species has onlybeen reported from the LakeOrumiyeh basin, in northwest Iran. In this report twenty-nine specimens were caught on 8 August 2012. Morphometric and meristic characteristics of the specimens were similar to those reported elsewhere for the species.

Molecular phylogeography and evolutionary history of Poropuntius huangchuchieni (Cyprinidae in Southwest China.

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Xiaoyun Wu

Full Text Available The evolution of the Yunnan Plateau's drainages network during the Pleistocene was dominated by the intense uplifts of the Qinghai-Tibetan Plateau. In the present study, we investigated the association between the evolutionary histories of three main drainage systems and the geographic patterns of genetic differentiation of Poropuntius huangchuchieni.We sequenced the complete sequences of mitochondrial control region for 304 specimens and the sequences of Cytochrome b gene for 15 specimens of the species P. huangchuchieni and 5 specimens of Poropuntius opisthoptera. Phylogenetic analysis identified five major lineages, of which lineages MK-A and MK-B constrained to the Mekong River System, lineages RL and LX to the Red River System, and lineage SW to the Salween River System. The genetic distance and network analysis detected significant divergences among these lineages. Mismatch distribution analysis implied that the population of P. huangchuchieni underwent demographic stability and the lineage MK-B, sublineages MK-A1 and LX-1 underwent a recent population expansion. The divergence of the 5 major lineages was dated back to 0.73-1.57 MYA.Our results suggest that P. opisthoptera was a paraphyletic group of P. huangchuchieni. The phylogenetic pattern of P. huangchuchieni was mostly associated with the drainage's structures and the geomorphological history of the Southwest Yunnan Plateau. Also the differentiation of the major lineages among the three drainages systems coincides with the Kunlun-Yellow River Movement (1.10-0.60 MYA. The genetic differentiation within river basins and recent demographical expansions that occurred in some lineages and sublineages are consistent with the palaeoclimatic oscillations during the Pleistocene. Additionally, our results also suggest that the populations of P. huangchuchieni had keep long term large effective population sizes and demographic stability in the recent evolutionary history, which may be responsible for the high genetic diversity and incomplete lineages sorting of Poropuntius huangchuchieni.

The influence of low-level radiation on nucleolus activity of cyprinidae embryos

International Nuclear Information System (INIS)

Arkhipchuk, V.V.

1990-01-01

The number and sizes of nucleoli in embryos of Cyprinus carpio and Carassius auratus gibelio exposed to low-level radiation at a dose-rate of 10 μ Gy/h and down were larger than those on non-irradiated controls

Estimation of the ideal dosage and feeding frequency for Garra rufa (Cyprinidae

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Mafalda M. R. S. Catarino

2015-11-01

Full Text Available Garra rufa are widely used in skin treatments at beauty and wellness institutes. This freshwater species is native from Eurasia and has a large distribution area, including river basins in Turkey and Iran. It has a high commercial value and arouse interest among fish farmers. Even so, G. rufa methods of production are still unknown. In fact, aspects that sustain a rapid and healthy growth of these fish need to be investigated, like an adequate daily dose and feeding frequency. This work aimed to establish: 1 the optimal feed dose per day, correspondent to the amount necessary for obtaining satiation, with a commercial granulated food; and 2 the optimal frequency of feeding for intensive production of G. rufa in Aquaculture. A total of 60 fishes underwent a 3 weeks acclimation period in laboratory, distributed by 6 aquaria, containing 10 fishes with similar body weight and length. The animals were initially fed with a dose correspondent to 10% of their body weight. This dose was gradually increased until complete satiation of the fishes. An optimal dose of 0.04 g fish-1 day-1 was found. Afterwards, the same fishes went through a 1 month experimental trial to evaluate the ideal feeding frequency. Fish growth was compared between feeding 0.2 g twice per day and 0.1333 g three times per day. Variations in size (total and fork length, plus body weight were evaluated at the end of the trial. One-Way ANOVA procedures revealed that the variations in weight and in fork length were similar between treatments, but the variation in total length was significantly higher with 3 daily feeding moments (p<0.05. In conclusion, the present results showed that the optimal dose that ensures satiation for G. rufa is 0.04 g fish-1 day-1 and that 3 daily feeding moments promotes higher growth rates.

Intraspecific ecomorphological variations in Poecilia reticulata (Actinopterygii, Cyprinodontiformes: comparing populations of distinct environments

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Fábio T. Mise

2015-06-01

Full Text Available ABSTRACT Morphological variations, according to the principles of ecomorphology, can be related to different aspects of the organism way of life, such as occupation of habitats and feeding behavior. The present study sought to examine the intraspecific variation in two populations of Poecilia reticulata Peters, 1859, that occur in two types of environments, a lotic (Maringá Stream and a lentic (Jaboti Lake. Due to a marked sexual dimorphism, males and females were analyzed separately. Thus, the proposed hypotheses were that the populations that occur in distinct environments present morphological differences. The morphological variables were obtained using morphometric measurements and the ecomorphological indexes. The data were summarized in a Principal Component Analysis (PCA. A Multivariate Analysis of Variance (Manova was made to verify significant differences in morphology between the populations. Males and females showed similar ecomorphological patterns according to the environment they occur. In general the population from Maringá Stream had fins with major areas, and the Jaboti Lake population eyes located more dorsally. Additionally, others morphological differences such as wider mouth of the males from Maringá Stream, wider heads on Jaboti Lake females and more protractible mouths on males from Jaboti Lake suggest a set of environmental variables that can possibly influence the ecomorphological patterns of the populations, as the water current, availability of food resources and predation. In summary, the initial hypotheses could be confirmed, evidencing the occurrence of distinct ecomorphotypes in the same species according to the environment type.

Fine structure and development of the collar enamel in gars, Lepisosteus oculatus, Actinopterygii

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Sasagawa, Ichiro; Ishiyama, Mikio; Yokosuka, Hiroyuki; Mikami, Masato

2008-06-01

The fine structure of collar enamel and the cells constituting the enamel organ during amelogenesis in Lepisosteus oculatus was observed by light, scanning electron and transmission electron microscopy. In the enamel, slender crystals were arranged perpendicular to the surface and the stripes that were parallel to the surface were observed, suggesting that the enamel in Lepisosteus shares common morphological features with that in sarcopterygian fish and amphibians. Ameloblasts containing developed Golgi apparatus, rough endoplasmic reticulum (rER) and secretory granules were found in the secretory stage. In the maturation stage, a ruffled border was not seen at the distal end of the ameloblasts, while many mitochondria and lysosome-like granules were obvious in the distal cytoplasm. The enamel organ consisted of the outer dental epithelial cells, stratum reticulum cells and ameloblasts, but there was no stratum intermedium. It is likely that the ameloblasts have less absorptive function in comparison with the inner dental epithelial cells facing cap enameloid.

Miliç Irmağı (Terme, Samsun Balık Faunası.

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Selma Uğurlu

2015-12-01

Full Text Available Miliç Irmağı’nda yaşayan balık türlerini ortaya çıkarmak amacıyla yapılan bu araştırma, Nisan 2004–Temmuz 2005 tarihleri arasında gerçekleştirilmiştir. Balık örneklerini toplamak amacıyla ırmak boyunca, ırmağın ekolojik karakterlerini temsil eden 7 istasyon belirlenmiştir. Çalışma süresince toplam 286 balık örneği; elektro şok aleti, balık kepçeleri, balık ağları, serpme ve oltalar aracılığıyla yakalanmıştır. Bu çalışmada 5 familyaya ait (Cyprinidae, Mugilidae, Syngnathidae, Blenniidae, Gobiidae 16 tür teşhis edilmiştir

Phylogenetic analysis of molecular and morphological data highlights uncertainty in the relationships of fossil and living species of Elopomorpha (Actinopterygii: Teleostei).

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Dornburg, Alex; Friedman, Matt; Near, Thomas J

2015-08-01

Elopomorpha is one of the three main clades of living teleost fishes and includes a range of disparate lineages including eels, tarpons, bonefishes, and halosaurs. Elopomorphs were among the first groups of fishes investigated using Hennigian phylogenetic methods and continue to be the object of intense phylogenetic scrutiny due to their economic significance, diversity, and crucial evolutionary status as the sister group of all other teleosts. While portions of the phylogenetic backbone for Elopomorpha are consistent between studies, the relationships among Albula, Pterothrissus, Notacanthiformes, and Anguilliformes remain contentious and difficult to evaluate. This lack of phylogenetic resolution is problematic as fossil lineages are often described and placed taxonomically based on an assumed sister group relationship between Albula and Pterothrissus. In addition, phylogenetic studies using morphological data that sample elopomorph fossil lineages often do not include notacanthiform or anguilliform lineages, potentially introducing a bias toward interpreting fossils as members of the common stem of Pterothrissus and Albula. Here we provide a phylogenetic analysis of DNA sequences sampled from multiple nuclear genes that include representative taxa from Albula, Pterothrissus, Notacanthiformes and Anguilliformes. We integrate our molecular dataset with a morphological character matrix that spans both living and fossil elopomorph lineages. Our results reveal substantial uncertainty in the placement of Pterothrissus as well as all sampled fossil lineages, questioning the stability of the taxonomy of fossil Elopomorpha. However, despite topological uncertainty, our integration of fossil lineages into a Bayesian time calibrated framework provides divergence time estimates for the clade that are consistent with previously published age estimates based on the elopomorph fossil record and molecular estimates resulting from traditional node-dating methods. Copyright �

[Genetic structure of Hemibarbus labeo and Hemibarbus medius in South China based on mtDNA COI and ND5 genes].

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Lan, Zhao Jun; Lin, Long Feng; Zhao, Jun

2017-04-18

Both Hemibarbus labeo and H. medius (Cypriniformes: Cyprinidae: Gobioninae) are primary freshwater fishes and are widely distributed. As such, they provide an ideal model for phylogeographical studies. However, the similarity in morphological characters between these two species made the description of their distributions and the validation of species quite challenging. Here we employed variations in the DNA sequences of mitochondrial COI and ND5 genes (2151 bp) to solve this challenge and to study the population genetics structure of these two species. Among the 130 specimens belonging to 8 populations of H. labeo and 9 populations of H. medius from 17 drainage systems in southern China,196 variable sites (9.1% in the full sequences) falling into 50 haplotypes were identified. The haplotype diversity (h) and the nucleotide diversity (π) were 0.964 and 0.019, respectively, indicating a high level of genetic diversity and an evolutionary potential in both species. The result of neighbor-joining tree based on composite nucleotide sequences of the mtDNA COI and ND5 genes showed that the H. labeo and H. medius fell into two major clades (clade1and clade2): clade1was composed of some specimens of Oujiang River, all the specimens of Hanjiang River and Jiulongjiang River, whereas all remaining populations fell in clade2. The genetic distance between clade I and clade II was 0.036, while that between H. labeo and H. medius was 0.027. The haplotype network analyses indicated that the populations of Hanjiang River and Jiulongjiang River had relatively high genetic variation with the rest rivers. The po-pulations of Hainan Island migrated northward to Moyangjaing River. Haplotypes of the rivers of Hainan Island and Moyangjang River had relatively higher genetic variation with the Yangtze River than Pearl River. The populations of Xiangjiang River had no genetic variation with the populations of Guijiang River and Liujiang River. Analysis of molecular variance (AMOVA

HEMATOLOGICAL BLOOD PARAMETERS OF YOUNG-OF-THE-YEAR CARPS (CYPRINIDAE REARED USING FISH RANCHING TECHNOLOGY IN THE SOUTHERN UKRAINE

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Yu. Volichenko

2015-12-01

Full Text Available Purpose. To investigate the hematological characteristics of blood young-of-the-year carps reared using fish ranching technology in the southern Ukraine and to establish certain correlations between the main fish technical features of the studied groups of the young-of-the-year fish. Methodology. The studies were based on field and experimental methods adopted for fisheries, biochemical and statistical studies. Findings. The paper contains the data on mean fish weight, hematological and biochemical parameters of serum of young-of-the-year carps reared using fish ranching technology. Based on a comparative analysis of the obtained data, we detected significant peculiarities and qualitative difference in the absence of foam cells and basophils, which distinguish carp from the group of herbivorous fish, established significant correlations between mean fish weight and hematologic indices of blood. Marked by fish-breeding relationships with signs like weight and some parameters of blood components in all studied fish: hemoglobin in the range from 0.7858 to 0.9943, number of erythrocytes from 0.7843 to 0.9942, lymphocytes from 0.7848 to 0.9949, сholеsterol from 0.7640 to 0.9616 and triglycerides of 0.7499 in silver carp (Hypophthalmichthys molitrix and 0.9616 in common carp (Cyprinus carpio carpio. To show these relationships graphically, we used regression analysis and the obtained regression equations can give an accurate assessment of the quality of fish seeds through hematological blood parameters and mean weight. Originality. The analysis of hematological parameters of blood of young-of-the-year carps: common carp (Cyprinus carpio carpio, silver carp (Hypophthalmichthys molitrix, bighead carp (Hypophthalmichthys nobilis, grass carp (Ctenopharyngodon idella reared using fish ranching technology in the south of Ukraine was performed for the first time. Practical value. The obtained data allow scientifically recommending them as a component of

Fish composition and assemblage in the anthropogenic-modified tidally-restricted Doñana (Spain) marshlands

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Moreno-Valcárcel, Raquel; Oliva-Paterna, Francisco J.; Arribas, Carmen; Fernández-Delgado, Carlos

2013-03-01

The Guadalquivir estuary is the largest estuarine area on the southern Atlantic coast of Europe; its anthropogenic tidally-restricted marshes are partly within the boundary of the Doñana National Park, southern Spain. Our two-year study describes the spatial and temporal patterns of the fish assemblages in the Doñana marshlands in terms of species richness, abundance and biomass. The main families were Mugilidae and Cyprinidae, which accounted for 40.9% of the total species richness. Unlike the fish assemblages found in other European estuaries, Doñana was dominated in both biomass and abundance by freshwater species, mainly invasive exotic species. The spatial analysis of the assemblage showed four significant fish groups corresponding to different habitats established a priori and related to the salinity gradient. Assemblages did not show a seasonal pattern and the temporal fish groups observed were mainly related to the hydrological cycle and the extreme drought that occurred during the study period.

Biological studies of Cyprinid Fish, Barbus luteus (Heckel) fromAl-Hammar Marsh in Southern Iraq

International Nuclear Information System (INIS)

Nasir, N.A.

2006-01-01

This study was carried out over a period of one year to investigate someaspects of the biology of Barbus luteus (Pisces: Cyprinidae) in the Al-Hammarmarsh area of Iraq. The fish are most abundant between February and June,followed by a steady decrease towards the end of the year. A mean monthlymortality rate of 35% per month was recorded. Total length and weight of 1002fish collected ranged between 120-320mm (mean: 174mm) and 21-275 gm (Mean:79gm) respectively. Numerically, the samples were dominated by females. Theyaccounted for about 52.7% of the total catch. The population of B. luteus wasdominated by 2+ year-olds for both sexes and they matured at this age. Themathematical relationship between the weight and length of the fish wasdetermined. The values of the exponent (b) showed that females are generallyheavier at a given length than males. The food taken by the fish was studiedand it was found that fish is principally a surface phytoplankton feeder.(author)

Keragaman ikan di Danau Cala, Kabupaten Musi Banyuasin Sumatera Selatan

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Jifi Abu Ammar

2014-12-01

Full Text Available The aim of his studi was to evaluate the fish fauna in Danau Cala in dry season, transition season, and the tide season. The survey was conducted 3 times on July 2013, October 2013 and January 2014 as representative of dry, transition and tide seasons. The fish sampling was conducted by gillnets and fish traps. A total of 35 fish species were recorded during the study; 23 species in dry season, it was dominated by tembakang fish (Helostoma temminckii from family Helosmatidae, Sepat siam fish(Trichogaster pectoralis from Belontiidae family, and snakehead fish (Channa striata of Channidae family. A total of 16 species were recorded on transitional seasons where baung fish (Hemibagrus nemurus of the family Bagridae, and seluang fish (Rasbora sp of the family Cyprinidae were predominant. In addition, 15 fish species were recorded on tide season which was dominated by baung fish (Hemibagrus nemurus and tendon fish (Mystus sabanus of family Bagridae.

CEPF Western Ghats Special Series: Checklist of the fishes of the Achankovil forests, Kerala, India with notes on the range extension of an endemic cyprinid Puntius chalakkudiensis

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F. Baby

2011-07-01

Full Text Available We report the results of an ichthyofaunal inventory carried out in the Achankovil Reserve Forest in the southern Western Ghats as part of a Critical Ecosystem Partnership Fund Project on lesser known freshwater fishes of Kerala . Forty-six species of freshwater fish, belonging to 17 families and 31 genera were collected from 11 sites inside the Achankovil Reserve Forest. Family Cyprinidae dominated with 21 species, followed by Bagridae, Balitoridae and Channidae (three species each. Out of the 46 species, 14 were endemic to the Western Ghats, three were endemic to Kerala region and one was exotic to the country. In this paper, we also report the range extension of an endemic cyprinid, Puntius chalakkudiensis to the Achankovil River and the Achankovil Reserve Forest. The fish diversity of this region is higher than many protected areas within southern Western Ghats, and stresses the need for immediate protection and monitoring programs.

Phylogenetic Relationships of Pseudorasbora, Pseudopungtungia, and Pungtungia (Teleostei; Cypriniformes; Gobioninae Inferred from Multiple Nuclear Gene Sequences

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Keun-Yong Kim

2013-01-01

Full Text Available Gobionine species belonging to the genera Pseudorasbora, Pseudopungtungia, and Pungtungia (Teleostei; Cypriniformes; Cyprinidae have been heavily studied because of problems on taxonomy, threats of extinction, invasion, and human health. Nucleotide sequences of three nuclear genes, that is, recombination activating protein gene 1 (rag1, recombination activating gene 2 (rag2, and early growth response 1 gene (egr1, from Pseudorasbora, Pseudopungtungia, and Pungtungia species residing in China, Japan, and Korea, were analyzed to elucidate their intergeneric and interspecific phylogenetic relationships. In the phylogenetic tree inferred from their multiple gene sequences, Pseudorasbora, Pseudopungtungia and Pungtungia species ramified into three phylogenetically distinct clades; the “tenuicorpa” clade composed of Pseudopungtungia tenuicorpa, the “parva” clade composed of all Pseudorasbora species/subspecies, and the “herzi” clade composed of Pseudopungtungia nigra, and Pungtungia herzi. The genus Pseudorasbora was recovered as monophyletic, while the genus Pseudopungtungia was recovered as polyphyletic. Our phylogenetic result implies the unstable taxonomic status of the genus Pseudopungtungia.

Histological-morphometric structure of the liver of some cyprinids (Cyprinidae Rafinesque, 1810 from the Zaporizhzhia reservoir

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T. Sharamok

2017-12-01

Full Text Available Purpose. To investigate the state of the liver of wild carp (Cyprinus carpio Linnaeus, 1758 and bream (Abramis brama Linnaeus, 1758 from sites of the Zaporizhzhia reservoir with different human pressures based on histological and cytometric parameters Methodology.The study was carried out in two zones of the Zaporizhzhia reservoir with different degrees and types of human impact - the lower part, located in the agrarian zone (conditionally "environmentally clean" site, and in the Samara Bay with high content of heavy metals in water. The objects of the study were age-4 bream and wild carp. The fish livers for histological studies were obtained from freshly caught fish (in the spring-summer period by anatomical dissection. Fragments of organs of 0.3 – 0.5 cm were taken for preservation. For the preparation of histological preparations, the liver tissue was stained with hematoxylin and eosin. The pictures of histological preparations were made with the aid of a digital camera connected to the microscope. Histologic sections were investigated with 40X magnification using a microscope with the Sciencelab T500 5.17 M digital camera. Findings. Human impact on the hydroelectric system causes signs of hepatocyte hypertrophy and a number of histopathologies in cyprinids in the Samara Bay. The cytometric analysis of the liver showed that the area of hepatocytes in the bay was larger in comparison with the the individuals of similar age from the lower part of the reservoir by 20 and 10% for the wild carp and bream, respectively. In this case, a 14% increase in the small diameter of cells was observed the in hepatocytes of carp, and a 10% increase in large diameter and a 19% increase in nucleus area was observed in bream. The results of the histological invesatigation of the morphological structure of the liver of cyprinids inhabiting the Samara Bay have revealed a number of pathological changes. Fatty liver dystrophy was observed in 37% of bream and 12

DNA barcoding commercially important fish species of Turkey.

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Keskın, Emre; Atar, Hasan H

2013-09-01

DNA barcoding was used in the identification of 89 commercially important freshwater and marine fish species found in Turkish ichthyofauna. A total of 1765 DNA barcodes using a 654-bp-long fragment of the mitochondrial cytochrome c oxidase subunit I gene were generated for 89 commercially important freshwater and marine fish species found in Turkish ichthyofauna. These species belong to 70 genera, 40 families and 19 orders from class Actinopterygii, and all were associated with a distinct DNA barcode. Nine and 12 of the COI barcode clusters represent the first species records submitted to the BOLD and GenBank databases, respectively. All COI barcodes (except sequences of first species records) were matched with reference sequences of expected species, according to morphological identification. Average nucleotide frequencies of the data set were calculated as T = 29.7%, C = 28.2%, A = 23.6% and G = 18.6%. Average pairwise genetic distance among individuals were estimated as 0.32%, 9.62%, 17,90% and 22.40% for conspecific, congeneric, confamilial and within order, respectively. Kimura 2-parameter genetic distance values were found to increase with taxonomic level. For most of the species analysed in our data set, there is a barcoding gap, and an overlap in the barcoding gap exists for only two genera. Neighbour-joining trees were drawn based on DNA barcodes and all the specimens clustered in agreement with their taxonomic classification at species level. Results of this study supported DNA barcoding as an efficient molecular tool for a better monitoring, conservation and management of fisheries. © 2013 John Wiley & Sons Ltd.

An N-targeting real-time PCR strategy for the accurate detection of spring viremia of carp virus.

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Shao, Ling; Xiao, Yu; He, Zhengkan; Gao, Longying

2016-03-01

Spring viremia of carp virus (SVCV) is a highly pathogenic agent of several economically important Cyprinidae fish species. Currently, there are no effective vaccines or drugs for this virus, and prevention of the disease mostly relies on prompt diagnosis. Previously, nested RT-PCR and RT-qPCR detection methods based on the glycoprotein gene G have been developed. However, the high genetic diversity of the G gene seriously limits the reliability of those methods. Compared with the G gene, phylogenetic analyses indicate that the nucleoprotein gene N is more conserved. Furthermore, studies in other members of the Rhabdoviridae family reveals that their gene transcription level follows the order N>P>M>G>L, indicating that an N gene based RT-PCR should have higher sensitivity. Therefore, two pairs of primers and two corresponding probes targeting the conserved regions of the N gene were designed. RT-qPCR assays demonstrated all primers and probes could detect phylogenetically distant isolates specifically and efficiently. Moreover, in artificially infected fish, the detected copy numbers of the N gene were much higher than those of the G gene in all tissues, and both the N and G gene copy numbers were highest in the kidney and spleen. Testing in 1100 farm-raised fish also showed that the N-targeting strategy was more reliable than the G-targeting methods. The method developed in this study provides a reliable tool for the rapid diagnosis of SVCV. Copyright © 2015 Elsevier B.V. All rights reserved.

Molecular phylogeny of north mediterranean freshwater barbs (genus Barbus: cyprinidae) inferred from cytochrome b sequences: biogeographic and systematic implications.

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Tsigenopoulos, C S; Berrebi, P

2000-02-01

We investigated phylogenetic relationships among north Mediterranean species of the genus Barbus using sequences of the cytochrome b gene. Our results indicate that the species belong to two major clades that are consistent with those previously defined from morphological features. The first clade includes species ranging from France to the Black Sea. In this clade, there is a well-supported monophyletic group of large-sized fluvio-lacustrine barbs; however, the monophyly of the small-sized rheophilic species is not clear. The second clade comprises species found in Spain, Greece, and Asia Minor and probably represents the oldest group present in the north Mediterranean rivers. In general, there is good concordance between geography and phylogenetic relationships. These results are compared to those from previous morphological- and allozyme-based studies and demonstrate widespread discordance and polyphyly in the traditional taxonomy of the genus Barbus. This study is one of the first reporting the phylogenetic and biogeographic relationships of a genus that is widely distributed in European rivers and contains species that are a major component of the European ichthyofauna. Copyright 2000 Academic Press.

The parasite community of gobiid fishes (Actinopterygii: Gobiidae) from the Lower Volga River region

Czech Academy of Sciences Publication Activity Database

Kvach, Yuriy; Boldyrev, V.; Lohner, R.; Stepien, C. A.

2015-01-01

Roč. 70, č. 7 (2015), s. 948-957 ISSN 0006-3088 Institutional support: RVO:68081766 Keywords : Gobiidae * parasites * Volga River * Caspian Sea * introduced species Subject RIV: EG - Zoology Impact factor: 0.719, year: 2015

A NEW SAURICHTHYS (ACTINOPTERYGII FROM THE SPATHIAN (EARLY TRIASSIC OF CHAOHU (ANHUI PROVINCE, CHINA

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ANDREA TINTORI

2014-07-01

Full Text Available A new species of Saurichthys, S. majiashanensis , is described. It comes from a series of marine vertebrate-bearing beds of the upper member of the Nanlinghu Formation outcropping in the large quarry at the top of Majiashan (Majia Hill near Chaohu (Hefei City, Anhui Province, China. Its age is Middle Spathian (Olenekian, Early Triassic. This new species deeply differs from the several pre-Spathian species of Saurichthys mainly for having only two longitudinal scale rows together with a reduced grid-like structure for the neural elements in the vertebral column. Further derived characters are in the endoskeleton of the dorsal and anal fin, where radials articulate only to anterior lepidotrichia, the posterior ones being supported by the first scale from the caudal pedicle mid-dorsal and mid-ventral rows, deeply imbedded in the body. In addition, the haemal spines of the caudal region are much enlarged and reversed, with their distal parts pointing forwards. Though the skull is lacking, postcranial characters are enough to justify the erection of a new species. This new Saurichthys species, together with other few actinopterygians, can be considered as the oldest assemblage of the Triassic Middle Fish Fauna, which bloomed probably in the early Anisian and widespread especially all over the Tethys for the Middle Triassic and at least the Carnian in the Late Triassic. This new fish assemblage, together with some of the oldest marine reptiles, is considered as the beginning of the actual Triassic recovery among marine vertebrates.

FIRST RECORD OF Alburnus atropatenae (BERG, 1925 (CYPRINIDAE IN NAMAK BASIN, CENTRAL IRAN

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Somaye Khataminejad

2013-01-01

Full Text Available Alburnus atropatenae Berg, 1925 is reported for the first time from the River Ghareh-Chay in the Namak basin, central Iran. Previously, this species has only been reported from the Lake Orumiyeh basin, in northwest Iran. In this report twenty-nine specimens were caught on 8 August 2012. Morphometric and meristic characteristics of the specimens were similar to those reported elsewhere for the species.

Squalius namak, a new chub from Lake Namak basin in Iran (Teleostei: Cyprinidae).

Science.gov (United States)

Khaefi, Roozbehan; Esmaeili, Hamid Reza; Sayyadzadeh, Golnaz; Geiger, Matthias F; Freyhof, Jörg

2016-09-19

Squalius namak, new species, from the endorheic Lake Namak and Kavir basins in Iran, is distinguished from the species of the genus Squalius in the Persian Gulf and the southern Caspian Sea basins by having a wide and thick symphysial knob on the lower jaw, a convex posterior anal-fin margin, a bold, dark-grey or brown, roundish or crescent-shaped blotch at the posterior tip of each flank scale and orange caudal-, anal- and pelvic-fin rays in life. Squalius namak is also characterized by four fixed, diagnostic nucleotide substitutions in the mtDNA COI barcode region.

FIRST RECORD OF Alburnus atropatenae (BERG, 1925) (CYPRINIDAE) IN NAMAK BASIN, CENTRAL IRAN

OpenAIRE

Somaye Khataminejad; Hamed Mousavi-Sabet; Masud Sattari; Saber Vatandoust

2013-01-01

Alburnus atropatenae Berg, 1925 is reported for the first time from the River Ghareh-Chay in the Namak basin, central Iran. Previously, this species has only been reported from the Lake Orumiyeh basin, in northwest Iran. In this report twenty-nine specimens were caught on 8 August 2012. Morphometric and meristic characteristics of the specimens were similar to those reported elsewhere for the species.

Artificial reproduction of wild and cultured barbel (Barbus barbus, Cyprinidae) under controlled conditions.

Science.gov (United States)

Targońska, Katarzyna; Kucharczyk, Dariusz; Zarski, Daniel; Cejko, Beata Irena; Krejszeff, Sławomir; Kupren, Krzysztof; Król, Radosław; Dryl, Katarzyna; Kowalski, Radosław Kajetan; Glogowski, Jan

2011-09-01

The aim of this work was to compare the effects of controlled reproduction of cultured and wild common barbel, Barbus barbus (L.). Preparations containing different GnRH analogues and dopamine receptor antagonists (Ovopel, Ovaprim) as well as human chorionic gonadotropin (hCG) (in the case of cultured fish) were applied and their influence on ovulation, spermiation and quality of gametes obtained was determined. No differences in the qualitative or quantitative parameters of semen were found between fish stimulated with different hormonal preparations and those not receiving hormonal stimulation. The high suitability of Ovaprim for ovulation induction in (cultured and wild) barbel was confirmed. The highest synchronisation of ovulation was obtained after the application of Ovopel (18 ± 3 h), but the best results of controlled reproduction (expressed as the percentage of ovulations and survival of embryos) were obtained by applying Ovaprim (83.2 ± 4.1). A significantly higher percentage of ovulation was obtained in cultured fish (80-90%) than in wild fish (< 25%).

Two new species of shovel-jaw carp Onychostoma (Teleostei: Cyprinidae) from southern Vietnam.

Science.gov (United States)

Hoang, Huy Duc; Pham, Hung Manh; Tran, Ngan Trong

2015-05-22

Two new species of large shovel-jaw carps in the genus Onychostoma are described from the upper Krong No and middle Dong Nai drainages of the Langbiang Plateau in southern Vietnam. These new species are known from streams in montane mixed pine and evergreen forests between 140 and 1112 m. Their populations are isolated in the headwaters of the upper Sre Pok River of the Mekong basin and in the middle of the Dong Nai basin. Both species are differentiated from their congeners by a combination of the following characters: transverse mouth opening width greater than head width, 14-17 predorsal scales, caudal-peduncle length 3.9-4.2 times in SL, no barbels in adults and juveniles, a strong serrated last simple ray of the dorsal fin, and small eye diameter (20.3-21.5% HL). Onychostoma krongnoensis sp. nov. is differentiated from Onychostoma dongnaiensis sp. nov. by body depth (4.0 vs. 3.2 times in SL), predorsal scale number (14-17 vs. 14-15), dorsal-fin length (4.5 vs. 4.2 times in SL), caudal-peduncle length (3.9 vs. 4.2 times in SL), colour in life (dark vs. bright), and by mitochondrial DNA (0.2% sequence divergence). Molecular evidence indicates that both species are members of Onychostoma and are distinct from all congeners sampled (uncorrected sequence divergences at the 16S rRNA gene of >2.0% for all Onychostoma for which homologous 16S rRNA sequences are available).

Microsatellite Development for an Endangered Bream Megalobrama pellegrini (Teleostei, Cyprinidae Using 454 Sequencing

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Zuogang Peng

2012-03-01

Full Text Available Megalobrama pellegrini is an endemic fish species found in the upper Yangtze River basin in China. This species has become endangered due to the construction of the Three Gorges Dam and overfishing. However, the available genetic data for this species is limited. Here, we developed 26 polymorphic microsatellite markers from the M. pellegrini genome using next-generation sequencing techniques. A total of 257,497 raw reads were obtained from a quarter-plate run on 454 GS-FLX titanium platforms and 49,811 unique sequences were generated with an average length of 404 bp; 24,522 (49.2% sequences contained microsatellite repeats. Of the 53 loci screened, 33 were amplified successfully and 26 were polymorphic. The genetic diversity in M. pellegrini was moderate, with an average of 3.08 alleles per locus, and the mean observed and expected heterozygosity were 0.47 and 0.51, respectively. In addition, we tested cross-species amplification for all 33 loci in four additional breams: M. amblycephala, M. skolkovii, M. terminalis, and Sinibrama wui. The cross-species amplification showed a significant high level of transferability (79%–97%, which might be due to their dramatically close genetic relationships. The polymorphic microsatellites developed in the current study will not only contribute to further conservation genetic studies and parentage analyses of this endangered species, but also facilitate future work on the other closely related species.

Age and growth of Labeo gonius (Cyprinidae) in Kali river, Uttar Pradesh, India

Digital Repository Service at National Institute of Oceanography (India)

Chatterji, A.

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Ancient connections among the European rivers and watersheds revealed from the evolutionary history of the genus Telestes (Actinopterygii; Cypriniformes)

Science.gov (United States)

Buj, Ivana; Ćaleta, Marko; Šanda, Radek; Geiger, Matthias F.; Freyhof, Jörg; Machordom, Annie; Vukić, Jasna

2017-01-01

In order to better understand the complex geologic history of the Mediterranean area, we have analysed evolutionary history, phylogeographic structure and molecular diversity of freshwater fishes belonging to the genus Telestes. As primary freshwater fishes distributed largely in the Mediterranean basin, this genus represents a suitable model system for investigating the historical biogeography of freshwater drainage systems in southern Europe. In this investigation we have included samples representing all Telestes species and based our analyses on one mitochondrial and one nuclear gene. We have investigated phylogenetic structure inside the genus Telestes, estimated divergence times, reconstructed ancestral distribution ranges and described intraspecific molecular diversity. Diversification of Telestes started in the Early Miocene, when the ancestors of T. souffia, lineage comprising T. croaticus and T. fontinalis, and the one comprising T. pleurobipunctatus and T. beoticus got isolated. The remaining species are genetically more closely related and form a common cluster in the recovered phylogenetic trees. Complex geological history of southern Europe, including formation of continental bridges, fragmentation of landmass, closing of the sea corridor, local tectonic activities, led to complicated biogeographical pattern of this genus, caused by multiple colonization events and passovers between ancient rivers and water basins. Especially pronounced diversity of Telestes found in the Adriatic watershed in Croatia and Bosnia and Herzegovina is a consequence of a triple colonization of this area by different lineages, which led to an existence of genetically distinct species in neighboring areas. Significant intraspecific structuring is present in T. souffia, T. muticellus, T. croaticus and T. pleurobipunctatus. Besides in well-structured species, elevated levels of genetic polymorphism were found inside T. turskyi and T. ukliva, as a consequence of their old origin

Ancient connections among the European rivers and watersheds revealed from the evolutionary history of the genus Telestes (Actinopterygii; Cypriniformes.

Directory of Open Access Journals (Sweden)

Ivana Buj

Full Text Available In order to better understand the complex geologic history of the Mediterranean area, we have analysed evolutionary history, phylogeographic structure and molecular diversity of freshwater fishes belonging to the genus Telestes. As primary freshwater fishes distributed largely in the Mediterranean basin, this genus represents a suitable model system for investigating the historical biogeography of freshwater drainage systems in southern Europe. In this investigation we have included samples representing all Telestes species and based our analyses on one mitochondrial and one nuclear gene. We have investigated phylogenetic structure inside the genus Telestes, estimated divergence times, reconstructed ancestral distribution ranges and described intraspecific molecular diversity. Diversification of Telestes started in the Early Miocene, when the ancestors of T. souffia, lineage comprising T. croaticus and T. fontinalis, and the one comprising T. pleurobipunctatus and T. beoticus got isolated. The remaining species are genetically more closely related and form a common cluster in the recovered phylogenetic trees. Complex geological history of southern Europe, including formation of continental bridges, fragmentation of landmass, closing of the sea corridor, local tectonic activities, led to complicated biogeographical pattern of this genus, caused by multiple colonization events and passovers between ancient rivers and water basins. Especially pronounced diversity of Telestes found in the Adriatic watershed in Croatia and Bosnia and Herzegovina is a consequence of a triple colonization of this area by different lineages, which led to an existence of genetically distinct species in neighboring areas. Significant intraspecific structuring is present in T. souffia, T. muticellus, T. croaticus and T. pleurobipunctatus. Besides in well-structured species, elevated levels of genetic polymorphism were found inside T. turskyi and T. ukliva, as a consequence

[THE MICROSPORIDIUM GLUGEA GASTEROSTEI VORONIN 1974 (MICROSPORIDIA: MARINOSPORIDIA) FROM THE THREE-SPINED STICKLEBACK GASTEROSTEUS ACULEATUS (ACTINOPTERYGII: GASTEROSTEIFORMES) AS AN INDEPENDENT SPECIES].

Science.gov (United States)

Tokarev, Y S; Voronin, V N; Senderskiy, I V; Issi, I V

2015-01-01

The microsporidium Glugea gasterostei from the three-spined stickleback Gasterosteus aculeatus was described as an independent species basing upon morphological and ecological traits of the parasite (Voronin, 1974), further supported by ultrastructural characters of its spores (Voronin, 1983). During the revision of microsporidia of the genus Glugea (Canning, Lom, 1986; Lom, 2002), the validity of this species was doubted and it was synonymized with G. anomala. Nevertheless, the molecular phylogenetic analysis performed in the present study showed the unique molecular haplotype of small subunit rRNA gene of G. gasterostei (Genbank accession number KM977990) and its close relatedness to G. anomala, G. atherinae and G. hertwigi (sequence similarity of 99.7 %). One of typical characters of G. gasterostei, as opposed to G. anomala, is the formation of xenomas on inner tissues and not on the surface of infected fishes. This feature is retained even after the infection of different host species. Taken together, these data confirm the validity of G. gasterostei as a separate species among closely related taxa that had diverged comparatively recently.

Histological and allometric growth analysis of eye in Caspian kutum, Rutilus kutum Kamensky, 1901 (Teleostei: Cyprinidae during early developmental stages

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Shaghayegh Hasanpour

2016-10-01

Full Text Available Fish larvae have several sensory systems that are functional at or soon after hatching and then are developed further during larval and juvenile stages. This study was conducted to investigate development of the eye in Rutilus kutum, based on histological and allometric growth analysis during early developmental stages up to 35 day post hatching with emphasis on retinal morphology. For this purpose, the histological sections were prepared and allometric growth pattern of the eye was calculated. The results showed that the most eye’s structures along with the retina of the newly hatched larvae, as the inner sensory (photosensitive tissue were completely differentiated. Allometric growth pattern of the eye diameter up to the inflexion point (7 dph was somewhat positive and then it became negative. The results revealed that the Caspian kutum is dependence on visual capability as visual feeder during their larval period which itself explains completion of eye structures and the high growth rate of eye before 3 dph i.e. beginning of mixed feeding.

KOMPOSISI IKAN HASIL TANGKAPAN JARING INSANG DI KAWASAN SUAKA PERIKANAN TELUK RASAU, SUMATERA SELATAN

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Melfa Marini

2016-05-01

fish composition from different mesh sizes of gillnet catches, the most operated fishing gears in Teluk Rasau fisheries reserve, was conducted three times in August, October and November 2009. Fish samples were collected from multi mesh size gillnet experiment and from fishers catches. The of results indicated that 31 fish species were found of 15 families, dominated by Cyprinidae. Most of this family included in catches by 0.75 inche mesh size both in August (dry season and October-November (wet season with percentage of 93.10, 92.8, and 78.3%, respectively. In August, the lowest fish composition (0.86% was recorded from the mesh size of 2.25 inch, is while in October and November was recorded in 3 inche mesh size, 0.63 and 2.23%, respectively. Based on the score analyzed of the number of fish species, fish population and ecological parameter, Teluk Rasau floodplain fisheries reserve is classifield into the low function and less effective as fish sanctuary area in the increasing fish productivity.

Determining the diet of larvae of western rock lobster (Panulirus cygnus using high-throughput DNA sequencing techniques.

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Richard O'Rorke

Full Text Available The Western Australian rock lobster fishery has been both a highly productive and sustainable fishery. However, a recent dramatic and unexplained decline in post-larval recruitment threatens this sustainability. Our lack of knowledge of key processes in lobster larval ecology, such as their position in the food web, limits our ability to determine what underpins this decline. The present study uses a high-throughput amplicon sequencing approach on DNA obtained from the hepatopancreas of larvae to discover significant prey items. Two short regions of the 18S rRNA gene were amplified under the presence of lobster specific PNA to prevent lobster amplification and to improve prey amplification. In the resulting sequences either little prey was recovered, indicating that the larval gut was empty, or there was a high number of reads originating from multiple zooplankton taxa. The most abundant reads included colonial Radiolaria, Thaliacea, Actinopterygii, Hydrozoa and Sagittoidea, which supports the hypothesis that the larvae feed on multiple groups of mostly transparent gelatinous zooplankton. This hypothesis has prevailed as it has been tentatively inferred from the physiology of larvae, captive feeding trials and co-occurrence in situ. However, these prey have not been observed in the larval gut as traditional microscopic techniques cannot discern between transparent and gelatinous prey items in the gut. High-throughput amplicon sequencing of gut DNA has enabled us to classify these otherwise undetectable prey. The dominance of the colonial radiolarians among the gut contents is intriguing in that this group has been historically difficult to quantify in the water column, which may explain why they have not been connected to larval diet previously. Our results indicate that a PCR based technique is a very successful approach to identify the most abundant taxa in the natural diet of lobster larvae.

A new species of the genus Salaria Forsskål, 1775 (Actinopterygii, Blennidae in Morocco

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Yahyaoui, A.

2011-12-01

Full Text Available The North African freshwater fish fauna is scarce compared to other regions of the world, probably due to historical and climatic factors. The western part of North Africa is more diverse than central or eastern areas. Populations of freshwater blennids that have been traditionally ascribed to the species Salaria fluviatilis nowadays inhabit the Sebou basin in Morocco. In this study we demonstrated morphologically and molecularly that these Moroccan populations constitute a new species, for which we provide a formal description. The following diagnostic characters distinguish the newly described species from other freshwater blennids: head without diagonal rows of dark dots or blotches on cheeks; supra-ocular tentacle thick and simple (not branched; 13-15 teeth on the upper jaw and 14-16 on the lower jaw; 16-17 soft anal fin rays; short pre-orbital distance (cephalic index: 2.9-3.8; height of the anterior (spiny part of the dorsal fin short (dorsal fin index: 0.8-1.3 and 34 vertebrae. Mitochondrial and nuclear genetic distances between the new Salaria species and either S. economidisi or S. fluviatilis are high, especially in the mitochondrial control region (18%, while these genetic distances range from 2 to 3% when the nuclear S7 marker is compared. These morphological and molecular characters differentiate the new species from the remaining freshwater species of the genus (Salaria economidisi and S. fluviatilis. The new species is confined to a small restricted area of the Sebou basin in Morocco and should be considered endangered (EN according to the IUCN Red List.La fauna de peces de agua dulce del norte de África es escasa comparada con otras regiones del mundo debido fundamentalmente a factores históricos y climáticos. El oeste del norte de África es más diverso que las regiones del centro y del este. En la cuenca del río Sebou habitan actualmente poblaciones de blenios de agua dulce que han sido tradicionalmente adscritas a la especie Salaria fluviatilis. En este estudio demostramos morfológica y molecularmente que estas poblaciones marroquíes constituyen una nueva especie, para la cual proveemos una descripción formal. Los siguientes caracteres diagnósticos distinguen a la nueva especie descrita del resto de especies de blenios de agua dulce: cabeza sin una fila diagonal de puntos oscuros o manchas en las mejillas; tentáculo supraocular grueso y simple (no ramificado; 13-15 dientes en la mandíbula superior y 14-16 en la inferior; 16-17 radios blandos en la aleta anal; distancia preorbital corta (índice cefálico: 2.9-3.8; altura de la region anterior de la aleta dorsal corta (índice dorsal: 0.8-1.3 y 34 vértebras. Las distancias genéticas mitocondriales y nuclear entre la nueva especie de Salaria y las otras dos especies son altas, especialmente en la región control (18%, mientras que estas distancias genéticas variaron entre 2-3% para el gen nuclear S7. Estos caracteres morfológicos y moleculares diferencian a la nueva especie del resto de blenios de agua dulce del género (Salaria fluviatilis y S. economidisi. La nueva especie está confinada a la cuenca del río Sebou en Marruecos y debería ser considerada como En Peligro (EN de acuerdo a las categorías de la lista roja.

The South American freshwater fish Prochilodus lineatus (Actinopterygii: Characiformes: Prochilodontidae): new species in Vietnamese aquaculture

Czech Academy of Sciences Publication Activity Database

Kalous, L.; Bui, A.T.; Petrtýl, M.; Bohlen, Jörg; Chaloupková, P.

2012-01-01

Roč. 43, č. 6 (2012), 955-958 ISSN 1355-557X Grant - others:MZe(CZ) 29/MZe/B/08-10 Institutional research plan: CEZ:AV0Z50450515 Keywords : exotic species * aquaculture * Prochilodus lineatus Subject RIV: GL - Fishing Impact factor: 1.422, year: 2012

On the possibility of using biological toxicity tests to monitor the work of wastewater treatment plants

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Zorić Jelena

2008-01-01

Full Text Available The aim of this study was to ascertain the possibility of using biological toxicity tests to monitor influent and effluent wastewaters of wastewater treatment plants. The information obtained through these tests is used to prevent toxic pollutants from entering wastewater treatment plants and discharge of toxic pollutants into the recipient. Samples of wastewaters from the wastewater treatment plants of Kragujevac and Gornji Milanovac, as well as from the Lepenica and Despotovica Rivers immediately before and after the influx of wastewaters from the plants, were collected between October 2004 and June 2005. Used as the test organism in these tests was the zebrafish Brachydanio rerio Hamilton - Buchanon (Cyprinidae. The acute toxicity test of 96/h duration showed that the tested samples had a slight acutely toxic effect on B. rerio, except for the sample of influent wastewater into the Cvetojevac wastewater treatment plant, which had moderately acute toxicity, indicating that such water should be prevented from entering the system in order to eliminate its detrimental effect on the purification process.

KHAWIA SAUROGOBII N. SP (CESTODA: CARYOPHYLLIDEA) FROM FRESHWATER FISH SAUROGOBIO SPP. (CYPRINIDAE) IN CHINA

Czech Academy of Sciences Publication Activity Database

Xi, B. W.; Oros, Mikuláš; Wang, G. T.; Wu, S. G.; Gao, D.; Nie, P.

2009-01-01

Roč. 95, č. 6 (2009), s. 1516-1519 ISSN 0022-3395 R&D Projects: GA ČR GA524/08/0885; GA MŠk LC522 Institutional research plan: CEZ:AV0Z60220518 Keywords : CESTOIDEA Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine Impact factor: 1.195, year: 2009

Reproductive biology of Garra regressus and Garra tana (Cypriniformes: Cyprinidae from Lake Tana, Ethiopia

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Akewake Geremew

2015-05-01

Full Text Available The reproductive biology of Garra regressus and Garra tana was investigated by collecting monthly samples (January to December 2006 from the southern Gulf of Lake Tana, where these species are endemic.  Garra regressus has an extended breeding time from April to October while G. tana breeds throughout the year with a peak from March to July.  The mean size at maturity in both the species was not significantly different between the sexes, but G. tana had a significantly lower mean size at maturity than G. regressus in female specimens.  Absolute fecundity estimates for G. regressus ranged from 580.8–1800, while those for G. tana ranged from 538.9–2968.  Egg size frequency distribution revealed that G. regressus is a multiple spawner, while G. tana is a single spawner.  The sex ratio in the total catch of G. regressus was found to be skewed in favour of females (Chi-square, P< 0.05, while those for G. tana was not significantly different from 1:1. The mean size at maturity was not significantly different between the sexes for G. tana. 

Comparative cytogenetics and chromosomal characteristics of ribosomal DNA in the fish genus Vimba (Cyprinidae)

Czech Academy of Sciences Publication Activity Database

Rábová, Marie; Ráb, Petr; Ozouf-Costaz, C.; Ene, C.; Wanzebock, J.

2003-01-01

Roč. 118, č. 1 (2003), s. 83-91 ISSN 0016-6707 R&D Projects: GA AV ČR IAA6045704 Institutional research plan: CEZ:AV0Z5045916 Keywords : chromosome banding * cytotaxonomy of Vimba * FISH Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.057, year: 2003

Karyotype and chromosome banding of endangered crucian carp, carassius carassius (Linnaeus, 1758) (Teleostei, Cyprinidae)

Czech Academy of Sciences Publication Activity Database

Knytl, M.; Kalous, L.; Ráb, Petr

2013-01-01

Roč. 7, č. 3 (2013), s. 205-215 ISSN 1993-0771 R&D Projects: GA ČR(CZ) GPP506/11/P596 Institutional support: RVO:67985904 Keywords : fish cytogenetics * paleotetraploid * heterochromatin * metaphase chromosomes Subject RIV: EG - Zoology Impact factor: 1.211, year: 2013

Long-term persistence, density dependence and effects of climate change on rosyside dace (Cyprinidae)

Science.gov (United States)

Gary D. Grossman; Gary Sundin; Robert E. Ratajczak

2016-01-01

SummaryWe used long-term population data for rosyside dace (Clinostomus funduloides), a numerically dominant member of a stochastically organised fish assemblage, to evaluate the relative importance of density-dependent and density-independent processes to population...

Population ecology and habitat preferences of juvenile flounder Platichthys flesus (Actinopterygii: Pleuronectidae) in a temperate estuary

Science.gov (United States)

Souza, Allan T.; Dias, Ester; Nogueira, Ana; Campos, Joana; Marques, João C.; Martins, Irene

2013-05-01

The European flounder Platichthys flesus is a widely distributed epibenthic species and an important component of demersal fish assemblages in the European Atlantic coastal waters. In Portuguese estuaries, this species reaches high densities, especially in Minho estuary (NW Iberian Peninsula, Europe), potentially playing an important role in the system's ecology. In this context, the population structure, production and the habitat use of juvenile P. flesus were investigated. Sampling took place monthly, from February 2009 until July 2010 along the entire estuarine gradient (5 sampling stations distributed in the first 29 km from the river mouth, with S1 located near the river mouth, S2 inside a salt marsh, S3 in a salinity transition zone, while S4 and S5 were located in the upper estuary). Flounder's density varied significantly among sampling stations and seasons (two-way PERMANOVA: p PERMANOVA: p < 0.001), with larger fishes being found in S1 during the autumn (168.50 ± 59.50 mm) and the smallest in S4 during the spring (33.80 ± 3.12 mm). Size classes associated differently with environmental variables, with larger juveniles being more abundant in the downstream areas of the estuary, whereas smaller juveniles were related to higher water temperatures, suggesting a habitat segregation of P. flesus of different sizes. The fish condition of P. flesus in Minho estuary was higher than in other systems, probably due to the dominance of juveniles on the population. Also, the densities found in this estuary were up to 32 times higher than in other locations, suggesting that Minho estuary is an important nursery area for the species. The estimated secondary production of P. flesus was lower than previous studies acknowledged in the system (0.037 g.WWm- 2.year- 1), indicating that the production estimates of this species in estuaries can vary considerably depending on of several factors such as the sampling year and strategy, population and fish size.

Distribution and size of the mojarra Diapterus rhombeus (Cuvier (Actinopterygii, Gerreidae in a Southeastern Brazilian bay

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Marcus Rodrigues da Costa

2012-06-01

Full Text Available Diapterus rhombeus is one of the most abundant fish species in the Sepetiba bay, which is a 520 km² semi-closed coastal area in Southeastern Brazil. The size and distribution of this species have been described in order to assess the use of the area as a rearing ground in both spatial and temporal (seasonal dimensions. A fish sampling program was conducted monthly by using an otter trawl between October 1998 and September 1999, in three bay zones (outer, middle and inner, defined according to depth and salinity gradient. Highly significant differences were found for CPUEs (number and biomass among seasons and zones. Size ranged from 50 to 230 mm TL, and three size-groups were defined according to a maturation scale (n = 1435: 1 - immature ( 100 mm TL. Immature and L50 individuals were more abundant (number and biomass during Autumn in the inner zone, while adults (L100 predominated during Summer in the outer zone. Evidences of movements of young-of-the-year (50-90 mm TL individuals from the inner to the outer zone were detected as they reach larger sizes (180 mm TL in the second year of life. Condition (k was higher in larger sized individuals in the outer zone during Spring, when they are apt to start the reproductive process. Two cohorts were detected according to modal progression: the first (smaller size showing faster growth than the second, evidencing a slower growth rate as they reach larger size. Distinct size classes occupying different bay zones suggest that the age-groups optimize their coexistence by partitioning the available resources, avoiding intra-specific competition.Diapterus rhombeus é uma das espécies de peixes mais abundantes na Baia de Sepetiba, ambiente costeiro de 520 km² de área semifechada no sudoeste do Brasil. O tamanho e distribuição dos indivíduos desta espécie foram descritos com o objetivo de determinar o uso das áreas de criação numa dimensão espacial e temporal (sazonal. Um programa de amostragem de arrasto de fundo foi conduzido mensalmente entre outubro 1998 a setembro 1999, em três zonas da baía (externa, central, interna, definidas através de gradientes de profundidade e salinidade. Diferenças altamente significativas foram encontradas para CPUEs (número e biomassa entre estações do ano e zonas. O comprimento variou de 50 a 230 mm CT. Três grupos de tamanhos foram definidos de acordo com uma escala de maturação gonadal (n = 1435: 1 - imaturo ( 100 mm CT. Imaturos e indivíduos L50 foram abundantes (número e biomassa durante o outono na zona interna, enquanto adultos (L100 predominaram durante o verão na zona externa. Evidências de movimento de indivíduos jovens (50-90 mm CT da zona interna para zona externa foram detectadas conforme os animais foram atingindo maiores tamanhos (180 mm CT, no segundo ano de vida. A condição (k aumentou em indivíduos maiores na zona externa durante a primavera, quando estes se tornam aptos a iniciar o processo reprodutivo. Duas coortes foram detectadas de acordo com a progressão modal: a primeira (menores tamanhos mostrando crescimento mais rápido do que a segunda, evidenciando uma taxa menor de crescimento a medida que atingem maiores tamanhos. Diferentes classes de comprimento ocupando diferentes zonas da baía sugerem que grupos de idades otimizam sua coexistência compartilhando os recursos disponíveis e evitando competição intra-especifica.

Distribution and size of the mojarra Diapterus rhombeus (Cuvier) (Actinopterygii, Gerreidae) in a Southeastern Brazilian bay

OpenAIRE

Costa,Marcus Rodrigues da; Albieri,Rafael Jardim; Neves,Leonardo Mitrano; Santos,Alex Braz Lacone; Araujo,Francisco Gerson

2012-01-01

Diapterus rhombeus is one of the most abundant fish species in the Sepetiba bay, which is a 520 km² semi-closed coastal area in Southeastern Brazil. The size and distribution of this species have been described in order to assess the use of the area as a rearing ground in both spatial and temporal (seasonal) dimensions. A fish sampling program was conducted monthly by using an otter trawl between October 1998 and September 1999, in three bay zones (outer, middle and inner), defined according ...

An Update on the Invasion of Weakfish Cynoscion regalis (Bloch & Schneider, 1801 (Actinopterygii: Sciaenidae into Europe

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Pedro Morais

2017-10-01

Full Text Available New information on weakfish introduction vectors, its invasive status, distribution, and use as a fishing resource arose after the publication of “The transatlantic introduction of weakfish Cynoscion regalis (Bloch & Schneider, 1801 (Sciaenidae, Pisces into Europe” by Morais and Teodósio (2016. Currently, the first known report of weakfish in Europe dates back to September 2009, with a specimen captured in the Schelde estuary (Belgium/The Netherlands. This fact suggests that weakfish could have been introduced into Europe via multiple and independent ballast water introduction events, and not through a point-source introduction event with subsequent dispersion as previously hypothesized. It is also unlikely that Schelde weakfish migrated southwards to colonize Iberian aquatic ecosystems. Weakfish have established a population in the Gulf of Cádiz region and have already reached an invasive status in the Sado estuary (Portugal. Weakfish were also captured in several other locations along the Portuguese coast, including the Tagus and Mira estuaries at least since 2013 or 2014, and the Ria Formosa lagoon in 2017. Tagus anglers caught weakfish specimens of ~1 kg and ~40 cm in November 2016, which corresponds to fish of 3+ years of age in the native range. The presence of weakfish in the Tagus estuary is still fairly unknown to local anglers. Sado weakfish has already been sold in local fish markets in southern Portugal for 3 to 10 € kg−1. However, we consider that the weakfish sale price is underrated in comparison with other wild species (e.g., meagre, seabass, gilthead seabream. Increasing sale price will convince fishers to use weakfish as a new fishing resource; however, it is necessary to promote the species among consumers and evaluate consumers’ preference in respect to other species. A putative biological threat might turn into a new valuable fishing resource by implementing adequate management solutions.

Fish, Actinopterygii, Perciformes, Gobiidae, Amblyeleotris rubrimarginata Mohlmann and Randall, 2002: range gap filled in northern Borneo

OpenAIRE

Townsend, Ditch

2010-01-01

The present work reports the shrimp goby Amblyeleotris rubrimarginata Mohlmann and Randall, 2002 in coral sand habitats off three different islands within the Tunku Abdul Rahman marine Park (TARP) off western Sabah in northern Borneo.

Morphological development and allometric growth patterns of Acipenser persicus Borodin, 1897 (Actinopterygii, Acipenseridae during early development

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Soheil Eagderi

2017-06-01

Full Text Available Morphological development and allometric growth patterns of reared Persian sturgeon, Acipenser persicus, were studied from hatching to 50 days post-hatching (dph. The larvae were sampled, their left sides photographed and seven morphometric characters, including total length, head length, tail length, trunk length, snout length, caudal peduncle and predorsal length were measured. Allometric growth patterns were calculated as a power function of total length and described using the growth coefficient to find important steps in early life history. The total length of the newly hatched larvae and fry were 10.59±0.8 and 38.8±2.9 mm at 1 and 50 dph, respectively. Morphogenesis and differentiation were the highest rates during the first 11 days of early development, i.e. endogenous feeding period. There were higher growth rate of head, snout and tail regions compared with those of other organs from the hatch up to yolk sac absorption, followed by positive or almost isometric patterns, after the begin of exogenous feeding, showing priority to enhance the feeding and swimming capabilities. This study confirmed that most of morphological changes of this species are occurred from hatching until the onset of exogenous feeding i.e. during the lecithotrophic phase.

A new grenadier of the genus Hymenocephalus from Tosa Bay, southern Japan (Actinopterygii: Gadiformes: Macrouridae)

DEFF Research Database (Denmark)

Nakayama, Naohide; Endo, Hiromitsu; Schwarzhans, Werner

2015-01-01

Hymenocephalus yamasakiorum, a new species of grenadier fishes, is described from a single specimen collected from Tosa Bay off Aki, Kochi, Japan, at a depth of 320–400 m. The species is distinguished from its 26 known congeners in having the following combination of features: pelvic-fin rays nine......; pectoral-fin rays i16–i17; first dorsal-fin rays II, 10; chin barbel 55 % of head length (HL), its tip extending beyond the hind margin of orbit when laid back; snout moderately high, not depressed, length 28 % HL; orbit diameter 33 % HL; interorbital width 24 % HL; gill rakers on first arch (outer...

Sequencing, description and phylogenetic analysis of the mitochondrial genome of Sarcocheilichthys sinensis sinensis (Cypriniformes: Cyprinidae).

Science.gov (United States)

Li, Chen; He, Liping; Chen, Chong; Cai, Lingchao; Chen, Pingping; Yang, Shoubao

2016-01-01

Sarcocheilichthys sinensis sinensis (Bleeker, 1871), is a small benthopelagic freshwater species with high nutritional and ornamental value. In this study, the complete mitochondrial genome of S. sinensis sinensis was determined; the phylogenetic analysis with another individual and closely related species of Sarcocheilichthys fishes was carried out. The complete mitogenome of S. sinensis sinensis was 16683 bp in length, consist of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and 2 non-coding regions: (D-loop and OL). It indicated that D-loop, ND2, and CytB may be appropriate molecular markers for studying population genetics and conservation biology of Sarcocheilichthys fishes.

A contribution to the data on tench (Tinca tinca L., Cyprinidae, pisces distribution in Serbia

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Marković Goran S.

2010-01-01

Full Text Available The studies on the ichthyofauna of Serbia that have been conducted so far indicate the sporadic tench (Tinca tinca L. presence in typical habitats. The hydroenvironmental conditions necessary for the survival of this fish species are highly variable and, generally, are more favourable in the northern part of the country (the Vojvodina Province. Although the tench presence has been registered at over 30 sites, there is a tendency of a decrease in population abundance. This is due to the reduction of the surface area of the macrophyte-covered flood zones induced by the damming and regulation of rivers, high water level fluctuations, and water amount reduction in the majority of watercourses, a massive increase in the number of allochthonous phytofagous species, reservoir sediment deposition, water quality deterioration and other factors. The tench conservation status in Serbia is officially designated as Low Risk - Least Concern. It may be transferred to a higher category if the tendency towards deterioration of survival conditions for the species should continue.

Ecology and potential for fishery of the small barbs (Cyprinidae, Teleostei) of Lake Tana, Ethiopia

OpenAIRE

Dejen, E.

2003-01-01

Lake Tana is by far the largest lake of Ethiopia and source of the Blue Nile. By feeding on zooplankton, small barbs (< 10 cm) occupy a central position in Lake Tana's ecosystem. Catching them could release pressure on the overexploited, unique species flock of large barbs (up to 100 cm). Aiming at small barbs, we need first to assess its possible impact on the food web and productivity. To advise on sustainable management, the biology and ecology of the small Barbus species in Lake Tana w...

Ecology and potential for fishery of the small barbs (Cyprinidae, Teleostei) of Lake Tana, Ethiopia

NARCIS (Netherlands)

Dejen, E.

2003-01-01

Lake Tana is by far the largest lake of Ethiopia and source of the Blue Nile. By feeding on zooplankton, small barbs (< 10 cm) occupy a central position in Lake Tana's ecosystem. Catching them could release pressure on the overexploited, unique species flock of large barbs (up to 100 cm).

Introgressive hybridization as a promoter of genome reshuffling in natural homoploid fish hybrids (Cyprinidae, Leuciscinae)

Czech Academy of Sciences Publication Activity Database

Pereira, C. S.; Aboim, M. A.; Ráb, Petr; Collares-Pereira, M. J.

2014-01-01

Roč. 112, č. 3 (2014), s. 343-350 ISSN 0018-067X Institutional support: RVO:67985904 Keywords : comparative genome hybridization * hybrid zones * introgression Subject RIV: EG - Zoology Impact factor: 3.805, year: 2014

The extraordinary biology and development of marsupial frogs (Hemiphractidae) in comparison with fish, mammals, birds, amphibians and other animals.

Science.gov (United States)

Del Pino, Eugenia M

2018-01-03

The study of oogenesis and early development of frogs belonging to the family Hemiphractidae provide important comparison to the aquatic development of other frogs, such as Xenopus laevis, because reproduction on land characterizes the Hemiphractidae. In this review, the multinucleated oogenesis of the marsupial frog Flectonotus pygmaeus (Hemiphractidae) is analyzed and interpreted. In addition, the adaptations associated with the incubation of embryos in the pouch of the female marsupial frog Gastrotheca riobambae (Hemiphractidae) and the embryonic development of this frog are summarized. Moreover, G. riobambae gastrulation is compared with the gastrulation modes of Engystomops randi and Engystomops coloradorum (Leptodactylidae); Ceratophrys stolzmanni (Ceratophryidae); Hyalinobatrachium fleischmanni and Espadarana callistomma (Centrolenidae); Ameerega bilinguis, Dendrobates auratus, Epipedobates anthonyi, Epipedobates machalilla, Epipedobates tricolor, and Hyloxalus vertebralis (Dendrobatidae); Eleutherodactylus coqui (Terrarana: Eleutherodactylidae), and X. laevis (Pipidae). The comparison indicated two modes of frog gastrulation. In X. laevis and in frogs with aquatic reproduction, convergent extension begins during gastrulation. In contrast, convergent extension occurs in the post-gastrula of frogs with terrestrial reproduction. These two modes of gastrulation resemble the transitions toward meroblastic cleavage found in ray-finned fishes (Actinopterygii). In spite of this difference, the genes that guide early development seem to be highly conserved in frogs. I conclude that the shift of convergent extension to the post-gastrula accompanied the diversification of frog egg size and terrestrial reproductive modes. Copyright © 2018 Elsevier B.V. All rights reserved.

SCARDINIUS GENUS IN MOLECULAR STUDIES – A REVIEW

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Ovidiu Popescul

2015-12-01

Full Text Available Scardinius is a genus of ray-finned fish in the Cyprinidae family commonly called rudds. The common rudd(Scardinius erithrophthalmus is a bentho-pelagic freshwater fish that occurs mainly in nutrient-rich, well vegetatedlowland rivers, backwaters, oxbows, ponds and lakes and it is widespread in Europe and middle Asia. It has a mediumlength of 20-30 cm, but it can reach 50 cm. The classification of cyprinids has always been controversial the morphologicaltraits have an unclear homology this led to the idea that the recognized monophyletic groups are surely misinterpreted. Thispaper aims to assess the current level of molecular data regarding Scardinius genera. Some of the molecular data obtainedfor Scardinius genus is from DNA barcoding studies on fresh water fishes, but studies regarding this genus and Cyprinidaefamily used mitochondrial genes like cytochrome b (cyt b and cytochrome oxidase (CO, but nuclear genes or nuclearmicrosatellites were also used. We found that molecular data exists for both nuclear and mitochondrial genes, but this genuswasn’t studied separately and as many of the researchers suggest more taxonomic studies are required in order to solve theuncertainties within it.

RESEARCH ON ARGES RIVER FISH FAUNA IN BUDEASA-GOLESTI AREA

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Alina-Mihaela Truţă

2015-12-01

Full Text Available Arges River was subject to periodic ichthyologic, hydrobiological and hydrological research. By its content and approach the present paper shows a series of research on fish fauna in Budeasa-Golesti area of Arges River, Pitesti. By research presented in the study we sought to evaluate the state and evolution of fish fauna in the city reservoirs, Pitesti area, over the last 30 years, trying to highlight the causes that led to the current situation and to propose measures for the conservation of natural fish fauna in the future. Fish fauna in Pitesti area currently consists of 14 species belonging to four families: Cyprinidae (9 species, Cobitidae (1 species, Esocidae (1 species and Percidae (3 species. Most species live naturally in lakes studied except for one species Pseudorasbora parva which was introduced accidentally. The research undertaken to reflect changes in the fish fauna in the last 30 years, indicates an increase in the number of species, either through deliberate stocking for sport fishing purposes or due to changes in biotope favouring the development of certain species which were accidental in the past.

A Bayesian framework to estimate diversification rates and their variation through time and space

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Silvestro Daniele

2011-10-01

Full Text Available Abstract Background Patterns of species diversity are the result of speciation and extinction processes, and molecular phylogenetic data can provide valuable information to derive their variability through time and across clades. Bayesian Markov chain Monte Carlo methods offer a promising framework to incorporate phylogenetic uncertainty when estimating rates of diversification. Results We introduce a new approach to estimate diversification rates in a Bayesian framework over a distribution of trees under various constant and variable rate birth-death and pure-birth models, and test it on simulated phylogenies. Furthermore, speciation and extinction rates and their posterior credibility intervals can be estimated while accounting for non-random taxon sampling. The framework is particularly suitable for hypothesis testing using Bayes factors, as we demonstrate analyzing dated phylogenies of Chondrostoma (Cyprinidae and Lupinus (Fabaceae. In addition, we develop a model that extends the rate estimation to a meta-analysis framework in which different data sets are combined in a single analysis to detect general temporal and spatial trends in diversification. Conclusions Our approach provides a flexible framework for the estimation of diversification parameters and hypothesis testing while simultaneously accounting for uncertainties in the divergence times and incomplete taxon sampling.

Freshwater fish Fauna and Restock Fish Activities of Reservoir in the Dardanelles (Canakkale-Turkey

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Hüseyin SASI

2012-06-01

Full Text Available Turkey has, with geographic location including Istanbul and Çanakkale straits the system, 178,000 km in length streams, 906,000 ha of natural lakes, and 411,800 ha of dam lakes, and 28,000 ha of ponds due to richness inland waters which include freshwater fish. The fingerling fish (fry were restocked approximately 250,000,000 in natural lakes, dam lakes and ponds for fisheries between years of 1979 and 2005. Canakkale has rich freshwater potential with 7 major rivers (Büyükdere, Karamenderes stream, Kavak brook, Kocacay stream, Sarıcay stream, Tuzla brook, Umurbey brook, 7 Dam Lakes (Atikhisar, Zeytinlikoy, Bayramic, Bakacak, Tayfur, Umurbey and Yenice-Gönen Dam lakes. In the studies, it has been determined that 15 fish species belonging to 6 families (Anguillidae, Atherinidae, Salmonidae, Cobitidae, Cyprinidae and Poecilidae can be found in reservoirs. Fish restocking of the activities of the reservoir until today approximately 1,120,000 (Cyprinus carpio L., 1758 is introduced. In this study, the activity of Canakkale province in the fish restocking and reservoir exploiting possibilities were discussed in view of reservoir fisheries potential which is used insufficiently today.

Notes on the occurrence of Trypanosoma sp. (Kinetoplastida: Trypanosomatidae in freshwater fishes from South Africa

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Maryke L. Ferreira

2013-03-01

Full Text Available A total of 257 fishes from four families, Clariidae, Cichlidae, Cyprinidae and Schilbeidae were collected from three localities: the Sand River Dam, Swaziland; the Nylsvlei Nature Reserve, South Africa and the Vaal Dam and Vaal River Barrage, South Africa. Only fishes (n= 154 from Clariidae and Cichlidae were found to be infected with trypanosomes. A total of 221 Clarias gariepinus (Burchell 1822 were collected from the Vaal Dam and Vaal Barrage area, South Africa. Of these, 74%(89/121 were infected with trypanosomes from the Vaal Dam and 63%(63/100 from the Vaal River Barrage, with no seasonal infection pattern. A prevalence of 25%(1/4 was found in C. gariepinus from the Sand River Dam, Swaziland, and a 50% (1/2 prevalence was found in Tilapia sparrmanii from the Nylsvlei Nature Reserve, South Africa. Standard measurements conformed closely to the morphometric and morphological descriptions of Trypanosoma mukasai. This article provides new locality records for T. mukasai from the Vaal Dam, Vaal River Barrage and Nylsvlei Nature Reserve (South Africa and the Sand River Dam (Swaziland. Tilapia sparrmanii collected in the Sand River Dam in Swaziland is also noted as a new host record.

Significant genetic differentiation between native and introduced silver carp (Hypophthalmichthys molitrix) inferred from mtDNA analysis

Science.gov (United States)

Li, S.-F.; Xu, J.-W.; Yang, Q.-L.; Wang, C.H.; Chapman, D.C.; Lu, G.

2011-01-01

Silver carp Hypophthalmichthys molitrix (Cyprinidae) is native to China and has been introduced to over 80 countries. The extent of genetic diversity in introduced silver carp and the genetic divergence between introduced and native populations remain largely unknown. In this study, 241 silver carp sampled from three major native rivers and two non-native rivers (Mississippi River and Danube River) were analyzed using nucleotide sequences of mitochondrial COI gene and D-loop region. A total of 73 haplotypes were observed, with no haplotype found common to all the five populations and eight haplotypes shared by two to four populations. As compared with introduced populations, all native populations possess both higher haplotype diversity and higher nucleotide diversity, presumably a result of the founder effect. Significant genetic differentiation was revealed between native and introduced populations as well as among five sampled populations, suggesting strong selection pressures might have occurred in introduced populations. Collectively, this study not only provides baseline information for sustainable use of silver carp in their native country (i.e., China), but also offers first-hand genetic data for the control of silver carp in countries (e.g., the United States) where they are considered invasive.

Fish assemblage structure and relations with environmental conditions in a Rocky Mountain watershed

Science.gov (United States)

Quist, M.C.; Hubert, W.A.; Isaak, D.J.

2004-01-01

Fish and habitat were sampled from 110 reaches in the Salt River basin (Idaho and Wyoming) during 1996 and 1997 to assess patterns in fish assemblage structure across a Rocky Mountain watershed. We identified four distinct fish assemblages using cluster analysis: (1) allopatric cutthroat trout (Oncorhynchus clarki (Richardson, 1836)); (2) cutthroat trout - brook trout (Salvelinus fontinalis (Mitchell, 1814)) - Paiute sculpin (Cottus beldingi Eigenmann and Eigenmann, 1891); (3) cutthroat trout - brown trout (Salmo trutta L., 1758) - mottled sculpin (Cottus bairdi Girard, 1850); and (4) Cyprinidae-Catostomidae. The distribution of fish assemblages was explained by thermal characteristics, stream geomorphology, and local habitat features. Reaches with allopatric cutthroat trout and the cutthroat trout - brook trout - Paiute sculpin assemblage were located in high-elevation, high-gradient streams. The other two fish assemblages were generally located in low-elevation streams. Associations between habitat gradients, locations of reaches in the watershed, and occurrence of species were further examined using canonical correspondence analysis. The results suggest that stream geomorphology, thermal conditions, and local habitat characteristics influence fish assemblage structure across a Rocky Mountain watershed, and they provide information on the ecology of individual species that can guide conservation activities. ?? 2004 NRC Canada.

Fish fauna of the Brahmaputra River, Bangladesh: richness, threats and conservation needs

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Shams Muhammad Galib

2015-12-01

Full Text Available The Brahmaputra River is one of the largest rivers in the world as well as in Bangladesh. The present study was carried out for a period of one year from January to December 2013 with a view to assessing the availability of fishes in the river with species emphasis on species richness, existing threats and conservation issues. Daytime and night sampling were carried out in three sites located along the upstream to downstream course of the river on a monthly basis. Three fishing gears including cast net, seine net and drag net and one fishing trap were employed to collect fishes. A total of 67 finfish species including 63 indigenous and 4 exotic/alien species have been recorded belonging to 46 genera, 24 families and 8 orders. Cypriniformes and Cyprinidae were the most dominating order (21 species family (15 species of native fishes. A small portion (2% of native fishes was globally threatened. Over one third of total species (38% were considered threatened to extinct species in Bangladesh. Population trend of over two third of total fish species was Declining in the river. Major threats were alien/invasive species, banned fishing gears and loss of habitats.

Testing freshwater Lago Mare dispersal theory on the phylogeny relationships of iberian cyprinid genera Chondrostoma and Squalius (Cypriniformes, Cyprinidae

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Carmona, José Ambrosio

2003-12-01

Full Text Available A phylogeny of the species in the genera Chondrostoma and Squalius was constructed based on the complete mitochondrial cytochrome b gene (1140pb. The molecular phylogeny was used to test the effect of the Mediterranean Lago Mare dispersal theory on the processes of divergence and speciation of European freshwater fishes. Phylogenetic relationships among Squalius samples and the molecular clock revealed that the ancestor of the current Iberian Squalius species inhabited a wide geographic area in the central and southwestern part of the former Iberian Peninsula during the Miocene before the Lago Mare phase. Similarly, the four main Iberian lineages of the genus Chondrostoma originated in the Middle-Upper Miocene. Hence, the Lago Mare phase of the Mediterranean Sea seems to have been a too recent paleogeographic event to have had any major impact on the dispersion of Squalius and Chondrostoma species. However, the reduction of the water-bodies during the Tortonian and Messinian may have intensified the isolation of populations. The Operational Biogeographic Units recovered from the Squalius and Chondrostoma phylogenies also reject the Lago Mare dispersal theory and support the idea that the differentiation processes were due to both the formation of the current hydrographical basin during the Plio-Pleistocene as well as to an earlier endorrheism event that occurred prior to hydrographical configuration.Realizamos una filogenia de los géneros Chondrostoma y Squalius mediante el estudio de la secuencia completa del gen mitocondrial citocromo b (1140pb. La filogenia molecular fue usada para comprobar el efecto que la teoría de dispersión del Mediterráneo Lago Mare ha tenido sobre los procesos de divergencia y especiación en los peces de agua dulce europeos. Las relaciones filogenéticas entre las muestras de Squalius y la aplicación del reloj molecular pusieron de manifiesto que el ancestro de las actuales especies ibéricas de Squalius habitaba

Oligomeric protein complexes of apolipoproteins stabilize the internal fluid environment of organism in redfins of the Tribolodon genus [Pisces; Cypriniformes, Cyprinidae].

Science.gov (United States)

Andreeva, Alla M; Serebryakova, Marina V; Lamash, Nina E

2017-06-01

One of the most important functions of plasma proteins in vertebrates is their participation in osmotic homeostasis in the organism. Modern concepts about plasma proteins and their capillary filtration are based on a model of large monomeric proteins that are able to penetrate the interstitial space. At the same time, it was revealed that a considerable amount of oligomeric complexes are present in the low-molecular-weight (LM) protein fraction in the extracellular fluids of fishes. The functions of these complexes are unknown. In the present study, we investigated the LM-fraction proteins in the plasma and interstitial fluid (IF) of redfins of the genus Tribolodon. This fish alternatively spends parts of its life cycle in saline and fresh waters. We identified the protein Wap65, serpins and apolipoproteins in this fraction. By combining the methods of 2D-E under native and denaturing conditions with MALDI, we demonstrated that only apolipoproteins formed complexes. We showed that serum apolipoproteins (АроА-I, Аро-14) were present in the form of homooligomeric complexes that were dissociated with the release of monomeric forms of proteins in the course of capillary filtration to IF. Dissociation of homooligomers is not directly correlated with the change in salinity but is correlated with seasonal dynamics. We found that there was a significant decrease in the total protein concentration in IF relative to plasma. Therefore, we suggested that dissociation of homooligomeric complexes from various apolipoproteins supports the isoosmoticity of extracellular fluids relative to capillary wall stabilization through a fluid medium in fish. Copyright © 2017 Elsevier Inc. All rights reserved.

Geological events and Pliocene climate fluctuations explain the phylogeographical pattern of the cold water fish Rhynchocypris oxycephalus (Cypriniformes: Cyprinidae) in China.

Science.gov (United States)

Yu, Dan; Chen, Ming; Tang, Qiongying; Li, Xiaojuan; Liu, Huanzhang

2014-10-25

Rhynchocypris oxycephalus is a cold water fish with a wide geographic distribution including the relatively warm temperate regions of southern China. It also occurs in second- and third-step geomorphic areas in China. Previous studies have postulated that high-altitude populations of R. oxycephalus in southern China are Quaternary glacial relics. In this study, we used the mitochondrial gene Cytb and the nuclear gene RAG2 to investigate the species phylogeographical patterns and to test two biogeographic hypotheses: (1) that divergence between lineages supports the three-step model and (2) climatic fluctuations during the Quaternary resulted in the present distribution in southern China. Phylogenetic analysis detected three major matrilines (A, B, and C); with matrilines B and C being further subdivided into two submatrilines. Based on genetic distances and morphological differences, matriline A potentially represents a cryptic subspecies. The geographic division between matrilines B and C coincided with the division of the second and third geomorphic steps in China, suggesting a historical vicariance event. Pliocene climatic fluctuations might have facilitated the southwards dispersal of R. oxycephalus in matriline C, with the subsequent warming resulting in its split into submatrilines C1 and C2, leaving submatriline C2 as a relic in southern China. Our study demonstrates that geological events (three steps orogenesis) and climate fluctuations during the Pliocene were important factors in shaping phylogeographical patterns in R. oxycephalus. Notably, no genetic diversity was detected in several populations, all of which possessed unique genotypes. This indicates the uniqueness of local populations and calls for a special conservation plan for the whole species at the population level.

Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species.

Science.gov (United States)

Gilbert, Carter R; Mayden, Richard L; Powers, Steven L

2017-03-30

For many years the North American cyprinid fish Macrhybopsis aestivalis (common name: Speckled Chub) was regarded as a single widespread and morphologically variable species, occurring in rivers throughout much of the Mississippi Valley and geographically adjacent eastern Gulf slope drainages, west to the Rio Grande basin in Texas, New Mexico, and Mexico. Eisenhour (1997) completed a morphological study of western populations of the Speckled Chub, the results of which appeared thereafter in published form (Eisenhour 1999, 2004). He demonstrated the existence of five valid species west of the Mississippi River (aestivalis, marconis, australis, tetranema, hyostoma), of which the name aestivalis was shown to be restricted to the population occurring in the Rio Grande and the geographically adjacent Rio San Fernando system, in northeastern Mexico. Eisenhour (2004) considered populations throughout the middle Mississippi Valley and its major tributaries to be a single morphologically variable species (hyostoma), and he also indicated that populations of Macrhybopsis from eastern Gulf slope drainages may represent a complex of species. Genetic confirmation of Eisenhour's conclusions regarding western species appeared in the publication by Underwood et al. (2003), who also showed that western populations of M. hyostoma, as presently recognized, are genetically much more complex than previously considered.     Meanwhile, the present authors were involved in a companion study of eastern populations of Macrhybopsis, for which a genetic summary of the eastern Gulf coast species was published by Mayden & Powers (2004). Based on their findings, four species were recognized from southeastern drainages (identified as species A-D), although no formal taxonomic descriptions were included. Their genetic data, in combination with meristic, morphometric and other morphological data presented herein, form the basis for a revised classification of eastern Macrhybopsis populations

Evolution of the branchiostegal membrane and restricted gill openings in Actinopterygian fishes.

Science.gov (United States)

Farina, Stacy C; Near, Thomas J; Bemis, William E

2015-06-01

A phylogenetic survey is a powerful approach for investigating the evolutionary history of a morphological characteristic that has evolved numerous times without obvious functional implications. Restricted gill openings, an extreme modification of the branchiostegal membrane, are an example of such a characteristic. We examine the evolution of branchiostegal membrane morphology and highlight convergent evolution of restricted gill openings. We surveyed specimens from 433 families of actinopterygians for branchiostegal membrane morphology and measured head and body dimensions. We inferred a relaxed molecular clock phylogeny with branch length estimates based on nine nuclear genes sampled from 285 species that include all major lineages of Actinopterygii. We calculated marginal state reconstructions of four branchiostegal membrane conditions and found that restricted gill openings have evolved independently in at least 11 major actinopterygian clades, and the total number of independent origins of the trait is likely much higher. A principal component analysis revealed that fishes with restricted gill openings occupy a larger morphospace, as defined by our linear measurements, than do fishes with nonrestricted openings. We used a decision tree analysis of ecological data to determine if restricted gill openings are linked to certain environments. We found that fishes with restricted gill openings repeatedly occur under a variety of ecological conditions, although they are rare in open-ocean pelagic environments. We also tested seven ratios for their utility in distinguishing between fishes with and without restricted gill openings, and we propose a simple metric for quantifying restricted gill openings (RGO), defined as a ratio of the distance from the ventral midline to the gill opening relative to half the circumference of the head. Functional explanations for this specialized morphology likely differ within each clade, but its repeated evolution indicates a need

Reproduction of Baltic cod, Gadus morhua (Actinopterygii: Gadiformes: Gadidae), in the Gotland Basin: Causes of annual variability

DEFF Research Database (Denmark)

Plikshs, Maris; Hinrichsen, Hans-Harald; Elferts, D.

2015-01-01

observations during 1969–1995 on four stations in each of two transects. The oceanographic monitoring and demersal trawl research survey data from 1974–2012 have been used in analyses. Results. The sufficient reproduction conditions in the southern Gotland Basin persisted only until 1981. In later decades...... reproduction volume concept can be used as an ecological indicator for egg survival probability in the Gotland Basin. However, it is too premature to re-define the concept of the suitable reproduction volume because it is applicable only to the Gotland spawning ground...

Moderate pathogenic effect of Ligophorus uruguayense (Monogenoidea, Ancyrocephalidae in juvenile mullet Mugil liza (Actinopterygii, Mugilidae from Brazil

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EDUARDO PAHOR-FILHO

2017-10-01

Full Text Available ABSTRACT Monogenoidea pathogenic activity can elicit various histological responses in fish. Species of Ligophorus are specific parasites of mullets, and its relationship with host fish may result in a moderate pathogenic action. In order to ascertain this relationship, estuarine mullets (Mugil liza were collected in an estuary, reared in laboratory, for three weeks, and forwarded for histological and parasitological analyses. Ligophorus uruguayense (Monogenoidea infestation in the gills of the mullets was identified. The severe infestation by only one species of Monogenoidea may result from the specificity of these parasites to mullets. Mullets submitted to histological analysis exhibited respiratory epithelium detachment; mild, moderate and severe hyperplasia of the respiratory epithelium; atrophy; and telangiectasia of the gills. This is the first study reporting that mullets highly infested by Monogenoidea can show mild (100% to severe (20% gill changes with a distinct frequency of occurrence. Because of the high prevalence of mild alterations observed, it is possible to accept that L. uruguayense is moderately pathogenic to M. liza, even during high prevalence and intensity of infestation, as a result of its specificity.

Moderate pathogenic effect of Ligophorus uruguayense (Monogenoidea, Ancyrocephalidae) in juvenile mullet Mugil liza (Actinopterygii, Mugilidae) from Brazil.

Science.gov (United States)

Pahor-Filho, Eduardo; Klosterhoff, Marta C; Marchiori, Natalia C; Pereira, Joaber

2017-01-01

Monogenoidea pathogenic activity can elicit various histological responses in fish. Species of Ligophorus are specific parasites of mullets, and its relationship with host fish may result in a moderate pathogenic action. In order to ascertain this relationship, estuarine mullets (Mugil liza) were collected in an estuary, reared in laboratory, for three weeks, and forwarded for histological and parasitological analyses. Ligophorus uruguayense (Monogenoidea) infestation in the gills of the mullets was identified. The severe infestation by only one species of Monogenoidea may result from the specificity of these parasites to mullets. Mullets submitted to histological analysis exhibited respiratory epithelium detachment; mild, moderate and severe hyperplasia of the respiratory epithelium; atrophy; and telangiectasia of the gills. This is the first study reporting that mullets highly infested by Monogenoidea can show mild (100%) to severe (20%) gill changes with a distinct frequency of occurrence. Because of the high prevalence of mild alterations observed, it is possible to accept that L. uruguayense is moderately pathogenic to M. liza, even during high prevalence and intensity of infestation, as a result of its specificity.

Spawning migrations of the endemic Labeobarbus (Cyprinidae, Teleostei) species of Lake Tana, Ethiopia, status and threats

NARCIS (Netherlands)

Anteneh, W.; Getahun, A.; Dejen, E.; Sibbing, F.A.; Nagelkerke, L.A.J.; de Graaf, M.; Wudneh, T.; Vijverberg, J.; Palstra, A.P.

2012-01-01

The reproductive biology of the only known intact species flock of large cyprinids, the 16 Labeobarbus species of Lake Tana (Ethiopia), has been extensively studied for the past two decades. Seven species of Labeobarbus are known to migrate >50 km upstream into tributary rivers for spawning during

Spawning migrations of the endemic Labeobarbus (Cyprinidae, Teleostei) species of Lake Tana, Ethiopia: status and threats

NARCIS (Netherlands)

Anteneh, W.; Getahun, A.; Dejen, E.; Sibbing, F.A.; Nagelkerke, L.A.J.; Graaf, de M.; Wudneh, T.; Vijverberg, J.; Palstra, A.P.

2012-01-01

The reproductive biology of the only known intact species flock of large cyprinids, the 16 Labeobarbus species of Lake Tana (Ethiopia), has been extensively studied for the past two decades. Seven species of Labeobarbus are known to migrate >50 km upstream into tributary rivers for spawning

Postglacial recolonization of eastern Blacknose Dace,Rhinichthys atratulus(Teleostei: Cyprinidae), through the gateway of New England.

Science.gov (United States)

Tipton, Michelle L; Gignoux-Wolfsohn, Sarah; Stonebraker, Phoebe; Chernoff, Barry

2011-11-01

During the last ice age, much of North America far south as 40°N was covered by glaciers (Hewitt 2000). About 20,000 years ago, as the glaciers retreated, the hydrologic landscape changed dramatically creating waterways for fish dispersal. The number of populations responsible for recolonization and the regions from which they recolonized are unknown for many freshwater fishes living in New England and southeastern Canada. The Blacknose Dace,Rhinichthys atratulus, is one of the freshwater fish species that recolonized this region. We hypothesize that the earliest deglaciated region, modern-day Connecticut, was recolonized byR. atratulusvia a single founding event by a single population. In this paper, we test this hypothesis phylogenetically with regard to the major drainage basins within Connecticut. The mitochondrial DNA exhibits low nucleotide diversity, high haplotype diversity, and a dominant haplotype found across the state. A small percentage of individuals in the Housatonic drainage basin, however, share a haplotype with populations in New York drainage basins, a haplotype not found elsewhere in Connecticut's drainage basins. We calculated a range for the rate of divergence for NADH dehydrogenase subunit 2 (nd2) and control region (ctr) of 4.43-6.76% and 3.84-8.48% per million years (my), respectively. While this range is higher than the commonly accepted rate of 2% for mitochondrial DNA, these results join a growing list of publications finding high rates of divergence for various taxa (Peterson and Masel 2009). The data support the conclusion that Connecticut as a whole was recolonized initially by a single founding event that came from a single refugium. Subsequently, the Housatonic basin alone experienced a secondary recolonization event.

Reproductive strategies of two sympatric "small barbs" (Barbus humilis and B. tanapelagius, Cyprinidae) in Lake Tana

NARCIS (Netherlands)

Dejen, E.; Sibbing, F.A.; Vijverberg, J.

2003-01-01

The reproductive strategies of two species of 'small barbs' (12,000 fish). Both species have a long breeding period (from March to September), and the distinct bimodal size-frequency distributions of eggs suggest multiple spawning for both species. Absolute fecundity increased exponentially with

BIOCHEMICAL AND HISTOLOGICAL EFFECTS OF DELTAMETHRIN EXPOSURE ON THE GILLS OF CARASSIUS AURATUS GIBELIO (Pisces Cyprinidae

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DIANA COSTIN

2007-05-01

Full Text Available This study investigated the alterations in the activities of several antioxidant enzymes inthe gills of the freshwater fish Carassius auratus gibelio exposed to deltamethrin. To getthis goal, groups of 10 individuals were exposed for one, two, three, seven and fourteendays to sublethal concentration of deltamethrin (2 µg/L. Another group was used ascontrol. The activities of catalase, gluthatione peroxidase and gluthatione reductasewere significantly decreased, while the glutathione-S-transferase was up-regulated. Allfish, exposed to 2 µg/L deltamethrin revealed gills morphological alterations after 48h ofexposure which were accentuated after 14 days. In the gills hyperemia, fusion ofsecondary lamellae, epithelial layer rupture and chloride cells proliferation wereobserved. These results suggest that an immediate adaptive response to the oxidativestress appeared, demonstrating alterations in the antoxidant defense mechanism in thegills of deltamethrin intoxicated fish.

The reserpine effects on the gonadotrophic cells of the male common carp Cyprinus carpio (Osteichtyes: Cyprinidae

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Lilian González-Segura

2004-03-01

Full Text Available The secretion of gonadotropins (GtH in goldfish and carp, is stimulated by GtH-releasing hormone (GnRH and is inhibited by dopamine. Studies with antidopaminergics have demonstrated to be effective in order to stimulate the spermiation and the ovulation in different species of teleosts. The reserpine, a drug that deplets the dopamine, has shown to stimulate the spermiation in the common carp. We report here, the effects of reserpine on the number and volume of gonadotrophic cells of the common carp. Eight injections of reserpine alone, at doses of 0.5, 1.0 or 1.5 mg/ml/kg of body weight and at intervals of 48 hours, caused an increase in the number and volume of gonadotrophic cells. The dose 0.5 mg/ml/kg, presented an increase in the number and volume of gonadotrophic cells of 382% and 123%, respectively, above the control group. The dose 1.0 mg/ml/kg, showed an enhanced number and volume of gonadotrophic cells of 704% and 152%, respectively. With the dose 1.5 mg/ml/kg increase in number (171% and volume (106% of gonadotrophic cells was lower. The gonads of the experimental groups had an abundance of advanced states of spermatogenesis. Our results show that eight intraperitoneal injections of reserpine were responsible for an increase in gonadodrophic cell, number and volumeLa secreción de gonadotropinas (GtHs en pez dorado y carpas, es estimulada por la hormona liberadora de gonadotropinas (GnRH e inhibida por la dopamina. Trabajos previos con antidopaminérgicos demostraron ser efectivos para estimular la espermiación y ovulación, en varias especies de teleósteos. La reserpina, una sustancia que desaparece catecolaminas, se ha probado con éxito para estimular la espermiación en la carpa común. En este trabajo, reportamos los efectos de la reserpina en el número y volúmen de células gonadotropas en la carpa común. Se aplicaron ocho inyecciones de reserpina a dosis de 0.5, 1.0, y 1.5 mg/ml/kg de peso corporal, a intervalos de 48 horas entre cada inyección. Con la dosis de 0.5 mg/ml/kg, se encontró un aumento en el número de gonadotrofas de 382% y de 123% en el volumen, en comparación con los controles. La dosis de 1.0 mg/ml/kg presentó un aumento de 704% en el número de células y de 152% en el volumen celular. Con 1.5 mg/ml/kg se causó que las gonadotrofas aumentarán 171% en número y 106% en volumen. En general, las gónadas de los grupos experimentales presentaron estadios más avanzados de espermatogénesis. Nuestros resultados demuestran que ocho aplicaciones de reserpina provocan el incremento, tanto del número como del volumen, de células gonadotropas

Nuevo registro de Pterygoplichthys disjunctivus (Actinopterygii: Loricariidae) en la desembocadura del río Coahuayana, Coahuayana, Michoacán, México New record of Pterygoplichthys disjunctivus (Actinopterygii: Loricariidae) in the mouth of Coahuayana River, Coahuayana, Michoacán, Mexico

OpenAIRE

Edgar Raúl Sandoval-Huerta; Xavier Madrigal-Guridi; Adrián García-Meraz; Néstor Irepani Dimas-Mora; Omar Domínguez-Domínguez

2012-01-01

En la desembocadura del río Coahuayana, al noroeste del estado de Michoacán fue registrada la presencia del plecostoma rayado, Pterygoplichthys disjunctivus (Loricariidae). Se describe e ilustra un ejemplar adulto de sexo indeterminado, con longitud total de 386 mm, recolectado el 4 de julio de 2010.Vermiculated Salifin Catfish Pterygoplichthys disjunctivus (Loricariidae), is reported at the mouth of the river Coahuayana, northwest of the state of Michoacán, Mexico. On July 4, 2010, an adult ...

Nuevo registro de Pterygoplichthys disjunctivus (Actinopterygii: Loricariidae en la desembocadura del río Coahuayana, Coahuayana, Michoacán, México New record of Pterygoplichthys disjunctivus (Actinopterygii: Loricariidae in the mouth of Coahuayana River, Coahuayana, Michoacán, Mexico

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Edgar Raúl Sandoval-Huerta

2012-03-01

Full Text Available En la desembocadura del río Coahuayana, al noroeste del estado de Michoacán fue registrada la presencia del plecostoma rayado, Pterygoplichthys disjunctivus (Loricariidae. Se describe e ilustra un ejemplar adulto de sexo indeterminado, con longitud total de 386 mm, recolectado el 4 de julio de 2010.Vermiculated Salifin Catfish Pterygoplichthys disjunctivus (Loricariidae, is reported at the mouth of the river Coahuayana, northwest of the state of Michoacán, Mexico. On July 4, 2010, an adult specimen of this species was collected. The specimen measured 386 mm and sex was not determined. The specimen is described and illustrated.

A review of the Pseudobarbus afer (Peters, 1864 species complex (Teleostei, Cyprinidae in the eastern Cape Fold Ecoregion of South Africa

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Albert Chakona

2017-02-01

Full Text Available The Eastern Cape redfin, Pseudobarbus afer, has long been considered to be a single widespread and variable species occurring in multiple isolated river systems in the Cape Fold Ecoregion (CFE at the southern tip of Africa. Mitochondrial cytochrome b and control region sequence data of individuals from populations currently assigned to P. afer across the species’ distribution range revealed existence of four deeply divergent taxonomic units: (i the Mandela lineage confined to the Sundays, Swartkops and Baakens river systems, (ii the Krom lineage endemic to the Krom River system, (iii the St Francis lineage occurring in the Gamtoos and adjacent river systems, and (iv the Forest lineage occurring in several coastal river systems from the Tsitsikamma to the Klein Brak River system. The Forest lineage is closely related to P. phlegethon from the Olifants River system on the west coast of South Africa, suggesting that it does not belong to P. afer s.l. Herein we focus on the three lineages within the P. afer s.l. complex and provide new diagnosis for P. afer s.s (Mandela lineage, revalidate P. senticeps (Krom lineage as a distinct species, and describe a new species P. swartzi (St Francis lineage. The three species exhibit subtle differences, which explains why they were previously considered to represent a single variable and widespread species. Pseudobarbus senticeps differs from both P. afer and P. swartzi by having fewer (i.e. larger scales (25–33, mode 29 lateral line scale series; 10–12, mode 11 circumpeduncular scales and presence of a lateral stripe which terminates in a conspicuous triangular blotch at the base of the caudal fin. Long barbels which reach or surpass the vertical through the posterior edge of the eye further separate P. senticeps from P. afer s.s. which possesses simple short barbels which do not reach the vertical through the posterior margin of the eye. Pseudobarbus afer s.s differs from P. swartzi sp. n. by possession

Hox gene clusters in the Indonesian coelacanth, Latimeria menadoensis

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Koh, Esther G. L.; Lam, Kevin; Christoffels, Alan; Erdmann, Mark V.; Brenner, Sydney; Venkatesh, Byrappa

2003-01-01

The Hox genes encode transcription factors that play a key role in specifying body plans of metazoans. They are organized into clusters that contain up to 13 paralogue group members. The complex morphology of vertebrates has been attributed to the duplication of Hox clusters during vertebrate evolution. In contrast to the single Hox cluster in the amphioxus (Branchiostoma floridae), an invertebrate-chordate, mammals have four clusters containing 39 Hox genes. Ray-finned fishes (Actinopterygii) such as zebrafish and fugu possess more than four Hox clusters. The coelacanth occupies a basal phylogenetic position among lobe-finned fishes (Sarcopterygii), which gave rise to the tetrapod lineage. The lobe fins of sarcopterygians are considered to be the evolutionary precursors of tetrapod limbs. Thus, the characterization of Hox genes in the coelacanth should provide insights into the origin of tetrapod limbs. We have cloned the complete second exon of 33 Hox genes from the Indonesian coelacanth, Latimeria menadoensis, by extensive PCR survey and genome walking. Phylogenetic analysis shows that 32 of these genes have orthologs in the four mammalian HOX clusters, including three genes (HoxA6, D1, and D8) that are absent in ray-finned fishes. The remaining coelacanth gene is an ortholog of hoxc1 found in zebrafish but absent in mammals. Our results suggest that coelacanths have four Hox clusters bearing a gene complement more similar to mammals than to ray-finned fishes, but with an additional gene, HoxC1, which has been lost during the evolution of mammals from lobe-finned fishes. PMID:12547909

The post-larval and juvenile fish assemblage in the Sukhothai floodplain, Thailand

Science.gov (United States)

Siriwan, Suksri; Boonsatien, Boonsoong

2017-06-01

This study investigated abundance, species composition and spatial and temporal distributions of fish larvae and their relationship with some environmental variables in the Sukhothai floodplain in northern Thailand. Fish larvae were collected from 33 sampling stations on 8 occasions between August 2010 and October 2013. The study collected and identified 149 296 individuals, representing 32 families and 165 taxa. The species composition of larval fish was dominated by the Cyprinidae (47.27%), Cobitidae (7.88%), Siluridae (6.67%), Bagridae (6.06%) and Mastacembelidae (3.33%) families. The most-abundant larval species were the Striped flying barb Esomus metallicus (16.90%), the Siamese mud carp Henicorhynchus siamensis (8.48%) and the Sumatran river sprat Clupeichthys goniognathus (8.31%). The greatest abundance and species diversity of larvae were found when the river flow runs onto the floodplain. PCA and nMDS analysis revealed that the samples plot is associated with temporal distribution among years. The discharge was a major factor determining fish larvae assemblage and environmental variables in the Sukhothai floodplain. Four fish larval species were positively correlated with the samples for 2013. The result of the CCA ordination plot showed that only the discharge variable was strongly correlated with fish larvae abundance, especially two cyprinid Rasbora species.

Catchment-scale determinants of nonindigenous minnow richness in the eastern United States

Science.gov (United States)

Peoples, Brandon K.; Midway, Stephen R.; DeWeber, Jefferson T.; Wagner, Tyler

2018-01-01

Understanding the drivers of biological invasions is critical for preserving aquatic biodiversity. Stream fishes make excellent model taxa for examining mechanisms driving species introduction success because their distributions are naturally limited by catchment boundaries. In this study, we compared the relative importance of catchment-scale abiotic and biotic predictors of native and nonindigenous minnow (Cyprinidae) richness in 170 catchments throughout the eastern United States. We compared historic and contemporary cyprinid distributional data to determine catchment-wise native/nonindigenous status for 152 species. Catchment-scale model predictor variables described natural (elevation, precipitation, flow accumulation) and anthropogenic (developed land cover, number of dams) abiotic features, as well as native congener richness. Native congener richness may represent either biotic resistance via interspecific competition, or trait preadaptation according to Darwin's naturalisation hypothesis. We used generalised linear mixed models to examine evidence supporting the relative roles of abiotic and biotic predictors of cyprinid introduction success. Native congener richness was positively correlated with nonindigenous cyprinid richness and was the most important variable predicting nonindigenous cyprinid richness. Mean elevation had a weak positive effect, and effects of other abiotic factors were insignificant and less important. Our results suggest that at this spatial scale, trait preadaptation may be more important than intrageneric competition for determining richness of nonindigenous fishes.

Different Histories, Different Destinies‒Impact of Evolutionary History and Population Genetic Structure on Extinction Risk of the Adriatic Spined Loaches (Genus Cobitis; Cypriniformes, Actinopterygii.

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Ivana Buj

Full Text Available The region of Balkans is often considered as an ichthyologic "hot spot", with a great number of species and high portion of endemics living in fresh waters in a relatively small area. The Adriatic watershed in Croatia and Herzegovina is inhabited by six spined loach species (genus Cobitis whose extinction risk estimations were based solely on their extent of occurrence (and/or area of occupancy and its fragmentation, and conservation proposals do not consider diversity below species level. In this investigation we employed molecular genetic methods to describe present genetic structure of the Adriatic spined loaches and reveal their demographic history. The divergence of the Adriatic lineages inside the genus Cobitis started in Miocene and lasted until Pleistocene epoch. Geological events responsible for shaping recent diversity of spined loaches in the Adriatic basin are: the Dinarid Mountains upwelling, the evolution of Dinaric Lake system, local tectonic activity, river connections during glaciations and differences in sea level. Even though all the investigated species inhabit karstic rivers located in the same geographic area and that were subject of similar geological events, the results obtained reveal great differences in their genetic diversity and structure and point out the necessity of different conservation measures to ensure their future viability. High level of genetic polymorphism is characteristic for species located more to the south. Two species comprised of more than one population have completely different intraspecific structure; populations of C. illyrica are genetically distinct and represent separate evolutionary significant units, whereas intraspecific structure of C. narentana corresponds to metapopulational pattern. Without population genetic data, evolutionary significant units could be easily misidentified. Furthermore, the obtained results affirm that population genetic measurements are able to detect differences

The parasite community of round goby Neogobius melanostomus (Pallas, 1814) (Actinopterygii: Gobiidae) newly introduced into the upper Elbe

Czech Academy of Sciences Publication Activity Database

Kvach, Yuriy; Ondračková, Markéta; Janáč, Michal; Jurajda, Pavel

2017-01-01

Roč. 418, April (2017), č. článku 19. ISSN 1961-9502 R&D Projects: GA ČR(CZ) GBP505/12/G112 Institutional support: RVO:68081766 Keywords : enemy release hypothesis * Neogobius melanostomus * North Sea basin * parasite spillback * Pomphorhynchus tereticollis Subject RIV: EG - Zoology OBOR OECD: Marine biology, freshwater biology, limnology Impact factor: 1.217, year: 2016

Activity, habitat use, feeding behavior, and diet of four sympatric species of Serranidae (Actinopterygii: Perciformes in southeastern Brazil

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Fernando Zaniolo Gibran

Full Text Available Diplectrum formosum (the sand perch, Diplectrum radiale (the aquavina, Epinephelus marginatus (the dusky grouper and Mycteroperca acutirostris (the comb grouper are four sympatric serranid of remarkable ecological and commercial importance. This study investigated the feeding of these four species in the São Sebastião Channel, São Paulo State (southeastern Brazil, comparing their diet, habitat utilization and morphological features related to foraging. These four serranids are opportunistic visual predators that use a total of nine different tactics to capture their preys, feed mostly on crustaceans during the day and twilight, and keep stationary and quiescent at night. The ecomorphological study was conducted to test its predictive value to infer lifestyles. It was verified that such analysis should be used carefully and must be complemented by field observations. Although morphologically and behaviorally very similar, D. formosum and D. radiale showed different preferences to the substratum type used by large individuals, which are exclusively sit-and-wait predators. On the other hand, E. marginatus displayed more sedentary habits than M. acutirostris, the most versatile predator from the studied species. The studied species of Diplectrum and E. marginatus can be regarded as benthic serranids, while M. acutirostris could be viewed as a nektobenthic species.

Spatial structure of helminth communities in the golden grey mullet, Liza aurata (Actinopterygii: Mugilidae), from the Western Mediterranean.

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Míguez-Lozano, Raúl; Pardo-Carranza, Trinidad V; Blasco-Costa, Isabel; Balbuena, Juan Antonio

2012-10-01

Ecological investigations regarding the parasite fauna of grey mullets are scarce. The present study provides a detailed description of the helminth communities of Liza aurata in the Spanish western Mediterranean and analyzes the role of spatial, temporal, and host variables in shaping the infracommunities. In total, 204 fish were collected in 2 localities, situated ca. 290 km apart, in spring and fall of 2004 and 2005. A non-metric multidimensional scaling (NMDS) was used to visualize an ordination of the infracommunities according to their relative similarities in parasite abundances. The relationship between infracommunity composition and explanatory variables (host size, locality, year, and season of harvest) was examined by permutational analysis of variance (PERMANOVA) applied to species abundances. Permutational tests for homogeneity of multivariate dispersion were used to test the null hypothesis of no differences in dispersion among groups formed by the factors whose effects were significant in PERMANOVA. A total of 33,241 helminth parasites, belonging to 18 species, was collected, i.e., 12 species of adult digeneans (23% of the parasite specimens), 3 digeneans as metacercariae (68%), 1 acanthocephalan (2.1%), and 2 monogeneans (6.5%). An important part of this helminth fauna is specialized to grey mullets, with a sizable portion of the component community restricted to the Mediterranean and northeast Atlantic. The NMDS ordination indicated high heterogeneity among infrapopulations. However, most differences at both the component and infracommunity level were related to geographic locality. In fact, the PERMANOVA showed that, among the explanatory variables considered, sampling locality accounted for the largest share of variation. The geographical differences observed may be related to local environmental characteristics or to the limited spatial dispersal of the species forming the component community. The latter was supported by the significant portion of variation explained by a 3-way interaction term. Thus, the spatial structure of our helminth infracommunities seems to be determined by a combination of differences in local environmental conditions and the transmission ability of each species at small local and time scales.

Four new species of Ligophorus (Monogenea: Dactylogyridae) parasitic on Mugil liza (Actinopterygii: Mugilidae) from Guandu River, southeastern Brazil.

Science.gov (United States)

Abdallah, Vanessa D; de Azevedo, Rodney K; Luque, José L

2009-08-01

Four species of Ligophorus (Monogenea: Dactylogyridae), i.e., L. tainhae n. sp., L. brasiliensis n. sp., L. guanduensis n. sp., and L. lizae n. sp., are described. The specimens were collected from the gills of Mugil liza (Mugilidae) from the Guandu River (22 degrees 48'32"S, 43 degrees 37'35"W), State of Rio de Janeiro, Brazil, between January 2008 and March 2008. The male copulatory organ of L. tainhae n. sp. differs from the all known species of this genus in having the largest accessory piece, the length of accessory piece exceeding the length of the copulatory organ tube, and the distal tip of the lower lobe crossing the upper lobe. Ligophorus brasiliensis n. sp. and L. guanduensis n. sp. have a similar shape of the accessory piece, but in L. guanduensis n. sp. the lower lobe is larger than the upper lobe (as opposed to L. brasiliensis n. sp.), the ratio between length of upper lobe and the length of the proximal part of the accessory piece before the bifurcation is shorter and the distal tip of the lower lobe extends to the level of the upper lobe (in L. brasiliensis n. sp. the distal tip of lower lobe crossing the upper lobe). In L. lizae n. sp., the terminal bifurcations of the accessory piece are equal in length and unequal in the other 3 new species. Species of Ligophorus are recorded for the first time from Brazil.

Aphanius arakensis, a new species of tooth-carp (Actinopterygii, Cyprinodontidae) from the endorheic Namak Lake basin in Iran

OpenAIRE

Teimori,Azad; Esmaeili,Hamid; Gholami,Zeinab; Zarei,Neda; Reichenbacher,Bettina

2012-01-01

A new species of tooth-carp, Aphanius arakensis sp. n., is described from the Namak Lake basin in Iran. The new species is distinguished by the congeners distributed in Iran by the following combination of characters: 10–12 anal fin rays, 28–32 lateral line scales, 10–13 caudal peduncle scales, 8–10 gill rakers, 12–19, commonly 15–16, clearly defined flank bars in males, a more prominent pigmentation along the flank added by relatively big blotches in the m...

Fish, Actinopterygii, Perciformes, Gobiidae, Amblyeleotris rubrimarginata Mohlmann and Randall, 2002: Range gap filled in northern Borneo

OpenAIRE

Townsend, D.

2010-01-01

The present work reports the shrimp goby Amblyeleotris rubrimarginata Mohlmann and Randall, 2002 in coralsand habitats off three different islands within the Tunku Abdul Rahman marine Park (TARP) off western Sabah in northernBorneo.

SPATIAL STRUCTURE OF HELMINTH COMMUNITIES IN THE GOLDEN GREY MULLET, LIZA AURATA (ACTINOPTERYGII: MUGILIDAE), FROM THE WESTERN MEDITERRANEAN

Czech Academy of Sciences Publication Activity Database

Míguez-Lozano, R.; Pardo-Carranza, T.V.; Blasco-Costa, Maria Isabel; Balbuena, J. A.

2012-01-01

Roč. 98, č. 5 (2012), s. 904-912 ISSN 0022-3395 Institutional support: RVO:60077344 Keywords : 1914 DIGENEA HAPLOPORIDAE * PARASITE SPECIES RICHNESS * N. SP MONOGENEA * MARINE FISHES * ENVIRONMENTAL COMPONENTS * LIGOPHORUS MONOGENEA * SATURNIUS MANTER * BETA DIVERSITY * DISTANCE DECAY * BLACK-SEA Subject RIV: EH - Ecology, Behaviour Impact factor: 1.321, year: 2012 http://www.bioone.org/doi/abs/10.1645/GE-2897.1#fn2

Evolutionary history of the fish genus Astyanax Baird & Girard (1854 (Actinopterygii, Characidae in Mesoamerica reveals multiple morphological homoplasies

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Doadrio Ignacio

2008-12-01

Full Text Available Abstract Background Mesoamerica is one of the world's most complex biogeographical regions, mostly due to its complex geological history. This complexity has led to interesting biogeographical processes that have resulted in the current diversity and distribution of fauna in the region. The fish genus Astyanax represents a useful model to assess biogeographical hypotheses due to it being one of the most diverse and widely distributed freshwater fish species in the New World. We used mitochondrial and nuclear DNA to evaluate phylogenetic relationships within the genus in Mesoamerica, and to develop historical biogeographical hypotheses to explain its current distribution. Results Analysis of the entire mitochondrial cytochrome b (Cytb gene in 208 individuals from 147 localities and of a subset of individuals for three mitochondrial genes (Cytb, 16 S, and COI and a single nuclear gene (RAG1 yielded similar topologies, recovering six major groups with significant phylogeographic structure. Populations from North America and Upper Central America formed a monophyletic group, while Middle Central America showed evidence of rapid radiation with incompletely resolved relationships. Lower Central America lineages showed a fragmented structure, with geographically restricted taxa showing high levels of molecular divergence. All Bramocharax samples grouped with their sympatric Astyanax lineages (in some cases even with allopatric Astyanax populations, with less than 1% divergence between them. These results suggest a homoplasic nature to the trophic specializations associated with Bramocharax ecomorphs, which seem to have arisen independently in different Astyanax lineages. We observed higher taxonomic diversity compared to previous phylogenetic studies of the Astyanax genus. Colonization of Mesoamerica by Astyanax before the final closure of the Isthmus of Panama (3.3 Mya explains the deep level of divergence detected in Lower Central America. The colonization of Upper Mesoamerica apparently occurred by two independent routes, with lineage turnover over a large part of the region. Conclusion Our results support multiple, independent origins of morphological traits in Astyanax, whereby the morphotype associated with Bramocharax represents a recurrent trophic adaptation. Molecular clock estimates indicate that Astyanax was present in Mesoamerica during the Miocene (~8 Mya, which implies the existence of an incipient land-bridge connecting South America and Central America before the final closure of the Isthmus of Panama (~3.3 Mya.

Variation in male reproductive traits among three bitterling fishes (Acheilognathinae: Cyprinidae) in relation to the mating system

Czech Academy of Sciences Publication Activity Database

Pateman-Jones, C.; Rasotto, M. B.; Reichard, Martin; Liao, C.; Liu, H.; Zieba, G.; Smith, C.

2011-01-01

Roč. 103, č. 3 (2011), s. 622-632 ISSN 0024-4066 Institutional research plan: CEZ:AV0Z60930519 Keywords : reproduction * sperm competition * sperm depletion * sperm economy Subject RIV: EG - Zoology Impact factor: 2.193, year: 2011

Reproductive strategies of two sympatric 'small barbs'(Barbus humilis and B. tanapelagius, Cyprinidae)in Lake Tana, Ethiopia

NARCIS (Netherlands)

Dejen, E.; Sibbing, F.A.; Vijverberg, J.

2003-01-01

The reproductive strategies of two species of 'small barbs' (12,000 fish). Both species have a long breeding period (from March to September), and the distinct bimodal size-frequency distributions of eggs suggest multiple spawning for both species. Absolute fecundity increased exponentially with

Occurrence of the Kessler’s gudgeon Romanogobio kesslerii (Dybowski, 1862) (Cyprinidae) in the Upper Vistula River (Poland)

Czech Academy of Sciences Publication Activity Database

Nowak, M.; Klaczak, A.; Szczerbik, P.; Mendel, Jan; Popek, W.

2014-01-01

Roč. 30, č. 5 (2014), s. 1062-1064 ISSN 0175-8659 R&D Projects: GA ČR GP206/09/P608 Institutional support: RVO:68081766 Keywords : Kessler's gudgeon * Upper Vistula River Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 0.867, year: 2014

The role of the European bitterling (Rhodeus amarus, Cyprinidae) in parasite accumulation and transmission in riverine ecosystems

Czech Academy of Sciences Publication Activity Database

Dávidová, M.; Blažek, Radim; Trichkova, T.; Koutrakis, E.; Gaygusuz, Ö.; Ercan, E.; Ondračková, Markéta

2011-01-01

Roč. 45, č. 3 (2011), s. 377-387 ISSN 1386-2588 R&D Projects: GA AV ČR KJB600930802; GA MŠk LC522 Institutional research plan: CEZ:AV0Z60930519 Keywords : European bitterling * Freshwater habitat * Metazoan parasites * Parasite transmission * Intermediate host Subject RIV: EH - Ecology, Behaviour Impact factor: 1.365, year: 2011

Dynamics of Rex3 in the genomes of endangered Iberian Leuciscinae (Teleostei, Cyprinidae) and their natural hybrids

Czech Academy of Sciences Publication Activity Database

Pereira, C. S.; Pazian, M. F.; Ráb, Petr; Collares-Pereira, M. J.

2015-01-01

Roč. 8, č. 81 (2015) ISSN 1755-8166 Institutional support: RVO:67985904 Keywords : Anaecypris hispanica * Chondrostoma s.l. sp * Karyotype differentiation Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.506, year: 2015

A multilocus assessment of nuclear and mitochondrial sequence data elucidates phylogenetic relationships among European spirlins (Alburnoides, Cyprinidae)

Czech Academy of Sciences Publication Activity Database

Stierandová, Soňa; Vukic, J.; Vasil'eva, E. D.; Zogaris, S.; Shumka, S.; Halačka, Karel; Vetešník, Lukáš; Švátora, M.; Nowak, M.; Stefanov, T.; Koščo, J.; Mendel, Jan

2016-01-01

Roč. 94, January (2016), s. 479-491 ISSN 1055-7903 Grant - others:GA AV ČR(CZ) M200930901 Institutional support: RVO:68081766 Keywords : Alburnoides * Taxonomy * Phylogeography * Mitochondrial and nuclear markers Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 4.419, year: 2016

Complete mitochondrial genome of threatened mahseer Tor tor (Hamilton 1822) and its phylogenetic relationship within Cyprinidae family.

Science.gov (United States)

Pavan-Kumar, A; Raman, Sudhanshu; Koringa, Prakash G; Patel, Namrata; Shah, Tejas; Singh, Rajeev K; Krishna, Gopal; Joshi, C G; Gireesh-Babu, P; Chaudhari, Aparna

2016-12-01

The mahseers (Tor, Neolissochilus and Naziritor) are an important group of fishes endemic to Asia with the conservation status of most species evaluated as threatened. Conservation plans to revive these declining wild populations are hindered by unstable taxonomy. Molecular phylogeny studies with mitochondrial genome have been successfully used to reconstruct the phylogenetic tree and to resolve taxonomic ambiguity. In the present study, complete mitochondrial genome of Tor tor has been sequenced using ion torrent next-generation sequencing platform with coverage of more than 1000 x. Comparative mitogenome analysis shows higher divergence value at ND1 gene than COI gene. Further, occurrence of a distinct genetic lineage of T. tor is revealed. The phylogenetic relationship among mahseer group has been defined as Neolissochilus hexagonolepis ((T. sinensis (T. putitora, T. tor), (T. khudree, T. tambroides)).

A new species of the genus Achondrostoma Robalo, Almada, Levy & Doadrio, 2007 (Actynopterigii, Cyprinidae from western Spain

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Doadrio, I.

2007-12-01

Full Text Available A new freshwater fish species, Achondrostoma salmantinum, formerly considered as one population of Iberochondrostoma lemmingii, is described on the basis of genetic and morphological characters. The new species inhabits the rivers Huebra, Águeda and Uces and tributaries in the Duero River basin in Salamanca province, western Spain. The species is distinguished from Iberochondrostoma lemmingii and from other species of the genus Achondrostoma according to morphometric, meristic and genetic characters such as a narrow caudal peduncle, long postorbital and head lengths, small number of scales (9-10/44-53/4-6, small number of gill rakers (15-22, usually 5-5 pharyngeal teeth, four diagnostic isozyme loci (IDHP-2*, IDHP-3*, MDH-B* and PEP* and one unique allele (MDH-A*95. The distribution of I. lemmingii is currently known to be restricted to the Tajo, Guadiana, Odiel and Guadalquivir basins. This new cyprinid is considered Endangered (EN according to IUCN Red List Categories.

Se describe una nueva especie de pez de agua dulce, Achondrostoma salmantinum, anteriormente considerada como una población de Iberochondrostoma lemmingii, a partir de caracteres genéticos y morfológicos. La nueva especie vive en la cuenca del río Duero en los ríos Uces, Huebra y Águeda y sus afluentes en la provincia de Salamanca en el oeste de España. De acuerdo con los caracteres morfométricos y genéticos la especie se distingue de Iberochondrostoma lemmingii y de otras especies del género Achondrostoma por un pedúnculo caudal estrecho, larga longitud de la cabeza y de la distancia postorbital, pequeño número de escamas (9/10/44-53/4-6, pequeño número de branquispinas (15-22, frecuentemente 5-5 dientes faríngeos, cuatro loci isozimáticos diagnósticos (IDHP-2*, IDHP-3*, MDH-B* y PEP* y un único alelo (MDH-A*95. La distribución de I. lemmingii se restringe ahora a las cuencas de los ríos Tajo, Guadiana, Odiel y Guadalquivir. Este nuevo ciprínido es considerado En Peligro (EN de acuerdo a las categorías de la Lista Roja de la UICN.

Histological damage and inflammatory response elicited by Monobothrium wageneri (Cestoda in the intestine of Tinca tinca (Cyprinidae

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Sayyaf Dezfuli Bahram

2011-12-01

Full Text Available Abstract Background Among the European cyprinids, tench, Tinca tinca (L., and the pathological effects their cestodes may effect, have received very little or no attention. Most literature relating to Monobothrium wageneri Nybelin, 1922, a common intestinal cestode of tench, for example, has focused on aspects of its morphology rather than on aspects of the host-parasite interaction. Results Immunopathological and ultrastructural studies were conducted on the intestines of 28 tench, collected from Lake Piediluco, of which 16 specimens harboured tight clusters of numerous M. wageneri attached to the intestinal wall. The infection was associated with the degeneration of the mucosal layer and the formation of raised inflammatory swelling surrounding the worms. At the site of infection, the number of granulocytes in the intestine of T. tinca was significantly higher than the number determined 1 cm away from the site of infection or the number found in uninfected fish. Using transmission electron microscopy, mast cells and neutrophils were frequently observed in close proximity to, and inside, the intestinal capillaries; often these cells were in contact with the cestode tegument. At the host-parasite interface, no secretion from the parasite's tegument was observed. Intense degranulation of the mast cells was seen within the submucosa and lamina muscularis, most noticeably at sites close to the tegument of the scolex. In some instances, rodlet cells were encountered in the submucosa. In histological sections, hyperplasia of the mucous cells, notably those giving an alcian blue positive reaction, were evident in the intestinal tissues close to the swelling surrounding the worms. Enhanced mucus secretion was recorded in the intestines of infected tench. Conclusions The pathological changes and the inflammatory cellular response induced by the caryophyllidean monozoic tapeworm M. wageneri within the intestinal tract of an Italian population of wild tench is reported for the first time.

Changes in the fish community of the Kpong Headpond, lower Volta River, Ghana after 25 years of impoundment

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Theodore Quarcoopome

2011-12-01

Full Text Available The Kpong Headpond was the second created on the Volta River after Akosombo Dam, primarily as a source of hydroelectric power generation and potable water supply, and additionally, it has supported some fish production in Ghana since impoundment. The changes in fish community of the Kpong Headpond were studied to provide baseline information for strategies formulation to support the socio-economic development of the reservoir. The study identified changes in the fish community of the reservoir by comparing occurrence, composition, relative abundance and relative importance estimates of fish species, families and trophic groups, from available previous studies in the reservoir. From the collated information all fishes identified in the reservoir were categorised based on occurrence and importance as disappeared, appeared, permanent, declined or important, to show current status. The results indicated that the fish community has experienced a shift in the composition and relative abundance of important species, families and trophic groups in terms of number and weight, while remaining ecologically balanced. Representatives of the families Osteoglossidae, Centropomidae and Characidae have declined while representatives of the families Claroteidae, Cyprinidae and Cichlidae have increased. The aufwuch-detritus and herbivores declined while semi-pelagic omnivores increased resulting in a shift in dominance to benthic and semi pelagic omnivores. The appearance of five species and the disappearance of 25 others indicated a dynamic restructuring of the fish community in the reservoir, as expected. Enforcement of fishing regulations including the use of appropriate gear and fishing methods, fishery access control, promotion of culture-based fisheries and improvement in fisher education are recommended topics for sustainable fisheries in the reservoir. Rev. Biol. Trop. 59 (4: 1685-1696. Epub 2011 December 01.La laguna Kpong se convirtió en la segunda

Environmental influences on distribution of four Sciaenidae species (Actinopterygii, Perciformes in a tropical bay at Southeastern Brazil Influências ambientais na distribuição de quatro espécies de Sciaenidae (Actinopterygii, Perciformes numa baía tropical do sudeste do Brasil

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Francisco G. Araújo

2006-06-01

Full Text Available We sampled fish and measured environmental variables in the Sepetiba Bay, a tropical embayment at Southeastern Brazil. The aim was to assess environmental influences on distribution of four abundant species of Sciaenidae Micropogonias furnieri (Desmarest, 1823, Ctenosciaena gracilicirrhus (Metzelaar, 1919, Cynoscion leiarchus (Cuvier, 1830 and Menticirrhus americanus (Linnaeus, 1758 to test the habitat partition hypothesis. Samples were taken between June 1993 and July 1996, at three bay zones (outer, central and inner. Depth was the most important environmental variable to influence fish distribution, followed by transparency. M. furnieri showed significant negative correlation to depth, transparency and salinity, while C. gracilicirrhus showed the opposite situation. The highest densities of C. leiarchus occurred in the lowest temperature, while M. americanus did not showed preferences for any of the examined environmental variables. Spatial separation, mainly between M. furnieri and C. gracilicirrhus, seems to be the strategy developed to coexist in the Sepetiba Bay, with M. furnieri being more adapted to copy with harsh environmental conditions of the inner bay. The other three species, which use mostly the outer bay zone, seem to be restricted to more stable conditions, where influences from oceanic waters are more intense.Foram coletados peixes e medidas as variáveis ambientais na Baía de Sepetiba, uma baía tropical do Sudeste do Brasil. O objetivo foi determinar influências ambientais na distribuição de quatro espécies abundantes de Sciaenidae Micropogonias furnieri (Desmarest, 1823, Ctenosciaena gracilicirrhus (Metzelaar,1919, Cynoscion leiarchus (Cuvier,1830 and Menticirrhus americanus (Linnaeus, 1758 para testar a hipótese de partição do hábitat. Amostragens foram feitas entre Junho de 1993 e Julho de 1996 em três zonas da baía (externa, central e interna. A profundidade foi a mais importante variável ambiental que influenciou a distribuição dos peixes, seguida pela transparência. M. furnieri mostrou uma correlação negativa significante em relação à profundidade, transparência e salinidade, enquanto C. gracilicirrhus evidenciou uma situação oposta. As maiores densidades de C. leiarchus ocorreram nas menores temperaturas, enquanto M. americanus não parece ter preferências por nenhuma das variáveis ambientais examinadas. A separação espacial, principalmente entre M. furnieri e C. gracilicirrhus, parece ser uma estratégia desenvolvida para coexistirem na Baía de Sepetiba, com M. furnieri sendo mais adaptada para suportar as condições ambientais mais difíceis da zona interna. As outras três espécies, que utilizam mais a zona externa, parecem ser restritas às mais estáveis condições, onde influências das águas oceânicas são mais intensas.

An update on MyoD evolution in teleosts and a proposed consensus nomenclature to accommodate the tetraploidization of different vertebrate genomes.

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Daniel J Macqueen

Full Text Available BACKGROUND: MyoD is a muscle specific transcription factor that is essential for vertebrate myogenesis. In several teleost species, including representatives of the Salmonidae and Acanthopterygii, but not zebrafish, two or more MyoD paralogues are conserved that are thought to have arisen from distinct, possibly lineage-specific duplication events. Additionally, two MyoD paralogues have been characterised in the allotetraploid frog, Xenopus laevis. This has lead to a confusing nomenclature since MyoD paralogues have been named outside of an appropriate phylogenetic framework. METHODS AND PRINCIPAL FINDINGS: Here we initially show that directly depicting the evolutionary relationships of teleost MyoD orthologues and paralogues is hindered by the asymmetric evolutionary rate of Acanthopterygian MyoD2 relative to other MyoD proteins. Thus our aim was to confidently position the event from which teleost paralogues arose in different lineages by a comparative investigation of genes neighbouring myod across the vertebrates. To this end, we show that genes on the single myod-containing chromosome of mammals and birds are retained in both zebrafish and Acanthopterygian teleosts in a striking pattern of double conserved synteny. Further, phylogenetic reconstruction of these neighbouring genes using Bayesian and maximum likelihood methods supported a common origin for teleost paralogues following the split of the Actinopterygii and Sarcopterygii. CONCLUSION: Our results strongly suggest that myod was duplicated during the basal teleost whole genome duplication event, but was subsequently lost in the Ostariophysi (zebrafish and Protacanthopterygii lineages. We propose a sensible consensus nomenclature for vertebrate myod genes that accommodates polyploidization events in teleost and tetrapod lineages and is justified from a phylogenetic perspective.

Elemental detection in muscle of flatfish Achirus Iineatus and Trinectes paulistanus (Actinopterygii, Pleuronectiformes) from Santos Bay, Southeastern Brazilian coast

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Rocha, Maria Luiza Chiste Flaquer da; Dias, June Ferraz; Dias, Johnny Ferraz

2013-01-01

Full text: Studies on the presence of elements, including metals, in organisms can prevent both degradation of aquatic systems and the bioaccumulation of elements especially those that offer risk to human health. The aim of this study was to investigate the presence elements in the muscle of two species of flatfish, Achirus Iineatus and Trinectes paulistanus (Achiridae, Pleuronectiformes), using Particle Induced X-Ray Emission (PIXE). This technique is considered one of the most sensitive for detecting trace metals in biomaterials. These flatfish specimens are considered residents in Santos Bay, central coast of Sao Paulo state, and they were caught monthly throughout the year 2005 and sorted by size and maturity stage as juveniles and adults. The two species have no spatial overlap and this allows a mapping of the Santos Bay for the presence of bioavailable metals and other elements. Sampling was done in six distinct points in the Bay, under different antropic influences: two along the beaches, one in the vicinity of the out fall diffuser and three along the entrance of the bay. Results from 54 samples of muscle allowed detect the following elements: aluminium (AI), arsenic (As), lead (Pb), copper (Cu), chromium (Cr), iron (Fe), strontium (Sr), manganese (Mn), mercury (Hg), nickel (Ni), selenium (Se) and zinc (Zn). There were no correlation with the levels of sediment contamination for most metals analyzed in muscles, with the exception of copper and also no clear pattern of differential level of metals between young and adult specimens of A. Iineatus and T. paulistanus. According to the maximum tolerance values of the Brazilian National Health Surveillance Agency (Agencia Nacional de Vigilancia Sanitaria -ANVISA), fish muscle presented levels of contamination above the permitted for human consumption, mainly for some elements: mercury, in samples from the internal area; arsenic, in samples from west side and selenium, in samples from east side of the bay. (author)

Elemental detection in muscle of flatfish Achirus Iineatus and Trinectes paulistanus (Actinopterygii, Pleuronectiformes) from Santos Bay, Southeastern Brazilian coast

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Rocha, Maria Luiza Chiste Flaquer da; Dias, June Ferraz [Universidade de Sao Paulo (USP), Sao Paulo, SP (Brazil). Instituto Oceanografico. Laboratorio de Ecologia Reprodutiva e do Recrutamento de Organismos Marinhos; Dias, Johnny Ferraz [Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, ES (Brazil). Instituto de Fisica. Laboratorio de Implantacao Ionica

2013-07-01

Full text: Studies on the presence of elements, including metals, in organisms can prevent both degradation of aquatic systems and the bioaccumulation of elements especially those that offer risk to human health. The aim of this study was to investigate the presence elements in the muscle of two species of flatfish, Achirus Iineatus and Trinectes paulistanus (Achiridae, Pleuronectiformes), using Particle Induced X-Ray Emission (PIXE). This technique is considered one of the most sensitive for detecting trace metals in biomaterials. These flatfish specimens are considered residents in Santos Bay, central coast of Sao Paulo state, and they were caught monthly throughout the year 2005 and sorted by size and maturity stage as juveniles and adults. The two species have no spatial overlap and this allows a mapping of the Santos Bay for the presence of bioavailable metals and other elements. Sampling was done in six distinct points in the Bay, under different antropic influences: two along the beaches, one in the vicinity of the out fall diffuser and three along the entrance of the bay. Results from 54 samples of muscle allowed detect the following elements: aluminium (AI), arsenic (As), lead (Pb), copper (Cu), chromium (Cr), iron (Fe), strontium (Sr), manganese (Mn), mercury (Hg), nickel (Ni), selenium (Se) and zinc (Zn). There were no correlation with the levels of sediment contamination for most metals analyzed in muscles, with the exception of copper and also no clear pattern of differential level of metals between young and adult specimens of A. Iineatus and T. paulistanus. According to the maximum tolerance values of the Brazilian National Health Surveillance Agency (Agencia Nacional de Vigilancia Sanitaria -ANVISA), fish muscle presented levels of contamination above the permitted for human consumption, mainly for some elements: mercury, in samples from the internal area; arsenic, in samples from west side and selenium, in samples from east side of the bay. (author)

Pelagic occurrence and diet of invasive round goby Neogobius melanostomus (Actinopterygii, Gobiidae) juveniles in deep well-mixed European reservoirs.

Czech Academy of Sciences Publication Activity Database

Jůza, Tomáš; Zemanová, Jana; Tušer, Michal; Sajdlová, Zuzana; Baran, Roman; Vašek, Mojmír; Ricard, Daniel; Blabolil, Petr; Wagenvoort, A. J.; Ketelaars, H. A. M.; Kubečka, Jan

2016-01-01

Roč. 768, č. 1 (2016), s. 197-209 ISSN 0018-8158 R&D Projects: GA MŠk(CZ) EE2.3.20.0204; GA MŠk(CZ) EE2.3.30.0032 Institutional support: RVO:60077344 Keywords : Biesbosch reservoirs * fish community composition changes * invasive species * vertical distribution * length distribution * fry trawling Subject RIV: EH - Ecology, Behaviour Impact factor: 2.056, year: 2016

Population structure, condition, and reproduction characteristics of native monkey goby, Neogobius fluviatilis (Actinopterygii: Perciformes Gobiidae), in the Bulgarian Danube

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Konečná, Markéta; Jurajda, Pavel

2012-01-01

Roč. 42, č. 4 (2012), s. 321-327 ISSN 0137-1592 R&D Projects: GA ČR(CZ) GAP505/11/1768 Institutional support: RVO:68081766 Keywords : monkey goby * invasion * Bulgaria * Danube, condition * GSI * ovary structure Subject RIV: EH - Ecology, Behaviour Impact factor: 0.606, year: 2012

The influence of magnetic field on the spatial orientation in zebrafish Danio rerio (Hamilton and roach Rutilus rutilus (L.

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Anastasia A. Batrakova

2015-11-01

Full Text Available Known, that some teleostei can perceive the geomagnetic field (GMF. However, the information about magnetosensitivity in Cyprinidae fish from artificial and natural habitats is obscure. We have registered preferred directions in Danio rerio (Hamilton from aquaria-cultivated line exposed to the natural GMF, 180 degrees reversal of horizontal GMF component, 180 degrees reversal of vertical GMF component, 180 degrees reversal of both vertical and horizontal GMF components and 90 degrees clockwise turn of horizontal GMF component. We also registered the preferred directions in Rutilus rutilus (L. from Rybinsk reservoir exposed to the natural GMF and 90 degrees clockwise turn of horizontal GMF component. It was found that zebrafish prefer two opposite directions towards east and west in the natural GMF. When the horizontal component of GMF was turned 90 degrees clockwise D. rerio prefer two opposite directions towards north and south. The possible reason of bimodality in zebrafish’s preferred directions distributions is discussed. The only direction towards east-north-east observed in roach under the natural GMF. This direction coincided with the way from the place of capture to the streamflow part of Rybinsk reservoir. And it was changed by south-south-east direction when turned the horizontal component of GMF 90 degrees clockwise. The possible reason of the choosing directions by fish with GMF is discussed.

Potential of zebrafish as a model for exploring the role of the amygdala in emotional memory and motivational behavior.

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Perathoner, Simon; Cordero-Maldonado, Maria Lorena; Crawford, Alexander D

2016-06-01

Emotion is a key aspect of behavior, enabling humans and animals to assign either positive or negative values to sensory inputs and thereby to make appropriate decisions. Classical experiments in mammalian models, mainly in primates and rodents, have shown that the amygdala is essential for appetitive and aversive associative processing and that dysfunction of this brain region leads to various psychiatric conditions, including depression, generalized anxiety disorder, panic disorder, phobias, autism, and posttraumatic stress disorder. In the past 2 decades, the zebrafish (Danio rerio; Cyprinidae) has emerged as a versatile, reliable vertebrate model organism for the in vivo study of development, gene function, and numerous aspects of human pathologies. Small size, high fecundity, rapid external development, transparency, genetic tractability, and high genetic and physiologic homology with humans are among the factors that have contributed to the success with this small fish in different biomedical research areas. Recent findings indicate that, despite the anatomical differences in the brain structure of teleosts and tetrapods, fish possess a structure homologous to the mammalian amygdala, a hypothesis that is supported by the expression of molecular markers, analyses of neuronal projections in different brain areas, and behavioral studies. This Review summarizes this evidence and highlights a number of relevant bioassays in zebrafish to study emotional memory and motivational behavior. © 2016 Wiley Periodicals, Inc.

Correlates of elemental-isotopic composition of stream fishes: the importance of land-use, species identity and body size.

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Montaña, C G; Schalk, C M

2018-04-01

The isotopic (δ 13 C and δ 15 N) and stoichiometric (C:N:P) compositions of four fish species (Family Centrarchidae: Lepomis auritus, Lepomis cyanellus; Family Cyprinidae: Nocomis leptocephalus, Semotilus atromaculatus) were examined across four North Carolina Piedmont streams arrayed along an urbanization gradient. Both isotopic and stoichiometric composition of fishes appeared to track changes occurring in basal resource availability. Values of δ 13 C of basal resources and consumers were more enriched at the most urbanized streams. Similarly, basal resources and consumers were δ 15 N-enriched at more urbanized streams. Basal resource stoichiometry varied across streams, with periphyton being the most variable. Primary consumers stoichiometry also differed across streams. Intraspecific variation in fish stoichiometry correlated with the degree of urbanization, as the two cyprinids had higher N content and L. cyanellus had higher P content in more urbanized streams, probably due to enrichment of basal resources. Intrinsic factors, specifically species identity and body size also affected stoichiometric variation. Phosphorus (P) content increased significantly with body size in centrarchids, but not in cyprinids. These results suggest that although species identity and body size are important predictors of elemental stoichiometry, the complex nature of altered urban streams may yield imbalances in the elemental composition of consumers via their food resources. © 2018 The Fisheries Society of the British Isles.

Population Aspects of Fishes in Geba and Sor Rivers, White Nile System in Ethiopia, East Africa

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Simagegnew Melaku

2017-01-01

Full Text Available This study was carried out to assess the diversity, condition factor, length-weight relationship, and sex ratio of fishes in Geba and Sor Rivers located in Baro-Akobo Basin, White Nile system within Ethiopia. Fish samples were collected in one wet and one dry season. The length-weight relationships were fitted using power equation for the most abundant species. A total of 348 fish specimens were collected using gillnets and hooks. These were identified into eight species and one Garra sp. representing seven genera and four families. Family Cyprinidae was the most dominant with six species (66.7%. Labeobarbus intermedius, Labeobarbus nedgia, and Labeo cylindricus were the most abundant fish species, respectively, with 60.72%, 16.83%, and 14.66% index of relative importance (IRI. The diversity index was higher for Geba River (H′ = 1.50 than for Sor River (H′ = 1.10. All the three most abundant species had negative allometric growth. Seasonal variations in the mean Fulton condition factor (FCF were statistically significant for L. cylindricus (p<0.05. There was variation in the sex ratio with the females dominating in all the three most abundant species. Further investigation into the fish diversity, food, feeding, and reproductive behaviors of fish species especially in the tributaries of these rivers and their socioeconomic aspects is recommended.

KEANEKARAGAMAN JENIS IKAN DI SUNGAI BATANG GADIS MANDAILING NATAL SUMATERA UTARA

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Yusni Atifah

2017-12-01

Full Text Available Batang Gadis River, located in Mandailing Natal, faces a severe threat by the increase of human activities along the river. The fish community, as well as other biotas, is exposed to reducing environmental condition. Therefore, the study of fish community in this river is essential to get the most recent condition as a baseline data. The purpose of this research was to determine the species diversity of fish in Batang Gadis River of Mandailing Natal. This research used a descriptive exploratory method by surveying with purposive sampling method to collect samples at four specified stations. This study used a fishing net with a zig-zag pattern of sampling covered the river bank for about 200–300m at each observation station. The collected fish samples were identified at the Biology Laboratory of the University of Muhammadiyah Tapanuli Selatan. This study found ten species of fish from five families. The family with the most significant members was Cyprinidae (6 species, and the other families, Bagridae, Clariidae, Nemachelidae, and Loricariidae, were found with only one species. The species diversity comprised of Rasbora lateristriata, Nemacheilus fasciatus, Mystacoleucus marginatus, Tor tambra, Cyprinus carpio, Clarias bathracus, Rasbora argyrotaenia , Barbonymus gonionotus, Puntius binotatus, Bagrus nemurus, and Pterygoplichthys pardalis. The fish population of Batang Gadis River has diversity index (H’ of 1.77 and similarity index (E of 0.77.

The influence of environmental abiotic factors on the qualitative and quantitative structure of ichthyofauna from predeltaic Danube area

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Petronela Georgiana Calin Sandu

2013-05-01

Full Text Available The aim of the paper  is to analyse the influence of environmental factors on the capture and fish communities structure from Danube, between Siret River and Prut River mouth. Fish were collected from April to December 2012 in four fishing areas. During the year, 4910 kg, respectively 7121 fish of 31 species were collected. Cyprinidae, the dominant family, 54.84% in term of number of species, was represented by 17 species (Cyprinus carpio, Carassius gibelio, Barbus barbus, Abramis brama, Abramis sapa, Blicca bjoerkna, Leuciscus idus, Vimba vimba, Aspius aspius, Pelecus cultratus, Chondrostoma nasus, Ctenopharingodon idella, Hypophthalmichthys molitrix, Hypophthalmichthys nobilis, Scardinius erythrophthalmus, Rutilus rutilus, Alburnus alburnus. Other families had the following structure: Percidae (16.13% with 5 species (Sander lucioperca, Zingel zingel, Zingel streber, Perca fluviatilis, Gymnocephalus schraetzer, Acipenseridae (12.90% with 4 species (Huso huso, Acipenser stellatus, Acipenser ruthenus, Acipenser gueldenstaedtii, Clupeidae (6.45% with two species (Alosa immaculata, Alosa tanaica, Siluridae (3.23% with one species (Silurus glanis, Esocidae (3.23% with one species (Esox lucius  and Salmonidae (3.23% with one species also (Salmo labrax. The highest capture was 2977.93 kg (60.65%, during the spring season (April-May, followed by autumn season (September–November, with 992.39 kg (20.21%. The water level and water flow showed high correlation with both number and total catch, respectively.

THE QUALITY OF WATER AND ICHTHIOFAUNA OF THE SOUTHERN LAKE IN OSIJEK – THE CONDITIONS FOR BIOMANIPULATION

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Melita Mihaljević

1996-09-01

Full Text Available The Southern lake is shallow (deep up to 4 meters artificial lake with the ackerage of 6. 25. It is situated within the city of Osijek. Its reconstruction began in 1995, after it has been polluted for many years. The results of, hydrobiological examination show the basic ecological characteristics of the Southern lake: high transparency, great quantity of nutrients and highly developed macrophit vegetation. After the conducted analysis of the qualitative composition of the ichthiofauna, it has been found that the lake has 13 species of fish form six families, with the greatest number of them coming from Cyprinidae family. idae family. The fish species that outnumbers all other in the quantitative composition of the ichtiofauna is P. parua, but also well represented are L. gibosus, C. carrasius gibelio, Scardinius erythrophthalmus and Rutilus rutilus. In the trophic structure, the ratio of the predatory species is disadvantageous in relation to the unpredatory species. The application of the biomanipulation method has been suggested for the further reconstruction of the Southern lake: the quantity of the macrophit vegetation should be reduced by the way of its direct removal and the input of the herbivore fish species. The disadvantageous trophic ratio should be changed by overfishing of predatory species within the ichthiofauna and the input of unpredatory fish species.

Distribution of Phoxinus eos, Phoxinus neogaeus, and their asexually-reproducing hybrids (Pisces: Cyprinidae in Algonquin Provincial Park, Ontario.

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Jonathan A Mee

Full Text Available Hybrid Phoxinus are one of the few asexually reproducing vertebrates species. The distribution of hybrid Phoxinus among lakes in Algonquin Park, Ontario, was evaluated relative to the distribution of parental species and relative to physiochemical lake characteristics. No association between the distribution of hybrids and the distribution of parental species was found, suggesting that the hybrids can successfully coexist with either parental species. In addition, we found no association between hybrid distribution and the physiochemical characteristics of lakes, suggesting that the hybrids are generalists with respect to the ecological niches available in Algonquin Park. There was a difference between the physiochemical characteristics of lakes with and without the parental species P. neogaeus. The lakes containing P. neogaeus were lower elevation than the lakes containing the other parental species, P. eos. The difference in distribution between the parental species may therefore be due to different dispersal abilities, to later arrival following post-glacial dispersal, or to differences in ecology. These results suggest that asexual reproduction is a successful strategy for hybrid Phoxinus in Algonquin Park because these sperm-dependent asexual hybrids are able to survive and persist regardless of which parental species is present, and regardless of the physiochemical characteristics of their habitat.

Comparative cytogenetics of two endangered leuciscine fish, Squalius aradensis and S. torgalensis (Teleostei, Cyprinidae, from the Iberian Peninsula

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Catarina Nabais

2013-03-01

Full Text Available In this study, the description of the karyotypes of the endangered chubs Squalius aradensis (Coelho, Bogutskaya, Rodrigues and Collares-Pereira, 1998 and Squalius torgalensis (Coelho, Bogutskaya, Rodrigues and Collares-Pereira, 1998 is presented by means of conventional (Giemsa-staining, Chromomycin A3 (CMA3-fluorescence, Silver-impregnation (Ag-NORs and molecular (fluorescence in situ hybridization (FISH with 18S rDNA probe protocols. These endemic sister-species have an allopatric but adjacent distribution in the most southwestern part of the Iberian Peninsula. Diploid chromosome number was invariably 2n = 50 and karyotypes of both species were grossly similar, composed of metacentric and submetacentric elements with a reduced number of acrocentric pairs. Sequential staining using FISH with an 18S rDNA probe, CMA3 and Ag-NORs treatments revealed consistent positive signals located at the end of the short arms of a submetacentric chromosome pair, likely homologous in both species. While providing useful cytogenetic comparative data against other members of the genus Squalius Bonaparte, 1837, the work aimed to draw attention towards the conservation of two narrow-range and highly confined fish species.

História natural dos amborés e peixes-macaco (Actinopterygii, Blennioidei, Gobioidei do Parque Nacional Marinho do Arquipélago de Fernando de Noronha, sob um enfoque comportamental Natural history focus blennies and gobis behaviour (Actinopterygii, Blennioidei, Gobioidei from Fernando de Noronha Archipelago

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Liana de F. Mendes

2006-09-01

Full Text Available Os amborês e peixes-macaco, como são popularmente conhecidos gobiídeos e bleniídeos, são elementos dominantes da fauna de pequenos peixes bentônicos e litorâneos que habitam recifes tropicais, compondo grande parte da alta diversidade das espécies de pequeno porte encontrada no Atlântico ocidental. O estudo da distribuição e história natural dos gobióides e blenióides de Fernando de Noronha foi desenvolvido através de observações de campo. Além da descrição dos hábitats preferenciais foram abordados aspectos sociais tais como, habitat preferencial, interações intra- e interespecíficas, comportamento domiciliar e territorial, e comportamento reprodutivo. A maioria das espécies em foco apresenta distribuição principalmente litorânea, são gregárias, com áreas domiciliares relativamente pequenas em torno de 2 x 2 m², pouco agressivas, tendo sido ocasionalmente registradas curtas perseguições intra- e interespecíficas. A baixa agressividade registrada, em comparação com outros peixes é provavelmente associada à adaptação à ocupação de pequenas áreas, como é o caso das poças de marés, pois um grande número de interações agressivas representaria um gasto de energia desnecessário. No geral, as espécies possuem coloração críptica, associada à evitação de predadores. Apenas nestas épocas de reprodução foi observada a intensificação da agressividade, com comportamento territorial - defesa de território incluindo mordidas e perseguições.The gobis and blenis (Gobiidae and Bleniidae are the most important group of small benthic littoral fishes in tropical reefs, representing most of the high number of small fish species found in Western Atlantic. The natural history of gobiid and bleniid fish from Fernando de Noronha was assessed by means observation sessions using both snorkelling and scuba diving. Most of these observations were aimed at social behaviour, such as intra and interespecific interactions, territorial and reproductive behaviour. In general, these fish from Fernando de Noronha occurs in intertidal zone, are gregarious, with small home ranges of near 2 x 2 m², and show low agressivity towards other fish. Occasionally, some chasing was recorded between individuals of the same or distinct species. Low agressivity is probably associated to the occupation of small areas (e.g. tide pools, as a high degree of agressivity may represent an unnecessary [excessive] waste of energy. Most of the studied species presents cryptic coloration, associated to the avoidance of predators, but some males showed conspicuous coloration and intense aggressive behaviour, mainly during the reproductive season. It was only during this occasion that territorial behaviour, chasing and bites were recorded.

Territorial hypothesis predicts the trade-off between reproductive opportunities and parental care in three species of damselfishes (Pomacentridae: Actinopterygii La hipótesis territorial predice la compensación entre las oportunidades reproductivas y el cuidado parental en tres especies de peces damisela (Pomacentridae: Actinopterygii

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Eduardo Bessa

2012-03-01

Full Text Available Paternal care is rare in most animals, but common in fishes, including Pomacentridae. One way of explaining it is through the territorial hypothesis, which predicts that paternal care may evolve when caring for a territory with eggs will not cost more than territories without eggs. Here we describe the reproductive behavior of three pomacentrids from São Paulo, Brazil, and evaluate if the territorial hypothesis explains their behavioral variation through five predictions. We checked if females have multiple spawns (prediction 1, if they forage more (prediction 2 and if territory defence demands more when eggs are present (prediction 3. We also described how visible eggs are (prediction 4 and how available nesting sites are (prediction 5. Chromis multilineata differed from Abudefduf saxatilis and Stegastes fuscus by not guarding the eggs, spending less time with territoriality and fanning eggs; and more time feeding and foraging. Females of the three species are iteroparous. Females' A. saxatilis and S. fuscus foraged more than males, which spent the same amount of time in territorial defence before and after eggs were delivered. These two species also have very conspicuous egg clutches on clean rock surfaces defended by them. On the other hand, males and females of C. multilineata spent the same time foraging, while territoriality took more effort after eggs were present and it spawns cryptic eggs amid Sargassum, a common and disperse micro-environment in São Paulo rocky shores. Territorial hypothesis explains why paternal care by A. saxatilis and S. fuscus lasts longer than by C. multilineata.El cuidado paterno es raro en la mayoría de los animales, pero común en los peces, incluyendo los Pomacentridae. Una forma de explicar este fenómeno es la hipótesis territorial, que predice que el cuidado paterno puede evolucionar cuando la protección de un territorio con huevos no cuesta más que la de territorios sin huevos. Aquí se describe el comportamiento reproductivo de tres pomacentrídios de São Paulo, Brasil, y se evalúa si la hipótesis territorial explica la variación de su comportamiento a través de cinco predicciones. Se analizó si las hembras tienen múltiples desoves (predicción 1, si forrajean más (predicción 2 y si la defensa del territorio es mayor cuando los huevos están presentes (predicción 3. También se evaluó si los huevos eran visibles (predicción 4 y cuán disponibles eran los sitios de anidación (predicción 5. Chromis multilineata difería de Abudefduf saxatilis y Stegastes fuscus por no proteger a sus huevos, dedicar menos tiempo a la territorialidad y ventilación de sus huevos, y más tiempo para la alimentación y forrajeo. Las hembras de las tres especies son iteróparas. Las hembras de A. saxatilis y S. fuscus forrajean más que los machos, que gastan la misma cantidad de tiempo en la defensa territorial antes y después de liberar los huevos. Estas dos especies también defienden a desoves muy conspicuos adheridos en superficies de roca limpia. Por otra parte, las hembras y machos de C. multilineata pasaron el mismo tiempo forrajeando, mientras la territorialidad tomó más esfuerzo después, con los huevos presentes, y los desoves estaban escondidos en medio de Sargassum, un ambiente común y disperso en micro-ambientes de las costas rocosas de São Paulo. La hipótesis territorial explica el motivo por el cual el cuidado paterno de A. saxatilis y S. fuscus es más prolongado que el de C. multilineata.

An in vivo analysis of Cr6+ induced biochemical, genotoxicological and transcriptional profiling of genes related to oxidative stress, DNA damage and apoptosis in liver of fish, Channa punctatus (Bloch, 1793).

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Awasthi, Yashika; Ratn, Arun; Prasad, Rajesh; Kumar, Manoj; Trivedi, Sunil P

2018-07-01

Present study was designed to assess the hexavalent chromium (Cr 6+ ) mediated oxidative stress that induces DNA damage and apoptosis in adult fish, Channa punctatus (35 ± 3.0 g; 14.5 ± 1.0 cm; Actinopterygii). Fishes were maintained in three groups for 15, 30 and 45 d of exposure periods. They were treated with 5% (Group T1) and 10% (Group T2) of 96 h-LC 50 of chromium trioxide (Cr 6+ ). Controls were run for the similar duration. A significant (p < 0.05) increment in the activities of antioxidant enzymes, SOD and CAT in liver tissues of the exposed fish evinces the persistence of oxidative stress. A significant (p < 0.05) increase in induction of micronuclei (MN) coupled with transcriptional responses of target genes related to antioxidant enzymes, DNA damage and apoptosis (sod, cat, gsr, nox-1, p53, bax, bcl-2, apaf-1 and casp3a) establishes the impact of oxidative stress due to in vivo, Cr 6+ accumulation in liver as compared to control (0 mg/L), in a dose and exposure-dependent manner. Initially, the increased level of reactive oxygen species (ROS) in liver coincided with that of enhanced mRNA expression of antioxidant enzymes, sod, cat, gsr and nox-1 but, later, the overproduction of ROS, after 45 d of exposure of Cr 6+ , resulted in a significant (p < 0.05) up-regulation of p53. Our findings also unveil that the up-regulation of bax, apaf-1 and casp3a and down-regulation of bcl-2 are associated with Cr 6+ -induced oxidative stress mediated-apoptosis in liver of test fish. Aforesaid molecular markers can, thus, be efficiently utilized for bio-monitoring of aquatic regimes and conservation of fish biodiversity. Copyright © 2018 Elsevier B.V. All rights reserved.

Updated review of marine alien species and other ‘newcomers’ recorded from the Maltese Islands (Central Mediterranean

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J. EVANS

2015-03-01

Full Text Available An updated review of marine alien species and other ‘newcomers’ recorded from the Maltese Islands is presented on account of new records and amendments to a previous review in 2007. Species were classified according to their establishment status (‘Questionable’, ‘Casual’, ‘Established’, ‘Invasive’ and origin (‘Alien’, ‘Range expansion’, ‘Cryptogenic’. A total of 31 species were added to the inventory, while 6 species have been removed, bringing the total number of species to 73. Of these, 66 are considered to be aliens (or putative aliens but with uncertain origin with the remaining 7 resulting from range expansion. Six records are considered to be questionable and hence unverified. For verified records, the dominant taxonomic groups are Mollusca (represented by 21 species and Actinopterygii (15 species, followed by Crustacea (8 species and Rhodophyta (7 species. Eight of these species (aliens: Caulerpa cylindracea, Lophocladia lallemandi, Womersleyella setacea, Brachidontes pharaonis, Percnon gibbesi, Fistularia commersonii, Siganus luridus; range extender: Sphoeroides pachygaster are considered to be invasive. The introduction pathway for 30 species is unknown. Amongst the alien species, ‘Shipping’ is the most common introduction pathway, followed by ‘Secondary dispersal’ from elsewhere in the Mediterranean Sea. An increasing trend in the number of alien marine species reported from the Maltese Islands is evident, with a peak of 22 species recorded during the last decade (2001–2010. A discussion on the rationale for including range-expanding species in national inventories of recent arrivals, and in the analysis of trends in records from the Maltese Islands, is included. In particular, the general warming trend of Mediterranean surface waters appears to be facilitating the westward spread of thermophilic alien species from the Eastern to the Central Mediterranean, and the eastward range expansion of

Coeficientes de digestibilidad aparente de harina de pescado peruana y maíz amarillo duro para Colossoma macropomum (Actinopterygii, Characidae

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Felix Walter Gutierrez

2008-12-01

Full Text Available Los Coeficientes de Digestibilidad Aparente (CDA de la materia seca (MS, proteína cruda (PC, lípido crudo(LC y energía bruta (EB de los ingredientes alimenticios harina de pescado peruana (HPP y de maíz amarillo duro (MAD fueron determinados en juveniles de Colossoma macropomum (150,0 ± 25,5 g. En el experimento la dieta de referencia se mezcló con cada uno de los ingredientes prueba en una relación de 70:30. El óxido crómico se usó como indicador inerte. La dieta de referencia y las dietas prueba fueron suministradas a C. macropomum, criada a 27 ºC, 7 mg/L de oxígeno disuelto y pH entre 7,5. Las muestras fecales fueron colectadas por sifoneo. Los CDA para MS, PC, LC y EB de la HPP fueron de 88,06 ± 0,83%, 87,08 ± 1,34%, 85,87 ± 2,69 y 87,29 ± 1,57% respectivamente. Igualmente los CDA para MS, PC, LC y EB del MAD fueron de 82,38 ± 1,02%, 75,46 ± 1,53%, 76,17 ± 2,43% y 75,04 ± 1,80% respectivamente. La energía digestible aparente calculada fue de 3950 Kcal/kg para la HPP y 2830 kcal/kg para el MAD. Se concluye que C. macropomum digiere mejor las fracciones proteicas y energéticas de la HPP. Al mismo tiempo muestra que digiere también la fracción energética del MAD, proveniente de los carbohidratos solubles.

A NEW EARLY SEMIONOTIDAE (SEMIONOTIFORMES, ACTINOPTERYGII FROM THE UPPER LADINIAN OF MONTE SAN GIORGIO AREA SOUTHERN SWITZERLAND AND NORTHERN ITALY

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ANDREA TINTORI

2007-11-01

Full Text Available The early history of the Semionotiformes is still scarcely known as, apart from the Permian Acentrophorus, most of the Early and Middle Triassic taxa traditionally ascribed to this order are often poorly known and/or they actually belong to other groups. Sangiorgioichthys aldae gen. n. sp. n. is described from the Upper Ladinian Kalkschieferzone (Upper Meride Limestone of the Monte San Giorgio area on specimens coming from both Italy and Switzerland. The new genus is ascribed to the family Semionotidae as it shows several of the characters usually considered as diagnostic of the family itself, even if no real synapomorphies have been so far proposed for it. As a Semionotidae, Sangiorgioichthys gen. n. has an almost complete circumorbital series, large ascending process of the premaxilla, rostral and nasals almost tube-like, short maxilla, several suborbital bones posterior and ventral to the infraorbitals, long antero-dorsal process of the suboperculum, sensory canal system very rich in pores, mid dorsal ridge scales with an incipient spine. Peculiar characters of the new genus are dermal skull bones completely covered by ganoine, a very large ventral infraorbital almost attaining the anterior edge of the preoperculum, two ‘ventral’ suborbitals, very elongate anterior supraorbital bone,  dentition made of a number of tiny pencil-like teeth, anterior and posterior lateral line scales differentiated. 

First record of the silver-cheeked toad fish Lagocephalus scleratus (Gmelin, 1789 (Actinopterygii: Tetraodontidae from Chennai coastal waters, Southeast India

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Krishnan Silambarasan

2017-04-01

Full Text Available The silver-cheeked toad fish, Lagocephalus scleratus, was recorded for the first time on 25 September 2014. Two specimens of this fish species were collected from the by-catch landed by a commercial deep-sea trawler at Kasimedu Fishing Harbour, Chennai coast, Southeast India. The morphometric and meristic characters of the recorded specimens are described and discussed. The specimen was compared with earlier reports.

Parasite communities and infection levels of the invasive Chinese sleeper Perccottus glenii (Actinopterygii: Odontobutidae) from the Naab river basin, Germany

Czech Academy of Sciences Publication Activity Database

Kvach, Yuriy; Janáč, Michal; Nehring, S.; Ondračková, Markéta; Jurajda, Pavel

2017-01-01

Roč. 91, č. 6 (2017), s. 703-710 ISSN 0022-149X R&D Projects: GA ČR(CZ) GBP505/12/G112 Institutional support: RVO:68081766 Keywords : Amur sleeper * Baltic Sea Subject RIV: EG - Zoology OBOR OECD: Zoology Impact factor: 1.420, year: 2016

Topological congruence between phylogenies of Anacanthorus spp. (Monogenea: Dactylogyridae) and their Characiformes (Actinopterygii) hosts: A case of host-parasite cospeciation.

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da Graça, Rodrigo J; Fabrin, Thomaz M C; Gasques, Luciano S; Prioli, Sônia M A P; Balbuena, Juan A; Prioli, Alberto J; Takemoto, Ricardo M

2018-01-01

Cophylogenetic studies aim at testing specific hypotheses to understand the nature of coevolving associations between sets of organisms, such as host and parasites. Monogeneans and their hosts provide and interesting platform for these studies due to their high host specificity. In this context, the objective of the present study was to establish whether the relationship between Anacanthorus spp. with their hosts from the upper Paraná River and its tributaries can be explained by means of cospeciation processes. Nine fish species and 14 monogenean species, most of them host specific, were studied. Partial DNA sequences of the genes RAG1, 16S and COI of the fish hosts and of the genes ITS2, COI and 5.8S of the parasite species were used for phylogenetic reconstruction. Maximum likelihood phylogenetic trees of the host and parasite species were built and used for analyses of topological congruence with PACo and ParaFit. The program Jane was used to estimate the nature of cospeciation events. The comparison of the two phylogenies revealed high topological congruence between them. Both PACo and ParaFit supported the hypothesis of global cospeciation. Results from Jane pointed to duplications as the most frequent coevolutionary event, followed by cospeciation, whereas duplications followed by host-switching were the least common event in Anacanthorus spp. studied. Host-sharing (spreading) was also identified but only between congeneric host species.

The phylogenetic intrarelationships of spiny-rayed fishes (Acanthomorpha, Teleostei, Actinopterygii: fossil taxa increase the congruence of morphology with molecular data

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Donald Davesne

2016-11-01

Full Text Available Acanthomorpha (spiny-rayed fishes is a clade of teleosts that includes more than 15 000 extant species. Their deep phylogenetic intrarelationships, first reconstructed using morphological characters, have been extensively revised with molecular data. Moreover, the deep branches of the acanthomorph tree are still largely unresolved, with strong disagreement between studies. Here, we review the historical propositions for acanthomorph deep intrarelationships and attempt to resolve their earliest branching patterns using a new morphological data matrix compiling and revising characters from previous studies. The taxon sampling we use constitutes a first attempt to test all previous hypotheses (molecular and morphological alike with morphological data only. Our sampling also includes Late Cretaceous fossil taxa, which yield new character state combinations that are absent in extant taxa. Analysis of the complete morphological data matrix yields a new topology that shows remarkable congruence with the well-supported molecular results. Lampridiformes (oarfishes and allies are the sister to all other acanthomorphs. Gadiformes (cods and allies and Zeiformes (dories form a clade with Percopsiformes (trout-perches and the enigmatic Polymixia (beardfish and Stylephorus (tube-eye. Ophidiiformes (cusk-eels and allies and Batrachoidiformes (toadfishes are nested within Percomorpha, the clade that includes most of modern acanthomorph diversity. These results provide morphological synapomorphies and independent corroboration of clades previously only recovered from molecular data, thereby suggesting the emergence of a congruent picture of acanthomorph deep intrarelationships. Fossil taxa play a critical role in achieving this congruence, since a very different topology is found when they are excluded from the analysis.

Morphometric variation between two morphotypes within the Astyanax Baird and Girard, 1854 (Actinopterygii: Characidae) genus, from a Mexican tropical lake.

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Ornelas-García, Claudia P; Bastir, Markus; Doadrio, Ignacio

2014-07-01

Phenotypic variation is important for evolutionary processes because it can allow local adaptation, promote genetic segregation, and ultimately give rise to speciation. Lacustrine systems provide a unique opportunity to study the mechanisms by which sister species can co-occur by means of ecological segregation. The fish genus Astyanax is characterized by high levels of phenotypic variability, providing an excellent model for the study of local specialization. Here, we analyze the morphological specializations through geometric morphometrics of two sympatric species described as different genera: Bramocharax caballeroi endemic to Lake Catemaco, and the widely distributed Astyanax aeneus. Additionally, we assess the correlation between phenotypic and genetic structure, and the phylogenetic signal of morphological variation. We examined body size and shape variation in 196 individuals and analyzed mitochondrial cytochrome b sequences in 298 individuals. Our results confirm the striking morphological divergence among the sympatric characids. Differences between them were mainly found in the body depth and profile and orientation of the head, where B. caballeroi in contrast with the A. aeneus, presented a fusiform body and an upward mouth. Moreover, different growth trajectories were observed among morphotypes, suggesting that a heterochronic process could be involved in the diversification of our study system. Morphological differences did not correspond with the molecular differentiation, suggesting high levels of homoplasy among the lineages of B. caballeroi morphs. © 2014 Wiley Periodicals, Inc.

Chromosomes of Iberian Leuciscinae (Cyprinidae) Revisited: Evidence of Genome Restructuring in Homoploid Hybrids Using Dual-Color FISH and CGH

Czech Academy of Sciences Publication Activity Database

Pereira, C. S.; Ráb, Petr; Collares-Pereira, M. J.

2013-01-01

Roč. 141, 2/3 (2013), s. 143-152 ISSN 1424-8581 R&D Projects: GA ČR GA13-37277S Institutional support: RVO:67985904 Keywords : CGH/GISH * Chondrostoma s.I. * genome reshuffling hybridization Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.905, year: 2013

Variability and condition of common minnow (Phoxinus phoxinus, Cyprinidae, Cypriniformes) on the Semipalatinsk range and out of its influence

International Nuclear Information System (INIS)

Mitrofanov, I.V.; Matmuratov, S.A.

2003-01-01

Populations of common minnow (Phoxinus phoxinus) from five rivers of Irtysh and Balkhash basins were investigated. Population from the Shagan river situated inside area of Semipalatinsk Range influence. This population has normal sexual structure and high growth rate. Condition factor of all fishes is high. Population from Semipalatinsk Range has increased variability of characteristics due to increasing of stochastic part of general variability. Abnormalities of external fish morphology are not observed in this area. Asymmetry of bilateral characteristics is low. (author)

Detection of morphometric differentiation in Sattar snowtrout, Schizothorax curvifrons (Cypriniformes: Cyprinidae) from Kashmir Himalaya using a truss network system.

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Mir, Farooq Ahmad; Mir, Javaid Iqbal; Chandra, Suresh

2014-03-01

Schizothorax curvifrons is a morphometrically and meristically most variable and economically valuable promising fish food from Kashmir Valley. Since there is a lack of information on stock structure of wild populations on this species, this study was aimed to investigate the intraspecific variation of this important snowtrout. For this, two rivers and one lake in Kashmir Himalaya were sampled from January 2011 to October 2012. Fish body measurements were taken and morphometric characters using the truss network system was constructed. Altogether, 506 fish specimens were collected. Data were subjected to principal component analysis, discriminant function analysis and univariate analysis of variance. The first principal component explained 63.44% of total variation, while second and third components explained 8.34% and 5.31%, respectively. The step-wise discriminant function analysis retained two variables that significantly discriminated the populations. Using these variables 83.4% of the original specimens were classified into their correct groups and 81.1% of the cross-validated (leave one out procedure) specimens were classified into their correct groups. All of the total 31 transformed truss measurements exhibited highly significant (pHimalaya area.

Setting Conservation Priorities in a Widespread Species: Phylogeographic and Physiological Variation in the Lake Chub, Couesius plumbeus (Pisces: Cyprinidae

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Patricia M. Schulte

2013-04-01

Full Text Available Defining units of conservation below the species level is a widely accepted conservation priority, but is especially challenging for widespread taxa that have experienced diverse geographic histories and exist across heterogenous environments. The lake chub (Pisces: Couesius plumbeus is a widespread freshwater fish in North America and occurs from the southcentral USA to northwestern Alaska and Canada. We used mtDNA sequence analysis to test for divergent lineages predicted to occur as a result of survival of lake chub in distinct glacial refugia. Lake chub consisted of two major mtDNA lineages separated by 3.8% sequence divergence which are probably late to pre-Pleistocene in origin. We combined these data with those consistent with thermal adaptation in fish living in thermal springs versus those living in a lake with wide seasonal temperature variation, and with data on distribution of lake chub in major watershed units. We assessed these data against objective criteria developed to identify conservation units under Canadian endangered species legislation. Our analysis identified twelve major units of conservation within C. plumbeus that could be assessed under Canada’s Species-at-Risk Act. Our study illustrates how different character traits manifested at very different spatial scales can be used to define conservation units within widely-distributed taxa.

The analysis of the pharyngeal-sieve mechanism and the efficiency of food intake in the bream (Abramis brama, Cyprinidae)

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Hoogenboezem, W.

1991-01-01

This thesis describes the mechanism and the selectivity of food intake in bream ( Abramis brama ). It is a compilation of six articles which have been published (or will soon be published) in international journals.

In the first chapter, diets and feeding modes in

Population genetic characterization and family reconstruction in brood bank collections of the Indian major carp Labeo rohita (Cyprinidae:Cypriniformes).

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Ullah, Ashraf; Basak, Abhisak; Islam, Md Nazrul; Alam, Md Samsul

2015-01-01

The founder stock of a captive breeding program is prone to changes in genetic structure due to inbreeding and genetic drift. Genetic characterization of the founder population using suitable molecular markers may help monitor periodic changes in the genetic structure in future. To develop benchmark information about the genetic structure we analyzed six microsatellite loci in the Brodbank collections of rohu (Labeo rohita) originated from three major rivers-the Jamuna, the Padma and the Halda. A total of 28 alleles were detected in 90 individuals with an average of 4.6 alleles per locus. The average observed heterozygosity ranged from 0.655 to 0.705 and the expected heterozygosity ranged from 0.702 to 0.725. The mean F IS values were 0.103, 0.106 and 0.018 for the Jamuna, Padma and Halda fishes respectively. The population pair-wise F ST values ranged from 0.0057 to 0.0278. Structure analysis grouped the fishes of the three rivers into two clusters. The numbers of half-sib families were 5, 5 and 4 and the numbers of full-sib families were 12, 10 and 18 for the Halda, Jamuna and the Padma samples respectively. Bottleneck was detected in all the river samples. We recommend to collect more fish from different locations of the major rivers to broaden the genetic variability of the founder stocks of the Brood bank.

Assessment of heavy metal load in chub liver (Cyprinidae – Leuciscus cephalus from the Nišava River (Serbia

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Jovanović, B.

2011-09-01

Full Text Available The Nišava River plays an important role as the source for both drinking water and agricultural irrigation due to its hydrological and geomorphological characteristics as the largest river in the region of southeast Serbia. In this study we used the liver of the chub (Leiciscus cephalus as a tool for biomonitoring heavy metal accumulation along the river. Chub specimens were sampled from two localities (one at the border with Bulgaria and a second in the city of Niš. Concentrations were estimated for six heavy metals (iron, cadmium, copper, zinc, lead and manganese in chub liver. Low bioconcentration level was observed for most of the metals and the concentrations corresponded to the nominal concentration in livers of fish inhabiting metal unpolluted streams and rivers. However, cadmium concentration in the chub liver exceeded 0.5 mg kg-1, a several hundred folds increase from nominal concentration indicating a potential toxic exposure of the fish and of the stream ecosystem to this heavy metal. Hepatosomatic indices were calculated and tested for the impact of metal concentrations on liver size. A decrease of the hepatic index was observed in fish with higher cadmium concentration, suggesting a possible impact on the health of the chub population in the Nišava River.

Indigenous fish species in the modern ichthyofauna of the Balkhash basin

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Nadir Shamilevich Mamilov

2015-11-01

Full Text Available Indigenous fish fauna of the Balkhash basin was mostly formed in the postglacial period and consists of 10 species from Cyprinidae family, 5 from Balitoridae, and 1 from Percidae. More than 20 alien fish species were introduced here during XXth century that led to eradication of indigenous fishes from the Balkhash Lake and the Ili River. Our investigations of the fish fauna during last 25 years revealed permanent shortage of living area of indigenous fishes. Nowadays fish communities from only indigenous fish species exist in some remote and isolated water bodies. Areas of all indigenous fish species are become disconnected. Reduction of habitats goes relatively slow for naked osman Gymnodiptychus dybowskii (Kessler, 1874, spotted thicklip loach Triplophysa strauchii (Kessler, 1874, and gray loach Triplophysa dorsalis (Kessler, 1872. Drastic reductions of areas were revealed for Ili marinka Schizothorax pseudoaksaiensis Herzenstein 1889, Balkhash marinka Schizothorax argentatus Kessler 1874, Severtsov’s loach Triplophysa sewerzowii (G.Nikolskii, 1938, Seven River’s minnow Phoxinus brachyurus Berg 1912, Balkhsh minnow Rhynchocypris poljakowii Kessler 1879, and Balkhash perch Perca schrenkii Kessler 1874. Marinkas, osmans and perch often become victims of overfishing and poaching of local people. In that region water resources usually are used by wasteful way and loaded with pollutants. Many indigenous fish species are able to bear relatively high level of environment pollution. Hence, the main threats for indigenous fishes are introductions of trout and sander, habitats lose and unstable hydrological regimen.

Population demographics and life history of the round hickorynut (Obovaria subrotunda) in the Duck River, Tennessee

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Ehlo, Chase A.; Layzer, James B.

2014-01-01

Population characteristics and life history aspects of healthy mussel populations are poorly understood. The reproductive cycle, age and growth, and population structure of Obovaria subrotunda were examined at four sites in the middle Duck River, Tennessee. Obovaria subrotunda was confirmed to be a bradytictic species, spawning in the late summer and holding glochidia in the gills for 11 mo until the following summer. Fecundity was positively related to mussel length (R2  =  0.75) and ranged from 7122 to 76,584 glochidia. Fourteen species of fish found in the Duck River, in the families Percidae, Cyprinidae, and Cottidae, were infested with glochidia in the laboratory to examine potential hosts. Juveniles transformed onEtheostoma blennioides (greenside darter), E. obama (spangled darter), E. flabellare (fantail darter), and Cottus carolinae (banded sculpin). Analyses of shell thin-sections indicated that males grew faster and obtained a larger size than females. Individuals live to at least 14 y old. Females became sexually mature at age one. Four sites were quantitatively sampled using a systematic design with three random starts. The observed ratio of adult males to females (0.9∶1) did not differ significantly from 1∶1. Results of the quantitative sampling showed an increase in density compared to earlier studies and a high proportion of 1 to 5 y old O. subrotunda.

Do laboratory species protect endangered species? Interspecies variation in responses to 17β-estradiol, a model endocrine active compound

Science.gov (United States)

Jorgenson, Zachary G.; Buhl, Kevin J.; Bartell, Stephen E.; Schoenfuss, Heiko L.

2015-01-01

Although the effects of estrogens on model laboratory species are well documented, their utility as surrogates for other species, including those listed as endangered, are less clear. Traditionally, conservation policies are evaluated based on model organism responses but are intended to protect all species in an environment. We tested the hypothesis that the endangered Rio Grande silvery minnow (Hybognathus amarus) is more vulnerable to endocrine disruption—as assessed through its larval predator-escape performance, survival, juvenile sex ratios, and whole-body vitellogenin concentration—than the commonly used toxicological model species fathead minnow (Pimephales promelas) and the bluegill sunfish (Lepomis macrochirus). Fish were exposed concurrently for 21 days to the model endocrine active compound (EAC) 17ß-estradiol (E2) at 10 ng E2/L and 30 ng E2/L in a flow-through system using reconstituted water that simulated the physicochemical conditions of the Middle Rio Grande in New Mexico, USA. No significant differences were observed between the fathead and silvery minnow in larval predator-escape response or juvenile sex ratio. Rio Grande silvery minnow survival decreased significantly at day 14 compared with the other two species; by day 21, both cyprinid species (silvery minnow and fathead minnow) exhibited a significant decrease in survival compared with bluegill sunfish, a member of the family Centrarchidae. Male Rio Grande silvery minnow showed a significant increase in whole-body vitellogenin concentration in the 10 ng/L treatment, whereas fathead minnow and bluegill sunfish showed no significant increases in vitellogenin concentrations across treatments. Our study showed response differences to estrogen exposures between the two cyprinid species and further divergence in responses between the families Cyprinidae and Centrarchidae. These results suggest that commonly used laboratory model organisms may be less sensitive to EACs than the endangered

[Ichthyofauna and its community diversity in volcanic barrier lakes of Northeast China].

Science.gov (United States)

Yang, Fu-Yi; Lü, Xian-Guo; Lou, Yan-Jing; Lou, Xiao-Nan; Xue, Bin; Yao, Shu-Chun; Xiao, Hai-Feng

2012-12-01

Based on the investigations of fish resources in Jingpo Lake and Wudalianchi Lakes in 2008-2011 and the historical data, this paper analyzed the characteristics of ichthyofauna and its community diversity in volcanic barrier lakes of Northeast China. The ichthyofauna in the volcanic barrier lakes of Northeast China was consisted of 64 native species, belonging to 47 genera, 16 families, and 9 orders, among which, one species was the second class National protected wild animal, four species were Chinese endemic species, and five species were Chinese vulnerable species. In the 64 recorded species, there were 44 species of Cypriniformes order and 37 species of Cyprinidae family dominated, respectively. The ichthyofauna in the volcanic barrier lakes of Northeast China was formed by 7 fauna complexes, among which, the eastern plain fauna complex was dominant, the common species from the South and the North occupied 53.1%, and the northern endemic species took up 46.9%. The Shannon, Fisher-alpha, Pielou, Margalef, and Simpson indices of the ichthyofauna were 2.078, 4.536, 0.575, 3.723, and 0.269, respectively, and the abundance distribution pattern of native species accorded with lognormal model. The Bray-Curtis, Morisita-Horn, Ochiai, Sørensen, and Whittaker indices between the communities of ichthyofauna in the volcanic barrier lakes of Northeast China and the Jingpo Lake were 0.820, 0.992, 0.870, 0.862 and 0.138, respectively, and those between the communities of ichthyofauna in the volcanic barrier lakes and the Wudalianchi Lakes were 0.210, 0.516, 0.838, 0.825, and 0.175, respectively. The ichthyofauna in volcanic barrier lakes of Northeast China was characterized by the mutual infiltration between the South and the North, and the overlap and transition between the Palaeoarctic realm and the Oricetal realm. It was suggested that the ichthyofauna community species diversity in the volcanic barrier lakes of Northeast China was higher, the species structure was more

Biological characteristics of crucian by quantitative inspection method

Science.gov (United States)

Chu, Mengqi

2015-04-01

Biological characteristics of crucian by quantitative inspection method Through quantitative inspection method , the biological characteristics of crucian was preliminary researched. Crucian , Belongs to Cypriniformes, Cyprinidae, Carassius auratus, is a kind of main plant-eating omnivorous fish,like Gregarious, selection and ranking. Crucian are widely distributed, perennial water all over the country all have production. Determine the indicators of crucian in the experiment, to understand the growth, reproduction situation of crucian in this area . Using the measured data (such as the scale length ,scale size and wheel diameter and so on) and related functional to calculate growth of crucian in any one year.According to the egg shape, color, weight ,etc to determine its maturity, with the mean egg diameter per 20 eggs and the number of eggs per 0.5 grams, to calculate the relative and absolute fecundity of the fish .Measured crucian were female puberty. Based on the relation between the scale diameter and length and the information, linear relationship between crucian scale diameter and length: y=1.530+3.0649. From the data, the fertility and is closely relative to the increase of age. The older, the more mature gonad development. The more amount of eggs. In addition, absolute fecundity increases with the pituitary gland.Through quantitative check crucian bait food intake by the object, reveals the main food, secondary foods, and chance food of crucian ,and understand that crucian degree of be fond of of all kinds of bait organisms.Fish fertility with weight gain, it has the characteristics of species and populations, and at the same tmes influenced by the age of the individual, body length, body weight, environmental conditions (especially the nutrition conditions), and breeding habits, spawning times factors and the size of the egg. After a series of studies of crucian biological character, provide the ecological basis for local crucian's feeding, breeding

Do laboratory species protect endangered species? Interspecies variation in responses to 17β-estradiol, a model endocrine active compound.

Science.gov (United States)

Jorgenson, Z G; Buhl, K; Bartell, S E; Schoenfuss, H L

2015-01-01

Although the effects of estrogens on model laboratory species are well documented, their utility as surrogates for other species, including those listed as endangered, are less clear. Traditionally, conservation policies are evaluated based on model organism responses but are intended to protect all species in an environment. We tested the hypothesis that the endangered Rio Grande silvery minnow (Hybognathus amarus) is more vulnerable to endocrine disruption-as assessed through its larval predator-escape performance, survival, juvenile sex ratios, and whole-body vitellogenin concentration-than the commonly used toxicological model species fathead minnow (Pimephales promelas) and the bluegill sunfish (Lepomis macrochirus). Fish were exposed concurrently for 21 days to the model endocrine active compound (EAC) 17ß-estradiol (E2) at 10 ng E2/L and 30 ng E2/L in a flow-through system using reconstituted water that simulated the physicochemical conditions of the Middle Rio Grande in New Mexico, USA. No significant differences were observed between the fathead and silvery minnow in larval predator-escape response or juvenile sex ratio. Rio Grande silvery minnow survival decreased significantly at day 14 compared with the other two species; by day 21, both cyprinid species (silvery minnow and fathead minnow) exhibited a significant decrease in survival compared with bluegill sunfish, a member of the family Centrarchidae. Male Rio Grande silvery minnow showed a significant increase in whole-body vitellogenin concentration in the 10 ng/L treatment, whereas fathead minnow and bluegill sunfish showed no significant increases in vitellogenin concentrations across treatments. Our study showed response differences to estrogen exposures between the two cyprinid species and further divergence in responses between the families Cyprinidae and Centrarchidae. These results suggest that commonly used laboratory model organisms may be less sensitive to EACs than the endangered Rio

Morphological and quantitative analysis of myenteric plexus neurons of intestinal bulb of Cyprinus carpio (Linnaeus, 1758 (Osteichthyes, Cyprinidae Análise morfológica e quantitativa dos neurônios do plexo mientérico do bulbo intestinal de Cyprinus Carpio. (Linnaeus, 1758 (Osteichthyes, Cyprinidae

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Patrícia Marega

2000-05-01

Full Text Available The myenteric plexus shows morphologic and quantitative variability in the alimentary canals of different species of animals. We have quantified and analyzed the morphology of the myenteric plexus of ten adult Cyprinus carpio intestinal bulbs, by means of histological cross sections stained with HE and Van Gieson methods, as well as Giemsa-stained whole mount preparations. The myenteric plexus, located between the longitudinal and circular layers of the muscular tunic, is formed by isolated neurons and ganglia. Percentages of small, medium and large neurons were 21%, 63.4% and 15.6%, respectively, with a prevalence of intermediary cytoplasmic basophily and peripheral nuclei. Neuronal density in 6.92mm2 of intestinal bulb was of 2,040 neuronsO plexo mientérico apresenta variabilidade morfológica e quantitativa ao longo do tubo digestório das diferentes espécies animais. No presente trabalho quantificamos e analisamos a morfologia dos neurônios do plexo mientérico de dez bulbos intestinais de Cyprinus carpio, por meio de cortes histológicos corados com HE e Van Gieson e de preparados de membrana corados pelo método de Giemsa. O plexo mientérico foi localizado entre os estratos longitudinal e circular da túnica muscular, sendo constituído por neurônios isolados e por gânglios. As porcentagens de neurônios pequenos, médios e grandes foram 21%, 63,4% e 15,6%, respectivamente, predominando neurônios com basofilia citoplasmática intermediária e núcleo em posição periférica. A análise quantitativa revelou a presença de 2.040 neurônios/6,92mm2 de bulbo intestinal

First record of the Chinese sleeper, Perccottus glenii Dybowski, 1877 (Actinopterygii: Odontobutidae) in the Dnieper Estuary, southern Ukraine (Black Sea drainage)

Czech Academy of Sciences Publication Activity Database

Kvach, Yuriy; Dykyy, I.; Janko, Karel

2016-01-01

Roč. 5, č. 4 (2016), s. 285-290 E-ISSN 2242-1300 R&D Projects: GA ČR(CZ) GBP505/12/G112; GA ČR GA13-12580S Institutional support: RVO:68081766 ; RVO:67985904 Keywords : invasive species * new finding * Dnieper Estuary * Ukraine Subject RIV: EH - Ecology, Behaviour Impact factor: 0.835, year: 2016 http://www.reabic.net/journals/bir/2016/4/BIR_2016_Kvach_etal.pdf

Composição em tamanho dos peixes (Actinopterygii, Teleostei de ribeirões da bacia do rio Tibagi, Paraná, Brasil

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Shibatta Oscar A.

2003-01-01

Full Text Available The standard length of 7610 specimens of 43 species from eight streams of rio Tibagi basin was obtained in order to analyze the means of fish sizes. The higher mean size was observed in Gymnotus carapo Linnaeus, 1758 (165,5 mm and the smaller, in Phalloceros caudimaculatus (Hensel, 1868 (16,25 mm. Some fish like Acestrorhynchus lacustris (Reinhardt, 1874, Leporinus obtusidens (Valenciennes, 1836, Gymnotus carapo Linneus, 1758 and Synbranchus marmoratus Bloch, 1795 can reach big or medium size when adults but were collected only young, evidencing they use some streams in beginning of life. The mean size of total species was 49,81mm, what shows the small size composition of fishes in the streams. The Kolmogov-Smirnov test comparing the mean size of all streams showed significant similar size both in upstream and downstream regions, independent to the different environmental conditions.

Molecular evolution of myoglobin in the Tibetan Plateau endemic schizothoracine fish (Cyprinidae, Teleostei) and tissue-specific expression changes under hypoxia.

Science.gov (United States)

Qi, Delin; Chao, Yan; Zhao, Yongli; Xia, Mingzhe; Wu, Rongrong

2018-04-01

Myoglobin (Mb) is an oxygen-binding hemoprotein that was once thought to be exclusively expressed in oxidative myocytes of skeletal and cardiac muscle where it serves in oxygen storage and facilitates intracellular oxygen diffusion. In this study, we cloned the coding sequence of the Mb gene from four species, representing three groups, of the schizothoracine fish endemic to the Qinghai-Tibetan Plateau (QTP), then conducted molecular evolution analyses. We also investigated tissue expression patterns of Mb and the expression response to moderate and severe hypoxia at the mRNA and protein levels in a representative of the highly specialized schizothoracine fish species, Schizopygopsis pylzovi. Molecular evolution analyses showed that Mb from the highly specialized schizothoracine fish have undergone positive selection and one positively selected residue (81L) was identified, which is located in the F helix, close to or in contact with the heme. We present tentative evidence that the Mb duplication event occurred in the ancestor of the schizothoracine and Cyprininae fish (common carp and goldfish), and that the Mb2 paralog was subsequently lost in the schizothoracine fish. In S. pylzovi, Mb mRNA is expressed in various tissues with the exception of the intestine and gill, but all such tissues, including the liver, muscle, kidney, brain, eye, and skin, expressed very low levels of Mb mRNA (Tibetan Plateau fish.

Mapping the potential distribution of the invasive Red Shiner, Cyprinella lutrensis (Teleostei: Cyprinidae) across waterways of the conterminous United States

Science.gov (United States)

Poulos, Helen M.; Chernoff, Barry; Fuller, Pam L.; Butman, David

2012-01-01

Predicting the future spread of non-native aquatic species continues to be a high priority for natural resource managers striving to maintain biodiversity and ecosystem function. Modeling the potential distributions of alien aquatic species through spatially explicit mapping is an increasingly important tool for risk assessment and prediction. Habitat modeling also facilitates the identification of key environmental variables influencing species distributions. We modeled the potential distribution of an aggressive invasive minnow, the red shiner (Cyprinella lutrensis), in waterways of the conterminous United States using maximum entropy (Maxent). We used inventory records from the USGS Nonindigenous Aquatic Species Database, native records for C. lutrensis from museum collections, and a geographic information system of 20 raster climatic and environmental variables to produce a map of potential red shiner habitat. Summer climatic variables were the most important environmental predictors of C. lutrensis distribution, which was consistent with the high temperature tolerance of this species. Results from this study provide insights into the locations and environmental conditions in the US that are susceptible to red shiner invasion.

Effect of temperature on the effectiveness of artificial reproduction of dace [Cyprinidae (Leuciscus leuciscus (L.))] under laboratory and field conditions.

Science.gov (United States)

Nowosad, Joanna; Targońska, Katarzyna; Chwaluczyk, Rafał; Kaszubowski, Rafał; Kucharczyk, Dariusz

2014-10-01

This study sought to determine the effect of water temperature on the effectiveness of artificial reproduction of dace brooders under laboratory and field conditions. Three temperatures were tested in the laboratory: 9.5, 12 and 14.5 °C (± 0.1 °C). The water temperature under field conditions was 11.0 ± 0.3 °C (Czarci Jar Fish Farm) and 13.2 ± 1.4 °C (Janowo Fish Farm). The study showed that artificial reproduction of dace is possible in all the temperature ranges under study and an embryo survival rate of over 87% can be achieved. Dace has also been found to be very sensitive to rapid temperature changes, even within the temperature ranges optimal for the species. Such changes have an adverse effect on the outcome of the reproduction process, such as a decrease in the percentage of reproducing females, a decrease in the pseudo-gonado-somatic index (PGSI) and a decrease in the embryo survival rate. Copyright © 2014 Elsevier Ltd. All rights reserved.

Genotoxic effects and gene expression in Danio rerio (Hamilton 1822) (Cypriniformes: Cyprinidae) exposed to mining-impacted tributaries in Manizales, Colombia.

Science.gov (United States)

Ossa-López, Paula A; Castaño-Villa, Gabriel J; Rivera-Páez, Fredy A

2017-09-25

The zebrafish (Danio rerio) is one of the most studied aquatic organisms for water biomonitoring, due to its sensitivity to environmental degradation and resistance to toxic substances. This study determined the presence of micronuclei and nuclear abnormalities in peripheral blood erythrocytes, and assessed the gene expression of caspase-3 (CASP-3) and metallothionein 1 (MT-1) in the gills and liver of D. rerio. The study fish (n = 45) were exposed to water collected from two stations with mining impact (E2 and E3) and a reference station without evident mining contamination (E1), all located in La Elvira stream (Manizales-Colombia). In addition, a positive control (PC) with HgCl 2 (50 μg/L) and negative control (NC) with tap water were included. The fish from the PC and E2 and E3 treatments displayed genotoxic effects and changes in gene expression, with significant differences in micronuclei formation and the presence of blebbed nuclei. The cytochrome oxidase subunit I (COI) gene was used as reference and proved to be stable compared to the β-actin and 28S ribosomal RNA (28S) genes. In gills, CASP-3 expression was higher in the PC, and MT-1 expression was higher in the PC and E3 treatment. In liver, CASP-3 was expressed in the E2 treatment, and MT-1 expression was low. These results show that the genotoxic effects and differential gene expression observed in fish exposed to water from La Elvira stream could also be affecting the organisms present in this habitat.

Comparison of the bioaccumulation from seawater and depuration of heavy metals and radionuclides in the spotted dogfish Scyliorhinus canicula (Chondrichthys) and the turbot Psetta maxima (Actinopterygii: Teleostei)

International Nuclear Information System (INIS)

Jeffree, Ross A.; Warnau, Michel; Teyssie, Jean-Louis; Markich, Scott J.

2006-01-01

241 Am and 57 Co, but every tissue of turbot had a higher concentration of 134 Cs, compared to dogfish, particularly the muscle and liver. The elevated uptake rates and higher CFs for most radioisotopes indicate that S. canicula is more susceptible than P. maxima to exposure and contamination by these metals and radionuclides in seawater. These experimentally-determined differences between dogfish and turbot in their bioaccumulation characteristics were assessed against a set of criteria erected to evaluate the working hypothesis that they were taxonomically based. The outcomes of this initial assessment were supportive of this hypothesis that warrants further investigation

First Record of Transversotrema Witenberg, 1944 (Digenea) from the Americas, with Comments on the Taxonomy of Transversotrema patialense (Soparkar, 1924) Crusz and Sathananthan, 1960, and an Updated List of Its Hosts and Geographic Distribution.

Science.gov (United States)

Womble, Matthew R; Cox-Gardiner, Stephanie J; Cribb, Thomas H; Bullard, Stephen A

2015-12-01

Specimens of Transversotrema patialense (sensu lato) ( Soparkar, 1924 ) Crusz and Sathananthan, 1960 (Digenea: Transversotrematidae) infected the skin (epidermal spaces beneath scales near pectoral fins) of 4 of 126 (prevalence 3%; mean intensity 1.8) zebrafish ( Danio rerio (Hamilton, 1822) [Cypriniformes: Cyprinidae]) purchased in 2009 and cultured by a California (USA) fish supplier. These fish were sold as "laboratory-reared" and "specific pathogen free," purportedly raised in a recirculating aquaculture system that included zebrafish only. We herein describe the morphological features of this transversotrematid using light and scanning electron microscopy, provide a comprehensive list of hosts (snails and fishes) and geographic locality records for specimens reported as T. patialense, which is perhaps a species complex, and provide a brief historical synopsis of the taxonomic and life history research that has been conducted on this fluke. No species of Transversotrema previously had been reported from the Americas; however, this discovery is not surprising given that: (1) a suitable intermediate host (red-rimmed melania, Melanoides tuberculata (Müller, 1774) [Cerithioidea: Thiaridae]) has been established in California and elsewhere in North America, (2) the zebrafish is a susceptible definitive host, and (3) T. patialense reportedly matures on a broad ecological and phylogenetic spectrum of freshwater fishes. To our knowledge, this is the northern-most geographic locality record for a species of this genus. We suspect this case study represents an example of a parasite that may now be established in North America by the fortuitous co-occurrence of a susceptible, exotic snail host (the red-rimmed melania) and a susceptible, widely distributed, exotic fish host (the zebrafish).

Cs-134 transfer from water or food to the Ciprinid Tinca tinca Linnaeus: uptake and loss kinetics

International Nuclear Information System (INIS)

Corisco, J.A.G.; Carreiro, M.C.V.

1991-01-01

Experiments with 134 Cs and the fish Tinca tinca Linnaeus (fam. Cyprinidae), as a part of a more extensive work, concerning a simplified freshwater trophic chain using water from Fratel dam, (at Tejo River), were undertaken. Direct uptake from water, during a period of about 30 days, leads to a kinetics expressed by the power function: CF (t) = 0.58 t 0.781 (t in days), the concentration factor (CF) referred to wet weight. Retention study, showed the existence of two biological half-lives, Tb 1 = 7 days and Tb 2 = 87 days, which might concern respectively, the 134 Cs desorption from the transit organs and the loss of the assimilated isotope from the storage organs. In the accumulation through the food chain, using planktonic crustacean Daphnia magna Straus (Cladocera) as prey, a transfer factor (TF) related to wet weight of both fish and prey, is estimated through the power function: TF (t) = 0.022 t 0.578 (t in days). Finally, the retention study following the food pathway contamination, stresses the existence of one long term component, with half-life Tb = 61 days. The transfer factor kinetics seems to point out to a rather slow process, leading to lower 134 Cs concentration values, than the contamination through the water. The loss of the assimilated 134 Cs, uptaken through both pathways, water or food, is a slow process. The longer biological half-life is very important in Radiological Protection, once it may be attributed to the radionuclide loss from the muscular mass. (author)

Morphological and molecular data for a new species of Pomphorhynchus Monticelli, 1905 (Acanthocephala: Pomphorhynchidae) in the Mexican redhorse Moxostoma austrinum Bean (Cypriniformes: Catostomidae) in central Mexico.

Science.gov (United States)

García-Varela, Martín; Mendoza-Garfias, Berenit; Choudhury, Anindo; Pérez-Ponce de León, Gerardo

2017-11-01

Pomphorhynchus purhepechus n. sp. is described from the intestine of the Mexican redhorse Moxostoma austrinum Bean (Catostomidae) in central Mexico. The new species can be distinguished from the other seven described species of Pomphorhynchus Monticelli, 1905 in the Americas by a subspherical proboscis and 14 longitudinal rows with 16-18 hooks each; the third and the fourth row of hooks are alternately longest. Sequences of the mitochondrial cytochrome c oxidase subunit 1 (cox1) gene and the large subunit (LSU) rDNA (including the domains D2-D3) were used to corroborate the morphological distinction between the new species and Pomphorhynchus bulbocolli Linkins in Van Cleave, 1919, a species widely distributed in several freshwater fish species across Canada, USA, and Mexico. The genetic divergence estimated between the new species and the isolates of P. bulbocolli ranged between 13 and 14% for cox1, and between 0.6 and 0.8% for LSU. Maximum likelihood and Bayesian inference analyses of each dataset showed that the isolates of P. bulbocolli parasitising freshwater fishes from three families, the Catostomidae, Cyprinidae and Centrarchidae, represent a separate lineage, and that the acanthocephalans collected from two localities in central Mexico comprise an independent lineage. In addition, our analysis of the genetic variation of P. bulbocolli demonstrates that individuals of this acanthocephalan from different host species are conspecific. Finally, the distribution, host-association, and phylogenetic relationship of the new species, when placed in the context of the region's geological history, suggest that both host and parasite underwent speciation after their ancestors became isolated in Central Mexico.

Variation in life-history traits between a newly established and long-established population of non-native pumpkinseed, Lepomis gibbosus (Actinopterygii: Perciformes: Centrarchidae)

Czech Academy of Sciences Publication Activity Database

Konečná, Markéta; Janáč, Michal; Roche, Kevin Francis; Jurajda, Pavel

2015-01-01

Roč. 45, č. 4 (2015), s. 385-392 ISSN 0137-1592 R&D Projects: GA ČR GBP505/12/G112 Institutional support: RVO:68081766 Keywords : freshwater fish * alien species * introduced species * date of introduction * size-at-maturity * fecundity Subject RIV: EH - Ecology, Behaviour Impact factor: 0.622, year: 2015

Age, growth, and reproductive aspects of the dusky grouper Mycteroperca marginata (Actinopterygii: Epinephelidae in a man-made rocky habitat in southern Brazil

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Elisa Seyboth

2011-01-01

Full Text Available The dusky grouper, Mycteroperca marginata, is an important commercial marine fish that is currently considered an endangered species worldwide and listed as overexploited in Brazil. Although its reproductive biology has been studied elsewhere, no information is available for populations in its southernmost distribution limit on the Brazilian coast. The present work investigates age structure, growth and reproduction of individuals inhabiting a pair of rocky jetties, about 4.5 km long each, located in the mouth of Patos Lagoon in the municipality of Rio Grande, in the southwestern Atlantic Ocean. A total of 130 individuals obtained between February 2007 and May 2009 were analyzed, with total length ranging from 260 to 800 mm. The growth coefficient found in the present study (K: 0.069 was lower than values reported for dusky grouper populations from the Mediterranean Sea (0.087 and southeast Africa (0.09. This difference could be related to higher average water temperatures in these regions compared to the current study site or due to poorer habitat quality in terms of the shelters available for dusky grouper individuals to establish their territories. Microscopic ovarian analyses of individuals during three years of sampling revealed only the occurrence of immature and resting females. The absence of ripe or post-spawning individuals, associated with low GSI values (A garoupa-verdadeira, Mycteroperca marginata, é uma espécie de importância comercial que atualmente é considerada como ameaçada mundialmente e sobre-explotada no Brasil. Embora sua biologia reprodutiva tenha sido estudada em outras regiões, nenhuma informação está disponível sobre populações que habitam o extremo sul da sua distribuição na costa brasileira. O presente trabalho investiga a estrutura de idade, crescimento e reprodução de indivíduos que habitam dois molhes de pedra, com cerca de 4,5 km de extensão cada, localizados na desembocadura da laguna dos Patos no município de Rio Grande, no Atlântico Sudoeste. Foram analisados 130 indivíduos obtidos entre fevereiro de 2007 e maio de 2009, com comprimento total entre 260 e 800 mm. O coeficiente de crescimento no presente estudo (K: 0,069 foi inferior aos valores reportados para oMediterrâneo (0,087 e sudeste da África (0,09. Essa diferença pode estar relacionada a temperaturas médias maiores nessas regiões comparadas ao presente local de estudo ou devido a menor qualidade de habitat em termo de abrigos para os indivíduos de garoupa-verdadeira estabelecerem seus territórios. Análises microscópicas dos ovários dos indivíduos durante esses três anos de amostragens revelaram somente a ocorrência de indivíduos imaturos e fêmeas em repouso. A ausência de indivíduos ovados ou em pós-desova, associada com baixos valores do IGS (<0,2, ao longo de todos os meses de coleta, indica que a garoupa-verdadeira não utiliza esse substrato rochoso construído pelo homem como um local de desova. A estimativa de um L50 de 451,3 mm indica que a maioria dos indivíduos capturados nessa região é imatura. Pressão de pesca sobre indivíduos imaturos, associada com a sua lenta taxa de crescimento e complexo modo reprodutivo, ameaça a sustentabilidade da atual pesca da garoupa-verdadeira na área de estudo.

Phylogeny and biogeographic history of the cyprinid fish genus Carassius (Teleostei: Cyprinidae) with focus on natural and anthropogenic arrivals in Europe

Czech Academy of Sciences Publication Activity Database

Rylková, K.; Kalous, L.; Bohlen, Jörg; Lamatsch, D.K.; Petrtýl, M.

2013-01-01

Roč. 380, č. 383 (2013), s. 13-20 ISSN 0044-8486 R&D Projects: GA ČR GA206/09/1154 Institutional research plan: CEZ:AV0Z5045916 Institutional support: RVO:67985904 Keywords : Carassius auratus complex * Cytochrome b * Distribution Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.828, year: 2013

Contributions to the morphological variation of the common gudgeon, Gobio gobio complex (Teleostei: Cyprinidae), in the upper Vistula drainage (southeast Poland)

Czech Academy of Sciences Publication Activity Database

Nowak, M.; Mendel, Jan; Szczerbik, P.; Klaczak, A.; Mikolajczyk, T.; Ozga, K.; Falowska, B.; Popek, W.

2011-01-01

Roč. 19, č. 1 (2011), s. 37-49 ISSN 1230-6428 R&D Projects: GA ČR GP206/09/P608 Institutional research plan: CEZ:AV0Z60930519 Keywords : Gobioninae * traditional morphometrics * Vistula Subject RIV: EG - Zoology

The GC-heterogeneity of teleost fishes

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Gautier Christian

2008-12-01

Full Text Available Abstract Background One of the most striking features of mammalian and birds chromosomes is the variation in the guanine-cytosine (GC content that occurs over scales of hundreds of kilobases to megabases; this is known as the "isochore" structure. Among other vertebrates the presence of isochores depends upon the taxon; isochore are clearly present in Crocodiles and turtles but fish genome seems very homogeneous on GC content. This has suggested a unique isochore origin after the divergence between Sarcopterygii and Actinopterygii, but before that between Sauropsida and mammals. However during more than 30 years of analysis, isochore characteristics have been studied and many important biological properties have been associated with the isochore structure of human genomes. For instance, the genes are more compact and their density is highest in GC rich isochores. Results This paper shows in teleost fish genomes the existence of "GC segmentation" sharing some of the characteristics of isochores although teleost fish genomes presenting a particular homogeneity in CG content. The entire genomes of T nigroviridis and D rerio are now available, and this has made it possible to check whether a mosaic structure associated with isochore properties can be found in these fishes. In this study, hidden Markov models were trained on fish genes (T nigroviridis and D rerio which were classified by using the isochore class of their human orthologous. A clear segmentation of these genomes was detected. Conclusion The GC content is an excellent indicator of isochores in heterogeneous genomes as mammals. The segmentation we obtained were well correlated with GC content and other properties associated to GC content such as gene density, the number of exons per gene and the length of introns. Therefore, the GC content is the main property that allows the detection of isochore but more biological properties have to be taken into account. This method allows detecting

Duplication of the dystroglycan gene in most branches of teleost fish

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Giardina Bruno

2007-05-01

Full Text Available Abstract Background The dystroglycan (DG complex is a major non-integrin cell adhesion system whose multiple biological roles involve, among others, skeletal muscle stability, embryonic development and synapse maturation. DG is composed of two subunits: α-DG, extracellular and highly glycosylated, and the transmembrane β-DG, linking the cytoskeleton to the surrounding basement membrane in a wide variety of tissues. A single copy of the DG gene (DAG1 has been identified so far in humans and other mammals, encoding for a precursor protein which is post-translationally cleaved to liberate the two DG subunits. Similarly, D. rerio (zebrafish seems to have a single copy of DAG1, whose removal was shown to cause a severe dystrophic phenotype in adult animals, although it is known that during evolution, due to a whole genome duplication (WGD event, many teleost fish acquired multiple copies of several genes (paralogues. Results Data mining of pufferfish (T. nigroviridis and T. rubripes and other teleost fish (O. latipes and G. aculeatus available nucleotide sequences revealed the presence of two functional paralogous DG sequences. RT-PCR analysis proved that both the DG sequences are transcribed in T. nigroviridis. One of the two DG sequences harbours an additional mini-intronic sequence, 137 bp long, interrupting the uncomplicated exon-intron-exon pattern displayed by DAG1 in mammals and D. rerio. A similar scenario emerged also in D. labrax (sea bass, from whose genome we have cloned and sequenced a new DG sequence that also harbours a shorter additional intronic sequence of 116 bp. Western blot analysis confirmed the presence of DG protein products in all the species analysed including two teleost Antarctic species (T. bernacchii and C. hamatus. Conclusion Our evolutionary analysis has shown that the whole-genome duplication event in the Class Actinopterygii (ray-finned fish involved also DAG1. We unravelled new important molecular genetic details

Coastal rocky reef fishes of Santa Catarina's northern islands, Brazil

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Johnatas Adelir Alves

2015-11-01

Full Text Available The coast of the state of Santa Catarina only has non-biogenic reefs, i.e. rocky and artificial reefs, and is considered the geographic south limit for many reef fish species. At present the diversity of organisms associated with reef environments is threatened. This study aimed to record the number of families and species of reef fish fauna of the north coast of the state of Santa Catarina. The data were collected through underwater visual census performed on Graças archipelago (26°12'S /48º29'W, Tamboretes archipelago (26°22'S/48°31'W and Barra do Sul islands (26°27'S/48º35'W. A total of 166 species was observed (6 elasmobranchii and 160 actinopterygii belonging to 66 families. The families with more species richness were Carangidae (16, Epinephelidae (9, Blenidae (8, Serranidae (7, Haemulidae (6, Sparidae (6 Tetraodontidae (6, Labridae-Scarini (5, Labrisomidae (5 Pomacentridae (5, Lutjanidae (5 and Muraenidae (5. This study add to the current published list, new 115 species, including new occurrences (e.g. Chromis limbata, and some endemic (e.g. Sparisoma amplum, exotic (e.g. Omobranchus punctatus, endangered (e.g. Hippocampus erectus and overexploited (e.g. Lutjanus analis species. Twenty one species are present in the IUCN’s list, twelve in the IBAMA’s list and four in the local list. All elasmobranchii recorded here are considered threatened species, like the brazilian guitarfish (Rhinobatos horkelii, which appears in three red lists, and it is considered critically endangered. All species of Epinephelidae are mentioned in the list of risk categories of the IUCN and five are cited as overexploited or threatened with overexploitation by IBAMA. Among Epinephelidae, the goliath grouper (Epinephelus itajara, is present in all red lists and has specific protection rules in Brazil. The gathered information will allow to take appropriate conservation measures, such as the establishment of marine protected areas, monitoring of fishing

Novel SINE families from salmons validate Parahucho (Salmonidae) as a distinct genus and give evidence that SINEs can incorporate LINE-related 3'-tails of other SINEs.

Science.gov (United States)

Matveev, Vitaliy; Nishihara, Hidenori; Okada, Norihiro

2007-08-01

Short interspersed elements (SINEs) constitute a group of retroposons propagating in the genome via a mechanism of reverse transcription, in which they depend on the enzymatic machinery of long retroposons (LINEs). Over 70 SINE families have been described to date from the genomes of various eukaryotes. Here, we characterize two novel SINEs from salmons (Actinopterygii: Salmonoidei). The first family, termed SlmI, was shown to be widespread among all genera of the suborder. These SINEs have a tRNA(Leu)-related promoter region at their 5'-end, a unique central conserved domain with a subfamily-specific region, and an end with RSg-1-LINE-derived 3'-terminus preceding the A/T-rich tail. The same LINE-related segment is also shared by two other salmonid SINEs: HpaI and OS-SINE1. The structural peculiarities and overall sequence identity of the SlmI 3'-terminus suggest that it has been acquired from HpaI SINEs but not directly from the partner LINE. This region plays a crucial role in the process of retrotransposition of short interspersed elements, and the case of its SINE-to-SINE transmission is the first recorded to date. Possible scenarios and potential evolutionary implications of the observed interaction between short retroposons are discussed. Apart from the above, we found a copy of the SlmI SINE in the GenBank entry for the blood fluke, Schistosoma japonicum (Trematoda: Strigeiformes) -- a trematode causing one of the most important human helminth infections, with its genome known to host other groups of salmonoid retroposons. In the present article, we suggest our views with regard to possible ways in which such an intensive horizontal transfer of salmonoid retroposons to the schistosomal genome occurs. The second novel SINE family, termed SlmII, originates from one of the SlmI subfamilies, with which it shares the same tRNA-related region, central domain, and a part of RSg-1-derived segment, but has a different 3'-tail of unidentified origin. Its distribution

Response of fish communities to cropland density and natural environmental setting in the Eastern Highland Rim Ecoregion of the lower Tennessee River basin, Alabama and Tennessee, 1999

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Powell, Jeffrey R.

2003-01-01

Response of fish communities to cropland density and natural environmental setting were evaluated at 20 streams in the Eastern Highland Rim Ecoregion of the lower Tennessee River Basin during the spring of 1999. Sites were selected to represent a gradient of cropland densities in basins draining about 30 to 100 square miles. Fish communities were sampled by using a combination of seining and electrofishing techniques. A total of 10,550 individual fish, representing 63 species and 15 families, were collected during the study and included the families Cyprinidae (minnows), 18 species; Percidae (perch and darters), 12 species; and Centrarchidae (sunfish), 12 species. Assessments of environmental characteristics, including instream and terrestrial data and land-cover data, were conducted for each site. Instream measurements, such as depth, velocity, substrate type, and embeddedness, were recorded at 3 points across 11 equidistant transects at each site. Terrestrial measurements, such as bank angle, canopy angle, and canopy closure percentage, were made along the stream bank and midchannel areas. Water-quality data collected included pH, dissolved oxygen, specific conductivity, water temperature, nutrients, and fecal-indicator bacteria. Substrate embeddedness was the only variable correlated with both cropland density and fish communities (as characterized by ordination scores and several community level metrics). Multivariate and nonparametric correlation techniques were used to evaluate fish-community responses to physical and chemical factors associated with a cropland-density gradient, where the gradient was defined as the percentage of the basin in row crops. Principal component analysis and correspondence analysis suggest that the Eastern Highland Rim Ecoregion is composed of three subgroups of sites based on inherent physical and biological differences. Data for the subgroup containing the largest number of sites were then re-analyzed, revealing that several

A revision of the Australian species of Trimma (Actinopterygii, Gobiidae), with descriptions of six new species and redescriptions of twenty-three valid species.

Science.gov (United States)

Winterbottom, Richard; Hoese, Douglass F

2015-03-17

The gobiid genus Trimma currently contains 75 valid species, with another 20-30 known but undescribed species. There are 29 species in Australian waters (six undescribed). This paper describes the six new species, and provides redescriptions of most of the 23 previously described species known from the region, as well as a key for all the species. The six new species are: T. insularum (endemic to Cocos (Keeling) Islands), T. kitrinum (Fiji to Great Barrier Reef), T. meristum (Cape York to the Bismark Archipelago and Fiji), T. pentherum (Great Barrier Reef to Fiji and the South-West Islands of Palau), T. readerae (Australia to Japan), and T. xanthum (Palau to Fiji, Great Barrier Reef to Christmas Island). The following 23 species have been recorded from Australian waters, and most are redescribed here: T. anaima (Comores to Fiji), T. annosum (Maldives to the Phoenix Islands, Taiwan to the southern Great Barrier Reef), T. benjamini (southern Vietnam to the Marshall Islands, Samoa and southern Barrier Reef), T. caesiura (Ryukyus through the Marshall Islands to Samoa and Elizabeth Reef on the Lord Howe Rise), T. capostriatum (New Caledonia to eastern Australia and Papua New Guinea), T. maiandros (Java to the Ryukyus, Marshalls to Great Barrier Reef), T. emeryi (Comores to Ryukyus and Samoa), T. fangi (western South China Sea through to the Solomons), T. flavatrum (Ryukyu Islands to Western Australia and Samoa), T. hoesei (Chagos Archipelago, central Indian Ocean to Palau and Solomons), T. lantana (Australia, Solomons, northern New Guinea, South-West Islands of Palau), T. macrophthalmus (Ryukyu Islands to Cocos (Keeling) Islands and Samoa), T. milta (Taiwan to Western Australia, Society Islands and Hawaii), T. nasa (Sumbawa, Indonesia to Fiji), T. necopinum (northern tip of Cape York to Sydney), T. nomurai (Japan to northern Australia and New Caledonia), T. okinawae (western Thailand to Japan and the Phoenix Islands, north-west Australia to the Great Barrier Reef), T. preclarum (Palau to Fiji, Great Barrier Reef), T. stobbsi (Maldives to New Caledonia), T. striatum (Maldives to Palau, to northern Australia), T. taylori (Red Sea to Hawaii and Society Islands), T. tevegae (Red Sea to Ryukyu Islands, Marshall Islands to Samoa), and T. unisquame (Comores to Hawaii and Easter Island).

Role of the invasive Chinese sleeper Perccottus glenii (Actinopterygii: Odontobutidae) in the distribution of fish parasites in Europe: New data and a review

Czech Academy of Sciences Publication Activity Database

Kvach, Yuriy; Kutsokon, Y.; Stepien, C. A.; Markovych, M.

2016-01-01

Roč. 71, č. 8 (2016), s. 941-951 ISSN 0006-3088 R&D Projects: GA ČR(CZ) GBP505/12/G112 Institutional support: RVO:68081766 Keywords : Chinese sleeper * enemy release hypothesis * invasive species * parasites * Perccottus glenii Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine Impact factor: 0.759, year: 2016

The complete mitochondrial genome of the Chinese hook snout carp Opsariichthys bidens (Actinopterygii: Cypriniformes) and an alternative pattern of mitogenomic evolution in vertebrate

DEFF Research Database (Denmark)

Wang, Xuzhen; Wang, Jun; He, Shunping

2007-01-01

The complete mitochondrial genome sequence of the Chinese hook snout carp, Opsariichthys bidens, was newly determined using the long and accurate polymerase chain reaction method. The 16,611-nucleotide mitogenome contains 13 protein-coding genes, two rRNA genes (12S, 16S), 22 tRNA genes, and a no......The complete mitochondrial genome sequence of the Chinese hook snout carp, Opsariichthys bidens, was newly determined using the long and accurate polymerase chain reaction method. The 16,611-nucleotide mitogenome contains 13 protein-coding genes, two rRNA genes (12S, 16S), 22 tRNA genes...

Finding of Pseudobacciger harengulae (Digenea, Faustulidae) in the Mediterranean Horse Mackerel, Trachurus mediterraneus (Actinopterygii, Carangidae), from the Gulf of Odessa, Black Sea, Ukraine

Czech Academy of Sciences Publication Activity Database

Hulak, B.; Kvach, Yuriy

2018-01-01

Roč. 52, č. 1 (2018), s. 47-52 ISSN 0084-5604 R&D Projects: GA ČR(CZ) GBP505/12/G112 Institutional support: RVO:68081766 Keywords : Black Sea * Digenea * Pseudobacciger * Trachurus * new records * new host Subject RIV: EG - Zoology OBOR OECD: Zoology

THE NEEDS AND IMPORTANCE OF FATTY ACIDS IN THE NUTRITION OF FISH

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Ivan Bogut

1996-09-01

Full Text Available According to the needs for the essential fatty acids, the fish can be classified in three groups: For the fish from Salrrwnidae family (Oncorhynhcus kisutch, O. keta, O. nerka and O. tshawytscha the essential is 18: 3 in the quantity of 1%. The same effect in regard to growth and nutrition coefficient can be achieved with the addition of highly unsaturated fatty acids (HUF A ω 3 rows in the quantity of 9. 5%. The Californian trout (Oncorhynhcus mykiss is needier than the other fish for 20: 5 ω 3 and 22: 6 ω 3. Its needs is 1%. For the fish from Coregonidae family (Coregonus lavaretus, C. peled and C. nasus the essential is 18: 3 ω 3 in the quantity of 1% or the combination 20: 5 ω 3 (o. 25% and 22: 6 ω 3 (O. 25%. Fresh-water fish from the Anguillidae family (Anguilla anguilla and A. japonicai, Cyprinidae family (Cyprinus carpio, Ictaluridae family (lctalurus punctatus have needs for 18: 2 ω 3 in the quantity of 1-2% or RUFA O. 5-1%. The fatty acids ω 6 row (18: 2 ω 6 or 20: 4 ω 6 are important for the fish from Cichlidae family (Tilapia zillii and Orechromis nilaticus in the quantity of 1%. Te sea fish Rhombus maximus and Pagnus major achieve the best growth when they receive HUFA ω 3 row up to 2% together with the food. Rancid ointment, eruk-acid from the rape oil, gosipol and cyclophrophenoid acid from the cotton seeds oil if added to fish food cause the reduced growth and pathologic changes on fish liver, kidneys, heart and gills.

Juvenile bottlenecks and salinity shape grey mullet assemblages in Mediterranean estuaries

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Cardona, Luis; Hereu, Bernat; Torras, Xavier

2008-05-01

Previous research has suggested that competitive bottlenecks may exist for the Mediterranean grey mullets (Osteichthyes, Mugilidae) at the fry stage with the exotic Cyprinus carpio (Osteichthyes, Cyprinidae) playing a central role. As a consequence, the structure of grey mullet assemblages at later stages is thought to reflect previous competition as well as differences in osmoregulatory skills. This paper tests that hypothesis by examining four predictions about the relative abundance of five grey mullet species in 42 Western Mediterranean estuary sites from three areas (Aiguamolls de l'Empordà, Ebro Delta and Minorca) differing in the salinity level and occurrence of C. carpio. Field data confirmed the predictions as: (1) Liza aurata and Mugil cephalus were scarce everywhere and never dominated the assemblage; (2) Liza saliens dominated the assemblage where the salinity level was higher than 13; (3) Liza ramado always dominated the assemblage where the salinity level was lower than 13 and C. carpio was present; and (4) Chelon labrosus dominated the assemblage only where the salinity level was lower than 13 and C. carpio was absent. The catch per unit effort of C. labrosus of any size was smaller in the presence of C. carpio than where it had not been introduced, which is in agreement with the juvenile competitive bottleneck hypothesis. Discriminant analysis confirmed that the assemblage structure was linked to the salinity level and the occurrence of C. carpio for both early juveniles and late juveniles as well as adults. The data reported here reveal that the structure of grey mullet assemblages inhabiting Mediterranean estuaries is determined by salinity and competitive interactions at the fry stage.

Genomic structure and promoter functional analysis of GnRH3 gene in large yellow croaker (Larimichthys crocea).

Science.gov (United States)

Huang, Wei; Zhang, Jianshe; Liao, Zhi; Lv, Zhenming; Wu, Huifei; Zhu, Aiyi; Wu, Changwen

2016-01-15

Gonadotropin-releasing hormone III (GnRH3) is considered to be a key neurohormone in fish reproduction control. In the present study, the cDNA and genomic sequences of GnRH3 were cloned and characterized from large yellow croaker Larimichthys crocea. The cDNA encoded a protein of 99 amino acids with four functional motifs. The full-length genome sequence was composed of 3797 nucleotides, including four exons and three introns. Higher identities of amino acid sequences and conserved exon-intron organizations were found between LcGnRH3 and other GnRH3 genes. In addition, some special features of the sequences were detected in partial species. For example, two specific residues (V and A) were found in the family Sciaenidae, and the unique 75-72 bp type of the open reading frame 2 and 3 existed in the family Cyprinidae. Analysis of the 2576 bp promoter fragment of LcGnRH3 showed a number of transcription factor binding sites, such as AP1, CREB, GATA-1, HSF, FOXA2, and FOXL1. Promoter functional analysis using an EGFP reporter fusion in zebrafish larvae presented positive signals in the brain, including the olfactory region, the terminal nerve ganglion, the telencephalon, and the hypothalamus. The expression pattern was generally consistent with the endogenous GnRH3 GFP-expressing transgenic zebrafish lines, but the details were different. These results indicate that the structure and function of LcGnRH3 are generally similar to the other teleost GnRH3 genes, but there exist some distinctions among them. Copyright © 2015 Elsevier B.V. All rights reserved.

Combined effects of hydrologic alteration and cyprinid fish in mediating biogeochemical processes in a Mediterranean stream.

Science.gov (United States)

Rubio-Gracia, Francesc; Almeida, David; Bonet, Berta; Casals, Frederic; Espinosa, Carmen; Flecker, Alexander S; García-Berthou, Emili; Martí, Eugènia; Tuulaikhuu, Baigal-Amar; Vila-Gispert, Anna; Zamora, Lluis; Guasch, Helena

2017-12-01

Flow regimes are important drivers of both stream community and biogeochemical processes. However, the interplay between community and biogeochemical responses under different flow regimes in streams is less understood. In this study, we investigated the structural and functional responses of periphyton and macroinvertebrates to different densities of the Mediterranean barbel (Barbus meridionalis, Cyprinidae) in two stream reaches differing in flow regime. The study was conducted in Llémena Stream, a small calcareous Mediterranean stream with high nutrient levels. We selected a reach with permanent flow (permanent reach) and another subjected to flow regulation (regulated reach) with periods of flow intermittency. At each reach, we used in situ cages to generate 3 levels of fish density. Cages with 10 barbels were used to simulate high fish density (>7indm -2 ); cages with open sides were used as controls (i.e. exposed to actual fish densities of each stream reach) thus having low fish density; and those with no fish were used to simulate the disappearance of fish that occurs with stream drying. Differences in fish density did not cause significant changes in periphyton biomass and macroinvertebrate density. However, phosphate uptake by periphyton was enhanced in treatments lacking fish in the regulated reach with intermittent flow but not in the permanent reach, suggesting that hydrologic alteration hampers the ability of biotic communities to compensate for the absence of fish. This study indicates that fish density can mediate the effects of anthropogenic alterations such as flow intermittence derived from hydrologic regulation on stream benthic communities and associated biogeochemical processes, at least in eutrophic streams. Copyright © 2017. Published by Elsevier B.V.

Prevalence and Intensity of Clonorchis sinensis Metacercariae in Freshwater Fish from Wicheon Stream in Gunwi-gun, Gyeongsangbuk-do, Korea

Science.gov (United States)

Sohn, Woon-Mok; Na, Byoung-Kuk; Cho, Shin-Hyeong; Ju, Jung-Won; Son, Dong-Chul

2018-01-01

The infection status of Clonorchis sinensis metacercariae (CsMc) was examined in freshwater fish from a highly prevalent site, Wicheon (a branch of Nakdong-gang), which is located in Gunwi-gun, Gyeongsangbuk-do, the Republic of Korea. Total 1,162 fish in 32 species were examined by the artificial digestion method through 6 years. CsMc were detected in 720 (67.5%) out of 1,067 fish (26 spp.) and their density was 610 per fish infected. In the susceptible gobioninid fish group, i.e., Pungtungia herzi, Squalidus gracilis majimae, Squalidus japonicus coreanus, Sarcocheilichthys variegatus wakiyae and Pseudorasbora parva, all of 323 fish were infected with an average of 1,310 CsMc. Total 23 (95.8%) gobioninid fish, i.e., Pseudogobio esocinus, Abbottina springeri, Hemibarbus longirostris, Microphysogobio koreensis, and Microphysogobio jeoni, were infected with 127 CsMc in average. In the acheilognathinid fish (bitterlings) group, the prevalence was 77.0%, and the density was 50 CsMc per fish infected. In the rasborinid fish (chubs) group, i.e., Zacco platypus, Zacco temminckii, Zacco koreanus, and Opsariichthys uncirostris amurensis, 147 (36.5%) out of 403 fish examined were infected with 15 CsMc in average. The susceptibility indices of CsMc were 412 in the overall positive fish group, 1,310 in the gobioninid group-1, 122 in the gobioninid group-2, 38.5 in the acheilognathinid group, and 5.5 in the rasborinid fish group. Conclusively, it was confirmed that CsMc are highly prevalent in fish from Wicheon, and their infection tendency varied according to the subfamily groups in Cyprinidae fish hosts. PMID:29529849

Phytoplankton response to fish-induced environmental changes in a temperate shallow pond-type lake

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Napiórkowska-Krzebietke Agnieszka

2017-12-01

Full Text Available Since 1967, the temperate, shallow, pond-type Lake Warniak has been subjected to different biomanipulation methods including the introduction of common carp, Cyprinus carpio L., grass carp, Ctenopharyngodon idella (Val., silver carp, Hypophthalmichthys molitrix (Val., and bighead carp, Hypophthalmichthys nobilis (Richardson and then their removal in an effort to control macrophytes and phytoplankton. Recently, pilot stocking with predatory fish, particularly pike, Esox lucius L., has also been conducted. Hence, an examination of the long-term response patterns of phytoplankton to multiple fish-induced stressors was undertaken. In recent years, Chara domination (2000-2004 has helped to stabilize a clear-water state, high/good ecological status, and meso-eutrophic conditions. After the disappearance of Charales in 2004, the rapid, unstable changes in phytoplankton biomass, structure, and biodiversity suggested a shift toward a turbid-water state. As a result, the phytoplankton assemblages changed from those dominated by cryptophytes Y+X2+X1+LO (2000-2004 through those dominated by cyanobacteria K (2005-2008, dinoflagellates LO+Y (2009-2011, and cryptophytes Y+LO+F+X2 (2012, to those dominated by diatoms D+K+P+A (2013-2014 with representative taxa that occur in nutrient-rich and/or nutrient-poor water bodies. The 1967-2014 changes indicated that four periods, two with clear-water state and two with turbid-water state, alternately, one after the other, resulted from different fish pressure. Higher autochthonous fish biomass was usually accompanied by lower phytoplankton biomass. In contrast, the introduction of Cyprinidae fish had a stimulating effect on summer phytoplankton dominated by cyanobateria. Among the nutrients, only phosphorus played an important role.

Age and growth of European barbel Barbus barbus (Cyprinidae in the small, mesotrophic River Lee and relative to other populations in England

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Vilizzi L.

2013-08-01

Full Text Available Suspected of being in decline, the European barbel Barbus barbus population of the River Lee, a heavily-modified river in South East England, has been the subject of investigations to identify factors associated with perceived population decreases. Population surveys between 1995 and 1999 captured a total of 912 individuals, and standard length (SL frequency analyses between years suggested that the population decline was not related to juvenile recruitment but rather to a recruitment bottleneck in fish 300–340 mm SL. This bottleneck probably results from insufficient available habitat suitable to this size class. Of the sampled fish, scales were removed from 764 and were used in a scale ageing exercise among three researchers. Analyses of their independent age estimates revealed variable interpretations, which arose from uncertainties relating to the difficulty of analysing scale patterns from relatively large, slow-growing fish. Nevertheless, error was within published acceptable margins, and age estimates revealed B. barbus in the river to age 10 years, lower than in many UK rivers. The SL-at-age growth curve was characterised by very fast growth in the initial years of life. Thus, the causal factors in the decline of this B. barbus population appear to have been in the adult life-stage habitat and were likely related to the loss of longitudinal connectivity, mainly due to the presence of water retention structures. River and aquatic ecosystem remediation strategies should therefore focus on enhancing longitudinal connectivity in conjunction with the ongoing improvement of water quality and ecosystem integrity.

Rapid range expansion of the "whitefin" gudgeon Romanogobio cf. belingi (Teleostei: Cyprinidae) in a lowland tributary of the Vistula River (Southeastern Poland)

Czech Academy of Sciences Publication Activity Database

Nowak, M.; Klaczak, A.; Szczerbik, P.; Mendel, Jan; Popek, W.

2013-01-01

Roč. 49, č. 4 (2013), s. 319-326 ISSN 0003-4088 R&D Projects: GA ČR GP206/09/P608 Institutional support: RVO:68081766 Keywords : faunistic * Gobioninae * ichthyofauna monitoring * population dynamics * rare species Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.036, year: 2013

A new monozoic tapeworm, Lobulovarium longiovatum n. g., n. sp. (Cestoda: Caryophyllidea), from barbs Puntius spp. (Teleostei: Cyprinidae) in the Indomalayan region

Czech Academy of Sciences Publication Activity Database

Oros, Mikuláš; Ash, Anirban; Brabec, Jan; Kar, P. K.; Scholz, Tomáš

2012-01-01

Roč. 83, č. 1 (2012), s. 1-13 ISSN 0165-5752 R&D Projects: GA ČR GD206/09/H026; GA ČR GA524/08/0885; GA ČR GBP505/12/G112 Institutional research plan: CEZ:AV0Z60220518 Keywords : MIXED MODELS * SILURIFORMES * PARASITES * IDENTIFICATION * CATOSTOMIDAE * MORPHOLOGY * CESTOIDEA * REVISION * SOPHORE * PISCES Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine Impact factor: 1.260, year: 2012 http://link.springer.com/article/10.1007%2Fs11230-012-9367-6

The effect of hybridization on fish physiology, immunity and blood biochemistry: A case study in hybridizing Cyprinus carpio and Carassius gibelio (Cyprinidae)

Czech Academy of Sciences Publication Activity Database

Šimková, A.; Vojtek, L.; Halačka, Karel; Hyršl, P.; Vetešník, Lukáš

2015-01-01

Roč. 435, č. 1 (2015), s. 381-389 ISSN 0044-8486 R&D Projects: GA ČR GAP505/12/0375 Institutional support: RVO:68081766 Keywords : Hybridization * Cyprinids * Blood biochemistry * Hematology * Immunity Subject RIV: EG - Zoology Impact factor: 1.893, year: 2015

Hepatocyte nuclear structure and subcellular distribution of copper in zebrafish Brachydanio rerio and roach Rutilus rutilus (Teleostei, Cyprinidae) exposed to copper sulphate

Energy Technology Data Exchange (ETDEWEB)

Paris-Palacios, Severine [Universite de Reims Champagne-Ardenne (URCA), UFR Sciences Exactes et Naturelles, Laboratoire d' Eco-Toxicologie, Institut International de Recherche sur les Ions Metalliques, B.P. 1039-51687 Reims cedex 2 (France)]. E-mail: severine.paris@univ-reims.fr; Biagianti-Risbourg, Sylvie [Universite de Reims Champagne-Ardenne (URCA), UFR Sciences Exactes et Naturelles, Laboratoire d' Eco-Toxicologie, Institut International de Recherche sur les Ions Metalliques, B.P. 1039-51687 Reims cedex 2 (France)]. E-mail: sylvie.biagianti@univ-reims.fr

2006-05-10

Copper is a trace element essential to life, but also a heavy metal with toxic effect clearly demonstrated. Cu induced perturbations in fish liver are well documented but the variability of the reported results is large. In this study two cyprinids, zebrafish and roach, were exposed to copper. Reported histocytological changes are either adaptative or degenerative depending on fish species, concentration of metal, and duration of exposure. Hepatic subcellular distribution of copper was determined by X-ray microanalysis in control and Cu-exposed roach and zebrafish. Sublethal copper sulphate contamination induced the development of a particular nucleolar alteration forming a network or honeycomb like structure in liver. This perturbation is observable in almost all the hepatocytes of zebrafish and roach exposed to copper for a minimum of 4 days of exposure. It seemed to concern more precisely the pars fibrosa. X-ray microanalysis showed that the appearance of network nucleolus was in relation to a Cu accumulation. Cu deposit was well located in the network as pars granulosa and nucloplasm showed very lower metal concentrations. The origin and consequence of network structure in nucleolus was discussed.

Effects of Temperature on Auditory Sensitivity in Eurythermal Fishes: Common Carp Cyprinus carpio (Family Cyprinidae) versus Wels Catfish Silurus glanis (Family Siluridae)

Science.gov (United States)

Maiditsch, Isabelle Pia; Ladich, Friedrich

2014-01-01

Background In ectothermal animals such as fish, -temperature affects physiological and metabolic processes. This includes sensory organs such as the auditory system. The reported effects of temperature on hearing in eurythermal otophysines are contradictory. We therefore investigated the effect on the auditory system in species representing two different orders. Methodology/Principal Findings Hearing sensitivity was determined using the auditory evoked potentials (AEP) recording technique. Auditory sensitivity and latency in response to clicks were measured in the common carp Cyprinus carpio (order Cypriniformes) and the Wels catfish Silurus glanis (order Siluriformes) after acclimating fish for at least three weeks to two different water temperatures (15°C, 25°C and again 15°C). Hearing sensitivity increased with temperature in both species. Best hearing was detected between 0.3 and 1 kHz at both temperatures. The maximum increase occurred at 0.8 kHz (7.8 dB) in C. carpio and at 0.5 kHz (10.3 dB) in S. glanis. The improvement differed between species and was in particular more pronounced in the catfish at 4 kHz. The latency in response to single clicks was measured from the onset of the sound stimulus to the most constant positive peak of the AEP. The latency decreased at the higher temperature in both species by 0.37 ms on average. Conclusions/Significance The current study shows that higher temperature improves hearing (lower thresholds, shorter latencies) in eurythermal species from different orders of otophysines. Differences in threshold shifts between eurythermal species seem to reflect differences in absolute sensitivity at higher frequencies and they furthermore indicate differences to stenothermal (tropical) species. PMID:25255456

Feeding behavior of black carp Mylopharyngodon piceus (Pisces: Cyprinidae) on fry of other fish species and trematode transmitting snail species

DEFF Research Database (Denmark)

Hung, Nguyen Manh; The, Dang Tat; Stauffer, Jay R.

2014-01-01

Fish raised in aquaculture ponds may get infected with fishborne zoonotic trematodes (FZT) during the nursing stage. Freshwater snails serve as intermediate hosts for FZT and we wanted to explore the possibility of controlling snails by stocking nursery ponds with a few juvenile specimens...

Hepatocyte nuclear structure and subcellular distribution of copper in zebrafish Brachydanio rerio and roach Rutilus rutilus (Teleostei, Cyprinidae) exposed to copper sulphate

International Nuclear Information System (INIS)

Paris-Palacios, Severine; Biagianti-Risbourg, Sylvie

2006-01-01

Copper is a trace element essential to life, but also a heavy metal with toxic effect clearly demonstrated. Cu induced perturbations in fish liver are well documented but the variability of the reported results is large. In this study two cyprinids, zebrafish and roach, were exposed to copper. Reported histocytological changes are either adaptative or degenerative depending on fish species, concentration of metal, and duration of exposure. Hepatic subcellular distribution of copper was determined by X-ray microanalysis in control and Cu-exposed roach and zebrafish. Sublethal copper sulphate contamination induced the development of a particular nucleolar alteration forming a network or honeycomb like structure in liver. This perturbation is observable in almost all the hepatocytes of zebrafish and roach exposed to copper for a minimum of 4 days of exposure. It seemed to concern more precisely the pars fibrosa. X-ray microanalysis showed that the appearance of network nucleolus was in relation to a Cu accumulation. Cu deposit was well located in the network as pars granulosa and nucloplasm showed very lower metal concentrations. The origin and consequence of network structure in nucleolus was discussed

Fuzzy knowledge bases integration based on ontology

OpenAIRE

Ternovoy, Maksym; Shtogrina, Olena

2012-01-01

the paper describes the approach for fuzzy knowledge bases integration with the usage of ontology. This approach is based on metadata-base usage for integration of different knowledge bases with common ontology. The design process of metadata-base is described.

Foundation: Transforming data bases into knowledge bases

Science.gov (United States)

Purves, R. B.; Carnes, James R.; Cutts, Dannie E.

1987-01-01

One approach to transforming information stored in relational data bases into knowledge based representations and back again is described. This system, called Foundation, allows knowledge bases to take advantage of vast amounts of pre-existing data. A benefit of this approach is inspection, and even population, of data bases through an intelligent knowledge-based front-end.

Case-based reasoning: The marriage of knowledge base and data base

Science.gov (United States)

Pulaski, Kirt; Casadaban, Cyprian

1988-01-01

The coupling of data and knowledge has a synergistic effect when building an intelligent data base. The goal is to integrate the data and knowledge almost to the point of indistinguishability, permitting them to be used interchangeably. Examples given in this paper suggest that Case-Based Reasoning is a more integrated way to link data and knowledge than pure rule-based reasoning.

Growth performance and feed utilization of keureling fish Tor tambra (Cyprinidae fed formulated diet supplemented with enhanced probiotic. [version 1; referees: 2 approved

Directory of Open Access Journals (Sweden)

Zainal A. Muchlisin

2017-02-01

Full Text Available Background The objective of the present study was to determine the optimum dosage of probiotic in the diet of keureling fish (Tor tambra fry. Methods Lactobacillus casei from Yakult® was used as a starter, and enhanced with Curcuma xanthorrhiza, Kaempferia galanga and molasses. The mixture was fermented for 7 days prior to use as probiotic in a formulated diet containing 30% crude protein. Four levels of probiotic dosage; 0 ml kg-1 (control, 5 ml kg-1, 10 ml kg-1 and 15 ml kg-1 were tested in this study. The fish was fed twice a day at 08.00 AM and 06.00 PM at the ration of 5% body weight for 80 days. Results The results showed that growth performance and feed efficiency increased with increasing probiotic dosage in the diet from control (no probiotic to 10 ml kg-1 of probiotic dosage and then decreased when the dosage was increased up to 15 ml kg-1. Conclusions The best values for all measured parameters were recorded at the dosage of 10 ml kg-1. Therefore, it was concluded that the optimum dosage of enhanced probiotic for T. tambra fry was 10 ml kg-1 of feed.

Genetic variation of wild and hatchery populations of the catla Indian major carp (Catla catla Hamilton 1822: Cypriniformes, Cyprinidae revealed by RAPD markers

Directory of Open Access Journals (Sweden)

S.M. Zakiur Rahman

2009-01-01

Full Text Available Genetic variation is a key component for improving a stock through selective breeding programs. Randomly amplified polymorphic DNA (RAPD markers were used to assess genetic variation in three wild population of the catla carp (Catla catla Hamilton 1822 in the Halda, Jamuna and Padma rivers and one hatchery population in Bangladesh. Five decamer random primers were used to amplify RAPD markers from 30 fish from each population. Thirty of the 55 scorable bands were polymorphic, indicating some degree of genetic variation in all the populations. The proportion of polymorphic loci and gene diversity values reflected a relatively higher level of genetic variation in the Halda population. Sixteen of the 30 polymorphic loci showed a significant (p < 0.05, p < 0.01, p < 0.001 departure from homogeneity and the F ST values in the different populations indicated some degree of genetic differentiation in the population pairs. Estimated genetic distances between populations were directly correlated with geographical distances. The unweighted pair group method with averages (UPGMA dendrogram showed two clusters, the Halda population forming one cluster and the other populations the second cluster. Genetic variation of C. catla is a useful trait for developing a good management strategy for maintaining genetic quality of the species.

The impact of Manjil and Tarik dams (Sefidroud River, southern Caspian Sea basin on morphological traits of Siah Mahi Capoeta gracilis (Pisces: Cyprinidae

Directory of Open Access Journals (Sweden)

Adeleh Heidari

2013-08-01

Full Text Available It has been postulated that the building of the Manjil and Tarik dams on Sefidroud River has led to the body shape variation of Capoeta gracilis in up- and downstream populations due to the isolation. In this study, Geometric morphometric approach was used to explore body shape variations of Capoeta gracilis populations in up- and downstream Manjil and Tarik dams in Sefidroud River from south of the Caspian Sea basin. The shape of 90 individuals from three sampling sites was extracted by recording the 2-D coordinates of 13 landmark points. PCA, CVA, DFA and CA analysis were used to examine shape differences among the populations. The significant differences were found among the shape of the populations and these differences were observed in the snout, the caudal peduncle and head. The present study indicated the body shape differences in the populations of Capoeta gracilis in the Sefidroud River across the Manjil and Tarik dams, probably due to the dam construction showing anthropogenic transformation of rivers influences body shape in an aquatic organism.

Comparison of Lethal Concentrations (LC50-96 H of Cdcl2, Crcl3, and Pb (NO32 in Common Carp (Cyprinus carpio and Sutchi Catfish (Pangasius Hypophthalmus

Directory of Open Access Journals (Sweden)

Zeynab Abedi

2012-11-01

Full Text Available Background: The present study compared lethal concentrations (LC50-96 h of CdCl2, CrCl3, and Pb (NO32 between two scaled and scaleless freshwater fish species: Cyprinus carpio (Cyprinidae and Pangasius hypophthalmus (Pangasiidae. Methods: The experimental fishes were obtained from fish markets/ponds with average lengths and weights of approximately 11.68 ±1.92 and 9.8±1.9 cm, and 25.92±6.3 and 18.61±3.22 g for C. carpio and P. hypophthalmus, respectively. The fishes were exposed to different concentrations of cadmium (Cd (0, 10, 20, 40, 80, 100, 120, 200 mg L−1 lead (Pb (0, 20, 40, 50, 60, 90, 150 mg L−1, and chromium (Cr (0, 5, 10, 20, 30, 40 mg L−1 for 96 h. Physicochemical parameters, such as dissolved oxygen, pH, and temperature of aquaria as well as mortality rate of the fishes, were monitored daily. Results: The 50% lethal concentrations (LC50-96 h of CdCl2, CrCl3, and Pb (NO32 for P. hypophthalmus were found at 64.89, 7.46, and 48.06 mg L−1, and those of CdCl 2, CrCl 3, Pb (NO32 for C. carpio were detected at 84.8, 17.05, and 77.33 mg L−1. The ratios of heavy metal toxicity factors (TF were greater for common carp compared to those for the catfish. Conclusion: Our preliminary findings suggest that common carp C. carpio with higher LC50 (and LC100 values appears to be more tolerant to heavy metals exposure than the catfish (P. hypophthalmus. This may be due to the resistance to the heavy metals through protection from the carp's scaled body versus scaleless body of the catfish.

Are coastal lagoons physically or biologically controlled ecosystems? Revisiting r vs. K strategies in coastal lagoons and estuaries

Science.gov (United States)

Pérez-Ruzafa, Angel; Marcos, Concepción; Pérez-Ruzafa, Isabel María; Pérez-Marcos, María

2013-11-01

Environmental stress influences biological assemblages, with species responding to stress by adopting particular life-history strategies (e.g., r vs. K). Coastal lagoons and estuaries are considered naturally stressed and physically controlled systems with frequent environmental disturbances and fluctuations. At the same time, their transitional nature (between terrestrial, freshwater and marine) makes them especially vulnerable to human impacts and land and freshwater inputs. As a result, it is hypothesised that residents of coastal lagoons would display characteristics of r-selected species. The r-strategy involves increased reproductive effort through early reproduction, small and numerous offspring with a large dispersive capability, short lifespan and small adult body size. Together, these traits provide a selective advantage in such unpredictable or short-lived environments. Alternatively, immigrants to coastal lagoons should mostly be K-strategists, with a competitive advantage over the r-strategists, at least on a temporary time scale. These hypotheses were explored using a dataset from 73 Atlanto-Mediterranean sites: 27 estuaries, 42 coastal lagoons and 4 from the sea, obtained from published sources. A detailed analysis of the distributions of the different resident fish species according to lagoon characteristics indicated that in lagoons with a higher marine influence the families Gobiidae, Blenniidae and Syngnathidae were common, while lagoons with freshwater influence are characterized by Cyprinidae and other freshwater species. In analyzing the biological strategies of lagoon species we found that fish assemblages inhabiting marine influenced lagoons were characterized by solitary, necto-benthonic sedentary species. These species are often hermaphroditic, with benthic broods and many exhibit brooding behaviour. This suggests that marine influenced lagoons are dominated by K-strategist species, while r-strategy species will be more common in

Thermal and Hydraulic Conditions Supporting the Recruitment of Asian Carp in Seiche Affected Rivers of Lake Erie Basin - A Case Study of the Lower Sandusky River in Ohio

Science.gov (United States)

Soong, D. T.; Santacruz, S.; Jones, L.; Garcia, T.; Kočovský, P. M.; Embke, H.

2017-12-01

Grass Carp Ctenopharyngodon idella (Cyprinidae) is an invasive fish species that spawns in rivers during high-flow events. In their native range, it is believed eggs must hatch within the riverine environment in order to eventually result in production of adult fish. The lower Sandusky River is approximately 26 km long extending from its confluence with Sandusky Bay upstream to the Ballville Dam, which is impassible for Grass Carp. Grass Carp are known to have spawned in the Sandusky River, a tributary to Lake Erie, in 2011, 2013, 2015, and 2017. This study characterizes the thermal and hydraulic conditions under which these eggs could hatch in the lower Sandusky River, a relatively short river reach for egg hatching. Grass Carp eggs collected in 2015 were previously analyzed for hatching locations using a one-dimensional steady-state HEC-RAS hydraulic model. In this study we refine estimates of hatching locations by incorporating the influence of fluctuating water levels downstream due to seiches in Lake Erie and overland and tributary inflows using an unsteady 1D/2D HEC-RAS hydraulic model. Additionally, conditions conducive to successful hatching, which occurs when eggs reach the hatching stage within the river, were analyzed from nine high-flow events between 2011 and 2015. Simulated hydraulic and water temperature data were used as inputs to the Fluvial Egg Drift Simulator (FluEgg) model, which was used to analyze the transport and dispersal of Grass carp eggs until hatching. We will describe the differences in steady- and unsteady-state hydraulic modeling in predicting hatching locations of Grass Carp eggs for the 2015 spawning events. Results will also include hydraulic and temperature variables that contribute to the successful/unsuccessful in-river hatching for the nine flow events simulated.

Hatchability and survival of oncomiracidia of Paradiplozoon ichthyoxanthon (Monogenea: Diplozoidae) exposed to aqueous aluminium.

Science.gov (United States)

Gilbert, Beric M; Avenant-Oldewage, Annemariè

2016-07-28

Monogenea is a diverse group of ectoparasites showing great potential as sentinel organisms for monitoring environmental health. Exposure to metals negatively affects infrapopulations of monogeneans and exposure to aluminium has been found to negatively impact the survival of gyrodactylids. Samples of infected host fish, the smallmouth yellowfish Labeobarbus aeneus (Cyprinidae), were collected from the Vaal Dam, South Africa and transported back to the laboratory in dark 160 l containers. Eggs of the monogenean Paradiplozoon ichthyoxanthon infecting L. aeneus were collected and exposed to varying concentrations of aluminium along with a control group in static tanks. The eggs were checked every 24 h and hatching commenced 13-14 days after exposure. Water samples were taken from exposure tanks and acidified for analysis of Al levels with inductively-coupled plasma mass spectrometry. Hatching of eggs was variable between exposures, and in 30 μg Al/l and 60 μg Al/l was found to occur before eggs in control beakers, whereas, exposure to 120 μg Al/l delayed hatching and reduced hatchability. Survival of hatched oncomiracidia was concentration dependent and negatively correlated with aluminium concentrations. Lowest survival was recorded for 60 μg Al/l and 120 μg Al/l where all larvae died shortly after or during hatching. Normal development of embryos of P. ichthyoxanthon within eggs exposed to all doses of aluminium indicates that the egg shell is moderately impermeable to metals and inhibits movement of aluminium across the shell and interacting with developing embryos. Higher larval mortality rate in 120 μg/l exposure can be related to aluminium crossing the egg shell in the late stages and causing death of unhatched yet fully developed embryos, possibly due to changes in the permeability of the egg shell as embryos neared developmental completion. Accelerated death of oncomiracidia after hatching indicates sensitivity toward high concentrations of aluminium.

Behavioral and physiological adaptations to high-flow velocities in chubs (Gila spp.) native to Southwestern USA.

Science.gov (United States)

Moran, Clinton J; Gerry, Shannon P; O'Neill, Matthew W; Rzucidlo, Caroline L; Gibb, Alice C

2018-05-18

Morphological streamlining is often associated with physiological advantages for steady swimming in fishes. Though most commonly studied in pelagic fishes, streamlining also occurs in fishes that occupy high-flow environments. Before the installation of dams and water diversions, bonytail (Cyprinidae, Gila elegans ), a fish endemic to the Colorado River (USA), regularly experienced massive, seasonal flooding events. Individuals of G. elegans display morphological characteristics that may facilitate swimming in high-flow conditions, including a narrow caudal peduncle and a high aspect ratio caudal fin. We tested the hypothesis that these features improve sustained swimming performance in bonytail by comparing locomotor performance in G. elegans with that of the closely related roundtail chub ( Gila robusta ) and two non-native species, rainbow trout ( Oncorhynchus mykiss ) and smallmouth bass ( Micropterus dolomieu ), using a Brett-style respirometer and locomotor step-tests. Gila elegans had the lowest estimated drag coefficient and the highest sustained swimming speeds relative to the other three species. There were no detectible differences in locomotor energetics during steady swimming among the four species. When challenged by high-velocity water flows, the second native species examined in this study, G. robusta , exploited the boundary effects in the flow tank by pitching forward and bracing the pelvic and pectoral fins against the acrylic tank bottom to 'hold station'. Because G. robusta can station hold to prevent being swept downstream during high flows and G. elegans can maintain swimming speeds greater than those of smallmouth bass and rainbow trout with comparable metabolic costs, we suggest that management agencies could use artificial flooding events to wash non-native competitors downstream and out of the Colorado River habitat. © 2018. Published by The Company of Biologists Ltd.

De novo assembly and characterization of the spleen transcriptome of common carp (Cyprinus carpio) using Illumina paired-end sequencing.

Science.gov (United States)

Li, Guoxi; Zhao, Yinli; Liu, Zhonghu; Gao, Chunsheng; Yan, Fengbin; Liu, Bianzhi; Feng, Jianxin

2015-06-01

Common carp (Cyprinus carpio) is one of the most important aquacultured species of the family Cyprinidae, and breeding this species for disease resistance is becoming more and more important. However, at the genome or transcriptome levels, study of the immunogenetics of disease resistance in the common carp is lacking. In this study, 60,316,906 and 75,200,328 paired-end clean reads were obtained from two cDNA libraries of the common carp spleen by Illumina paired-end sequencing technology. Totally, 130,293 unique transcript fragments (unigenes) were assembled, with an average length of 1400.57 bp. Approximately 105,612 (81.06%) unigenes could be annotated according to their homology with matches in the Nr, Nt, Swiss-Prot, COG, GO, or KEGG databases, and they were found to represent 46,747 non-redundant genes. Comparative analysis showed that 59.82% of the unigenes have significant similarity to zebrafish Refseq proteins. Gene expression comparison revealed that 10,432 and 6889 annotated unigenes were, respectively, up- and down-regulated with at least twofold changes between two developmental stages of the common carp spleen. Gene ontology and KEGG analysis were performed to classify all unigenes into functional categories for understanding gene functions and regulation pathways. In addition, 46,847 simple sequence repeats (SSRs) were detected from 35,618 unigenes, and a large number of single nucleotide polymorphism (SNP) and insertion/deletion (INDEL) sites were identified in the spleen transcriptome of common carp. This study has characterized the spleen transcriptome of the common carp for the first time, providing a valuable resource for a better understanding of the common carp immune system and defense mechanisms. This knowledge will also facilitate future functional studies on common carp immunogenetics that may eventually be applied in breeding programs. Copyright © 2015 Elsevier Ltd. All rights reserved.

From oil-based mud to water-based mud

International Nuclear Information System (INIS)

Christiansen, C.

1991-01-01

Maersk Olie og Gas AS has used low toxic oil-based muds extensively since 1982 for drilling development wells and later in the development of horizontal well drilling techniques. However, in view of the strong drive towards a reduction in the amount of oil discharged to the North Sea from the oil industry, Maersk Olie og Gas AS initiated trials with new or improved types of water-based mud, first in deviated wells (1989) and then in horizontal wells (1990). The paper reviews Maersk Olie og Gas As experience with oil-based mud since the drilling of the first horizontal well in 1987, specifically with respect to cuttings washing equipment, oil retention on cuttings, and the procedure for monitoring of this parameter. It describes the circumstances leading to the decision to revert to water-based mud systems. Finally, it reviews the experience gained so far with the new improved types of water-based mud systems, mainly glycol and KCl/polymer mud systems. Comparison of operational data, such as rate of penetration, torque and drag, etc., is made between wells drilled with oil-based mud and water-based mud. The trials with the new improved types of water-based mud systems have been positive, i.e. horizontal wells can be drilled successfully with water-based mud. As a result, Maersk Olie og and Gas AS has decided to discontinue the use of low toxic oil-based muds in the Danish sector of the North Sea

Brain structure evolution in a basal vertebrate clade: evidence from phylogenetic comparative analysis of cichlid fishes

Directory of Open Access Journals (Sweden)

Kolm Niclas

2009-09-01

Full Text Available Abstract Background The vertebrate brain is composed of several interconnected, functionally distinct structures and much debate has surrounded the basic question of how these structures evolve. On the one hand, according to the 'mosaic evolution hypothesis', because of the elevated metabolic cost of brain tissue, selection is expected to target specific structures mediating the cognitive abilities which are being favored. On the other hand, the 'concerted evolution hypothesis' argues that developmental constraints limit such mosaic evolution and instead the size of the entire brain varies in response to selection on any of its constituent parts. To date, analyses of these hypotheses of brain evolution have been limited to mammals and birds; excluding Actinopterygii, the basal and most diverse class of vertebrates. Using a combination of recently developed phylogenetic multivariate allometry analyses and comparative methods that can identify distinct rates of evolution, even in highly correlated traits, we studied brain structure evolution in a highly variable clade of ray-finned fishes; the Tanganyikan cichlids. Results Total brain size explained 86% of the variance in brain structure volume in cichlids, a lower proportion than what has previously been reported for mammals. Brain structures showed variation in pair-wise allometry suggesting some degree of independence in evolutionary changes in size. This result is supported by variation among structures on the strength of their loadings on the principal size axis of the allometric analysis. The rate of evolution analyses generally supported the results of the multivariate allometry analyses, showing variation among several structures in their evolutionary patterns. The olfactory bulbs and hypothalamus were found to evolve faster than other structures while the dorsal medulla presented the slowest evolutionary rate. Conclusion Our results favor a mosaic model of brain evolution, as certain

The origin and evolution of the surfactant system in fish: insights into the evolution of lungs and swim bladders.

Science.gov (United States)

Daniels, Christopher B; Orgeig, Sandra; Sullivan, Lucy C; Ling, Nicholas; Bennett, Michael B; Schürch, Samuel; Val, Adalberto Luis; Brauner, Colin J

2004-01-01

Several times throughout their radiation fish have evolved either lungs or swim bladders as gas-holding structures. Lungs and swim bladders have different ontogenetic origins and can be used either for buoyancy or as an accessory respiratory organ. Therefore, the presence of air-filled bladders or lungs in different groups of fishes is an example of convergent evolution. We propose that air breathing could not occur without the presence of a surfactant system and suggest that this system may have originated in epithelial cells lining the pharynx. Here we present new data on the surfactant system in swim bladders of three teleost fish (the air-breathing pirarucu Arapaima gigas and tarpon Megalops cyprinoides and the non-air-breathing New Zealand snapper Pagrus auratus). We determined the presence of surfactant using biochemical, biophysical, and morphological analyses and determined homology using immunohistochemical analysis of the surfactant proteins (SPs). We relate the presence and structure of the surfactant system to those previously described in the swim bladders of another teleost, the goldfish, and those of the air-breathing organs of the other members of the Osteichthyes, the more primitive air-breathing Actinopterygii and the Sarcopterygii. Snapper and tarpon swim bladders are lined with squamous and cuboidal epithelial cells, respectively, containing membrane-bound lamellar bodies. Phosphatidylcholine dominates the phospholipid (PL) profile of lavage material from all fish analyzed to date. The presence of the characteristic surfactant lipids in pirarucu and tarpon, lamellar bodies in tarpon and snapper, SP-B in tarpon and pirarucu lavage, and SPs (A, B, and D) in swim bladder tissue of the tarpon provide strong evidence that the surfactant system of teleosts is homologous with that of other fish and of tetrapods. This study is the first demonstration of the presence of SP-D in the air-breathing organs of nonmammalian species and SP-B in actinopterygian

Computer-based multi-channel analyzer based on internet

International Nuclear Information System (INIS)

Zhou Xinzhi; Ning Jiaoxian

2001-01-01

Combined the technology of Internet with computer-based multi-channel analyzer, a new kind of computer-based multi-channel analyzer system which is based on browser is presented. Its framework and principle as well as its implementation are discussed

Combining Host-based and network-based intrusion detection system

African Journals Online (AJOL)

These attacks were simulated using hping. The proposed system is implemented in Java. The results show that the proposed system is able to detect attacks both from within (host-based) and outside sources (network-based). Key Words: Intrusion Detection System (IDS), Host-based, Network-based, Signature, Security log.

NMR studies concerning base-base interactions in oligonucleotides

International Nuclear Information System (INIS)

Hoogen, Y.T. van den.

1988-01-01

Two main subjects are treated in the present thesis. The firsst part principally deals with the base-base interactions in single-stranded oligoribonucleotides. The second part presents NMR and model-building studies of DNA and RNA duplexes containing an unpaired base. (author). 242 refs.; 26 figs.; 24 tabs

XML-Based SHINE Knowledge Base Interchange Language

Science.gov (United States)

James, Mark; Mackey, Ryan; Tikidjian, Raffi

2008-01-01

The SHINE Knowledge Base Interchange Language software has been designed to more efficiently send new knowledge bases to spacecraft that have been embedded with the Spacecraft Health Inference Engine (SHINE) tool. The intention of the behavioral model is to capture most of the information generally associated with a spacecraft functional model, while specifically addressing the needs of execution within SHINE and Livingstone. As such, it has some constructs that are based on one or the other.

Communication Base Station Log Analysis Based on Hierarchical Clustering

Directory of Open Access Journals (Sweden)

Zhang Shao-Hua

2017-01-01

Full Text Available Communication base stations generate massive data every day, these base station logs play an important value in mining of the business circles. This paper use data mining technology and hierarchical clustering algorithm to group the scope of business circle for the base station by recording the data of these base stations.Through analyzing the data of different business circle based on feature extraction and comparing different business circle category characteristics, which can choose a suitable area for operators of commercial marketing.

Value-based metrics and Internet-based enterprises

Science.gov (United States)

Gupta, Krishan M.

2001-10-01

Within the last few years, a host of value-based metrics like EVA, MVA, TBR, CFORI, and TSR have evolved. This paper attempts to analyze the validity and applicability of EVA and Balanced Scorecard for Internet based organizations. Despite the collapse of the dot-com model, the firms engaged in e- commerce continue to struggle to find new ways to account for customer-base, technology, employees, knowledge, etc, as part of the value of the firm. While some metrics, like the Balance Scorecard are geared towards internal use, others like EVA are for external use. Value-based metrics are used for performing internal audits as well as comparing firms against one another; and can also be effectively utilized by individuals outside the firm looking to determine if the firm is creating value for its stakeholders.

Integrated Case Based and Rule Based Reasoning for Decision Support

OpenAIRE

Eshete, Azeb Bekele

2009-01-01

This project is a continuation of my specialization project which was focused on studying theoretical concepts related to case based reasoning method, rule based reasoning method and integration of them. The integration of rule-based and case-based reasoning methods has shown a substantial improvement with regards to performance over the individual methods. Verdande Technology As wants to try integrating the rule based reasoning method with an existing case based system. This project focu...

Knowledge base verification based on enhanced colored petri net

Energy Technology Data Exchange (ETDEWEB)

Kim, Jong Hyun; Seong, Poong Hyun [Korea Advanced Institute of Science and Technology, Taejon (Korea, Republic of)

1998-12-31

Verification is a process aimed at demonstrating whether a system meets it`s specified requirements. As expert systems are used in various applications, the knowledge base verification of systems takes an important position. The conventional Petri net approach that has been studied recently in order to verify the knowledge base is found that it is inadequate to verify the knowledge base of large and complex system, such as alarm processing system of nuclear power plant. Thus, we propose an improved method that models the knowledge base as enhanced colored Petri net. In this study, we analyze the reachability and the error characteristics of the knowledge base and apply the method to verification of simple knowledge base. 8 refs., 4 figs. (Author)

Knowledge base verification based on enhanced colored petri net

Energy Technology Data Exchange (ETDEWEB)

Kim, Jong Hyun; Seong, Poong Hyun [Korea Advanced Institute of Science and Technology, Taejon (Korea, Republic of)

1997-12-31

Verification is a process aimed at demonstrating whether a system meets it`s specified requirements. As expert systems are used in various applications, the knowledge base verification of systems takes an important position. The conventional Petri net approach that has been studied recently in order to verify the knowledge base is found that it is inadequate to verify the knowledge base of large and complex system, such as alarm processing system of nuclear power plant. Thus, we propose an improved method that models the knowledge base as enhanced colored Petri net. In this study, we analyze the reachability and the error characteristics of the knowledge base and apply the method to verification of simple knowledge base. 8 refs., 4 figs. (Author)

Gene mapping of 28S and 5S rDNA sites in chromosomes of two Barbus species and their F1 hybrids (Teleostei, Cyprinidae

Directory of Open Access Journals (Sweden)

Aneta Spoz

2015-11-01

Chromosomal location of ribosomal DNA sequences is useful for comparative cytogenetic fish studies due to their relatively fast rate of evolution. The results of species from the family Barbinae comparatively presented here for the first time, and they may support further taxonomical studies of the Barbus species.

Computer-based and web-based radiation safety training

Energy Technology Data Exchange (ETDEWEB)

Owen, C., LLNL

1998-03-01

The traditional approach to delivering radiation safety training has been to provide a stand-up lecture of the topic, with the possible aid of video, and to repeat the same material periodically. New approaches to meeting training requirements are needed to address the advent of flexible work hours and telecommuting, and to better accommodate individuals learning at their own pace. Computer- based and web-based radiation safety training can provide this alternative. Computer-based and web- based training is an interactive form of learning that the student controls, resulting in enhanced and focused learning at a time most often chosen by the student.

Content-Based Image Retrial Based on Hadoop

Directory of Open Access Journals (Sweden)

DongSheng Yin

2013-01-01

Full Text Available Generally, time complexity of algorithms for content-based image retrial is extremely high. In order to retrieve images on large-scale databases efficiently, a new way for retrieving based on Hadoop distributed framework is proposed. Firstly, a database of images features is built by using Speeded Up Robust Features algorithm and Locality-Sensitive Hashing and then perform the search on Hadoop platform in a parallel way specially designed. Considerable experimental results show that it is able to retrieve images based on content on large-scale cluster and image sets effectively.

Home-based versus centre-based cardiac rehabilitation.

Science.gov (United States)

Taylor, Rod S; Dalal, Hayes; Jolly, Kate; Moxham, Tiffany; Zawada, Anna

2010-01-20

The burden of cardiovascular disease world-wide is one of great concern to patients and health care agencies alike. Traditionally centre-based cardiac rehabilitation (CR) programmes are offered to individuals after cardiac events to aid recovery and prevent further cardiac illness. Home-based cardiac rehabilitation programmes have been introduced in an attempt to widen access and participation. To determine the effectiveness of home-based cardiac rehabilitation programmes compared with supervised centre-based cardiac rehabilitation on mortality and morbidity, health-related quality of life and modifiable cardiac risk factors in patients with coronary heart disease. We updated the search of a previous review by searching the Cochrane Central Register of Controlled Trials (CENTRAL) in The Cochrane Library (2007, Issue 4), MEDLINE, EMBASE and CINAHL from 2001 to January 2008. We checked reference lists and sought advice from experts. No language restrictions were applied. Randomised controlled trials (RCTs) that compared centre-based cardiac rehabilitation (e.g. hospital, gymnasium, sports centre) with home-based programmes, in adults with myocardial infarction, angina, heart failure or who had undergone revascularisation. Studies were selected independently by two reviewers, and data extracted by a single reviewer and checked by a second one. Authors were contacted where possible to obtain missing information. Twelve studies (1,938 participants) met the inclusion criteria. The majority of studies recruited a lower risk patient following an acute myocardial infarction (MI) and revascularisation. There was no difference in outcomes of home- versus centre-based cardiac rehabilitation in mortality risk ratio (RR) was1.31 (95% confidence interval (C) 0.65 to 2.66), cardiac events, exercise capacity standardised mean difference (SMD) -0.11 (95% CI -0.35 to 0.13), as well as in modifiable risk factors (systolic blood pressure; diastolic blood pressure; total cholesterol

Population and feeding structure of Steindachnerina notonota Miranda-Ribeiro, 1937 (Actinopterygii, Characiformes, Curimatidae in Taperoá II dam, semi-arid region of Paraíba, Brazil Estrutura populacional e alimentar de Steindachnerina notonota Miranda Ribeiro, 1937 (Actinopterygii, Characiformes, Curimatidae no Açude Taperoá II, na região do semi-árido da Paraíba, Brasil

Directory of Open Access Journals (Sweden)

Ana Karla Araujo Montenegro

2011-09-01

Full Text Available AIM: The present study investigated population structure, weight-length relationships, sex ratio and associations between feeding activity and reproductive period, diet and alimentary regime of Steindachnerina notonota at Taperoá II dam, semi-arid region of Paraíba State. METHODS: The region has the lowest pluviometric rates of Brazil. Fishes were collected during six sampling periods (October and December/2005, and March, June, August and October of 2006 encompassing two dry periods, and one rainy period. Cast, seine and gill nets were used to collect the individuals. RESULTS: Throughout the study period 120 individuals were collected, with total length ranging between 2.2 and 10.7 cm and weight between 0.31 and 43.1 g. A recruitment period, identified due to a higher abundance of small individuals in the population, was observed in the beginning of the rainy period of 2006, lasting until the beginning of the dry season. S. notonota showed a negative allometric growth type, i.e., individuals 'elongate' during their development. A significantly higher proportion of females were observed throughout the study period. The relationship between feeding and reproductive activities were not significant, given that individuals showed high feeding rates regardless of the intensity of their reproductive activities. Although the diet of S. notonota comprised several items such as plant debris, eggs, organic matter, phytoplankton, zooplankton, Nematoda, Ostracada, Conchostraca, among others, the most important feeding item was detritus, suggesting a predominant detritivirous feeding habit. CONCLUSIONS: Biological aspects of S. notonota observed in the present study suggest that this species has potential to attain great population sizes, as consequence of both diet and feeding dynamics, as well as its reproductive characteristics and growth type.OBJETIVO: O presente estudo investigou a estrutura da população, a relação peso-comprimento, a razão sexual, as associações entre atividade alimentar e período de reprodução, dieta e regime alimentar de Steindachnerina notonota, no açude Taperoá II, semi-árido paraibano. MÉTODOS: A região tem os menores índices pluviométricos do Brasil. Os peixes foram coletados em seis amostragens (Outubro e Dezembro de 2005, e Março, Junho, Agosto e Outubro de 2006, compreendendo 2 períodos de estiagem e 1 chuvoso. Para a captura dos exemplares, utilizou-se tarrafa, redes de espera e de arrasto. RESULTADOS: Ao longo do estudo capturou-se um total de 120 indivíduos, que mediram entre 2,2 e 10,7 cm de comprimento total e pesaram de 0,31 a 43,1 g. Evidenciou‑se intenso recrutamento durante todo o período estudado, demonstrado pela maior abundância de indivíduos em estádios gonadais “em maturação” (2 e “maduros (3”. S. notonota apresentou um crescimento do tipo alométrico negativo (quando os indivíduos se tornam mais “alongados” durante o seu desenvolvimento, com uma proporção sexual significativamente maior de fêmeas ao longo do período estudado. Observou-se que a relação entre a atividade alimentar e a atividade reprodutiva não foi significativa, tendo em vista que os indivíduos apresentaram alta atividade alimentar independente da intensidade da atividade reprodutiva. Embora a dieta alimentar de S. notonota tenha sido composta por diversos itens, a exemplo de restos vegetais, ovos, matéria orgânica, fitoplâncton, zooplâncton, Nematoda, Ostracoda, Conchostraca, dentre outros, o item de maior importância alimentar foi detritos, indicando um regime alimentar predominantemente detritívoro. CONCLUSÕES: Os aspectos da biologia de S. notonota observados no presente estudo, remetem a uma espécie com potencial para atingir grandes tamanhos populacionais, tanto pela sua dieta e dinâmica alimentar, quanto pelas suas características reprodutivas, e tipo de crescimento.

14 CFR 119.47 - Maintaining a principal base of operations, main operations base, and main maintenance base...

Science.gov (United States)

2010-01-01

... 14 Aeronautics and Space 3 2010-01-01 2010-01-01 false Maintaining a principal base of operations, main operations base, and main maintenance base; change of address. 119.47 Section 119.47 Aeronautics... Under Part 121 or Part 135 of This Chapter § 119.47 Maintaining a principal base of operations, main...

Model-Based Requirements Management in Gear Systems Design Based On Graph-Based Design Languages

Directory of Open Access Journals (Sweden)

Kevin Holder

2017-10-01

Full Text Available For several decades, a wide-spread consensus concerning the enormous importance of an in-depth clarification of the specifications of a product has been observed. A weak clarification of specifications is repeatedly listed as a main cause for the failure of product development projects. Requirements, which can be defined as the purpose, goals, constraints, and criteria associated with a product development project, play a central role in the clarification of specifications. The collection of activities which ensure that requirements are identified, documented, maintained, communicated, and traced throughout the life cycle of a system, product, or service can be referred to as “requirements engineering”. These activities can be supported by a collection and combination of strategies, methods, and tools which are appropriate for the clarification of specifications. Numerous publications describe the strategy and the components of requirements management. Furthermore, recent research investigates its industrial application. Simultaneously, promising developments of graph-based design languages for a holistic digital representation of the product life cycle are presented. Current developments realize graph-based languages by the diagrams of the Unified Modelling Language (UML, and allow the automatic generation and evaluation of multiple product variants. The research presented in this paper seeks to present a method in order to combine the advantages of a conscious requirements management process and graph-based design languages. Consequently, the main objective of this paper is the investigation of a model-based integration of requirements in a product development process by means of graph-based design languages. The research method is based on an in-depth analysis of an exemplary industrial product development, a gear system for so-called “Electrical Multiple Units” (EMU. Important requirements were abstracted from a gear system

Solid Base Catalysis

CERN Document Server

Ono, Yoshio

2011-01-01

The importance of solid base catalysts has come to be recognized for their environmentally benign qualities, and much significant progress has been made over the past two decades in catalytic materials and solid base-catalyzed reactions. The book is focused on the solid base. Because of the advantages over liquid bases, the use of solid base catalysts in organic synthesis is expanding. Solid bases are easier to dispose than liquid bases, separation and recovery of products, catalysts and solvents are less difficult, and they are non-corrosive. Furthermore, base-catalyzed reactions can be performed without using solvents and even in the gas phase, opening up more possibilities for discovering novel reaction systems. Using numerous examples, the present volume describes the remarkable role solid base catalysis can play, given the ever increasing worldwide importance of "green" chemistry. The reader will obtain an overall view of solid base catalysis and gain insight into the versatility of the reactions to whic...

Evidence-based monitoring and evaluation of the faith-based ...

African Journals Online (AJOL)

Background: The Islamic Medical Association of Uganda, has been implementing the faith-based approach to HIV prevention without baseline data on expected positive outcomes. Objectives: To establish evidence-based baseline data on expected positive outcomes of the faith-based approach to HIV prevention. Methods: ...

Covariance-Based Measurement Selection Criterion for Gaussian-Based Algorithms

Directory of Open Access Journals (Sweden)

Fernando A. Auat Cheein

2013-01-01

Full Text Available Process modeling by means of Gaussian-based algorithms often suffers from redundant information which usually increases the estimation computational complexity without significantly improving the estimation performance. In this article, a non-arbitrary measurement selection criterion for Gaussian-based algorithms is proposed. The measurement selection criterion is based on the determination of the most significant measurement from both an estimation convergence perspective and the covariance matrix associated with the measurement. The selection criterion is independent from the nature of the measured variable. This criterion is used in conjunction with three Gaussian-based algorithms: the EIF (Extended Information Filter, the EKF (Extended Kalman Filter and the UKF (Unscented Kalman Filter. Nevertheless, the measurement selection criterion shown herein can also be applied to other Gaussian-based algorithms. Although this work is focused on environment modeling, the results shown herein can be applied to other Gaussian-based algorithm implementations. Mathematical descriptions and implementation results that validate the proposal are also included in this work.

Model-Based Learning Environment Based on The Concept IPS School-Based Management

Directory of Open Access Journals (Sweden)

Hamid Darmadi

2017-03-01

Full Text Available The results showed: (1 learning model IPS-oriented environment can grow and not you love the cultural values of the area as a basis for the development of national culture, (2 community participation, and the role of government in implementing learning model of IPS-based environment provides a positive impact for the improvement of management school resources, (3 learning model IPS-based environment effectively creating a way of life together peacefully, increase the intensity of togetherness and mutual respect (4 learning model IPS-based environment can improve student learning outcomes, (5 there are differences in the expression of attitudes and results learning among students who are located in the area of conflict with students who are outside the area of conflict (6 analysis of the scale of attitudes among school students da SMA result rewards high school students to the values of unity and nation, respect for diversity and peaceful coexistence, It is recommended that the Department of Education authority as an institution of Trustees and the development of social and cultural values in the province can apply IPS learning model based environments.

A Web-Based Learning Support System for Inquiry-Based Learning

Science.gov (United States)

Kim, Dong Won; Yao, Jingtao

The emergence of the Internet and Web technology makes it possible to implement the ideals of inquiry-based learning, in which students seek truth, information, or knowledge by questioning. Web-based learning support systems can provide a good framework for inquiry-based learning. This article presents a study on a Web-based learning support system called Online Treasure Hunt. The Web-based learning support system mainly consists of a teaching support subsystem, a learning support subsystem, and a treasure hunt game. The teaching support subsystem allows instructors to design their own inquiry-based learning environments. The learning support subsystem supports students' inquiry activities. The treasure hunt game enables students to investigate new knowledge, develop ideas, and review their findings. Online Treasure Hunt complies with a treasure hunt model. The treasure hunt model formalizes a general treasure hunt game to contain the learning strategies of inquiry-based learning. This Web-based learning support system empowered with the online-learning game and founded on the sound learning strategies furnishes students with the interactive and collaborative student-centered learning environment.

Design of Composite Structures Using Knowledge-Based and Case Based Reasoning

Science.gov (United States)

Lambright, Jonathan Paul

1996-01-01

A method of using knowledge based and case based reasoning to assist designers during conceptual design tasks of composite structures was proposed. The cooperative use of heuristics, procedural knowledge, and previous similar design cases suggests a potential reduction in design cycle time and ultimately product lead time. The hypothesis of this work is that the design process of composite structures can be improved by using Case-Based Reasoning (CBR) and Knowledge-Based (KB) reasoning in the early design stages. The technique of using knowledge-based and case-based reasoning facilitates the gathering of disparate information into one location that is easily and readily available. The method suggests that the inclusion of downstream life-cycle issues into the conceptual design phase reduces potential of defective, and sub-optimal composite structures. Three industry experts were interviewed extensively. The experts provided design rules, previous design cases, and test problems. A Knowledge Based Reasoning system was developed using the CLIPS (C Language Interpretive Procedural System) environment and a Case Based Reasoning System was developed using the Design Memory Utility For Sharing Experiences (MUSE) xviii environment. A Design Characteristic State (DCS) was used to document the design specifications, constraints, and problem areas using attribute-value pair relationships. The DCS provided consistent design information between the knowledge base and case base. Results indicated that the use of knowledge based and case based reasoning provided a robust design environment for composite structures. The knowledge base provided design guidance from well defined rules and procedural knowledge. The case base provided suggestions on design and manufacturing techniques based on previous similar designs and warnings of potential problems and pitfalls. The case base complemented the knowledge base and extended the problem solving capability beyond the existence of

Feature-Based versus Category-Based Induction with Uncertain Categories

Science.gov (United States)

Griffiths, Oren; Hayes, Brett K.; Newell, Ben R.

2012-01-01

Previous research has suggested that when feature inferences have to be made about an instance whose category membership is uncertain, feature-based inductive reasoning is used to the exclusion of category-based induction. These results contrast with the observation that people can and do use category-based induction when category membership is…

WPS criterion proposition based on experimental data base interpretation

International Nuclear Information System (INIS)

Chapuliot, S.; Izard, J.P.; Moinereau, D.; Marie, S.

2011-01-01

This article gives the background and the methodology developed to define a K J based criterion for brittle fracture of Reactor Pressure Vessel (RPV) submitted to Pressurized Thermal Shock (PTS), and taking into account Warm Pre Stressing effect (WPS). The first step of this methodology is the constitution of an experimental data base. This work was performed through bibliography and partnerships, and allows merging experimental results dealing with: -) Various ferritic steels; -) Various material states (as received, thermally aged, irradiated...); -) Various mode of fracture (cleavage, inter-granular, mixed mode); -) Various specimen geometry and size (CT, SENB, mock-ups); -) Various thermo-mechanical transients. Based on this experimental data base, a simple K J based limit is proposed and compared to experimental results. Parametric studies are performed in order to define the main parameters of the problem. Finally, a simple proposition based on a detailed analysis of tests results is performed. This proposition giving satisfactory results in every cases, it constitutes a good candidate for integration in French RSE-M code for in service assessment. (authors)

Bioacumulation of trace elements in hepatic and renal tissues of the white mullet Mugil curema Valenciennes, 1836 (Actinopterygii, Mugilidae) in two coastal systems in southeastern Brazil

Science.gov (United States)

Fernandez, W. S.; Dias, J. F.; Boufleur, L. A.; Amaral, L.; Yoneama, M. L.; Dias, J. F.

2014-01-01

The aim of this study is to investigate the presence and the concentration of trace elements in hepatic and renal tissues of white mullet (Mugil curema) by Particle-induced X-ray emission (PIXE). Fish specimens were collected in two coastal areas of São Paulo state-Brazil: the Santos estuary (from March 2009 to February 2010) and the Cananéia-Iguape coastal estuarine system (from May 2008 to April 2009). For the elemental analysis, n = 470 sample tissues (liver and kidney) were pooled according to location and type of organ. Trace elements such as Fe, Cu, Zn and Br were observed in both tissues of M. curema with concentrations ranging from 800 μg g-1 for Fe to 7 μg g-1 for Cu. The concentrations of Cu and Zn showed statistical significant differences among the tissues of M. curema (p < 0.05). Relatively higher concentrations of Cu and Zn were observed in the liver tissue. There was no significantly difference in the elemental concentrations between the two studied areas. The Cu levels in liver tissues of M. curema were found to be above the maximum limits for consumption, according to the United States Environmental Protection Agency (EPA) and Brazilian National Health Surveillance Agency (ANVISA).

Bioacumulation of trace elements in hepatic and renal tissues of the white mullet Mugil curema Valenciennes, 1836 (Actinopterygii, Mugilidae) in two coastal systems in southeastern Brazil

International Nuclear Information System (INIS)

Fernandez, W.S.; Dias, J.F.; Boufleur, L.A.; Amaral, L.; Yoneama, M.L.; Dias, J.F.

2014-01-01

The aim of this study is to investigate the presence and the concentration of trace elements in hepatic and renal tissues of white mullet (Mugil curema) by Particle-induced X-ray emission (PIXE). Fish specimens were collected in two coastal areas of São Paulo state-Brazil: the Santos estuary (from March 2009 to February 2010) and the Cananéia-Iguape coastal estuarine system (from May 2008 to April 2009). For the elemental analysis, n = 470 sample tissues (liver and kidney) were pooled according to location and type of organ. Trace elements such as Fe, Cu, Zn and Br were observed in both tissues of M. curema with concentrations ranging from 800 μg g −1 for Fe to 7 μg g −1 for Cu. The concentrations of Cu and Zn showed statistical significant differences among the tissues of M. curema (p < 0.05). Relatively higher concentrations of Cu and Zn were observed in the liver tissue. There was no significantly difference in the elemental concentrations between the two studied areas. The Cu levels in liver tissues of M. curema were found to be above the maximum limits for consumption, according to the United States Environmental Protection Agency (EPA) and Brazilian National Health Surveillance Agency (ANVISA)

Growth differences in different biotypes of the hybrid complex of Cobitis elongatoides x Cobitis tanaitica (Actinopterygii: Cypriniformes: Cobitidae) in the Okna River (Danube River basin), Slovakia

Czech Academy of Sciences Publication Activity Database

Fedorčák, J.; Koščo, J.; Halačka, Karel; Manko, P.

2017-01-01

Roč. 47, č. 2 (2017), s. 125-132 ISSN 0137-1592 R&D Projects: GA ČR GA13-12580S Institutional support: RVO:68081766 Keywords : annulus * back-calculated length * loach * clone * polyploidy Subject RIV: EG - Zoology OBOR OECD: Zoology Impact factor: 0.670, year: 2016

Bioacumulation of trace elements in hepatic and renal tissues of the white mullet Mugil curema Valenciennes, 1836 (Actinopterygii, Mugilidae) in two coastal systems in southeastern Brazil

Energy Technology Data Exchange (ETDEWEB)

Fernandez, W.S., E-mail: fernandez@usp.br [Graduate Program in Oceanography, Oceanographic Institute, University of São Paulo, Praça do Oceanográfico 191, Cidade Universitária, CEP 05508-120 São Paulo, SP (Brazil); Physics Institute, Federal University of Rio Grande do Sul, CP 15051, CEP 91501-970 Porto Alegre, RS (Brazil); Dias, J.F. [Oceanographic Institute, University of São Paulo, Praça do Oceanográfico 191, Cidade Universitária, CEP 05508-120 São Paulo, SP (Brazil); Boufleur, L.A.; Amaral, L.; Yoneama, M.L.; Dias, J.F. [Physics Institute, Federal University of Rio Grande do Sul, CP 15051, CEP 91501-970 Porto Alegre, RS (Brazil)

2014-01-01

The aim of this study is to investigate the presence and the concentration of trace elements in hepatic and renal tissues of white mullet (Mugil curema) by Particle-induced X-ray emission (PIXE). Fish specimens were collected in two coastal areas of São Paulo state-Brazil: the Santos estuary (from March 2009 to February 2010) and the Cananéia-Iguape coastal estuarine system (from May 2008 to April 2009). For the elemental analysis, n = 470 sample tissues (liver and kidney) were pooled according to location and type of organ. Trace elements such as Fe, Cu, Zn and Br were observed in both tissues of M. curema with concentrations ranging from 800 μg g{sup −1} for Fe to 7 μg g{sup −1} for Cu. The concentrations of Cu and Zn showed statistical significant differences among the tissues of M. curema (p < 0.05). Relatively higher concentrations of Cu and Zn were observed in the liver tissue. There was no significantly difference in the elemental concentrations between the two studied areas. The Cu levels in liver tissues of M. curema were found to be above the maximum limits for consumption, according to the United States Environmental Protection Agency (EPA) and Brazilian National Health Surveillance Agency (ANVISA)

Set-Based Discrete Particle Swarm Optimization Based on Decomposition for Permutation-Based Multiobjective Combinatorial Optimization Problems.

Science.gov (United States)

Yu, Xue; Chen, Wei-Neng; Gu, Tianlong; Zhang, Huaxiang; Yuan, Huaqiang; Kwong, Sam; Zhang, Jun

2017-08-07

This paper studies a specific class of multiobjective combinatorial optimization problems (MOCOPs), namely the permutation-based MOCOPs. Many commonly seen MOCOPs, e.g., multiobjective traveling salesman problem (MOTSP), multiobjective project scheduling problem (MOPSP), belong to this problem class and they can be very different. However, as the permutation-based MOCOPs share the inherent similarity that the structure of their search space is usually in the shape of a permutation tree, this paper proposes a generic multiobjective set-based particle swarm optimization methodology based on decomposition, termed MS-PSO/D. In order to coordinate with the property of permutation-based MOCOPs, MS-PSO/D utilizes an element-based representation and a constructive approach. Through this, feasible solutions under constraints can be generated step by step following the permutation-tree-shaped structure. And problem-related heuristic information is introduced in the constructive approach for efficiency. In order to address the multiobjective optimization issues, the decomposition strategy is employed, in which the problem is converted into multiple single-objective subproblems according to a set of weight vectors. Besides, a flexible mechanism for diversity control is provided in MS-PSO/D. Extensive experiments have been conducted to study MS-PSO/D on two permutation-based MOCOPs, namely the MOTSP and the MOPSP. Experimental results validate that the proposed methodology is promising.

Evidence-based guidelines, time-based health outcomes, and the Matthew effect

NARCIS (Netherlands)

M.L.E. Essink-Bot (Marie-Louise); M.E. Kruijshaar (Michelle); J.J.M. Barendregt (Jan); L.G.A. Bonneux (Luc)

2007-01-01

textabstractBackground: Cardiovascular risk management guidelines are 'risk based'; health economists' practice is 'time based'. The 'medical' risk-based allocation model maximises numbers of deaths prevented by targeting subjects at high risk, for example, elderly and smokers. The time-based model

Evidence-based guidelines, time-based health outcomes, and the Matthew effect

NARCIS (Netherlands)

Essink-Bot, Marie-Louise; Kruijshaar, Michelle E.; Barendregt, Jan J.; Bonneux, Luc G. A.

2007-01-01

BACKGROUND: Cardiovascular risk management guidelines are 'risk based'; health economists' practice is 'time based'. The 'medical' risk-based allocation model maximises numbers of deaths prevented by targeting subjects at high risk, for example, elderly and smokers. The time-based model maximises

0-6621 : developing a mixture-based specification for flexible base.

Science.gov (United States)

2012-08-01

The Texas Department of Transportation : (TxDOT) currently utilizes Item 247, Flexible : Base, to specify a foundation course of flexible : base utilized in a pavement. Base materials are : not allowed to be used by the contractors until : the ...

Acids and bases solvent effects on acid-base strenght

CERN Document Server

Cox, Brian G

2013-01-01

Acids and bases are ubiquitous in chemistry. Our understanding of them, however, is dominated by their behaviour in water. Transfer to non-aqueous solvents leads to profound changes in acid-base strengths and to the rates and equilibria of many processes: for example, synthetic reactions involving acids, bases and nucleophiles; isolation of pharmaceutical actives through salt formation; formation of zwitter- ions in amino acids; and chromatographic separation of substrates. This book seeks to enhance our understanding of acids and bases by reviewing and analysing their behaviour in non-aqueous solvents. The behaviour is related where possible to that in water, but correlations and contrasts between solvents are also presented.

Characteristic-Based, Task-Based, and Results-Based: Three Value Systems for Assessing Professionally Produced Technical Communication Products.

Science.gov (United States)

Carliner, Saul

2003-01-01

Notes that technical communicators have developed different methodologies for evaluating the effectiveness of their work, such as editing, usability testing, and determining the value added. Explains that at least three broad value systems underlie the assessment practices: characteristic-based, task-based, and results-based. Concludes that the…

Designing Android Based Augmented Reality Location-Based Service Application

Directory of Open Access Journals (Sweden)

Alim Hardiansyah

2018-01-01

Full Text Available Android is an operating system for Linux based smartphone. Android provides an open platform for the developers to create their own application. The most developed and used application now is location based application. This application gives personalization service for mobile device user and is customized to their location. Location based service also gives an opportunity for the developers to develop and increase the value of service. One of the technologies that could be combined with location based application is augmented reality. Augmented reality combines the virtual world with the real one. By the assistance of augmented reality, our surrounding environment could interact in digital form. Information of objects and environment surround us could be added to the augmented reality system and presented. Based on the background, the writers tried to implement those technologies on now rapidly developing android application as a final project to achieve bachelor degree in Department of Informatics Engineering, Faculty of Information Technology and Visual Communication, Al Kamal Science and Technology Institute. This application could be functioned to locate school by using location based service technology with the assistance of navigational applications such as waze and google maps, in form of live direction process through the smartphone

Selective Distance-Based K+ Quantification on Paper-Based Microfluidics.

Science.gov (United States)

Gerold, Chase T; Bakker, Eric; Henry, Charles S

2018-04-03

In this study, paper-based microfluidic devices (μPADs) capable of K + quantification in aqueous samples, as well as in human serum, using both colorimetric and distance-based methods are described. A lipophilic phase containing potassium ionophore I (valinomycin) was utilized to achieve highly selective quantification of K + in the presence of Na + , Li + , and Mg 2+ ions. Successful addition of a suspended lipophilic phase to a wax printed paper-based device is described and offers a solution to current approaches that rely on organic solvents, which damage wax barriers. The approach provides an avenue for future alkali/alkaline quantification utilizing μPADs. Colorimetric spot tests allowed for K + quantification from 0.1-5.0 mM using only 3.00 μL of sample solution. Selective distance-based quantification required small sample volumes (6.00 μL) and gave responses sensitive enough to distinguish between 1.0 and 2.5 mM of sample K + . μPADs using distance-based methods were also capable of differentiating between 4.3 and 6.9 mM K + in human serum samples. Distance-based methods required no digital analysis, electronic hardware, or pumps; any steps required for quantification could be carried out using the naked eye.

Growth, biomass, and production of two small barbs (Barbus humilis and B. tanapelagius, Cyprinidae) and their role in the food web of Lake Tana (Ethiopia)

NARCIS (Netherlands)

Dejen, E.; Vijverberg, J.; Nagelkerke, L.A.J.; Sibbing, F.A.

2009-01-01

Growth, biomass and production of two small barbs (Barbus humilis and Barbus tanapelagius) and their role in the food web of Lake Tana were investigated. From length–frequency distribution of trawl monitoring surveys growth coefficient, F' values were estimated at 3.71–4.17 for B. humilis and

Growth, biomass, and production of two small barbs (Barbus humilis and B. tanapelagius, Cyprinidae) and their role in the food web of Lake Tana (Ethiopia)

NARCIS (Netherlands)

Dejen, E.; Vijverberg, J.; Nagelkerke, L.A.J.; Sibbing, F.A.

2009-01-01

Growth, biomass and production of two small barbs (Barbus humilis and Barbus tanapelagius) and their role in the food web of Lake Tana were investigated. From length–frequency distribution of trawl monitoring surveys growth coefficient, Φ′ values were estimated at 3.71–4.17 for B. humilis and

VectorBase

Data.gov (United States)

U.S. Department of Health & Human Services — VectorBase is a Bioinformatics Resource Center for invertebrate vectors. It is one of four Bioinformatics Resource Centers funded by NIAID to provide web-based...

Owner-Based Role-Based Access Control OB-RBAC

NARCIS (Netherlands)

Saffarian, M.; Sadighi, Babak

Administration of an access control model deals with the question of who is authorized to update policies defined on the basis of that model. One of the models whose administration has absorbed relatively large research is the Role-Based Access Control (RBAC) model. All the existing role-based

Characteristics Data Base: Programmer's guide to the LWR Quantities Data Base

International Nuclear Information System (INIS)

Jones, K.E.; Moore, R.S.

1990-08-01

The LWR Quantities Data Base is a menu-driven PC data base developed as part of OCRWM's waste, technical data base on the characteristics of potential repository wastes, which also includes non-LWR spent fuel, high-level and other materials. This programmer's guide completes the documentation for the LWR Quantities Data Base, the user's guide having been published previously. The PC data base itself may be requested from the Oak Ridge National Laboratory, using the order form provided in Volume 1 of publication DOE/RW-0184

Interaction between scene-based and array-based contextual cueing.

Science.gov (United States)

Rosenbaum, Gail M; Jiang, Yuhong V

2013-07-01

Contextual cueing refers to the cueing of spatial attention by repeated spatial context. Previous studies have demonstrated distinctive properties of contextual cueing by background scenes and by an array of search items. Whereas scene-based contextual cueing reflects explicit learning of the scene-target association, array-based contextual cueing is supported primarily by implicit learning. In this study, we investigated the interaction between scene-based and array-based contextual cueing. Participants searched for a target that was predicted by both the background scene and the locations of distractor items. We tested three possible patterns of interaction: (1) The scene and the array could be learned independently, in which case cueing should be expressed even when only one cue was preserved; (2) the scene and array could be learned jointly, in which case cueing should occur only when both cues were preserved; (3) overshadowing might occur, in which case learning of the stronger cue should preclude learning of the weaker cue. In several experiments, we manipulated the nature of the contextual cues present during training and testing. We also tested explicit awareness of scenes, scene-target associations, and arrays. The results supported the overshadowing account: Specifically, scene-based contextual cueing precluded array-based contextual cueing when both were predictive of the location of a search target. We suggest that explicit, endogenous cues dominate over implicit cues in guiding spatial attention.

Brain-Based Learning and Standards-Based Elementary Science.

Science.gov (United States)

Konecki, Loretta R.; Schiller, Ellen

This paper explains how brain-based learning has become an area of interest to elementary school science teachers, focusing on the possible relationships between, and implications of, research on brain-based learning to the teaching of science education standards. After describing research on the brain, the paper looks at three implications from…

BEAT: A Web-Based Boolean Expression Fault-Based Test Case Generation Tool

Science.gov (United States)

Chen, T. Y.; Grant, D. D.; Lau, M. F.; Ng, S. P.; Vasa, V. R.

2006-01-01

BEAT is a Web-based system that generates fault-based test cases from Boolean expressions. It is based on the integration of our several fault-based test case selection strategies. The generated test cases are considered to be fault-based, because they are aiming at the detection of particular faults. For example, when the Boolean expression is in…

Rule-Based and Case-Based Reasoning in Housing Prices

OpenAIRE

Gabrielle Gayer; Itzhak Gilboa; Offer Lieberman

2004-01-01

People reason about real-estate prices both in terms of general rules and in terms of analogies to similar cases. We propose to empirically test which mode of reasoning fits the data better. To this end, we develop the statistical techniques required for the estimation of the case-based model. It is hypothesized that case-based reasoning will have relatively more explanatory power in databases of rental apartments, whereas rule-based reasoning will have a relative advantage in sales data. We ...

Object-Based Benefits without Object-Based Representations

OpenAIRE

Alvarez, George Angelo; Fougnie, Daryl; Cormiea, Sarah M

2012-01-01

The organization of visual information into objects strongly influences visual memory: Displays with objects defined by two features (e.g. color, orientation) are easier to remember than displays with twice as many objects defined by one feature (Olson & Jiang, 2002). Existing theories suggest that this ‘object-benefit’ is based on object-based limitations in working memory: because a limited number of objects can be stored, packaging features together so that fewer objects have to be remembe...

An Ontology-Based Tourism Recommender System Based on Spreading Activation Model

Science.gov (United States)

Bahramian, Z.; Abbaspour, R. Ali

2015-12-01

A tourist has time and budget limitations; hence, he needs to select points of interest (POIs) optimally. Since the available information about POIs is overloading, it is difficult for a tourist to select the most appreciate ones considering preferences. In this paper, a new travel recommender system is proposed to overcome information overload problem. A recommender system (RS) evaluates the overwhelming number of POIs and provides personalized recommendations to users based on their preferences. A content-based recommendation system is proposed, which uses the information about the user's preferences and POIs and calculates a degree of similarity between them. It selects POIs, which have highest similarity with the user's preferences. The proposed content-based recommender system is enhanced using the ontological information about tourism domain to represent both the user profile and the recommendable POIs. The proposed ontology-based recommendation process is performed in three steps including: ontology-based content analyzer, ontology-based profile learner, and ontology-based filtering component. User's feedback adapts the user's preferences using Spreading Activation (SA) strategy. It shows the proposed recommender system is effective and improves the overall performance of the traditional content-based recommender systems.

AN ONTOLOGY-BASED TOURISM RECOMMENDER SYSTEM BASED ON SPREADING ACTIVATION MODEL

Directory of Open Access Journals (Sweden)

Z. Bahramian

2015-12-01

Full Text Available A tourist has time and budget limitations; hence, he needs to select points of interest (POIs optimally. Since the available information about POIs is overloading, it is difficult for a tourist to select the most appreciate ones considering preferences. In this paper, a new travel recommender system is proposed to overcome information overload problem. A recommender system (RS evaluates the overwhelming number of POIs and provides personalized recommendations to users based on their preferences. A content-based recommendation system is proposed, which uses the information about the user’s preferences and POIs and calculates a degree of similarity between them. It selects POIs, which have highest similarity with the user’s preferences. The proposed content-based recommender system is enhanced using the ontological information about tourism domain to represent both the user profile and the recommendable POIs. The proposed ontology-based recommendation process is performed in three steps including: ontology-based content analyzer, ontology-based profile learner, and ontology-based filtering component. User’s feedback adapts the user’s preferences using Spreading Activation (SA strategy. It shows the proposed recommender system is effective and improves the overall performance of the traditional content-based recommender systems.

Contests versus Norms: Implications of Contest-Based and Norm-Based Intervention Techniques.

Science.gov (United States)

Bergquist, Magnus; Nilsson, Andreas; Hansla, André

2017-01-01

Interventions using either contests or norms can promote environmental behavioral change. Yet research on the implications of contest-based and norm-based interventions is lacking. Based on Goal-framing theory, we suggest that a contest-based intervention frames a gain goal promoting intensive but instrumental behavioral engagement. In contrast, the norm-based intervention was expected to frame a normative goal activating normative obligations for targeted and non-targeted behavior and motivation to engage in pro-environmental behaviors in the future. In two studies participants ( n = 347) were randomly assigned to either a contest- or a norm-based intervention technique. Participants in the contest showed more intensive engagement in both studies. Participants in the norm-based intervention tended to report higher intentions for future energy conservation (Study 1) and higher personal norms for non-targeted pro-environmental behaviors (Study 2). These findings suggest that contest-based intervention technique frames a gain goal, while norm-based intervention frames a normative goal.

Contests versus Norms: Implications of Contest-Based and Norm-Based Intervention Techniques

Directory of Open Access Journals (Sweden)

Magnus Bergquist

2017-11-01

Full Text Available Interventions using either contests or norms can promote environmental behavioral change. Yet research on the implications of contest-based and norm-based interventions is lacking. Based on Goal-framing theory, we suggest that a contest-based intervention frames a gain goal promoting intensive but instrumental behavioral engagement. In contrast, the norm-based intervention was expected to frame a normative goal activating normative obligations for targeted and non-targeted behavior and motivation to engage in pro-environmental behaviors in the future. In two studies participants (n = 347 were randomly assigned to either a contest- or a norm-based intervention technique. Participants in the contest showed more intensive engagement in both studies. Participants in the norm-based intervention tended to report higher intentions for future energy conservation (Study 1 and higher personal norms for non-targeted pro-environmental behaviors (Study 2. These findings suggest that contest-based intervention technique frames a gain goal, while norm-based intervention frames a normative goal.

Embracing a competency-based specialty curriculum for community-based nursing roles.

Science.gov (United States)

Levin, Pamela F; Swider, Susan M; Breakwell, Susan; Cowell, Julia M; Reising, Virginia

2013-01-01

The Quad Council competencies for public health nursing (PHN) provide guidance in developing curricula at both the generalist and specialist level. However, these competencies are based on nursing roles in traditional public health agencies and community/public health is defined more broadly than official agency practice. The question arises as to whether community-based specialties require largely the same knowledge and skill set as PHN. The purpose of the competency cross-mapping project reported here was to (a) assess the intersection of the Quad Council competencies with four community-based specialties and (b) ensure the appropriateness of a Quad Council-based curriculum to prepare graduates across these four specialties (home health, occupational health, environmental health, and school nursing). This article details the multistep cross-mapping process, including validation with practice leaders. Results indicate strong alignment of community-based specialty competencies with Quad Council competencies. Community-based specialty-specific content that did not align well is identified, along with examples of didactic and clinical strategies to address gaps. This work indicates that a Quad Council-based curriculum is appropriate to prepare graduates in community-based specialties when attention to the specialty-specific competencies in the clinical setting is included. This work guides the development of a doctorate of nursing practice curriculum in PHN, encompassing the four additional community-based specialties. © 2013 Wiley Periodicals, Inc.

Foundry based approach for InP based PIC development

NARCIS (Netherlands)

Smit, M.K.

2014-01-01

Europe is making significant investments in development of generic photonic foundry platform infrastructures for InP-based and Silicon Photonic ICs. Here we present the present status for the InP-based JePPIX platform.

Managing the Gap between Curriculum Based and Problem Based Learning

DEFF Research Database (Denmark)

Bygholm, Ann; Buus, Lillian

2009-01-01

/or but rather both/and. In this paper we describe an approach to design and delivery of online courses in computer science which on the one hand is based on a specified curriculum and on the other hand gives room for different learning strategies, problem based learning being one of them. We discuss......Traditionally there has been a clear distinction between curriculum based and problem based approaches to accomplish learning. Preferred approaches depend of course on conviction, culture, traditions and also on the specific learning situation. We will argue that it is not a question of either...

Groebner Bases Based Verification Solution for SystemVerilog Concurrent Assertions

Directory of Open Access Journals (Sweden)

Ning Zhou

2014-01-01

of polynomial ring algebra to perform SystemVerilog assertion verification over digital circuit systems. This method is based on Groebner bases theory and sequential properties checking. We define a constrained subset of SVAs so that an efficient polynomial modeling mechanism for both circuit descriptions and assertions can be applied. We present an algorithm framework based on the algebraic representations using Groebner bases for concurrent SVAs checking. Case studies show that computer algebra can provide canonical symbolic representations for both assertions and circuit designs and can act as a novel solver engine from the viewpoint of symbolic computation.

A Computer-Based Simulation of an Acid-Base Titration

Science.gov (United States)

Boblick, John M.

1971-01-01

Reviews the advantages of computer simulated environments for experiments, referring in particular to acid-base titrations. Includes pre-lab instructions and a sample computer printout of a student's use of an acid-base simulation. Ten references. (PR)

Research on the comparison of performance-based concept and force-based concept

Science.gov (United States)

Wu, Zeyu; Wang, Dongwei

2011-03-01

There are two ideologies about structure design: force-based concept and performance-based concept. Generally, if the structure operates during elastic stage, the two philosophies usually attain the same results. But beyond that stage, the shortage of force-based method is exposed, and the merit of performance-based is displayed. Pros and cons of each strategy are listed herein, and then which structure is best suitable to each method analyzed. At last, a real structure is evaluated by adaptive pushover method to verify that performance-based method is better than force-based method.

Priority-Based Hierarchical Operational Management for Multiagent-Based Microgrids

Directory of Open Access Journals (Sweden)

Takumi Kato

2014-03-01

Full Text Available Electricity consumption in the world is constantly increasing, making our lives become more and more dependent on electricity. There are several new paradigms proposed in the field of power grids. In Japan, especially after the Great East Japan Earthquake in March 2011, the new power grid paradigms are expected to be more resilient to survive several difficulties during disasters. In this paper, we focus on microgrids and propose priority-based hierarchical operational management for multiagent-based microgrids. The proposed management is a new multiagent-based load shedding scheme and multiagent-based hierarchical architecture to realize such resilient microgrids. We developed a prototype system and performed an evaluation of the proposed management using the developed system. The result of the evaluation shows the effectiveness of our proposal in power shortage situations, such as disasters.

Feature-based attention is functionally distinct from relation-based attention: The double dissociation between color-based capture and color-relation-based capture of attention.

Science.gov (United States)

Du, Feng; Jiao, Jun

2016-04-01

The present study used a spatial blink task and a cuing task to examine the boundary between feature-based capture and relation-based capture. Feature-based capture occurs when distractors match the target feature such as target color. The occurrence of relation-based capture is contingent upon the feature relation between target and distractor (e.g., color relation). The results show that color distractors that match the target-nontarget color relation do not consistently capture attention when they appear outside of the attentional window, but distractors appearing outside the attentional window that match the target color consistently capture attention. In contrast, color distractors that best match the target-nontarget color relation but not the target color, are more likely to capture attention when they appear within the attentional window. Consistently, color cues that match the target-nontarget color relation produce a cuing effect when they appear within the attentional window, while target-color matched cues do not. Such a double dissociation between color-based capture and color-relation-based capture indicates functionally distinct mechanisms for these 2 types of attentional selection. This also indicates that the spatial blink task and the uninformative cuing task are measuring distinctive aspects of involuntary attention. (PsycINFO Database Record (c) 2016 APA, all rights reserved).

Skull base tumours

Energy Technology Data Exchange (ETDEWEB)

Borges, Alexandra [Instituto Portugues de Oncologia Francisco Gentil, Servico de Radiologia, Rua Professor Lima Basto, 1093 Lisboa Codex (Portugal)], E-mail: borgesalexandra@clix.pt

2008-06-15

With the advances of cross-sectional imaging radiologists gained an increasing responsibility in the management of patients with skull base pathology. As this anatomic area is hidden to clinical exam, surgeons and radiation oncologists have to rely on imaging studies to plan the most adequate treatment. To fulfil these endeavour radiologists need to be knowledgeable about skull base anatomy, about the main treatment options available, their indications and contra-indications and needs to be aware of the wide gamut of pathologies seen in this anatomic region. This article will provide a radiologists' friendly approach to the central skull base and will review the most common central skull base tumours and tumours intrinsic to the bony skull base.

Skull base tumours

International Nuclear Information System (INIS)

Borges, Alexandra

2008-01-01

With the advances of cross-sectional imaging radiologists gained an increasing responsibility in the management of patients with skull base pathology. As this anatomic area is hidden to clinical exam, surgeons and radiation oncologists have to rely on imaging studies to plan the most adequate treatment. To fulfil these endeavour radiologists need to be knowledgeable about skull base anatomy, about the main treatment options available, their indications and contra-indications and needs to be aware of the wide gamut of pathologies seen in this anatomic region. This article will provide a radiologists' friendly approach to the central skull base and will review the most common central skull base tumours and tumours intrinsic to the bony skull base

State-based versus reward-based motivation in younger and older adults.

Science.gov (United States)

Worthy, Darrell A; Cooper, Jessica A; Byrne, Kaileigh A; Gorlick, Marissa A; Maddox, W Todd

2014-12-01

Recent decision-making work has focused on a distinction between a habitual, model-free neural system that is motivated toward actions that lead directly to reward and a more computationally demanding goal-directed, model-based system that is motivated toward actions that improve one's future state. In this article, we examine how aging affects motivation toward reward-based versus state-based decision making. Participants performed tasks in which one type of option provided larger immediate rewards but the alternative type of option led to larger rewards on future trials, or improvements in state. We predicted that older adults would show a reduced preference for choices that led to improvements in state and a greater preference for choices that maximized immediate reward. We also predicted that fits from a hybrid reinforcement-learning model would indicate greater model-based strategy use in younger than in older adults. In line with these predictions, older adults selected the options that maximized reward more often than did younger adults in three of the four tasks, and modeling results suggested reduced model-based strategy use. In the task where older adults showed similar behavior to younger adults, our model-fitting results suggested that this was due to the utilization of a win-stay-lose-shift heuristic rather than a more complex model-based strategy. Additionally, within older adults, we found that model-based strategy use was positively correlated with memory measures from our neuropsychological test battery. We suggest that this shift from state-based to reward-based motivation may be due to age related declines in the neural structures needed for more computationally demanding model-based decision making.

Image based Monument Recognition using Graph based Visual Saliency

DEFF Research Database (Denmark)

Kalliatakis, Grigorios; Triantafyllidis, Georgios

2013-01-01

This article presents an image-based application aiming at simple image classification of well-known monuments in the area of Heraklion, Crete, Greece. This classification takes place by utilizing Graph Based Visual Saliency (GBVS) and employing Scale Invariant Feature Transform (SIFT) or Speeded......, the images have been previously processed according to the Graph Based Visual Saliency model in order to keep either SIFT or SURF features corresponding to the actual monuments while the background “noise” is minimized. The application is then able to classify these images, helping the user to better...

Convergent Filter Bases

Directory of Open Access Journals (Sweden)

Coghetto Roland

2015-09-01

Full Text Available We are inspired by the work of Henri Cartan [16], Bourbaki [10] (TG. I Filtres and Claude Wagschal [34]. We define the base of filter, image filter, convergent filter bases, limit filter and the filter base of tails (fr: filtre des sections.

QuickBase

CERN Document Server

Conner, Nancy

2007-01-01

Ready to put Intuit's QuickBase to work? Our new Missing Manual shows you how to capture, modify, share, and manage data and documents with this web-based data-sharing program quickly and easily. No longer do you have to coordinate your team through a blizzard of emails or play frustrating games of "guess which document is the right one."QuickBase saves your organization time and money, letting you manage and share the information that makes your business tick: sales figures, project timelines, drafts of documents, purchase or work requests--whatever information you need to keep business flowi

Merits of using andalusite-based refractories compared to bauxite-based refractories

OpenAIRE

Nyoka, M.; Brazier, D.; Courtney, T.; Parry, R.A.

2013-01-01

Historically bauxite-based refractories have been used in applications where andalusite-based refractories could work. Bauxite-based refractories were chosen over andalusite-based refractories mainly because of the availability of low-cost Chinese bauxite and also because many furnaces were designed by international companies that cannot easily access high-quality products. Currently, the availability of low-cost bauxite is under threat as a result of high export duties and tariffs as well as...

Swarm-based medicine.

Science.gov (United States)

Putora, Paul Martin; Oldenburg, Jan

2013-09-19

Occasionally, medical decisions have to be taken in the absence of evidence-based guidelines. Other sources can be drawn upon to fill in the gaps, including experience and intuition. Authorities or experts, with their knowledge and experience, may provide further input--known as "eminence-based medicine". Due to the Internet and digital media, interactions among physicians now take place at a higher rate than ever before. With the rising number of interconnected individuals and their communication capabilities, the medical community is obtaining the properties of a swarm. The way individual physicians act depends on other physicians; medical societies act based on their members. Swarm behavior might facilitate the generation and distribution of knowledge as an unconscious process. As such, "swarm-based medicine" may add a further source of information to the classical approaches of evidence- and eminence-based medicine. How to integrate swarm-based medicine into practice is left to the individual physician, but even this decision will be influenced by the swarm.

Touch BASE

CERN Multimedia

Antonella Del Rosso

2015-01-01

In a recent Nature article (see here), the BASE collaboration reported the most precise comparison of the charge-to-mass ratio of the proton to its antimatter equivalent, the antiproton. This result is just the beginning and many more challenges lie ahead.   CERN's AD Hall, where the BASE experiment is set-up. The Baryon Antibaryon Symmetry Experiment (BASE) was approved in June 2013 and was ready to take data in August 2014. During these 14 months, the BASE collaboration worked hard to set up its four cryogenic Penning traps, which are the heart of the whole experiment. As their name indicates, these magnetic devices are used to trap antiparticles – antiprotons coming from the Antiproton Decelerator – and particles of matter – negative hydrogen ions produced in the system by interaction with a degrader that slows the antiprotons down, allowing scientists to perform their measurements. “We had very little time to set up the wh...

Evaluation of radiosurgery techniques–Cone-based linac radiosurgery vs tomotherapy-based radiosurgery

International Nuclear Information System (INIS)

Yip, Ho Yin; Mui, Wing Lun A.; Lee, Joseph W.Y.; Fung, Winky Wing Ki; Chan, Jocelyn M.T.; Chiu, G.; Law, Maria Y.Y.

2013-01-01

Performances of radiosurgery of intracranial lesions between cone-based Linac system and Tomotherapy-based system were compared in terms of dosimetry and time. Twelve patients with single intracranial lesion treated with cone-based Linac radiosurgery system from 2005 to 2009 were replanned for Tomotherapy-based radiosurgery treatment. The conformity index, homogeneity index (HI), and gradient score index (GSI) of each case was calculated. The Wilcoxon matched-pair test was used to compare the 3 indices between both systems. The cases with regular target (n = 6) and those with irregular target (n = 6) were further analyzed separately. The estimated treatment time between both systems was also compared. Significant differences were found in HI (p = 0.05) and in GSI (p = 0.03) for the whole group. Cone-based radiosurgery was better in GSI whereas Tomotherapy-based radiosurgery was better in HI. Cone-based radiosurgery was better in conformity index (p = 0.03) and GSI (p = 0.03) for regular targets, whereas Tomotherapy-based radiosurgery system performed significantly better in HI (p = 0.03) for irregular targets. The estimated total treatment time for Tomotherapy-based radiosurgery ranged from 24 minutes to 35 minutes, including 15 minutes of pretreatment megavoltage computed tomography (MVCT) and image registration, whereas that for cone-based radiosurgery ranged from 15 minutes for 1 isocenter to 75 minutes for 5 isocenters. As a rule of thumb, Tomotherapy-based radiosurgery system should be the first-line treatment for irregular lesions because of better dose homogeneity and shorter treatment time. Cone-based Linac radiosurgery system should be the treatment of choice for regular targets because of the better dose conformity, rapid dose fall-off, and reasonable treatment time

Evaluation of radiosurgery techniques–Cone-based linac radiosurgery vs tomotherapy-based radiosurgery

Energy Technology Data Exchange (ETDEWEB)

Yip, Ho Yin, E-mail: hoyinyip@yahoo.com.hk [Department of Radiotherapy, Hong Kong Sanatorium and Hospital, Happy Valley, Hong Kong (China); Mui, Wing Lun A.; Lee, Joseph W.Y.; Fung, Winky Wing Ki; Chan, Jocelyn M.T.; Chiu, G. [Department of Radiotherapy, Hong Kong Sanatorium and Hospital, Happy Valley, Hong Kong (China); Law, Maria Y.Y. [Medical Physics and Research Department, Hong Kong Sanatorium and Hospital, Happy Valley, Hong Kong (China)

2013-07-01

Performances of radiosurgery of intracranial lesions between cone-based Linac system and Tomotherapy-based system were compared in terms of dosimetry and time. Twelve patients with single intracranial lesion treated with cone-based Linac radiosurgery system from 2005 to 2009 were replanned for Tomotherapy-based radiosurgery treatment. The conformity index, homogeneity index (HI), and gradient score index (GSI) of each case was calculated. The Wilcoxon matched-pair test was used to compare the 3 indices between both systems. The cases with regular target (n = 6) and those with irregular target (n = 6) were further analyzed separately. The estimated treatment time between both systems was also compared. Significant differences were found in HI (p = 0.05) and in GSI (p = 0.03) for the whole group. Cone-based radiosurgery was better in GSI whereas Tomotherapy-based radiosurgery was better in HI. Cone-based radiosurgery was better in conformity index (p = 0.03) and GSI (p = 0.03) for regular targets, whereas Tomotherapy-based radiosurgery system performed significantly better in HI (p = 0.03) for irregular targets. The estimated total treatment time for Tomotherapy-based radiosurgery ranged from 24 minutes to 35 minutes, including 15 minutes of pretreatment megavoltage computed tomography (MVCT) and image registration, whereas that for cone-based radiosurgery ranged from 15 minutes for 1 isocenter to 75 minutes for 5 isocenters. As a rule of thumb, Tomotherapy-based radiosurgery system should be the first-line treatment for irregular lesions because of better dose homogeneity and shorter treatment time. Cone-based Linac radiosurgery system should be the treatment of choice for regular targets because of the better dose conformity, rapid dose fall-off, and reasonable treatment time.

Nasal base narrowing: the combined alar base excision technique.

Science.gov (United States)

Foda, Hossam M T

2007-01-01

To evaluate the role of the combined alar base excision technique in narrowing the nasal base and correcting excessive alar flare. The study included 60 cases presenting with a wide nasal base and excessive alar flaring. The surgical procedure combined an external alar wedge resection with an internal vestibular floor excision. All cases were followed up for a mean of 32 (range, 12-144) months. Nasal tip modification and correction of any preexisting caudal septal deformities were always completed before the nasal base narrowing. The mean width of the external alar wedge excised was 7.2 (range, 4-11) mm, whereas the mean width of the sill excision was 3.1 (range, 2-7) mm. Completing the internal excision first resulted in a more conservative external resection, thus avoiding any blunting of the alar-facial crease. No cases of postoperative bleeding, infection, or keloid formation were encountered, and the external alar wedge excision healed with an inconspicuous scar that was well hidden in the depth of the alar-facial crease. Finally, the risk of notching of the alar rim, which can occur at the junction of the external and internal excisions, was significantly reduced by adopting a 2-layered closure of the vestibular floor (P = .01). The combined alar base excision resulted in effective narrowing of the nasal base with elimination of excessive alar flare. Commonly feared complications, such as blunting of the alar-facial crease or notching of the alar rim, were avoided by using simple modifications in the technique of excision and closure.

Developing effective web-based regional anesthesia education: a randomized study evaluating case-based versus non-case-based module design.

Science.gov (United States)

Kopp, Sandra L; Smith, Hugh M

2011-01-01

Little is known about the use of Web-based education in regional anesthesia training. Benefits of Web-based education include the ability to standardize learning material quality and content, build appropriate learning progressions, use interactive multimedia technologies, and individualize delivery of course materials. The goals of this investigation were (1) to determine whether module design influences regional anesthesia knowledge acquisition, (2) to characterize learner preference patterns among anesthesia residents, and (3) to determine whether learner preferences play a role in knowledge acquisition. Direct comparison of knowledge assessments, learning styles, and learner preferences will be made between an interactive case-based and a traditional textbook-style module design. Forty-three Mayo Clinic anesthesiology residents completed 2 online modules, a knowledge pretest, posttest, an Index of Learning Styles assessment, and a participant satisfaction survey. Interscalene and lumbar plexus regional techniques were selected as the learning content for 4 Web modules constructed using the Blackboard Vista coursework application. One traditional textbook-style module and 1 interactive case-based module were designed for each of the interscalene and lumbar plexus techniques. Participants scored higher on the postmodule knowledge assessment for both of the interscalene and lumbar plexus modules. Postmodule knowledge performance scores were independent of both module design (interactive case-based versus traditional textbook style) and learning style preferences. However, nearly all participants reported a preference for Web-based learning and believe that it should be used in anesthesia resident education. Participants did not feel that Web-base learning should replace the current lecture-based curriculum. All residents scored higher on the postmodule knowledge assessment, but this improvement was independent of the module design and individual learning styles

Mindfulness-based and acceptance-based interventions in sport and performance contexts.

Science.gov (United States)

Gardner, Frank L; Moore, Zella E

2017-08-01

Since mindfulness-based and acceptance-based practice models were first conceptualized and applied in sport in an attempt to enhance performance and overall well-being of athletes and performers, these state-of-the-art theoretical and practice models have substantially broadened our knowledge base and have been successfully incorporated into sport and performance practice domains worldwide. Evolving from a sound empirical foundation, mindfulness-based and acceptance-based models in sport psychology have accumulated a strong basic and applied empirical foundation. In the nearly 20 years since their incorporation in the context of sport, empirical findings have demonstrated efficacious outcomes associated with performance and personal well-being, as well as supported their theorized mechanisms of change. Particularly as sport and performance environments increasingly call upon practitioners to provide more comprehensive care to clientele, including a range of care from performance enhancement and maintenance, to general personal well-being, to subclinical and clinical issues, mindfulness-based and acceptance-based practitioners have the tools to offer robust, empirically informed interventions that can enhance skills and quality of life, and/or ameliorate personal struggles. Copyright © 2017 Elsevier Ltd. All rights reserved.

VO2-based radiative thermal transistor with a semi-transparent base

Science.gov (United States)

Prod'homme, Hugo; Ordonez-Miranda, Jose; Ezzahri, Younès; Drévillon, Jérémie; Joulain, Karl

2018-05-01

We study a radiative thermal transistor analogous to an electronic one made of a VO2 base placed between two silica semi-infinite plates playing the roles of the transistor collector and emitter. The fact that VO2 exhibits an insulator to metal transition is exploited to modulate and/or amplify heat fluxes between the emitter and the collector, by applying a thermal current on the VO2 base. We extend the work of precedent studies considering the case where the base can be semi-transparent so that heat can be exchanged directly between the collector and the emitter. Both near and far field cases are considered leading to 4 typical regimes resulting from the fact that the emitter-base and base-collector separation distances can be larger or smaller than the thermal wavelength for a VO2 layer opaque or semi-transparent. Thermal currents variations with the base temperatures are calculated and analyzed. It is found that the transistor can operate in an amplification mode as already stated in [1] or in a switching mode as seen in [2]. An optimum configuration for the base thickness and separation distance maximizing the thermal transistor modulation factor is found.

Facilitators' perceptions of problem-based learning and community-based education

Directory of Open Access Journals (Sweden)

Annali E Fichardt

2000-10-01

Full Text Available In 1997 the School for Nursing, University of the Orange Free State, changed from the traditional lecture method of teaching to problem-based learning and from a curative to a community-based approach. Lecturers from a traditional environment became facilitators and new skills such as listening, dialogue, negotiation, counselling and problemsolving were expected from them. Besides the role change, the environment changed from a structural classroom to an unstructured community. The aim of this research was to determine the perceptions and experiences of facilitators in problem-based learning and community-base education. *Please note: This is a reduced version of the abstract. Please refer to PDF for full text.

Frame-based safety analysis approach for decision-based errors

International Nuclear Information System (INIS)

Fan, Chin-Feng; Yihb, Swu

1997-01-01

A frame-based approach is proposed to analyze decision-based errors made by automatic controllers or human operators due to erroneous reference frames. An integrated framework, Two Frame Model (TFM), is first proposed to model the dynamic interaction between the physical process and the decision-making process. Two important issues, consistency and competing processes, are raised. Consistency between the physical and logic frames makes a TFM-based system work properly. Loss of consistency refers to the failure mode that the logic frame does not accurately reflect the state of the controlled processes. Once such failure occurs, hazards may arise. Among potential hazards, the competing effect between the controller and the controlled process is the most severe one, which may jeopardize a defense-in-depth design. When the logic and physical frames are inconsistent, conventional safety analysis techniques are inadequate. We propose Frame-based Fault Tree; Analysis (FFTA) and Frame-based Event Tree Analysis (FETA) under TFM to deduce the context for decision errors and to separately generate the evolution of the logical frame as opposed to that of the physical frame. This multi-dimensional analysis approach, different from the conventional correctness-centred approach, provides a panoramic view in scenario generation. Case studies using the proposed techniques are also given to demonstrate their usage and feasibility

From conventional software based systems to knowledge based systems

International Nuclear Information System (INIS)

Bologna, S.

1995-01-01

Even if todays nuclear power plants have a very good safety record, there is a continuous search for still improving safety. One direction of this effort address operational safety, trying to improve the handling of disturbances and accidents partly by further automation, partly by creating a better control room environment, providing the operator with intelligent support systems to help in the decision making process. Introduction of intelligent computerised operator support systems has proved to be an efficient way of improving the operators performance. A number of systems have been developed worldwide, assisting in tasks like process fault detection and diagnosis, selection and implementation of proper remedial actions. Unfortunately, the use of Knowledge Based Systems (KBSs), introduces a new dimension to the problem of the licensing process. KBSs, despite the different technology employed, are still nothing more than a computer program. Unfortunately, quite a few people building knowledge based systems seem to ignore the many good programming practices that have evolved over the years for producing traditional computer programs. In this paper the author will try to point out similarities and differences between conventional software based systems, and knowledge based systems, introducing also the concept of model based reasoning. (orig.) (25 refs., 2 figs.)

Case-based reasoning

CERN Document Server

Kolodner, Janet

1993-01-01

Case-based reasoning is one of the fastest growing areas in the field of knowledge-based systems and this book, authored by a leader in the field, is the first comprehensive text on the subject. Case-based reasoning systems are systems that store information about situations in their memory. As new problems arise, similar situations are searched out to help solve these problems. Problems are understood and inferences are made by finding the closest cases in memory, comparing and contrasting the problem with those cases, making inferences based on those comparisons, and asking questions whe

Lotus Base

DEFF Research Database (Denmark)

Mun, Terry; Bachmann, Asger; Gupta, Vikas

2016-01-01

exploration of Lotus genomic and transcriptomic data. Equally important are user-friendly in-browser tools designed for data visualization and interpretation. Here, we present Lotus Base, which opens to the research community a large, established LORE1 insertion mutant population containing an excess of 120...... such data, allowing users to construct, visualize, and annotate co-expression gene networks. Lotus Base takes advantage of modern advances in browser technology to deliver powerful data interpretation for biologists. Its modular construction and publicly available application programming interface enable...... developers to tap into the wealth of integrated Lotus data. Lotus Base is freely accessible at: https://lotus.au.dk....

Three dimensional pattern recognition using feature-based indexing and rule-based search

Science.gov (United States)

Lee, Jae-Kyu

In flexible automated manufacturing, robots can perform routine operations as well as recover from atypical events, provided that process-relevant information is available to the robot controller. Real time vision is among the most versatile sensing tools, yet the reliability of machine-based scene interpretation can be questionable. The effort described here is focused on the development of machine-based vision methods to support autonomous nuclear fuel manufacturing operations in hot cells. This thesis presents a method to efficiently recognize 3D objects from 2D images based on feature-based indexing. Object recognition is the identification of correspondences between parts of a current scene and stored views of known objects, using chains of segments or indexing vectors. To create indexed object models, characteristic model image features are extracted during preprocessing. Feature vectors representing model object contours are acquired from several points of view around each object and stored. Recognition is the process of matching stored views with features or patterns detected in a test scene. Two sets of algorithms were developed, one for preprocessing and indexed database creation, and one for pattern searching and matching during recognition. At recognition time, those indexing vectors with the highest match probability are retrieved from the model image database, using a nearest neighbor search algorithm. The nearest neighbor search predicts the best possible match candidates. Extended searches are guided by a search strategy that employs knowledge-base (KB) selection criteria. The knowledge-based system simplifies the recognition process and minimizes the number of iterations and memory usage. Novel contributions include the use of a feature-based indexing data structure together with a knowledge base. Both components improve the efficiency of the recognition process by improved structuring of the database of object features and reducing data base size

NSCT BASED LOCAL ENHANCEMENT FOR ACTIVE CONTOUR BASED IMAGE SEGMENTATION APPLICATION

Directory of Open Access Journals (Sweden)

Hiren Mewada

2010-08-01

Full Text Available Because of cross-disciplinary nature, Active Contour modeling techniques have been utilized extensively for the image segmentation. In traditional active contour based segmentation techniques based on level set methods, the energy functions are defined based on the intensity gradient. This makes them highly sensitive to the situation where the underlying image content is characterized by image nonhomogeneities due to illumination and contrast condition. This is the most difficult problem to make them as fully automatic image segmentation techniques. This paper introduces one of the approaches based on image enhancement to this problem. The enhanced image is obtained using NonSubsampled Contourlet Transform, which improves the edges strengths in the direction where the illumination is not proper and then active contour model based on level set technique is utilized to segment the object. Experiment results demonstrate that proposed method can be utilized along with existing active contour model based segmentation method under situation characterized by intensity non-homogeneity to make them fully automatic.

Data base EQDB - data base of the qualified equipment's for NPP

International Nuclear Information System (INIS)

Rovny, K.

2009-01-01

In the contribution, there is presented the project of the data base for qualified equipment's for nuclear power plants. The data base is operated by the 'Certification body which certified the products - the chosen equipment's for nuclear power plants', reg. No. P-028, at VUJE, Inc. Trnava. Data base will serve to the designers, the operators of the nuclear power plants and the workers from Nuclear regulatory authority of the Slovak Republic as a source of information about the state of concrete type equipment's qualification. In the first part of the contribution, there is information about the legislation and technical requirements for equipment's qualification, the way of demonstration and importance of the qualification for the operator. In the next part, there is presented the own structure of data base and the works with own data base regarding the examples of concrete equipment's. The data base will be accessible after the free registration on address WWW.EQDB.sk from 1.5.2009

Evidence-based radiography

International Nuclear Information System (INIS)

Hafslund, Bjorg; Clare, Judith; Graverholt, Birgitte; Wammen Nortvedt, Monica

2008-01-01

Evidence-based practice (EBP) offers the integration of the best research evidence with clinical knowledge and expertise and patient values. EBP is a well known term in health care. This paper discusses the implementation of EBP into radiography and introduces the term evidence-based radiography. Evidence-based radiography is radiography informed and based on the combination of clinical expertise and the best available research-based evidence, patient preferences and resources available. In Norway, EBP in radiography is being debated and radiographers are discussing the challenges of implementing EBP in both academic and clinical practice. This discussion paper explains why EBP needs to be a basis for a radiography curriculum and a part of radiographers' practice. We argue that Norwegian radiographers must increase participation in research and developing practice within their specific radiographic domain

Competency-Based Teaching in Radiology - Implementation and Evaluation of Interactive Workstation-Based Learning to Apply NKLM-Based Content.

Science.gov (United States)

Koestner, Wolfgang; Otten, Wiebke; Kaireit, Till; Wacker, Frank K; Dettmer, Sabine

2017-11-01

Purpose  New teaching formats are required to implement competency-based teaching in radiology teaching. Therefore, we have established and evaluated two practical competency-based radiological courses. Materials and Methods  The courses were held in a multimedia room with 25 computers and a professional DICOM viewer. Students were taught basic image analysis and presented clinical cases with a DICOM viewer under supervision of an instructor using desktop monitoring software. Two courses (elective course and obligatory course) were evaluated by the students (n = 160 and n = 100) and instructors (n = 9) using an anonymized online survey. Results  Courses were evaluated positively by the students and instructors. From the perspective of the students, the courses increased understanding of cross-sectional anatomy (elective/obligatory course: 97 %/95 %) and radiologic findings (97 %/99 %). Furthermore, the course increased the students' interest in radiology (61 %/65 %). The students considered this way of teaching to be relevant to their future occupation (92 % of students in the obligatory course). The higher incidence of teacher-student interaction and the possibility of independent image analysis were rated positively. The majority of instructors did not observe increased distractibility due to the computers (67 %) or notice worse preparation for MC tests (56 %). However, 56 % of instructors reported greater preparation effort. Conclusion  Practical competency-based radiological teaching using a DICOM viewer is a feasible innovative approach with high acceptance among students and instructors. It fosters competency-based learning as proposed by the model curriculum of the German Radiological Society (DRG) and the National Competency-based Catalogue of Learning Objectives for Undergraduate Medical Education (NKLM). Key Points   · Practical competency-based radiological teaching is highly accepted by students and instructors

Cultural and Rhetorical Bases for communicating knowledge in web based communities

DEFF Research Database (Denmark)

Kampf, Constance; Kommers, Piet

2008-01-01

Cultural and Rhetorical Bases for communicating knowledge in web based communities How can we extend learner-centred theories for educational technology to include, for instance, the cultural and rhetorical backgrounds which influence participants in online communities as they engage in knowledge...... via web-based communities the intersection of culture and rhetoric in web-based communication rhetoric and discourse in the process of communicating knowledge via technology heuristics for knowledge communication from teaching in online forums connections between identity and knowledge communication...... This call for papers invites papers focused on theoretical frameworks or empirical research which highlights the cultural and/or rhetorical aspects of communicating knowledge in web based communities. We are looking for work that brings together methods and perspectives across disciplines...

Characteristics Data Base: Programmer's guide to the High-Level Waste Data Base

International Nuclear Information System (INIS)

Jones, K.E.; Salmon, R.

1990-08-01

The High-Level Waste Data Base is a menu-driven PC data base developed as part of OCRWM's technical data base on the characteristics of potential repository wastes, which also includes spent fuel and other materials. This programmer's guide completes the documentation for the High-Level Waste Data Base, the user's guide having been published previously. 3 figs

An Alternative Collaborative Supervision Practice between University-Based Teachers and School-Based Teachers

Science.gov (United States)

Steele, Annfrid R.

2017-01-01

There is an increased focus in teacher education on research-based teaching as a means to develop a more research-based professional knowledge. However, research from several Western countries shows that neither school-based nor university-based teachers are familiar with how to integrate research-based knowledge in professional teacher practice.…

Paper based electronics platform

KAUST Repository

Nassar, Joanna Mohammad; Sevilla, Galo Andres Torres; Hussain, Muhammad Mustafa

2017-01-01

A flexible and non-functionalized low cost paper-based electronic system platform fabricated from common paper, such as paper based sensors, and methods of producing paper based sensors, and methods of sensing using the paper based sensors

Cholinesterase-based biosensors.

Science.gov (United States)

Štěpánková, Šárka; Vorčáková, Katarína

2016-01-01

Recently, cholinesterase-based biosensors are widely used for assaying anticholinergic compounds. Primarily biosensors based on enzyme inhibition are useful analytical tools for fast screening of inhibitors, such as organophosphates and carbamates. The present review is aimed at compilation of the most important facts about cholinesterase based biosensors, types of physico-chemical transduction, immobilization strategies and practical applications.

Ornamental fish in pet stores in Greece: a threat to biodiversity?

Directory of Open Access Journals (Sweden)

I. PAPAVLASOPOULOU

2013-12-01

Full Text Available The aquarium trade has been recognized as an important pathway for the introduction of invasive species around the world. This study investigates the availability of ornamental fish species in ten large-size, centrally positioned aquarium stores that control a large share of imports and the Hellenic market chain, and aims to provide a provisional checklist on the aquarium fish trade in Greece. For each recorded species, additional data concerning various aspects (e.g. natural environment, native range, established as aliens, conservation status and threats to humans were collected from Fishbase, IUCN red list and the scientific literature. Overall, 326 fish species belonging to 64 families were reported according to the store labels. The majority of the species recorded were freshwater (66%, originating mainly from South America and Asia, while most of the marine species (26% had primarily an Indo-Pacific native distribution. Among the freshwater fishes, Cichlidae and Cyprinidae were the dominant families with 64 and 27 species, respectively, while the family Acanthuridae dominated within the marine fishes with ten species. The vast majority of both freshwater and marine species (>90% were tropical. Concerning the presence of alien species, 62 ornamental species have been established outside their natural range, with 22 of them positively confirmed as aliens in the European waters. Moreover, 25 species were listed in the critically endangered (CR, endangered (EN and vulnerable (VU categories of the IUCN red list. Even more surprisingly, for 192 species recorded, data were missing to assign their conservation status or had not been assessed at all. Finally, the majority of the species (84% were harmless to humans. However, 35 species (11% were recognised as potentially harmful (i.e. venomous, ciguatera poisoning, traumatogenic and two were found to be poisonous if consumed. In conclusion, the aquarium fish sector in Greece is practically

Assessing contaminant sensitivity of endangered and threatened aquatic species: Part III. Effluent toxicity tests

Science.gov (United States)

Dwyer, F.J.; Hardesty, D.K.; Henke, C.E.; Ingersoll, C.G.; Whites, D.W.; Augspurger, T.; Canfield, T.J.; Mount, D.R.; Mayer, F.L.

2005-01-01

Toxicity tests using standard effluent test procedures described by the U.S. Environmental Protection Agency were conducted with Ceriodaphnia dubia, fathead minnows (Pimephales promelas), and seven threatened and endangered (listed) fish species from four families: (1) Acipenseridae: shortnose sturgeon (Acipenser brevirostrum); (2) Catostomidae; razorback sucker (Xyrauchen texanus); (3) Cyprinidae: bonytail chub (Gila elegans), Cape Fear shiner (Notropis mekistocholas) Colorado pikeminnow (Ptychocheilus lucius), and spotfin chub (Cyprinella monacha); and (4) Poecillidae: Gila topminnow (Poeciliopsis occidentalis). We conducted 7-day survival and growth studies with embryo-larval fathead minnows and analogous exposures using the listed species. Survival and reproduction were also determined with C. dubia. Tests were conducted with carbaryl, ammonia-or a simulated effluent complex mixture of carbaryl, copper, 4-nonylphenol, pentachlorophenol and permethrin at equitoxic proportions. In addition, Cape Fear shiners and spotfin chub were tested using diazinon, copper, and chlorine. Toxicity tests were also conducted with field-collected effluents from domestic or industrial facilities. Bonytail chub and razorback suckers were tested with effluents collected in Arizona whereas effluent samples collected from North Carolina were tested with Cape Fear shiner, spotfin chub, and shortnose sturgeon. The fathead minnow 7-day effluent test was often a reliable estimator of toxic effects to the listed fishes. However, in 21 % of the tests, a listed species was more sensitive than fathead minnows. More sensitive species results varied by test so that usually no species was always more or less sensitive than fathead minnows. Only the Gila topminnow was consistently less sensitive than the fathead minnow. Listed fish species were protected 96% of the time when results for both fathead minnows and C. dubia were considered, thus reinforcing the value of standard whole

Commercial and game fish from the Dąbie lake (Poland and their infection of Paracoenogonimus ovatus (Digenea

Directory of Open Access Journals (Sweden)

Angelika Anna Linowska

2015-11-01

Full Text Available Paracoenogonimus ovatus is the parasite that infest wide definitive host range (predator birds and at least two intermediate hosts: molluscs (Viviparus viviparus, V. fasciatus and freshwater fish from eastern and central Europe. The larvae of the parasite (metacercariae go to the muscle and connective tissue, and at high intensity of infection to the internal organs and brain of fish. A total of 128 fishes were caught in autumn 2009 and 2014, by fishing boats operating in Lake Dąbie, which is one of the largest lakes in Poland. The species selected reflect the species structure of commercial and recreational catches. They were roach, bream, silver bream, crucian carp (Cyprinidae, ruffe, perch, zander (Percidae and pike (Esocidae. The fish were filleted, and the skinned muscle was compressed under a trichinoscope, what allowed to see and count metacercariae in the tissues. To facilitate parasite isolation from the cysts, the muscle tissues were subjected to a 0.1 % solution of activated pepsin and 5 % citric acid at a temperature of 20ºC. The free larvae were measured and identified under an Olympus BX 50 microscope coupled with a camera running AxioVs40 V 4.8.2.0 software. Metacercariae are grouped primarily at depths ranging from just beneath the skin to about 50% of fillet thickness. The infection prevalence of P. ovatus metacercariae in the fish analyzed was 78,5%. The density of infection per gram of muscle tissue mass in the fish infected was 8.85 (from 1 to 84 metacercariae. The highest density was noted in roach, bream and white bream (17.09, 11.14 and 9.58, respectively. Metacercariae occurred singly in pike, parasites were not found in the muscles of crucian carp, ruffe, and perch examined. The reason for such differences in infection is the availability and composition of food, as well as the behavior of the fish examined.

Strengths-based Learning

DEFF Research Database (Denmark)

Ledertoug, Mette Marie

-being. The Ph.D.-project in Strength-based learning took place in a Danish school with 750 pupils age 6-16 and a similar school was functioning as a control group. The presentation will focus on both the aware-explore-apply processes and the practical implications for the schools involved, and on measurable......Strength-based learning - Children͛s Character Strengths as Means to their Learning Potential͛ is a Ph.D.-project aiming to create a strength-based mindset in school settings and at the same time introducing strength-based interventions as specific tools to improve both learning and well...

Using Web-Based Peer Benchmarking to Manage the Client-Based Project

Science.gov (United States)

Raska, David; Keller, Eileen Weisenbach; Shaw, Doris

2013-01-01

The complexities of integrating client-based projects into marketing courses provide challenges for the instructor but produce richness of context and active learning for the student. This paper explains the integration of Web-based peer benchmarking as a means of improving student performance on client-based projects within a single semester in…

Novel nonlinear knowledge-based mean force potentials based on machine learning.

Science.gov (United States)

Dong, Qiwen; Zhou, Shuigeng

2011-01-01

The prediction of 3D structures of proteins from amino acid sequences is one of the most challenging problems in molecular biology. An essential task for solving this problem with coarse-grained models is to deduce effective interaction potentials. The development and evaluation of new energy functions is critical to accurately modeling the properties of biological macromolecules. Knowledge-based mean force potentials are derived from statistical analysis of proteins of known structures. Current knowledge-based potentials are almost in the form of weighted linear sum of interaction pairs. In this study, a class of novel nonlinear knowledge-based mean force potentials is presented. The potential parameters are obtained by nonlinear classifiers, instead of relative frequencies of interaction pairs against a reference state or linear classifiers. The support vector machine is used to derive the potential parameters on data sets that contain both native structures and decoy structures. Five knowledge-based mean force Boltzmann-based or linear potentials are introduced and their corresponding nonlinear potentials are implemented. They are the DIH potential (single-body residue-level Boltzmann-based potential), the DFIRE-SCM potential (two-body residue-level Boltzmann-based potential), the FS potential (two-body atom-level Boltzmann-based potential), the HR potential (two-body residue-level linear potential), and the T32S3 potential (two-body atom-level linear potential). Experiments are performed on well-established decoy sets, including the LKF data set, the CASP7 data set, and the Decoys “R”Us data set. The evaluation metrics include the energy Z score and the ability of each potential to discriminate native structures from a set of decoy structures. Experimental results show that all nonlinear potentials significantly outperform the corresponding Boltzmann-based or linear potentials, and the proposed discriminative framework is effective in developing knowledge-based

Using bio-based polymers for curing cement-based materials

NARCIS (Netherlands)

Zlopasa, J.; Koenders, E.A.B.; Picken, S.J.

2014-01-01

Curing is the process of controlling the rate and extent of moisture loss from the surface of cement based materials. It is the final stage in the production of cement-based materials and it is the essential part for achieving continuous hydration of cement, while avoiding cracking due to drying

Carbon-based sputtered coatings for enhanced chitosan-based films properties

Science.gov (United States)

Fernandes, C.; Calderon V., S.; Ballesteros, Lina F.; Cerqueira, Miguel A.; Pastrana, L. M.; Teixeira, José A.; Ferreira, P. J.; Carvalho, S.

2018-03-01

In order to make bio-based packaging materials competitive in comparison to petroleum-based one, some of their properties need to be improved, among which gas permeability is of crucial importance. Thus, in this work, carbon-based coatings were applied on chitosan-based films by radiofrequency reactive magnetron sputtering aiming to improve their barrier properties. Chemical and morphological properties were evaluated in order to determine the effect of the coatings on the chemical structure, surface hydrophobicity and barrier properties of the system. Chemical analysis, performed by electron energy loss spectroscopy and Fourier transform infrared spectroscopy, suggests similar chemical characteristics among all coatings although higher incorporation of hydrogen as the acetylene flux increases was observed. On the other hand, scanning transmission electron microscopy revealed that the porosity of the carbon layer can be tailored by the acetylene flux. More importantly, the chitosan oxygen permeability showed a monotonic reduction as a function of the acetylene flux. This study opens up new opportunities to apply nanostructured coatings on bio-based polymer for enhanced oxygen barrier properties.

Computer-based teaching is as good as face to face lecture-based teaching of evidence based medicine: a randomised controlled trial

Science.gov (United States)

2007-01-01

Background At postgraduate level evidence based medicine (EBM) is currently taught through tutor based lectures. Computer based sessions fit around doctors' workloads, and standardise the quality of educational provision. There have been no randomized controlled trials comparing computer based sessions with traditional lectures at postgraduate level within medicine. Methods This was a randomised controlled trial involving six postgraduate education centres in the West Midlands, U.K. Fifty five newly qualified foundation year one doctors (U.S internship equivalent) were randomised to either computer based sessions or an equivalent lecture in EBM and systematic reviews. The change from pre to post-intervention score was measured using a validated questionnaire assessing knowledge (primary outcome) and attitudes (secondary outcome). Results Both groups were similar at baseline. Participants' improvement in knowledge in the computer based group was equivalent to the lecture based group (gain in score: 2.1 [S.D = 2.0] versus 1.9 [S.D = 2.4]; ANCOVA p = 0.078). Attitudinal gains were similar in both groups. Conclusion On the basis of our findings we feel computer based teaching and learning is as effective as typical lecture based teaching sessions for educating postgraduates in EBM and systematic reviews. PMID:17659076

A model-based framework for design of intensified enzyme-based processes

DEFF Research Database (Denmark)

Román-Martinez, Alicia

This thesis presents a generic and systematic model-based framework to design intensified enzyme-based processes. The development of the presented methodology was motivated by the needs of the bio-based industry for a more systematic approach to achieve intensification in its production plants...... in enzyme-based processes which have found significant application in the pharmaceutical, food, and renewable fuels sector. The framework uses model-based strategies for (bio)-chemical process design and optimization, including the use of a superstructure to generate all potential reaction......(s)-separation(s) options according to a desired performance criteria and a generic mathematical model represented by the superstructure to derive the specific models corresponding to a specific process option. In principle, three methods of intensification of bioprocess are considered in this thesis: 1. enzymatic one...

Stolen Base Physics

Science.gov (United States)

Kagan, David

2013-01-01

Few plays in baseball are as consistently close and exciting as the stolen base. While there are several studies of sprinting, the art of base stealing is much more nuanced. This article describes the motion of the base-stealing runner using a very basic kinematic model. The model will be compared to some data from a Major League game. The…

An Evidence-Based Assessment of Faith-Based Programs: Do Faith-Based Programs "Work" to Reduce Recidivism?

Science.gov (United States)

Dodson, Kimberly D.; Cabage, Leann N.; Klenowski, Paul M.

2011-01-01

Faith-based organizations administer many of the prison-based programs aimed at reducing recidivism. Many of these organizations also manage treatment programs for substance abusers, at-risk juveniles, and ex-offenders. Much of the research on religiosity and delinquency indicates that the two are inversely related. Therefore, it seems plausible…

Case-based reasoning diagnostic technique based on multi-attribute similarity

Energy Technology Data Exchange (ETDEWEB)

Makoto, Takahashi [Tohoku University, Miyagi (Japan); Akio, Gofuku [Okayama University, Okayamaa (Japan)

2014-08-15

Case-based diagnostic technique has been developed based on the multi-attribute similarity. Specific feature of the developed system is to use multiple attributes of process signals for similarity evaluation to retrieve a similar case stored in a case base. The present technique has been applied to the measurement data from Monju with some simulated anomalies. The results of numerical experiments showed that the present technique can be utilizes as one of the methods for a hybrid-type diagnosis system.

Risk-based safety indicators

International Nuclear Information System (INIS)

Szikszai, T.

1997-01-01

The presentation discusses the following issues: The objectives of the risk-based indicator programme. The characteristics of the risk-based indicators. The objectives of risk-based safety indicators - in monitoring safety; in PSA applications. What indicators? How to produce the risk based indicators? PSA requirements

Supporting Case-Based Learning in Information Security with Web-Based Technology

Science.gov (United States)

He, Wu; Yuan, Xiaohong; Yang, Li

2013-01-01

Case-based learning has been widely used in many disciplines. As an effective pedagogical method, case-based learning is also being used to support teaching and learning in the domain of information security. In this paper, we demonstrate case-based learning in information security by sharing our experiences in using a case study to teach security…

A web-based data-querying tool based on ontology-driven methodology and flowchart-based model.

Science.gov (United States)

Ping, Xiao-Ou; Chung, Yufang; Tseng, Yi-Ju; Liang, Ja-Der; Yang, Pei-Ming; Huang, Guan-Tarn; Lai, Feipei

2013-10-08

Because of the increased adoption rate of electronic medical record (EMR) systems, more health care records have been increasingly accumulating in clinical data repositories. Therefore, querying the data stored in these repositories is crucial for retrieving the knowledge from such large volumes of clinical data. The aim of this study is to develop a Web-based approach for enriching the capabilities of the data-querying system along the three following considerations: (1) the interface design used for query formulation, (2) the representation of query results, and (3) the models used for formulating query criteria. The Guideline Interchange Format version 3.5 (GLIF3.5), an ontology-driven clinical guideline representation language, was used for formulating the query tasks based on the GLIF3.5 flowchart in the Protégé environment. The flowchart-based data-querying model (FBDQM) query execution engine was developed and implemented for executing queries and presenting the results through a visual and graphical interface. To examine a broad variety of patient data, the clinical data generator was implemented to automatically generate the clinical data in the repository, and the generated data, thereby, were employed to evaluate the system. The accuracy and time performance of the system for three medical query tasks relevant to liver cancer were evaluated based on the clinical data generator in the experiments with varying numbers of patients. In this study, a prototype system was developed to test the feasibility of applying a methodology for building a query execution engine using FBDQMs by formulating query tasks using the existing GLIF. The FBDQM-based query execution engine was used to successfully retrieve the clinical data based on the query tasks formatted using the GLIF3.5 in the experiments with varying numbers of patients. The accuracy of the three queries (ie, "degree of liver damage," "degree of liver damage when applying a mutually exclusive setting

Feature-Based Analysis of Plasma-Based Particle Acceleration Data

Energy Technology Data Exchange (ETDEWEB)

Rubel, Oliver [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Geddes, Cameron G. R. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Chen, Min [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Cormier-Michel, Estelle [Tech-X Corp., Boulder, CO (United States); Bethel, E. Wes [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

2014-02-01

Plasma-based particle accelerators can produce and sustain thousands of times stronger acceleration fields than conventional particle accelerators, providing a potential solution to the problem of the growing size and cost of conventional particle accelerators. To facilitate scientific knowledge discovery from the ever growing collections of accelerator simulation data generated by accelerator physicists to investigate next-generation plasma-based particle accelerator designs, we describe a novel approach for automatic detection and classification of particle beams and beam substructures due to temporal differences in the acceleration process, here called acceleration features. The automatic feature detection in combination with a novel visualization tool for fast, intuitive, query-based exploration of acceleration features enables an effective top-down data exploration process, starting from a high-level, feature-based view down to the level of individual particles. We describe the application of our analysis in practice to analyze simulations of single pulse and dual and triple colliding pulse accelerator designs, and to study the formation and evolution of particle beams, to compare substructures of a beam and to investigate transverse particle loss.

Convex-based void filling method for CAD-based Monte Carlo geometry modeling

International Nuclear Information System (INIS)

Yu, Shengpeng; Cheng, Mengyun; Song, Jing; Long, Pengcheng; Hu, Liqin

2015-01-01

Highlights: • We present a new void filling method named CVF for CAD based MC geometry modeling. • We describe convex based void description based and quality-based space subdivision. • The results showed improvements provided by CVF for both modeling and MC calculation efficiency. - Abstract: CAD based automatic geometry modeling tools have been widely applied to generate Monte Carlo (MC) calculation geometry for complex systems according to CAD models. Automatic void filling is one of the main functions in the CAD based MC geometry modeling tools, because the void space between parts in CAD models is traditionally not modeled while MC codes such as MCNP need all the problem space to be described. A dedicated void filling method, named Convex-based Void Filling (CVF), is proposed in this study for efficient void filling and concise void descriptions. The method subdivides all the problem space into disjointed regions using Quality based Subdivision (QS) and describes the void space in each region with complementary descriptions of the convex volumes intersecting with that region. It has been implemented in SuperMC/MCAM, the Multiple-Physics Coupling Analysis Modeling Program, and tested on International Thermonuclear Experimental Reactor (ITER) Alite model. The results showed that the new method reduced both automatic modeling time and MC calculation time

Knowledge base mechanisms

Energy Technology Data Exchange (ETDEWEB)

Suwa, M; Furukawa, K; Makinouchi, A; Mizoguchi, T; Mizoguchi, F; Yamasaki, H

1982-01-01

One of the principal goals of the Fifth Generation Computer System Project for the coming decade is to develop a methodology for building knowledge information processing systems which will provide people with intelligent agents. The key notion of the fifth generation computer system is knowledge used for problem solving. In this paper the authors describe the plan of Randd on knowledge base mechanisms. A knowledge representation system is to be designed to support knowledge acquisition for the knowledge information processing systems. The system will include a knowledge representation language, a knowledge base editor and a debugger. It is also expected to perform as a kind of meta-inference system. In order to develop the large scale knowledge base systems, a knowledge base mechanism based on the relational model is to be studied in the earlier stage of the project. Distributed problem solving is also one of the main issues of the project. 19 references.

Iron-based amorphous alloys and methods of synthesizing iron-based amorphous alloys

Science.gov (United States)

Saw, Cheng Kiong; Bauer, William A.; Choi, Jor-Shan; Day, Dan; Farmer, Joseph C.

2016-05-03

A method according to one embodiment includes combining an amorphous iron-based alloy and at least one metal selected from a group consisting of molybdenum, chromium, tungsten, boron, gadolinium, nickel phosphorous, yttrium, and alloys thereof to form a mixture, wherein the at least one metal is present in the mixture from about 5 atomic percent (at %) to about 55 at %; and ball milling the mixture at least until an amorphous alloy of the iron-based alloy and the at least one metal is formed. Several amorphous iron-based metal alloys are also presented, including corrosion-resistant amorphous iron-based metal alloys and radiation-shielding amorphous iron-based metal alloys.

Comparing grapheme-based and phoneme-based speech recognition for Afrikaans

CSIR Research Space (South Africa)

Basson, WD

2012-11-01

Full Text Available This paper compares the recognition accuracy of a phoneme-based automatic speech recognition system with that of a grapheme-based system, using Afrikaans as case study. The first system is developed using a conventional pronunciation dictionary...

Culture and group-based emotions: could group-based emotions be dialectical?

Science.gov (United States)

Lu, Minjie; Hamamura, Takeshi; Doosje, Bertjan; Suzuki, Satoko; Takemura, Kosuke

2017-08-01

Group-based emotions are experienced when individuals are engaged in emotion-provoking events that implicate the in-group. This research examines the complexity of group-based emotions, specifically a concurrence of positive and negative emotions, focusing on the role of dialecticism, or a set of folk beliefs prevalent in Asian cultures that views nature and objects as constantly changing, inherently contradictory, and fundamentally interconnected. Study 1 found that dialecticism is positively associated with the complexity of Chinese participants' group-based emotions after reading a scenario depicting a positive intergroup experience. Study 2 found that Chinese participants experienced more complex group-based emotions compared with Dutch participants in an intergroup situation and that this cultural difference was mediated by dialecticism. Study 3 manipulated dialecticism and confirmed its causal effect on complex group-based emotions. These studies also suggested the role of a balanced appraisal of an intergroup situation as a mediating factor.

Interdisciplinarity in translation teaching: competence-based education, translation task-based approach, context-based text typology

Directory of Open Access Journals (Sweden)

Edelweiss Vitol Gysel

2017-05-01

Full Text Available In the context of competence-based teaching, this paper draws upon the model of Translation Competence (TC put forward by the PACTE group (2003 to establish a dialogue between cognitive-constructivist paradigms for translation teaching and the model of the Context-based Text Typology (MATTHIESSEN et al., 2007. In this theoretical environment, it proposes a model for the design of a Teaching Unit (TU for the development of the bilingual competence in would-be-translators.To this end, it explores translation as a cognitive, communicative and textual activity (HURTADO ALBIR, 2011 and considers its teaching from the translation task-based approach (HURTADO ALBIR, 1999. This approach is illustrated through the practical example of the design of a TU elaborated for the subject ‘Introduction to Specialized Translation’,part of the curricular grid of the program ‘Secretariado Executivo’ at Universidade Federal de Santa Catarina. Aspects such as the establishment of learning objectives and their alignment with the translation tasks composing the TU are addressed for this specific pedagogical situation. We argue for the development of textual competences by means of the acquisition of strategies derived from the Context-based Text Typology to solve problems arising from the translation of different text types and contextual configurations.

Evidence-Based Toxicology.

Science.gov (United States)

Hoffmann, Sebastian; Hartung, Thomas; Stephens, Martin

Evidence-based toxicology (EBT) was introduced independently by two groups in 2005, in the context of toxicological risk assessment and causation as well as based on parallels between the evaluation of test methods in toxicology and evidence-based assessment of diagnostics tests in medicine. The role model of evidence-based medicine (EBM) motivated both proposals and guided the evolution of EBT, whereas especially systematic reviews and evidence quality assessment attract considerable attention in toxicology.Regarding test assessment, in the search of solutions for various problems related to validation, such as the imperfectness of the reference standard or the challenge to comprehensively evaluate tests, the field of Diagnostic Test Assessment (DTA) was identified as a potential resource. DTA being an EBM discipline, test method assessment/validation therefore became one of the main drivers spurring the development of EBT.In the context of pathway-based toxicology, EBT approaches, given their objectivity, transparency and consistency, have been proposed to be used for carrying out a (retrospective) mechanistic validation.In summary, implementation of more evidence-based approaches may provide the tools necessary to adapt the assessment/validation of toxicological test methods and testing strategies to face the challenges of toxicology in the twenty first century.

Aperiodic-metamaterial-based absorber

Directory of Open Access Journals (Sweden)

Quanlong Yang

2017-09-01

Full Text Available The periodic-metamaterial-based perfect absorber has been studied broadly. Conversely, if the unit cell in the metamaterial-based absorber is arranged aperiodically (aperiodic-metamaterial-based absorber, how does it perform? Inspired by this, here we present a systematic study of the aperiodic-metamaterial-based absorber. By investigating the response of metamaterial absorbers based on periodic, Fibonacci, Thue-Morse, and quasicrystal lattices, we found that aperiodic-metamaterial-based absorbers could display similar absorption behaviors as the periodic one in one hand. However, their absorption behaviors show different tendency depending on the thicknesses of the spacer. Further studies on the angle and polarization dependence of the absorption behavior are also presented.

Concurrent array-based queue

Science.gov (United States)

Heidelberger, Philip; Steinmacher-Burow, Burkhard

2015-01-06

According to one embodiment, a method for implementing an array-based queue in memory of a memory system that includes a controller includes configuring, in the memory, metadata of the array-based queue. The configuring comprises defining, in metadata, an array start location in the memory for the array-based queue, defining, in the metadata, an array size for the array-based queue, defining, in the metadata, a queue top for the array-based queue and defining, in the metadata, a queue bottom for the array-based queue. The method also includes the controller serving a request for an operation on the queue, the request providing the location in the memory of the metadata of the queue.

Metal-mediated DNA base pairing: alternatives to hydrogen-bonded Watson-Crick base pairs.

Science.gov (United States)

Takezawa, Yusuke; Shionoya, Mitsuhiko

2012-12-18

With its capacity to store and transfer the genetic information within a sequence of monomers, DNA forms its central role in chemical evolution through replication and amplification. This elegant behavior is largely based on highly specific molecular recognition between nucleobases through the specific hydrogen bonds in the Watson-Crick base pairing system. While the native base pairs have been amazingly sophisticated through the long history of evolution, synthetic chemists have devoted considerable efforts to create alternative base pairing systems in recent decades. Most of these new systems were designed based on the shape complementarity of the pairs or the rearrangement of hydrogen-bonding patterns. We wondered whether metal coordination could serve as an alternative driving force for DNA base pairing and why hydrogen bonding was selected on Earth in the course of molecular evolution. Therefore, we envisioned an alternative design strategy: we replaced hydrogen bonding with another important scheme in biological systems, metal-coordination bonding. In this Account, we provide an overview of the chemistry of metal-mediated base pairing including basic concepts, molecular design, characteristic structures and properties, and possible applications of DNA-based molecular systems. We describe several examples of artificial metal-mediated base pairs, such as Cu(2+)-mediated hydroxypyridone base pair, H-Cu(2+)-H (where H denotes a hydroxypyridone-bearing nucleoside), developed by us and other researchers. To design the metallo-base pairs we carefully chose appropriate combinations of ligand-bearing nucleosides and metal ions. As expected from their stronger bonding through metal coordination, DNA duplexes possessing metallo-base pairs exhibited higher thermal stability than natural hydrogen-bonded DNAs. Furthermore, we could also use metal-mediated base pairs to construct or induce other high-order structures. These features could lead to metal-responsive functional

Selective Sequential Zero-Base Budgeting Procedures Based on Total Factor Productivity Indicators

OpenAIRE

A. Ishikawa; E. F. Sudit

1981-01-01

The authors' purpose in this paper is to develop productivity-based sequential budgeting procedures designed to expedite identification of major problem areas in bugetary performance, as well as to reduce the costs associated with comprehensive zero-base analyses. The concept of total factor productivity is reviewed and its relations to ordinary and zero-based budgeting are discussed in detail. An outline for a selective sequential analysis based on monitoring of three key indicators of (a) i...

Replacing fossil based plastic performance products by bio-based plastic products-Technical feasibility.

Science.gov (United States)

van den Oever, Martien; Molenveld, Karin

2017-07-25

Larger scale market introduction of new bio-based products requires a clear advantage regarding sustainability, as well as an adequate techno-economic positioning relative to fossil based products. In a previous paper [Broeren et al., 2016], LCA results per kg and per functionality equivalent of bio-based plastics were presented, together with economic considerations. The present paper discusses the mechanical and thermal properties of a range of commercially available bio-based plastics based on polylactic acid (PLA), cellulose esters, starch and polyamides, and the feasibility of replacing fossil-based counterparts based on performance. The evaluation is approached from an end user perspective. First, potentially suitable bio-based plastics are selected based on manufacturers' specifications in technical data sheets, then a first experimental evaluation is performed on injection moulded ISO specimens, and finally a further selection of plastics is tested on large 50×70cm panels. This technical feasibility study indicates that so far bio-based plastics do not completely match the properties of high performance materials like flame retardant V-0 PC/ABS blends used in electronic devices. The performance gap is being decreased by the development of stereocomplex PLA and hybrid PLA blends with polycarbonate, which offer clearly improved properties with respect to maximum usage temperature and toughness. In addition, several materials meet the V-0 flammability requirements needed in specific durable applications. On the other hand, improving these properties so far has negative consequences for the bio-based content. This study also shows that replacement of bulk polymers like PS is feasible using PLA compounds with a bio-based content as high as 85%. Copyright © 2016 Elsevier B.V. All rights reserved.

From scientifically based research to evidence based learning

Directory of Open Access Journals (Sweden)

Rosa Cera

2016-02-01

Full Text Available This essay is a reflection on the peculiarities of the scientifically based research and on the distinctive elements of the EBL (evidence based learning, methodology used in the study on the “Relationship between Metacognition, Self-efficacy and Self-regulation in Learning”. The EBL method, based on the standardization of data, explains how the students’ learning experience can be considered as a set of “data” and can be used to explain how and when the research results can be considered generalizable and transferable to other learning situations. The reflections present in this study have also allowed us to illustrate the impact that its results have had on the micro and macro level of reality. They helped to fill in the gaps concerning the learning/teaching processes, contributed to the enrichment of the scientific literature on this subject and allowed to establish standards through rigorous techniques such as systematic reviews and meta-analysis.

Space Launch System Base Heating Test: Environments and Base Flow Physics

Science.gov (United States)

Mehta, Manish; Knox, Kyle S.; Seaford, C. Mark; Dufrene, Aaron T.

2016-01-01

The NASA Space Launch System (SLS) vehicle is composed of four RS-25 liquid oxygen- hydrogen rocket engines in the core-stage and two 5-segment solid rocket boosters and as a result six hot supersonic plumes interact within the aft section of the vehicle during ight. Due to the complex nature of rocket plume-induced ows within the launch vehicle base during ascent and a new vehicle con guration, sub-scale wind tunnel testing is required to reduce SLS base convective environment uncertainty and design risk levels. This hot- re test program was conducted at the CUBRC Large Energy National Shock (LENS) II short-duration test facility to simulate ight from altitudes of 50 kft to 210 kft. The test program is a challenging and innovative e ort that has not been attempted in 40+ years for a NASA vehicle. This presentation discusses the various trends of base convective heat ux and pressure as a function of altitude at various locations within the core-stage and booster base regions of the two-percent SLS wind tunnel model. In-depth understanding of the base ow physics is presented using the test data, infrared high-speed imaging and theory. The normalized test design environments are compared to various NASA semi- empirical numerical models to determine exceedance and conservatism of the ight scaled test-derived base design environments. Brief discussion of thermal impact to the launch vehicle base components is also presented.

The physics data base

International Nuclear Information System (INIS)

Gault, F.D.

1984-01-01

The physics data base is introduced along with its associated data base management system. The emphasis is on data and their use and a classification of data and of data bases is developed to distinguish compilation organizations. The characteristics of these organizations are examined briefly and the long term consequences of the physics data base discussed. (orig.)

Characteristic properties of Fibonacci-based mutually unbiased bases

Energy Technology Data Exchange (ETDEWEB)

Seyfarth, Ulrich; Alber, Gernot [Institut fuer Angewandte Physik, Technische Universitaet Darmstadt, 64289 Darmstadt (Germany); Ranade, Kedar [Institut fuer Quantenphysik, Universitaet Ulm, Albert-Einstein-Allee 11, 89069 Ulm (Germany)

2012-07-01

Complete sets of mutually unbiased bases (MUBs) offer interesting applications in quantum information processing ranging from quantum cryptography to quantum state tomography. Different construction schemes provide different perspectives on these bases which are typically also deeply connected to various mathematical research areas. In this talk we discuss characteristic properties resulting from a recently established connection between construction methods for cyclic MUBs and Fibonacci polynomials. As a remarkable fact this connection leads to construction methods which do not involve any relations to mathematical properties of finite fields.

Querying archetype-based EHRs by search ontology-based XPath engineering.

Science.gov (United States)

Kropf, Stefan; Uciteli, Alexandr; Schierle, Katrin; Krücken, Peter; Denecke, Kerstin; Herre, Heinrich

2018-05-11

Legacy data and new structured data can be stored in a standardized format as XML-based EHRs on XML databases. Querying documents on these databases is crucial for answering research questions. Instead of using free text searches, that lead to false positive results, the precision can be increased by constraining the search to certain parts of documents. A search ontology-based specification of queries on XML documents defines search concepts and relates them to parts in the XML document structure. Such query specification method is practically introduced and evaluated by applying concrete research questions formulated in natural language on a data collection for information retrieval purposes. The search is performed by search ontology-based XPath engineering that reuses ontologies and XML-related W3C standards. The key result is that the specification of research questions can be supported by the usage of search ontology-based XPath engineering. A deeper recognition of entities and a semantic understanding of the content is necessary for a further improvement of precision and recall. Key limitation is that the application of the introduced process requires skills in ontology and software development. In future, the time consuming ontology development could be overcome by implementing a new clinical role: the clinical ontologist. The introduced Search Ontology XML extension connects Search Terms to certain parts in XML documents and enables an ontology-based definition of queries. Search ontology-based XPath engineering can support research question answering by the specification of complex XPath expressions without deep syntax knowledge about XPaths.

Problem Based Learning

DEFF Research Database (Denmark)

de Graaff, Erik; Guerra, Aida

, the key principles remain the same everywhere. Graaff & Kolmos (2003) identify the main PBL principles as follows: 1. Problem orientation 2. Project organization through teams or group work 3. Participant-directed 4. Experiental learning 5. Activity-based learning 6. Interdisciplinary learning and 7...... model and in general problem based and project based learning. We apply the principle of teach as you preach. The poster aims to outline the visitors’ workshop programme showing the results of some recent evaluations.......Problem-Based Learning (PBL) is an innovative method to organize the learning process in such a way that the students actively engage in finding answers by themselves. During the past 40 years PBL has evolved and diversified resulting in a multitude in variations in models and practices. However...

High stability vector-based direct power control for DFIG-based wind turbine

DEFF Research Database (Denmark)

Zhu, Rongwu; Chen, Zhe; Wu, Xiaojie

2015-01-01

This paper proposes an improved vector-based direct power control (DPC) strategy for the doubly-fed induction generator (DFIG)-based wind energy conversion system. Based on the small signal model, the proposed DPC improves the stability of the DFIG, and avoids the DFIG operating in the marginal...

Research on Fault Diagnosis Method Based on Rule Base Neural Network

Directory of Open Access Journals (Sweden)

Zheng Ni

2017-01-01

Full Text Available The relationship between fault phenomenon and fault cause is always nonlinear, which influences the accuracy of fault location. And neural network is effective in dealing with nonlinear problem. In order to improve the efficiency of uncertain fault diagnosis based on neural network, a neural network fault diagnosis method based on rule base is put forward. At first, the structure of BP neural network is built and the learning rule is given. Then, the rule base is built by fuzzy theory. An improved fuzzy neural construction model is designed, in which the calculated methods of node function and membership function are also given. Simulation results confirm the effectiveness of this method.

A comparative review of petroleum-based and bio-based acrolein production.

Science.gov (United States)

Liu, Lu; Ye, X Philip; Bozell, Joseph J

2012-07-01

Acrolein is an important chemical intermediate for many common industrial chemicals, leading to an array of useful end products. This paper reviews all the synthetic methods, including the former (aldol condensation) and contemporary (partial oxidation of propylene) manufacturing methods, the partial oxidation of propane, and most importantly, the bio-based glycerol-dehydration route. Emphasis is placed on the petroleum-based route from propylene and the bio-based route from glycerol, an abundantly available and relatively inexpensive raw material available from biodiesel production. This review provides technical details and incentives for industrial proyduction that justify a transition toward bio-based acrolein production. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Value-based pricing

OpenAIRE

Netseva-Porcheva Tatyana

2010-01-01

The main aim of the paper is to present the value-based pricing. Therefore, the comparison between two approaches of pricing is made - cost-based pricing and value-based pricing. The 'Price sensitively meter' is presented. The other topic of the paper is the perceived value - meaning of the perceived value, the components of perceived value, the determination of perceived value and the increasing of perceived value. In addition, the best company strategies in matrix 'value-cost' are outlined. .

Research-based design & design-based research: Affordances, limitations and synergies

NARCIS (Netherlands)

McKenney, Susan

2015-01-01

Research-based design is an orientation to educational development that is explicitly informed by existing research as well as formative evaluation. Design-based research is a genre of inquiry in which the design of innovative solutions to problems in educational practice provides the context for

Autopsy practice in forensic pathology - Evidence-based or experience-based?

DEFF Research Database (Denmark)

Colville-Ebeling, Bonnie; Freeman, Michael; Banner, Jytte

2014-01-01

Current autopsy practice in forensic pathology is to a large extent based on experience and individual customary practices as opposed to evidence and consensus based practices. As a result there is the potential for substantial variation in how knowledge is applied in each case. In the present case......-gathering and the use of check lists specific to certain injury causes are likely to result in less deviation from evidence-based practices in forensic pathology. Pre-autopsy data-gathering and check lists will help ensure a higher degree of standardization in autopsy reports thus enhancing the quality and accuracy...

Value-based management: Theoretical base, shareholders' request and the concept

Directory of Open Access Journals (Sweden)

Kaličanin Đorđe M.

2005-01-01

Full Text Available The pressure of financial markets, which is a consequence of shareholder revolution, directly affects the solution to the following dilemma: is the mission of corporations to maximize shareholders' wealth or to satisfy interests of other stakeholders? The domination of shareholder theory has caused the appearance of the valuebased management concept. Value-based management is a relevant concept and a process of management in modern environment. The importance of shareholder value requires transformation of traditional enterprise into value driven enterprise. This paper addresses theoretical base, shareholder revolution and the main characteristics of value-based management.

Elucidating the hard/soft acid/base principle: A perspective based on half-reactions

International Nuclear Information System (INIS)

Ayers, Paul W.; Parr, Robert G.; Pearson, Ralph G.

2006-01-01

A comprehensive analysis is presented for the acid-base double-exchange reaction as well as the associated acid-displacement and base-displacement 'half-reactions' with the goal of elucidating the meaning of the hard/soft acid/base (HSAB) principle and the conditions for its validity. When electron-transfer effects are important and other effects are negligible, the HSAB principle is driven by the surpassing stability of the soft acid/soft base product. When electrostatic effects dominate the reactivity, the HSAB principle is driven by the surpassing stability of the hard acid/hard base product. Because electron-transfer effects favor soft/soft interactions, while electrostatic effects favor hard/hard interactions, acid-base exchange reactions may be used to determine whether a reagent's reactivity is dominated by electron-transfer or by electrostatic effects. Because electron-transfer and electrostatic considerations separately favor the HSAB principle whenever the electronic chemical potentials of the acids and bases involved in the reaction are similar, our analysis provides strong support for the HSAB principle. The electronic chemical potential measures the intrinsic strength of acids and bases

Base-By-Base: single nucleotide-level analysis of whole viral genome alignments.

Science.gov (United States)

Brodie, Ryan; Smith, Alex J; Roper, Rachel L; Tcherepanov, Vasily; Upton, Chris

2004-07-14

With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than gene content because two strains of an organism may share the same set of predicted genes but still differ in their pathogenicity profiles. For example, detailed comparison of multiple isolates of the smallpox virus genome (each approximately 200 kb, with 200 genes) is not feasible without new bioinformatics tools. A software package, Base-By-Base, has been developed that provides visualization tools to enable researchers to 1) rapidly identify and correct alignment errors in large, multiple genome alignments; and 2) generate tabular and graphical output of differences between the genomes at the nucleotide level. Base-By-Base uses detailed annotation information about the aligned genomes and can list each predicted gene with nucleotide differences, display whether variations occur within promoter regions or coding regions and whether these changes result in amino acid substitutions. Base-By-Base can connect to our mySQL database (Virus Orthologous Clusters; VOCs) to retrieve detailed annotation information about the aligned genomes or use information from text files. Base-By-Base enables users to quickly and easily compare large viral genomes; it highlights small differences that may be responsible for important phenotypic differences such as virulence. It is available via the Internet using Java Web Start and runs on Macintosh, PC and Linux operating systems with the Java 1.4 virtual machine.

Value-based pricing

Directory of Open Access Journals (Sweden)

Netseva-Porcheva Tatyana

2010-01-01

Full Text Available The main aim of the paper is to present the value-based pricing. Therefore, the comparison between two approaches of pricing is made - cost-based pricing and value-based pricing. The 'Price sensitively meter' is presented. The other topic of the paper is the perceived value - meaning of the perceived value, the components of perceived value, the determination of perceived value and the increasing of perceived value. In addition, the best company strategies in matrix 'value-cost' are outlined. .

An Analysis of Delay-based and Integrator-based Sequence Detectors for Grid-Connected Converters

DEFF Research Database (Denmark)

Khazraj, Hesam; Silva, Filipe Miguel Faria da; Bak, Claus Leth

2017-01-01

-signal cancellation operators are the main members of the delay-based sequence detectors. The aim of this paper is to provide a theoretical and experimental comparative study between integrator and delay based sequence detectors. The theoretical analysis is conducted based on the small-signal modelling......Detecting and separating positive and negative sequence components of the grid voltage or current is of vital importance in the control of grid-connected power converters, HVDC systems, etc. To this end, several techniques have been proposed in recent years. These techniques can be broadly...... classified into two main classes: The integrator-based techniques and Delay-based techniques. The complex-coefficient filter-based technique, dual second-order generalized integrator-based method, multiple reference frame approach are the main members of the integrator-based sequence detector and the delay...

Gender-based violence and the need for evidence-based primary ...

African Journals Online (AJOL)

Gender-based violence is a significant problem globally and in South Africa. The public and political discourse has been dominated by calls for increased penalties and convictions for perpetrators of various types of gender-based violence. However, these responses are unlikely to prevent such violence from occurring in ...

Skull base tumours part I: Imaging technique, anatomy and anterior skull base tumours

Energy Technology Data Exchange (ETDEWEB)

Borges, Alexandra [Instituto Portugues de Oncologia Francisco Gentil, Centro de Lisboa, Servico de Radiologia, Rua Professor Lima Basto, 1093 Lisboa Codex (Portugal)], E-mail: borgesalexandra@clix.pt

2008-06-15

Advances in cross-sectional imaging, surgical technique and adjuvant treatment have largely contributed to ameliorate the prognosis, lessen the morbidity and mortality of patients with skull base tumours and to the growing medical investment in the management of these patients. Because clinical assessment of the skull base is limited, cross-sectional imaging became indispensable in the diagnosis, treatment planning and follow-up of patients with suspected skull base pathology and the radiologist is increasingly responsible for the fate of these patients. This review will focus on the advances in imaging technique; contribution to patient's management and on the imaging features of the most common tumours affecting the anterior skull base. Emphasis is given to a systematic approach to skull base pathology based upon an anatomic division taking into account the major tissue constituents in each skull base compartment. The most relevant information that should be conveyed to surgeons and radiation oncologists involved in patient's management will be discussed.

Applications of lipid based formulation technologies in the delivery of biotechnology-based therapeutics.

Science.gov (United States)

du Plessis, Lissinda H; Marais, Etienne B; Mohammed, Faruq; Kotzé, Awie F

2014-01-01

In the last decades several new biotechnologically-based therapeutics have been developed due to progress in genetic engineering. A growing challenge facing pharmaceutical scientists is formulating these compounds into oral dosage forms with adequate bioavailability. An increasingly popular approach to formulate biotechnology-based therapeutics is the use of lipid based formulation technologies. This review highlights the importance of lipid based drug delivery systems in the formulation of oral biotechnology based therapeutics including peptides, proteins, DNA, siRNA and vaccines. The different production procedures used to achieve high encapsulation efficiencies of the bioactives are discussed, as well as the factors influencing the choice of excipient. Lipid based colloidal drug delivery systems including liposomes and solid lipid nanoparticles are reviewed with a focus on recent advances and updates. We further describe microemulsions and self-emulsifying drug delivery systems and recent findings on bioactive delivery. We conclude the review with a few examples on novel lipid based formulation technologies.

Skull base tumours part I: Imaging technique, anatomy and anterior skull base tumours

International Nuclear Information System (INIS)

Borges, Alexandra

2008-01-01

Advances in cross-sectional imaging, surgical technique and adjuvant treatment have largely contributed to ameliorate the prognosis, lessen the morbidity and mortality of patients with skull base tumours and to the growing medical investment in the management of these patients. Because clinical assessment of the skull base is limited, cross-sectional imaging became indispensable in the diagnosis, treatment planning and follow-up of patients with suspected skull base pathology and the radiologist is increasingly responsible for the fate of these patients. This review will focus on the advances in imaging technique; contribution to patient's management and on the imaging features of the most common tumours affecting the anterior skull base. Emphasis is given to a systematic approach to skull base pathology based upon an anatomic division taking into account the major tissue constituents in each skull base compartment. The most relevant information that should be conveyed to surgeons and radiation oncologists involved in patient's management will be discussed

Comparison of MRI-based and CT/MRI fusion-based postimplant dosimetric analysis of prostate brachytherapy

International Nuclear Information System (INIS)

Tanaka, Osamu; Hayashi, Shinya; Matsuo, Masayuki; Sakurai, Kota; Nakano, Masahiro; Maeda, Sunaho; Kajita, Kimihiro R.T.; Deguchi, Takashi; Hoshi, Hiroaki

2006-01-01

Purpose: The aim of this study was to compare the outcomes between magnetic resonance imaging (MRI)-based and computed tomography (CT)/MRI fusion-based postimplant dosimetry methods in permanent prostate brachytherapy. Methods and Materials: Between October 2004 and March 2006, a total of 52 consecutive patients with prostate cancer were treated by brachytherapy, and postimplant dosimetry was performed using CT/MRI fusion. The accuracy and reproducibility were prospectively compared between MRI-based dosimetry and CT/MRI fusion-based dosimetry based on the dose-volume histogram (DVH) related parameters as recommended by the American Brachytherapy Society. Results: The prostate volume was 15.97 ± 6.17 cc (mean ± SD) in MRI-based dosimetry, and 15.97 ± 6.02 cc in CT/MRI fusion-based dosimetry without statistical difference. The prostate V100 was 94.5% and 93.0% in MRI-based and CT/MRI fusion-based dosimetry, respectively, and the difference was statistically significant (p = 0.002). The prostate D90 was 119.4% and 114.4% in MRI-based and CT/MRI fusion-based dosimetry, respectively, and the difference was statistically significant (p = 0.004). Conclusion: Our current results suggested that, as with fusion images, MR images allowed accurate contouring of the organs, but they tended to overestimate the analysis of postimplant dosimetry in comparison to CT/MRI fusion images. Although this MRI-based dosimetric discrepancy was negligible, MRI-based dosimetry was acceptable and reproducible in comparison to CT-based dosimetry, because the difference between MRI-based and CT/MRI fusion-based results was smaller than that between CT-based and CT/MRI fusion-based results as previously reported

Problem-Oriented Corporate Knowledge Base Models on the Case-Based Reasoning Approach Basis

Science.gov (United States)

Gluhih, I. N.; Akhmadulin, R. K.

2017-07-01

One of the urgent directions of efficiency enhancement of production processes and enterprises activities management is creation and use of corporate knowledge bases. The article suggests a concept of problem-oriented corporate knowledge bases (PO CKB), in which knowledge is arranged around possible problem situations and represents a tool for making and implementing decisions in such situations. For knowledge representation in PO CKB a case-based reasoning approach is encouraged to use. Under this approach, the content of a case as a knowledge base component has been defined; based on the situation tree a PO CKB knowledge model has been developed, in which the knowledge about typical situations as well as specific examples of situations and solutions have been represented. A generalized problem-oriented corporate knowledge base structural chart and possible modes of its operation have been suggested. The obtained models allow creating and using corporate knowledge bases for support of decision making and implementing, training, staff skill upgrading and analysis of the decisions taken. The universal interpretation of terms “situation” and “solution” adopted in the work allows using the suggested models to develop problem-oriented corporate knowledge bases in different subject domains. It has been suggested to use the developed models for making corporate knowledge bases of the enterprises that operate engineer systems and networks at large production facilities.

Web-Based Learning Environment Based on Students’ Needs

Science.gov (United States)

Hamzah, N.; Ariffin, A.; Hamid, H.

2017-08-01

Traditional learning needs to be improved since it does not involve active learning among students. Therefore, in the twenty-first century, the development of internet technology in the learning environment has become the main needs of each student. One of the learning environments to meet the needs of the teaching and learning process is a web-based learning environment. This study aims to identify the characteristics of a web-based learning environment that supports students’ learning needs. The study involved 542 students from fifteen faculties in a public higher education institution in Malaysia. A quantitative method was used to collect the data via a questionnaire survey by randomly. The findings indicate that the characteristics of a web-based learning environment that support students’ needs in the process of learning are online discussion forum, lecture notes, assignments, portfolio, and chat. In conclusion, the students overwhelmingly agreed that online discussion forum is the highest requirement because the tool can provide a space for students and teachers to share knowledge and experiences related to teaching and learning.

Home Based Training: Main Strategy in Community Based Rehabilitation in Iran

Directory of Open Access Journals (Sweden)

Peiman Salamati

2006-10-01

Full Text Available Objective: Study of effectiveness of “home based training” in community based rehabilitation program on disabled people, under supervised of 21 pilot cities health and medical networks, who were trained and evaluated at the end of the course. Materials & Methods: In a cross-sectional study, 614 disabled people who had participated in “home based training” were selected with stratified random sampling method. They were evaluated according to function progress level variables by community based rehabilitation programme experts. Age, sex, disability groups, employment state and teacher’s relation variables were studied from their files and recording datas. Statistical analysis was performed with Chi-square test. Results: There was a relationship between age group and disability group with functional progress level (P = 0.014 & P <0.001. Low age groups, visional disabled group, epileptic patients and individuals with learning problems had the best results. High age groups, mixed disability group and individuals with verbal and hearing problems had the least results. There was a relationship between teacher’s relation with progress or nonprogress state (P = 0.038. Individuals that they were own teachers had the best results and individuals with teachers other than first or second relation or health worker had the least results. Conclusion: Home based training in community based rehabilitation programme is an effective method for improving disabled people in some selected groups.

How evidence-based are the recommendations in evidence-based guidelines?

Directory of Open Access Journals (Sweden)

Finlay A McAlister

2007-08-01

Full Text Available BACKGROUND: Treatment recommendations for the same condition from different guideline bodies often disagree, even when the same randomized controlled trial (RCT evidence is cited. Guideline appraisal tools focus on methodology and quality of reporting, but not on the nature of the supporting evidence. This study was done to evaluate the quality of the evidence (based on consideration of its internal validity, clinical relevance, and applicability underlying therapy recommendations in evidence-based clinical practice guidelines. METHODS AND FINDINGS: A cross-sectional analysis of cardiovascular risk management recommendations was performed for three different conditions (diabetes mellitus, dyslipidemia, and hypertension from three pan-national guideline panels (from the United States, Canada, and Europe. Of the 338 treatment recommendations in these nine guidelines, 231 (68% cited RCT evidence but only 105 (45% of these RCT-based recommendations were based on high-quality evidence. RCT-based evidence was downgraded most often because of reservations about the applicability of the RCT to the populations specified in the guideline recommendation (64/126 cases, 51% or because the RCT reported surrogate outcomes (59/126 cases, 47%. CONCLUSIONS: The results of internally valid RCTs may not be applicable to the populations, interventions, or outcomes specified in a guideline recommendation and therefore should not always be assumed to provide high-quality evidence for therapy recommendations.

Microfluidic paper-based biomolecule preconcentrator based on ion concentration polarization.

Science.gov (United States)

Han, Sung Il; Hwang, Kyo Seon; Kwak, Rhokyun; Lee, Jeong Hoon

2016-06-21

Microfluidic paper-based analytical devices (μPADs) for molecular detection have great potential in the field of point-of-care diagnostics. Currently, a critical problem being faced by μPADs is improving their detection sensitivity. Various preconcentration processes have been developed, but they still have complicated structures and fabrication processes to integrate into μPADs. To address this issue, we have developed a novel paper-based preconcentrator utilizing ion concentration polarization (ICP) with minimal addition on lateral-flow paper. The cation selective membrane (i.e., Nafion) is patterned on adhesive tape, and this tape is then attached to paper-based channels. When an electric field is applied across the Nafion, ICP is initiated to preconcentrate the biomolecules in the paper channel. Departing from previous paper-based preconcentrators, we maintain steady lateral fluid flow with the separated Nafion layer; as a result, fluorescent dyes and proteins (FITC-albumin and bovine serum albumin) are continuously delivered to the preconcentration zone, achieving high preconcentration performance up to 1000-fold. In addition, we demonstrate that the Nafion-patterned tape can be integrated with various geometries (multiplexed preconcentrator) and platforms (string and polymer microfluidic channel). This work would facilitate integration of various ICP devices, including preconcentrators, pH/concentration modulators, and micro mixers, with steady lateral flows in paper-based platforms.

Jobs to Manufacturing Careers: Work-Based Courses. Work-Based Learning in Action

Science.gov (United States)

Kobes, Deborah

2016-01-01

This case study, one of a series of publications exploring effective and inclusive models of work-based learning, finds that work-based courses bring college to the production line by using the job as a learning lab. Work-based courses are an innovative way to give incumbent workers access to community college credits and degrees. They are…

Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments

Directory of Open Access Journals (Sweden)

Tcherepanov Vasily

2004-07-01

Full Text Available Abstract Background With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than gene content because two strains of an organism may share the same set of predicted genes but still differ in their pathogenicity profiles. For example, detailed comparison of multiple isolates of the smallpox virus genome (each approximately 200 kb, with 200 genes is not feasible without new bioinformatics tools. Results A software package, Base-By-Base, has been developed that provides visualization tools to enable researchers to 1 rapidly identify and correct alignment errors in large, multiple genome alignments; and 2 generate tabular and graphical output of differences between the genomes at the nucleotide level. Base-By-Base uses detailed annotation information about the aligned genomes and can list each predicted gene with nucleotide differences, display whether variations occur within promoter regions or coding regions and whether these changes result in amino acid substitutions. Base-By-Base can connect to our mySQL database (Virus Orthologous Clusters; VOCs to retrieve detailed annotation information about the aligned genomes or use information from text files. Conclusion Base-By-Base enables users to quickly and easily compare large viral genomes; it highlights small differences that may be responsible for important phenotypic differences such as virulence. It is available via the Internet using Java Web Start and runs on Macintosh, PC and Linux operating systems with the Java 1.4 virtual machine.

Demographic-Based Content Analysis of Web-Based Health-Related Social Media.

Science.gov (United States)

Sadah, Shouq A; Shahbazi, Moloud; Wiley, Matthew T; Hristidis, Vagelis

2016-06-13

An increasing number of patients from diverse demographic groups share and search for health-related information on Web-based social media. However, little is known about the content of the posted information with respect to the users' demographics. The aims of this study were to analyze the content of Web-based health-related social media based on users' demographics to identify which health topics are discussed in which social media by which demographic groups and to help guide educational and research activities. We analyze 3 different types of health-related social media: (1) general Web-based social networks Twitter and Google+; (2) drug review websites; and (3) health Web forums, with a total of about 6 million users and 20 million posts. We analyzed the content of these posts based on the demographic group of their authors, in terms of sentiment and emotion, top distinctive terms, and top medical concepts. The results of this study are: (1) Pregnancy is the dominant topic for female users in drug review websites and health Web forums, whereas for male users, it is cardiac problems, HIV, and back pain, but this is not the case for Twitter; (2) younger users (0-17 years) mainly talk about attention-deficit hyperactivity disorder (ADHD) and depression-related drugs, users aged 35-44 years discuss about multiple sclerosis (MS) drugs, and middle-aged users (45-64 years) talk about alcohol and smoking; (3) users from the Northeast United States talk about physical disorders, whereas users from the West United States talk about mental disorders and addictive behaviors; (4) Users with higher writing level express less anger in their posts. We studied the popular topics and the sentiment based on users' demographics in Web-based health-related social media. Our results provide valuable information, which can help create targeted and effective educational campaigns and guide experts to reach the right users on Web-based social chatter.

Enriched Title-Based Keyword Index Generation Using dBase II.

Science.gov (United States)

Rajendran, P. P.

1986-01-01

Describes the use of a database management system (DBMS)--dBaseII--to create an enriched title-based keyword index for a collection of news items at the Renewable Energy Resources Information Center of the Asian Institute of Technology. The use of DBMSs in libraries in developing countries is emphasized. (Author/LRW)

Workplace Based Assessment in Psychiatry

Directory of Open Access Journals (Sweden)

Ayse Devrim Basterzi

2009-11-01

Full Text Available Workplace based assessment refers to the assessment of working practices based on what doctors actually do in the workplace, and is predominantly carried out in the workplace itself. Assessment drives learning and it is therefore essential that workplace-based assessment focuses on important attributes rather than what is easiest to assess. Workplacebased assessment is usually competency based. Workplace based assesments may well facilitate and enhance various aspects of educational supervisions, including its structure, frequency and duration etc. The structure and content of workplace based assesments should be monitored to ensure that its benefits are maximised by remaining tailored to individual trainees' needs. Workplace based assesment should be used for formative and summative assessments. Several formative assessment methods have been developed for use in the workplace such as mini clinical evaluation exercise (mini-cex, evidence based journal club assesment and case based discussion, multi source feedback etc. This review discusses the need of workplace based assesments in psychiatry graduate education and introduces some of the work place based assesment methods.

Proximity-Based Asynchronous Messaging Platform for Location-Based Internet of Things Service

Directory of Open Access Journals (Sweden)

Hyeong gon Jo

2016-07-01

Full Text Available The Internet of Things (IoT opens up tremendous opportunities to provide location-based applications. However, despite the services around a user being physically adjacent, common IoT platforms use a centralized structure, like a cloud-computing architecture, which transfers large amounts of data to a central server. This raises problems, such as traffic concentration, long service latency, and high communication cost. In this paper, we propose a physical distance-based asynchronous messaging platform that specializes in processing personalized data and location-based messages. The proposed system disperses traffic using a location-based message-delivery protocol, and has high stability.

Design-Based Research

DEFF Research Database (Denmark)

Gynther, Karsten; Christensen, Ove; Petersen, Trine Brun

2012-01-01

I denne artikel introduceres Design Based Research for første gang på dansk i et videnskabeligt tidsskrift. Artiklen præsenterer de grundlæggende antagelser, som ligger til grund for Design Based Research-traditionen, og artiklen diskuterer de principper, som ligger til grund for gennemførelse af...... et DBR-forskningsprojekt. Med udgangspunkt i forsknings- og udviklingsprojektet ELYK: E-læring, Yderområder og Klyngedannelse, præsenteres den innovationsmodel, som projektet har udviklet med udgangspunkt i Design Based Research traditionen. ELYKs DBR innovationsmodel har vist sig effektiv i forhold...

Memory-Based Shallow Parsing

NARCIS (Netherlands)

Tjong Kim Sang, E.F.

2002-01-01

We present memory-based learning approaches to shallow parsing and apply these to five tasks: base noun phrase identification, arbitrary base phrase recognition, clause detection, noun phrase parsing and full parsing. We use feature selection techniques and system combination methods for improving