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Sample records for actinomycete salinispora tropica

  1. Genome sequencing reveals complex secondary metabolome in themarine actinomycete Salinispora tropica

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    Udwary, Daniel W.; Zeigler, Lisa; Asolkar, Ratnakar; Singan,Vasanth; Lapidus, Alla; Fenical, William; Jensen, Paul R.; Moore, BradleyS.

    2007-05-01

    Recent fermentation studies have identified actinomycetes ofthe marine-dwelling genus Salinispora as prolific natural productproducers. To further evaluate their biosynthetic potential, we analyzedall identifiable secondary natural product gene clusters from therecently sequenced 5,184,724 bp S. tropica CNB-440 circular genome. Ouranalysis shows that biosynthetic potential meets or exceeds that shown byprevious Streptomyces genome sequences as well as other naturalproduct-producing actinomycetes. The S. tropica genome features ninepolyketide synthase systems of every known formally classified family,non-ribosomal peptide synthetases and several hybrid clusters. While afew clusters appear to encode molecules previously identified inStreptomyces species,the majority of the 15 biosynthetic loci are novel.Specific chemical information about putative and observed natural productmolecules is presented and discussed. In addition, our bioinformaticanalysis was critical for the structure elucidation of the novelpolyenemacrolactam salinilactam A. This study demonstrates the potentialfor genomic analysis to complement and strengthen traditional naturalproduct isolation studies and firmly establishes the genus Salinispora asa rich source of novel drug-like molecules.

  2. Marine actinomycetes: a new source of compounds against the human malaria parasite.

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    Jacques Prudhomme

    Full Text Available BACKGROUND: Malaria continues to be a devastating parasitic disease that causes the death of 2 million individuals annually. The increase in multi-drug resistance together with the absence of an efficient vaccine hastens the need for speedy and comprehensive antimalarial drug discovery and development. Throughout history, traditional herbal remedies or natural products have been a reliable source of antimalarial agents, e.g. quinine and artemisinin. Today, one emerging source of small molecule drug leads is the world's oceans. Included among the source of marine natural products are marine microorganisms such as the recently described actinomycete. Members of the genus Salinispora have yielded a wealth of new secondary metabolites including salinosporamide A, a molecule currently advancing through clinical trials as an anticancer agent. Because of the biological activity of metabolites being isolated from marine microorganisms, our group became interested in exploring the potential efficacy of these compounds against the malaria parasite. METHODS: We screened 80 bacterial crude extracts for their activity against malaria growth. We established that the pure compound, salinosporamide A, produced by the marine actinomycete, Salinispora tropica, shows strong inhibitory activity against the erythrocytic stages of the parasite cycle. Biochemical experiments support the likely inhibition of the parasite 20S proteasome. Crystal structure modeling of salinosporamide A and the parasite catalytic 20S subunit further confirm this hypothesis. Ultimately we showed that salinosporamide A protected mice against deadly malaria infection when administered at an extremely low dosage. CONCLUSION: These findings underline the potential of secondary metabolites, derived from marine microorganisms, to inhibit Plasmodium growth. More specifically, we highlight the effect of proteasome inhibitors such as salinosporamide A on in vitro and in vivo parasite development

  3. Production and purification of a bioactive substance against multi-drug resistant human pathogens from the marine-sponge-derived Salinispora sp.

    Institute of Scientific and Technical Information of China (English)

    Satyendra Singh; Pritesh Prasad; Ramesh Subramani; William Aalbersberg

    2014-01-01

    Objective: To isolate, purify, characterize, elucidate structure and evaluate bioactive compounds from the sponge-derived Salinispora sp. FS-0034. Methods: The symbiotic actinomycete strain FS-0034 with an interesting bioactivity profile was isolated from the Fijian marine sponge Theonella sp. Based on colony morphology and obligatory requirement of seawater for growth, and mycelia morphological characteristics the isolate FS-0034 was identified as a Salinispora sp. The bioactive compound was identified by using various spectral analysis of ultraviolet, high resolution electrospray ionization mass spectroscopy, 1H nuclear magnetic resonance, correlated spectroscopy and heteronuclear multiple bond coherence spectral data. A minimum inhibitory concentration assay were performed to evaluate the biological properties of the pure compound against multi-drug resistant pathogens. Results: Bioassay guided fractionation of the ethyl acetate extract of the culture of Salinispora sp. FS-0034 by different chromatographic methods yielded the isolation of an antibacterial compound, which was identified as rifamycin W (compound 1). Rifamycin W was reported for its potent antibacterial activity against methicillin-resistant Staphylococcus aureus, wild typeStaphylococcus aureus and vancomycin-resistant Enterococcus faecium and displayed minimum inhibitory concentrations of 15.62, 7.80 and 250.00 µg/mL, respectively. Conclusions:The present study reported the rifamycin W from sponge-associated Salinispora sp. and it exhibited appreciable antibacterial activity against multi-drug resistant human pathogens which indicated that sponge-associated Actinobacteria are significant sources of bioactive metabolites.

  4. Marine actinomycetes from Madeira Archipelago preliminary taxonomic studies

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    Ilda Santos Sanches

    2014-06-01

    Full Text Available The oceans cover 70 % of the Earth´s surface and harbor most of the planet´s biodiversity. However the microbiological component of this diversity remains relatively unexplored. Marine actinomycetes, are a robust resource of chemically prolific novelty. Producing structurally unique biological active secondary metabolites, generating a valuable source for innovative biotechnology and drug discovery[1,2]. As a consequence, the ecological role of actinomycetes and their marine ecosystems may no longer be neglected. It is crucial to move our research efforts into ocean regions for which we know little or nothing about the indigenous microbial diversity. The Portuguese Archipelago, Madeira is located in the Macaronesian Atlantic region, emerging from the African tectonic plate, found in the extreme south of the Tore-Madeira ridge, has a unique biogeography and biodiversity. These distinctive characteristics combined with the fact that Madeira have never been explored, as far as indigenous marine actinomycetes are concerned, makes it from the scientific point of view, the perfect target for our studies. From 662 marine sediment samples collected along Madeira Archipelago (Figure 1 during June of 2012, covering depths from 10-1310 m, a total of 421 actinomycete strains were isolated. In a previous study, an assemblage of 82 strains was selected for taxonomic identification, having into account representative morphological diversity characteristics of the actinomycetes, isolated from Madeira Archipelago. Based on 16S rRNA gene sequencing, it was observed that the genera Streptomyces, Micromonospora and Salinispora were predominant, 81% [3]. Additionally, in a recent study, our team selected 168 strains with Salinispora look-alike morphological features. From these 28 strains were identified as belonging to the seawater-obligate marine actinomycete genus Salinispora. Representing the first report of Salinispora spp. in the Macaronesian Atlantic Ocean

  5. Production and purification of a bioactive substance against multi-drug resistant human pathogens from the marine-sponge-derived Salinispora sp.

    Institute of Scientific and Technical Information of China (English)

    Satyendra; Singh; Pritesh; Prasad; Ramesh; Subramani; William; Aalbersberg

    2014-01-01

    Objective:To isolate,purify,characterize,elucidate structure and evaluate bioactive compounds from the sponge-derived Salinispora sp.FS-0034.Methods:The symbiotic actinomycete strain FS-0034 with an interesting bioactivity profile was isolated from the Fijian marine sponge Theonella sp.Based on colony morphology and obligatory requirement of seawater for growth,and mycelia morphological characteristics the isolate FS-0034 was identified as a Salinispora sp.The bioactive compound was identified by using various spectral analysis of ultraviolet,high resolution electrospray ionization mass spectroscopy,H nuclear magnetic resonance,correlated spectroscopy and heteronuclear multiple bond coherence spectral data.A minimum inhibitory concentration assay were performed to evaluate the biological properties of the pure compound against multi-drug resistant pathogens.Results:Bioassay guided fractionation of the ethyl acetate extract of the culture of Salinispora sp.FS-0034 by different chromatographic methods yielded the isolation of an antibacterial compound,which was identified as rifamycin W(compound 1).Rifamycin W was reported for its potent antibacterial activity against methicillin-resistant Staphylococcus aureus,wild type Staphylococcus aureus and vancomycin-resistant Enterococcus faecium and displayed minimum inhibitory concentrations of 15.62,7.80 and 250.00 μg/mL,respectively.Conclusions:The present study reported the rifamycin W from sponge-associated Salinispora sp.and it exhibited appreciable antibacterial activity against multi-drug resistant human pathogens which indicated that sponge-associated Actinobacteria are significant sources of bioactive metabolites.

  6. The Madeira Archipelago As a Significant Source of Marine-Derived Actinomycete Diversity with Anticancer and Antimicrobial Potential

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    Prieto-Davó, Alejandra; Dias, Tiago; Gomes, Sofia E.; Rodrigues, Sara; Parera-Valadez, Yessica; Borralho, Pedro M.; Pereira, Florbela; Rodrigues, Cecilia M. P.; Santos-Sanches, Ilda; Gaudêncio, Susana P.

    2016-01-01

    Marine-derived actinomycetes have demonstrated an ability to produce novel compounds with medically relevant biological activity. Studying the diversity and biogeographical patterns of marine actinomycetes offers an opportunity to identify genera that are under environmental pressures, which may drive adaptations that yield specific biosynthetic capabilities. The present study describes research efforts to explore regions of the Atlantic Ocean, specifically around the Madeira Archipelago, where knowledge of the indigenous actinomycete diversity is scarce. A total of 400 actinomycetes were isolated, sequenced, and screened for antimicrobial and anticancer activities. The three most abundant genera identified were Streptomyces, Actinomadura, and Micromonospora. Phylogenetic analyses of the marine OTUs isolated indicated that the Madeira Archipelago is a new source of actinomycetes adapted to life in the ocean. Phylogenetic differences between offshore (>100 m from shore) and nearshore (< 100 m from shore) populations illustrates the importance of sampling offshore in order to isolate new and diverse bacterial strains. Novel phylotypes from chemically rich marine actinomycete groups like MAR4 and the genus Salinispora were isolated. Anticancer and antimicrobial assays identified Streptomyces, Micromonospora, and Salinispora as the most biologically active genera. This study illustrates the importance of bioprospecting efforts at unexplored regions of the ocean to recover bacterial strains with the potential to produce novel and interesting chemistry. PMID:27774089

  7. Structures and comparative characterization of biosynthetic gene clusters for cyanosporasides, enediyne-derived natural products from marine actinomycetes

    OpenAIRE

    Lane, Amy L.; Nam, Sang Jip; Fukuda, Takashi; Yamanaka, Kazuya; Kauffman, Christopher A.; Jensen, Paul R; Fenical, William; Moore, Bradley S.

    2013-01-01

    Cyanosporasides are marine bacterial natural products containing a chlorinated cyclopenta[a]indene core of suspected enediyne polyketide biosynthetic origin. Herein, we report the isolation and characterization of novel cyanosporasides C–F (3–6) from the marine actinomycetesSalinispora pacifica” CNS-143 and Streptomyces sp. CNT-179, highlighted by the unprecedented C-2' N-acetylcysteamine functionalized hexose group of 6. Cloning, sequencing, and mutagenesis of homologous ~50 kb cyanosporas...

  8. Herbal extract targets in Leishmania tropica.

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    Mohammad, Bassim I; Al Shammary, Maani N; Abdul Mageed, Roaa H; Yousif, Nasser Ghaly

    2015-12-01

    The present study aims to investigate the effect of some herbal extract such as phenolic compounds on the viability of Leishmania tropica promastigotes in vitro. Four tested chemical agents (caffeic acid (CA), ferulic acid (FA), syringic acid (SA) and 4-hydroxybenzoic acid (4-HBA)) were used in this study. The viability of Leishmania tropica promastigotes was investigated under five different concentrations (10, 15, 20, 25 and 30 mg/ml) of each agent after (72 h). CA was the most active agent on the promastigotes viability after 72 h exposure to 30 mg/ml concentration so that the parasiticidal effect reach (53 × 10(4)) promastigote/ml. FA is the second agent in parasiticidal effect that parasiticidal effect reach to (50 × 10(4) promastigote/ml) at a concentration (30 mg/ml), 4-HBA is the third agent in parasiticidal effect that reach to (48 × 10(4) promastigote/ml) at a concentration (30 mg/ml), SA is the weakest agent in parasiticidal activity that reach to (44 × 10(4) promastigote/ml) at a concentration (30 mg/ml). It can be concluded that (CA, FA, SA and 4-HBA) possess acidal effect on the Leishmania tropica promastigotes in vitro. PMID:26688631

  9. Leishmania tropica infection in golden jackals and red foxes, Israel.

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    Talmi-Frank, Dalit; Kedem-Vaanunu, Noa; King, Roni; Bar-Gal, Gila Kahila; Edery, Nir; Jaffe, Charles L; Baneth, Gad

    2010-12-01

    During a survey of wild canids, internal transcribed spacer 1 real-time PCR and high-resolution melt analysis identified Leishmania tropica in samples from jackals and foxes. Infection was most prevalent in ear and spleen samples. Jackals and foxes may play a role in the spread of zoonotic L. tropica. PMID:21122235

  10. Leishmania tropica in Stray Dogs in Southeast Iran

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    Mehdi BAMOROVAT

    2015-10-01

    Full Text Available  Background: Cutaneous leishmaniasis (CL caused by Leishmania tropica is endemic in Kerman, southeastern Iran. While dogs have long been implicated as the main domestic reservoirs of L. infantum, etiological agent of zoonotic visceral leishmaniasis (ZVL, they can also carry L. tropica infection. The objective of the present study was to determine molecular identity and to evaluate histopathological changes due to CL in dogs in a well-known focus of anthroponotic CL (ACL in Kerman, southeastern Iran.Methods: This study was carried out in three prospective series from 1994 to 2013 on dogs. Tissue samples were taken from 471 stray dogs. Pathological specimens including skin, spleen, liver and lymph nodes were prepared for paraffin blocks, sectioning and staining for further histopathological examination. PCR amplification of kDNA was performed to identify the causative agent and sequencing. Overall, two out of 471 stray dogs were infected with L. tropica. Hyperplasia of red pulp by the proliferation of histiocytes, lymphocytes, plasma cells and cytoplasm of histiocytes collection of amastigotes was noted.Results: Based on the results of PCR products and sequencing analysis, the parasites isolated from the lesions of two dogs were characterized as L. tropica, corresponding to a band of 830 bp Conclusion: This finding revealed infection with L. tropica in stray dogs in the city and suburbs of Kerman. This information is essential for public health concerns and planning effective future control programs. The role of dogs as potentional reservoir in the epidemiology of ACL needs further investigation. Keywords: Leishmania tropica, Dog, Histopathology, Molecular, Epidemiology, Iran

  11. Attenuation and Production of the Amphotericin B-Resistant Leishmania tropica Strain

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    Khan, Imran; Khan, Momin; Umar, Muhammad Naveed; Oh, Deog-Hwan

    2016-01-01

    Background Infections caused by Leishmania are becoming major public health problems on a global scale. Many species of Leishmania around the world are obtaining resistance levels of up to 15 folds, as estimated by the World Health Organization. Leishmania showing resistance is relatively difficult to observe and maintain in laboratory settings. Objectives The current study deals with the generation of Leishmania tropica strains that are resistant to amphotericin B (amp B). Materials and Methods The L. tropica strain was attenuated using continuous passaging 20 times. The infectivity of L. tropica was confirmed in BALB/c mice. The L. tropica resistant strain was produced in vitro using a continuous increase in drug pressure. The cross resistance of L. tropica to other drugs was also investigated. Results After 20 continuous passages, the BALB/c mice tested negative in the development of leishmaniasis. At a concentration of 0.1 µg/mL, L. tropica showed resistance to amp B. The newly developed promastigotes were 16 times more resistant compared to the resistance of the wild type promastigotes. The resistant L. tropica strain showed cross resistance to itraconazole and had a resistance index that was greater than five. The resistant strain displayed maximum stability for more than three months in the drug-free medium. Conclusions The resistant strain of L. tropica can be produced in laboratories using continuous drug pressure. The attenuated resistant strain has significant implications (both medically and academically) in the ability to overcome resistance.

  12. Production and purification of a bioactive substance against multi-drug resistant human pathogens from the marine-sponge-derived Salinispora sp.

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    Satyendra Singh

    2014-10-01

    Conclusions: The present study reported the rifamycin W from sponge-associated Salinispora sp. and it exhibited appreciable antibacterial activity against multi-drug resistant human pathogens which indicated that sponge-associated Actinobacteria are significant sources of bioactive metabolites.

  13. Sequencing and Gene Expression Analysis of Leishmania tropica LACK Gene.

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    Nour Hammoudeh

    2014-12-01

    Full Text Available Leishmania Homologue of receptors for Activated C Kinase (LACK antigen is a 36-kDa protein, which provokes a very early immune response against Leishmania infection. There are several reports on the expression of LACK through different life-cycle stages of genus Leishmania, but only a few of them have focused on L.tropica.The present study provides details of the cloning, DNA sequencing and gene expression of LACK in this parasite species. First, several local isolates of Leishmania parasites were typed in our laboratory using PCR technique to verify of Leishmania parasite species. After that, LACK gene was amplified and cloned into a vector for sequencing. Finally, the expression of this molecule in logarithmic and stationary growth phase promastigotes, as well as in amastigotes, was evaluated by Reverse Transcription-PCR (RT-PCR technique.The typing result confirmed that all our local isolates belong to L.tropica. LACK gene sequence was determined and high similarity was observed with the sequences of other Leishmania species. Furthermore, the expression of LACK gene in both promastigotes and amastigotes forms was confirmed.Overall, the data set the stage for future studies of the properties and immune role of LACK gene products.

  14. Discovering the recondite secondary metabolome spectrum of Salinispora species: a study of inter-species diversity.

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    Utpal Bose

    Full Text Available Patterns of inter-species secondary metabolite production by bacteria can provide valuable information relating to species ecology and evolution. The complex nature of this chemical diversity has previously been probed via directed analyses of a small number of compounds, identified through targeted assays rather than more comprehensive biochemical profiling approaches such as metabolomics. Insights into ecological and evolutionary relationships within bacterial genera can be derived through comparative analysis of broader secondary metabolite patterns, and this can also eventually assist biodiscovery search strategies for new natural products. Here, we investigated the species-level chemical diversity of the two marine actinobacterial species Salinispora arenicola and Salinispora pacifica, isolated from sponges distributed across the Great Barrier Reef (GBR, via their secondary metabolite profiles using LC-MS-based metabolomics. The chemical profiles of these two species were obtained by UHPLC-QToF-MS based metabolic profiling. The resultant data were interrogated using multivariate data analysis methods to compare their (biochemical profiles. We found a high level of inter-species diversity in strains from these two bacterial species. We also found rifamycins and saliniketals were produced exclusively by S. arenicola species, as the main secondary metabolites differentiating the two species. Furthermore, the discovery of 57 candidate compounds greatly increases the small number of secondary metabolites previously known to be produced by these species. In addition, we report the production of rifamycin O and W, a key group of ansamycin compounds, in S. arenicola for the first time. Species of the marine actinobacteria harbour a much wider spectrum of secondary metabolites than suspected, and this knowledge may prove a rich field for biodiscovery as well as a database for understanding relationships between speciation, evolution and chemical

  15. In Vitro and In Vivo Antileishmanial Effects of Pistacia khinjuk against Leishmania tropica and Leishmania major

    OpenAIRE

    Behrouz Ezatpour; Ebrahim Saedi Dezaki; Hossein Mahmoudvand; Mojgan Azadpour; Fatemeh Ezzatkhah

    2015-01-01

    The present study aims to evaluate the in vitro and in vivo antileishmanial activities of Pistacia khinjuk Stocks (Anacardiaceae) alcoholic extract and to compare its efficacy with a reference drug, meglumine antimoniate (MA, Glucantime), against Leishmania tropica and Leishmania major. This extract (0–100 µg/mL) was evaluated in vitro against promastigote and intracellular amastigote forms of L. tropica (MRHO/IR/75/ER) and then tested on cutaneous leishmaniasis (CL) in male BALB/c mice with ...

  16. Therapeutically Active Biomolecules from Marine Actinomycetes

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    Mani Jayaprakashvel

    2012-09-01

    Full Text Available For the past few centuries, the biological sources of terrestrial origin have been explored and exploited for bioactive metabolites. This has resulted in the stagnancy of discovering either novel compounds or compounds with novel bioactivities. Thus, researchers across the globe have started exploring our big Oceans, for the search of bioactive metabolites. During the past few decades, the research on bioactive metabolites from marine biological resources has geared up and among the sources marine actinomycetes are proved to be best. Marine actinomycetes, the filamentous bacteria from marine environment have been intensively studied for bioactive metabolites. The biological diversity of marine actinomycetes was found to be enormous, thanks to culture dependent and culture independent biodiversity approaches. This great diversity of marine actinomycetes has offered greater chemical diversity. The diverse chemical compounds of marine actinomycetes have been found to have various biological activities such as antimicrobial, anti-tumor, anti-malarial, anti-algal, antioxidant, anti-inflammatory etc. These various bioactive metabolites of marine actinomycetes are having scope for developing as potent therapeutic agents. The potential of marine actinomycetes is rightly realized though the current biological wealth of these organisms isrelatively unexplored.

  17. Lipophosphoglycan and secreted acid phosphatase of Leishmania tropica share species-specific epitopes.

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    Jaffe, C L; Perez, L; Schnur, L F

    1990-06-01

    Several species-specific monoclonal antibodies (T11, T13-T15) which only react with Leishmania tropica, recognize phosphorlated carbohydrate epitopes on lipophosphoglycan and the structurally related molecule, phosphoglycan, which is shed by promastigotes into spent culture medium. During immunoaffinity isolation of [32P]orthophosphate-labeled phosphoglycan on monoclonal antibody T15 conjugated to Sepharose 4B, a high-Mr component (approx. 200,000) was co-purified. The latter material is metabolically labeled with [35S]methionine and [3H]glucosamine. This glycoprotein was separated from phosphoglycan by chromatography on lentil lectin resin. The glycoprotein exhibited a L-tatrate-sensitive acid phosphatase activity, typical of secreted acid phosphatase (EC 3.1.3.2) from Leishmania. Monospecific antibodies to Leishmania donovani-secreted acid phosphatase selectively precipitated the L. tropica enzyme from immunoaffinity purified mixtures of the two antigens, and monoclonal antibodies to lipophosphoglycan precipitate the pure enzyme. Species-specific monoclonal antibodies to L. major lipophosphoglycan also recognized both L. tropica antigens. Treatment of the acid phosphatase with periodate or phosphodiesterase I abolished binding by the monoclonal antibodies to the pure enzyme. These results demonstrate that the two major secreted glycoconjugates of Leishmania tropica, the lipophosphoglycan and the acid phosphatase, share species-specific phosphorylated carbohydrate epitope(s). PMID:1697935

  18. Investigation of Double-Band Electrophoretic Pattern of ITS-rDNA Region in Iranian Isolates of Leishmania Tropica

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    MA Ghatee

    2013-06-01

    Full Text Available Background: Leishmania tropica is a genetically divergent species. Amplification of entire internal tran­scribed spacer (ITS region of L. tropica isolates obtained from Bam district, one of the well known focus of anthroponotic cutaneous leishmaniasis ACL( in Iran, revealed a double-band pat­tern in agarose gel electrophoresis. This study explains how this pattern occurs.Methods: Twenty seven L. tropica smear preparations were collected from Bam district, south east Iran, and eight L. major and one L. infantum smear preparations were gathered from Shiraz, south west Iran. Furthermore one L. major and one L. infantum cultured standard strains were tested using entire ITS-PCR to survey their electrophoretic pattern. The ITS sequences of L. tropica, L. major, and L. infantum already deposited in GenBank were analyzed. Analysis of GenBank sequences of L. tropica revealed two groups of sequences based on length size, one group having a 100 bp gap. Therefore, a new re­verse primer namely LITS-MG was designed to exclude this gap in PCR products.Results: Whole ITS fragment amplification resulted in a double-band pattern in all L. tropica cases, while a sharp single band was observed for L. infantum and L. major isolates. This result was correspond­ing to the result obtained from in silico analysis of GenBank sequences. Use of LITS-MG primer was expectedly resulted in a single band including ITS1, 5.8s and partial ITS2 product for L. tropica which is appropriate for following molecular studies such as sequencing or restriction analysis.Conclusion: Sequences analysis of GenBank L. tropica sequences and following practical laboratory tests revealed at least two alleles in L. tropica which were confirmed in Bam isolates. This especial double-band pattern is because of a 100 bp fragment difference within ITS-rDNA alleles

  19. Detection and identification of novel actinomycetes.

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    Williams, S T; Locci, R; Beswick, A; Kurtböke, D I; Kuznetsov, V D; Le Monnier, F J; Long, P F; Maycroft, K A; Palma, R A; Petrolini, B

    1993-10-01

    The actinomycetes are well known as a group of filamentous, Gram-positive bacteria that produce many useful secondary metabolites, including antibiotics and enzymes. Although they have been intensively studied for both theoretical and practical objectives, there is much scope for developing our basic knowledge of the means of detection and isolation of these microbes. This session concentrated on new methods for the detection and identification of novel actinomycetes from a range of environments. Approaches to the detection of actinomycetes ranged from investigations of neglected habitats and extreme environments (e.g. alkaline soils and oil drills) to the analysis of DNA extracted from the environment and use of specific phages. The continuing problems of the identification of actinomycete isolates were also considered. Topics discussed included use of phage typing, DNA probes, and correlation between phenetic and genotypic species of Streptomyces.

  20. Novel method for selective isolation of actinomycetes.

    OpenAIRE

    Hirsch, C F; Christensen, D L

    1983-01-01

    A new technique for the selective isolation of actinomycetes from natural mixed microbial populations is described. A nutrient agar medium was overlaid with a 0.22- to 0.45-microns-pore cellulose ester membrane filter, and the surface of the filter was inoculated. During incubation, the branched mycelia of the actinomycetes penetrated the filter pores to the underlying agar medium, whereas growth of nonactinomycete bacteria was restricted to the filter surface. The membrane filter was removed...

  1. Draft Genome Sequence of Phosphate-Solubilizing Bacterium Paraburkholderia tropica Strain P-31 Isolated from Pomegranate (Punica granatum) Rhizosphere.

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    Kaur, Chandandeep; Selvakumar, Govindan; Ganeshamurthy, Arakalgud Nanjundiah

    2016-01-01

    We report the 8.9 Mb draft genome sequence of phosphate-solubilizing bacterium Paraburkholderia tropica strain P-31, isolated from pomegranate (Punica granatum) rhizosphere. The draft genome sequence of Paraburkholderia tropica strain P-31 consists of 8,881,246 bp with a G+C content of 64.7%, 8,039 protein-coding genes, and 49 RNAs. PMID:27540068

  2. In Vitro and In Vivo Antileishmanial Effects of Pistacia khinjuk against Leishmania tropica and Leishmania major.

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    Ezatpour, Behrouz; Saedi Dezaki, Ebrahim; Mahmoudvand, Hossein; Azadpour, Mojgan; Ezzatkhah, Fatemeh

    2015-01-01

    The present study aims to evaluate the in vitro and in vivo antileishmanial activities of Pistacia khinjuk Stocks (Anacardiaceae) alcoholic extract and to compare its efficacy with a reference drug, meglumine antimoniate (MA, Glucantime), against Leishmania tropica and Leishmania major. This extract (0-100 µg/mL) was evaluated in vitro against promastigote and intracellular amastigote forms of L. tropica (MRHO/IR/75/ER) and then tested on cutaneous leishmaniasis (CL) in male BALB/c mice with L. major to reproduce the antileishmanial activity topically. In vitro, P. khinjuk extract significantly (P vera extract had in vitro and in vivo effectiveness against L. major. Obtained findings also provide the scientific evidences that natural plants could be used in the traditional medicine for the prevention and treatment of CL. PMID:25815025

  3. Experimentelle Untersuchung des pathogenen Adhäsionsvorganges der Malaria tropica mit Schwingquarzsensoren

    OpenAIRE

    Kleiner, Stefani

    2011-01-01

    Die Fähigkeit, Plasmodium falciparum-infizierter Erythrozyten über Rezeptor-Ligand-Wechselwirkungen an vaskuläres Endothel zu adhärieren, ist das Schlüsselereignis der Pathogenese der Malaria tropica und der damit verbundenen klinischen Symptomatik. Plasmodium falciparum induziert die Expression von PfEMP 1 an der Oberfläche parasitierter Erythrozyten und ermöglicht dadurch die Anheftung an verschiedenste Rezeptoren der Endothelzellen. Die Zielvorgabe der vorliegenden Arbeit war die experimen...

  4. In Vitro and In Vivo Antileishmanial Effects of Pistacia khinjuk against Leishmania tropica and Leishmania major

    Directory of Open Access Journals (Sweden)

    Behrouz Ezatpour

    2015-01-01

    Full Text Available The present study aims to evaluate the in vitro and in vivo antileishmanial activities of Pistacia khinjuk Stocks (Anacardiaceae alcoholic extract and to compare its efficacy with a reference drug, meglumine antimoniate (MA, Glucantime, against Leishmania tropica and Leishmania major. This extract (0–100 µg/mL was evaluated in vitro against promastigote and intracellular amastigote forms of L. tropica (MRHO/IR/75/ER and then tested on cutaneous leishmaniasis (CL in male BALB/c mice with L. major to reproduce the antileishmanial activity topically. In vitro, P. khinjuk extract significantly (P<0.05 inhibited the growth rate of promastigote (IC50 58.6±3.2 µg/mL and intramacrophage amastigotes (37.3±2.5 µg/mL of L. tropica as a dose-dependent response. In the in vivo assay, after 30 days of treatment, 75% recovery was observed in the infected mice treated with 30% extract. After treatment of the subgroups with the concentration of 20 and 30% of P. khinjuk extract, mean diameter of lesions was significantly (P<0.05 reduced. To conclude, the present investigation demonstrated that P. vera extract had in vitro and in vivo effectiveness against L. major. Obtained findings also provide the scientific evidences that natural plants could be used in the traditional medicine for the prevention and treatment of CL.

  5. Fermentative production of carotenoids from marine actinomycetes

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    B Ashokkumar

    2009-12-01

    Full Text Available Background and Objectives: In marine actinomycetes, carotenoid production occurs in constitutive, light-dependent or cryptic manner. The present work deals with the fermentative production of carotenoids from marine actinomycetes."nMaterials and Methods: Marine actinomycetes namely Streptomyces strain AQBMM35 was isolated from the marine sponge Mycale mytilorum collected from South West coast of India using ISP media. The Streptomyces isolates were characterized for their colony characteristics, morphological properties, physiological and biochemical properties and were tentatively identified. Fermentation of the strain under fluorescent white light was carried out for the production of carotenoids. UV spectrum, TLC and HPLC analysis were done for the confirmation of carotenoids."nResults: The characteristics studied strongly suggest that the strain AQBMM35 belongs to the genus Streptomyces sp. It has been found that Streptomyces strain (AQBMM35 fermenting under fluorescent white light produced carotenoids. Spectrophotometric analysis of the carotenoid fraction revealed a peak at 280 nm. TLC analysis of the carotenoid extract showed the presence of phytoene (Rf of 0.81. HPLC confirmed the production of phytoene when compared with standards."nConclusion: The fermenting sponge-associated Streptomyces isolate (AQBMM35 produced carotenoids namely phytoene. If this symbiotic Streptomyces strain, from which secondary metabolite like carotenoids are derived, can be cultured under light, then it can be used for mass production of precursor pigment and it can be used as an antioxidant and also as a food additive.

  6. Leishmania tropica: the effect of darkness and light on biological activities in vitro.

    Science.gov (United States)

    Allahverdiyev, Adil M; Koc, Rabia Cakir; Ates, Sezen Canim; Bagirova, Malahat; Elcicek, Serhat; Oztel, Olga Nehir

    2011-08-01

    Leishmania parasites can be exposed to effects of light in their vectors and hosts, at various periods. However, there is no information about the effects of light on Leishmania parasites. The aim of this study is to investigate the effects of light on various cell parameters of Leishmania tropica, in vitro. All experiments were conducted on L. tropica promastigotes and amastigote-macrophage cultures, using flow cytometric analysis, MTT and phenol-sulfuric acid assay, DAPI and Giemsa. The results showed that the morphology of parasites has changed; the cell cycle has been affected and this caused parasites to remain at G0/G1 phase. Furthermore the proliferation, infectivity, glucose consumption and mitochondrial dehydrogenase activities of parasites were decreased. Thus, for the first time, in this study, the effects of light on biological activities of Leishmania parasites were shown. These new information about parasites' biology, would be very important to investigate the effects of light on the parasites in infected vectors and hosts. PMID:21510933

  7. The Development of Leishmania tropica in Sand Flies (Diptera: Psychodidae): A Comparison of Colonies Differing in Geographical Origin and a Gregarine Coinfection.

    Science.gov (United States)

    Jancarova, Magdalena; Hlavacova, Jana; Volf, Petr

    2015-11-01

    Phlebotomus sergenti Parrot, 1917 is the main vector of Leishmania tropica; however, its broad geographical range and molecular heterogeneity suggest possible variability in vector competence. We infected laboratory-reared P. sergenti originating from Turkey and Israel to compare their susceptibility to L. tropica. In both tested groups, heavy late-stage infections with the presence of metacyclic forms and colonization of the stomodeal valve were observed. The similar development of Leishmania in both sand fly colonies indicates that the different geographical origin of P. sergenti is not reflected by a different vector competence to L. tropica. Additionally, we tested the effect of the gregarine Psychodiella sergenti on L. tropica coinfections; no apparent differences were found between P. sergenti infected or not infected by gregarines.

  8. Actinomycetes in garden soils of the city of Kirov

    Science.gov (United States)

    Shirokikh, I. G.; Solov'eva, E. S.; Ashikhmina, T. Ya.

    2013-05-01

    The population density, diversity, and structure of the actinomycetic complexes were studied in garden soils of the city of Kirov. The relationships between the structure of the complexes and the acidity, the concentrations of the mobile forms of heavy metals, and the soil humus content were analyzed. The specific features of the actinomycetic population in the garden soils of the city in comparison with the transport ecotopes and suburban territories were revealed. It was demonstrated that the actinomycetic complexes in the garden soils preserve their structural similarity with the actinomycetic complexes of the suburban forest parks despite certain changes in the composition of the dominant species and the relative abundance of the separate taxa. The obtained data indicate that the garden plots in the city contribute to the preservation of ecologically balanced ecosystems.

  9. Site-Specific Recombination Strategies for Engineering Actinomycete Genomes

    OpenAIRE

    Herrmann, Simone; Siegl, Theresa; Luzhetska, Marta; Petzke, Lutz; Jilg, Caroline; Welle, Elisabeth; Erb, Annette; Leadlay, Peter F; Bechthold, Andreas; Luzhetskyy, Andriy

    2012-01-01

    The feasibility of using technologies based on site-specific recombination in actinomycetes was shown several years ago. Despite their huge potential, these technologies mostly have been used for simple marker removal from a chromosome. In this paper, we present different site-specific recombination strategies for genome engineering in several actinomycetes belonging to the genera Streptomyces, Micromonospora, and Saccharothrix. Two different systems based on Cre/loxP and Dre/rox have been ut...

  10. The medically important aerobic actinomycetes: epidemiology and microbiology.

    OpenAIRE

    McNeil, M. M.; Brown, J. M.

    1994-01-01

    The aerobic actinomycetes are soil-inhabiting microorganisms that occur worldwide. In 1888, Nocard first recognized the pathogenic potential of this group of microorganisms. Since then, several aerobic actinomycetes have been a major source of interest for the commercial drug industry and have proved to be extremely useful microorganisms for producing novel antimicrobial agents. They have also been well known as potential veterinary pathogens affecting many different animal species. The medic...

  11. Comparative proteomic analysis of two wasps venom, Vespa tropica and Vespa affinis.

    Science.gov (United States)

    Rungsa, Prapenpuksiri; Incamnoi, Paroonkorn; Sukprasert, Sophida; Uawonggul, Nunthawun; Klaynongsruang, Sompong; Daduang, Jureerut; Patramanon, Rina; Roytrakul, Sittiruk; Daduang, Sakda

    2016-09-01

    Vespid venom is composed of many bioactive compounds. The venom of the banded tiger wasp (Vespa affinis, or VA) and the great banded wasp (Vespa tropica, or VT)-which are locally found in the northeastern part of Thailand and are well known for their life-threatening venom potency-were comparatively studied in terms of potency, composition and biological activity. Clinical studies that included word-of-mouth information shared by traditional healers in local areas noted that the venom of VT is more potent than that of VA. Our previous study showed that the venom of VA is lower in potency (PD50 = 12.5 μg/g body weight) than that of VT (PD50 = 3 μg/g body weight). Analysis with the PAGE technique showed that these two venoms showed similar patterns of active proteins. Most protein spots were basic proteins at an isoelectric point (pI) ranging from 5 to 10, with molecular weights between 27 and 50 kDa. These spots were identified as hyaluronidase, phospholipase, antigen 5, dipeptidyl peptidase and albumin-like protein. The proportion of hyaluronidase was 2.5 times higher in VT than in VA. VT also showed higher hyaluronidase, phospholipase and dipeptidyl peptidase activities, suggesting that these components made VT venom more potent than VA venom. PMID:27288895

  12. Antibacterial activity of some actinomycetes from Tamil Nadu, India

    Institute of Scientific and Technical Information of China (English)

    Pachaiyappan Saravana Kumar; John Poonga Preetam Raj; Veeramuthu Duraipandiyan; Savarimuthu Ignacimuthu

    2012-01-01

    Objective:To isolate novel actinomycetes and to evaluate their antibacterial activity. Methods:Three soil samples were collected from Vengodu (village) in Kanchipuram district, Tamil Nadu, India. Actinomycetes were isolated using serial dilution and plating method on actinomycetes isolation agar. Results: Totally 35 isolates were obtained on the basis of colony characteristics on actinomycetes isolation agar. All the isolates were screened for antibacterial activity by cross streak method. Medium and optimization of day were done for the potent strains using Nathan's agar well diffusion method. Isolation of bioactive compounds from significant active isolates was done by using different media. The most active isolate VAS 10 was identified as Actinobacterium Loyola PBT VAS 10 (accession No. JF501398) using 16s rRNA sequence method. The hexane, ethyl acetate, dichloromethane and butanol extracts of VAS 10 were tested against bacteria. The maximum antibacterial activity was observed in dichloromethane and ethyl acetate;maximum zones of inhibition were observed against Enterococcus durans. The rRNA secondary structure and the restriction sites of Actinobacterium Loyola VAS 10 were predicted using Genebee and NEBCutter online tools respectively. Conclusions: The present study showed that among the isolated actinomycetes, Actinobacterium Loyola PBT VAS 10 (accession No. JF501398) showed good antibacterial activity against the tested bacteria.

  13. Antimicrobial potential of Actinomycetes species isolated from marine environment

    Institute of Scientific and Technical Information of China (English)

    Valli S; Suvathi Sugasini S; Aysha OS; Nirmala P; Vinoth Kumar P; Reena A

    2012-01-01

    Objective:To evaluate the antimicrobial activity of Actinomycetes species isolated from marine environment. Methods: Twenty one strains of Actinomycetes were isolated from samples of Royapuram, Muttukadu, Mahabalipuram sea shores and Adyar estuary. Preliminary screening was done using cross-streak method against two gram-positive and eight gram-negative bacteria. The most potent strains C11 and C12 were selected from which antibacterial substances were extracted. The antibacterial activities of the extracts were performed using Kirby-Bauer disc diffusion method. Molecular identification of those isolates was done. Results:All those twenty one isolates were active against at least one of the test organisms. Morphological characters were recorded. C11 showed activity against Staphylococcus species (13.0±0.5 mm), Vibrio harveyi (11.0±0.2 mm), Pseudomonas species (12.0±0.3 mm). C12 showed activity against Staphylococcus species (16.0±0.4 mm), Bacillus subtilis (11.0±0.2 mm), Vibrio harveyi (9.0±0.1 mm), Pseudomonas species (10.0±0.2 mm). 16S rRNA pattern strongly suggested that C11 and C12 strains were Streptomyces species. Conclusions: The results of the present investigation reveal that the marine Actinomycetes from coastal environment are the potent source of novel antibiotics. Isolation, characterization and study of Actinomycetes can be useful in discovery of novel species of Actinomycetes.

  14. Phlebotomus sergenti in a cutaneous leishmaniasis focus in Azilal province (High Atlas, Morocco: molecular detection and genotyping of Leishmania tropica, and feeding behavior.

    Directory of Open Access Journals (Sweden)

    Malika Ajaoud

    2015-03-01

    Full Text Available Phlebotomus (Paraphlebotomus sergenti is at least one of the confirmed vectors for the transmission of cutaneous leishmaniasis caused by Leishmania tropica and distributed widely in Morocco. This form of leishmaniasis is considered largely as anthroponotic, although dogs were found infected with Leishmania tropica, suggestive of zoonosis in some rural areas.This survey aimed at (i studying the presence of Leishmania in field caught Phlebotomus sergenti, (ii investigating genetic diversity within Leishmania tropica and (iii identifying the host-blood feeding preferences of Phlebotomus sergenti. A total of 4,407 sand flies were collected in three rural areas of Azilal province, using CDC miniature light traps. Samples collected were found to consist of 13 species: Phlebotomus spp. and 3 Sergentomyia spp. The most abundant species was Phlebotomus sergenti, accounting for 45.75 % of the total. 965 female Phlebotomus sergenti were screened for the presence of Leishmania by ITS1-PCR-RFLP, giving a positive rate of 5.7% (55/965, all being identified as Leishmania tropica. Nucleotide heterogeneity of PCR-amplified ITS1-5.8S rRNA gene-ITS2 was noted. Analyses of 31 sequences obtained segregated them into 16 haplotypes, of which 7 contain superimposed peaks at certain nucleotide positions, suggestive of heterozygosity. Phlebotomus sergenti collected were found to feed on a large variety of vertebrate hosts, as determined by Cytochrome b sequencing of the DNA from the blood meals of 64 engorged females.Our findings supported the notion that Phlebotomus sergenti is the primary vector of Leishmania tropica in this focus, and that the latter is genetically very heterogeneous. Furthermore, our results might be suggestive of a certain level of heterozygosity in Leishmania tropica population. This finding, as well as the feeding of the vectors on different animals are of interest for further investigation.

  15. Genetic, serological and biochemical characterization of Leishmania tropica from foci in northern Palestine and discovery of zymodeme MON-307

    Directory of Open Access Journals (Sweden)

    Azmi Kifaya

    2012-06-01

    Full Text Available Abstract Background Many cases of cutaneous leishmaniasis (CL have been recorded in the Jenin District based on their clinical appearance. Here, their parasites have been characterized in depth. Methods Leishmanial parasites isolated from 12 human cases of CL from the Jenin District were cultured as promastigotes, whose DNA was extracted. The ITS1 sequence and the 7SL RNA gene were analysed as was the kinetoplast minicircle DNA (kDNA sequence. Excreted factor (EF serotyping and multilocus enzyme electrophoresis (MLEE were also applied. Results This extensive characterization identified the strains as Leishmania tropica of two very distinct sub-types that parallel the two sub-groups discerned by multilocus microsatellite typing (MLMT done previously. A high degree of congruity was displayed among the results generated by the different analytical methods that had examined various cellular components and exposed intra-specific heterogeneity among the 12 strains. Three of the ten strains subjected to MLEE constituted a new zymodeme, zymodeme MON-307, and seven belonged to the known zymodeme MON-137. Ten of the 15 enzymes in the profile of zymodeme MON-307 displayed different electrophoretic mobilities compared with the enzyme profile of the zymodeme MON-137. The closest profile to that of zymodeme MON-307 was that of the zymodeme MON-76 known from Syria. Strains of the zymodeme MON-307 were EF sub-serotype A2 and those of the zymodeme MON-137 were either A9 or A9B4. The sub-serotype B4 component appears, so far, to be unique to some strains of L. tropica of zymodeme MON-137. Strains of the zymodeme MON-137 displayed a distinctive fragment of 417 bp that was absent in those of zymodeme MON-307 when their kDNA was digested with the endonuclease RsaI. kDNA-RFLP after digestion with the endonuclease MboI facilitated a further level of differentiation that partially coincided with the geographical distribution of the human cases from which the strains

  16. CRISPR-Cas9 Based Engineering of Actinomycetal Genomes

    DEFF Research Database (Denmark)

    Tong, Yaojun; Charusanti, Pep; Zhang, Lixin;

    2015-01-01

    . To facilitate the genetic manipulation of actinomycetes, we developed a highly efficient CRISPR-Cas9 system to delete gene(s) or gene cluster(s), implement precise gene replacements, and reversibly control gene expression in actinomycetes. We demonstrate our system by targeting two genes, actIORF1 (SCO5087......) and actVB (SCO5092), from the actinorhodin biosynthetic gene cluster in Streptomyces coelicolor A3(2). Our CRISPR-Cas9 system successfully inactivated the targeted genes. When no templates for homology-directed repair (HDR) were present, the site-specific DNA double-strand breaks (DSBs) introduced by Cas9....... Moreover, we developed a system to efficiently and reversibly control expression of target genes, deemed CRISPRi, based on a catalytically dead variant of Cas9 (dCas9). The CRISPR-Cas9 based system described here comprises a powerful and broadly applicable set of tools to manipulate actinomycetal genomes....

  17. Competitive strategies differentiate closely related species of marine actinobacteria.

    Science.gov (United States)

    Patin, Nastassia V; Duncan, Katherine R; Dorrestein, Pieter C; Jensen, Paul R

    2016-02-01

    Although competition, niche partitioning, and spatial isolation have been used to describe the ecology and evolution of macro-organisms, it is less clear to what extent these principles account for the extraordinary levels of bacterial diversity observed in nature. Ecological interactions among bacteria are particularly challenging to address due to methodological limitations and uncertainties over how to recognize fundamental units of diversity and link them to the functional traits and evolutionary processes that led to their divergence. Here we show that two closely related marine actinomycete species can be differentiated based on competitive strategies. Using a direct challenge assay to investigate inhibitory interactions with members of the bacterial community, we observed a temporal difference in the onset of inhibition. The majority of inhibitory activity exhibited by Salinispora arenicola occurred early in its growth cycle and was linked to antibiotic production. In contrast, most inhibition by Salinispora tropica occurred later in the growth cycle and was more commonly linked to nutrient depletion or other sources. Comparative genomics support these differences, with S. arenicola containing nearly twice the number of secondary metabolite biosynthetic gene clusters as S. tropica, indicating a greater potential for secondary metabolite production. In contrast, S. tropica is enriched in gene clusters associated with the acquisition of growth-limiting nutrients such as iron. Coupled with differences in growth rates, the results reveal that S. arenicola uses interference competition at the expense of growth, whereas S. tropica preferentially employs a strategy of exploitation competition. The results support the ecological divergence of two co-occurring and closely related species of marine bacteria by providing evidence they have evolved fundamentally different strategies to compete in marine sediments.

  18. [Isolation of Actinomycetes synthesizing proteases with thrombolytic activity].

    Science.gov (United States)

    Lysenko, S V; Salivonik, S M

    1988-01-01

    Proteases with the thrombolytic activity were studied in 212 strains of actinomycetes isolated from different soils of the Soviet Union. The cultures belonged to the genera Micromonospora, Nocardia and Streptomyces. Proteases were synthesized by 41% of the studied actinomycetes and some of their strains completely dissolved in vitro artificially obtained blood thrombi within 120-240 min. In the Streptomyces genus, more active strains were found in the groups Flavus, Fradia and Globisporus. The groups Olivaceus, Violaceus and Viridis had less active strains. PMID:3062331

  19. Evaluation of the antileishmanial and cytotoxic effects of various extracts of garlic (Allium sativum) on Leishmania tropica.

    Science.gov (United States)

    Mahmoudvand, Hossein; Sepahvand, Peyman; Jahanbakhsh, Sareh; Azadpour, Mozhgan

    2016-06-01

    Cutaneous leishmaniasis (CL) is a major public health problem in tropical and subtropical countries worldwide. Treatment of CL by pentavalent antimony compounds remains a challenge because of limited efficacy, toxic side effects and drug resistance. In the present study, in vitro antileishmanial and cytotoxic activity of garlic extracts against promastigote forms of Leishmania tropica and murine macrophages was evaluated by colorimetric cell viability (MTT) assay. The results revealed that the methanolic and aqueous extracts of garlic were effective in inhibiting promastigote growth of L. tropica with IC50 (50 % inhibitory concentrations) values 12.3 and 19.2 µg/ml, respectively. In addition, methanolic and aqueous extracts of garlic showed low cytotoxicity against murine macrophages with CC50 (cytotoxicity concentration for 50 % of cells) values 291.4 and 348.2 µg/ml, respectively. Findings of present study were the first step in the search for new antileishmanial drugs. However, further works are required to evaluate exact effect of these extracts in volunteer human subjects. PMID:27413315

  20. ISOLATION OF ENDOPHYTIC ACTINOMYCETES FROM MEDICINAL PLANTS AND ITS MUTATIONAL EFFECT IN BIOCONTROL ACTIVITY

    Directory of Open Access Journals (Sweden)

    Hema Shenpagam N.*, D. Kanchana Devi ** and Sinduja G.

    2012-11-01

    Full Text Available In the present study, the endophytic actinomycetes were collected from three medicinal plants Azadiracta indica, Ocimum sanctum and Phyllanthus amarus. Endophytic actinomycetes were isolated using different media like Starch casein agar, Starch casein nitrate agar, Actinomycetes isolation agar and Soyabean agar, while it showed more colonies in Starch casein agar. The endophytic actinomycetes were stained and biochemical tests were performed. Antimicrobial compound was purified from the filtrate by ethanol extraction method. Antagonistic activities of endophytic actinomycetes isolates were tested against bacterial pathogens (Staphylococcus aureus, Streptococcus pyogenes, Klebsiella pneumoniae and Pseudomonas aeruginosa and the fungi Rhizopus. For the selected isolates antibiotic resistance was checked using various antibiotic discs like Amoxycillin, Penicillin, Rifampicin and Ampicillin. The strains which showed efficient antibacterial activity were selected to study the effect of mutation by physical and chemical method. In this study, UV mutated endophytic actinomycetes increase antibiotic production than non-mutated endophytic Actinomycetes, whereas in chemical mutation it does not increase the antibiotic production.

  1. The vectorial competence of Phlebotomus sergenti is specific for Leishmania tropica and is controlled by species-specific, lipophosphoglycan-mediated midgut attachment.

    Science.gov (United States)

    Kamhawi, S; Modi, G B; Pimenta, P F; Rowton, E; Sacks, D L

    2000-07-01

    The vectorial competence of Phlebotomus sergenti for 3 Old World species of Leishmania, L. tropica, L. major and L. donovani, was investigated in vivo and by in vitro midgut binding assays using living promastigotes and purified lipophosphoglycan (LPG). P. sergenti consistently showed a high specificity for L. tropica strains, which were able to develop mature, potentially transmissible infections. The loss of infection with L. major and L. donovani correlated with the excretion of the digested bloodmeal. These strains were able to produce sustained infections in the midguts of their appropriate vectors, P. papatasi and P. argentipes, respectively. In in vitro binding assays, a significantly higher number of L. tropica procyclic promastigotes attached to the midgut lining of P. sergenti, compared to those of L. major and L. donovani (P phosphoglycan (PG) from L. tropica compared with PGs from L. major or L. donovani. The results provide further evidence that LPG structural polymorphisms are driven by the species diversity of molecules present on the sandfly midgut that function as parasite attachment sites. PMID:11085222

  2. A New Degraded Sesquiterpene from Marine Actinomycete Streptomyces sp. 0616208

    Institute of Scientific and Technical Information of China (English)

    Xiu Chao XIE; Wen Li MEI; You Xing ZHAO; Kui HONG; Hao Fu DAI

    2006-01-01

    A new degraded sesquiterpene was isolated from the marine actinomycete Streptomyces sp. 0616208. Its structure was elucidated as (1α, 4aα, 5α, 7β, 8aβ)-5, 8a-dimethyl-decahydrona-phthalene-1, 4a, 7-triol on the basis of spectroscopic data.

  3. Environmental and metabolomic study of antibiotic production by actinomycetes

    NARCIS (Netherlands)

    Zhu, Hua

    2014-01-01

    This thesis may be regarded as a concept work, to see how feasible drug discovery approaches still are. For this, a strain collection was built up consisting of actinomycetes from soil in the Qinling and Himalaya mountains, which were subsequently tested for antibiotic production against multi-drug

  4. Development of assays using hexokinase and phosphoglucomutase gene sequences that distinguish strains of Leishmania tropica from different zymodemes and microsatellite clusters and their application to Palestinian foci of cutaneous leishmaniasis.

    Directory of Open Access Journals (Sweden)

    Kifaya Azmi

    Full Text Available BACKGROUND/OBJECTIVES: Palestinian strains of L.tropica characterized by multilocus enzyme electrophoresis (MLEE fall into two zymodemes, either MON-137 or MON-307. METHODOLOGY/PRINCIPLE FINDINGS: Assays employing PCR and subsequent RFLP were applied to sequences found in the Hexokinase (HK gene, an enzyme that is not used in MLEE, and the Phosphoglucomutase (PGM gene, an enzyme that is used for MLEE, to see if they would facilitate consigning local strains of L.tropica to either zymodeme MON-137 or zymodeme MON-307. Following amplification and subsequent double digestion with the restriction endonucleases MboI and HaeIII, variation in the restriction patterns of the sequence from the HK gene distinguished strains of L.tropica, L.major and L.infantum and also exposed two genotypes (G among the strains of L.tropica: HK-LtG1, associated with strains of L.tropica of the zymodemes MON-137 and MON-265, and HK-LtG2, associated with strains of L.tropica of the zymodemes MON-307, MON-288, MON-275 and MON-54. Following amplification and subsequent digestion by the restriction endonuclease MboI, variation in the sequence from the PGM gene also exposed two genotypes among the strains of L.tropica: PGM-G1, associated only with strains of L.tropica of the zymodeme MON-137; and PGM-G2, associated with strains of L.tropica of the zymodemes MON-265, MON-307, MON-288, MON-275 and MON-54, and, also, with six strains of L.major, five of L.infantum and one of L.donovani. The use of the HK and PGM gene sequences enabled distinction the L.tropica strains of the zymodeme MON-137 from those of the zymodeme MON-265. This genotyping system 'correctly' identified reference strains of L.tropica of known zymodemal affiliation and also from clinical samples, with a level of sensitivity down to <1 fg in the case of the former and to 1 pg of DNA in the case of the latter. CONCLUSIONS/SIGNIFICANCE: Both assays proved useful for identifying leishmanial parasites in clinical

  5. Distribution of actinomycetes in oil contaminated ultisols of the Niger Delta (Nigeria)

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    The distribution of actinomycetes in oil contaminated sandy loam ultisols of the Niger Delta region of Nigeria was studied to aid in understanding the effect of hydrocarbons on indigenous microbial population in tropical soils. The average total counts of actinomycetes in all the oil samples analysed was 103 cfu/g. Higher counts of actinomycetes were observed during the dry season than during the wet season. The counts of hydrocarbonoclastic actinomycetes correlated positively with the total count of actinomycetes.The actinomycetes were generally restricted to the top soil(0-10 cm soil depth) although a seemingly deeper(down to 40 cm soil depth) distribution was noticed in the dry season. The isolates included oil degrading species of Actinoplanes, Norcadia,Streptomyces and Streptosporangium. Their high oil utilization ability indicates their positive potential and role in the bioremediation of oil-spilled soils.

  6. Competitive biosorption of thorium and uranium by actinomycetes

    International Nuclear Information System (INIS)

    The competitive biosorption of thorium and uranium by actinomycetes was examined. Of the actinomycetes tested, Streptomyces levoris showed the highest ability to sorb both thorium and uranium from aqueous systems. Thorium sorption was not affected by co-existed uranium, while uranium sorption was strongly hindered by co-existed thorium. The amounts of both thorium and uranium sorbed by Streptomyces levoris cells increased with an increase of the solution pH. Although the equilibrium isotherm of uranium biosorption is in similar manner as that of thorium biosorption, uranium was sorbed much faster than thorium. Biosorption isotherm of each metal ion could be well fitted by Langmuir isotherm taking the ionic charge of metal ions into account. The Langmuir isotherm for binary system did not explain completely the competitive biosorption of thorium and uranium by Streptomyces levoris. However, the results suggested that the ion species of both metals in the cells should be Th(OH)22+ and UO22+, respectively. (author)

  7. Ecological features of rare actinomycetes genera in soils of Azerbaijan

    Directory of Open Access Journals (Sweden)

    A. R. Abushova

    2010-01-01

    Full Text Available The results of the research of rare species of actinomycetes in some soils of Azerbaijan were studied. On the selective media the representatives of Streptomyces, Streptosporangium, Micromonospora, Actinomadura, Microbispora, Saccharopolyspora and Saccharomonospora were revealed. Species of Streptomyces and Micromonospora dominate in mountain-wood ecosystems (60 %.. It was established that among streptomyces species of Cinereus section of Violaceus series; Helvolo-Flavus sections of Helvolus series, Roseus sections of Fuscus series; Azureus sections of Coerulescens series. It was established that amount of termotolerant actinomycetes in the investigated desert soils of Azerbaijan depends on the incubation temperature. The species of Streptomyces, Micromonospora, Saccharopolyspora and Actinomadura genera were isolated from desert soils of Azerbaijan.

  8. Actinomycetes for Marine Drug Discovery Isolated from Mangrove Soils and Plants in China

    OpenAIRE

    Hong, Kui; Gao, An-Hui; Xie, Qing-Yi; Gao, Hao Gao; Zhuang, Ling; Lin, Hai-Peng; Yu, Hai-Ping; Li, Jia; Yao, Xin-Sheng; Goodfellow, Michael; Ruan, Ji-Sheng

    2009-01-01

    The mangrove ecosystem is a largely unexplored source for actinomycetes with the potential to produce biologically active secondary metabolites. Consequently, we set out to isolate, characterize and screen actinomycetes from soil and plant material collected from eight mangrove sites in China. Over 2,000 actinomycetes were isolated and of these approximately 20%, 5%, and 10% inhibited the growth of Human Colon Tumor 116 cells, Candida albicans and Staphylococcus aureus, respectively, while 3%...

  9. Isolation and characterization of marine-derived actinomycetes with cytotoxic activity from the Red Sea coast

    OpenAIRE

    Mohamed Saleh Abdelfattah; Mohammed Ismail Youssef Elmallah; Usama Wahid Hawas; Lamia Taha Abou El-Kassema; Mennat Allah Gamal Eid

    2016-01-01

    Objective: To isolate and evaluate the cytotoxic activity of different actinomycetes species isolated from the Red Sea coast in Sharm el-Sheikh, Egypt. Methods: Forty actinomycetes strains were isolated from different sediments and seawater samples collected from the Red Sea coast in Egypt. Actinomycetes were recognized by morphological and microscopic examinations. Cell viability and cytotoxicity induced by the crude extracts on breast cancer cell lines MDA-MB-231 were assessed using meth...

  10. 放线菌分类研究进展%Advance on taxonomy of actinomycetes

    Institute of Scientific and Technical Information of China (English)

    刘燕娟; 李婵; 周倩

    2009-01-01

    The status of actinomycetes classification study of the evolution and classification methods were overviewed, as well as domestic actinomycetes classification status,and actinomycetes classification was forecasted.%综述了放线菌分类地位的演变和分类研究方法,以及国内放线菌分类现状,并对放线菌分类研究进行了展望.

  11. Lactose-reversible coaggregation between oral actinomycetes and Streptococcus sanguis.

    OpenAIRE

    Kolenbrander, P. E.; Williams, B L

    1981-01-01

    Freshly isolated strains of oral actinomycetes were obtained from human dental plaque and were tested for the ability to coaggregate with common laboratory stock strains of Streptococcus sanguis. Strains belonging to the genera Actinomyces, Arachnia, Bifidobacterium, and Bacterionema were isolated. Only members of the genus Actinomyces coaggregated with the streptococci, and only Actinomyces viscosus and Actinomyces naeslundii exhibited lactose-reversible interactions. A total of 61 strains, ...

  12. Degradation of Lignin-Related Compounds by Actinomycetes

    OpenAIRE

    Ball, A.S.; Betts, W. B.; McCarthy, A.J.

    1989-01-01

    Evidence for activity against the lignin fraction of straw was produced for a range of actinomycete strains. Decolorization of the polymeric dye Poly R and oxidation of veratryl alcohol, indicators of ligninolytic activity in white rot fungi, and utilization of fractionated Kraft lignin and low-molecular-weight methoxylated aromatic compounds were the criteria used. The relationships between these activities and the solubilization of native lignin are discussed.

  13. Ecological features of rare actinomycetes genera in soils of Azerbaijan

    OpenAIRE

    A. R. Abushova; S. A. Gasanova; M. A. Kasimzade

    2010-01-01

    The results of the research of rare species of actinomycetes in some soils of Azerbaijan were studied. On the selective media the representatives of Streptomyces, Streptosporangium, Micromonospora, Actinomadura, Microbispora, Saccharopolyspora and Saccharomonospora were revealed. Species of Streptomyces and Micromonospora dominate in mountain-wood ecosystems (60 %.). It was established that among streptomyces species of Cinereus section of Violaceus series; Helvolo-Flavus sections of Helvolus...

  14. ISOLATION AND ANTIMICROBIAL AND DEGRADATIVE POTENTIAL OF ACTINOMYCETES

    Directory of Open Access Journals (Sweden)

    Padma Singh* and Vani Sharma

    2013-02-01

    Full Text Available Problem Statement: Does the soil Actinomycetes have Antimicrobial and Petrol degradation potential? It is an intriguing question. Actinomycetes are continues to be a subject of study with reference to their Antimicrobial and degradative potential. However studies have been done is limited. Our object was to study its Antimicrobial activity in wide spectrum and to study its degradation potential on Petrol. Approach: In this study we have isolated total 5 Actinomycetes from the Ganga river bed. All the isolates later purified and identified by various Morphological and Biochemical test. Here Nocardia was subjected to antimicrobial test against Streptococcus, Mucor and Aspergillus and it was also subjected to degradation test against Petrol. Result: The 5 isolates are Streptomyces, Micromonospora, Micromono sporangium and 2 different strain of Nocardia (Na1 and Na2. The 2 strains of Nocardia are active against Streptococcus (Na1 29.6mm, Na2 26.6mm, Mucor (Na1 12.5mm, Na2 22.5mm and Aspergillus (Na1 50%, Na2 60%. They also degrade Petrol very effectively, decrease in total organic carbon of the medium was observed during the degradation of petrol. Conclusion: Our observation provides us with evidence that these agents can be used for the production of new antibiotics and as the agent to control the environment pollution.

  15. CRISPR-Cas9 Based Engineering of Actinomycetal Genomes.

    Science.gov (United States)

    Tong, Yaojun; Charusanti, Pep; Zhang, Lixin; Weber, Tilmann; Lee, Sang Yup

    2015-09-18

    Bacteria of the order Actinomycetales are one of the most important sources of pharmacologically active and industrially relevant secondary metabolites. Unfortunately, many of them are still recalcitrant to genetic manipulation, which is a bottleneck for systematic metabolic engineering. To facilitate the genetic manipulation of actinomycetes, we developed a highly efficient CRISPR-Cas9 system to delete gene(s) or gene cluster(s), implement precise gene replacements, and reversibly control gene expression in actinomycetes. We demonstrate our system by targeting two genes, actIORF1 (SCO5087) and actVB (SCO5092), from the actinorhodin biosynthetic gene cluster in Streptomyces coelicolor A3(2). Our CRISPR-Cas9 system successfully inactivated the targeted genes. When no templates for homology-directed repair (HDR) were present, the site-specific DNA double-strand breaks (DSBs) introduced by Cas9 were repaired through the error-prone nonhomologous end joining (NHEJ) pathway, resulting in a library of deletions with variable sizes around the targeted sequence. If templates for HDR were provided at the same time, precise deletions of the targeted gene were observed with near 100% frequency. Moreover, we developed a system to efficiently and reversibly control expression of target genes, deemed CRISPRi, based on a catalytically dead variant of Cas9 (dCas9). The CRISPR-Cas9 based system described here comprises a powerful and broadly applicable set of tools to manipulate actinomycetal genomes.

  16. [Isolation and antimicrobial activities of actinomycetes from vermicompost].

    Science.gov (United States)

    Wang, Xue-jun; Yan, Shuang-lin; Min, Chang-li; Yang, Yan

    2015-02-01

    In this paper, actinomycetes were isolated from vermicompost by tablet coating method. Antimicrobial activities of actinomycetes were measured by the agar block method. Strains with high activity were identified based on morphology and biochemical characteristics, as well as 16S rDNA gene sequence analysis. The results showed that 26 strains of actinomycetes were isolated, 16 of them had antimicrobial activities to the test strains which accounts for 61.54% of all strains. Among the 16 strains, the strain QYF12 and QYF22 had higher antimicrobial activity to Micrococcus luteus, with a formed inhibition zone of 27 mm and 31 mm, respectively. While the strain QYF26 had higher antimicrobial activity to Bacillus subtilis, and the inhibition zone diameter was 21 mm. Based on the identification of strains with high activity, the strain QYF12 was identified as Streptomyces chartreusis, the strain QYF22 was S. ossamyceticus and the strain QYF26 was S. gancidicus. This study provided a theoretical basis for further separate antibacterial product used for biological control. PMID:26137678

  17. Actinomycetes in Karstic caves of northern Spain (Altamira and Tito Bustillo).

    Science.gov (United States)

    Groth, I; Vettermann, R; Schuetze, B; Schumann, P; Saiz-Jimenez, C

    1999-05-01

    A variety of isolation procedures were carried out to study the involvement of bacteria in the colonisation and biodeterioration of Spanish caves with paleolithic rock art (Altamira and Tito Bustillo). The applied techniques mainly aimed to isolate heterotrophic bacteria such as streptomycetes, nocardioform and coryneform actinomycetes, and other gram-positive and gram-negative bacteria. The results demonstrated that actinomycetes were the most abundant gram-positive bacteria in the caves. Actinomycetes revealed a great taxonomic diversity with the predominant isolates belonging to the genus Streptomyces. Members of the genera Nocardia, Rhodococcus, Nocardioides, Amycolatopsis, Saccharothrix, Brevibacterium, Microbacterium, and coccoid actinomycetes (family Micrococcaceae) were also found. PMID:10353805

  18. Airway inflammation among compost workers exposed to actinomycetes spores

    Directory of Open Access Journals (Sweden)

    Kari Kulvik Heldal

    2015-05-01

    Full Text Available Objectives. To study the associations between exposure to bioaerosols and work-related symptoms, lung function and biomarkers of airway inflammation in compost workers. Materials and method. Personal full-shift exposure measurements were performed on 47 workers employed at five windrow plants (n=20 and five reactor plants (n=27. Samples were analyzed for endotoxins, bacteria, fungal and actinomycetes spores. Health examinations were performed on workers and 37 controls before and after work on the day exposure was measured. The examinations included symptoms recorded by questionnaire, lung function by spirometry and nasal dimensions by acoustic rhinometry (AR. The pneumoproteins CC16, SP-D and SP-A were measured in a blood sample drawn at the end of the day. Results. The levels of endotoxins (median 3 EU/m[sup]3[/sup] , range 0–730 EU/m[sup]3[/sup] and actinomycetes spores (median 0.2 × 10[sup]6[/sup] spores/m[sup]3[/sup] , range 0–590 × 10[sup]6[/sup] spores/m[sup]3[/sup] were significantly higher in reactor plants compared to windrow plants. However, windrow composting workers reported more symptoms than reactor composting workers, probably due to use of respiratory protection. Exposure-response relationships between actinomycetes spores exposure and respiratory effects, found as cough and nose irritation during a shift, was significantly increased (OR 4.3, 95% CI 1.1–16, OR 6.1, 95% CI 1.5–25, respectively, p<0.05 among workers exposed to 0.02–0.3 × 10[sup]6[/sup] actinomycetes spores/m 3 , and FEV1/FVC% decreased cross shift (b=–3.2, SE=1.5%, p<0.01. Effects were weaker in the highest exposed group, but these workers used respiratory protection, frequently limiting their actual exposure. No relationships were found between exposure and pneumoprotein concentrations. Conclusions. The major agent in the aerosol generated at compost plants was actinomycetes spores which was associated with work related cough symptoms and work

  19. First report on naturalLeishmania infection ofPhlebotomus sergenti due Leishmania tropica by high resolution melting curve method in South-eastern Iran

    Institute of Scientific and Technical Information of China (English)

    Aghaei Afshar A; Rassi Y; Sharifi I; Vatandoost H; Mollaie HR; Oshaghi MA; Abai MR; Rafizadeh S

    2014-01-01

    Objective:To identify the Leishmaniaspecies in infected sand flies byReal-timePCR coupled withHRM analysis.Methods:Real-timePCR coupled withHRM analysis targeting the first internal transcribed spacer(ITS1) of nuclear ribosomalDNA as the genetic marker was used to identify and distinguish Leishmania species in sand flies specimens.Results:Three out of115 females ofPhlebotomus sergenti(P. sergenti)(2.6%) were positive toLeishmania tropica(L. tropica). Conclusions:This is the first report onP. sergenti as the main and proven vector of anthroponitic cutaneous leishmaniasis inDehbakriCounty usingReal-timePCR coupled withHRM analysis. This method is rapid, sensitive and specific for diagnosing of parasites in infectedSand flies and ideal for large scale genotyping projects.

  20. Actinomycete integrative and conjugative pMEA-like elements of Amycolatopsis and Saccharopolyspora decoded

    NARCIS (Netherlands)

    Poele, Evelien M. Te; Samborskyy, Markiyan; Oliynyk, Markiyan; Leadlay, Peter F.; Bolhuis, Henk; Dijkhuizen, Lubbert

    2008-01-01

    Actinomycete integrative and conjugative elements (AICEs) are present in diverse genera of the actinomycetes, the most important bacterial producers of bioactive secondary metabolites. Comparison of pMEA100 of Amycolatopsis mediterranei, pMEA300 of Amycolatopsis methanolica and pSE211 of Saccharopol

  1. Influence of Xenobiotic Substances on Actinomycete Comunities in Soil

    Directory of Open Access Journals (Sweden)

    Marioara Nicoleta Filimon

    2012-10-01

    Full Text Available Sulfonylurea herbicides are frequently used in agricultural crops even if they determine quantitative and qualitativechanges in soil microbial communities. In this study it was used increasing doses of two sulfonylurea herbicides,tribenuron-methyl and nicosulfuron, in order to establish their effect on actinomyces communities from soil underlaboratory conditions. Using nutritive gelose with soil extract and Gause medium the main species of actinomyceswere identified: Streptomyces albus, Streptomyces aureus and Streptomyces chrysomallus. Streptomyces albus is themost abundant species, which could indicate a resistance to used herbicides. Sulfonylurea herbicides, tribenuronmethyland nicosulfuron, point out a lower value, inhibiting the actinomycete communities from soil.

  2. Solid lipid nanoparticle loaded with paromomycin: in vivo efficacy against Leishmania tropica infection in BALB/c mice model.

    Science.gov (United States)

    Heidari-Kharaji, Maryam; Taheri, Tahereh; Doroud, Delaram; Habibzadeh, Sima; Rafati, Sima

    2016-08-01

    Leishmaniasis is a parasitic disease transmitted through the bite of an infected phlebotomine sand fly and caused by protozoan parasites of the genus Leishmania. There is no available vaccine for leishmaniasis in human, and the current chemotherapy approaches are hampered by different clinical problems. Most of available drugs are confined to a limited number of toxic chemical compounds, which some parasite strains have evolved drug resistance against. Hence, drug discovery and production of a new anti leishmanial compound is essential. One promising strategy is using the nanoparticle delivery systems with the aim of accelerating the efficacy of the available treatments. In the present study, paromomycin sulfate (PM) was formulated in solid lipid nanoparticles (SLN) and the in vivo efficacy was investigated against Leishmania tropica in BALB/c mice model. To do so, the increase in footpad thickness was measured and real-time PCR was performed to quantify the parasite load after infectious challenge. The level of nitric oxide and cytokines including interleukin-4 (IL-4) and gamma interferon (IFN -γ) were assessed. Altogether, the results show that PM loaded into SLN is significantly more effective than PM alone in inhibiting the parasite propagation and switching towards Th1 response. PMID:26960322

  3. Prophylactic immunization against experimental leishmaniasis. III. Protection against fatal Leishmania tropica infection induced by irradiated promastigotes involves Lyt-1/sup +/2/sup -/ T cells that do not mediate cutaneous DTH

    Energy Technology Data Exchange (ETDEWEB)

    Liew, F.Y.; Howard, J.G.; Hale, C.

    1984-01-01

    Protective immunity against fatal L. tropica infection in genetically vulnerable BALB/c mice can be induced by prophylactic immunization with irradiated promastigotes even when heat-killed. Such immunity is adoptively transferable transiently into intact or durably into sub-lethally irradiated (200 or 550 rad) syngeneic recipients by splenic T but not B cells. The effector T cells are of the Lyt-1/sup +/2/sup -/ phenotype, devoid of demonstrable cytotoxic activity. The immune splenic T cell population expresses specific helper activity for antibody synthesis. A causal role for helper T cells in this capacity, however, seems unlikely, because it was shown that antibody does not determine the protective immunity against L. tropica. The immunized donors show no detectable cutaneous DTH or its early memory recall in response to live or killed promastigotes or a soluble L. tropica antigen preparation. Spleen, lymph node, and peritoneal exudate cells from protectively immunized donors similarly fail to transfer DTH locally or systemically. These cells also lack demonstrable suppressive activity against the expression or induction of DTH to L. tropica. Thus, protection against L. tropica induced by prophylactic i.v. immunization with irradiated promastigotes appears to be conferred by Lyt-1/sup +/2/sup -/ T cells that are distinguishable from T cells mediating either both DTH and T help, or cytotoxicity.

  4. Therapeutic Potential of Biologically Reduced Silver Nanoparticles from Actinomycete Cultures

    Directory of Open Access Journals (Sweden)

    M. K. Sukanya

    2013-01-01

    Full Text Available Silver nanoparticles are applied in nanomedicine from time immemorial and are still used as powerful antibiotic and anti-inflammatory agents. Antibiotics produced by actinomycetes are popular in almost all the therapeutic measures, and this study has proven that these microbes are also helpful in the biosynthesis of silver nanoparticles with good surface and size characteristics. Silver can be synthesized by various chemical methodologies, and most of them have turned to be toxic. This study has been successful in isolating the microbes from polluted environment, and subjecting them to the reduction of silver nanoparticles, characterizing the nanoparticles by UV spectrophotometry and transmission electron microscopy. The nanoparticles produced were tested for their antimicrobial property, and the zone of inhibition was greater than those produced by their chemically synthesized counterparts. Actinomycetes, helpful in bioremediating heavy metals, are useful for the production of metallic nanoparticles. The biosynthesized silver nanoparticles loaded with antibiotics prove to be better in killing the pathogens and have opened up new areas for developing nanobiotechnological research based on microbial applications.

  5. New Dimensions of Research on Actinomycetes: Quest for Next Generation Antibiotics.

    Science.gov (United States)

    Jose, Polpass Arul; Jha, Bhavanath

    2016-01-01

    Starting with the discovery of streptomycin, the promise of natural products research on actinomycetes has been captivating researchers and offered an array of life-saving antibiotics. However, most of the actinomycetes have received a little attention of researchers beyond isolation and activity screening. Noticeable gaps in genomic information and associated biosynthetic potential of actinomycetes are mainly the reasons for this situation, which has led to a decline in the discovery rate of novel antibiotics. Recent insights gained from genome mining have revealed a massive existence of previously unrecognized biosynthetic potential in actinomycetes. Successive developments in next-generation sequencing, genome editing, analytical separation and high-resolution spectroscopic methods have reinvigorated interest on such actinomycetes and opened new avenues for the discovery of natural and natural-inspired antibiotics. This article describes the new dimensions that have driven the ongoing resurgence of research on actinomycetes with historical background since the commencement in 1940, for the attention of worldwide researchers. Coupled with increasing advancement in molecular and analytical tools and techniques, the discovery of next-generation antibiotics could be possible by revisiting the untapped potential of actinomycetes from different natural sources. PMID:27594853

  6. Diversity and Antagonistic Activity of Actinomycete Strains From Myristica Swamp Soils Against Human Pathogens

    Directory of Open Access Journals (Sweden)

    Varghese Rlnoy

    2014-05-01

    Full Text Available Under the present investigation Actinomycetes were isolated from the soils of Myristica swamps of southern Western Ghats and the antagonistic activity against different human bacterial pathogens was evaluated. Results of the present study revealed that Actinomycetes population in the soils of Myristica swamp was spatially and seasonally varied. Actinomycetes load was varied from 24×104 to 71×103, from 129×103 to 40×103 and from 31×104 to 84×103 in post monsoon, monsoon and pre monsoon respectively. A total of 23 Actinomycetes strains belonging to six genera were isolated from swamp soils. Identification of the isolates showed that most of the isolates belonged to the genus Streptomyces (11, followed by Nocardia (6, Micromonospora (3, Pseudonocardia (1, Streptosporangium (1, and Nocardiopsis (1. Antagonistic studies revealed that 91.3% of Actinomycete isolates were active against one or more tested pathogens, of that 56.52% exhibited activity against Gram negative and 86.95% showed activity against Gram positive bacteria. 39.13% isolates were active against all the bacterial pathogens selected and its inhibition zone diameter was also high. 69.5% of Actinomycetes were exhibited antibacterial activity against Listeria followed by Bacillus cereus (65.21%, Staphylococcus (60.86%, Vibrio cholera (52.17%, Salmonella (52.17% and E. coli (39.13%. The results indicate that the Myristica swamp soils of Southern Western Ghats might be a remarkable reserve of Actinomycetes with potential antagonistic activity.

  7. New Dimensions of Research on Actinomycetes: Quest for Next Generation Antibiotics

    Directory of Open Access Journals (Sweden)

    Polpass Arul Jose

    2016-08-01

    Full Text Available Starting with the discovery of streptomycin, the promise of natural products research on actinomycetes has been captivat¬ing researchers and offered an array of life-saving antibiotics. However, most of the actinomycetes have received a little attention of researchers beyond isolation and activity screening. Noticeable gaps in genomic information and associated biosynthetic potential of actinomycetes are mainly the reasons for this situation, which has led to a decline in the discovery rate of novel antibiotics. Recent insights gained from genome mining have revealed a massive existence of previously unrecognized biosynthetic potential in actinomycetes. Successive developments in next-generation sequencing, genome editing, analytical separation and high-resolution spectroscopic methods have reinvigorated interest on such actinomycetes and opened new avenues for the discovery of natural and natural-inspired antibiotics. This article describes the new dimensions that have driven the ongoing resurgence of research on actinomycetes with historical background since the commencement in 1940, for the attention of worldwide researchers. Coupled with increasing advancement in molecular and analytical tools and techniques, the discovery of next-generation antibiotics could be possible by revisiting the untapped potential of actinomycetes from different natural sources.

  8. Terrestrial actinomycetes from diverse locations of Uttarakhnad, India: Isolation and screening for their antibacterial activity.

    Directory of Open Access Journals (Sweden)

    Vijay Kumar

    2013-09-01

    Full Text Available Uttarakhand region is less explored, but possess a great biodiversity. This diversity can be explored for isolation and characterization of new actinomycetes strains for seeking antimicrobial molecules. It can therefore be predicted that novel bioactive metabolite producing actinomycetes can be discovered to combat multidrug resistant bacterial pathogens.Variations in the viable count of actinomycetes were accessed in different altitudes. Actinomycetes were isolated, indentified and screened for their antibacterial activity.The highest viable counts of actinomycetes were recorded in valleys followed by mid hills and high hills. A total of 512 actinomycetes were isolated which were found to belong the 14 different genera of actinomycetes. Mainly the genus Streptomyces was dominant in all the soil samples. Out of 512 isolates recovered, 23.44% exhibited antibacterial activity against one or more tested bacterial pathogens. Of these 56.67% showed activity against Gram-positive bacteria, 26.67% against Gram-negative bacteria while 16.67% showed broad spectrum activity. Isolate DV1S and GR9a-5 showed highest antibacterial properties against several multi-drug resistant bacterial pathogens and were identified using polyphasic approach. DV1S and GR9a-5 were found to be most closely related with S. massasporeus NBRC 12796(T and Nocardia nova JCM 6044(T respectively.The results of this study strongly support the idea that the viable count of actinomycetes varied greatly with altitude. The actinomycetes species isolated from valleys, mid hills and high hills possess significant capacity to produce compounds which are active against several drug resistant bacterial pathogens.

  9. New Benzoxazine Secondary Metabolites from an Arctic Actinomycete

    Directory of Open Access Journals (Sweden)

    Kyuho Moon

    2014-04-01

    Full Text Available Two new secondary metabolites, arcticoside (1 and C-1027 chromophore-V (2, were isolated along with C-1027 chromophore-III and fijiolides A and B (3–5 from a culture of an Arctic marine actinomycete Streptomyces strain. The chemical structures of 1 and 2 were elucidated through NMR, mass, UV, and IR spectroscopy. The hexose moieties in 1 were determined to be d-glucose from a combination of acid hydrolysis, derivatization, and gas chromatographic analyses. Arcticoside (1 and C-1027 chromophore-V (2, which have a benzoxazine ring, inhibited Candida albicans isocitrate lyase. Chromophore-V (2 exhibited significant cytotoxicity against breast carcinoma MDA-MB231 cells and colorectal carcinoma cells (line HCT-116, with IC50 values of 0.9 and 2.7 μM, respectively.

  10. Isolation and identification of actinomycetes from a compost-amended soil with potential as biocontrol agents.

    Science.gov (United States)

    Cuesta, Gonzalo; García-de-la-Fuente, Rosana; Abad, Manuel; Fornes, Fernando

    2012-03-01

    The search for new biocontrol strategies to inhibit the growth of phytopathogenic microorganisms has become widely widespread due to environmental concerns. Among actinomycetes, Streptomyces species have been extensively studied since they have been recognized as important sources of antibiotics. Actinomycete strains were isolated from a calcareous soil, 2 two-phase olive mill waste ('alperujo') composts, and the compost-amended soil by using selective media, and they were then co-cultured with 5 phytopathogenic fungi and 1 bacterium to perform an in vitro antagonism assay. Forty-nine actinomycete strains were isolated, 12 of them showing a great antagonistic activity towards the phytopathogenic microorganisms tested. Isolated strains were identified by 16S rDNA sequence analysis and phenotypic procedures. Eleven isolates concerned the genus Streptomyces and 1 actinomycete with chitinolytic activity belonged to the genus Lechevalieria. PMID:21190787

  11. Metabolic engineering of antibiotic factories: New tools for antibiotic production in actinomycetes

    DEFF Research Database (Denmark)

    Weber, Tilmann; Charusanti, Pep; Musiol-Kroll, Ewa Maria;

    2015-01-01

    Actinomycetes are excellent sources for novel bioactive compounds, which serve as potential drug candidates for antibiotics development. While industrial efforts to find and develop novel antimicrobials have been severely reduced during the past two decades, the increasing threat of multidrug...

  12. Mutational analysis of primary alcohol metabolism in the methylotrophic actinomycete Amycolatopsis methanolica

    NARCIS (Netherlands)

    Hektor, Harm J.; Dijkhuizen, Lubbert

    1996-01-01

    Mutants of the methylotrophic actinomycete Amycolatopsis methanolica unable to grow on methanol as carbon source were isolated and characterized. Mutants specifically affected in methanol utilization were deficient in formaldehyde assimilation. Mutants blocked in the first step of primary alcohol ox

  13. Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea.

    Science.gov (United States)

    Sreevidya, M; Gopalakrishnan, S; Kudapa, H; Varshney, R K

    2016-01-01

    The main objective of the present study was to isolate and characterize actinomycetes for their plant growth-promotion in chickpea. A total of 89 actinomycetes were screened for their antagonism against fungal pathogens of chickpea by dual culture and metabolite production assays. Four most promising actinomycetes were evaluated for their physiological and plant growth-promotion properties under in vitro and in vivo conditions. All the isolates exhibited good growth at temperatures from 20°C to 40°C, pH range of 7-11 and NaCl concentrations up to 8%. These were also found highly tolerant to Bavistin, slightly tolerant to Thiram and Captan (except VAI-7 and VAI-40) but susceptible to Benlate and Ridomil at field application levels and were found to produce siderophore, cellulase, lipase, protease, chitinase (except VAI-40), hydrocyanic acid (except VAI-7 and VAI-40), indole acetic acid and β-1,3-glucanase. When the four actinomycetes were evaluated for their plant growth-promotion properties under field conditions on chickpea, all exhibited increase in nodule number, shoot weight and yield. The actinomycetes treated plots enhanced total N, available P and organic C over the un-inoculated control. The scanning electron microscope studies exhibited extensive colonization by actinomycetes on the root surface of chickpea. The expression profiles for indole acetic acid, siderophore and β-1,3-glucanase genes exhibited up-regulation for all three traits and in all four isolates. The actinomycetes were identified as Streptomyces but different species in the 16S rDNA analysis. It was concluded that the selected actinomycetes have good plant growth-promotion and biocontrol potentials on chickpea. PMID:26887230

  14. Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea

    Directory of Open Access Journals (Sweden)

    M. Sreevidya

    2016-03-01

    Full Text Available Abstract The main objective of the present study was to isolate and characterize actinomycetes for their plant growth-promotion in chickpea. A total of 89 actinomycetes were screened for their antagonism against fungal pathogens of chickpea by dual culture and metabolite production assays. Four most promising actinomycetes were evaluated for their physiological and plant growth-promotion properties under in vitro and in vivo conditions. All the isolates exhibited good growth at temperatures from 20 °C to 40 °C, pH range of 7–11 and NaCl concentrations up to 8%. These were also found highly tolerant to Bavistin, slightly tolerant to Thiram and Captan (except VAI-7 and VAI-40 but susceptible to Benlate and Ridomil at field application levels and were found to produce siderophore, cellulase, lipase, protease, chitinase (except VAI-40, hydrocyanic acid (except VAI-7 and VAI-40, indole acetic acid and β-1,3-glucanase. When the four actinomycetes were evaluated for their plant growth-promotion properties under field conditions on chickpea, all exhibited increase in nodule number, shoot weight and yield. The actinomycetes treated plots enhanced total N, available P and organic C over the un-inoculated control. The scanning electron microscope studies exhibited extensive colonization by actinomycetes on the root surface of chickpea. The expression profiles for indole acetic acid, siderophore and β-1,3-glucanase genes exhibited up-regulation for all three traits and in all four isolates. The actinomycetes were identified as Streptomyces but different species in the 16S rDNA analysis. It was concluded that the selected actinomycetes have good plant growth-promotion and biocontrol potentials on chickpea.

  15. Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea.

    Science.gov (United States)

    Sreevidya, M; Gopalakrishnan, S; Kudapa, H; Varshney, R K

    2016-01-01

    The main objective of the present study was to isolate and characterize actinomycetes for their plant growth-promotion in chickpea. A total of 89 actinomycetes were screened for their antagonism against fungal pathogens of chickpea by dual culture and metabolite production assays. Four most promising actinomycetes were evaluated for their physiological and plant growth-promotion properties under in vitro and in vivo conditions. All the isolates exhibited good growth at temperatures from 20°C to 40°C, pH range of 7-11 and NaCl concentrations up to 8%. These were also found highly tolerant to Bavistin, slightly tolerant to Thiram and Captan (except VAI-7 and VAI-40) but susceptible to Benlate and Ridomil at field application levels and were found to produce siderophore, cellulase, lipase, protease, chitinase (except VAI-40), hydrocyanic acid (except VAI-7 and VAI-40), indole acetic acid and β-1,3-glucanase. When the four actinomycetes were evaluated for their plant growth-promotion properties under field conditions on chickpea, all exhibited increase in nodule number, shoot weight and yield. The actinomycetes treated plots enhanced total N, available P and organic C over the un-inoculated control. The scanning electron microscope studies exhibited extensive colonization by actinomycetes on the root surface of chickpea. The expression profiles for indole acetic acid, siderophore and β-1,3-glucanase genes exhibited up-regulation for all three traits and in all four isolates. The actinomycetes were identified as Streptomyces but different species in the 16S rDNA analysis. It was concluded that the selected actinomycetes have good plant growth-promotion and biocontrol potentials on chickpea.

  16. Occurrence of Rhodococcus coprophilus and associated actinomycetes in feces, sewage, and freshwater.

    OpenAIRE

    Mara, D. D.; Oragui, J I

    1981-01-01

    Freshwater, sewage, and fecal samples from various sources were examined for Rhodococcus coprophilus, associated actinomycetes, Escherichia coli, and fecal streptococci. Rhodococcus coprophilus was isolated consistently from feces of farm animals, poultry reared in proximity to farm animals, freshwater, and wastewater polluted with animal fecal wastes. It was not isolated from samples of human feces. The ratio of R. coprophilus total actinomycetes was higher in feces from cattle, sheep, ducks...

  17. Isolation and characterization of actinomycete antagonists of a fungal root pathogen.

    Science.gov (United States)

    Crawford, D L; Lynch, J M; Whipps, J M; Ousley, M A

    1993-11-01

    By use of selective media, 267 actinomycete strains were isolated from four rhizosphere-associated and four non-rhizosphere-associated British soils. Organic media with low nutrient concentrations were found to be best for isolating diverse actinomycetes while avoiding contamination and overgrowth of isolation media by eubacteria and fungi. While all isolates grew well at pHs 6.5 to 8.0, a few were unable to grow at pH 6.0 and a significant number failed to grow at pH 5.5. Eighty-two selected isolates were screened for in vitro antagonism towards Pythium ultimum by use of a Difco cornmeal agar assay procedure. Five isolates were very strong antagonists of the fungus, four were strong antagonists, and ten others were weakly antagonistic. The remaining isolates showed no antagonism by this assay. Additional studies showed that several of the P. ultimum antagonists also strongly inhibited growth of other root-pathogenic fungi. Twelve isolates showing antifungal activity in the in vitro assay were also tested for their effects on the germination and short-term growth of lettuce plants in glasshouse pot studies in the absence of pathogens. None of the actinomycetes prevented seed germination, although half of the isolates retarded seed germination and outgrowth of the plants by 1 to 3 days. During 18-day growth experiments, biomass yields of some actinomycete-inoculated plants were reduced in comparison with untreated control plants, although all plants appeared healthy and well rooted. None of the actinomycetes significantly enhanced plant growth over these short-term experiments. For some, but not all, actinomycetes, some correlations between delayed seed germination and reduced 18-day plant biomass yields were seen. For others, plant biomass yields were not reduced despite an actinomycete-associated delay in seed germination and plant outgrowth. Preliminary glasshouse experiments indicated that some of the actinomycetes protect germinating lettuce seeds against

  18. Isolation of endophytic actinomycetes from roots and leaves of maize (Zea mays L.)

    OpenAIRE

    Araújo, Janete M.; da Silva, Adilson C.; João L. Azevedo

    2000-01-01

    Actinomycetes were isolated from surface sterilized leaves and roots of maize. A total of 53 isolates were obtained, 31 of them from leaves and 22 from roots. The genus Microbispora was the most frequently found followed by the genera Streptomyces and Streptosporangium. From the isolated actinomycetes, 43.4% showed antimicrobial activity against one or more tested bacteria and yeast.Microrganismos endofíticos são frequentemente encontrados no interior de plantas cultivadas. Embora vários tipo...

  19. Actinomycetes from Western Ghats of Tamil Nadu with its antimicrobial properties

    Institute of Scientific and Technical Information of China (English)

    Valan Arasu M; Ignacimuthu S; Agastian P

    2012-01-01

    Objective: To isolate the actinomycetes from Western Ghats of Tamil Nadu with its antimicrobial properties. Methods: Starch casein agar medium supplemented with actidione and nalidixic acid was used to isolate actinomycetes from Western Ghates region of Kanyakumari, Thirunelveli, Dindigul and Nilgiri districts. Modified nutrient medium was used as the base for screening actinomycetes against pathogenic Gram positive, Gram negative and filamentous fungi. Results:Among 367 actinomycetes; 17.71% showed activity against both bacteria and fungi. The highest antibacterial activity was observed against B. subtilis, 140 isolates (38.1%), S. aureus 128 (34.9%);S. epidermidis 123 (33.5%); P. aeruginosa 105 (28.6%); K. pneumoniae 88 (24%); Xanthomonas sp 62 (16.9%). Less number of actinomycetes showed activity against Erwinia, S. typhi, V. fischeri andP. vulgaris. Hundred and three isolates showed activity against B. cinerea and A. niger. Twenty five isolates revealed activity against T. simii. Conclusions: Present investigation concludes that Western Ghats region of Tamil Nadu is the potential place for actinomycetes diversity. Further studying about these medically important strains from this region can be useful in identification of valuable bio-molecules.

  20. Enrichment Method for the Isolation of Bioactive Actinomycetes From Mangrove Sediments of Andaman Islands, India

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    Baskaran, R.

    2011-01-01

    Full Text Available Various pre-treatment methods and three different media were employed for the isolation of bioactive actinomycetes from mangrove sediments of Andaman and Nicobar Islands, India. Sediments from four different sites of mangrove forest were collected and pre-treated by dry heat method, and the media were supplemented with cycloheximide 80 µg/mL and nalidixic acid 75 µg/mL. The mean actinomycetes population density in sediment samples were recorded as 22 CFU-10^-6/gm in KUA medium followed by 12 CFU-10^-6/gm in AIA medium and 8 CFU-10^-6/gm in SCA medium. A total of 42 actinomycetes were isolated, and all the isolates were evaluated for their antibacterial activity against pathogenic bacteria on two different media. Among 42 isolates tested, 22 species were found to be antibacterial metabolite producer against test bacteria namely, Staphylococcus aureus, Bacillus subtilis, Salmonella typhi and Klebsiella pneumoniae. Particularly, the actinomycete strains such as A101, A102, A107, A116, A121, A125, A130, F101, F102, F104, F106, De101 and De102 significantly inhibited the growth of all bacteria which were tested. Of these strains, A107 was identified as Streptomyces spp. This strain had the maximum activity against all used pathogens on both medium. Hence, the isolation, characterization and studies of secondary metabolites of actinomycetes from mangrove sediments in Andaman and Nicobar Island could be a pathway for discovery of antibiotics from marine actinomycetes.

  1. Seroprevalence of Leishmania infection and molecular detection of Leishmania tropica and Leishmania infantum in stray cats of İzmir, Turkey.

    Science.gov (United States)

    Can, Hüseyin; Döşkaya, Mert; Özdemir, H Gökhan; Şahar, Esra Atalay; Karakavuk, Muhammet; Pektaş, Bayram; Karakuş, Mehmet; Töz, Seray; Caner, Ayşe; Döşkaya, Aysu Değirmenci; İz, Sultan Gülce; Özbel, Yusuf; Gürüz, Yüksel

    2016-08-01

    Leishmaniasis caused by more than 20 species of genus Leishmania is transmitted by the bite of infected phlebotomine sand flies. The studies on Leishmania infection in cats is very few in Turkey and therefore we aimed to screen stray cats living in city of İzmir located in western Turkey using nested PCR targeting kinetoplast DNA and serological techniques (ELISA and IFA). Leishmania DNA positive samples were also studied by ITS1 real time PCR. Whole blood and serum samples were obtained from stray cats (n: 1101) living in different counties of İzmir. In serological assays, a serum sample was considered positive in 1:40 dilution in IFA and for ELISA a serum sample was accepted positive when the absorbance value (AV) exceeded the mean AV + Standard Deviation (SD) of the negative control serum samples. According to the results, the seropositivity rates were 10.8% (119/1101) and 15.2% (167/1101) by in house ELISA and IFA, respectively. Among serology coherent samples, the seropositivity rate was 11.1% (116/1047) as detected by both assays after discordant samples (n: 54) were discarded. Of the 1101 stray cats, six (0.54%) were positive by nested PCR while only one of these six samples was positive by ITS1 real time PCR. During PCR, three controls designated as Leishmania infantum, Leishmania tropica, and Leishmania major were used for species identification. According to nested PCR results, L. tropica was identified in two cats (no.76 and 95). In another cat (no. 269), there were two bands in which one of them was well-matched with L. infantum and the other band had ∼850 bp size which does not match with any controls. Remaining three cats (no. 86, 514, and 622) also had the ∼850 bp atypical band size. ITS1 real time PCR detected L. tropica in only one cat (no. 622) which showed an atypical band size in nested PCR. These results indicated that three cats with only one atypical band (no. 86, 514, and 622) and the cat with mixed infection (no. 269) were

  2. Transformation of 2,4,6-trinitrotoluene (TNT) by actinomycetes isolated from TNT-contaminated and uncontaminated environments.

    OpenAIRE

    Pasti-Grigsby, M B; Lewis, T A; Crawford, D L; Crawford, R L

    1996-01-01

    Actinomycete strains isolated from 2,4,6-trinitrotoluene (TNT)-contaminated and uncontaminated environments were compared for TNT tolerance and abilities to transform TNT. Regardless of previous TNT exposure history, no significant differences in TNT tolerance were seen among strains. Selected strains did not significantly mineralize [14C]TNT. The actinomycetes did, however, transform TNT into reduced intermediates. The data indicate that, in actinomycete-rich aerobic environments like compos...

  3. Comparative Proteomic Profiling of Leishmania tropica: Investiga¬tion of a Case Infected with Simultaneous Cutaneous and Viscero¬tropic Leishmaniasis by 2-Dimentional Electrophoresis and Mass Spectrometry

    Directory of Open Access Journals (Sweden)

    Homa HAJJARAN

    2015-10-01

    Full Text Available Background: Viscerotropic leishmaniasis caused by Leishmania tropica poses a significant prob­lem in the diagnosis and treatment management. Since differential gene expression is more im­portant in outcome of the infection, we employed proteomic approach to identify potential pro­teins involved in visceralization of L. tropica.Methods: The proteomes profiling of L. tropica isolated from cutaneous and visceral tissues of one host were compared by 2-DE/MS proteomics study. Moreover, the transcript level of some identified proteins was confirmed using real-time RT-PCR.Results: Of the 700 protein spots that were detected reproducibly on each gel, 135 were found to be differentially expressed (P≤ 0.05. Most of responsive proteins in visceral isolate changed in less abundant compared to cutaneous isolate. Among differentially expressed proteins, 56 proteins were confidently identified and classified according to the biological process. The larg­est groups consist of proteins involved in carbohydrate metabolism and protein synthesis. Most of the identified proteins, which implicated in energy metabolism, cell signaling and virulence were down-regulated, whereas some proteins that have a role in protein folding, antioxidant defense and proteolysis were up-regulated in visceral form. Moreover, the transcript level of some identified proteins such as co-chaperon was confirmed using real-time RT-PCR.Conclusion: L. tropica probably uses different mechanisms for survival and multiplication in viscera to establish viscerotropic leishmaniasis. The current study provides some clues into the mechanisms underlying the dissemination of L. tropica.

  4. Characterization of a chitinase from the cellulolytic actinomycete Thermobifida fusca.

    Science.gov (United States)

    Gaber, Yasser; Mekasha, Sophanit; Vaaje-Kolstad, Gustav; Eijsink, Vincent G H; Fraaije, Marco W

    2016-09-01

    Thermobifida fusca is a well-known cellulose-degrading actinomycete, which produces various glycoside hydrolases for this purpose. However, despite the presence of putative chitinase genes in its genome, T. fusca has not been reported to grow on chitin as sole carbon source. In this study, a gene encoding a putative membrane-anchored GH18 chitinase (Tfu0868) from T. fusca has been cloned and overexpressed in Escherichia coli. The protein was produced as SUMO fusion protein and, upon removal of the SUMO domain, soluble pure TfChi18A was obtained with yields typically amounting to 150mg per litre of culture. The enzyme was found to be relatively thermostable (apparent Tm=57.5°C) but not particularly thermoactive, the optimum temperature being 40-45°C. TfChi18A bound to α- and β-chitin and degraded both these substrates. Interestingly, activity towards colloidal chitin was minimal and in this case, substrate inhibition was observed. TfChi18A also cleaved soluble chito-oligosaccharides and showed a clear preference for substrates having five sugars or more. While these results show that TfChi18A is a catalytically competent GH18 chitinase, the observed catalytic rates were low compared to those of well-studied GH18 chitinases. This suggests that TfChi18A is not a true chitinase and not likely to endow T. fusca with the ability to grow on chitin. PMID:27108953

  5. Investigation of antileishmanial activities of Tio2@Ag nanoparticles on biological properties of L. tropica and L. infantum parasites, in vitro.

    Science.gov (United States)

    Allahverdiyev, Adil M; Abamor, Emrah Sefik; Bagirova, Melahat; Baydar, Serap Yesilkir; Ates, Sezen Canim; Kaya, Figen; Kaya, Cengiz; Rafailovich, Miriam

    2013-09-01

    Leishmaniasis is a public health problem which is caused by protozoon parasites belonging to Leishmania species. The disease threatens approximately 350 million people in 98 countries all over the world. Cutaneous Leishmaniasis (CL) and Visceral Leishmaniasis (VL) are the mostly commonly seen forms of the disease. Treatment of the disease has remained insufficient since current antileishmanial drugs have several disadvantages such as toxicity, costliness and drug-resistance. Therefore, there is an immediate need to search for new antileishmanial compounds. TiO2@Ag nanoparticles (TiAg-Nps) have been demonstrated as promising antimicrobial agents since they provide inhibition of several types of bacteria. The basic antimicrobial mechanism of TiAg-Nps is the generation of reactive oxygen species (ROS). Even though Leishmania parasites are sensitive to ROS, there is no study in literature indicating antileishmanial activities of TiAg-Nps. Herein, in this study, TiAg-Nps are shown to possess antileishmanial effects on Leishmania tropica and Leishmania infantum parasites by inhibiting their biological properties such as viability, metabolic activity, and survival within host cells both in the dark and under visible light. The results indicate that TiAg-Nps decreased viability values of L. tropica, and L. infantum promastigotes 3- and 10-fold, respectively, in the dark, while these rates diminished approximately 20-fold for each species in the presence of visible light, in contrast to control. On the other hand, non-visible light-exposed TiAg-Nps inhibited survival of amastigotes nearly 2- and 2.5-fold; while visible light-exposed TiAg-Nps inhibited 4- and 4.5-fold for L. tropica and L. infantum parasites, respectively. Consequently, it was determined that non-visible light-exposed TiAg-Nps were more effective against L. infantum parasites while visible light-exposed TiAg-Nps exhibited nearly the same antileishmanial effect against both species. Therefore, we think that a

  6. Actinomycetes from red sea sponges: Sources for chemical and phylogenetic diversity

    KAUST Repository

    Abdelmohsen, Usama Ramadan

    2014-05-12

    The diversity of actinomycetes associated with marine sponges collected off Fsar Reef (Saudi Arabia) was investigated in the present study. Forty-seven actinomycetes were cultivated and phylogenetically identified based on 16S rRNA gene sequencing and were assigned to 10 different actinomycete genera. Eight putatively novel species belonging to genera Kocuria, Mycobacterium, Nocardia, and Rhodococcus were identified based on sequence similarity values below 98.2% to other 16S rRNA gene sequences available in the NCBI database. PCR-based screening for biosynthetic genes including type I and type II polyketide synthases (PKS-I, PKS-II) as well as nonribosomal peptide synthetases (NRPS) showed that 20 actinomycete isolates encoded each at least one type of biosynthetic gene. The organic extracts of nine isolates displayed bioactivity against at least one of the test pathogens, which were Gram-positive and Gram-negative bacteria, fungi, human parasites, as well as in a West Nile Virus protease enzymatic assay. These results emphasize that marine sponges are a prolific resource for novel bioactive actinomycetes with potential for drug discovery. 2014 by the authors; licensee MDPI.

  7. Screening of Actinomycetes From Lipar Area of Oman Sea to Investigate the Antibacterial Compounds

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    Shams

    2015-02-01

    Full Text Available Background Actinomycetes are one of the most important sources for the production of antibacterial compounds. Marine environments, due to their unique characteristics, are considered a good option to search for bacteria with the capability of producing antimicrobial compounds. Objectives The purpose of this study was to isolate the actinomycetes producing antibacterial compounds. Materials and Methods A total of 35 actinomycetes were isolated from Oman Sea (Lipar Area. To investigate antibacterial activity, the isolated actinomycetes were assessed against reference and pathogenic bacteria, including Staphylococcus epidermidis, Staphylococcu intermedius, Staphylococcu chromogenes, Staphylococcu saprophyticus, Bacillus cereus and methicillin-resistance Staphylococcu aureus, Pseudomonas, Listeria, Klebsiella, Salmonella, Acinetobacter, and Escherichia coli O157:H7, using the cross streak method. Results Based on the morphological characterization, 35 isolated cases belonged to actinomycetes and %94 of them had the ability to produce antibacterial compounds. In the cross streak method, most of the isolated bacteria have antibacterial activity against reference S. aureus among Gram-positive bacteria and Acinetobacter among Gram-negative bacteria. Inhibition zone diameters were measured between 2-25 and 1-20 mm for Gram-positive and -negative bacteria, receptivity. Conclusions Preliminary results indicate that the native Iranian Actinobacteria could be considered a suitable option for screening of the new antibacterial compounds. Molecular research and antibacterial compound extraction against the aforementioned pathogenic strains are also being conducted.

  8. lsolation and characterization of marine-derived actinomycetes with cytotoxic activity from the Red Sea coast

    Institute of Scientific and Technical Information of China (English)

    Mohamed Saleh Abdelfattah; Usama Wahid Hawas; Lamia Taha Abou El-Kassema; Mennat Allah Gamal Eid

    2016-01-01

    Objective: To isolate and evaluate the cytotoxic activity of different actinomycetes species isolated from the Red Sea coast in Sharm el-Sheikh, Egypt. Methods: Forty actinomycetes strains were isolated from different sediments and seawater samples collected from the Red Sea coast in Egypt. Actinomycetes were recognized by morphological and microscopic examinations. Cell viability and cyto-toxicity induced by the crude extracts on breast cancer cell lines MDA-MB-231 were assessed using methylene blue assay. The strains with promising cytotoxic activity were identified by sequencing and amplifying the 16S rRNA genes. The antibacterial activities of the crude extracts were performed using Kirby-Bauer disc diffusion method. Results: The results indicated that five ethyl acetate extracts exhibited cytotoxicity to-wards breast cancer cell lines MDA-MB-231. The highest cytotoxic activity was found for the ethyl acetate extracts of EGY2 and EGY39. The isolate EGY3 was identified as a new Streptomyces species, while the actinomycete EGY22 was found to be a member of the genus Nocardiopsis sp. The crude extract of the isolate EGY8 showed slightly high antimicrobial activity against different test microorganisms. Conclusions: The results of the present study reveal that marine sediments of the Red Sea are a potent source of novel species of actinomycetes. The isolates may be useful in discovery of novel bioactive compounds and an important step in the development of microbial natural product research.

  9. Actinomycetes from Red Sea Sponges: Sources for Chemical and Phylogenetic Diversity

    Directory of Open Access Journals (Sweden)

    Usama Ramadan Abdelmohsen

    2014-05-01

    Full Text Available The diversity of actinomycetes associated with marine sponges collected off Fsar Reef (Saudi Arabia was investigated in the present study. Forty-seven actinomycetes were cultivated and phylogenetically identified based on 16S rRNA gene sequencing and were assigned to 10 different actinomycete genera. Eight putatively novel species belonging to genera Kocuria, Mycobacterium, Nocardia, and Rhodococcus were identified based on sequence similarity values below 98.2% to other 16S rRNA gene sequences available in the NCBI database. PCR-based screening for biosynthetic genes including type I and type II polyketide synthases (PKS-I, PKS-II as well as nonribosomal peptide synthetases (NRPS showed that 20 actinomycete isolates encoded each at least one type of biosynthetic gene. The organic extracts of nine isolates displayed bioactivity against at least one of the test pathogens, which were Gram-positive and Gram-negative bacteria, fungi, human parasites, as well as in a West Nile Virus protease enzymatic assay. These results emphasize that marine sponges are a prolific resource for novel bioactive actinomycetes with potential for drug discovery.

  10. [Distribution and characteristics of soil antagonistic actinomycetes on northern slope of Taibai Mountain, Qinling].

    Science.gov (United States)

    Zhu, Wen-Jie; Xue, Quan-Hong; Cao, Yan-Ru; Xue, Lei; Shen, Guang-Hui; Lai, Hang-Xian

    2011-11-01

    Twelve representative soil samples were collected from different altitudes on the northern slope of Taibai Mountain to study the distribution and characteristics of soil antagonistic actinomyces by using agar block method. There existed a great deal of soil antagonistic actinomyces in the study area. Among the 141 actinomycete strains isolated, 116 strains (82.3%) showed antagonism toward 12 target bacteria or fungi. The antagonistic strains at altitudes 800-1845, 3488, 3655, and 3670 m occupied 73.7% -86.8%, 81.3%, 78.9% and 82.3% of the total, respectively. 42.1% of the strains at altitudes 1200-2300 m and > 3400 m showed strong and broad spectrum antagonistic activity, suggesting that there was a great potential for the isolation of actinomycete strains with strong anti-biotic capability at these altitudes. 24.1% of the antagonistic actinomycetes showed antagonism against Staphyloccocus aureu, and 2.4%, 6.9% and 11.2% of them showed activity toward Verticillium dahliae in cotton, Phytophthora sp. in strawberry and Neonectria radiciccla in ginseng, respectively. This study showed that the soil actinomycete antagonistic potentiality (SAAP) could be used as a quantitative indicator to evaluate the potential of antagonistic actinomycete resources in soil. PMID:22303680

  11. Amylase activity of aquatic actinomycetes isolated from the sediments of mangrove forests in south of Iran

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    Farshid Kafilzadeh

    2015-01-01

    Full Text Available In this study amylase producing actinomycetes were isolated from the sediments of mangrove forests in the south of Iran and the rate of amylase activity was measured. The samples of sediments were collected from one hundred different places in mangrove forests of the south of Iran. Collected samples were diluted then they were purified on the starch (casein agar culture and Woodruff. After that they were examined in terms of amylase production on agar–starch culture. The activity of the produced amylase by the isolated aquatic actinomycetes was measured by dinitrosalicylic acid (DNS method. The results showed that aquatic actinomycetes were isolated from 86 per 100 places in spring (86% and from 61 per 100 places in summer (61%. The highest rates of producing enzyme were related to isolated samples in spring (62.97 U/ml. Biochemical and Bergey’s book tests showed that the most isolated aquatic actinomycetes belonged to Streptomyces genus. As regards this, it is economical and easy to isolate the aquatic actinomycetes which produce amylase that is used in different industries in Iran from the sediments of mangrove forests of the south of Iran. So the isolated strains in this study can be suitable candidates for amylase production after genetic manipulation.

  12. SCREENING OF ANTIMICROBIAL ACTIVITY AND GENES CODING POLYKETIDE SYNTHETASE AND NONRIBOSOMAL PEPTIDE SYNTHETASE OF ACTINOMYCETE ISOLATES

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    Silvia Kovácsová

    2013-12-01

    Full Text Available The aim of this study was to observe antimicrobial activity using agar plate diffusion method and screening genes coding polyketide synthetase (PKS-I and nonribosomal peptide synthetase (NRPS from actinomycetes. A total of 105 actinomycete strains were isolated from arable soil. Antimicrobial activity was demonstrated at 54 strains against at least 1 of total 12 indicator organisms. Antifungal properties were recorded more often than antibacterial properties. The presence of PKS-I and NRPS genes were founded at 61 of total 105 strains. The number of strains with mentioned biosynthetic enzyme gene fragments matching the anticipated length were 19 (18% and 50 (47% respectively. Overall, five actinomycete strains carried all the biosynthetical genes, yet no antimicrobial activity was found against any of tested pathogens. On the other hand, twenty-one strains showed antimicrobial activity even though we were not able to amplify any of the PKS or NRPS genes from them. Combination of the two methods showed broad-spectrum antimicrobial activity of actinomycetes isolated from arable soil, which indicate that actinomycetes are valuable reservoirs of novel bioactive compounds.

  13. Isolation of actinomycetes from mangrove and estuarine sediments of Cochin and screening for antimicrobial activity

    Institute of Scientific and Technical Information of China (English)

    Emilda Rosmine

    2016-01-01

    Objective:To isolate and screen actinomycetes for antimicrobial activity from mangroves and estuarine soil samples of Cochin. Methods: In the present study, sediment samples collected from mangroves and various stations of Cochin estuary were pretreated and actinomycetes were isolated on different selective media. The isolates were screened for antibiotic activity by following disc diffusion assay (Kirby-Bauer method) against human pathogens, fish pathogens and Gram-positive bacteria. The isolates were identified based on their morphology. Results:Only 2 actinomycete isolates (ER7and ER10) of the 50 isolates screened had antimicrobial activities against one or more pathogens tested. ER7 isolate showed higher antimicrobial activity as compared to that of ER10 isolate. The maximum inhibition zone of crude extract from ER7 was 16.7 mm. The methanol extract of ER7 showed antimicrobial activity against all the pathogens tested with a maximum zone of 21.0 mm. The isolates with antimicrobial activity were found to belong to the genusStreptomyces. Conclusions:There is no significant report on bioactive actinomycetes from the present study areas. Potent antibiotics from the selected isolates could contribute to fight against several human and fish diseases. Further purification, structural elucidation and characterization are recommended to know the quality, novelty and commercial value of these antibiotics. Hence, the mangroves and estuary of Kochi show great promise for the discovery of bioactive actinomycetes.

  14. Phylogenetic characterization of culturable actinomycetes associated with the mucus of the coral Acropora digitifera from Gulf of Mannar.

    Science.gov (United States)

    Nithyanand, Paramasivam; Manju, Sivalingam; Karutha Pandian, Shunmugiah

    2011-01-01

    The marine environment is a virtually untapped source of novel actinomycete diversity and its metabolites. Investigating the diversity of actinomycetes in other marine macroorganisms, like seaweeds and sponges, have resulted in isolation of novel bioactive metabolites. Actinomycetes diversity associated with corals and their produced metabolites have not yet been explored. Hence, in this study we attempted to characterize the culturable actinomycetes population associated with the coral Acropora digitifera. Actinomycetes were isolated from the mucus of the coral wherein the actinomycetes count was much higher when compared with the surrounding seawater and sediment. Actinobacteria-specific 16S rRNA gene primers were used for identifying the isolates at the molecular level in addition to biochemical tests. Amplified ribosomal DNA restriction analysis using three restriction enzymes revealed several polymorphic groups within the isolates. Sequencing and blast analysis of the isolates revealed that some isolates had only 96.7% similarity with its nearest match in GenBank indicating that they may be novel isolates at the species level. The isolated actinomycetes exhibited good antibacterial activity against various human pathogens. This study offers for the first time a prelude about the unexplored culturable actinomycetes diversity associated with a scleractinian coral and their bioactive capabilities. PMID:21105906

  15. A Search and Improvement of Actinomycetes Strains by Gamma Radiation for Biological Control of Plant Pathogen

    International Nuclear Information System (INIS)

    Two hundred isolates of actinomycetes isolate from soil sample in Sakaerat Bioshere Reserve and Suwanvajokkasikit Field Corps Research Station were tested the ability of actinomycetes on chitinase production and inhibition on the growth of 3 phyto pathogenic fung: Fusarium sporotrichiodes, Rhizoctonia solani and Sclerotium rolfsii, It was found that 7 isolates showed good tendency to control the growth of phyto pathogenic fungi in the with and with chitin. To increase the ability on antifungal activity the select show were mutant using gamma irradiation of radiance 173 isolates of mutant actinomycetes we found that only 35 isolates showed higher in inhibitory effect on three phyto pathogenic fungi tested. three isolate. Three isolates of mutant strains, SJ9I-15, SG4I-17 and SG4I-38 and two isolates of wild type strain which are SJ9 and SG4 were selected for controlling phyto pathogenic fungi in the green house.

  16. A comparative study on selected marine actinomycetes from Pulicat, Muttukadu, and Ennore estuaries

    Institute of Scientific and Technical Information of China (English)

    SChacko Vijai Sharma; Ernest David

    2012-01-01

    Objective: To isolate and make a comparative study of marine sediments actinomycetes from Pulicat estuary, Muttukadu estuary and Ennore estuary, TamilNadu, India. Methods: A unique selective enrichment procedure has resulted in the isolation and identification a total of 304 actinomycetes colonies which were isolated from different stations of marine soil sediments in Pulicat estuary, Muttukadu estuary and Ennore estuary, TamilNadu, India. Results: Among them, 277 isolates were morphologically distinct on the basis of spore mass colour, aerial and substrate mycelium formation and production of diffusible pigment. The majority (60%; 162 isolates) were assigned to the genus Streptomyces. (35%; 104 isolates) were assigned to the genus Actinopolyspora, (5%; 11 isolates) were assigned to the genus Nocardiodes. Conclusions: The present study concluded that the physiological characteristics of actinomycetes Streptomyces, Actinopolyspora and Nocardiodes varied by available nutrients in the medium and the physical conditions.

  17. Exploration of Potential Actinomycetes from CIFOR Forest Origin as Antimicrobial, Antifungus, and Producing Extracellular Xylanase

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    Sipriyadi Sipriyadi

    2016-03-01

    Full Text Available This study aimed to isolate and explore the actinomycetes of CIFOR forest origin as an antimicrobial and antifungal agent, to produce an extracellular xylanase, and to identify isolates based on 16S rRNA gene sequences. Actinomycetes were isolated using Humic-acid Vitamin-B agar (HV media. Actinomycetes colonies that grow on the medium HV was subsequently purified by growing them on yeast malt agar (YMA media, then an antagonistic test of selected bacteria against Bacillus sp., Escherichia coli, Fusarium oxysporum, and Sclerotium sp was performed. Xylanase activity test was detected by observing a clear zone, followed by identification. Total of 35 isolates of actinomycetes isolated based on their colony morphology characteristics and diverse types of spore chains showed Streptomyces spp. of isolates CFR-06, CFR-15, CFR-17, CFR-18, and CFR-19 were able to inhibit the growth of Bacillus sp.. The highest inhibition zone has a diameter of 10.1 mm (isolate CFR-17. Isolates CFR-01 and CFR-15 were able to inhibit the growth of E. coli with the highest inhibition zone diameter of 5.1 mm (isolate CFR-15. Isolates CFR-29 and CFR-12 were able to inhibit the growth of F. oxysporum while isolate CFR-35 were able to inhibit the growth of Sclerotium sp.. Xylanase activity test showed that isolates CFR-12, CFR-20, CFR-22, CFR-24, CFR-25, CFR-30, CFR-33, CFR-34 have an ability to produce extracellular xylanase enzyme. Actinomycetes isolate (Xyl_22 as a potential xylanase enzyme producer was closely related with Streptomyces drozdowicii by the maximum similarity of 99%.How to CiteSipriyadi, S., Lestari, Y., Wahyudi, A., & Meryandini, A. (2016. Exploration Potential CIFOR Forest actinomycetes origin as Antimicrobial, Anti Fungus and Producing Enzymes Extracellular Xylanase. Biosaintifika: Journal of Biology & Biology Education, 8(1, 94-102.

  18. Antibacterial activity of actinomycetes isolated from different soil samples of Sheopur (A city of central India

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    Hotam S Chaudhary

    2013-01-01

    Full Text Available The main objective of the present study was isolation, purification, and characterization of actinomycetes from soil samples, having antimicrobial activity against 12 selected pathogenic strains. Soils samples were taken from different niche habitats of Sheopur district, Madhya Pradesh, India. These samples were serially diluted and plated on actinomycete isolation agar media. Potential colonies were screened, purified, and stored in glycerol stock. Isolates were morphologically and biochemically characterized. These isolates were subjected to extraction for production of the antibacterial compound. Antibacterial activity and Minimum Inhibitory Concentration (MIC of the purified extract of isolates were evaluated. Totally 31 actinomycete isolates were tested for antagonistic activity against 12 pathogenic microorganisms. Isolates AS14, AS27, and AS28 were highly active, while AS1 showed less activity against the pathogenic microorganisms. Isolate AS7 exhibited the highest antagonistic activity against Bacillus cereus (24 mm and AS16 showed the highest activity against Enterococcus faecalis (21 mm. MIC was also determined for actinomycete isolates against all the tested microorganisms. MIC of actinomycete isolates was found to be 2.5 mg/ml against Shigella dysenteriae, Vancomycin-resistant enterococci, and Klebsiella pneumoniae, and was 1.25 mg/ml for Staphylococcus saprophyticus, Streptococcus pyogenes, Staphylococcus epidermidis, Methicillin-resistant Staphylococcus, Bacillus cereus, Staphylococcus xylosus, Methicillin-resistant Staphylococcus aureus, Enterococcus faecalis, and Staphylococcus aureus. All actinomycetes isolates showed antibacterial activity against S. aureus, while they showed less activity against S. dysenteriae. These isolates had antibacterial activity and could be used in the development of new antibiotics for pharmaceutical or agricultural purposes.

  19. Isolation and Characterization of Actinomycete Antagonists of a Fungal Root Pathogen †

    OpenAIRE

    Crawford, Don L.; Lynch, James M.; Whipps, John M.; Ousley, Margaret A.

    1993-01-01

    By use of selective media, 267 actinomycete strains were isolated from four rhizosphere-associated and four non-rhizosphere-associated British soils. Organic media with low nutrient concentrations were found to be best for isolating diverse actinomycetes while avoiding contamination and overgrowth of isolation media by eubacteria and fungi. While all isolates grew well at pHs 6.5 to 8.0, a few were unable to grow at pH 6.0 and a significant number failed to grow at pH 5.5. Eighty-two selected...

  20. Actinomycetes bioactivos de sedimento marino de la costa central del Perú

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    Jorge León

    2013-04-01

    Full Text Available En el presente trabajo evaluamos la actividad antibacteriana y antifúngica de actinomycetes marinos sobre patógenos de origen clínico. Asimismo, fueron evaluadas la capacidad de producir enzimas extracelulares como carbohidrasas, lipasas y proteasas. Los Actinomycetes fueron aislados de sedimentos colectados entre setiembre a diciembre del 2005 de las Bahías de Ancón (Lima e Independencia (Ica de 34 y 100 m de profundidad. El aislamiento se realizó en Agar Caseína - Almidón (ACA y Agar Marino (AM con adición de Cicloheximide (10 μg/mL. Las evaluaciones antimicrobianas fueron realizadas frente a bacterias patógenas antibiótico-multirresistentes y hongos de origen clínico; en tanto, para evaluar su actividad multienzimática se utilizaron sustratos poliméricos diversos. Se aislaron un total de 62 actinomycetes, de los cuales 31 (50% mostraron actividad antibacteriana frente a Staphylococcus aureus, 36 (59% frente a Pseudomonas aeruginosa y 23 (37% a ambos patógenos. Las cepas de actinomycetes I-400A y M10-77 identificadas en cada caso como Streptomyces y Thermoactinomyces fueron las que exhibieron mayor actividad inhibitoria frente a P. aeruginosa y S. aureus respectivamente. Asimismo, 13 actinomycetes (20,97% mostraron actividad antifúngica frente a cultivos de Candida albicans cepa 1511 y 17 (27,42% frente a Candida albicans cepa 1511MIC; sin embargo, ningún actinomycete presentó actividad inhibitoria frente a Aspergillus niger, Aspergillus fumigatus y Trichophyton mentagrophytes. La mayoría de los actinomycetes mostraron tener actividad multienzimática capaz de hidrolizar compuestos poliméricos como el tween-80 (96%, la gelatina (95%, almidón (93%, lecitina (88% y la caseína (74%. Extractos del compuesto activo obtenidos de la cepa M10-77 con etil acetato rindieron notable actividad inhibitoria contra S. aureus. Se concluye que el sedimento marino es fuente de Actinomycetes con gran capacidad de producir sustancias

  1. Glucose metabolism in the antibiotic producing actinomycete Nonomuraea sp ATCC 39727

    DEFF Research Database (Denmark)

    Gunnarsson, Nina; Bruheim, Per; Nielsen, Jens

    2004-01-01

    The actinomycete Nonomuraea sp. ATCC 39727, producer of the glycopeptide A40926 that is used as precursor for the novel antibiotic dalbavancin, has an unusual carbon metabolism. Glucose is primarily metabolized via the Entner-Doudoroff (ED) pathway, although the energetically more favorable Embden...... - Meyerhof - Parnas (EMP) pathway is present in this organism. Moreover, Nonomuraea utilizes a PPi-dependent phosphofructokinase, an enzyme that has been connected with anaerobic metabolism in eukaryotes and higher plants, but recently has been recognized in several actinomycetes. In order to study its...

  2. Anthracimycin, a potent anthrax antibiotic from a marine-derived actinomycete.

    Science.gov (United States)

    Jang, Kyoung Hwa; Nam, Sang-Jip; Locke, Jeffrey B; Kauffman, Christopher A; Beatty, Deanna S; Paul, Lauren A; Fenical, William

    2013-07-22

    Licensed to kill: A new antibiotic, anthracimycin (see scheme), produced by a marine-derived actinomycete in saline culture, shows significant activity toward Bacillus anthracis, the bacterial pathogen responsible for anthrax infections. Chlorination of anthracimycin gives a dichloro derivative that retains activity against Gram-positive bacteria, such as anthrax, but also shows activity against selected Gram-negative bacteria. PMID:23776159

  3. Isolation and characterization of marine-derived actinomycetes with cytotoxic activity from the Red Sea coast

    Directory of Open Access Journals (Sweden)

    Mohamed Saleh Abdelfattah

    2016-08-01

    Conclusions: The results of the present study reveal that marine sediments of the Red Sea are a potent source of novel species of actinomycetes. The isolates may be useful in discovery of novel bioactive compounds and an important step in the development of microbial natural product research.

  4. Comparative genome-scale metabolic modeling of actinomycetes : The topology of essential core metabolism

    NARCIS (Netherlands)

    Alam, Mohammad Tauqeer; Medema, Marnix H.; Takano, Eriko; Breitling, Rainer; Gojobori, Takashi

    2011-01-01

    Actinomycetes are highly important bacteria. On one hand, some of them cause severe human and plant diseases, on the other hand, many species are known for their ability to produce antibiotics. Here we report the results of a comparative analysis of genome-scale metabolic models of 37 species of act

  5. Comparative genome-scale metabolic modeling of actinomycetes: the topology of essential core metabolism.

    NARCIS (Netherlands)

    Alam, M.T.; Medema, M.H.; Takano, E.; Breitling, R.

    2011-01-01

    Actinomycetes are highly important bacteria. On one hand, some of them cause severe human and plant diseases, on the other hand, many species are known for their ability to produce antibiotics. Here we report the results of a comparative analysis of genome-scale metabolic models of 37 species of act

  6. Isolation and identification of actinomycetes from a compost-amended soils biocontrol agents

    Energy Technology Data Exchange (ETDEWEB)

    Garcia de la Fuente, R.; Cuesta, G.; Fornes, F.; Abad, M.

    2009-07-01

    Compost capability to suppress soil-borne plant pathogens has become an interesting subject as a strategy for reducing the adverse effects of massive fungicides application in the environmental. In this context, actinomycetes have received considerable attention as biocontrol agents, particularly Streptomyces species. (Author)

  7. Characterization of cytotoxic compound from marine sediment derived actinomycete Streptomyces avidinii strain SU4

    Directory of Open Access Journals (Sweden)

    S Sudha

    2012-10-01

    Conclusion: This study clearly proves that the marine sediment derived actinomycetes with bioactive metabolites can be expected to provide high quality biological material for high throughout biochemical and anticancer screening programs. These results help us to conclude that the potential of using metabolic engineering and post genomic approaches to isolate more bioactive compounds and make their possible commercial application is not far off.

  8. A mixed community of actinomycetes produce multiple antibiotics for the fungus farming ant Acromyrmex octospinosus

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    Barke Jörg

    2010-08-01

    Full Text Available Abstract Background Attine ants live in an intensely studied tripartite mutualism with the fungus Leucoagaricus gongylophorus, which provides food to the ants, and with antibiotic-producing actinomycete bacteria. One hypothesis suggests that bacteria from the genus Pseudonocardia are the sole, co-evolved mutualists of attine ants and are transmitted vertically by the queens. A recent study identified a Pseudonocardia-produced antifungal, named dentigerumycin, associated with the lower attine Apterostigma dentigerum consistent with the idea that co-evolved Pseudonocardia make novel antibiotics. An alternative possibility is that attine ants sample actinomycete bacteria from the soil, selecting and maintaining those species that make useful antibiotics. Consistent with this idea, a Streptomyces species associated with the higher attine Acromyrmex octospinosus was recently shown to produce the well-known antifungal candicidin. Candicidin production is widespread in environmental isolates of Streptomyces, so this could either be an environmental contaminant or evidence of recruitment of useful actinomycetes from the environment. It should be noted that the two possibilities for actinomycete acquisition are not necessarily mutually exclusive. Results In order to test these possibilities we isolated bacteria from a geographically distinct population of A. octospinosus and identified a candicidin-producing Streptomyces species, which suggests that they are common mutualists of attine ants, most probably recruited from the environment. We also identified a Pseudonocardia species in the same ant colony that produces an unusual polyene antifungal, providing evidence for co-evolution of Pseudonocardia with A. octospinosus. Conclusions Our results show that a combination of co-evolution and environmental sampling results in the diversity of actinomycete symbionts and antibiotics associated with attine ants.

  9. Molecular, chemical and biological screening of soil actinomycete isolates in seeking bioactive peptide metabolites

    Directory of Open Access Journals (Sweden)

    Javad Hamedi

    2015-10-01

    Full Text Available Background and Objective: Due to the evolution of multidrug-resistant strains, screening of natural resources, especially actinomycetes, for new therapeutic agents discovery has become the interests of researchers. In this study, molecular, chemical and biological screening of soil actinomycetes was carried out in order to search for peptide-producing actinomycetes.Materials and Methods: 60 actinomycetes were isolated from soils of Iran. The isolates were subjected to molecular screening for detection NRPS (non-ribosomal peptide synthetases gene. Phylogenic identification of NRPS containing isolates was performed. Chemical screening of the crude extracts was performed using chlorine o-dianisidine as peptide detector reagent and bioactivity of peptide producing strains was determined by antimicrobial bioassay. High pressure liquid chromatography- mass spectrometry (HPLC-MS with UV-visible spectroscopy was performed for detection of the metabolite diversity in selected strain.Results: Amplified NRPS adenylation gene (700 bp was detected among 30 strains. Phylogenic identification of these isolates showed presence of rare actinomycetes genera among the isolates and 10 out of 30 strains were subjected to chemical screening. Nocardia sp. UTMC 751 showed antimicrobial activity against bacterial and fungal test pathogens. HPLC-MSand UV-visible spectroscopy results from the crude extract showed that this strain has probably the ability to produce new metabolites.Conclusion: By application of a combined approach, including molecular, chemical and bioactivity analysis, a promising strain of Nocardia sp. UTMC 751 was obtained. This strain had significant activity against Staphylococcus aureus and Pseudomonas aeruginosa. Strain Nocardia sp. UTMC 751 produce five unknown and most probably new metabolites with molecular weights of 274.2, 390.3, 415.3, 598.4 and 772.5. This strain had showed 99% similarity to Nocardia ignorata DSM 44496 T.

  10. Isolation and phylogenetic assignation of actinomycetes in the marine sediments from the Arctic Ocean

    Institute of Scientific and Technical Information of China (English)

    YU Yong; LI Huirong; ZENG Yinxin; CHEN Bo

    2005-01-01

    Actinomycetes in five marine sediments collected from the Arctic Ocean at depths of 43 to 3 050 m were cultivated using a variety of media. A total of 61 actinomycete colonies with substrate mycelia only were observed, and no colonies with aerial mycelia were observed under aerobic conditions at 15 ℃. From these colonies, 28 were selected to represent different morphological types.Denaturing gradient gel electrophoresis (DGGE) was used to check the purity of isolates and select representatives for subsequent sequencing. Phylogentic analyses based on nearly full-length 16S ribosomal RNA gene (rDNA) sequences indicated that the actinomycetes isolated were accommodated within genus Rhodococcus of family Nocardiaceae, genus Dietzia of family Dietziaceae,genera Janibacter and Terrabacter of family Instrasporangiaceae and genera Kocuria and Arthrobacter of family Micrococcaceae. One of the strains (P27-24) from the deep-sea sediment at depth of 3 050 m was found to be identical in 16S rDNA sequence(1474/1474)with the radiation-resistant Kocuria rosea ATCC 187T isolated from air. More than halfofthe isolates showed the similarities ranging from 99.5% to 99.9% in 16S rDNA sequence to dibenzofran-degrading, butyl 2-ethylhexanoate-hydrolysising and nitrile-metabolizing actinomycetes. All the strains isolated were psychrotolerant bacteria and grew better on the media prepared with natural seawater than on the media prepared with deionized water. Three of them (Dietzia sp. P27-10, Rhodococcus sp. S11-3 and Rhodococcus sp.P11-5)had an obligate growth requirement for salt, confirming that these strains are indigenous marine actinomycetes.

  11. ANALISIS KELAYAKAN TEKNIS DAN FINANSIAL DARI INVESTASI PENGADAAN TRAY DRYER BERBAHAN BAKAR BIOMASSA PADA USAHA ARANG TEMPURUNG KELAPA BERBASIS EKSPOR (Studi Kasus di Tropica Nucifera Industry – Yogyakarta

    Directory of Open Access Journals (Sweden)

    Fanny Widadie

    2013-11-01

    Full Text Available The purpose of the study is to assess the technical and financial feasibility of procurement investment Tray Dryer fueled biomass to operations of coconut shell charcoal briquette in PT. Tropica Nucifera Industry. The result showed that investment-Tray Dryer on cocnut shell charcoal briquette bussiness was highly feasibile both the technical and financial aspects. The technical aspect was seen that the quantity-production capabilities of coconut shell charcoal briquettes using a dryer-Tray Dryer could be increased 15 percent compared the previous consdition-used of solar energy. While the quality of the charcoal briquettes produced from Tray Dryer was a much butter quality, moisture content (6.39%; ash (2.65%; carbon-bound (85.83%, compared to using sunlight, water content (15.89; ash (2.57% and carbon-bound (77.32%.The financial aspects of procurement Tray Dryer investment that its value was more feasible than previous, nothing Tray Dryer. Coconut shell charcoal briquet enterprises without using Tray Dryer was feasible to be done with NPV 1,058,928.12, IRR 63%, Payback Period 1 year and 9 moths, Net B/C 2.25 and analysis of swicthcing value reached 20 percent. And after the business using Tray Drayer, the financial analysis was much more feasible with NPV 2,285,500,498.12, IRR 113%, Payback Period 11 months, Net B/C 3.5 and analysis of switching value reached 50 percent.

  12. In Vitro and In Vivo Plant Growth Promoting Activities and DNA Fingerprinting of Antagonistic Endophytic Actinomycetes Associates with Medicinal Plants

    OpenAIRE

    Ajit Kumar Passari; Vineet Kumar Mishra; Vijai Kumar Gupta; Mukesh Kumar Yadav; Ratul Saikia; Bhim Pratap Singh

    2015-01-01

    Endophytic actinomycetes have shown unique plant growth promoting as well as antagonistic activity against fungal phytopathogens. In the present study forty-two endophytic actinomycetes recovered from medicinal plants were evaluated for their antagonistic potential and plant growth-promoting abilities. Twenty-two isolates which showed the inhibitory activity against at least one pathogen were subsequently tested for their plant-growth promoting activities and were compared genotypically using...

  13. Presence, molecular characteristics and geosmin producing ability of actinomycetes isolated from South Korean terrestrial and aquatic environments.

    Science.gov (United States)

    Lee, Gyu-Cheol; Kim, Yun S; Kim, Min-Jeong; Oh, Sung-Ae; Choi, Ilhwan; Choi, Jaewon; Park, Jong-Geun; Chong, Chom-Kyu; Kim, Yong-Yeon; Lee, Kyeunghee; Lee, Chan Hee

    2011-01-01

    The unpleasant odor of drinking water is one of the major problems in many water utilities in the world. Actinomycetes have long been associated with odorous compounds. Considering the paucity of research on Actinomycetes producing odorous compounds in South Korea, presence of Actinomycetes, their molecular characteristics and ability to produce odorous compounds were investigated in this study. Findings confirmed the presence of Actinomycetes in surface soil, sediment, and water samples from four sites: two artificial lakes [Paldang and Cheongpyeong (CP)], and two streams [Gyeongan (GA) and Yangpyeong]. Surface soil and sediment from CP area had the greatest concentration of Actinomycetes (8.2 x 10(7) and 6.8 x 10(6) colony forming units (CFUs)/gram, dry weight, respectively). When water samples are considered, samples from GA had the highest concentration (1.9 x 10(2) CFU/mL). 16S rRNA sequencing and molecular phylogenetic analysis showed that Streptomyces was the dominant genus (64.1%). In addition, the isolated Actinomycetes synthesized 5.4 ng/L geosmin as demonstrated by thermal desorption unit-gas chromatograph/mass spectrometry analysis.

  14. Isolation and partial characterization of actinomycetes with antimicrobial activity against multidrug resistant bacteria

    Institute of Scientific and Technical Information of China (English)

    Smriti Singh; Pramod Kumar; N Gopalan; Bhuvnesh Shrivastava; RC Kuhad; Hotam Singh Chaudhary

    2012-01-01

    Objective: To isolate strains of Actinomycetes from different locations of Gwalior to evaluate its antimicrobial activity against multidrug resistant pathogenic strains. Method: Soil samples collected from different niche habitats of Gwalior were serially diluted and plated on selective media. Potential colonies were further purified and stored in agar slants and glycerol stocks. Isolates were biochemically characterized and purified isolates were test against pathogenic microorganisms for screening. Isolates with antagonistic properties were inoculated in production media and secondary metabolites or antimicrobial products were extracted. Result: The seven actinomycetes strains showing maximum antibacterial activity were isolated further characterized based on their colony characteristics and biochemical analyses. The isolates were screened for their secondary metabolites activity on three human pathogenic bacteria are Escherichia coli (E. coli), Methicillin-Resistant Staphylococcus aureus (S. aureus) and Vancomycin-Resistant Enterococci (VRE). Discussion: The strain MITS 1005 was found to be more active against the test bacteria.

  15. Inhibition of norsolorinic acid accumulation to Aspergillus parasiticus by marine actinomycetes

    Science.gov (United States)

    Yan, Peisheng; Shi, Cuijuan; Shen, Jihong; Wang, Kai; Gao, Xiujun; Li, Ping

    2014-11-01

    Thirty-six strains of marine actinomycetes were isolated from a sample of marine sediment collected from the Yellow Sea and evaluated in terms of their inhibitory activity on the growth of Aspergillus parasiticus and the production of norsolorinic acid using dual culture plate assay and agar diffusion methods. Among them, three strains showed strong antifungal activity and were subsequently identified as Streptomyces sp. by 16S rRNA gene sequencing analysis. The supernatant from the fermentation of the MA01 strain was extracted sequentially with chloroform and ethyl acetate, and the activities of the extracts were determined by tip culture assay. The assay results show that both extracts inhibited mycelium growth and toxin production, and the inhibitory activities of the extracts increased as their concentrations increased. The results of this study suggest that marine actinomycetes are biologically important for the control of mycotoxins, and that these bacteria could be used as novel biopesticides against mycotoxins.

  16. Mutational analysis of primary alcohol metabolism in the methylotrophic actinomycete Amycolatopsis methanolica

    OpenAIRE

    Hektor, Harm J.; Dijkhuizen, Lubbert

    1996-01-01

    Mutants of the methylotrophic actinomycete Amycolatopsis methanolica unable to grow on methanol as carbon source were isolated and characterized. Mutants specifically affected in methanol utilization were deficient in formaldehyde assimilation. Mutants blocked in the first step of primary alcohol oxidation (C1-C4) had lost activity of the tetrazolium-dependent alcohol dehydrogenase, a three-component enzyme complex. This complex, or individual components, thus play a crucial role in utilizati...

  17. Bioleaching of Rare Earth Elements and Uranium From Sinai Soil, Egypt Using Actinomycetes

    OpenAIRE

    Maha Amin Hewedy, Abeer Ahmed Rushdy, and Noha Mohammed Kamal

    2013-01-01

    The use of microorganisms in the recovery of Rare Earth Elements (REEs) and Uranium (U) from low grade ores provides an appropriate eco-friendly alternative to chemical methods used in extraction and/or removal of metals from soils, with a higher efficiency, less destruction to the environment, and lower cost from a commercial view especially given that high-grade mineral resources that can be used in the chemical extraction of metals are being depleted. The feasibility of using actinomycetes...

  18. Mesophilic Actinomycetes in the natural and reconstructed sand dune vegetation zones of Fraser Island, Australia.

    Science.gov (United States)

    Kurtböke, D I; Neller, R J; Bellgard, S E

    2007-08-01

    The natural coastal habitat of Fraser Island located in the State of Queensland, Australia, has been disturbed in the past for mining of the mineral sand ilmenite. Currently, there is no information available on whether these past mining disturbances have affected the distribution, diversity, and survival of beneficial soil microorganisms in the sand dunes of the island. This in turn could deleteriously affect the success of the natural regeneration, plant growth, and establishment on the sand dunes. To support ongoing restoration efforts at sites like these mesophilic actinomycetes were isolated using conventional techniques, with particular emphasis on the taxa previously reported to produce plant-growth-promoting substances and providing support to mycorrhizal fungi, were studied at disturbed sites and compared with natural sites. In the natural sites, foredunes contained higher densities of micromonosporae replaced by increasing numbers of streptomycete species in the successional dune and finally leading to complex actinomycete communities in the mature hind dunes. Whereas in the disturbed zones affected by previous mining activities, which are currently being rehabilitated, no culturable actinomycete communities were detected. These findings suggest that the paucity of beneficial microflora in the rehabilitated sand dunes may be limiting the successful colonization by pioneer plant species. Failure to establish a cover of plant species would result in the mature hind dune plants being exposed to harsh salt and climatic conditions. This could exacerbate the incidence of wind erosion, resulting in the destabilization of well-defined and vegetated successional dunal zones.

  19. Actinomycetes: A Repertory of Green Catalysts with a Potential Revenue Resource

    Directory of Open Access Journals (Sweden)

    Divya Prakash

    2013-01-01

    Full Text Available Biocatalysis, one of the oldest technologies, is becoming a favorable alternative to chemical processes and a vital part of green technology. It is an important revenue generating industry due to a global market projected at $7 billion in 2013 with a growth of 6.7% for enzymes alone. Some microbes are important sources of enzymes and are preferred over sources of plant and animal origin. As a result, more than 50% of the industrial enzymes are obtained from bacteria. The constant search for novel enzymes with robust characteristics has led to improvisations in the industrial processes, which is the key for profit growth. Actinomycetes constitute a significant component of the microbial population in most soils and can produce extracellular enzymes which can decompose various materials. Their enzymes are more attractive than enzymes from other sources because of their high stability and unusual substrate specificity. Actinomycetes found in extreme habitats produce novel enzymes with huge commercial potential. This review attempts to highlight the global importance of enzymes and extends to signify actinomycetes as promising harbingers of green technology.

  20. Actinomycetes: a repertory of green catalysts with a potential revenue resource.

    Science.gov (United States)

    Prakash, Divya; Nawani, Neelu; Prakash, Mansi; Bodas, Manish; Mandal, Abul; Khetmalas, Madhukar; Kapadnis, Balasaheb

    2013-01-01

    Biocatalysis, one of the oldest technologies, is becoming a favorable alternative to chemical processes and a vital part of green technology. It is an important revenue generating industry due to a global market projected at $7 billion in 2013 with a growth of 6.7% for enzymes alone. Some microbes are important sources of enzymes and are preferred over sources of plant and animal origin. As a result, more than 50% of the industrial enzymes are obtained from bacteria. The constant search for novel enzymes with robust characteristics has led to improvisations in the industrial processes, which is the key for profit growth. Actinomycetes constitute a significant component of the microbial population in most soils and can produce extracellular enzymes which can decompose various materials. Their enzymes are more attractive than enzymes from other sources because of their high stability and unusual substrate specificity. Actinomycetes found in extreme habitats produce novel enzymes with huge commercial potential. This review attempts to highlight the global importance of enzymes and extends to signify actinomycetes as promising harbingers of green technology.

  1. Changes in the structure of the rhizosphere complex of actinomycetes in the ontogenesis of winter rye

    Science.gov (United States)

    Shirokikh, I. G.; Merzaeva, O. V.; Zenova, G. M.

    2006-06-01

    Changes in the taxonomic structure of actinomycetes in the rhizosphere of winter rye ( Secale cereale L.) growing on acid soddy-podzolic soil were studied. During the first stages of ontogenesis of winter rye, the rhizosphere complex of mycelial prokaryotes was characterized by a relatively level generic structure (with respect to the indices of abundance and frequency of particular genera), low values of the species diversity, and low domination frequency of the species from the Streptomyces genus. The numbers and species diversity of the streptomycetes increased during the further growth of the winter rye, so that streptomycetes became a dominant group in the complex of the rhizosphere actinomycetes. According to the two-way ANOVA, the population density of the Micromonospora and the Streptosporangium genera in the rhizosphere was mainly dictated by the winter rye variety, whereas the population density of the streptomycetes depended on the particular stage of the winter rye development. The differences between the actinomycetal complexes characteristic of different varieties of winter rye at the early stages of its development was leveled by the end of the winter rye growth.

  2. Actinomycete complexes in soils of industrial and residential zones in the city of Kirov

    Science.gov (United States)

    Shirokikh, I. G.; Solov'eva, E. S.; Ashikhmina, T. Ya.

    2014-02-01

    The number, diversity, and structure of the actinomycetal complexes in the soils of the industrial and residential zones of the city of Kirov are considered. The total content of mobile cadmium, zinc, lead, iron, and nickel in the soils of the industrial biotopes was 1.8 and 6.0 times higher than their concentration in the soils of the residential and background zones, respectively. In the heavy metal (HM)-polluted soils, the share of actinomycetes in the total number of prokaryotes and the relative abundance of the micromono-spores in the actinomycetal complex were much higher and the species diversity of the streptomycetes was lower than these characteristics in the soils of the residential zone. The differences in the composition of the mycelial prokaryote complexes appear to be related to the selective resistance of some of their representatives to heavy metals. The possibility to select the strains resistant to HMs and suitable for use in the bioremediation of polluted soils is considered.

  3. Occupational allergic respiratory diseases in garbage workers: relevance of molds and actinomycetes.

    Science.gov (United States)

    Hagemeyer, O; Bünger, J; van Kampen, V; Raulf-Heimsoth, M; Drath, C; Merget, R; Brüning, Th; Broding, H C

    2013-01-01

    Exposures to molds and bacteria (especially actinomycetes) at workplaces are common in garbage workers, but allergic respiratory diseases due to these microorganisms have been described rarely. The aim of our study was a detailed analysis of mold or bacteria-associated occupational respiratory diseases in garbage workers. From 2002 to 2011 four cases of occupational respiratory diseases related to garbage handling were identified in our institute (IPA). Hypersensitivity pneumonitis (HP) was diagnosed in three subjects (cases 1-3, one smoker, two non-smokers), occupational asthma (OA) was diagnosed in one subject (case 4, smoker), but could not be excluded completely in case 2. Cases 1 and 2 worked in composting sites, while cases 3 and 4 worked in packaging recycling plants. Exposure periods were 2-4 years. Molds and actinomycetes were identified as allergens in all cases. Specific IgE antibodies to Aspergillus fumigatus were detected exclusively in case 4. Diagnoses of HP were essentially based on symptoms and the detection of specific IgG serum antibodies to molds and actinomycetes. OA was confirmed by bronchial provocation test with Aspergillus fumigatus in case 4. In conclusion, occupational HP and OA due to molds occur rarely in garbage workers. Technical prevention measures are insufficient and the diagnosis of HP is often inconclusive. Therefore, it is recommended to implement the full repertoire of diagnostic tools including bronchoalveolar lavage and high resolution computed tomography in the baseline examination. PMID:23835992

  4. Bioperspective of actinomycetes isolates from coastal soils: A new source of antimicrobial producers

    Directory of Open Access Journals (Sweden)

    Rattanaporn Srivibool

    2006-05-01

    Full Text Available Forty five soil samples were collected from four coastal islands on the east coast of Thailand: Chang, Hwai, Lao-yanai in Trat Province and Pai Islands in Chonburi Province. On 3 isolating media, Actinomycetes Isolation Agar, Starch Casein Agar and Glucose Asparagine Agar, 495 isolates of actinomycetes were found. Preliminary test to search for antimicrobial activity was done with Bacillus subtilis TISTR 008, Staphylococcus aureus TISTR 885, Staphylococus aureus TISTR 517 (ATCC 25923, Micrococcus luteus TISTR 884 and Pseudomonas aeruginosa TISTR 781 and Escherichia coli TISTR 887 (ATCC 25922. Fifty-eight actinomycetes were found to be antimicrobial-producing strains. From the morphological determination, cell wall diaminopimelic acid and sugars in whole-cell hydrolysate studies, among the 58 strains, Streptomyces sp. and Actinomadura sp. were the predominant genera. The other antibiotic active strains were Micromonospora sp., Microbispora sp., Nocardia sp., Pseudonocardia sp., Saccharomonospora sp., Streptoalloteichus sp. and Streptoverticillium sp. Most of them could inhibit gram-positive bacteria, especially M. luteus TISTR 884, and 8 strains (4 strains of Actinomadura, 2 strains of Micromonospora, 1 strain of Microbispora, and 1 strain of Streptomyces could inhibit both gram-positive and gram-negative bacteria.

  5. Anticancer property of sediment actinomycetes against MCF-7 and MDA-MB-231 cell lines

    Institute of Scientific and Technical Information of China (English)

    Ravikumar S; Fredimoses M; Gnanadesigan M

    2012-01-01

    Objective: To investigate the anticancer property of marine sediment actinomycetes against two different breast cancer cell lines. Methods:In vitro anticancer activity was carried out against breast (MCF-7 and MDA-MB-231) cancer cell lines. Partial sequences of the 16s rRNA gene, phylogenetic tree construction, multiple sequence analysis and secondary structure analysis were also carried out with the actinomycetes isolates. Results: Of the selected five actinomycete isolates, ACT01 and ACT02 showed the IC50 value with (10.13±0.92) and (22.34±5.82)μg/mL concentrations, respectively for MCF-7 cell line at 48 h, but ACT01 showed the minimum (18.54±2.49 μg/mL) level of IC50 value with MDA-MB-231 cell line. Further, the 16s rRNA partial sequences of ACT01, ACT02, ACT03, ACT04 and ACT05 isolates were also deposited in NCBI data bank with the accession numbers of GQ478246, GQ478247, GQ478248, GQ478249 and GQ478250, respectively. The phylogenetic tree analysis showed that, the isolates of ACT02 and ACT03 were represented in group I and III, respectively, but ACT01 and ACT02 were represented in group II. The multiple sequence alignment of the actinomycete isolates showed that, the maximum identical conserved regions were identified with the nucleotide regions of 125 to 221st base pairs, 65 to 119th base pairs and 55, 48 and 31st base pairs. Secondary structure prediction of the 16s rRNA showed that, the maximum free energy was consumed with ACT03 isolate (-45.4 kkal/mol) and the minimum free energy was consumed with ACT04 isolate (-57.6 kkal/mol). Conclusions:The actinomycete isolates of ACT01 and ACT02 (GQ478246 and GQ478247) which are isolated from sediment sample can be further used as anticancer agents against breast cancer cell lines.

  6. The biodegradation of layered silicates under the influence of cyanobacterial-actinomycetes associations

    Science.gov (United States)

    Ivanova, Ekaterina

    2013-04-01

    The weathering of sheet silicates is well known to be related to local and global geochemical cycles. Content and composition of clay minerals in soil determine the sorption properties of the soil horizons, water-holding capacity of the soil, stickiness, plasticity, etc. Microorganisms have a diverse range of mechanisms of minerals' structure transformation (acid- and alkali formation, biosorption, complexing, etc). One of the methods is an ability of exopolysaccharide-formation, in particular the formation of mucus, common to many bacteria, including cyanobacteria. Mucous covers cyanobacteria are the specific econiches for other bacteria, including actinomycetes. The objective was to analyze the structural changes of clay minerals under the influence of the cyanobacterial-actinomycetes associative growth. The objects of the study were: 1) the experimental symbiotic association, consisting of free-living heterocyst-formative cyanobacterium Anabaena variabilis Kutz. ATCC 294132 and actinomycete Streptomyces cyaneofuscatus FR837630, 2) rock samples obtained from the Museum of the Soil Science Department of the Lomonosov Moscow State University: kaolinite, consisting of kaolin (96%) Al4 (OH) 8 [Si4O10]; mixed with hydromica, chlorite and quartz; vermiculite, consisting of vermiculite (Ca, Mg, ...)*(Mg, Fe)3(OH)2[(Si, Al)4O10]*4H2O and trioctahedral mica (biotite). The mineralogical compositions of the rocks were determined by the universal X-ray Diffractometer Carl Zeiss Yena. The operationg regime was kept constant (30 kv, 40 mA). The cultivation of the association of actinomycete S. cyanoefuscatus and cyanobacterium A. variabilis caused a reduction in the intensity of kaolinite and hydromica reflexes. However, since both (mica and kaolinite) components have a rigid structure, the significant structural transformation of the minerals was not revealed. Another pattern was observed in the experiment, where the rock sample of vermiculite was used as the mineral

  7. Succession of Actinomycetes During Composting Proccess of Dairy-Farm Waste Investigated by Culture-Dependent and Independent Approaches

    Directory of Open Access Journals (Sweden)

    Mukhlissul Faatih1

    2015-11-01

    Full Text Available Mesophilic, thermophilic, and maturation phases were recognized in composting proccess. Temperaturechanges influence the microbial communities in compost within composting proccess. Actinomycetes account for alarger part of compost microbial population. The aim of this research was to study succession of actinomycetescommunity during composting of dairy-farm waste investigated by culture-dependent and independentapproaches.In culture-independent method, the succession of actinomycetes community was analyzed by nestedpolymerasechain reaction of ribosomal intergenic spacer (nested-PCR RISA using spesific primer F243 and primerR23S followed by a second PCR using primers F968 and R23S. In culture-dependent method actinomycetes fromcompost were isolated on selective media, starch-nitrate medium and humic-acid + vitamins medium. DNA ofactinomycetes was extracted and amplified by repetitive sequence-based PCR (rep-PCR using primer BOXA1R. Thebanding patterns were used to generate dendrograms by UPGMA clustering with NTSYS program. Microcosmcontaining sterile rice-straw and water which is inoculated with each actinomycetes isolates was used for examiningthe ability of each isolate in rice-straw degradation.The experiment results showed that succession of both bacteria and actinomycetes was occured withincomposting proccess of dairy-farm waste. Analysed by culture-independent method revealed that the highestcommunity of compost’s bacteria was on mesophilic, thermophilic, and maturation phases, respectively. WhereasPCR-nested RISA resulted the highest population of actinomycetes was on thermophilic, maturation, and mesophilicphases, respectively. By culture-dependent method was obtained 29 actinomycetes isolates from mesophilic phase,23 isolates from thermophilic phase, and 19 isolates from maturation phase. Genetic diversity analysis of the obtainedisolates showed the presence of phylogenetic grouping on each phase of composting proccess. This result

  8. SELEKSI DAN PEMANFAATAN ACTINOMYCETES SEBAGAI MIKROBA ANTAGONIS YANG RAMAH LINGKUNGAN TERHADAP Fusarium oxysporum f.sp. cubense SECARA IN VITRO

    Directory of Open Access Journals (Sweden)

    I MADE SUDARMA

    2015-06-01

    Full Text Available A total of 119 different actinomycete isolate were recovered from banana crop habitats with and without Fusarium wilt disease symptom. These were than assessed for their antagonist ability against Fusarium oxysporum £sp. cubense (Foe in vitro. Results indicated that four of all actinomycete isolate active against Foe. The four of actinomycete isolates were Streptomyces sp. l (AAo4, Streptomyces sp.2 (AAo32 , Streptomyces sp.3 (AAo33 and Streptomyces sp. 4 (AAo35. It was can inhibit the Foe mycelium growth, 79,63%, 72,22%, 78,89% and 72,22% respectively. After tested with the 3 times replication, the four Streptomyces spp. isolate effective to control the Foe that attack Bali banana cultivars, such as Susu, Saba, Raja and Ketip.

  9. Lignin-solubilizing ability of actinomycetes isolated from termite (Termitidae) gut

    International Nuclear Information System (INIS)

    The lignocellulose-degrading abilities of 11 novel actinomycete strains isolated from termite gut were determined and compared with that of the well-characterized actinomycete, Streptomyces viridosporus T7A. Lignocellulose bioconversion was followed by (i) monitoring the degradation of [14C]lignin- and [14C]cellulose-labeled phloem of Abies concolor to 14CO2 and 14C-labeled water-soluble products, (ii) determining lignocellulose, lignin, and carbohydrate losses resulting from growth on a lignocellulose substrate prepared from corn stalks (Zea mays), and (iii) quantifying production of a water-soluble lignin degradation intermediate (acid-precipitable polymeric lignin). Of the assays used, total lignocellulose weight loss was most useful in determining overall bioconversion ability but not in identifying the best lignin-solubilizing strains. A screening procedure based on 14CO2 evolution from [14C-lignin]lignocellulose combined with measurement of acid-precipitable polymeric lignin yield was the most effective in identifying lignin-solubilizing strains. For the termite gut strains, the pH of the medium showed no increase after 3 weeks of growth on lignocellulose. This is markedly different from the pattern observed with S. viridosporus T7A, which raises the medium pH considerably. Production of extracellular peroxidases by the 11 strains and S. viridosporus T7A was followed for 5 days in liquid cultures. On the basis of an increase of specific peroxidase activity in the presence of lignocellulose in the medium, the actinomycetes could be placed into the same three groups

  10. Isolation and characterization of potential antibiotic producing actinomycetes from water and sediments of Lake Tana, Ethiopia

    Institute of Scientific and Technical Information of China (English)

    Gebreselema Gebreyohannes; Feleke Moges; Samuel Sahile; Nagappan Raja

    2013-01-01

    To isolate, evaluate and characterize potential antibiotic producing actinomycetes from water and sediments of Lake Tana, Ethiopia. Methods: A total of 31 strains of actinomycetes were isolated and tested against Gram positive and Gram negative bacterial strains by primary screening. In the primary screening, 11 promising isolates were identified and subjected to solid state and submerged state fermentation methods to produce crude extracts. The fermented biomass was extracted by organic solvent extraction method and tested against bacterial strains by disc and agar well diffusion methods. The isolates were characterized by using morphological, physiological and biochemical methods. Results: The result obtained from agar well diffusion method was better than disc diffusion method. The crude extract showed higher inhibition zone against Gram positive bacteria than Gram negative bacteria. One-way analysis of variance confirmed most of the crude extracts were statistically significant at 95% confidence interval. The minimum inhibitory concentration and minimum bactericidal concentration of crude extracts were 1.65 mg/mL and 3.30 mg/mL against Staphylococcus aureus, and 1.84 mg/mL and 3.80 mg/mL against Escherichia coli respectively. The growth of aerial and substrate mycelium varied in different culture media used. Most of the isolates were able to hydrolysis starch and urea; able to survive at 5% concentration of sodium chloride; optimum temperature for their growth was 30 °C. Conclusions: The results of the present study revealed that freshwater actinomycetes of Lake Tana appear to have immense potential as a source of antibacterial compounds.

  11. Purification and characterization of protease enzyme from actinomycetes and its cytotoxic effect on cancer cell line (A549)

    Institute of Scientific and Technical Information of China (English)

    C Balachandran; V Duraipandiyan; S Ignacimuthu

    2012-01-01

    Objective: To isolate active actinomycetes from soil samples of Northern Himalayas and study their culture characterization, protease production and cytotoxic effects on cancer cell line (A549). Methods: Forty six strains of actinomycetes were isolated from the soil collected from Northern Himalayas, India. Isolation of actinomycetes was performed by serial dilution plate technique. Forty six isolated actinomycetes cultures were grown in ISP 2 medium to study the morphology and biochemical characteristics. Isolated strains were studied for protease enzyme production in skim milk agar medium with solubilising capacity. Seven isolates were studied for melanin pigmentation and different NaCl concentration. Effects of environmental conditions influencing protease enzyme production of seven isolated strains were also studied at different pH, temperature and metal ions (β-mercaptoethanol, dithiothreitol, iodoacetamide, MgSO4, CaCl2 and EDTA). The seven isolates were also studied for lytic enzyme activity using different bacteria and yeast such as Pseudomonas aeruginosa (P. aeruginosa), Enterococcus feacalis (E. feacalis), Escherishia coli (E. coli), Candida albicans (C. albicans), Bacillus subtilis (B. subtilis), Klebsiella pneumonia (K. pneumonia) and Staphylococcus aureus (S. aureus). Results: Isolates ERIA-31 and ERIA-33 produced more protease enzyme activity in modified nutrient agar media compared to other actinomycetes cultures. ERIA-31 and ERIA-33 were tested for cytotoxic effect in human adenocarcinoma cancer cell line (A549). IC50 for ERIA-31 was 57.04 μg/mL and IC50 for ERIA-33 was 55.07 μg/mL. Conclusion: Actinomycete being a protease producing bacteria has the potential for use in industrial purpose, pharmaceuticals, cytotoxic agent and its proteolytic activity. Isolates of ERIA-31 and ERIA-33 produced significant amount of protease enzymes.

  12. Use of bacteriophage for the selective isolation of thermophilic actinomycetes from composted eucalyptus bark.

    Science.gov (United States)

    Kurtböke, D I; Murphy, N E; Sivasithamparam, K

    1993-01-01

    A method was developed to reduce the numbers of thermophilic bacteria on isolation plates, which in turn facilitated the detection and isolation of thermophilic actinomycetes. The method involves exposing the test material to bacteriophage suspensions prior to inoculation on isolation plates. This method was applied to composted eucalyptus bark samples, which were then inoculated on R8 and 1/2 TSA + 0.2% casein hydrolysate agar plates. The phage susceptibility of thermophilic bacteria provided a selective means of reducing their numbers on isolation plates and hence increased the numbers of Thermomonospora, Saccharopolyspora rectivirgula, and thermophilic Streptomyces spp. on these media in comparison with the numbers recorded from control plates.

  13. EXPLORATION OF ACTINOMYCETES ENDOPHYTICALLY ASSOCIATED WITH PIPER NIGRUM FOR POTENTIAL BIOACTIVITY

    Directory of Open Access Journals (Sweden)

    Jasim B.

    2015-02-01

    Full Text Available Piper nigrum is well known for its metabolite richness. So endophytic microorganisms that reside within such environments can be expected to have promising biosynthetic potential. The current study identified three endophytic actinomycetes with broad bioactivity which can have applications in natural product related pharmacological research. The Verrucosispora sp identified in the study was found to have promising anticancer and antimicrobial activities and Streptomyces sp. was found to have antioxidant activity. The results obtained are supported by many previous reports and this suggests the isolates obtained in the study to have the possible presence of potential known or novel compounds with broad spectrum of activity.

  14. Characterization of cytotoxic compound from marine sediment derived actinomycete Streptomyces avidinii strain SU4

    Institute of Scientific and Technical Information of China (English)

    Sudha; S; Masilamani; Selvam; M

    2012-01-01

    Objective:To investigate the cytotoxic activity of actinomycete isolated from marine sediment.Methods:In the present study the DNA was isolated and the ITS region of 16s rRNA was amplified by polymerase chain reaction,using two universal bacterial primers,1492K(5’-GGTTACCTTG’TTAC GACTT-3’)and Eubac27F(5’-AGAGTTTGATCCTGGCTC AG-3’).The amplified products were purified using TIANgel mini purification kit,ligated to MD18-T simple vector(TaKaRa),and transformed into competent cells of Escherichia coli DH5α.16S rRNA gene fragment was sequenced using forward primer M13F(-47)and reverse primer M13R(-48).Blast search sequence similarity was found against the existing non-redundanl nucleotide sequence database thus,identified as Streptomyces sp SU,Streptomyces rubralavandulae strain SU1,Streptomyces cacaoi strain SU2,Streptomyces cavourensis strain SU3,Streptomyces avidinii strain SU4,Streptomyces globisporus strain SU5,Streptomyces variabilis strain SU6,Streptomyces coelicolor strain SU 7.Among the eight identified isolates,one actinomycete Streptomyces avidinii strain SU4 was selected for further study.Results:Crude extract of the actinomycete isolate exhibited IC50in 64.5μg against Hep-2 cell line,250μg in VERO cell line.This value is very close to the criteria of cytotoxicity activity for the crude extracts,as established by the American National Cancer Institute(NCI)is in IC50<30μg/mL.The CC MS analysis showed that the active principle might be 1,2-benzenedicarboxylic acid,bis(2-methylpropyl)ester(12.17%),isooctyl phthalate(15.29%)with the retention time 15.642 and 21.612,respectively.Conclusions:This study clearly proves that the marine sediment derived actinomycetes with bioactive metabolites can be expected to provide high quality biological material for high throughout biochemical and anticancer screening programs.These results help us to conclude that the potential of using metabolic engineering and post genomic

  15. Characterization of cytotoxic compound from marine sediment derived actinomycete Streptomyces avidinii strain SU4

    Institute of Scientific and Technical Information of China (English)

    Sudha S; Masilamani Selvam M

    2012-01-01

    To investigate the cytotoxic activity of actinomycete isolated from marine sediment. Methods: In the present study the DNA was isolated and the ITS region of 16s rRNA was amplified by polymerase chain reaction, using two universal bacterial primers, 1492R (5′-GGTTACCTTGTTAC GACTT-3′) and Eubac27F (5′-AGAGTTTGATCCTGGCTC AG-3′). The amplified products were purified using TIANgel mini purification kit, ligated to MD18-T simple vector (TaKaRa), and transformed into competent cells of Escherichia coli DH5α. 16S rRNA gene fragment was sequenced using forward primer M13F (-47) and reverse primer M13R (-48). Blast search sequence similarity was found against the existing non-redundant nucleotide sequence database thus, identified as Streptomyces sp SU, Streptomyces rubralavandulae strain SU1, Streptomyces cacaoi strain SU2, Streptomyces cavourensis strain SU3, Streptomyces avidinii strain SU4, Streptomyces globisporus strain SU5, Streptomyces variabilis strain SU6, Streptomycescoelicolor strain SU 7. Among the eight identified isolates, one actinomycete Streptomyces avidinii strain SU4 was selected for further study. Results: Crude extract of the actinomycete isolate exhibited IC50 in 64.5 μg against Hep-2 cell line, 250 μg in VERO cell line. This value is very close to the criteria of cytotoxicity activity for the crude extracts, as established by the American National Cancer Institute (NCI) is in IC50 < 30 μg /mL. The GC MS analysis showed that the active principle might be 1,2-benzenedicarboxylic acid, bis(2-methylpropyl) ester (12.17%), isooctyl phthalate (15.29%) with the retention time 15.642 and 21.612, respectively. Conclusions: This study clearly proves that the marine sediment derived actinomycetes with bioactive metabolites can be expected to provide high quality biological material for high throughout biochemical and anticancer screening programs. These results help us to conclude that the potential of using metabolic engineering and post genomic

  16. Streptomyces temperate bacteriophage integration systems for stable genetic engineering of actinomycetes (and other organisms).

    Science.gov (United States)

    Baltz, Richard H

    2012-05-01

    ϕC31, ϕBT1, R4, and TG1 are temperate bacteriophages with broad host specificity for species of the genus Streptomyces. They form lysogens by integrating site-specifically into diverse attB sites located within individual structural genes that map to the conserved core region of streptomycete linear chromosomes. The target genes containing the ϕC31, ϕBT1, R4, and TG1 attB sites encode a pirin-like protein, an integral membrane protein, an acyl-CoA synthetase, and an aminotransferase, respectively. These genes are highly conserved within the genus Streptomyces, and somewhat conserved within other actinomycetes. In each case, integration is mediated by a large serine recombinase that catalyzes unidirectional recombination between the bacteriophage attP and chromosomal attB sites. The unidirectional nature of the integration mechanism has been exploited in genetic engineering to produce stable recombinants of streptomycetes, other actinomycetes, eucaryotes, and archaea. The ϕC31 attachment/integration (Att/Int) system has been the most widely used, and it has been coupled with the ϕBT1 Att/Int system to facilitate combinatorial biosynthesis of novel lipopeptide antibiotics in Streptomyces fradiae.

  17. Screening of Marine Actinomycetes from Segara Anakan for Natural Pigment and Hydrolytic Activities

    Science.gov (United States)

    Asnani, A.; Ryandini, D.; Suwandri

    2016-02-01

    Marine actinomycetes have become sources of great interest to natural product chemistry due to their new chemical entities and bioactive metabolites. Since April 2010, we have screened actinobacteria from five sites that represent different ecosystems of Segara Anakan lagoon. In this present study we focus on specific isolates, K-2C which covers 1) actinomycetes identification based on morphology observation and 16S rRNA gene; 2) fermentation and isolation of pigment; 3) structure determination of pigment; and 4) hydrolytic enzymes characterization; Methodologies relevant to the studies were implemented accordingly. The results indicated that K-2C was likely Streptomyces fradiae strain RSU15, and the best fermentation medium should contain starch and casein with 21 days of incubation. The isolate has extracellular as well as intracellular pigments. Isolated pigments gave purple color with λmax of 529.00 nm. The pigment was structurally characterized. Interestingly, Streptomyces K-2C was able to produce potential hydrolytic enzymes such as amylase, cellulase, protease, lipase, urease, and nitrate reductase.

  18. Endophytic Actinomycetes: A Novel Source of Potential Acyl Homoserine Lactone Degrading Enzymes

    Directory of Open Access Journals (Sweden)

    Surang Chankhamhaengdecha

    2013-01-01

    Full Text Available Several Gram-negative pathogenic bacteria employ N-acyl-L-homoserine lactone (HSL quorum sensing (QS system to control their virulence traits. Degradation of acyl-HSL signal molecules by quorum quenching enzyme (QQE results in a loss of pathogenicity in QS-dependent organisms. The QQE activity of actinomycetes in rhizospheric soil and inside plant tissue was explored in order to obtain novel strains with high HSL-degrading activity. Among 344 rhizospheric and 132 endophytic isolates, 127 (36.9% and 68 (51.5% of them, respectively, possessed the QQE activity. The highest HSL-degrading activity was at 151.30±3.1 nmole/h/mL from an endophytic actinomycetes isolate, LPC029. The isolate was identified as Streptomyces based on 16S  rRNA gene sequence similarity. The QQE from LPC029 revealed HSL-acylase activity that was able to cleave an amide bond of acyl-side chain in HSL substrate as determined by HPLC. LPC029 HSL-acylase showed broad substrate specificity from C6- to C12-HSL in which C10HSL is the most favorable substrate for this enzyme. In an in vitro pathogenicity assay, the partially purified HSL-acylase efficiently suppressed soft rot of potato caused by Pectobacterium carotovorum ssp. carotovorum as demonstrated. To our knowledge, this is the first report of HSL-acylase activity derived from an endophytic Streptomyces.

  19. Endophytic actinomycetes: a novel source of potential acyl homoserine lactone degrading enzymes.

    Science.gov (United States)

    Chankhamhaengdecha, Surang; Hongvijit, Suphatra; Srichaisupakit, Akkaraphol; Charnchai, Pattra; Panbangred, Watanalai

    2013-01-01

    Several Gram-negative pathogenic bacteria employ N-acyl-L-homoserine lactone (HSL) quorum sensing (QS) system to control their virulence traits. Degradation of acyl-HSL signal molecules by quorum quenching enzyme (QQE) results in a loss of pathogenicity in QS-dependent organisms. The QQE activity of actinomycetes in rhizospheric soil and inside plant tissue was explored in order to obtain novel strains with high HSL-degrading activity. Among 344 rhizospheric and 132 endophytic isolates, 127 (36.9%) and 68 (51.5%) of them, respectively, possessed the QQE activity. The highest HSL-degrading activity was at 151.30 ± 3.1 nmole/h/mL from an endophytic actinomycetes isolate, LPC029. The isolate was identified as Streptomyces based on 16S  rRNA gene sequence similarity. The QQE from LPC029 revealed HSL-acylase activity that was able to cleave an amide bond of acyl-side chain in HSL substrate as determined by HPLC. LPC029 HSL-acylase showed broad substrate specificity from C6- to C12-HSL in which C10HSL is the most favorable substrate for this enzyme. In an in vitro pathogenicity assay, the partially purified HSL-acylase efficiently suppressed soft rot of potato caused by Pectobacterium carotovorum ssp. carotovorum as demonstrated. To our knowledge, this is the first report of HSL-acylase activity derived from an endophytic Streptomyces.

  20. Antimethicilin resistance agents from marine actinomycetes from soil sediments of Lagos Lagoon

    Institute of Scientific and Technical Information of China (English)

    Davies Olabisi Flora; Adeleye Isaac Adeyemi; Wang Peng George

    2015-01-01

    Objective:To evaluate theisolation of actinomycetes strains with potential for producing antimicrobials with high methicilin resistance capability. Methods: The soil samples were collected from four different locations of Lagos lagoon. TheActinomycetes were isolated from the samples by serial dilution using spread plate method. Isolates were selected based on their cultural characteristics as well as their Gram reaction and phenotypically and molecularly characterizedStreptomyces sp. Isolates were inoculated in starch casein and Kuster’s broth media and secondary metabolites were screened for antimicrobial activity against the following microorganisms: methicillin resistant Staphylococcus aureus,Staphylococcus aureusATCC29213,Escherichia coliATCC 29522, Pseudomonas aeruginosaATCC27853,Candida albicans,Enterococcus faecalisATCC 29212. Coagulase-negative staphylococci isolated fromHIV patients were also used (Staphylococcus warneri,Staphylococcus xylosus andStaphylococcus epidermidis). The antimicrobial metabolites of the isolates were identified using gas chromatography-mass spectrometer. Results:Extracts from isolatesULS12 andULS13 showed antimicrobial activity against methicillin resistantStaphylococcus aureus whileULK3 inhibitedCandida albicans only. The gas chromatography-mass spectrometerdata analysis showed the antibiotic profile of these isolates. Conclusions: The isolatesULS12 andULS13 were found to display the highest antimicrobial activity against the test organisms and could be a potential source of new antibiotics.

  1. Antimethicilin resistance agents from marine actinomycetes from soil sediments of Lagos Lagoon

    Directory of Open Access Journals (Sweden)

    Davies Olabisi Flora

    2015-03-01

    Full Text Available Objective: To evaluate the isolation of actinomycetes strains with potential for producing antimicrobials with high methicilin resistance capability. Methods: The soil samples were collected from four different locations of Lagos lagoon. The Actinomycetes were isolated from the samples by serial dilution using spread plate method. Isolates were selected based on their cultural characteristics as well as their Gram reaction and phenotypically and molecularly characterized Streptomyces sp. Isolates were inoculated in starch casein and Kuster’s broth media and secondary metabolites were screened for antimicrobial activity against the following microorganisms: methicillin resistant Staphylococcus aureus, Staphylococcus aureus ATCC 29213, Escherichia coli ATCC 29522, Pseudomonas aeruginosa ATCC 27853, Candida albicans, Enterococcus faecalis ATCC 29212. Coagulase-negative staphylococci isolated from HIV patients were also used (Staphylococcus warneri, Staphylococcus xylosus and Staphylococcus epidermidis. The antimicrobial metabolites of the isolates were identified using gas chromatography-mass spectrometer. Results: Extracts from isolates ULS12 and ULS13 showed antimicrobial activity against methicillin resistant Staphylococcus aureus while ULK3 inhibited Candida albicans only. The gas chromatography-mass spectrometer data analysis showed the antibiotic profile of these isolates. Conclusions: The isolates ULS12 and ULS13 were found to display the highest antimicrobial activity against the test organisms and could be a potential source of new antibiotics.

  2. Azalomycin F4a 2-ethylpentyl ester, a new macrocyclic lactone, from mangrove actinomycete Streptomyces sp.211726

    Institute of Scientific and Technical Information of China (English)

    Gan Jun Yuan; Kui Hong; Hai Peng Lin; Jia Li

    2010-01-01

    Azalomycin F4a 2-ethylpentyl ester,a new 36-membered macrocyclic lactone antibiotic,was isolated from mangrove actinomycete Streptomyces sp.211726.Its structure was elucidated on the basis of spectroscopic data.The compound showed broad-spectrum antifungal activity and moderate cytotoxicity against human colon tumor cell HCT-116.

  3. In vitro Antimicrobial Assay of Actinomycetes in Rice AgainstXanthomonas oryzae pv. oryzicola and as Potential Plant Growth Promoter

    Directory of Open Access Journals (Sweden)

    Erneeza Mohd Hata

    2015-12-01

    Full Text Available ABSTRACT The aim of this work was to invitro assay the antimicrobial activity of actinomycetes in rice against Xanthomonas oryzae pv. oryzicola and as potential plant growth promoter. A total of 92 actinomycete strains were isolated from different rice plant components and field locations. Of these, only 21.74% showed antagonistic activity against the Xoc pathogen. Molecular identification via 16s rRNA amplification revealed that 60% of the active antagonistic strains belonged to the genus Streptomyces. Isolates that demonstrated the highest antagonistic activity were also able to produce hydrolytic enzymes and plant growth-promoting hormones. Combination of preliminary screening based on in vitro antagonistic, hydrolytic enzyme and plant growth hormone activity facilitated the best selection of actinomycete candidates as evidenced by strains classification using cluster analysis (Ward's Method. Results from the preliminary screening showed that actinomycetes, especially Streptomycetes, could offer a promising source for both biocontrol and plant growth-promotion agents against BLS disease in rice.

  4. Pesquisas sobre a imunidade da Framboesia tropica no homem: observações feitas em 33 superinoculações e 7 reinoculações

    Directory of Open Access Journals (Sweden)

    F. Nery Guimarães

    1946-03-01

    em germes. 5 Existe na framboesia trópica uma verdadeira imunidade além de uma simples resistência á superinoculação devido a presença da infecção ativa ou latente. Com efeito, pacientes tratados em determinado período da molestia e curados clinica e sorologicamente, mostraram resistência parcial á reinoculação, reagindo de modo semelhante a outros do mesmo período de molestia e não tratados. 6 A imunidade na framboesia tropica se manifesta seja como uma resistência á superinoculação ou reinoculação seja como uma modificação da lesão boubatica inicial, seja, finalmente, como uma resistência á generalização da doença. 7 Os resultados das esperiências sugerem que as diferentes manifestações cutaneas da molestia são condicionadas até certo ponto pelo estado imunitario do organismo infectado. 8 Os diferentes gráus de imunidade, encontrados na framboesia trópica, estão até certo ponto relacionados com o tempo de doença. Porém, são atingidos mais ou menos ràpidamente, segundo o organismo infectado e, talvez segundo a virulência do treponema, do mesmo modo como os chamados "secundarismo" e 'terciarismo" da doença.The following conclusions are drawn from the results of the 40 experiments described above: 1 From the 2nd to the 8th month there is a great resistance to super-infection. a Such resistance seems to be independent of the presence of cutaneous lesions and occurred even in cases with only the initial lesion. b Within this period, resistance disappears with treatment: patients treated and reinoculated acquire yaws in the normal time. This fact suggests that this resistance is conditioned by the presence of an active or latent infection, being not a true immunity (an immunity in its classical conception. c When homovirus is used, resistance lasted about one year of the disease. 2 From the 10th month to the 4th year of the disease, there is a partial resistance, which manifests itself by two modes, according to the nature of

  5. Components in Antineoplastic Actinomycete Strain(N2010-37)of Bottom Mud in Mangrove

    Institute of Scientific and Technical Information of China (English)

    ZHOU Zhong-liu; JIN Bei; YIN Wen-qing; FU Chun-yan; FENG Hua-fen

    2011-01-01

    Objective To study the antitumor components from an actinomycete strain(N2010-37)of bottom mud in Zhanjiang Mangrove,South China Sea.Methods The components were isolated and purified by chromatographic techniques and recrystallization,and the structures were identified by spectral methods together with physicochemical analyses.The antitumor effects of these components were tested in vitro by MTT method.Results Three compounds were identified including two anthrones and one novel lactone.They are(3S,4R,7R,8R,9S)-3,8-dihydroxy-4,7,9-trimethyl-2,6-cyclononanediolacetone(1),2-hydroxy-l-methoxy-3-methylanthraquinone(2),and 1,6,8-thihydroxy-3-methyl-anthraquinone(3).Conclusion Compound 1 is a new compound,and compounds 1 and 3 show the favorablecytotoxic activities against human chronic granulocytic leukemia cell line K562 strain by MTT method in vitro.

  6. Nocardia kroppenstedtii sp. nov., an actinomycete isolated from a lung transplant patient with a pulmonary infection.

    LENUS (Irish Health Repository)

    Jones, Amanda L

    2014-03-01

    A novel actinomycete, strain N1286(T), isolated from a lung transplant patient with a pulmonary infection, was provisionally assigned to the genus Nocardia. The strain had chemotaxonomic and morphological properties typical of members of the genus Nocardia and formed a distinct phyletic line in the Nocardia 16S rRNA gene tree. Isolate N1286(T) was most closely related to Nocardia farcinica DSM 43665(T) (99.8% gene sequence similarity) but could be distinguished from the latter by the low level of DNA-DNA relatedness. These strains were also distinguishable on the basis of a broad range of phenotypic properties. It is concluded that strain N1286(T) represents a novel species of the genus Nocardia for which the name Nocardia kroppenstedtii sp. nov. is proposed. The type strain is N1286(T) ( = DSM 45810(T) = NCTC 13617(T)).

  7. Semi-solid-state fermentation: a promising alternative for neomycin production by the actinomycete Streptomyces fradiae.

    Science.gov (United States)

    Machado, Isabel; Teixeira, José A; Rodríguez-Couto, Susana

    2013-06-10

    The production of neomycin by the actinomycete Streptomyces fradiae, under semi-solid-state fermentation conditions was the main subject of this study. Two supports (nylon sponge and orange peelings) were tested in order to determine the most suitable one for the production of neomycin by the above-mentioned microorganism. Nylon sponge led to the highest neomycin production, reaching a maximum value of 13,903 μg/mL on the 10th day of cultivation. As a control, the same experiment was performed under submerged fermentation (SmF) conditions, without solid support. Here the production of neomycin by S. fradiae was about 55-fold lower (i.e. 250 μg/mL) than that obtained for SSF.

  8. Identification of the Entner-Doudoroff pathway in an antibiotic-producing actinomycete species

    DEFF Research Database (Denmark)

    Gunnarsson, Nina; Mortensen, Uffe Hasbro; Sosio, M.;

    2004-01-01

    The metabolic network of the central carbon metabolism represents the backbone of cellular metabolism and provides the precursors and cofactors required for synthesis of secondary metabolites. It is therefore pivotal to map the operating metabolic network in the central carbon metabolism in order...... to design metabolic engineering strategies towards construction of more efficient producers of specific metabolites. In this context, methods that allow rapid and reliable mapping of the central carbon metabolism are valuable. In the present study, a C-13 labelling-based method was used to identify...... the primary metabolic pathways of the poorly characterized antibiotic-producing actinomycete Nonomuraea sp. ATCC 39727. Surprisingly, it was found that Nonomuraea sp. ATCC 39272 predominantly metabolizes glucose via the Entner-Doudoroff (ED) pathway. This represents the first time that the ED pathway has been...

  9. Himalomycin A and cycloheximide-producing marine actinomycete from Lagos Lagoon soil sediment

    Directory of Open Access Journals (Sweden)

    Davies Olabisi Flora

    2015-05-01

    Full Text Available Objective: To isolate and screen Actinomycetes from Lagos Lagoon soil sediments for antibiotic production. Methods: Soil samples were collected from four different locations of Lagos Lagoon and were dried for 2 weeks. Actinomycetes were isolated by serial dilution using spread plate method on starch casein and Kuster’s agar supplemented with 80 μg/mL cycloheximide to prevent fungal growth. The plates were incubated at 28 °C for 1-2 weeks. Isolates were selected based on their cultural characteristics as well as their Gram’s reaction and subcultured on same media for isolation and incubated at 28 °C for 3 days. Pure cultures were maintained on nutrient agar slants at 4 °C. Thereafter, they were inoculated into starch casein and Kuster’s broth media and incubated at 28 °C for 8 days. The resulting crude extracts were screened for antimicrobial activity against the following microorganisms: methicillin resistant Staphylococcus aureus, Staphylococcus aureus ATCC 29213, Escherichia coli ATCC 29522, Pseudomonas aeruginosa ATCC 27853, Candida albicans and Enterococcus faecalis ATCC 29212. Coagulasenegative staphylococci isolated from HIV patients were also used (Staphylococcus warneri, Staphylococcus xylosus and Staphylococcus epidermidis. Extraction of secondary metabolites was carried out and analysed using gas chromatography-mass spectrometer. Results: All the isolates displayed varying antimicrobial activity against at least one of the test organisms. Himalomycin A was identified in the extract from isolate ULS7. The gas chromatography-mass spectrometer data analysis showed the antibiotic profile of these isolates. Conclusions: The isolate ULS7 was found to display the highest antimicrobial activity against the test organisms.

  10. Antibiotic Producing Potentials of Three Freshwater Actinomycetes Isolated from the Eastern Cape Province of South Africa

    Directory of Open Access Journals (Sweden)

    Timothy Sibanda

    2010-07-01

    Full Text Available Crude extracts of three actinomycetes species belonging to Saccharopolyspora (TR 046 and TR 039 and Actinosynnema (TR 024 genera were screened for antibacterial activities against a panel of several bacterial strains. The extracts showed antibacterial activities against both gram-negative and gram-positive test bacteria with inhibition zones ranging from 8 to 28 mm (TR 046; 8 to15 mm (TR 039; and 10 to 13 mm (TR 024. The minimum inhibitory concentrations ranged from 0.078 to 10 mg/mL (TR 046; 5 to >10 mg/mL (TR 039; and 1.25 to 5 mg/mL (TR 024. Time-kill studies revealed that crude extract of TR 046 showed strong bactericidal activity against Bacillus pumilus (ATCC14884, reducing the bacterial load by 104 cfu/mL and 102 cfu/mL at 4× MIC and 2× MIC, respectively, after 6 h of exposure. Similarly, against Proteus vulgaris (CSIR 0030, crude extract of TR 046 achieved a 0.9log10 and 0.13log10 cfu/mL reduction at 5 mg/mL (4× MIC and 1.25 mg/mL (2× MIC after 12 h of exposure. The extract was however weakly bactericidal against two environmental bacterial strains (Klebsiella pneumoniae and Staphylococcus epidermidis; and against Pseudomonas aeruginosa (ATCC 19582: the extract showed bacteriostatic activities at all concentrations tested. These freshwater actinomycetes appear to have immense potential as a source of new antibacterial compound(s.

  11. Himalomycin A and cycloheximide-producing marine actinomycete from Lagos Lagoon soil sediment

    Institute of Scientific and Technical Information of China (English)

    Davies Olabisi Flora; Adeleye IsaacAdeyemi; Wang Peng George

    2015-01-01

    Objective: To isolate and screen Actinomycetes from Lagos Lagoon soil sediments for antibiotic production. Methods: Soil samples were collected from four different locations of Lagos Lagoon and were dried for 2 weeks. Actinomycetes were isolated by serial dilution using spread plate method on starch casein and Kuster’s agar supplemented with 80 μg/mL cycloheximide to prevent fungal growth. The plates were incubated at 28 °C for 1-2 weeks. Isolates were selected based on their cultural characteristics as well as their Gram’s reaction and subcultured on same media for isolation and incubated at 28 °C for 3 days. Pure cultures were maintained on nutrient agar slants at 4 °C. Thereafter, they were inoculated into starch casein and Kuster’s broth media and incubated at 28 °C for 8 days. The resulting crude extracts were screened for antimicrobial activity against the following microorganisms: methicillin resistant Staphylococcus aureus, Staphylococcus aureus ATCC 29213, Escherichia coli ATCC 29522, Pseudomonas aeruginosa ATCC 27853, Candida albicans and Enterococcus faecalis ATCC 29212. Coagulase-negative staphylococci isolated from HIV patients were also used (Staphylococcus warneri, Staphylococcus xylosus and Staphylococcus epidermidis). Extraction of secondary metabolites was carried out and analysed using gas chromatography-mass spectrometer. Results: All the isolates displayed varying antimicrobial activity against at least one of the test organisms. Himalomycin A was identified in the extract from isolate ULS7. The gas chromatography-mass spectrometer data analysis showed the antibiotic profile of these isolates. Conclusions: The isolate ULS7 was found to display the highest antimicrobial activity against the test organisms.

  12. Antimicrobial Activities of Some Actinomycetes Isolated from Different Rhizospheric Soils in Tunisia.

    Science.gov (United States)

    Trabelsi, Ines; Oves, Daniel; Manteca, Angel; Genilloud, Olga; Altalhi, Abdullah; Nour, Mohamed

    2016-08-01

    Fifty four isolates of actinomycetes were collected from four different rhizospheric soils: 18 strains from palm tree bark and soil, 12 strains from an olive field soil, 9 strains from a coastal forest, and 15 strains from an agriculture soil situated in the Algerian-Tunisian border (Oum Tboul). Based on morphological and cultural characters, the isolates were classified as Streptomyces (42 strains), Micromonospora (4 strains), Pseudonocardia (1 strain), Actinomadura (1 strain), Nocardia (1 strain), and non-Streptomyces (5 strains). More than half of the isolates inhibited at least one tested pathogenic microorganisms in liquid culture. In addition, antimicrobial activities of some strains were tested on solid culture. Several bioactive compounds were identified by liquid chromatography joined with low-resolution mass spectroscopy (LC/MS) and analysed by MEDINA's database and by the dictionary of natural products Chapman & Hall. An interesting chlorinated compound with the molecular formula C20H37ClN2O4, produced by three different strains (SF1, SF2, and SF5), was subject of an attempted purification. However, it was demonstrated using confocal microscopy and LC/MS high resolution that this compound is produced only on solid culture. These three potential antimicrobial isolates showed high similarity with Streptomyces thinghirensis and Streptomyces lienomycini, in terms of morphological characteristics and 16S rRNA gene sequences (bootstrap 97 %). All these findings prove the high antimicrobial diversity of the studied soils. The potential of the selected and other relatively unexplored extreme environments constitute a source of interesting actinomycete strains producing several biologically active secondary metabolites. PMID:27139253

  13. SCREENING, ISOLATION AND PURIFICATION OF ANTIBIOTIC(S FROM MARINE ACTINOMYCETES

    Directory of Open Access Journals (Sweden)

    Attimarad S L

    2012-06-01

    Full Text Available As marine environmental conditions are extremely different from terrestrial ones, it is surmised that marine actinomycetes might produce novel bioactive compounds. Hence marine sediments, collected from the coastal areas of Gokharna and Muradeshwara of Karnataka state, were screened. Seventeen isolates were obtained on starch-casein agar media by soil dilution technique. However, only six isolates namely SUN-A2, SUN-A3, SUN-A4, SUN-A5, SUN-A7 and SUN-A15 showed significant antibacterial activity against both gram-positive and gram-negative bacteria. Further studies were carried out with the most active SUN-A2. Optimization of media, temperature and pH by shake flask fermentation indicated starch-casein, 28o C and pH 7 to be suitable for SUN-A2. The production of antibiotics began after 24 h reached maximum at 72 h and maintained at the same level up to 120 h. Ethyl acetate was used to extract antibacterial compounds from the culture filtrate. TLC was done on silica gel using ethyl acetate: methanol (6:4 and direct bioautography showed the presence of two active substance, one with Rf 0.8 more active than the other with Rf 0.4. Further purification is done by column chromatography using a mixture of dicholoromethane and ethyl acetate. The findings from this investigation reveal that the strain SUN-A2 in order exhibited superior antimicrobial activity to other sediment isolates of actinomycetes.

  14. Clear felling and burning effects on soil nitrogen transforming bacteria and actinomycetes population in Chittagong University campus, Bangladesh

    Institute of Scientific and Technical Information of China (English)

    S.M.Sirajul Haque; Rahima Ferdoshi; Sohag Miah; M.Nural Anwar

    2012-01-01

    The effect of forests clear felling and associated burning on the population of soil nitrogen transforming bacteria and actinomycetes are reported at three pair sites of Chittagong University campus,Bangladesh in monsoon tropical climate.Clear felled area or burnt site and 15-21 year mixed plantation of native and exotic species,situated side by side on low hill having Typic Dystrochrepts soil was represented at each pair site.At all the three pair sites,clear felled area or burnt site showed very significantly (p≤0.001) lower population of actinomycetes,Rhizobium,Nitrosomonas,Nitrobacter and ammonifying as well as denitrifying bacteria compared to their adjacent mixed plantation.From environmental consideration,this finding has implication in managing natural ecosystem.

  15. Distribution and generic composition of culturable marine actinomycetes from the sediments of Indian continental slope of Bay of Bengal

    Institute of Scientific and Technical Information of China (English)

    Surajit DAS; P.S.LYLA; S.AJMAL KHAN

    2008-01-01

    Actinomycetes population from continental slope sediment of the Bay of Bengal was studied.Samples were collected during two voyages of FORV Sagar Sampada in 2004 (May-June) and 2005 (July) respectively from 11 transects (each transect had ca.200m,500m,and 1000m depth stations).The physicochemical parameters of overlying water,and sediment samples were also recorded.The actinomycete population ranged from 5.17 to 51.94 CFU/g dry sediment weight and 9.38 to 45.22 CFU/g dry sediment weight during the two cruises respectively.No actinomycete colony was isolated from stations in 1000m depth.Two-way analysis of variance showed significant variation among stations (ANOVA two-way,P0.05),but no significance was found between the two cruises (ANOVA two-way,P0.05).Three actinomycetes genera were identified.Streptomyces was found to be the dominating one in both the cruises,followed by Micromonospora,and Actinomyces.The spore of Streptomyces isolates showed the abundance in spiral spore chain.Spore surface was smooth.Multiple regression analysis revealed that the influencing physico-chemical factors were sediment pH,sediment temperature,TOC,porosity,salinity,and pressure.The media used in the present study was prepared with seawater.Thus,they may represent an autochthonous marine flora and deny the theory of land runoff carriage into the sea for adaptation to the salinity of the seawater and sediments.

  16. Degradative crystal–chemical transformations of clay minerals under the influence of cyanobacterium-actinomycetal symbiotic associations

    Directory of Open Access Journals (Sweden)

    Ekaterina Ivanova

    2014-04-01

    Full Text Available Cyanobacteria and actinomycetes are essential components of soil microbial community and play an active role in ash elements leaching from minerals of the parent rock. Content and composition of clay minerals in soil determine the sorption properties of the soil horizons, water-holding capacity of the soil, stickiness, plasticity, etc. The transformative effect of cyanobacterial–actinomycetes associations on the structure of clay minerals – kaolinite, vermiculite, montmorillonite, biotite and muscovite – was observed, with the greatest structural lattice transformation revealed under the influence of association in comparison with monocultures of cyanobacterium and actinomycete. The range of the transformative effect depended both on the type of biota (component composition of association and on the crystal–chemical parameters of the mineral itself (trioctahedral mica – biotite, was more prone to microbial degradation than the dioctahedral – muscovite. The formation of the swelling phase – the product of biotite transformation into the mica–vermicullite mixed-layered formation was revealed as a result of association cultivation. Crystal chemical transformation of vermiculite was accompanied by the removal of potassium (К, magnesium (Mg and aluminum (Al from the crystal lattice. The study of such prokaryotic communities existed even in the early stages of the Earth's history helps to understand the causes and nature of the transformations undergone by the atmosphere, hydrosphere and lithosphere of the planet.contribution of treatments on structure induces and model parameters are discussed in the paper.

  17. Structural and Functional Characterizations of SsgB, a Conserved Activator of Developmental Cell Division in Morphologically Complex Actinomycetes

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Qingping; Traag, Bjørn A.; Willemse, Joost; McMullan, Daniel; Miller, Mitchell D.; Elsliger, Marc-André; Abdubek, Polat; Astakhova, Tamara; Axelrod, Herbert L.; Bakolitsa, Constantina; Carlton, Dennis; Chen, Connie; Chiu, Hsiu-Ju; Chruszcz, Maksymilian; Clayton, Thomas; Das, Debanu; Deller, Marc C.; Duan, Lian; Ellrott, Kyle; Ernst, Dustin; Farr, Carol L.; Feuerhelm, Julie; Grant, Joanna C.; Grzechnik, Anna; Grzechnik, Slawomir K.; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Kozbial, Piotr; Krishna, S. Sri; Kumar, Abhinav; Marciano, David; Minor, Wladek; Mommaas, A. Mieke; Morse, Andrew T.; Nigoghossian, Edward; Nopakun, Amanda; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Puckett, Christina; Reyes, Ron; Rife, Christopher L.; Sefcovic, Natasha; Tien, Henry J.; Trame, Christine B.; van den Bedem, Henry; Wang, Shuren; Weekes, Dana; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.; van Wezel, Gilles P.; (Leiden-MC); (SLAC); (Scripps); (UV); (UCSD); (Burnham)

    2010-01-20

    SsgA-like proteins (SALPs) are a family of homologous cell division-related proteins that occur exclusively in morphologically complex actinomycetes. We show that SsgB, a subfamily of SALPs, is the archetypal SALP that is functionally conserved in all sporulating actinomycetes. Sporulation-specific cell division of Streptomyces coelicolor ssgB mutants is restored by introduction of distant ssgB orthologues from other actinomycetes. Interestingly, the number of septa (and spores) of the complemented null mutants is dictated by the specific ssgB orthologue that is expressed. The crystal structure of the SsgB from Thermobifida fusca was determined at 2.6 {angstrom} resolution and represents the first structure for this family. The structure revealed similarities to a class of eukaryotic 'whirly' single-stranded DNA/RNA-binding proteins. However, the electro-negative surface of the SALPs suggests that neither SsgB nor any of the other SALPs are likely to interact with nucleotide substrates. Instead, we show that a conserved hydrophobic surface is likely to be important for SALP function and suggest that proteins are the likely binding partners.

  18. Inhibition of Aspergillus parasiticus and cancer cells by marine actinomycete strains

    Science.gov (United States)

    Li, Ping; Yan, Peisheng

    2014-12-01

    Ten actinomycete strains isolated from the Yellow Sea off China's coasts were identified as belonging to two genera by 16S rDNA phylogenetic analysis: Streptomyces and Nocardiopsis. Six Streptomyces strains (MA10, 2SHXF01-3, MA35, MA05-2, MA05-2-1 and MA08-1) and one Nocardiopsis strain (MA03) were predicted to have the potential to produce aromatic polyketides based on the analysis of the KSα (ketoacyl-synthase) gene in the type II PKS (polyketides synthase) gene cluster. Four strains (MA03, MA01, MA10 and MA05-2) exhibited significant inhibitory effects on mycelia growth (inhibition rate >50%) and subsequent aflatoxin production (inhibition rate >75%) of the mutant aflatoxigenic Aspergillus parasiticus NFRI-95. The ethyl acetate extracts of the broth of these four strains displayed significant inhibitory effects on mycelia growth, and the IC50 values were calculated (MA03: 0.275 mg mL-1, MA01: 0.106 mg mL-1, MA10: 1.345 mg mL-1 and MA05-2: 1.362 mg mL-1). Five strains (2SHXF01-3, MA03, MA05-2, MA01 and MA08-1) were selected based on their high cytotoxic activities. The ethyl acetate extract of the Nocardiopsis strain MA03 was particularly noted for its high antitumor activity against human carcinomas of the cervix (HeLa), lung (A549), kidney (Caki-1) and liver (HepG2) (IC50: 2.890, 1.981, 3.032 and 2.603 μg mL-1, respectively). The extract also remarkably inhibited colony formation of HeLa cells at an extremely low concentration (0.5 μg mL-1). This study highlights that marine-derived actinomycetes are a huge resource of compounds for the biological control of aflatoxin contamination and the development of novel drugs for human carcinomas.

  19. 红树林海洋淤泥中放线菌的分离与鉴定%Identification and Analysis of Actinomycetes in Marine Mud of Mangrove

    Institute of Scientific and Technical Information of China (English)

    陈森洲; 刘菁; 陈建宏; 骆耐香; 钟毓娟; 蒋莲秀

    2011-01-01

    To explore actinomycetes resources in marine mud of mangrove in Beihai city of Guangxi province,actinomycete samples in marine mud of mangrove were separated by using seawater prepared Gause culture medium, total DNA of 10 typical strains of actinomycetes was screened, separated and extracted, 16Sr DNA was amplified by PCR with universal primers. The results from DNA sequencing and comparison identification of amplified product show that 10 typical strains of actinomycetes belong to 2 genera, 8 of which are common actinomycetes and belong to Streptomyces (80%), the other 2 are rare actinomycetes and belong to Nocardia (20%). All above indicate that there are abundant species of actinomycetes in marine mud of mangrove in Beihai city of Guangxi province.%为了解广西北海红树林海洋淤泥中的放线菌资源,采用海水配制高氏培养基分离红树林海洋淤泥中的放线菌样品,从中筛选、分离、提取lO株典型放线菌菌株总DNA,用放线菌通用引物对16Sr DNA进行PCR扩增,对获得的扩增结果进行DNA序列测定和对比鉴定.结果表明,10株典型放线菌菌株为2种菌属,其中有8株为链霉菌属(80%),为常见放线菌;有2株为拟诺卡氏菌属(20%),为稀有放线菌.表明,广西北海红树林海洋淤泥蕴含着种类丰富的放线菌.

  20. Protoplast preparation and reversion to the normal filamentous growth in antibiotic-producing uncommon actinomycetes.

    Science.gov (United States)

    Marcone, Giorgia Letizia; Carrano, Lucia; Marinelli, Flavia; Beltrametti, Fabrizio

    2010-02-01

    Protoplast preparation, regeneration and fusion represent essential tools for those poorly studied biotechnologically valuable microorganisms inapplicable with the current molecular biology protocols. The protoplast production and regeneration method developed for Planobispora rosea and using the combination of hen egg-white lysozyme (HEWL) and Streptomyces globisporus mutanolysin was applied to a set of antibiotic-producing filamentous actinomycetes belonging to the Streptosporangiaceae, Micromonosporaceae and Streptomycetaceae. 10(7)-10(9) protoplasts were obtained from 100 ml of culture, after incubation times in the digestion solution ranging from a few hours to 1 or 2 days depending on the strain. The efficiency of protoplast reversion to the normal filamentous growth varied from 0.1 to nearly 50%. Analysis of cell wall peptidoglycan in three representative strains (Nonomuraea sp. ATCC 39727, Actinoplanes teichomyceticus ATCC 31121 and Streptomyces coelicolor A3(2)) has evidenced structural variations in the glycan strand and in the peptide chain, which may account for the different response to cell digestion and protoplast regeneration treatments. PMID:20057514

  1. Hydrophobic nature and effects of culture conditions on biofilm formation by the cellulolytic actinomycete Thermobifida fusca

    Directory of Open Access Journals (Sweden)

    Almaris N. Alonso

    2015-09-01

    Full Text Available Thermobifida fusca produces a firmly attached biofilm on nutritive and non-nutritive surfaces, such as cellulose, glass, plastic, metal and Teflon®. The ability to bind to surfaces has been suggested as a competitive advantage for microbes in soil environments. Results of previous investigations indicated that a Gram-positive cellulolytic soil bacteria, Cellulomonas uda, a facultative aerobe, specifically adhered to nutritive surfaces forming biofilms, but cells did not colonize non-nutritive surfaces. Cell surface hydrophobicity has been implicated in the interactions between bacteria and the adhesion to surfaces. It was recently described that the cellulolytic actinomycete T. fusca cells hydrophobicity was measured and compared to the cellulolytic soil bacteria C. uda. Also, T. fusca biofilm formation on non-nutritive surface, such as polyvinyl chloride, was examined by testing various culture ingredients to determine a possible trigger mechanism for biofilm formation. Experimental results showed that partitioning of bacterial cells to various hydrocarbons was higher in T. fusca cells than in C. uda. The results of this study suggest that the attachment to multiple surfaces by T. fusca could depend on nutrient availability, pH, salt concentrations, and the higher hydrophobic nature of bacterial cells. Possibly, these characteristics may confer T. fusca a selective advantage to compete and survive among the many environments it thrives.

  2. Genome Sequence and Analysis of the Soil Cellulolytic ActinomyceteThermobifida fusca

    Energy Technology Data Exchange (ETDEWEB)

    Lykidis, Athanasios; Mavromatis, Konstantinos; Ivanova, Natalia; Anderson, Iain; Land, Miriam; DiBartolo, Genevieve; Martinez, Michele; Lapidus, Alla; Lucas, Susan; Copeland, Alex; Richardson, Paul; Wilson,David B.; Kyrpides, Nikos

    2007-02-01

    Thermobifida fusca is a moderately thermophilic soilbacterium that belongs to Actinobacteria. 3 It is a major degrader ofplant cell walls and has been used as a model organism for the study of 4secreted, thermostable cellulases. The complete genome sequence showedthat T. fusca has a 5 single circular chromosome of 3642249 bp predictedto encode 3117 proteins and 65 RNA6 species with a coding densityof 85percent. Genome analysis revealed the existence of 29 putative 7glycoside hydrolases in addition to the previously identified cellulasesand xylanases. The 8 glycosyl hydrolases include enzymes predicted toexhibit mainly dextran/starch and xylan 9 degrading functions. T. fuscapossesses two protein secretion systems: the sec general secretion 10system and the twin-arginine translocation system. Several of thesecreted cellulases have 11 sequence signatures indicating theirsecretion may be mediated by the twin-arginine12 translocation system. T.fusca has extensive transport systems for import of carbohydrates 13coupled to transcriptional regulators controlling the expression of thetransporters and14 glycosylhydrolases. In addition to providing anoverview of the physiology of a soil 15 actinomycete, this study presentsinsights on the transcriptional regulation and secretion of16 cellulaseswhich may facilitate the industrial exploitation of thesesystems.

  3. Diversity and bioactivity of actinomycetes from marine sediments of the Yellow Sea

    Science.gov (United States)

    Zhang, Shumin; Ye, Liang; Tang, Xuexi

    2012-03-01

    Among the 116 actinomycetes collected from marine sediments of the Yellow Sea, 56 grew slowly and appeared after 2-3 weeks of incubation. Among the 56 strains, only 3 required seawater (SW) for growth, and 21 grew well in the medium prepared with SW rather than distilled water (DW), while the remaining 32 grew well either with SW or with DW. Six representatives with different morphological characteristics, including 1 SW-requiring strain and 5 well-growing with SW strains, were selected for phylogenetic analysis based on 16S rRNA gene. Two strains belong to Micrococcaceae and Nocardiopsaceae respectively. The other 4 strains belong to the family of Streptomycetaceae. In the analyzed 6 strains, one was related to Nocardiopsis spp. and the other three were related to Streptomyces spp., representing new taxa. Bioactivity testing of fermentation products from 3 SW-requiring strains and 21 well-growing with SW strains revealed that 17 strains possessed remarkable activities against gram-positive pathogen or/and tumor cells, suggesting that they were prolific resources for natural drug discovery.

  4. Antibiotic pigment from desert soil actinomycetes; biological activity, purification and chemical screening

    Directory of Open Access Journals (Sweden)

    Selvameenal L

    2009-01-01

    Full Text Available An actinomycete strain, Streptomyces hygroscopicus subsp. ossamyceticus (strain D10 was isolated from Thar Desert soil, Rajasthan during the year 2006 and found to produce a yellow color pigment with antibiotic activity. Crude pigment was produced from strain D10 by solid state fermentation using wheat bran medium followed by extraction with ethyl acetate. The antimicrobial activity of the crude pigment was evaluated against drug resistant pathogens such as methicillin-resistant Staphylococcus aureus, vancomycin-resistant Staphylococcus aureus, extended spectrum b-lactamase producing cultures of Escherichia coli, Pseudomonas aeruginosa and Klebsiella sp. About 420 mg of crude pigment was produced per 10 g of wheat bran medium. In the disc diffusion method the crude ethyl acetate extract showed a minimum of 10 mm inhibition against Klebsiella sp. and maximum of 19 mm of inhibition against Escherichia coli. The crude pigment was partially purified using thin layer chromatography with the solvent system chloroform:methanol (30:70 and the Rf value was calculated as 0.768. Antimicrobial activity of the partially purified compound from thin layer chromatography was determined using the bioautography method. The purified pigment showed minimum of 15 mm inhibition against Klebsiella sp. and a maximum of 23 mm of inhibition against vancomycin-resistant Staphylococcus aureus in the disc diffusion method. Based on the results of chemical screening, the pigment was tentatively identified as group of sugar containing molecules.

  5. Diversity and Bioactivity of Actinomycetes from Marine Sediments of the Yellow Sea

    Institute of Scientific and Technical Information of China (English)

    ZHANG Shumin; YE Liang; TANG Xuexi

    2012-01-01

    Among the 116 actinomycetes collected from marine sediments of the Yellow Sea,56 grew slowly and appeared after 2-3 weeks of incubation.Among the 56 strains,only 3 required seawater (SW) for growth,and 21 grew well in the medium prepared with SW rather than distilled water (DW),while the remaining 32 grew well either with SW or with DW.Six representatives with different morphological characteristics,including 1 SW-requiring strain and 5 well-growing with SW strains,were selected for phylogenetic analysis based on 16S rRNA gene.Two strains belong to Micrococcaceae and Nocardiopsaceae respectively.The other 4strains belong to the family of Streptomycetaceae.In the analyzed 6 strains,one was related to Nocardiopsis spp.and the other three were related to Streptomyces spp.,representing new taxa.Bioactivity testing of fermentation products from 3 SW-requiring strains and 21 well-growing with SW strains revealed that 17 strains possessed remarkable activities against gram-positive pathogen or/and tumor cells,suggesting that they were prolific resources for natural drug discovery.

  6. 植物内生放线菌多样性研究进展%Research Progress in Diversity of Endophytic Actinomycetes

    Institute of Scientific and Technical Information of China (English)

    冯天祥; 陆可茵; 陆兰依塔; 陈海敏; 盛清

    2015-01-01

    植物内生放线菌作为植物内生菌资源的一大类,具有丰富的多样性,其次级代谢产物也十分丰富,而且还具有各种生物学活性。通过了解植物内生放线菌资源的多样性,可以对其产生的生物活性物质进行筛选和分析,从而筛选出具有良好药理活性的物质应用于临床。从植物内生放线菌宿主植物、组织分布、种类和数量以及活性基因4个方面综述了植物内生放线菌的多样性资源,介绍植物内生放线菌新的微生物物种,总结了植物内生放线菌目前研究中存在的问题及展望。%Endophytic actinomycetes display abundant diversity and have a capacity to produce a huge number of sec-ondary metabolites exhibiting a broad variety of biological activities as a kind of endophyte resources.Biological activi-ties produced by endophytic actinomycetes are screened and analyzed via understanding the biodiversity of endophytic actinomycetes resources so that favorable pharmacological active substances were screened for clinical diseases.Re-cently, with the development of researches about endophytic actinomycetes, many novel microorganism species were reported.This review focuses on diversity resources of endophytic actinomycetes from four aspects:host plants of en-dophytic actinomycetes, distribution in host plants tissue, species and number diversity and active gene and introduces the researches of novel endophytic actinomycetes species.Finally, this article summarizes the problems of endophytic actinomycetes at present researches and gives the possible further research direction.Endophytic actinomycetes which are emerging microbial resources have an important effect on science researches and progress of mankind.

  7. Investigation on Actinomycetes Population in Yuxi Normal University%玉溪师范学院校园内土壤放线菌资源调查

    Institute of Scientific and Technical Information of China (English)

    陈艳; 李淑英; 刘家忠; 李红梅; 陈丽君; 刘菊安

    2012-01-01

    [Objective] Actinomycetes population in Yuxi normal university was investigated to provide information on the development and the utilization of actinomycetes resource. [Method] Ten soil samples from plant rhizosphere in Yuxi normal university were collected. Actinomycetes were isolated by spreading the samples on Gao 1 agar medium. Isolaets were identified at genus level.[Result] The number of actinomycetes was different in different plant rhizosphere. Streptomyces dominated. [Conclusion] Actinomycetes populations were rich in the soil of Yuxi normal university. Streptomyces dominated, mainly for the inerogriseus and the griseofuscus.%[目的]调查玉溪师范学院校园内土壤的放线菌资源,为云南放线菌资源开发利用提供资料.[方法]从玉溪师范学院校园内采集10种植物根际土壤,采用涂布平板法分离,用高氏一号培养基培养,采用国内通用的方法进行鉴定.[结果]不同植物根际分离到的放线菌数量不同;链霉菌占绝对优势.[结论]玉溪师院校园内土壤中放线菌资源丰富,链霉菌占绝对优势,主要为烬灰类群、灰褐类群.

  8. Streptomyces formicae sp. nov., a novel actinomycete isolated from the head of Camponotus japonicus Mayr.

    Science.gov (United States)

    Bai, Lu; Liu, Chongxi; Guo, Lifeng; Piao, Chenyu; Li, Zhilei; Li, Jiansong; Jia, Feiyu; Wang, Xiangjing; Xiang, Wensheng

    2016-02-01

    During a screening for novel and biotechnologically useful actinobacteria in insects, a novel actinomycete with antifungal activity, designated strain 1H-GS9(T), was isolated from the head of a Camponotus japonicus Mayr ant, which were collected from Northeast Agricultural University (Harbin, Heilongjiang, China). Strain 1H-GS9(T) was characterised using a polyphasic approach. The organism was found to have morphological and chemotaxonomic characteristics typical of members of the genus Streptomyces. 16S rRNA gene sequence similarity studies showed that strain 1H-GS9(T) belongs to the genus Streptomyces with high sequence similarities to Streptomyces scopuliridis DSM 41917(T) (98.8 %) and Streptomyces mauvecolor JCM 5002(T) (98.6 %). However, phylogenetic analysis based on the 16S rRNA gene sequence indicated that it forms a monophyletic clade with Streptomyces kurssanovii JCM 4388(T) (98.6 %), Streptomyces xantholiticus JCM 4282(T) (98.6 %) and Streptomyces peucetius JCM 9920(T) (98.5 %). Thus, a combination of DNA-DNA hybridization experiments and phenotypic tests were carried out between strain 1H-GS9(T) and the above-mentioned five strains, which further clarified their relatedness and demonstrated that strain 1H-GS9(T) could be distinguished from these strains. Therefore, the strain is concluded to represent a novel species of the genus Streptomyces, for which the name Streptomyces formicae sp. nov. is proposed. The type strain is 1H-GS9(T) (=CGMCC 4.7277(T) = DSM 100524(T)). PMID:26608172

  9. Rare actinomycetes Nocardia caishijiensis and Pseudonocardia carboxydivorans as endophytes, their bioactivity and metabolites evaluation.

    Science.gov (United States)

    Tanvir, Rabia; Sajid, Imran; Hasnain, Shahida; Kulik, Andreas; Grond, Stephanie

    2016-04-01

    Two strains identified as Nocardia caishijiensis (SORS 64b) and Pseudonocardia carboxydivorans (AGLS 2) were isolated as endophytes from Sonchus oleraceus and Ageratum conyzoides respectively. The analysis of their extracts revealed them to be strongly bioactive. The N. caishijiensis extract gave an LC50 of 570 μg/ml(-1) in the brine shrimp cytotoxicity assay and an EC50 of 0.552 μg/ml(-1) in the DPPH antioxidant assay. Antimicrobial activity was observed against Methicillin resistant Staphlococcus aureus (MRSA) and Escherichia coli ATCC 25922 (14 mm), Klebsiella pneumoniae ATCC 706003 (13 mm), S. aureus ATCC 25923 (11 mm) and Candida tropicalis (20 mm). For the extract of P. carboxydivorans the EC50 was 0.670 μg/ml(-1) and it was observed to be more bioactive against Bacillus subtilis DSM 10 ATCC 6051 (21 mm), C. tropicalis (20 mm), S. aureus ATCC 25923 (17 mm), MRSA (17 mm), E. coli K12 (W1130) (16 mm) and Chlorella vulgaris (10 mm). The genotoxicity testing revealed a 20 mm zone of inhibition against the polA mutant strain E. coli K-12 AB 3027 suggesting damage to the DNA and polA genes. The TLC and bioautography screening revealed a diversity of active bands of medium polar and nonpolar compounds. Metabolite analysis by HPLC-DAD via UV/vis spectral screening suggested the possibility of stenothricin and bagremycin A in the mycelium extract of N. caishijiensis respectively. In the broth and mycelium extract of P. carboxydivorans borrelidin was suggested along with α-pyrone. The HPLC-MS revealed bioactive long chained amide derivatives such as 7-Octadecenamide, 9, 12 octadecandienamide. This study reports the rare actinomycetes N. caishijiensis and P. carboxydivorans as endophytes and evaluates their bioactive metabolites. PMID:26946375

  10. Sphaerisporangium dianthi sp. nov., an endophytic actinomycete isolated from a root of Dianthus chinensis L.

    Science.gov (United States)

    Xing, Jia; Liu, Chongxi; Zhang, Yuejing; He, Hairong; Zhou, Ying; Li, Lianjie; Zhao, Junwei; Liu, Shuanghe; Wang, Xiangjing; Xiang, Wensheng

    2015-01-01

    A novel actinomycete, designated strain NEAU-CY18(T), was isolated from the root of a Chinese medicinal plant Dianthus chinensis L and subjected to a polyphasic taxonomic study. The novel strain was found to develop spherical sporangia with non-motile spores on aerial mycelium. The cell-wall peptidoglycan was found to contain meso-diaminopimelic acid. The whole-cell sugars were identified as madurose, mannose, ribose, galactose and glucose. The phospholipid profile was found to contain diphosphatidylglycerol, phosphatidylmethylethanolamine, phosphatidylethanolamine, hydroxy-phosphatidylmethylethanolamine, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannosides and an unidentified phospholipid. The predominant menaquinones were identified as MK-9(H4), MK-9(H2) and MK-9(H6). The major fatty acids were identified as C17:0 10-methyl, iso-C16:0 and C16:0. EzTaxon-e analysis of the 16S rRNA gene sequence indicated that the strain belongs to the genus Sphaerisporangium and was most closely related to Sphaerisporangium cinnabarinum JCM 3291(T) (98.9 %) and Sphaerisporangium melleum JCM 13064(T) (98.3 %). Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain NEAU-CY18(T) forms a monophyletic clade with S. cinnabarinum JCM 3291(T), an association that was supported by a bootstrap value of 97 % in the neighbour-joining tree and also recovered with the maximum-likelihood algorithm. Comparisons of some phenotypic properties and low DNA-DNA relatedness values enabled the strain to be differentiated from S. cinnabarinum JCM 3291(T) and S. melleum JCM 13064(T). Therefore, it is concluded that strain NEAU-CY18(T) represents a novel Sphaerisporangium species, for which the name Sphaerisporangium dianthi sp. nov. is proposed. The type strain is NEAU-CY18(T) ( = CGMCC 4.7132(T) = DSM 46736(T)).

  11. Streptomyces zhaozhouensis sp. nov., an actinomycete isolated from candelabra aloe (Aloe arborescens Mill).

    Science.gov (United States)

    He, Hairong; Liu, Chongxi; Zhao, Junwei; Li, Wenjun; Pan, Tong; Yang, Lingyu; Wang, Xiangjing; Xiang, Wensheng

    2014-04-01

    A novel endophytic actinomycete, designated strain NEAU-LZS-5(T), was isolated from the leaf of candelabra aloe (Aloe arborescens Mill) and characterized using a polyphasic approach. Analysis of the 16S rRNA gene sequence showed that strain NEAU-LZS-5(T) belongs to the genus Streptomyces and exhibited 99.51 and 97.37 % similarity to Streptomyces sedi YIM 65188(T) and Streptomyces specialis GW41-1564(T), respectively, whereas low similarity values (<97 %) distinguished strain NEAU-LZS-5(T) from all other species of the genus Streptomyces with validly published names. Two tree-making algorithms also supported the position that strain NEAU-LZS-5(T) formed a distinct clade with Streptomyces sedi YIM 65188(T) and Streptomyces specialis GW41-1564(T). However, levels of DNA-DNA relatedness between strain NEAU-LZS-5(T) and Streptomyces sedi YIM 65188(T) and Streptomyces specialis GW41-1564(T) were 45.59 and 31.90 %, respectively. A comparative study between strain NEAU-LZS-5(T) and the type strains of closest related species of the genus Streptomyces revealed that it differed from them in morphological, physiological and biochemical characteristics. Therefore, strain NEAU-LZS-5(T) represents a novel species of the genus Streptomyces, for which the name Streptomyces zhaozhouensis sp. nov. is proposed. The type strain is NEAU-LZS-5(T) ( = CGMCC 4.7095(T) = DSM 42101(T)). PMID:24368691

  12. Diketopiperazine Derivatives from the Marine-Derived Actinomycete Streptomyces sp. FXJ7.328

    Directory of Open Access Journals (Sweden)

    Weiming Zhu

    2013-03-01

    Full Text Available Five new diketopiperazine derivatives, (3Z,6E-1-N-methyl-3-benzy lidene-6-(2S-methyl-3-hydroxypropylidenepiperazine-2,5-dione (1, (3Z,6E-1-N-methyl-3-benzylidene-6-(2R-methyl-3-hydroxypropylidenepiperazine-2,5-dione (2, (3Z,6Z-3- (4-hydroxybenzylidene-6-isobutylidenepiperazine-2,5-dione (3, (3Z,6Z-3-((1H-imidazol-5-yl-methylene-6-isobutylidenepiperazine-2,5-dione (4, and (3Z,6S-3-benzylidene-6-(2S-but-2-ylpiperazine-2,5-dione (5, were isolated from the marine-derived actinomycete Streptomyces sp. FXJ7.328. The structures of 1–5 were determined by spectroscopic analysis, CD exciton chirality, the modified Mosher’s, Marfey’s and the C3 Marfey’s methods. Compound 3 showed modest antivirus activity against influenza A (H1N1 virus with an IC50 value of 41.5 ± 4.5 μM. In addition, compound 6 and 7 displayed potent anti-H1N1 activity with IC50 value of 28.9 ± 2.2 and 6.8 ± 1.5 μM, respectively. Due to the lack of corresponding data in the literature, the 13C NMR data of (3Z,6S-3-benzylidene-6-isobutylpiperazine-2,5-dione (6 were also reported here for the first time.

  13. In Vitro and In Vivo Plant Growth Promoting Activities and DNA Fingerprinting of Antagonistic Endophytic Actinomycetes Associates with Medicinal Plants.

    Science.gov (United States)

    Passari, Ajit Kumar; Mishra, Vineet Kumar; Gupta, Vijai Kumar; Yadav, Mukesh Kumar; Saikia, Ratul; Singh, Bhim Pratap

    2015-01-01

    Endophytic actinomycetes have shown unique plant growth promoting as well as antagonistic activity against fungal phytopathogens. In the present study forty-two endophytic actinomycetes recovered from medicinal plants were evaluated for their antagonistic potential and plant growth-promoting abilities. Twenty-two isolates which showed the inhibitory activity against at least one pathogen were subsequently tested for their plant-growth promoting activities and were compared genotypically using DNA based fingerprinting, including enterobacterial repetitive intergenic consensus (ERIC) and BOX repetitive elements. Genetic relatedness based on both ERIC and BOX-PCR generates specific patterns corresponding to particular genotypes. Exponentially grown antagonistic isolates were used to evaluate phosphate solubilization, siderophores, HCN, ammonia, chitinase, indole-3-acetic acid production, as well as antifungal activities. Out of 22 isolates, the amount of indole-3-acetic acid (IAA) ranging between 10-32 μg/ml was produced by 20 isolates and all isolates were positive for ammonia production ranging between 5.2 to 54 mg/ml. Among 22 isolates tested, the amount of hydroxamate-type siderophores were produced by 16 isolates ranging between 5.2 to 36.4 μg/ml, while catechols-type siderophores produced by 5 isolates ranging from 3.2 to 5.4 μg/ml. Fourteen isolates showed the solubilisation of inorganic phosphorous ranging from 3.2 to 32.6 mg/100ml. Chitinase and HCN production was shown by 19 and 15 different isolates, respectively. In addition, genes of indole acetic acid (iaaM) and chitinase (chiC) were successively amplified from 20 and 19 isolates respectively. The two potential strains Streptomyces sp. (BPSAC34) and Leifsonia xyli (BPSAC24) were tested in vivo and improved a range of growth parameters in chilli (Capsicum annuum L.) under greenhouse conditions. This study is the first published report that actinomycetes can be isolated as endophytes from within these

  14. In Vitro and In Vivo Plant Growth Promoting Activities and DNA Fingerprinting of Antagonistic Endophytic Actinomycetes Associates with Medicinal Plants.

    Directory of Open Access Journals (Sweden)

    Ajit Kumar Passari

    Full Text Available Endophytic actinomycetes have shown unique plant growth promoting as well as antagonistic activity against fungal phytopathogens. In the present study forty-two endophytic actinomycetes recovered from medicinal plants were evaluated for their antagonistic potential and plant growth-promoting abilities. Twenty-two isolates which showed the inhibitory activity against at least one pathogen were subsequently tested for their plant-growth promoting activities and were compared genotypically using DNA based fingerprinting, including enterobacterial repetitive intergenic consensus (ERIC and BOX repetitive elements. Genetic relatedness based on both ERIC and BOX-PCR generates specific patterns corresponding to particular genotypes. Exponentially grown antagonistic isolates were used to evaluate phosphate solubilization, siderophores, HCN, ammonia, chitinase, indole-3-acetic acid production, as well as antifungal activities. Out of 22 isolates, the amount of indole-3-acetic acid (IAA ranging between 10-32 μg/ml was produced by 20 isolates and all isolates were positive for ammonia production ranging between 5.2 to 54 mg/ml. Among 22 isolates tested, the amount of hydroxamate-type siderophores were produced by 16 isolates ranging between 5.2 to 36.4 μg/ml, while catechols-type siderophores produced by 5 isolates ranging from 3.2 to 5.4 μg/ml. Fourteen isolates showed the solubilisation of inorganic phosphorous ranging from 3.2 to 32.6 mg/100ml. Chitinase and HCN production was shown by 19 and 15 different isolates, respectively. In addition, genes of indole acetic acid (iaaM and chitinase (chiC were successively amplified from 20 and 19 isolates respectively. The two potential strains Streptomyces sp. (BPSAC34 and Leifsonia xyli (BPSAC24 were tested in vivo and improved a range of growth parameters in chilli (Capsicum annuum L. under greenhouse conditions. This study is the first published report that actinomycetes can be isolated as endophytes from

  15. Complete genome sequence of Kibdelosporangium phytohabitans KLBMP 1111(T), a plant growth promoting endophytic actinomycete isolated from oil-seed plant Jatropha curcas L.

    Science.gov (United States)

    Qin, Sheng; Feng, Wei-Wei; Xing, Ke; Bai, Juan-Luan; Yuan, Bo; Liu, Wei-Jie; Jiang, Ji-Hong

    2015-12-20

    Kibdelosporangium phytohabitans KLBMP 1111(T) is a plant growth promoting endophytic actinomycete isolated from the oil-seed plant Jatropha curcas L. collected from dry-hot valley, in Sichuan, China. The complete genome sequence of this actinomycete consists of one chromosome (11,759,770bp) with no plasmid. From the genome, we identified gene clusters responsible for polyketide and nonribosomal peptide synthesis of natural products, and genes related to the plant growth promoting, such as zeatin, 1-aminocyclopropane-1-carboxylate deaminase (ACCD) and siderophore. The complete genome information may be useful to understand the beneficial interactions between K. phytohabitans KLBMP 1111(T) and host plants. PMID:26516119

  16. Research Progress of Active Metabolite of Marine Actinomycetes%海洋放线菌活性代谢产物的研究进展

    Institute of Scientific and Technical Information of China (English)

    宗志友; 魏刚; 斯聪聪; 王莹

    2011-01-01

    The research background of marine actinomycetes are briefly introduced in this paper. The research progresses of the active metabolite of marine actinomycetes in recent years are summarized and these metabolites are discussed individually according to their structures.%简要介绍了海洋放线菌的研究背景,重点对近年来发现的由海洋放线菌产生的活性代谢产物的研究进展作一概述,并对这些代谢产物依据其结构进行分类概述.

  17. Characterization of three amidinotransferases involved in the biosynthesis of ketomemicins.

    Science.gov (United States)

    Ogasawara, Yasushi; Fujimori, Michiko; Kawata, Junpei; Dairi, Tohru

    2016-08-01

    We recently reported a novel class of amide bond forming enzymes (peptide ligases) involved in the biosynthesis of pheganomycins, resorcinomycins and ketomemicins. This class of enzymes exclusively utilizes Nα-amidino amino acids as the N-terminal substrate. In this Letter, we characterized three new amidinotransferases involved in the biosynthesis of ketomemicins and showed that l-arginine was the amidino-acceptor of amidinotransferases in both the Micromonospora sp. and Streptomyces mobaraensis clusters, while the Salinispora tropica enzyme recognized l-valine. Unexpectedly, the S. tropica enzyme accepted several different amino acids as amidino acceptors in addition to l-valine. Accordingly, we re-investigated the specific metabolites governed by the gene cluster of S. tropica and identified several minor congeners of ketomemicin C with different N-terminal amidino-amino acids. These results indicate that the amidinotransferase of S. tropica is promiscuous and could be useful to generate new ketomemicin-type natural products. PMID:27289319

  18. Effect of crude extracts of selected actinomycetes on biofilm formation of A. schindleri, M. aci, and B. cereus.

    Science.gov (United States)

    Saleem, Hafiz Ghulam Murtaza; Aftab, Usman; Sajid, Imran; Abbas, Zaigham; Sabri, Anjum Nasim

    2015-05-01

    Actinomycetes are well known group of gram positive bacteria for their potential to produce antibiotics. This study sought to assess the ability of the selected actinomycetes to control biofilm forming bacteria isolated from different dental plaque samples. On the basis of morphological differences three out of ten different dental plaque bacterial isolates were selected for further study. These isolates were biochemically and genetically characterized and were identified as Acinetobacter schinndleri, Moraxella aci, and Bacillus cereus. Antibiotic resistant profile was measured through disc diffusion method and found that all three isolates were moderately sensitive to ofloxacin and erythromycin and resistant to trimethoprim. Antibacterial activity of ten different Streptomyces strains was assessed through an agar plug and well diffusion method against three dental biofilm forming bacteria. Two Streptomyces strains named as S. erythrogriseus and S. labedae showed good antibacterial activity against Moraxella and Acinetobacter strains. Ability of the four active antibiotic producing strains to inhibit biofilm formation was assessed using microtiter biofilm detection assay. It was found that biofilm forming ability of Acinetobacter and Moraxella was inhibited by S. labedae an antibiotic producing strain, while S. macrosporeus can only inhibit biofilm formation by B. cereus.

  19. Isolation and evaluation of proteolytic actinomycete isolates as novel inducers of pearl millet downy mildew disease protection

    Science.gov (United States)

    Jogaiah, Sudisha; Kurjogi, Mahantesh; Govind, Sharathchandra Ramasandra; Huntrike, Shekar Shetty; Basappa, Vedamurthy Ankala; Tran, Lam-Son Phan

    2016-01-01

    Native endophytic actinomycetes isolated from pearl millet roots were examined for their efficacy to protect pearl millet against downy mildew. Nineteen of 39 isolates were found to be proteolytic, of which 7 strains could directly suppress the sporangium formation of Sclerospora graminicola, the pearl millet downy mildew pathogen. Thus, mycelial suspensions containing either spores or cell-free extract of these 7 isolates were used for seed-coating and -soaking treatments to test for their induction of downy mildew resistance. Results indicated that seed-coating overall provided better protection to downy mildew than seed-soaking. In both treatments, the tested isolates demonstrated differential abilities in downy mildew disease protection, with Streptomyces griseus SJ_UOM-07-09 and Streptosporangium roseum SJ_UOM-18-09 showing the highest protection rates. Additionally, the levels of disease protection conferred by the actinomycetes were just slightly lower than that of the systemic fungicide Apron, suggesting their effectiveness. Further studies revealed that the more rapid root colonization by SJ_UOM-18-09 resulted in faster and higher induced resistance in comparison with SJ_UOM-07-09 under greenhouse conditions, indicating that SJ_UOM-18-09 was superior than SJ_UOM-07-09 in inducing resistance. Results from this study provide comprehensive information on biocontrol functions of SJ_UOM- 18-09 with great potential to control downy mildew disease in pearl millet. PMID:27499196

  20. Cytotoxicity of actinomycetes associated with the ascidian Eudistoma vannamei (Millar, 1977, endemic of northeastern coast of Brazil

    Directory of Open Access Journals (Sweden)

    Paula C Jimenez

    2013-04-01

    Full Text Available Previous studies demonstrated that the crude extract of the ascidian Eudistoma vannamei, endemic from northeasttern Brazil, strongly hinders growth of tumor cells in vitro by inducing apoptosis due to tryptophan derivatives, which are commonly found in bacteria. This study presents a bioactivity-guided screening among actinomycetes, associated with E. vannamei, aiming at recognizing active principles with biological relevance. Twenty strains of actinomycetes, designated as EVA 0101 through 0120, were isolated from colonies of E. vannamei among which 11 were selected for cytotoxicity evaluation. The extracts from EVA 0102, 0103, 0106, 0109 and 0113 were the most active, and were further studied for IC50 determination and chemical analysis by ¹H NMR. IC50 values obtained ranged from 3.62 µg mL-1 (for EVA 0109 in leukemia cells to 84.65 µg/mL (for EVA 0106 in melanoma cells. All active extracts exhibited the same TLC and spectroscopic profiles, suggesting the presence of quinones and other related secondary metabolites. Furthermore, these strains were identified and compared based on their respective 16S rRNA sequences. The results herein identified the five strains as Micromonospora spp. while phylogenetic analysis suggests that they are possibly two different Micromonospora species producing the cytotoxic compounds.

  1. Saccharopolyspora subtropica sp. nov., a thermophilic actinomycete isolated from soil of a sugar cane field.

    Science.gov (United States)

    Wu, Hao; Liu, Bin; Pan, Shangli

    2016-05-01

    A novel thermophilic actinomycete, designated strain T3T, was isolated from a soil sample of a sugar cane field. The strain grew at 25-60 °C (optimum 37-50 °C), at pH 6.0-11.0 (optimum 7.0-9.0) and with 0-12.0 % (w/v) NaCl (optimum 0-7 %). The aerial mycelium was white and the vegetative mycelium was colourless to pale yellow. The substrate mycelium fragmented into rod-shaped elements after 4-5 days at 50 °C. The aerial mycelium formed flexuous chains of 5-20 spores per chain; the oval-shaped spores had spiny surfaces and were non-motile. The organism contained meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan. The whole-cell sugars consisted of arabinose, galactose and ribose. The cellular fatty acid profile consisted mainly of anteiso-C17 : 0, iso-C17 : 0 and iso-C16 : 0. The quinone system was composed predominantly of MK-9(H4). The phospholipids detected were diphosphatidylglycerol, phosphatidylcholine, phosphatidylinositol, phosphatidylethanolamine, phosphatidylmethylethanolamine and ninhydrin-positive glycophospholipids. The DNA G+C content of strain T3T was 71.3 mol%. The organism showed a combination of morphological and chemotaxonomic properties typical of members of the genus Saccharopolyspora. In the 16S rRNA gene tree of Saccharopolyspora it formed a distinct phyletic line and was related most closely to Saccharopolyspora thermophila 216T. However, the phenotypic characteristics of strain T3T were significantly different from those of S. thermophila 216T and DNA-DNA hybridization revealed a low level of relatedness (28.6-32.3 %) between them. Based on the phenotypic and phylogenetic data, strain T3T represents a novel species in the genus Saccharopolyspora, for which the name Saccharopolyspora subtropica sp. nov. is proposed. The type strain is T3T ( = DSM 46801T = CGMCC 4.7206T). PMID:26882893

  2. Pharmaceutical composition to protect an animal against a disorder arising from an infection with a bacterium that belongs to the group of nocardioform actinomycetes

    NARCIS (Netherlands)

    Arnoldus, Christiaan Jacobs; van der Geize, Robert; Dijkhuizen, Lubbert

    2011-01-01

    The invention pertains to a pharmaceutical composition to protect an animal against a disorder arising from an infection with a bacterium that belongs to the group of nocardioform actinomycetes having the ability to survive within macrophages of the animal, comprising live bacteria of a nocardioform

  3. Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules

    Energy Technology Data Exchange (ETDEWEB)

    Hirsch, A. M.; Alvarado, J.; Bruce, D.; Chertkov, O.; De Hoff, P. L.; Detter, J. C.; Fujishige, N. A.; Goodwin, L. A.; Han, J.; Han, S.; Ivanova, N.; Land, M. L.; Lum, M. R.; Milani-Nejad, N.; Nolan, M.; Pati, A.; Pitluck, S.; Tran, S. S.; Woyke, T.; Valdes, M.

    2013-08-29

    Micromonospora species live in diverse environments and exhibit a broad range of functions including antibiotic production, biocontrol, and ability to degrade complex polysaccharides. To learn more about these versatile actinomycetes, we sequenced the genome of strain L5, originally isolated from root nodules of an actinorhizal plant growing in Mexico.

  4. XML In Vitro Comparison of MIC Crude Extracts of Active Actinomycetes Isolated with Terbinafine, Griseofulvin Ketoconazole and Fluconazole against Microsporum Canis, Microsporum Gypseum and Trichophyton Mentagrophytes

    Directory of Open Access Journals (Sweden)

    Keikha, N. (MSc

    2015-05-01

    Full Text Available Background and Objective: Dermatophytes are the fungi that have the ability to attack the keratinized tissues such as the skin, hair and nails. Infections caused by these organisms are named dermatophytosis. We aimed to compare Minimum inhibitory concentration (MIC of Crude extracts of Active Actinomycete Isolates with Terbinafine, Griseofulvin, Ketoconazole and Fluconazole Drugs against Microsporum Canis, Microsporum gypseum and Trichophyton mentagrophytes. Material and Methods: In this experimental study, in order to find MIC by actionmycete, 100 isolates were studied and then crude extracts of the active actinomycete isolates were prepared in sterile conditions. Finally, the crude extracts obtained at different concentrations were used to obtain the MIC of Microsporum Canis, Microsporum gypseum and Trichophyton mentagrophytes. Moreover, various concentrations of the drugs such as terbinafine, griseofulvin, ketoconazole and fluconazole in solvent Dimethyl sulfoxide (DMSO were prepared and their growth inhibitory effect was evaluated and then compared with the results obtained from the crude extract of active actinomycete isolates. Results: the crude extracts obtained from active Actioiomycetes isolates and the drugs such as terbinafine, griseofulvin, ketoconazole and fluconazole, in a dose-dependent manner, could inhibit the growth of Microsporum Canis, Microsporum gypseum and Trichophyton Mentagrophytes. Conclusion: compared to MIC of Crude extract of active actinomycete isolates, Terbinafine has a significant effect on the growth inhibition in all of the fungal Dermatophytes and then griseofulvin, ketoconazole and fluconazole are in the next rank, respectively.

  5. Isolation, abundance and phylogenetic affiliation of endophytic actinomycetes associated with medicinal plants and screening for their in vitro antimicrobial biosynthetic potential.

    Science.gov (United States)

    Passari, Ajit K; Mishra, Vineet K; Saikia, Ratul; Gupta, Vijai K; Singh, Bhim P

    2015-01-01

    Microorganisms associated with medicinal plants are of interest as the producers of important bioactive compounds. To date, the diversity of culturable endophytic actinomycetes associated with medicinal plants is in its initial phase of exploration. In this study, 42 endophytic actinomycetes were isolated from different organs of seven selected medicinal plants. The highest number of isolates (n = 22, 52.3%) of actinomycetes was isolated from roots, followed by stems (n = 9, 21.4%), leaves (n = 6, 14.2%), flowers (n = 3, 7.1%), and petioles (n = 2, 4.7%). The genus Streptomyces was the most dominant among the isolates (66.6%) in both the locations (Dampa TRF and Phawngpuii NP, Mizoram, India). From a total of 42 isolates, 22 isolates were selected for further studies based on their ability to inhibit one of the tested human bacterial or fungal pathogen. Selected isolates were identified based on 16S rRNA gene analysis and subsequently the isolates were grouped to four different genera; Streptomyces, Brevibacterium, Microbacterium, and Leifsonia. Antibiotic sensitivity assay was performed to understand the responsible antimicrobials present in the isolates showing the antimicrobial activities and revealed that the isolates were mostly resistant to penicillin G and ampicillin. Further, antimicrobial properties and antibiotic sensitivity assay in combination with the results of amplification of biosynthetic genes polyketide synthase (PKS-I) and non-ribosomal peptide synthetase (NRPS) showed that the endophytic actinomycetes associated with the selected medicinal plants have broad-spectrum antimicrobial activity. This is the first report of the isolation of Brevibacterium sp., Microbacterium sp., and Leifsonia xyli from endophytic environments of medicinal plants, Mirabilis jalapa and Clerodendrum colebrookianum. Our results emphasize that endophytic actinomycetes associated with medicinal plants are an unexplored resource for the discovery of biologically active

  6. Metagenomic of Actinomycetes Based on 16S rRNA and nifH Genes in Soil and Roots of Four Indonesian Rice Cultivars Using PCR-DGGE

    Directory of Open Access Journals (Sweden)

    Mahyarudin

    2015-07-01

    Full Text Available The research was conducted to study the metagenomic of actinomycetes based on 16S ribosomal RNA (rRNA and bacterial nifH genes in soil and roots of four rice cultivars. The denaturing gradient gel electrophoresis profile based on 16S rRNA gene showed that the diversity of actinomycetes in roots was higher than soil samples. The profile also showed that the diversity of actinomycetes was similar in four varieties of rice plant and three types of agroecosystem. The profile was partially sequenced and compared to GenBank database indicating their identity with closely related microbes. The blast results showed that 17 bands were closely related ranging from 93% to 100% of maximum identity with five genera of actinomycetes, which is Geodermatophilus, Actinokineospora, Actinoplanes, Streptomyces and Kocuria. Our study found that Streptomyces species in soil and roots of rice plants were more varied than other genera, with a dominance of Streptomyces alboniger and Streptomyces acidiscabies in almost all the samples. Bacterial community analyses based on nifH gene denaturing gradient gel electrophoresis showed that diversity of bacteria in soils which have nifH gene was higher than that in rice plant roots. The profile also showed that the diversity of those bacteria was similar in four varieties of rice plant and three types of agroecosystem. Five bands were closely related with nifH gene from uncultured bacterium clone J50, uncultured bacterium clone clod-38, and uncultured bacterium clone BG2.37 with maximum identity 99%, 98%, and 92%, respectively. The diversity analysis based on 16S rRNA gene differed from nifH gene and may not correlate with each other. The findings indicated the diversity of actinomycetes and several bacterial genomes analyzed here have an ability to fix nitrogen in soil and roots of rice plant.

  7. Isolation, abundance and phylogenetic affiliation of endophytic actinomycetes associated with medicinal plants and screening for their in vitro antimicrobial biosynthetic potential

    Directory of Open Access Journals (Sweden)

    Ajit Kumar Passari

    2015-04-01

    Full Text Available Microorganisms associated with medicinal plants are of interest as the producers of important bioactive compounds. To date, the diversity of culturable endophytic actinomycetes associated with medicinal plants is in its initial phase of exploration. In this study, 42 endophytic actinomycetes were isolated from different organs of seven selected medicinal plants. The highest number of isolates (n=22, 52.3% of actinomycetes was isolated from roots, followed by stems (n=9, 21.4%, leaves (n=6, 14.2%, flowers (n=3, 7.1% and petioles (n=2, 4.7%. The genus Streptomyces was the most dominant among the isolates (66.6% in both the locations (Dampa TRF and Phawngpuii NP, Mizoram, India. From a total of 42 isolates, 22 isolates were selected for further studies based on their ability to inhibit one of the tested human bacterial or fungal pathogen. Selected isolates were identified based on 16S rRNA gene analysis and subsequently the isolates were grouped to four different genera; Streptomyces, Brevibacterium, Microbacterium and Leifsonia. Antibiotic sensitivity assay was performed to understand the responsible antimicrobials present in the isolates showing the antimicrobial activities and revealed that the isolates were mostly resistant to penicillin G and ampicillin. Further, antimicrobial properties and antibiotic sensitivity assay in combination with the results of amplification of biosynthetic genes polyketide synthase (PKS-I and nonribosomal peptide synthetase (NRPS showed that the endophytic actinomycetes associated with the selected medicinal plants have broad-spectrum antimicrobial activity. This is the first report of the isolation of Brevibacterium sp., Microbacterium sp. and Leifsonia xyli from endophytic environments of medicinal plants, Mirabilis jalapa and Clerodendrum colebrookianum. Our results emphasize that endophytic actinomycetes associated with medicinal plants are an unexplored resource for the discovery of biologically active

  8. Genome sequence of a new Streptomyces coelicolor generalized transducing bacteriophage, ΦCAM.

    Science.gov (United States)

    Monson, Rita; Salmond, George P C

    2012-12-01

    Streptomyces coelicolor is a model system for the study of Streptomyces, a genus of bacteria responsible for the production of many clinically important antibiotics. Here we report the genome sequence of ΦCAM, a new S. coelicolor generalized transducing bacteriophage, isolated from a soil sample originating from Lincolnshire, United Kingdom. Many open reading frames within ΦCAM shared high levels of similarity to a prophage from Salinispora tropica and a putative prophage in Streptomyces sp. strain C.

  9. Investigations into the biosynthesis of salinosporamide A : new insights on PKS extender units and the origin of a nonproteinogenic amino acid

    OpenAIRE

    Liu, Yuan

    2010-01-01

    Salinosporamide A, a highly bioactive [beta]-lactone from the marine bacterium Salinispora tropica, originates from three biosynthetic building blocks, namely acetate, chloroethylmalonyl-CoA, and the nonproteinogenic amino acid cyclohexenylalanine. The unexpected and unprecedented pathway to chloroethylmalonyl-CoA was illuminated by a multidisciplinary approach involving genetics, organic synthesis, and protein biochemistry, where S-adenosyl-L- methionine (SAM) is converted to chloroethylmalo...

  10. Specificity of the mutualistic association between actinomycete bacteria and two sympatric species of Acromyrmex leaf-cutting ants

    DEFF Research Database (Denmark)

    Poulsen, M; Cafaro, M; Boomsma, J J;

    2005-01-01

    Acromyrmex leaf-cutting ants maintain two highly specialized, vertically transmitted mutualistic ectosymbionts: basidiomycete fungi that are cultivated for food in underground gardens and actinomycete Pseudonocardia bacteria that are reared on the cuticle to produce antibiotics that suppress...... the growth of Escovopsis parasites of the fungus garden. Mutualism stability has been hypothesized to benefit from genetic uniformity of symbionts, as multiple coexisting strains are expected to compete and, thus, reduce the benefit of the symbiosis. However, the Pseudonocardia symbionts are likely...... to be involved in Red-Queen-like antagonistic co-evolution with Escovopsis so that multiple strains per host might be favoured by selection provided the cost of competition between bacterial strains is low. We examined the genetic uniformity of the Pseudonocardia symbionts of two sympatric species of Acromyrmex...

  11. Characterization and phylogenetic analysis of novel polyene type antimicrobial metabolite producing actinomycetes from marine sediments:Bay of Bengal India

    Institute of Scientific and Technical Information of China (English)

    Valan Arasu M; Asha KRT; Duraipandiyan V; Ignacimuthu S; Agastian P

    2012-01-01

    To isolate and indentify the promising antimicrobial metabolite producingStreptomyces strains from marine sediment samples from Andrapradesh coast of India. Methods:Antagonistic actinomycetes were isolated by starch casein agar medium and modified nutrient agar medium with 1% glucose used as a base for primary screening. Significant antimicrobial metabolite producing strains were selected and identified by using biochemical and 16S rDNA level. Minimum inhibitory concentrations of the organic extracts were done by using broth micro dilution method. Results: Among the 210 actinomycetes, 64.3% exhibited activity against Gram positive bacteria, 48.5 % showed activity towards Gram negative bacteria, 38.8% exhibited both Gram positive and negative bacteria and 80.85 % isolates revealed significant antifungal activity. However, five isolates AP-5, AP-18, AP-41 and AP-70 showed significant antimicrobial activity. The analysis of cell wall hydrolysates showed the presence of LL-diaminopimelic acid and glycine in all the isolates. Sequencing analysis indicated that the isolates shared 98.5%-99.8%sequence identity to the 16S rDNA gene sequences of the Streptomyces taxons. The antimicrobial substances were extracted using hexane and ethyl acetate from spent medium in which strains were cultivated at 30℃for five days. The antimicrobial activity was assessed using broth micro dilution technique. Each of the culture extracts from these five strains showed a typical polyene-like property. The lowest minimum inhibitory concentrations of ethyl acetate extracts against Escherichia coli and Curvularia lunata were 67.5 and 125.0 μg/mL, respectively. Conclusions: It can be concluded that hexane and ethyl acetate soluble extracellular products of novel isolates are effective against pathogenic bacteria and fungi.

  12. Screening and Identifying of Antagonistic Actinomycetes against Ralstonia Solancearum%烟草青枯菌拮抗放线菌的筛选及鉴定

    Institute of Scientific and Technical Information of China (English)

    陆铮铮; 彭丽娟; 丁海霞; 左希; 彭杰; 蒋选利

    2013-01-01

    In order to select effective antagonistic actinomycetes against Ralstonia solanacearum, we isolated 56 strains of actinomycetes from healthy tobacco rhizosphere soils. By pairing culture on plate method to screen antagonistic actinomycetes, we attained 3 strains of antagonistic actinomycetes, whose average inhibition diameters were more than 20 mm. We identified 3 strains of actinomycetes according to culture characteristics on differential culture mediums, spore and spore chain morphology, physiological and biochemical, molecular biology methods. The results showed that the 3 strains of actinomycetes were Streptomyces roseofulvus, Streptomyces olivaceoviridis and Streptomyces corchorusii. Among them, the best was S. roseofulvus, and average inhibition diameter was 54.66 mm. Average inhibition diameter of S.olivaceoviridis was 43.20 mm, and average inhibition diameter of S. corchorusii was 20.34 mm.%  为筛选出烟草青枯菌的有效拮抗菌,本研究从烟草根围土壤中分离了97株放线菌,通过平板对峙培养法筛选出抑菌圈直径均达20 mm以上的拮抗放线菌3株。根据其在鉴别培养基上的培养特征、孢子和孢子链的形态特征,生理生化特性以及16SrDNA序列分析对这3株拮抗放线菌进行鉴定。结果表明,3株拮抗放线菌都属于链霉菌属(Streptomyces),分别为粉红孢类群中的玫瑰暗黄链霉菌(S. roseofulvus Preobrazhenskaya)、绿色类群中的橄榄绿链霉菌(S. olivaceoviridis Preobrazhenskaya)和灰褐类群中的黄麻链霉菌(S. corchorusii Ahmed)。其中,玫瑰暗黄链霉菌菌株对青枯劳尔氏菌的拮抗效果最好,其平均抑菌圈直径可达54.66 mm;橄榄绿链霉菌菌株的拮抗效果次之,其平均抑菌圈直径为43.20 mm;黄麻链霉菌平均抑菌圈直径为20.34 mm。

  13. Diversity of actinomycetes in Taiwan strait marine sediments%台湾海峡海洋沉积物放线菌的多样性

    Institute of Scientific and Technical Information of China (English)

    梁效伟; 陈名洪; 林如; 王海龙; 谢阳; 连云阳; 江红

    2012-01-01

    目的 探究台湾海峡海洋沉积物中放线菌的多样性及发现合成药物先导化合物的新菌源.方法 采用6种选择性培养基分离15份来自台湾海峡沉积物样品中含有的放线菌.挑选不同培养特征的放线菌进行初步分类鉴别、16S rRNA基因序列系统进化分析及基于PCR的烯二炔抗生素基因筛选.结果 共分离到497株放线菌,挑选的95株放线菌分别属于放线菌7个科,11个属.16S rRNA基因序列分析结果提示分离到的小单孢菌科菌种存在数个潜在新种,95株菌中有27%的菌株含有烯二炔抗生素核弹头的生物合成基因片段.结论 海洋环境蕴含丰富的放线菌资源,具有产生烯二炔类抗生素的潜能.%Objective To investigate the diversity of actinomycetes isolated from Taiwan strait marine sediments and isolate new actinomycetes for discovering compounds of pharmaceutical importance. Methods Six selective media were used to isolate actinomycetes from 15 sediment samples. Actinobacterial diversity in these sediments was investigated by phylogenetic analysis based on 16S rRNA gene sequences. To detect potential producer strains of enediyne antibiotics, PCR based screening strategy was used. Results A total of 497 strains of actinomycetes were isolated and 95 representative isolates were selected on the basis of their morphologies on different media. 16S rRNA gene sequences phylogenetic analysis showed that these strains belonged to seven families including eleven genera. Phylogenetic analyses also grouped many of the strains into clades distinct from alt known genera within Micromonosporaceae, indicating that they may be new genera. 27% of the above 95 strains were detected and found containing enediyne polyketide synthase (PK.S) gene. Conclusion The results confirm that marine sediments are rich source of rare actinomycetes and the actinomycetes from marine environment have the potential of producing enediyne family antibiotics.

  14. Degradation of Textile Dye Reactive Navy – Blue Rx (Reactive blue–59) by an Isolated Actinomycete Streptomyces krainskii SUK – 5

    OpenAIRE

    Mane, U. V.; Gurav, P. N.; Deshmukh, A.M.; Govindwar, S. P.

    2008-01-01

    The isolated Actinomycete, Streptomyces krainskii, SUK -5 was found to decolorize and degrade textile dye Reactive blue–59.This azo dye was decolorized and degraded completely by Streptomyces krainskii SUK–5 at 24 h in shaking condition in the nutrient medium at pH 8. Induction in the activity of Lignin Peroxidase,and NADH-DCIP Reductase and MR reductase represents their role in degradation .The biodegradation was monitored by TLC, UV vis spectroscopy, FTIR. and GCMS analysis. Microbial and p...

  15. Structure of an MmyB-like regulator from C. aurantiacus, member of a new transcription factor family linked to antibiotic metabolism in actinomycetes.

    Directory of Open Access Journals (Sweden)

    Qingping Xu

    Full Text Available Actinomycetes are important bacterial sources of antibiotics and other secondary metabolites. Many antibiotic gene clusters are controlled by pathway-specific activators that act in response to growth conditions. Here we present the crystal structure of an MmyB-like transcription regulator MltR (PDB code 3pxp (Caur_2278 from Chloroflexus aurantiacus, in complex with a fatty acid (myristic acid. MltR is a distant homolog of the methylenomycin activator MmyB and consists of an Xre-type N-terminal DNA-binding domain and a C-terminal ligand-binding module that is related to the Per-Arnt-Sim (PAS domain. This structure has enabled identification of a new family of bacterial transcription factors that are distributed predominantly in actinomycetes. Bioinformatics analysis of MltR and other characterized family members suggest that they are likely associated with antibiotic and fatty acid metabolism in actinomycetes. Streptomyces coelicolor SCO4944 is a candidate as an ancestral member of the family. Its ortholog in S. griseus, SGR_6891, is induced by A-factor, a γ-butyrolactone that controls antibiotic production and development, and is adjacent to the A-factor synthase gen, afsA. The location of mltR/mmyB homologs, in particular those adjacent to less well-studied antibiotic-related genes, makes them interesting genetic markers for identifying new antibiotic genes. A model for signal-triggered DNA-binding by MltR is proposed.

  16. The Bio - control and Application of Actinomycetes against Plant Diseases%放线菌对植物病害的防治作用及应用

    Institute of Scientific and Technical Information of China (English)

    贾雨; 贾丽苑; 黄建新

    2012-01-01

    Actinomycetes are one of the most important bio - control micro - organisms which produce antibiotics and enzymes and are advantageous in the bio - control of plant diseases. This study addresses the bio - control of actinomycetes against plant diseases in terms of actinomycetes' action on phytopathogen and on the plants' disease resistance under the soil environ- ment. The paper also gives a brief introduction to the applications of actinomycetes in the bio - control of plant diseases, research hotspot and development trend.%放线菌是产生抗生素和酶的重要微生物资源之一,在防治植物病害中有很多优势.主要从放线菌与植物病原菌的作用和土壤环境中的放线菌对植物的抗病作用两方面,介绍了放线菌对植物病害的防治作用;简述目前放线菌在植病生防中的应用状况;以及研究热点和发展趋势.

  17. Recent advances in the bioactive metabolites of marine actinomycetes%海洋放线菌活性代谢产物研究最新进展

    Institute of Scientific and Technical Information of China (English)

    朱峰; 刘晓红; 林永成

    2007-01-01

    近年来海洋放线菌代谢产物的研究取得了很大进展,从海洋放线菌中分离到许多结构新奇、有特殊生理活性和有潜在实用价值的新化合物.研究表明海洋放线菌有可能成为抗生紊等药物工业的又一重要微生物资源.本文分类介绍了2001年到2005年间海洋放线菌代谢产物的研究进展,重点在于从海洋放线菌发现的新化合物及其生物活性.%Studis on the metabolites of marine actinomycetes have been rapidly developed recently.A number of unique structural compounds with special bioactivities and potential values were isolated from marine actinomycetes,which were expected to be another important microorganism resources for pharmaceutical industries.The recent advances in the bioactive metabolites of marine actinomycetes were reviewed in this paper with the literature published during 2001~2005.The emphasis is on the novel compounds and the relative bioactivities based on the structural classification.

  18. Screening of Mangrove Forest Actinomycetes and Its Antitumor Activity Detection%红树林放线菌筛选及其抗肿瘤活性测定

    Institute of Scientific and Technical Information of China (English)

    周中流; 徐立军

    2012-01-01

    Objective To isolate and purify the microbial strains from sea mud samples collected in Zhanjiang mangrove wetland for screening and detecting the antitumor activity. Methods The morphological method was adopted to identify actinomycetes strains. The MTT assay was applied to measure two tumor cells lines ( A549 and K562 ) cytotoxicity of 72 strains of actinomycete fermentation broth. Results By identification of isolated 72 strains of actinomycete, 18 percents of actinomycete fermentation broth showed the cytotoxicity in varying degrees. Especially,the fermentation broth of N2010-37 and N2010-68 revealed obvious antitumor activity on the above - mentioned two tumor cells lines. Conclusion The research results establish the foundation for seeking the antitumor components from mangrove forest actinomycete in Zhanjiang.%目的 从我国湛江红树林采集的海泥样品中分离纯化微生物菌株并进行筛选及抗肿瘤活性测定.方法 采用形态学方法鉴定放线菌菌株;采用四氮唑盐(MTT)法测定筛选出的72株放线菌发酵液对肺癌细胞A549与人类慢性髓性白血病细胞K562两种肿瘤细胞的细胞毒活性.结果 经鉴定分离得到了72株放线菌,其中18%的放线菌发酵液具有不同程度的细胞毒活性.N2010-37和N2010-68两株放线菌发酵液对上述两种肿瘤细胞株作用较显著.结论 该研究结果为从湛江红树林放线菌中寻找抗肿瘤活性成分奠定了基础.

  19. Comparative study of different methods for isolation of marine actinomycetes%海洋放线菌不同分离方法的比较研究

    Institute of Scientific and Technical Information of China (English)

    常显波; 刘文正; 尹琦; 张晓华

    2012-01-01

    The isolation techniques for marine actinomycetes from the inter-tidal sediment at Qingdao were studied by using the series dilution and plate spreading methods. The impacts of different pretreatments, diluents, seawater concentrations and media on the isolation of actinomycetes were investigated. The results showed that the growth of bacteria were obviously restrained in the samples when pretreated with 55℃ for 6 minutes, which enhanced the isolation of actinomycetes from the inter-tidal sediment; dilution of the samples with 1/4 Ringer's solution and spreading them on the media prepared with pure seawater could improve the isolation of actinomycetes. The 9 media exhibited significant differences on the number of actinomycetes recovered, with media Ml, M6, M7 and M8 being more effective than others.%采用平板涂布法,以青岛海区潮间带沉积物为对象进行海洋放线菌的分离方法研究.具体分析了不同样品预处理方式、稀释液、海水浓度和培养基种类等对分离效果的影响.结果表明,55℃预处理样品6 min能有效减少细菌数量,利于潮间带沉积物中放线菌的分离;以1/4林格氏溶液稀释样品、纯海水配置培养基,可以分离得到较多的放线菌;不同培养基对沉积物中放线菌的分离效果差别很大,本实验设置的M1 ~ M9培养基中,M1、M6、M7和M8培养基的分离效果优于其他5种.

  20. A novel alkaloid from marine-derived actinomycete Streptomyces xinghaiensis with broad-spectrum antibacterial and cytotoxic activities.

    Directory of Open Access Journals (Sweden)

    Wence Jiao

    Full Text Available Due to the increasing emergence of drug-resistant bacteria and tumor cell lines, novel antibiotics with antibacterial and cytotoxic activities are urgently needed. Marine actinobacteria are rich sources of novel antibiotics, and here we report the discovery of a novel alkaloid, xinghaiamine A, from a marine-derived actinomycete Streptomyces xinghaiensis NRRL B24674(T. Xinghaiamine A was purified from the fermentation broth, and its structure was elucidated based on extensive spectroscopic analysis, including 1D and 2D NMR spectrum as well as mass spectrometry. Xinghaiamine A was identified to be a novel alkaloid with highly symmetric structure on the basis of sulfoxide functional group, and sulfoxide containing compound has so far never been reported in microorganisms. Biological assays revealed that xinghaiamine A exhibited broad-spectrum antibacterial activities to both Gram-negative persistent hospital pathogens (e.g. Acinetobacter baumannii, Pseudomonas aeruginosa and Escherichia coli and Gram-positive ones, which include Staphylococcus aureus and Bacillus subtilis. In addition, xinghaiamine A also exhibited potent cytotoxic activity to human cancer cell lines of MCF-7 and U-937 with the IC50 of 0.6 and 0.5 µM, respectively.

  1. Genetic transformation of marine Actinomycete sp. Isolate M048 and expression of a recombinant plasmid carrying the apc gene

    Institute of Scientific and Technical Information of China (English)

    HOU Yanhua; LI Fuchao; QIN Song; WANG Quanfu

    2006-01-01

    Optimal conditions for protoplasts formation of marine Actinomycete sp. isolate M048 were described, dense and disperse mycelia were cultured in SGGP medium, 0.5% glycine, lysozyme exposure (2 mg/cm3, 37 ℃, 40 min), and the concentration of sucrose in protoplast buffer was 0.4 mol/dm3 for keeping the balance of osmotic pressure. Using PEG-mediated protoplasts transformation, the transformation frequency was 89 transformants per microgramme of pIJ702. Meanwhile, an effective transformation procedure was established based on intergeneric conjugation from E. coli ET12567 (pUZ8002) using shuttle vectors pPM801, pPM803 and a(ψ)C31-derived integration vector pIJ8600 containing oriT and attP fragments. Transformation frequencies were 5.30×10-4±0.26×10-4, 8.92×10-4±0.19×10-4 and 6.38×10-5±0.41×10-5, respectively. Further, the heterologous expression of the allophycocyanin gene (apc) in the strain M048 was used to demonstrate this transformation system. SDS-PAGE and Western blot analysis confirmed the expression of recombinant APC (rAPC).

  2. 促己酸菌产己酸的优良放线菌的筛选%Screening of Fine Actinomycetes that Promoting Caproic Acid Bacteria Producing Caproic Acid

    Institute of Scientific and Technical Information of China (English)

    郭威; 黄宇; 谢逾群; 方尚玲; 陈茂彬

    2016-01-01

    Research on actinomycetes related to liquor-making was not deep enough.More research were spent on molds, yeasts and bacteria.The paper screened an excellent actinomycetes named GW01 which can promoting caproic acid bacteria producing caproic acid. Moreover, GW01 can better adapt to the environment of pits.The development of actinomycetes GW01 may contribute to a better understanding of liquor brewing actinomycetes,and open up liquor brewing actinomycetes strain resources.%目前酿酒微生物的研究主要集中在霉菌、酵母菌和细菌。白酒酿造相关放线菌的研究存在进展缓慢、严重滞后、菌种资源匮乏等问题。以放线菌对己酸菌产己酸的影响为基础,筛选到一株优良放线菌GW01。该放线菌对己酸菌产己酸有较好促进作用,还对窖池环境有良好的适应性。放线菌GW01的开发有助于更好认识白酒酿造中的放线菌,拓展了白酒酿造放线菌资源。

  3. Study on method of actinomycetes isolation from Dead Sea%死海嗜盐耐盐放线菌分离方法研究

    Institute of Scientific and Technical Information of China (English)

    任海柯; 来航线; 王晨霞; 韦小敏

    2012-01-01

    【Objective】 The study was to explore an optimal method of actinomycetes isolation from Dead Sea,so as to improve the isolation of actinomycetes from soil with high salt concentration.【Method】 Actinomycete counts and numbers of actinomycete species were analyzed from three aspects:sample pre-treatments,cultural media and salt concentrations of media.Nine pre-treatments,including chemical,physical and accumulation culture methods,three types of cultural media,ISP5,HV and CMKA,and three salt concentrations of each medium(150,225,300 g/L) were tested.【Result】 ① For sample pre-treatments,numbers of actinomycete species isolated from the chemical+physical pre-treated sample were apparently higher than that from others,whereas species numbers isolated from the accumulation cultured sample were the least on three media.② With all of the three salt concentrations,numbers of actinomycete species and actinomycete counts isolated from soil samples both led a trend:CMKA〉HV〉ISP5.③ On three media,numbers of actinomycete species isolated from samples showed:300 g/L〉225 g/L〉150 g/L,while actinomycete counts showed:150 g/L〉225 g/L〉300 g/L.【Conclusion】 Pretreating soil samples with chemical+physical method and using 225 g/L salt concentration CMKA medium is the best way to isolate actinomycetes from Dead Sea.%【目的】探讨死海高盐地区分离嗜盐耐盐放线菌的最佳方法,为高盐地区放线菌的分离提供理论依据。【方法】采用物理方法(微波)、化学方法(加入孢子活化剂)、富集培养法及3种方法的组合共计9种方法,对死海地区土样进行预处理,然后在3种复合盐含量(150,225,300g/L)及不同培养基(ISP5、CMKA、HV)条件下,研究复合盐含量及培养基对分离放线菌种类和数量的影响,并筛选嗜盐耐盐放线菌的最佳分离方法。【结果】①在3种培养基上,对土样采用9种方法进行预处理,其中物理+化学

  4. 内生放线菌对鬼臼毒素的微生物转化%Microbial Transformation of Podophyllotoxin by Endophytic Actinomycetes

    Institute of Scientific and Technical Information of China (English)

    曹松; 曾志刚

    2012-01-01

    The microbial transformation of podophyllotoxin by endophytic actinomycetes isolated from the rhizoma of Taoerqi ( Sinopodophyllum hexandrum) was investigated to obtain some structural analogues or derivatives of podophyllotoxin. Endophytic actinomycetes were isolated from the rhizoma of S. Hexandrum by surface-sterilization method, and screening test for the microbial transformation of podophyllotoxin was carried out using thin layer chromatography and high performance liquid chromatography ( HPLC ). Bio-transformed products of podophyllotoxin were isolated and purified by silica column chromatography and preparative HPLC, and chemical structures of transformed products were elucidated on the basis of chemical spectral data. The endophytic actinomycetes was identified by morphological characteristics, physiological and biochemical characteristics, and the analysis of fragment of 16S rRNA gene. The results showed that among totally isolated 20 endophytic actinomycetes, one was found to be able transform podophyllotoxin into 4'-demethylepipodophyllotoxin, which was identified preliminarily as Streptomyces sp. Endophytic actinomycetes Streptomyces sp. Was able to modify the chemical structure of podophyllotoxin by demethylation and isomerization reaction, it was deduced that this actinomycetes possessed 0-demethylation and isomerization enzyme.%调查桃儿七根茎内生放线菌对鬼臼毒素的微生物转化,以期获得一些鬼臼毒素的结构类似物或衍生物.利用表面消毒法分离内生放线菌;采用薄层层析和高效液相色谱(HPLC)方法筛选转化鬼臼毒素的内生放线菌;利用硅胶柱层析和制备HPLC分离纯化生物转化产物;应用波谱技术解析转化产物的化学结构;通过形态学、生理生化特征和16S rRNA基因序列分析对内生放线菌进行初步鉴定.从桃儿七根茎中分离出20株内生放线菌,经筛选发现其中1株放线菌能转化鬼臼毒素,其产物为4′-去甲基表

  5. Isolation of Actinomycetes from Mangrove in Guangxi and Extraction of Its Genomic DNA%广西红树林放线菌的分离和DNA的提取

    Institute of Scientific and Technical Information of China (English)

    徐雅娟; 陈森洲; 骆耐香; 孔杰; 黄大林

    2009-01-01

    The actinomycetes in sea mud samples that from mangrove in Guangxi was isolated and its genomic DNA was extracted for 16S rDNA PCR amplification, and the isolated actinomycetes was identified. The results showed that the genomic DNA of actinomycetes from mangrove soil could successfully amplified 16S rDNA.%从广西红树林海泥样本中分离放线菌,提取其基因组DNA并进行16S rDNA PCR扩增,对所得放线菌进行鉴定.结果表明,从红树林土壤中提取的放线菌基因组DNA可成功扩增出16S rDNA.

  6. Biological Control of Sclerotinia sclerotiorum, Causal Agent of Sunflower Head and Stem Rot Disease, by Use of Soil borne Actinomycetes Isolates

    Directory of Open Access Journals (Sweden)

    F. Baniasadi

    2009-01-01

    Full Text Available Problem statement: High level of biosafety and non adverse effects on the environment of biocontrol strategies of pest management, are priorities of tomorrow's world agriculture. Actinomycetes are active biocontrol agents due to their antagonistic properties against wide range of plant pathogens particularly fungi. Fungal pathogens are liable for a big part of damages in agriculture economy. Approach: In the present research antifungal bioactivity of 50 isolates of Actinomycetes collected from soils of Kerman province of Iran was investigated against Sclerotinia sclerotiorum (Lib., the causal agent of stem rot in sunflower, through agar disc method and dual culture bioassays. The Streptomyces isolate No. 363 was propagated in submerged cultures and active crude was prepared upon which several biological characterizations performed. Greenhouse studies were achieved to confirm laboratory results. Results: Among the tested Streptomyces isolates, 10 isolates revealed antagonistic properties in dual culture procedure from which isolate No. 363 showed highest bioactivity. The active metabolite of Streptomyces isolate No. 363 was polar and well soluble in H2O. Using agar-disc method, progressive growth of the pathogen was highly reduced by the antagonist through exhibiting ability to constitute fungus-free zones of inhibitions. The results indicated that isolate No. 363 was a proper candidate for field biocontrol studies. Conclusion: Results may open a horizon for production of resistant transgenic plants having antifungal properties originated from biologically active Streptomyces spp. recognition and production of effective metabolite(s of Streptomyces spp. which was responsible for antifungal activities will be our commercial goal due to rich reserves of soil borne Actinomycetes in Iran.

  7. Optimizing water treatment practices for the removal of actinomycetes and earthy odor in water of Bovilla reservoir

    Directory of Open Access Journals (Sweden)

    ADELA KULLAJ

    2014-06-01

    Full Text Available Bovilla reservoir, which is situated 15 km North-East of Tirana the capital city of Albania is one of the major hidrotechnical works of this country. This reservoir is a warm monomictic water body and stratifies higher in the summer season. The predominant trophic state of Bovilla reservoir is oligotrophy. From autumn 2001 this reservoir repeatedly manifests an unpleasant taste and odor which is defined as musty- earthy. Taste and odor control has become an important issue for drinking water suppliers worldwide. Consumers react very sensitively to changes in the organoleptic quality of their drinking water. The reason is that odor compounds present a very low threshold of perception (10–20 ng/L. Bovilla water treatment plant treats 1800 L/s raw water taken from Bovilla reservoir, using oxidation, coagulation and flocculation, sedimentation, filtration and disinfection process. In cases of bad odor powdered activated carbon (PAC is added at the rapid mix section. Throughout the monitoring period were done: quality and sensory analysis of raw water on a weekly frequency, analysis of treated water after coagulation, laboratory scale experiments using different doses of chemicals, applying optimized doses in full scale and PAC adsorption experiments. The aims of this study were: to predict the PAC doses required to treat water of Bovilla reservoir containing bad taste and odor, to establish the removal efficiency of taste and odor by three types of activated carbons with different iodine number and to assess the impact of NaOCl and other chemical in the treatment process of the plant in removing actinomycetes and bad odor. Results have shown that traditional treatment processes are usually inadequate in removing taste and odor and optimization of plant practices is required. Powdered activated carbon (PAC can effectively remove taste and odor when the correct dose is applied.

  8. Bioactive 2(1H-Pyrazinones and Diketopiperazine Alkaloids from a Tunicate-Derived Actinomycete Streptomyces sp.

    Directory of Open Access Journals (Sweden)

    Lamiaa A. Shaala

    2016-08-01

    Full Text Available As a part of our ongoing effort to allocate marine microbial bioactive leads, a tunicate-derived actinomycete, Streptomyces sp. Did-27, was investigated. Three new 2(1H-pyrazinones derivatives, (S-6-(sec-butyl-3-isopropylpyrazin-2(1H-one (1, (S-3-(sec-butyl-6-isopropylpyrazin-2(1H-one (2 and (S-6-(sec-butyl-3-isobutylpyrazin-2(1H-one (3, together with the known (1H-pyrazinones analogues deoxymutaaspergillic acid (4, 3,6-diisobutyl-2(1H-pyrazinone (5 and 3,6-di-sec-butyl-2(1H-pyrazinone (6, and the diketopiperazine alkaloids cyclo(6-OH-d-Pro-l-Phe (7, bacillusamide B (8, cyclo(l-Pro-l-Leu and cyclo(l-Pro-l-Ile (10 were isolated from this strain. The structures of the compounds were determined by study of their one- and two-dimensional NMR spectra as well as high-resolution mass spectral determinations. Compound 4 was reported previously as a synthetic product, while compound 6 was reported as 2-hydroxy-3,6-di-sec-butylpyrazine. Herein, we report the complete NMR data for compounds 4 and 6. The compounds were evaluated for their cytotoxic activities against three cell lines. Compound 5 showed potent and selective activity against HCT-116 cell line with IC50 of 1.5 μg/mL, while 1–10 showed variable cytotoxic activities against these cancer cell lines. These results provide further understanding about the chemistry and bioactivities of the alkylated 2(1H-pyrazinone derivatives.

  9. Utilization of Agro-industrial Wastes for the Simultaneous Production of Amylase and Xylanase by Thermophilic Actinomycetes

    Directory of Open Access Journals (Sweden)

    Renu Singh

    2012-12-01

    Full Text Available Agro-industrial wastes such as sugarcane bagasse, wheat bran, rice bran, corn cob and wheat straw are cheapest and abundantly available natural carbon sources. The present study was aimed to production of amylase and xylanase simultaneously using agro-industrial waste as the sole carbon source. Seven thermophilic strains of actinomycete were isolated from the mushroom compost. Among of these, strain designated MSC702 having high potential to utilize agro-industrial wastes for the production of amylase and xylanase. Strain MSC702 was identified as novel species of Streptomyces through morphological characterization and 16S rRNA gene sequence. Enzyme production was determined using 1% (w/v of various agro-industrial waste in production medium containing (g/100mL: K2HPO4(0.1, (NH42SO4(0.1, NaCl (0.1, MgSO4(0.1 at pH 7.0 after incubation of 48 h at 50°C. The amylase activity (373.89 IU/mL and xylanase activity (30.15 IU/mL was maximum in rice bran. The decreasing order of amylase and xylanase activity in different type of agro-industrial wastes were found rice bran (RB > corn cob (CC > wheat bran (WB > wheat straw (WS > sugarcane bagasse (SB and rice bran (RB > wheat bran (WB > wheat straw (WS > sugarcane bagasse (SB > corn cob (CC, respectively. Mixed effect of different agro-industrial wastes was examined in different ratios. Enzyme yield of amylase and xylanase was ~1.3 and ~2.0 fold higher with RB: WB in 1:2 ratio.

  10. Degradation of Textile Dye Reactive Navy – Blue Rx (Reactive blue–59 by an Isolated Actinomycete Streptomyces krainskii SUK – 5

    Directory of Open Access Journals (Sweden)

    Mane, U. V.

    2008-01-01

    Full Text Available The isolated Actinomycete, Streptomyces krainskii, SUK -5 was found to decolorize and degrade textile dye Reactive blue–59.This azo dye was decolorized and degraded completely by Streptomyces krainskii SUK–5 at 24 h in shaking condition in the nutrient medium at pH 8. Induction in the activity of Lignin Peroxidase,and NADH-DCIP Reductase and MR reductase represents their role in degradation .The biodegradation was monitored by TLC, UV vis spectroscopy, FTIR. and GCMS analysis. Microbial and phytotoxicity studies of the product were carried out.

  11. Diversity of foam producing nocardioform actinomycetes isolated from biological foam from activated sludge plants in Comunidad Valenciana; Diversidad de actinomicetos nocardioformes productores de espumas biologicas aislados de plantas depuradoras de aguas residuales de la Comunidad Valenciana

    Energy Technology Data Exchange (ETDEWEB)

    Soler, A.; Alonso, J.L.; Cuesta, G.

    2009-07-01

    The formation of biological foams in activated sludge systems is one of the most important problems of solid separation in wastewater treatment plants. Nocardioform actinomycetes are the most important filamentous bacteria responsible of foam formation. This group of microorganisms has hydrophobic cellular surfaces due to the mycolic acids. These foams interfere in wastewater treatment process because retain many suspended solids, block conductions and produce overflowing in the digesters and corridors. To identify correctly the nocardioform actinomycetes we have to do poli phasic taxonomy that includes 16S rDNA sequences analysis, determinate several chemo taxonomic markers and some phenotypic tests. (Author) 18 refs.

  12. Production of Induced Secondary Metabolites by a Co-Culture of Sponge-Associated Actinomycetes, Actinokineospora sp. EG49 and Nocardiopsis sp. RV163

    Directory of Open Access Journals (Sweden)

    Yousef Dashti

    2014-05-01

    Full Text Available Two sponge-derived actinomycetes, Actinokineospora sp. EG49 and Nocardiopsis sp. RV163, were grown in co-culture and the presence of induced metabolites monitored by 1H NMR. Ten known compounds, including angucycline, diketopiperazine and β-carboline derivatives 1–10, were isolated from the EtOAc extracts of Actinokineospora sp. EG49 and Nocardiopsis sp. RV163. Co-cultivation of Actinokineospora sp. EG49 and Nocardiopsis sp. RV163 induced the biosynthesis of three natural products that were not detected in the single culture of either microorganism, namely N-(2-hydroxyphenyl-acetamide (11, 1,6-dihydroxyphenazine (12 and 5a,6,11a,12-tetrahydro-5a,11a-dimethyl[1,4]benzoxazino[3,2-b][1,4]benzoxazine (13a. When tested for biological activity against a range of bacteria and parasites, only the phenazine 12 was active against Bacillus sp. P25, Trypanosoma brucei and interestingly, against Actinokineospora sp. EG49. These findings highlight the co-cultivation approach as an effective strategy to access the bioactive secondary metabolites hidden in the genomes of marine actinomycetes.

  13. 嗜盐嗜碱放线菌的研究进展与展望%Research on Progress of Halophilic Basophilic Actinomycetes

    Institute of Scientific and Technical Information of China (English)

    加苏尔·阿不都克里木; 旭格拉; 塔衣尔; 阿不都克里木·热依木; 木尼热木·阿力木江; 迪丽拜尔·托合提

    2015-01-01

    Haloalkaliphilic extremophiles were survied in saline alkali soil. Halophilic basophilic Actinomycetes with the genetic characteristics and the special supersedes way, produced a variety of secondary me⁃tabolites, was one of microbial resources with great application prospect. This paper mainly reviewed Halophilic ba⁃sophilic Actinomycetes Resources, standard classification, distribution, system science, development and utilization prospects.%嗜盐嗜碱极端微生物主要分布于地球上的盐碱土壤中,嗜盐嗜碱放线菌适应并长期生存这一特殊极端环境,已具备独特的遗传特性和新陈代谢途径,能够产生具有开发利用价值的多种次生代谢产物,是一类极具应用前景的微生物资源。文章主要综述了嗜盐嗜碱放线菌的资源、分类标准、分布、系统学及其发展趋势、开发利用前景。

  14. Determination of the Residual Anthracene Concentration in Cultures of Haloalkalitolerant Actinomycetes by Excitation Fluorescence, Emission Fluorescence, and Synchronous Fluorescence: Comparative Study

    Directory of Open Access Journals (Sweden)

    Reyna del Carmen Lara-Severino

    2016-01-01

    Full Text Available Polycyclic aromatic hydrocarbons (PAHs are compounds that can be quantified by fluorescence due to their high quantum yield. Haloalkalitolerant bacteria tolerate wide concentration ranges of NaCl and pH. They are potentially useful in the PAHs bioremediation of saline environments. However, it is known that salinity of the sample affects fluorescence signal regardless of the method. The objective of this work was to carry out a comparative study based on the sensitivity, linearity, and detection limits of the excitation, emission, and synchronous fluorescence methods, during the quantification of the residual anthracene concentration from the following haloalkalitolerant actinomycetes cultures Kocuria rosea, Kocuria palustris, Microbacterium testaceum, and 4 strains of Nocardia farcinica, in order to establish the proper fluorescence method to study the PAHs biodegrading capacity of haloalkalitolerant actinobacteria. The study demonstrated statistical differences among the strains and among the fluorescence methods regarding the anthracene residual concentration. The results showed that excitation and emission fluorescence methods performed very similarly but sensitivity in excitation fluorescence is slightly higher. Synchronous fluorescence using Δλ=150 nm is not the most convenient method. Therefore we propose the excitation fluorescence as the fluorescence method to be used in the study of the PAHs biodegrading capacity of haloalkalitolerant actinomycetes.

  15. Anti-malarial Activities of Two Soil Actinomycete Isolates from Sabah via Inhibition of Glycogen Synthase Kinase 3β.

    Science.gov (United States)

    Dahari, Dhiana Efani; Salleh, Raifana Mohamad; Mahmud, Fauze; Chin, Lee Ping; Embi, Noor; Sidek, Hasidah Mohd

    2016-08-01

    Exploiting natural resources for bioactive compounds is an attractive drug discovery strategy in search for new anti-malarial drugs with novel modes of action. Initial screening efforts in our laboratory revealed two preparations of soil-derived actinomycetes (H11809 and FH025) with potent anti-malarial activities. Both crude extracts showed glycogen synthase kinase 3β (GSK3β)-inhibitory activities in a yeast-based kinase assay. We have previously shown that the GSK3 inhibitor, lithium chloride (LiCl), was able to suppress parasitaemia development in a rodent model of malarial infection. The present study aims to evaluate whether anti-malarial activities of H11809 and FH025 involve the inhibition of GSK3β. The acetone crude extracts of H11809 and FH025 each exerted strong inhibition on the growth of Plasmodium falciparum 3D7 in vitro with 50% inhibitory concentration (IC50) values of 0.57 ± 0.09 and 1.28 ± 0.11 µg/mL, respectively. The tested extracts exhibited Selectivity Index (SI) values exceeding 10 for the 3D7 strain. Both H11809 and FH025 showed dosage-dependent chemo-suppressive activities in vivo and improved animal survivability compared to non-treated infected mice. Western analysis revealed increased phosphorylation of serine (Ser 9) GSK3β (by 6.79 to 6.83-fold) in liver samples from infected mice treated with H11809 or FH025 compared to samples from non-infected or non-treated infected mice. A compound already identified in H11809 (data not shown), dibutyl phthalate (DBP) showed active anti-plasmodial activity against 3D7 (IC50 4.87 ± 1.26 µg/mL which is equivalent to 17.50 µM) and good chemo-suppressive activity in vivo (60.80% chemo-suppression at 300 mg/kg body weight [bw] dosage). DBP administration also resulted in increased phosphorylation of Ser 9 GSK3β compared to controls. Findings from the present study demonstrate that the potent anti-malarial activities of H11809 and FH025 were mediated via inhibition of host GSK3β. In addition

  16. Research advances on endophytic actinomycetes and their bioactive metabolites%植物内生放线菌及其生理活性物质研究进展

    Institute of Scientific and Technical Information of China (English)

    黄小龙; 周双清; 陈吉良

    2011-01-01

    Endophytic actinomycetes are a new microbiological resources for development of potentials. Till now, many kinds of endophytic actinomycetes were isolated from many living internal plant tissues. Endophytic actinomycetes can produce a lot of important physiological bioactive metabolites such as antibiotics , plant growth promoters , plant growth inhibitors and new characteristic enzymes.This paper summarized the recent advances on the studies of endophytic actinomycetes of plants and their bioactive metabolites.%植物内生放线菌是一类具有巨大开发潜力的新微生物资源.目前从许多活体植物组织内已分离到种类众多的植物内生放线菌,已有的研究表明植物内生放线菌能产生许多重要的生理活性物质,如抗生素类物质、植物生长促进剂、植物生长抑制剂以及具有新特性的酶类.植物内生放线菌在农业生产、医药新药的筛选上显示出广阔的应用前景.

  17. Screening of Ferulic acid degrading actinomycetes and their degradation and inhibiting effect%阿魏酸降解放线菌的筛选及其降解与拮抗效果研究

    Institute of Scientific and Technical Information of China (English)

    王晓辉; 薛泉宏

    2011-01-01

    【目的】筛选用于降解西瓜根泌自毒物质阿魏酸的放线菌,研究其降解与拮抗效果。【方法】以127株放线菌为供筛菌株,采用液体发酵培养法筛选阿魏酸降解放线菌,并研究放线菌对阿魏酸的降解率及对西甜瓜枯萎病菌等病原菌的拮抗性。【结果】①从127株供试放线菌中筛选出了编号为25,28及Z30的3株放线菌,在纯培养条件下,以阿魏酸为惟一碳源时,25、28、Z30 3株放线菌对阿魏酸均有较好的降解效果,降解率分别为94.3%,92.6%和90.1%。②在以阿魏酸、淀粉为混合碳源时,3株放线菌对阿魏酸均有较强的降解作用,降解率最高达100%。③纯细胞培养时,3株放线菌对阿魏酸仅有微弱的降解效果。④3株放线菌对西甜瓜枯萎病菌有较强的拮抗作用。【结论】筛选的3株放线菌具有降解西瓜自毒物质阿魏酸及拮抗西甜瓜枯萎病菌的双重功能。%【Objective】 The experiment was to screen degradaeng actinomycetes of ferulic acid and to study the degradation and inhibitory effect of the actinomycetes.【Method】 Liquid fermentation experiment was carried out to screen degradating actinomycetes of ferulic acid from 127 actinomyces strains and to study the degradation rate of ferulic acid by the actinomyces and their inhibiting effect on melon and cucumber fusarium wilt pathogen.【Result】 ①The actinomycetes 25,28 and Z30 were screened from 127 tested actinomycetes strains.Under pure culture conditions,the ferulic acid was the sole carbon source.The degradation rates of ferulic acid completed by the actinomycetes 25,28 and Z30 were 94.3%,92.6% and 90.1%,respectively.②In a mixture of ferulic acid and starch as carbon sources,the degradation rate of ferulic acid completed by the three actinomycetes was 100%.③The degradation rate of ferulic acid by three actinomycetes as pure cell was low.④The three strains of actinomycets have good inhibiting effect on the melon and

  18. Volatile metabolites from actinomycetes

    DEFF Research Database (Denmark)

    Scholler, C.E.G.; Gurtler, H.; Pedersen, R.;

    2002-01-01

    , sulfur compounds, and isoprenoid compounds. Among the most frequently produced compounds were isoprene, acetone, 1-butanol, 2-methyl-1-propanol,3-methyl-3-buten-1-ol, 3-methyl-1-butanol, 2-methyl-1-butanol, cyclopentanone, dimethyl disulfide, dimethyl trisulfide, 2-phenylethanol, and geosmin....... The relationship between the excretion of geosmin and the production of spores was examined for one isolate. A good correlation between headspace geosmin and the number of spores was observed, suggesting that VOCs could be used to indicate the activity of these microorganisms in heterogeneous substrates....

  19. [THE ROLE OF (p)ppGpp MOLECULES IN FORMATION OF "STRICT RESPONSE" IN BACTERIA AND BIOSYNTHESIS OF ANTIBIOTICS AND MORPHOLOGICAL DIFFERENTIATION IN ACTINOMYCETES].

    Science.gov (United States)

    Klymyshin, D; Stephanyshyn, O; Fedorenko, V

    2016-01-01

    Strict response is a pleiotropic physiological response of cells caused by lack of aminoacetylated tRNAs. Experimentally, this response occurs due to the lack of amino acids in the environment and the limitation of tRNA aminoacylation even in the presence of the corresponding amino acids in the cell. Many features of this response indicate its dependence on the accumulation of ppGpp molecules. There is a correlation between the growth rate of actinomycetes and biosynthesis of their secondary metabolites. Introduction of additional relA gene copies of ppGpp synthetase can affect the production of antibiotics in streptomycetes. The article presents the authors' own experimental data, dedicated to the influence of heterologous relA gene expression in Streptomyces nogalater cells.

  20. Isolation of Actinomycetes from Xisha Islands and Their Antimicrobial Activities%西沙群岛海域海洋放线菌的分离及其抗菌活性

    Institute of Scientific and Technical Information of China (English)

    房耀维; 王淑军; 刘姝; 吕明生; 焦豫良; 陈国强; 潘建梅

    2014-01-01

    Antimicrobial activities of actinomycete isolated from samples collected in Xisha Islands,Hainan Province, China were studied. The isolation of the samples adopted exsiccation,radiation,freezing,heating and others eleven sample pretreatment processes. Among them the typical strains were characterized and investigated for their growth and dependence on seawater. Staphylococcus aureus,E. coli,Saccharomyces cerevisiae,and Penicillium expansum were taken as indicators to test their antimicrobial activities. 383 actinomycete strains were isolated from samples collected in Xisha Islands. 23 of them were marine obligate actinomycetes. 93 typical strains were characterized and belonged to 9 families and 11 genera. The media used to isolated actinomycete strains had significantly affected the number and kinds of the strains. Six actinomycetes strains had antimicrobial activities against four tested indicators strains,among them four were marine obligate actinomycetes indicating that marine environment has abundant resources of actinomy-cetes. These actinomycetes,especially the marine obligate actinomycetes are hopeful to be a source to discover and develop novel antibiotic substances provide source for strain seeds.%分离西沙群岛海域放线菌并研究其抗菌活性。采用干燥、辐射、冷冻及加热处理等11种样品预处理方式和10种培养基对海洋放线菌进行分离,对代表性菌株进行鉴定,并考察分离放线菌生长的海水依赖性。进一步以金黄色葡萄球菌、大肠埃希菌、啤酒酵母和扩展青霉为指示菌考察分离放线菌的抗菌活性。从西沙群岛海域样品中分离获得放线菌383株,其中专性海洋放线菌23株。选定93株代表菌株进行鉴定,93株菌隶属于9个科,11个属。不同培养基对分离放线菌菌株的数量及种类影响显著。6株放线菌对4种指示菌均有抑菌活性,其中4株为专性海洋放线菌,表明海洋环境具有丰富的放线

  1. Identification and characterization of a new erythromycin biosynthetic gene cluster in Actinopolyspora erythraea YIM90600, a novel erythronolide-producing halophilic actinomycete isolated from salt field.

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    Dandan Chen

    Full Text Available Erythromycins (Ers are clinically potent macrolide antibiotics in treating pathogenic bacterial infections. Microorganisms capable of producing Ers, represented by Saccharopolyspora erythraea, are mainly soil-dwelling actinomycetes. So far, Actinopolyspora erythraea YIM90600, a halophilic actinomycete isolated from Baicheng salt field, is the only known Er-producing extremophile. In this study, we have reported the draft genome sequence of Ac. erythraea YIM90600, genome mining of which has revealed a new Er biosynthetic gene cluster encoding several novel Er metabolites. This Er gene cluster shares high identity and similarity with the one of Sa. erythraea NRRL2338, except for two absent genes, eryBI and eryG. By correlating genotype and chemotype, the biosynthetic pathways of 3'-demethyl-erythromycin C, erythronolide H (EH and erythronolide I have been proposed. The formation of EH is supposed to be sequentially biosynthesized via C-6/C-18 epoxidation and C-14 hydroxylation from 6-deoxyerythronolide B. Although an in vitro enzymatic activity assay has provided limited evidence for the involvement of the cytochrome P450 oxidase EryFAc (derived from Ac. erythraea YIM90600 in the catalysis of a two-step oxidation, resulting in an epoxy moiety, the attempt to construct an EH-producing Sa. erythraea mutant via gene complementation was not successful. Characterization of EryKAc (derived from Ac. erythraea YIM90600 in vitro has confirmed its unique role as a C-12 hydroxylase, rather than a C-14 hydroxylase of the erythronolide. Genomic characterization of the halophile Ac. erythraea YIM90600 will assist us to explore the great potential of extremophiles, and promote the understanding of EH formation, which will shed new insights into the biosynthesis of Er metabolites.

  2. Identification and preliminary characterization of non-polyene antibiotics secreted by new strain of actinomycete isolated from sebkha of Kenadsa, Algeria

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    Omar; Messaoudi; Mourad; Bendahou; Ibrahim; Benamar; Djamal-Elddine; Abdelwouhid

    2015-01-01

    Objective: To study the antimicrobial activity of actinomycetes isolated from sabkha of Kenadsa and identification of the isolate interesting. Methods: Eighteen strains were isolated, using four culture media from sebkha of Kenadsa(Bechar, Southwestern Algeria). Screening of antimicrobial activity consisted of two steps: in primary screening, antibacterial activity was determined by using the agar plug method against test strains; in secondary screening, better isolate which showed a good activity in the first screening was selected to extract antimicrobial substances. The antimicrobial activities of extracts were evaluated by using Kirby-Bauer disc diffusion method. Partial characterization of antimicrobial products was performed on the basis of chemical revelations, UV-vis spectrometry and infrared spectroscopy. The identification of isolate interesting was performed through morphological, chemical, biochemical and physiological characteristics. Results: All isolates showed antimicrobial activity against at least one microorganism test. One isolate, LAM143 cG 3, was selected for its broad spectrum and high antimicrobial activity. The isolate LAM143 c G3 was identified as Spirillospora sp. The comparison between the species of this genus(Spirillospora rubra and Spirillospora albida) and our isolate indicated the existence of several physiological and biochemical differences which led us to suppose that this was a new member of this genus. Primary characterization of antimicrobial substances produced by the isolate LAM143 c G3 indicated the presence of amines and phenols. The UV–vis spectrum suggested a non-polyenic nature of substances secreted by our isolate, while infrared confirmed the presence of amine groups.Conclusions: The result of the present study revealed that sebkha of Kenadsa was rich in rare actinomycetes, that secreted interesting antimicrobial substance.

  3. 垃圾堆肥放线菌发酵过滤液对高羊茅初期生长的影响%Effects of actinomycetes fermented filtrates from MSW compost on seedling growth of tall fescue

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    程田; 赵树兰; 多立安

    2012-01-01

    通过向草坪基质中加入不同浓度生活垃圾堆肥放线菌发酵滤液,研究了堆肥放线菌发酵液对草坪草高羊茅萌发及初期生长的影响。结果表明:各浓度放线菌发酵滤液对高羊茅的生长指标和叶绿素含量均有显著的促进作用,其中,以稀释4倍的放线菌发酵滤液的促进效果最为明显。在稀释4倍的放线菌发酵滤液的处理下,高羊茅的发芽率、株高、地上干重、地下干重和叶绿素含量分别比对照提高了17.3%、17.9%、20.0%、66.7%和60.3%。虽然,不同浓度的放线菌发酵滤液对高羊茅的萌发和初期生长均具有一定的促进作用,但以稀释4倍的放线菌发酵滤液效果为最佳。%The effect of different concentrations of actinomycetes fermented filtrate from municipal solid waste(MSW) compost on germination and seedling growth of tall fescue was studied.The results showed that different treatments of actinomycetes filtrates promoted the seed germination and growth.Among the three treatments,4 times diluted actinomycetes filtrate had the most obvious effect.Compared with the control,4 times diluted actinomycetes filtrate increased the germination rate,seedling height,aboveground dry weight,underground dry weight and total chlorophyll content by 17.3%,17.9%,20%,66.7% and 60.3% respectively.It could be concluded that actinomycetes filtrates at different concentrations could promote seed germination and seedling growth,and 4 times diluted actinomycetes filtrate was the most effective.

  4. 浅议达托霉素在环境放线菌中的抗性机制%Extraction of Supporting Drug Resistance Mechanism of Actinomycetes in the Environment

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    倪慧慧

    2013-01-01

    本文通过对所有环境放线菌耐受达托霉素的程度上,进行了药性、药理的研究,并且为出现临床耐药机制提供了预警,从而说明了达托霉素在环境放线菌中具有很高的抗性频率,其中它的主要抗性机制之一是灭活达托霉素。%This article through to al environmental actinomycetes tolerance of the extent of toxin, the medicinal properties, pharmacological research, and provides a warning in clinical drug resistance mechanism, which shows up to Joe drug resistance of actinomycetes in the environment of has the very high frequency, which is one of the main resistance mechanism of inactivated a toxin.

  5. 放线菌A4产淀粉酶发酵条件的优化%Optimization of the Fermentation Conditions for Amylase-Producing Actinomycetes A4

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    李堆淑

    2013-01-01

    In order to provide a certain theoretical reference for industrial production of amylase-producing actinomycetes, according to the nutritional requirement and growth characteristics of amylase-producing actinomycetes A, . the author analyzed the effects of different factors on fermentation of amylase-producing actinomycetes A,. The results showed that the optimal fermentation conditions included cornmeal 3.00%, liquid volume 80. 17 ml, pH 7. 75. beef extract 0. 5% and peptone 0. 49%. Under the optimum conditions, the average enzyme activity of amylase-producing actinomycetes A4 reached 1.939 U/mL.%为给工业化生产放线菌产淀粉酶提供一定的理论依据,根据产淀粉酶放线菌菌株A4的营养需要和生长特性,分析了不同因素对放线菌A4产淀粉酶发酵的影响.结果表明:放线菌A4产淀粉酶的最佳发酵条件为玉米粉3.00%、装液量80.17 mL、pH 7.75、牛肉膏0.5%和蛋白胨0.49%,在此条件下,产淀粉酶放线菌菌株A4的平均酶活力达1.939 U/mL.

  6. 一株产生物活性物质放线菌的分离鉴定%Isolation and Identification of a Strain of Actinomycetes Producing Bioactive Substance

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    詹建立; 陈芸; 陈涛

    2014-01-01

    基于16S rRNA 序列分析,本文对塔什库尔干县土壤中的放线菌进行了初步分离和鉴定。通过平板培养法,对分离鉴定的放线菌菌株进行活性物质的分析和研究,从塔县土壤中分离得到8株放线菌,其中 CT -1产生的活性物质能够抑制 Bacillus subtilis。从8株放线菌选出3株16S rRNA 的序列分析,推断放线菌 CT -1、CT -3和 CT -7菌株同属于内芽孢杆菌属(Paenibacillus)。实验表明这3株放线菌虽然来源相同却有不同的生理生化特性。%Based on the analysis of 16S rRNA sequence, this study isolated and identified actinomycetes isolated from the soil of Taxkorgan County. Then, by the method of culturing on the plates, we analyzed and studied the active substance of the isolated actinomycetes. It is shown that the three separated actinomycetes possibly belonged to the genus of Paenibacillus, and their physio-logical and biochemical charateristics are different. Meanwhile, the strains of actinomycetes CT-1 had the antibacterial effects on Bacillus subtilis.

  7. The Effects of Actinomycetes in Pit Mud of Nongxiang Baijiu(Liquor) on Liquor Quality%浓香型白酒窖泥中放线菌对酒质的影响

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    李东; 黄明

    2015-01-01

    放线菌是原核生物的一个类群。其在土壤、空气和水中,尤其是含水量低、有机物丰富、呈中性或微碱性的土壤中数量较多。而泥土中散发出来的土腥味就主要是由放线菌中链霉菌产生的土腥素造成的。通过对放线菌生长的土壤浸取液对浓香型白酒酒质的影响,初步探索了放线菌对浓香型白酒生产的影响。%Actinomycetes is a group of prokaryotes. It is distributed in the soil, air and water, and it is rich especially in soil with low moisture content or rich organic substances, and in neutral or slightly alkaline soil. The smell of the soil mainly comes from geosmin produced by Strep-tomyces in Actinomycetes. In this paper, the effects of soil leaching solution (soil with the growth of Actinomycetes) on the quality of Nongx-iang Baijiu(liquor) were investigated.

  8. 海洋放线菌代谢产物蒽环类化合物研究进展%Research Progress in Anthracycline Compounds Produced by Marine Actinomycetes

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    马毅敏; 陆园园; 邢莹莹; 奚涛

    2011-01-01

    The marine actinomycetes are likely to be important sources of new natural products. In recent years,plenty of novel structures have been isolated from marine actinomycetes. Among them,there are many novel anthracycline metabolites with good antibacterial and antitumor activities. Anthracycline compounds isolated from marine actinomycetes and their activities were summarized in this paper,and a perspective in regard to the future development of the marine natural products was also discussed.%海洋放线菌代谢产物是抗肿瘤活性物质的重要来源.近年来,从海洋放线菌中分离到很多新化合物,其中许多结构新颖的蒽环类代谢产物具有良好的抗菌抗肿瘤活性.文章对近年来从海洋放线菌中分离得到的蒽环类代谢产物进行了归纳,并展望今后海洋天然产物的发展方向.

  9. 生防放线菌TGNBSA5的鉴定及其活性物质的研究%Identification of a Bioactive Endophytic Actinomycete TGNBSA5 and Study on Its Active Substances

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    黄以超; 颜霞; 王建华; 高小宁; 王惠; 黄丽丽

    2012-01-01

    Endophytic actinomycete TGNBSA5, isolated from Arctium lappa stem, has strong inhibitory activity against Pseudotnonas syringae pv, actinidiae (Psa). In order to exploit the bio-control application of the actinomycete, physiological and biochemical characterization, morphological, and 16S rDNA sequence analysis were conducted to identify the strain. Meanwhile, after further fermentation of the strain, bioactive compounds were isolated and purified by ethyl acetate extraction, chro-matographic technology, and HPLC detection. The result showed that the endophytic actinomycete was classified as Streptomyces sporovirgulis. NMR and UV spectra analysis indicated that one of the bioactive compounds was benzyl alcohol. It is the first time that the endophytic actinomycete Streptomyces sporovirguiis be isolated from plant. The clarification of the bioactive benzyl alcohol provides theoretical basis for the development of this actinomycete and the bio-control of kiwifruit canker disease as well.%牛蒡内生放线菌TGNBSA5对猕猴桃溃疡病菌有较好拮抗作用.为开发该生防菌的生物防治价值,采用生理生化活性测定、形态观察及16S rDNA序列分析,并经发酵培养后,发酵液采用乙酸乙酯萃取、柱层析和薄层层析、HPLC检测等方法分离纯化抑菌活性组分.结果表明,该内生放线菌为链霉菌属的孢杆链霉菌( Streptomyces sporovirgulis),经紫外和NMR鉴定活性组分之一为苯甲醇.孢杆链霉菌为第一次从植物中分离获得,且活性组分苯甲醇的明确将为猕猴桃溃疡病的防治提供理论依据.

  10. Isolation of an Antagonistic Actinomycete Strain against Dioscorea opposita Thunb Anthracnose and Its Primary Identification%一株淮山炭疽病拮抗放线菌的分离及初步鉴定

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    黄小龙; 曹树威; 周双清; 黄东益; 汤维

    2011-01-01

    [目的]从海南药用植物根际分离得到对淮山炭疽病具有拮抗活性的放线菌菌株,并时其分类地位进行鉴定.[方法]采用HV培养基从盾叶鸡蛋花根际土壤分离放线菌菌株;通过平板对峙培养和发酵代谢产物抑菌试验筛选活性放线菌;根据形态特征,结合16SrRNA基因序列分析鉴定活性放线菌的分类地位.[结果]从盾叶鸡蛋花的根际土壤分离到12株放线菌,筛选到1株对淮山炭疽病菌具有良好拮抗活性的菌株51173,菌株51173鉴定为链霉菌属Streptomyces violaceasniger 16S rRNA gene Glade中的成员.[结论]放线菌菌株51173在淮山炭疽病菌的生物防治中将具有很好的开发应用前景.%[Objective]The paper was to isolate actinomycete strains with antagonistic activity against Dioscorea opposita Thunb anthracnose from the rhizosphere soil of medicinal plants in Hainan Province, and identify its taxonomic status. [ Method ] Using HV medium, actinomycete strains were isolated from the rhizosphere soil of frangipani (Plumeria rubra L. ). The active antagonistic actinomycetes were selected by using confrontation culture method and inhibition test of fermentation products. According to morphology,combined with 16S rRNA gene analysis,the taxonomic status of active actinomycetes was identified. [ Result]Twelve strains of actinomycetes were isolated from the rhizosphere soil of medicinal plant frangipani(P. rubra L. ). Strain 51173 showed significant antifungal activity against Colletotrichum gloeosporioides, which was identified to be a member of Streptomyces violaceusniger 16S rRNA gene clade. [ Conclusion] Strain 51173 showed a good application potential for biological control against D. opposita Thunb anthracnose.

  11. 芦笋老茎堆肥中嗜热放线菌的分离和鉴定%Isolation and Identification of Thermophilic Actinomycetes in Asparagus Old Stem Compost

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    陈婷婷; 王丽芳; 王琪; 韩建荣

    2013-01-01

    采用稀释涂布法对芦笋老茎堆肥不同发酵阶段6个样品中的嗜热可培养放线菌进行分离,经纯化得到菌落形态有明显区别的23个菌株;根据16S rDNA序列分析结果,其中,4株的序列与白浅灰链霉菌Streptomyces albogriseolus的同源性最高,5株的序列与热普通链霉菌Streptomyces thermovulgaris的同源性最高,2株的序列与假浅灰链霉菌Streptomyces pseudogriseolus的同源性最高,1株的序列与刺棘链霉菌Streptomyces espinosus的同源性最高,有11株在GenBank数据库中未找到与其相似的已知链霉菌种的序列,分类地位待定.结果说明,芦笋老茎堆肥中优势的嗜热可培养放线菌主要是白浅灰链霉菌和热普通链霉菌.%The culturable thermophilic actinomycetes in the asparagus old stem compost samples at different fermentation stages were investigated. By dilution-plate method, twenty-three strains of actinomycetes were isolated from the samples. According to 16S rDNA sequence analysis, preliminary identification of these actinomycetes strains was done. Among these 23 stains of actinomycetes, four strains showed the highest similarity to Streptomyces albogriseolus, five strains to Streptomyces thermovulgaris, two strains to Streptomyces pseudogriseolus, and one strain to Streptomyces espinosus. Eleven strains could not be identified because there were no matched gene sequences of Streptomyces spp. To be found in the GenBank. The results indicated that Streptomyces albogriseolus and Streptomyces thermovulgaris were the most frequently isolated thermophilic actinomycetes from the asparagus old stem compost.

  12. Impact of Travel Disturbance on Soil Actinomycetes Communities Structure of Yaoquan Mountain in Wudalianchi%人类干扰对五大连池药泉山放线菌群落结构影响

    Institute of Scientific and Technical Information of China (English)

    关健飞; 王继华; 张雪萍; 龚雪; 王淼; 周小倩

    2016-01-01

    To understand the effect of travel disturbance on soil ecological system, the paper taking Yaoquan mountain of Wudalianchi as a research case, the impact of travel disturbance on actinomycetes communities structure was studied, and response relationship between soil chemical properties and actinomycetes communities' structure was analyzed. The results indicated that the soil actinomycetes number was between 0. 48 × 107 cfu/g and 5. 13 × 107 cfu/g of Yaoquan mountain. And 118 actinomycetes were isolated and purified, which belonged to 11 genera. The similar rate was 65. 38℅ of the whole mountain actinomycetes community structure. Micromonospora frequency separation is more consistent in the active area, Micropolyspora and Streptomyces frequency separation are larger in the buffer and background zone. 5 chemical factors and 5 kinds of enzyme activity have different degree of response relationship with actinomycetes population distribution. Sucrase has larger impact on actinomycetes community structure followed by organic matter, urease, and available phosphorus. Actinomyces andStreptomyces are distributed widely, mainly in the central positions, and they are common genus for each sample point Actinomyces. Streptoverticillium is positively correlated to sucrase, Micromonospora is positively correlated to phosphatase, and Frankia is positively correlated to urease, while Actinomadura is positively correlated to available phosphorus.%为了解人类干扰对土壤生态系统的影响,以五大连池药泉山为研究对象,研究人类干扰对土壤放线菌群落结构的影响以及放线菌群落结构与土壤化学性质、酶活性变化之间的响应关系. 研究结果表明:药泉山土壤中可培养放线菌数量为0. 48 × 107 ~5. 13 × 107 cfu/g,共分离放线菌118株,分属于11个属. 药泉山土壤中放线菌相似度为65. 38℅. 小单孢菌属(Micromonospora)在活动区分离频率较为一致;小

  13. Influência da antibiose exercida por actinomicetos às estirpes de Bradyrhizobium SPP., na nodulação da soja Influence of antibiosis produced by actinomycetes on strains of Bradyrhizobium SPP. on soybean nodulation

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    João Carlos Pereira

    1999-01-01

    Full Text Available Este trabalho teve por objetivo avaliar o espectro antibiótico de actinomicetos provenientes de solos de Cerrados e a sua influência na nodulação da soja. As estirpes BR 29, BR 33, BR 40, BR 85, BR 86, BR 96, 47/587, 3B-7 e 4A-5 de Bradyrhizobium spp. apresentaram comportamento diferenciado em relação à resistência natural aos antibióticos produzidos por 204 actinomicetos. As estirpes BR 29 e BR 96 foram sensíveis a 5,2 e 9,9% dos antibióticos produzidos, respectivamente, enquanto a BR 33 apresentou sensibilidade a 20,3%. O antagonismo exercido pelos actinomicetos exclusivamente à BR 29 e BR 33 foi de 1,6 e 5,7%, respectivamente. Esse efeito não foi observado nas estirpes BR 40 e BR 96. Inoculações simples e em mistura das estirpes na presença de actinomicetos influenciaram a nodulação da soja. A co-inoculação da BR 33 e BR 29 com o isolado 370 reduziu o percentual de ocorrência média, nos nódulos, da BR 29, de 94,1% para 83,7%, com conseqüente aumento da BR 33 de 6,7% para 17,2%. Os resultados evidenciam a importância de estudos ecológicos desses microrganismos, visando avaliar o seu papel no estabelecimento de uma nodulação eficiente.The aim of this work was to evaluate the antibiotic spectrum of actinomycetes from Cerrado soils and their influence on soybean nodulation. Strains BR 29, BR 33, BR 40, BR 85, BR 86, BR 96, 47/587, 3B-7 and 4A-5 of Bradyrhizobium spp. were characterized by their natural resistence to antibiotics produced by 204 actinomycete isolates. The strains BR 29 and BR 96 of B. elkanii were sensitive to 5.2% and 9.9% the products of actinomycete isolates, respectively, while BR 33 was sensitive up to 20.3%. The antagonistic effects caused by actinomycete exclusively to BR 29 and BR 33 were 1.6% and 5.7% respectively. This effect was not observed for strains BR 40 and BR 96. Single and multistrains inoculations in the presence or absence of actinomycetes affected soybean nodulation. On double

  14. 繁茂膜海绵中可培养稀有放线菌的多样性%Phylogenetic diversity of the culturable rare actinomycetes in marine sponge Hymeniacidon perlevis by improved isolation media

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    信艳娟; 吴佩春; 邓麦村; 张卫

    2009-01-01

    [Objective] Based on the molecular diversity information, seven actinomycete-selective culture media and isolation conditions were modified to isolate and cultivate diverse rare actinomycetes from Hymeniacidon perlevis. [Methods] Modified, selective cultivation and enrichment media were used, with the addition of an elemental solution of simulating the elemental composition of marine sponge H. perlevis. Restriction Fragment Length Polymorphism (RFLP) analysis of 16S rDNA sequence was used to reveal the diversity of culturable rare actinomycetes. [Results] A total of 59 actinomycete strains were isolated from the marine sponge H. perlevis . A total of 27 representative actinomycetes were selected according to their morphological feature, color and pigments. They gave 15 different RFLP patterns after digesting their PCR products of 16s rDNA with Hha I . The results showed that these isolates belonged to 10 genera: Streptomyces, Nocardiopsis, Micromonospora, Cellulosimicrobium, Gordonia, Nocardia, Prauseria, Pseudonocardia, Saccharomonospora and Microbacterium. [ Conclusion] The modified isolation media and selective cultivation procedures are highly effective in the recovery of culturable actinomycetes from the marine sponge H. perlevis , resulting in the highest diversity of culturable rare actinomycetes from any sponges.%[目的]本文旨在尝试改进分离培养方法从大连海域繁茂膜海绵中筛选稀有放线菌,并对其多样性进行研究.[方法]根据繁茂膜海绵元素组成配制微量元素溶液,加入到放线菌分离培养基中,同时将部分培养基稀释成寡营养培养基,结合富集培养法,对繁茂膜海绵中放线菌进行分离培养.采用16S rDNA的限制性片断长度多态性(.Restriction Fragment Length Polymorphism,RFLP)分析和序列分析,揭示其多样性.[结果]共获得可培养放线菌59株,通过形态、颜色观察,将其归为27个类群.RFLP分析表现为15种不同的图谱类型.16S rDNA序列分

  15. Biocontrol of Rhizoctonia solani damping-off and promotion of tomato plant growth by endophytic actinomycetes isolated from native plants of Algerian Sahara.

    Science.gov (United States)

    Goudjal, Yacine; Toumatia, Omrane; Yekkour, Amine; Sabaou, Nasserdine; Mathieu, Florence; Zitouni, Abdelghani

    2014-01-20

    Thirty-four endophytic actinomycetes were isolated from the roots of native plants of the Algerian Sahara. Morphological and chemical studies showed that twenty-nine isolates belonged to the Streptomyces genus and five were non-Streptomyces. All isolates were screened for their in vitro antifungal activity against Rhizoctonia solani. The six that had the greatest pathogen inhibitory capacities were subsequently tested for their in vivo biocontrol potential on R. solani damping-off in sterilized and non-sterilized soils, and for their plant-growth promoting activities on tomato seedlings. In both soils, coating tomato seeds with antagonistic isolates significantly reduced (Pdamping-off of tomato seedlings. Among the isolates tested, the strains CA-2 and AA-2 exhibited the same disease incidence reduction as thioperoxydicarbonic diamide, tetramethylthiram (TMTD) and no significant differences (Pseed-treated seedlings compared to the control. The taxonomic position based on 16S rDNA sequence analysis and phylogenetic studies indicated that the strains CA-2 and AA-2 were related to Streptomyces mutabilis NBRC 12800(T) (100% of similarity) and Streptomyces cyaneofuscatus JCM 4364(T) (100% of similarity), respectively. PMID:23920229

  16. An actinomycete isolate from solitary wasp mud nest having strong antibacterial activity and kills the Candida cells due the shrinkage and the cytosolic loss

    Directory of Open Access Journals (Sweden)

    Vijay eKumar

    2014-08-01

    Full Text Available An actinomycetes strain designated as MN 2(6 was isolated from the solitary wasp mud nest. The isolate was identified using polyphasic taxonomy. It produced the extensive branched brown substrate and white aerial hyphae that changed into grayish black. The aerial mycelia produced the spiral spore chains with rugose spore surface. The growth was observed between temperature range of 27-37°C, pH 8-10 and below salt concentration of 6% (w/v. The comparative analysis of 16S rRNA gene sequence and phylogenetic relationship showed that strain MN 2(6 lies in clade with Streptomyces hygroscopicus subsp. hygroscopicus NRRL 2387T, Streptomyces sporocinereus NBRC 100766T and Streptomyces demainii NRRL B-1478T with which it shares a 16S rRNA gene sequence similarity of 99.3%. The strain MN 2(6 can be differentiated from type strains based on phenotypic characteristics. The strain MN 2(6 showed most promising activity against Gram-positive, Gram-negative bacteria, acid-fast bacilli and Candida species suggesting broad-spectrum characteristics of the active metabolite. Evaluation of anti-candidal activity of the metabolite of strain MN 2(6 by scanning electron microscopy (SEM revealed changed external morphology of yeast. It kills the Candida cells due to the shrinkage and the cytosolic loss. However, further studies are required to elucidate the structure of the active metabolite produced by the isolate MN 2(6

  17. Isolation and Molecular Identification of Actinomycetes That Highly Inhibited the Activity of S. aureus%高抑制金黄色葡萄球菌活性放线菌的分离及分子鉴定

    Institute of Scientific and Technical Information of China (English)

    窦会娟; 李林珂; 刘新胜; 孔连海

    2011-01-01

    Metabolin was screened and isolated from hospital soil, which was the actinomycete with highly inhibition for S. aureus activity,and molecular identification was carried out for actinomycete. Photocopy dish was used, and Staphylococcus aureus was viewed as indicator bacteria for the isolation of actinomycetes, then carrying out identification based on 16S rDNA sequence analysis. The results indicate that A01 bacterial strain fermentation broth have better inhibition effect on S. aureus, and have good relationship with Streptomyces sp. VTTE-042674 and even reach to 99.86%, thus, it belongs to Streptomyces avermitilis. 16S rDNA sequence of the bacterial strain have already included by GenBank, moreover, the sequence registration number are HQ660584.%从医院土壤中筛选分离代谢物具有较高抑制金黄色葡萄球菌活性的放线菌,并对其进行分子鉴定.结果得出,采用影印平皿法,以金黄色葡萄球菌为指示菌进行放线菌的分离,通过16S rDNA序列分析进行鉴定.结果得出,A01菌株发酵液对金黄色葡萄球菌抑制效果较好,与Streptomyces sp.VTTE-042674亲缘关系最近,达到99.86%,应属于链霉菌属.该菌株的16S rDNA序列已被GenBank收录,序列登录号为 HQ660584.

  18. Effect Study on Isolation and Screening of Antagonistic Actinomycetes in Soil%土壤拮抗放线菌的分离与筛选效果研究

    Institute of Scientific and Technical Information of China (English)

    刘炳源; 周晶

    2013-01-01

    针对青海地区不同类型的土壤进行放线菌的分离、筛选。结果表明,10-3倍土壤稀释浓度为分离放线菌的最佳土壤稀释浓度;重铬酸钾是一种高效、方便、廉价的杂菌抑制剂,共筛得102株形态各异的放线菌,有32株菌分别对9种指示菌有较强的拮抗性,26株对不同细菌有较强抑菌活性,6株对真菌有抑菌活性,其中第24号放线菌对不同的指示菌的拮抗性最好。%Actinomycetes in different types of soil from Qinghai Area were isolated and screened. The results showed that the best soil diluted concentration for separating Actinomyces was 10-3 times. Heavy chromic acid potassium was a kind of high efficient,convenient,inexpensive,mixed bacteria inhibitors,and 102 strains Actinomycetes with different morphology were screened,in which 32 strains had stronger mineralocorticoid resistance on 9 indication bacteria respectively ,26 strains had a inhibitor on different bacteria ,6 strains had antibacterial activity on fungus ,the mineralocorticoid resistance of 24th Actinomycetes was the best for different instructions.

  19. 红树林底泥放线菌( N2010-37)发酵液的化学成分%Chemical Compounds of Actinomycete strain ( N2010-37 ) of Bottom Mud in Mangrove

    Institute of Scientific and Technical Information of China (English)

    周中流

    2011-01-01

    Objective: To study the chemical components of the cultured filaments of an actinomycete strain ( N2010-37 ) . Method: Compounds were isolated and purified by chromatographic techniques and recrystallization, and the structures were identified by spectral methods together with physiochemical analysis. Result: Seven compounds were identified. There were 6, 7-dimethoxy-5, 8-dihydroxylflavone ( Ⅰ ) , 5, 6, 7, 8-tetramethoxyflavone ( Ⅱ ) , P-hydroxybenzonic acid ( Ⅲ ) , P-hydroxybenzaldehyde ( Ⅳ ) , uracil ( Ⅴ ) , adenosine (Ⅵ), daucosterol ( Ⅶ ) . Conclusion: Compounds Ⅰ and Ⅱ were isolated from marine actinomycete for the first time. Compounds Ⅲ-Ⅶ have been isolated from this actinomycete for the first time.%目的:研究红树林底泥放线菌(N2010-37)中化学成分.方法:放线菌(N2010-37)发酵菌丝体经95%乙醇提取,溶剂分级萃取,应用多种柱色谱分离和谱学分析方法对乙酸乙酯萃取部位化学成分进行研究.结果:从乙酸乙酯部位分离得到7个化合物,分别为6,7-二甲氧基-5,8-二羟基黄酮(Ⅰ),5,6,7,8-四甲氧基黄酮(Ⅱ),对羟基苯甲酸(Ⅲ),对羟基苯甲醛(Ⅳ),尿嘧啶(V),腺嘌呤核苷(Ⅵ),胡萝卜苷(Ⅶ).结论:化合物Ⅰ和化合物Ⅱ首次从海洋放线菌次级代谢产物中分离得到,化合物Ⅲ~Ⅶ为首次从该放线菌中分离得到.

  20. Study on Antifungal Activity of Secondary Metabolites of A Marine Actinomycete%一株海洋放线菌次级代谢产物抗真菌活性的研究

    Institute of Scientific and Technical Information of China (English)

    李扬; 杨依顺; 窦洁; 王慧; 杨岱琳; 周长林

    2013-01-01

    随着真菌感染的发病率及抗药性的逐年上升,筛选新的抗真菌活性物质已成为临床治疗系统性真菌感染的迫切需要.以双层琼脂扩散法测定抗真菌活性,研究10株海洋放线菌的发酵液及其菌体甲醇提取液对白色念珠菌的抑制作用.结果筛选到一株胞内含有抗真菌活性物质的海洋放线菌Actinomycete A9,经10 L发酵罐发酵,将菌体甲醇提取物及发酵液乙酸乙酯萃取液浓缩合并,利用硅胶柱层析、葡聚糖凝胶柱层析Sephadex LH-20等分离纯化手段,最终获得1 mg浅黄色针状晶体的单一化合物,纯度为99.9%.同时,以ConA、LPS诱导的小鼠脾淋巴细胞增殖为模型,发现Actinomycete A9经硅胶柱层析分离后的抗真菌组分(10 μg/mL)能够抑制ConA、LPS诱导的小鼠脾淋巴细胞增殖,表明海洋放线菌Actinomycete A9的胞内活性物质具有抗真菌及免疫抑制活性,为后续研究奠定了基础.

  1. Optimization of Fermentation Conditions for Actinomycetes G5%拮抗农业致病菌放线菌G5发酵条件的优化

    Institute of Scientific and Technical Information of China (English)

    刘杨; 王勇; 康静芹; 张良

    2014-01-01

    微生物的发酵过程十分复杂,培养基配方的组成以及培养条件的变化都会对菌体的代谢造成很大的影响。为了使抗生素的产量达到最大化,试验运用了Plackett-Burman试验设计、最陡爬坡试验、Box-Behnken试验设计对放线菌(Actinomycetes)G5进行了发酵条件优化。利用Plackett-Burman试验设计对影响放线菌G5发酵的诸多相关因素进行评估并筛选出3个主要因素,即碳源含量、培养温度和培养时间;之后根据3个主要因素的作用大小和方向进行了最陡爬坡试验;最后运用Box-Behnken试验设计确定最优值,得出其最优培养条件为淀粉含量21.66 g/L、培养温度27.70℃、培养时间7.75 d。在此条件下,抗生素对苹果轮纹病菌的抑菌圈直径为23.00 mm,与模型预测值基本一致。%Microbial fermentation process were very complex due to effects of culture medium composition and culture condi-tions on cell metabolism. Fermentation conditions for actinomycetes G5 were optimized with Plackett-Burman experimental de-sign, steepest ascent experiments, and Box-Behnken design. Three main factors affecting the fermentation of actinomycetes G5 screened by Plackeet-Burman design were carbon content, temperature and culture days. Then the steepest ascent experiments were conducted based on the action degree and direction of the three main factors. The optimal conditions were finally deter-mined by Box-Behnken design. The results showed that the optimal fermentation condition for actinomycetes G5 were starch content of 21.66 g/L, culture temperature of 27.70℃ and culture days of 7.75 d. Under these conditions, the bacterial inhibi-tion diameter of the acquired antibiotics against physalospora piricola was 23.00 mm, equal to the model prediction.

  2. 秦岭太白山北坡土壤拮抗性放线菌分布及特性%Distribution and characteristics of soil antagonistic actinomycetes on northern slope of Taibai Mountain, Qinling

    Institute of Scientific and Technical Information of China (English)

    朱文杰; 薛泉宏; 曹艳茹; 薛磊; 申光辉; 来航线

    2011-01-01

    Twelve representative soil samples were collected from different altitudes on the northern slope of Taibai Mountain to study the distribution and characteristics of soil antagonistic actinomyces by using agar block method. There existed a great deal of soil antagonistic actinomyces in the study area. Among the 141 actinomycete strains isolated, 116 strains (82. 3% ) showed antagonism toward 12 target bacteria or fungi. The antagonistic strains at altitudes 800-1845, 3488, 3655, and 3670 m occupied 73.7% -86.8% , 81.3% , 78.9% and 82.3% of the total, respectively. 42. 1% of the strains at altitudes 1200-2300 m and >3400 m showed strong and broad spectrum antagonistic activity, suggesting that there was a great potential for the isolation of actinomycete strains with strong anti-biotic capability at these altitudes. 24. 1 % of the antagonistic actinomycetes showed antagonism against Staphyloccocus aureu, and 2.4% , 6.9% and 11. 2% of them showed activity toward Verticillium dahliae in cotton, Phytophthora sp. In strawberry and Neonectria radkiccla in ginseng, respectively. This study showed that the soil actinomycete antagonistic potentiality (SAAP) could be used as a quantitative indicator to evaluate the potential of antagonistic actinomycete resources in soil.%以太白山北坡12个不同海拔高度的代表性土样为研究对象,采用皿内琼脂块法筛选拮抗性放线茵.结果表明:在太白山北坡不同海拔高度土壤中生存着大量拮抗性放线菌,在分离出的141株放线菌中,有82.3%的放线菌对21种靶标菌有拮抗作用.其中,海拔800~1845、3488、3655和3670 m土壤中的拮抗性放线菌分别占其总数73.7%~86.8%、81.3%、78.9%及82.3%,在海拔1200~2300及3400 m以上土壤中分离到的广谱强拮抗性放线菌占其总数的42.1%.在拮抗性放线菌中,对金黄色葡萄球菌有强拮抗性的放线菌占拮抗菌总数的24.1%,对棉花黄萎病、草莓疫霉及人参

  3. The Screening of Antibacterial Antagonistic Actinomycetes and the Optimization of Fermentation Process%抗菌拮抗放线菌的筛选以及发酵工艺的优化

    Institute of Scientific and Technical Information of China (English)

    张辉; 杨俊青; 周天惠; 赵宝华

    2013-01-01

    从石家庄郊区常年种植且土壤板结的棉花地、重金属污染区、实验化学药品污染区、工业污水区等土壤中筛选出对致病真菌(以白色念珠菌为主)的拮抗性放线菌,利用静止悬浮微培养技术筛选到2株拮抗性放线菌.研究了摇床发酵的时间、温度、转速,发酵培养基的pH、碳源及氮源等理化因子对拮抗放线菌抑菌效果的影响;初步探讨了拮抗放线菌抑菌效果最适的摇床发酵条件.结果表明,拮抗放线菌的发酵产物对白色念珠菌、金黄色葡萄球菌等抑制作用明显,拮抗放线菌的最适发酵理化因子为时间96 h、温度29℃、转速220 r/min、发酵培养基pH7.1、最佳碳源为淀粉、最佳氮源为玉米浆.%Actinomycetes that are antagonistic to pathogenic fungi (especially Candida albicans) were screened from the soil in land that had been planted cotton perennially and had become hardened in Shijiazhuang suburb,and from soil in heavy metal-contaminated areas,laboratory chemicals-contaminated areas,and industrial sewage districts.High-throughput screening was performed through still suspension micro-culture technology.The impact of time,temperature,and rotational speed of fermentation in incubator shaker,and the pH,carbon source,nitrogen source,and other physical and chemical factors of fermentation media on the inhibitory effect of antagonistic actinomycetes were investigated.The optimum condition of antagonistic actinomycetes fermentation in incubator was also explored.The results indicated that the fermentation products of antagonistic actinomycetes had inhibitory effect on C.albicans,Staphylococcus aureus and other microbes;the optimum condition of antagonistic actinomycetes fermentation was determined to be fermentated at 29 ℃ and 220 r/min for 96 h,with the pH of the fermentation medium adjusted to 7.1,and with starch and corn syrup as the best carbon source and nitrogen source,respectively.

  4. Metabolomics of the Bio-Degradation Process of Aflatoxin B1 by Actinomycetes at an Initial pH of 6.0

    Directory of Open Access Journals (Sweden)

    Manal Eshelli

    2015-02-01

    Full Text Available Contamination of food and feed by Aflatoxin B1 (AFB1 is a cause of serious economic and health problems. Different processes have been used to degrade AFB1. In this study, biological degradation of AFB1 was carried out using three Actinomycete species, Rhodococcus erythropolis ATCC 4277, Streptomyces lividans TK 24, and S. aureofaciens ATCC 10762, in liquid cultures. Biodegradation of AFB1 was optimised under a range of temperatures from 25 to 40 °C and pH values of 4.0 to 8.0. An initial concentration of 20 µg/mL of AFB1 was used in this study. The amount of AFB1 remaining was measured against time by thin layer chromatography (TLC and high-performance liquid chromatography (HPLC, coupled with UV and mass spectrometry (LC-MS. All species were able to degrade the AFB1, and no significant difference was found between them. AFB1 remained in the liquid culture for R. erythropolis, S. lividans and S. aureofaciens were 0.81 µg/mL, 2.41 µg/mL and 2.78 µg/mL respectively, at the end of the first 24 h. Degradation occurred at all incubation temperatures and the pH with the optimal conditions for R. erythropolis was achieved at 30 °C and pH 6, whereas for S. lividans and S. aureofaciens the optimum conditions for degradation were 30 °C and pH 5. Analysis of the degradative route indicated that each microorganism has a different way of degrading AFB1. The metabolites produced by R. erythropolis were significantly different from the other two microorganisms. Products of degradation were identified through metabolomic studies by utilizing high-resolution mass spectral data. Mass spectrometric analysis indicated that the degradation of AFB1 was associated with the appearance of a range of lower molecular weight compounds. The pathway of degradation or chemical alteration of AFB1 was followed by means of high resolution Fourier transform mass spectrometry (HR-FTMS analysis as well as through the MS2 fragmentation to unravel the degradative pathway for

  5. Isolation and characterization of new p-Terphenyls with antifungal, antibacterial, and antioxidant activities from halophilic actinomycete Nocardiopsis gilva YIM 90087.

    Science.gov (United States)

    Tian, Shou-Zheng; Pu, Xiang; Luo, Guoyong; Zhao, Li-Xing; Xu, Li-Hua; Li, Wen-Jun; Luo, Yinggang

    2013-03-27

    A new p-terphenyl 1 and a novel p-terphenyl derivative 3 bearing a benzothiazole moiety were isolated from halophilic actinomycete Nocardiopsis gilva YIM 90087, along with known p-terphenyl 2, antibiotic novobiocin 4, cyclodipeptides 5-13, and aromatic acids 14 and 15. Their structures were elucidated on the basis of the interpretation of spectral data and by comparison of the corresponding data with those reported previously. The p-terphenyl 1 showed antifungal activity against the three pathogenic fungi, including Fusarium avenaceum, Fusarium graminearum, and Fusarium culmorum, that caused Fusarium head blight with minimal inhibitory concentrations (MICs) of 8, 16, and 128 μg/mL, respectively. Compound 1 showed antifungal activity against Candida albicans with a MIC of 32 μg/mL and antibacterial activity against Bacillus subtilis with a MIC of 64 μg/mL. Novobiocin 4 showed antifungal activity against Pyricularia oryzae with a MIC of 16 μg/mL and antibacterial activity against B. subtilis with a MIC of 16 μg/mL and Staphylococcus aureus with a MIC of 64 μg/mL. The 1,1-diphenyl-2-picryl-hydrazyl assay suggested that 1, 3, and 4 exhibited 54.9% (2 mg/mL), 14.3% (4 mg/mL), and 47.7% (2 mg/mL) free radical scavenging activity, respectively. The positively charged 2,2'-azino-bis-3-ethylbenzothiazoline-6-sulfonic acid radical (ABTS(+•)) scavenging assay indicated that 1, 3, 4, and 8 exhibited 68.6% (1 mg/mL), 28.4% (2 mg/mL), 78.2% (0.5 mg/mL), and 54.6% (2 mg/mL) ABTS(+•) scavenging capacity, respectively. The superoxide anion radical scavenging assay suggested that 4 exhibited 77.9% superoxide anion radical scavenging capacity at 2 mg/mL. N. gilva YIM 90087 is a new resource for novobiocin 4. PMID:23441911

  6. Screening of Rhizospheric Actinomycetes for Various In-vitro and In-vivo Plant Growth Promoting (PGP) Traits and for Agroactive Compounds.

    Science.gov (United States)

    Anwar, Sumaira; Ali, Basharat; Sajid, Imran

    2016-01-01

    In this study 98 rhizospheric actinomycetes were isolated from different wheat and tomato fields, Punjab, Pakistan. The isolates were characterized morphologically, biochemically, and genetically and were subjected to a comprehensive in vitro screening for various plant growth promoting (PGP) traits. About 30% of the isolates screened were found to be the promising PGP rhizobacteria (PGPRs), which exhibited maximum genetic similarity (up to 98-99%) with different species of the genus Streptomyces by using16S rRNA gene sequencing. The most active indole acetic acid (IAA) producer Streptomyces nobilis WA-3, Streptomyces Kunmingenesis WC-3, and Streptomyces enissocaesilis TA-3 produce 79.5, 79.23, and 69.26 μg/ml IAA respectively at 500 μg/ml L-tryptophan. The highest concentration of soluble phosphate was produced by Streptomyces sp. WA-1 (72.13 mg/100 ml) and S. djakartensis TB-4 (70.36 mg/100 ml). All rhizobacterial isolates were positive for siderophore, ammonia, and hydrogen cyanide production. Strain S. mutabilis WD-3 showed highest concentration of ACC-deaminase (1.9 mmol /l). For in-vivo screening, seed germination, and plant growth experiment were conducted by inoculating wheat (Triticum aestivum) seeds with the six selected isolates. Significant increases in shoot length was observed with S. nobilis WA-3 (65%), increased root length was recorded in case of S. nobilis WA-3 (81%) as compared to water treated control plants. Maximum increases in plant fresh weight were recorded with S. nobilis WA-3 (84%), increased plant dry weight was recorded in case of S. nobilis WA-3 (85%) as compared to water treated control plants. In case of number of leaves, significant increase was recorded with S. nobilis WA-3 (27%) and significant increase in case of number of roots were recorded in case of strain S. nobilis WA-3 (30%) as compared to control plants. Over all the study revealed that these rhizospheric PGP Streptomyces are good candidates to be developed as

  7. Screening of rhizospheric actinomycetes for various in-vitro and in-vivo plant growth promoting (PGP traits and for agroactive compounds

    Directory of Open Access Journals (Sweden)

    Sumaira Anwar

    2016-08-01

    Full Text Available In this study 98 rhizospheric actinomycetes were isolated from different wheat and tomato fields, Punjab, Pakistan. The isolates were characterized morphologically, biochemically and genetically and were subjected to a comprehensive in vitro screening for various plant growth promoting (PGP traits. About 30% of the isolates screened were found to be the promising plant growth promoting rhizobacteria (PGPRs, which exhibited maximum genetic similarity (up to 98-99% with different species of the genus Streptomyces by using16S rRNA gene sequencing. The most active indole acetic acid (IAA producer Streptomyces nobilis WA-3, Streptomyces Kunmingenesis WC-3 and Streptomyces enissocaesilis TA-3 produce 79.5, 79.23 and 69.26 µg/ml IAA respectively at 500µg/ml L-tryptophan. The highest concentration of soluble phosphate was produced by Streptomyces sp. WA-1 (72.13 mg/100ml and S. djakartensis TB-4 (70.36 mg/100ml. All rhizobacterial isolates were positive for siderophore, ammonia and hydrogen cyanide production. Strain S. mutabilis WD-3 showed highest concentration of ACC-deaminase (1.9 mmol /l. For in-vivo screening, seed germination and plant growth experiment were conducted by inoculating wheat (Triticum aestivum seeds with the six selected isolates. Significant increases in shoot length was observed with S. nobilis WA-3 (65 %, increased root length was recorded in case of S. nobilis WA-3 (81 % as compared to water treated control plants. Maximum increases in plant fresh weight were recorded with S. nobilis WA-3 (84 %, increased plant dry weight was recorded in case of S. nobilis WA-3 (85 % as compared to water treated control plants. In case of number of leaves, significant increase was recorded with S. nobilis WA-3 (27 % and significant increase in case of number of roots were recorded in case of strain S. nobilis WA-3 (30 % as compared to control plants. Over all the study revealed that these rhizospheric plant growth promoting (PGP Streptomyces

  8. Diversity Analysis of Endophytic Actinomycetes Isolated from Sophora alopecuroides L.of Lingwu Baijitan National Nature Reserve in Ningxia%宁夏灵武白芨滩国家级自然保护区苦豆子内生放线菌区系分析

    Institute of Scientific and Technical Information of China (English)

    顾沛雯; 郝丽; 徐润; 马海龙; 胡美娟

    2011-01-01

    从宁夏灵武白芨滩国家级自然保护区不同土壤类型、不同优势植被的6个样区,采集苦豆子种子及健康植株60份,分离出内生放线菌288株.鉴定表明,同一植株不同组织中,内生放线菌数量以根部最多,其次为种子,叶部最少;淡灰钙土中苦豆子内生放线菌数量比风沙土中多;旱中生杂类草沙生植被草原苦豆子内生放线菌数量最多.各样区苦豆子共分离出11个属的内生放线菌,以链霉菌属和诺卡氏菌属为优势属,其中链霉菌属以白孢类群和灰褐类群为主.%The 288 endophytic actinomycetes were separated and cultivated from 60 samples of healthy seeds and plant of Sophora alopecuroid.es L. In six sample areas, where were sampled from different vegetations and the soil types in Lingwu Baijitan National Nature Reserve of Ningxia. Endophytic actinomycetes were classified according to their morphological characteristics. The results showed that the quantities of endophytic actinomycetes from different parts of S. Alopecuroid.es L. Were varied and there were more endophytic actinomycetes in the roots than that in the seeds and leafs for the same plant. The quantities of endophytic actinomycetes from S. Alopecuroides L. Were significantly more in sierozem than that in aeolian and the salinized sandy soil. There were the most endophytic actinomycetes from S. Alopecuroides L. In the desert steppe with xerophytic mesophytic sandy weeds than that in the other five desert steppe types. These endophytic actinomycetes from S. Alopecuroides L. In the desert steppe of Lingwu Baijitan National Nature Reserve were attributed to 11 genus. Stretomyces and Norcardia were dominant. Albacores and Greyosporus were dominant in Stretomyces.

  9. 放线菌剂与腐植酸钾对魔芋抗病促生效果研究%Study of Combined Application of Actinomycetes Biocontrol Agents and Potassium Humate on Disease Resistance and Growth-promoting Effect of Amorphophallus Konjac

    Institute of Scientific and Technical Information of China (English)

    张忠良; 刘列平; 何斐

    2014-01-01

    分别以不施菌剂、不施腐植酸钾为对照,采用小区试验,探讨生防放线菌剂与腐植酸钾配施条件下二者对魔芋的防病促生作用。试验结果表明:(1)​当腐植酸钾与3号放线菌配施时,具有较强的防病促生作用。30克/株、60克/株、90克/株腐植酸钾分别配施3号菌剂时,与不施腐植酸钾对照相比,魔芋病害相对防效、增产率及增长系数分别提高了9.8%~41.6%、17.1%~76.3%和20.1%~64.2%。其中,60克/株腐植酸钾配施3号菌剂时效果最明显。(2)​当放线菌剂与腐植酸钾配施时,具有较强的防病促生作用。1、2、3号放线菌剂与60克/株腐植酸钾配施,与不施菌剂对照相比,魔芋病害相对防效、增产率及增长系数分别提高了11.7%~89.7%、33.3%~150.9%和38.5%~175.0%。其中2、3号放线菌剂与60克/株腐植酸钾配施处理效果较好。研究表明,腐植酸钾与放线菌剂配施能促进魔芋生长,提高魔芋产量,降低发病率。%With no actinomycetes and potassium humate treatments as control(CK), the effect of actinomycetes and potassium humate on disease resistance and growth-promoting of Amorphophallus konjac in the plot trials were evalu-ated. Results showed that:(1) Combined application of potassium humate and actinomycetes No.3 had strong disease resistance and growth-promoting effect. Under 30, 60, 90 gram per plant of potassium humate combined with actinomy-cetes No.3 treatment, biocontrol effect increased by 9.8%~41.6%, yield increased by 17.1%~76.3%and growth factor increased by 20.1%~64.2% compared with the group without potassium humate. Among which, the combined ap-plication of 60 gram per plant of potassium humate and actinomycetes No.3 had the most obvious effect. (2) Combined application of actinomycetes and potassium humate had signiifcant anti-disease and growth-promoting effect. Three kind of actinomycetes combined with 60 gram per plant of potassium

  10. Study of Combined Application of Actinomycetes Biocontrol Agents and Potassium Humate on Disease Resistance and Growth-promoting Effect of Amorphophallus Konjac%放线菌剂与腐植酸钾对魔芋抗病促生效果研究

    Institute of Scientific and Technical Information of China (English)

    张忠良; 刘列平; 何斐

    2014-01-01

    With no actinomycetes and potassium humate treatments as control(CK), the effect of actinomycetes and potassium humate on disease resistance and growth-promoting of Amorphophallus konjac in the plot trials were evalu-ated. Results showed that:(1) Combined application of potassium humate and actinomycetes No.3 had strong disease resistance and growth-promoting effect. Under 30, 60, 90 gram per plant of potassium humate combined with actinomy-cetes No.3 treatment, biocontrol effect increased by 9.8%~41.6%, yield increased by 17.1%~76.3%and growth factor increased by 20.1%~64.2% compared with the group without potassium humate. Among which, the combined ap-plication of 60 gram per plant of potassium humate and actinomycetes No.3 had the most obvious effect. (2) Combined application of actinomycetes and potassium humate had signiifcant anti-disease and growth-promoting effect. Three kind of actinomycetes combined with 60 gram per plant of potassium humate treatment, biocontrol effect increased by 11.7%~89.7%, yield increased by 33.3%~150.9% and growth factor increased by 38.5%~175.0% compared with the group without actinomycetes. In particular, No. 2 and No. 3 actinomycetes had obvious effect. These results sug-gested that the combined application of actinomycetes and potassium humate not only promoted A. konjac growth and yield, but also reduced the incidence of disease.%分别以不施菌剂、不施腐植酸钾为对照,采用小区试验,探讨生防放线菌剂与腐植酸钾配施条件下二者对魔芋的防病促生作用。试验结果表明:(1)​当腐植酸钾与3号放线菌配施时,具有较强的防病促生作用。30克/株、60克/株、90克/株腐植酸钾分别配施3号菌剂时,与不施腐植酸钾对照相比,魔芋病害相对防效、增产率及增长系数分别提高了9.8%~41.6%、17.1%~76.3%和20.1%~64.2%。其中,60克/株腐植酸钾配施3号菌剂时效果最明显。(2)​当放线菌剂与腐植酸钾配施

  11. 青岛泊子盐场放线菌多样性及其功能酶的筛选%Biodiversity of actinomycetes from Pozi saltern in Qingdao and the screening for functional enzymes

    Institute of Scientific and Technical Information of China (English)

    常显波; 刘文正; 张晓华

    2015-01-01

    In this study ,15 actinomycetes were isolated using three different media (M1~M3 ) from a salt pond of Qingdao .Bioinformatics analysis of the 16S rRNA sequences from the isolates revealed they belonged to three genera (Streptomyces ,Nocardiopsis and a novel genus) ,with Streptomyces being the dominant genus .The strain CXB832 were 95 .4 % and 94 .9 % homologous to the two standard strains of bacteria ,and therefore was candidates for a new genus on the basis of phenotypic ,chemotaxonomic and phylogenetic distinctiveness .The type of medium and temperature showed significant effects on the number and diversity of actinomycetes recovered .Starch casein medium was the most effective media to isolate actinomycetes species at 37℃ .12 ,3 ,2 and 1 of 15 isolates produces amylase ,lipase ,caseinase and cellulose ,respectively .%采用平板涂布法利用3种培养基从青岛即墨市田横镇泊子盐场盐池底泥样中共分离纯化出15株放线菌,对分离菌株进行16S rRNA基因测序分析。发现这15株放线菌分属于链霉菌属( Streptomyces )、拟诺卡氏菌属(Nocardiopsis)和1个新属,其中 Streptomyces属为优势菌属;菌株CXB832与 Nocardiopsis arabia DSM 45083T和 Haloacti-nospora albus DSM 45015T最接近,同源性分别为95.4%和94.9%,根据其表型和分子特征可以初步判定该菌株为放线菌新属。培养基及培养温度对盐池环境中放线菌的分离效果均有影响,利用淀粉酪素培养基在37℃分离的放线菌种类和数量较多。在15株放线菌中,分别有12株、3株、2株和1株放线菌产淀粉酶、酯酶、蛋白酶和纤维素酶。

  12. Fatty acid biosynthesis in actinomycetes

    OpenAIRE

    Gago, Gabriela; Diacovich, Lautaro; Arabolaza, Ana; Tsai, Shiou-Chuan; Gramajo, Hugo

    2011-01-01

    All organisms that produce fatty acids do so via a repeated cycle of reactions. In mammals and other animals, these reactions are catalyzed by a type I fatty acid synthase (FAS), a large multifunctional protein to which the growing chain is covalently attached. In contrast, most bacteria (and plants) contain a type II system in which each reaction is catalyzed by a discrete protein. The pathway of fatty acid biosynthesis in Escherichia coli is well established and has provided a foundation fo...

  13. Glucose oxidase activity of actinomycetes.

    Science.gov (United States)

    St Vlahov, S

    1978-01-01

    The ability of 311 actiomycete, belonging to 12 species to produce glucose oxidase was studied. It was found that 174 of them formed exoenzymes on solid medium and 133 in liquid medium. The composition of the nutrient medium has an essential effect on the amount of enzyme formed. Strains with considerably higher activity form a greater amount of exoenzymes on soya meal medium and on synthetic medium with KNO2. The highest activity of the culture liquid of some strains was observed between the 6th and 7th day of cultivation. During this phase of growth the highest productivity of the biomas was established. PMID:76424

  14. Efecto rizosférico de Parmelia sp y Solanum lixioides sobre actinomicetos y ensayos de antibiosis in vitro Rhizozpheric effect of Parmelia sp and Solanum lixioides on actinomycetes and their in vitro antimicrobial activity

    Directory of Open Access Journals (Sweden)

    Zárate Lyda

    1999-11-01

    Full Text Available

    La presencia de actinomicetos en muestras de suelo alrededor de raíces y rizoides de Parmelia sp y de Solanum lixioides fue investigado. 5e evaluó el efecto rizosférico del liquen Parmelia sp sobre poblaciones de actinomicetos con un R/5 ~ 2.5, mientras el radio R/5 resultante en S.lixioides fue <1. En los ensayos de antibiosis los mejores resultados se obtuvieron al modificar el medio de cultivo, o medio mínimo de Hopwood (1967, con relación a medio estándar. Se determinó el espectro de actividad antibiótica de 9 aislamientos, sobre organismos Gram positivos: Staphylococcus aureus, Bacillus subtilis y Gram negativos: Escherichia coli, Klebsiella pneumoniae y Pseudomonas aeruginosa. Los aislamientos A-2, A-4, A-5 YA-6 presentaron un amplio espectro de actividad antimicrobiana sobre E. coli, B. subtilis y K. pneumoniae. A-11, presentó una antibiosis selectiva y en grado alto sobre P. aeruginosa.

    The occurrence of actinomycetes from rhizospheric soils of Parmelia sp and Solanum lixioides was investigated. The rhizospheric effect from Parmelia sp (Lichen upon actinomycetes isolates was evaluated and was (R/5 ~ 2.5, while by the solanaceae the resultant ratio R/5 was <1. For the antibiosis assays the better results were obtained by moditying the culture médium (Hopwood minimun medium, 1967. The antimicrobial activity from nine isolates against Staphylococcus aureus, Bacillus subtilis, Escherichia coli, Klebsiella pneumoniae; Pseudomonas aeruginosa was determined. A-2, A-4, A-S and A-6 isolates showed a broad spectrum of antimicrobial activity, while A-'Il showed a selective antimicrobial activity against P. aeruginosa.

  15. Efficacy of fermenting liquor of one antagonistic actinomycete on experimental colibacillosis in chicken%一株拮抗放线菌发酵液对试验性鸡大肠杆菌病的疗效试验

    Institute of Scientific and Technical Information of China (English)

    傅艳萍; 孙斌; 来航线; 王晶钰

    2009-01-01

    对一株具有抑菌效果的放线菌发酵液用于治疗鸡大肠杆菌病的疗效进行了研究.采用人工感染诱发鸡大肠杆菌病造模,分别以放线菌发酵液与氟苯尼考进行预防和治疗试验.结果显示,放线菌发酵液治疗组与氟苯尼考低剂量(5 mg/kg)组的大肠杆菌病治疗效果相当,差异不显著;放线菌发酵液预防组与感染对照组在死亡率、治愈率和增重方面差异显著.证实,试验所用的放线菌发酵液可用于治疗和预防人工诱发的O_(89)血清型鸡大肠杆菌病.%Avian colibacillosis induced by the experimental infection method was treated and prevented using the fermenting liquor of antagonistic actinomycetes and florfenieol. The fermenting liquor treatment group (5 mg/kg) had similar therapeutic effect to the low dose of florfenicol group,and the difference be-tween the two groups was not significant(P>0.05). The difference between the fermenting liquor preven-tion group and the infection control group was significant in mortality,cure rate,and weight gain. The re-sults showed that this fermenting liquor of actinomycete could treat and prevent O_(89) serotype avian coliba-cillosis induced by experimental infection.

  16. Isolation of marine actinomycetes and studies on the secondary metabolites of strain Streptomyces sp.AH17-3%海洋放线菌分离及菌株Streptomyces sp.AH17-3的次级代谢产物研究

    Institute of Scientific and Technical Information of China (English)

    崔萌纳; 袭蕊; 李德海; 顾谦群; 朱天骄

    2012-01-01

    Objective To isolate actinomycetes strains from marine samples and study on the secondary metabolites of one marine-derived actinomycete. Methods The extract of the actinomycetes was purified by solvent extraction, column chromatography and preparative HPLC. The structures were established by physicochemical properties and spectral analysis, and comparison with the data of literatures. The proliferation inhibition activities were evaluated by SRB method. Results The 174 actinomycetes were i-solated from the marine samples, four polyketide compounds were identified as germicidin A(1), ger-micidin B (2), daidzein (3), genistein (4). And the compound 1 showed weak cytotoxic activities, its IC50 was 3. 5 × 10-7M. Conclusion The marine-derived actinomycetes were important microbial resources of medicine, and compounds 1 and 2 were isolated from marine-derived actinomycetes for the first time.%目的 对海洋放线菌进行分离及抗肿瘤活性筛选,并对一株具有抗肿瘤活性的海洋放线菌AH17-3的次级代谢产物进行研究.方法 采用溶剂萃取、柱色谱层析及制备HPLC等方法对菌株AH17-3的发酵产物进行化学分离,通过理化性质及波谱学方法并参阅文献进行化合物结构鉴定,以SRB法评价化舍物的抗肿瘤活性.结果 从海洋样品中分离放线菌174株,从菌株AH17-3中分离得到了4个聚酮类化合物,经鉴定其结构分别为germicidin A(1)、germicidin B(2)、daidzein(3)、genistein(4).其中化合物1具有弱的细胞毒活性,其IC50为3.5×10-7M.结论 海洋放线菌是重要的药用微生物资源,化合物1,2均为首次从海洋放线菌中分离得到.

  17. Preliminary Identification of Six Antagonistic Actinomycetes in Soil Determination of Its Fungicidal Activities%6株土壤拮抗放线菌的初步鉴定及其抗菌活性测定

    Institute of Scientific and Technical Information of China (English)

    龙建友; 夏建荣

    2011-01-01

    [目的]初步鉴定6株放线菌种类,并测定其发酵产物的抗菌活性.[方法]采用形态学方法鉴定6株放线菌菌株种类,以抑制菌丝生长速率法、孢子萌发法、盆栽和大田试验系统测定6株放线菌菌株发酵产物的杀菌活性.[结果]形态学初步鉴定结果表明,6株菌株属于链霉菌属.生物测定结果表明,500 μg/ml的6株放线菌发酵产物,对棉花枯萎病菌的菌丝生长抑制率均在90%以上;对番茄灰霉病菌、烟草赤星病菌、南瓜枯萎病菌的菌丝生长抑制率也在80%以上.其中,GZ-204和GZ-331菌株发酵产物对小麦根腐病菌和玉米弯孢叶斑病菌的孢子萌发抑制率分别为97.8%、98.2%和99.5%、94.6%.盆栽试验结果表明,GZ-204和GZ-331菌株发酵产物对小麦白粉病的保护效果分别为78.8%和87.1%,治疗效果为62.4%和68.5%.田间试验结果表明,GZ-204和GZ-331菌株发酵200倍稀释液对小麦白粉病的防治效果分别达50.5%,69.2%.[结论]研究结果为新型土壤放线菌源农药的研制奠定了基础.%[ Objective ] The paper was to preliminarily identify the species of six strains of actinomycetes, and to determine the fungicidul activities of their fermentation products. [ Method] The species of six strains of actinomycetes were identified by morphological method, and the fungicidal activities of the fermentation products of six strains of actinomycetes were systematically determined by series of methods including mycelial growth rate inhibition method, spore germination method, pottirg and field test. [ Result] Morphological identification results showed that six strains belonged to streptomyces. Biological determination results indicated that the inhibition rates of the fermentation products of six strains of actinomycetes with the concentration of 500 μg/ml against the mycelial growth of Fusarium oxysporum f. sp. Vasinfectum were all greater than 90%; the inhibition rates against the mycelial growth of Botrytis

  18. The Study on Antifungal Activity and Screening of Actinomycete X1 Strain from Soil%土壤放线菌X1的筛选及其抑菌活性初探

    Institute of Scientific and Technical Information of China (English)

    徐路明; 郝明亮; 王金果; 王桂芳; 罗兰

    2011-01-01

    Screening antifungal actinomycetes are foundation of agricultural antibiotics exploitation. The antifungal activity of 6 strains actinomycetes from soil were studied by mycelium growth rate, spore germination test. The antifungal activities of different extracts of actinomycete X1 strain were studied. The results of mycelium growth rate showed that the Xl strain displayed a broad spectrum inhibitory activity to all the tested 12 plant pathogenic fungi, of which the inhibition rate against 3 pathogens were 100%, such as Valsa mali, Physalospora piricola and Coniella diplodiella. The results of spore germination test demonstrated that the X1 strain also had an inhibition rate of 100% against germination of spores of Fusarium oxysporum. The inhibition rate to 3 plant pathogens was over 90% with ethyl acetate of Xl strain at the concentration of 1 mg/mL. The X1 strain displayed a broad spectrum inhibitory activity, which had great potential for controlling plant pathogens.%筛选具有抑菌活性的放线茵是开发农用活性抗生素的基础.笔者采用生长速率法和孢子萌发法,测定了从土壤中分离出的6株拮抗放线茵的抑菌活性,并对抑茵活性较好的放线茵X1菌株进行初步研究.生长速率法试验表明,放线茵X1菌株发酵液对供试12种植物病原茵茵丝生长均有不同程度的抑制作用,发酵液对苹果腐烂病菌、苹果轮纹病菌和葡萄白腐病茵茵丝的抑制率均为100%.孢子萌发试验表明,放线茵X1菌株发酵液对黄瓜枯萎病菌孢子萌发的抑制率为100%.在浓度为1 mg/mL时,放线茵X1菌株发酵液乙酸乙酯萃取物对苹果腐烂病菌、苹果轮纹病菌和葡萄白腐病菌茵丝的抑菌率均大于90%.放线茵X1菌株抑茵谱较广,对植物病茵的防治有很大的研究开发潜力.

  19. Identification and evaluation of physiologically active root endophytic actinomycetes from mangrove plants in Hainan Province%红树植物根内生放线茵的分离鉴定及其生理活性的评价

    Institute of Scientific and Technical Information of China (English)

    唐依莉; 谢修超; 洪葵

    2012-01-01

    A total of 138 root endophytic actinomycete strains were successfully isolated using 1/10ATCC 172 medium from the roots of 18 mangrove plants and 3 semi-mangrove plants in Hainan Province. Analysis of 16S rRNA gene sequences of these isolates showed that the isolates belonged to members of the genera Jishengella, Micromonospora and Streptomycetes. Bioactivity tests were carried out on all the isolated endophytic actinomycete fermentation liquids. Of all the isolates forty strains showed citotoxities to hepatocarcinoma cell line SMMC-7721 cell, and twenty seven strains were active against methicillin-resistant Staphylococcus aureus 9551 (MRSA). The strains isolated from the mangroves showed no bioactivity against Candida albicans ATCC 10231. Sodium chloride tolerance test for 88 isolates indicated that 77 isolates were halo-tolerant or halophilic, 2 isolates of which exhibited the highest tolerance to p(NaCI) = 150 g ·L-1 and 54 isolates grew well on the medium containing p (NaCl) =33 g ·L-1.%采集海南文昌清澜港头苑村红树林保护区的18种红树植物和3种半红树植物的根部样品,用1/10ATCC172培养基共分离到138株内生放线菌。经初步鉴定,分离到的138株内生放线菌分别属于继生菌属、小单胞菌属和链霉菌属3个属。对分离到的内生放线菌进行体外细胞毒活性和抗菌活性检测,结果表明,对肝癌SMMC-7721细胞有细胞毒活性的菌株有40株,抗MRSA活性的菌株有27株,所有测试菌株均未检测到抗白色念珠菌活性。对88株菌进行耐盐性检测,77株菌表现出耐盐或嗜盐特征,其中2株最高耐盐质量浓度ρ(NaCl)=150g·L-1,54株菌可在含有P(NaCl)=33g·L-1的培养基上生长良好。

  20. 土壤放线菌K2的筛选、鉴定及其抑菌活性初探%The Study on Antifungal Activity, Screening and Identification of Actinomycete K2 Strain from Soil

    Institute of Scientific and Technical Information of China (English)

    赵丽坤; 田永强; 高磊; 孙盈

    2013-01-01

      筛选具有抑制植物病原菌活性的放线菌是农用抗生素开发的基础。通过平板对峙法筛选出8株拮抗放线菌菌株,采用生长速率法测定获得一株对植物病原菌有较好抑菌作用的菌株K2,并采用抑制菌丝生长速率法对其抑菌谱进行研究,以及进行菌种鉴定。生长速率法试验表明,放线菌菌株K2发酵液对10种供试植物病原菌菌丝生长均有不同程度的抑制作用,其中以对尖孢镰刀菌(Fusarium oxysporum)抑制效果最好,抑菌率可达57.38%。根据形态学特征、生理生化特征和基于16S rDNA序列比对,鉴定菌株 K2属于链霉菌属(Streptomyces)的一个菌株。放线菌 K2的代谢产物具有较广的抑菌谱,对植物病原菌的防治有很大的研究开发潜力。%Screening antifungal actinomycetes were the foundation of agricultural antibiotics exploitation. The antifungal activity of 8 strains actinomycetes were studied by flat confrontation, one strain named K2 was got by mycelim growth rate, its antimicrobial spectrum was studied and strains identification with mycelim growth rate. The result of mycelium growth rate showed that K2 had a broad spectrum inhibitory activity to all the tested 10 plant pathogenic fungi. Among these, activity against Fusarium oxysporum was the highest with inhibition rate of 57.38%. The results based on morphological characteristics, physiological and biochemical characterization and 16S rDNA sequence analysis of strain K2 showed that it was possibly Streptomyces. The K2 strain displayed a broad spectrum inhibitory activity, which had great potential for controlling plant pathogens.

  1. Potencialidade de um actinomiceto de rizosfera de tomateiro como agente de biocontrole de doenças Potenciality of an actinomycete from tomato rhizosphere as a biocontrol agent for tomato diseases

    Directory of Open Access Journals (Sweden)

    Renato Carrer Filho

    2009-09-01

    Full Text Available Um actinomiceto (Streptomyces setonii, isolado 'UFV-RD1', obtido de rizosfera de planta sadia de tomateiro, foi selecionado dentre outros 117, como promissor agente de biocontrole de enfermidades da cultura. Em testes de antagonismo in vitro contra patógenos do tomateiro, o isolado 'UFV-RD1' foi incapaz de inibir o crescimento de bactérias (Pseudomonas syringae pv. tomato, Ralstonia solanacearum, Pectobacterium carotovorum subsp. carotovorum, Xanthomonas campestris pv. vesicatoria mas inibiu a germinação de conídios de alguns fungos (Alternaria solani, Phytophthora infestans, Corynespora cassiicola, Stemphylium solani. Em ensaios de biocontrole experimental in vivo, em casa de vegetação, o actinomiceto foi efetivo em reduzir a severidade de sintomas no caso de patógenos fúngicos e bacterianos testados como desafiantes. A campo, quando A. solani e P. infestans ocorreram naturalmente, as plantas originárias de sementes microbiolizadas com propágulos da estirpe 'UFV-RD1' exibiram sintomas menos severos que as plantas controle para o caso da pinta preta. O agente de biocontrole é promissor para futuros protocolos de manejo integrado, como forma de reduzir a quantidade de defensivos utilizados.An actinomycete (Streptomyces setonii, isolate 'UFV-RD1', isolated from the rhizosphere of a healthy tomato plant was selected out of 117 as a promising biocontrol agent for tomato diseases. In in vitro antagonism tests against tomato pathogens, the isolate 'UFV-RD1' was unable to inhibit growth of bacterial pathogens (Pseudomonas syringae pv. tomato, Ralstonia solanacearum, Pectobacterium carotovorum subsp. carotovorum, Xanthomonas campestris pv. vesicatoria but inhibited conidium germination of fungi (Alternaria solani, Phytophthora infestans, Corynespora cassiicola, Stemphylium solani. Experimental biocontrol assays in a greenhouse indicated that the actinomycete was effective for reducing symptom severity in the case of bacteria and fungi tested

  2. 产抗生素南极海洋放线菌的筛选及培养条件优化%Screening and Optimization of Culture Conditions of Antarctic Marine Actinomycete Producing Antibiotics

    Institute of Scientific and Technical Information of China (English)

    彭彬; 孙超

    2013-01-01

    对32株南极海洋放线菌进行抑菌活性实验,筛选出3株具有一定抑菌活性的放线菌,分别命名为GD-F1、GD-F2和GD-F3,其中GD-F2的抑菌活性较高;探讨了碳源、氮源、pH值等条件对GD-F2产抗生素的影响,确定GD-F2产抗生素的最佳培养条件为:碳源为可溶性淀粉、氮源为大豆粉或酵母膏、用天然海水和蒸馏水各一半配制培养基、无机盐浓度为改良高氏一号培养基的一半、pH值为7.0,为南极海洋放线菌的机理研究和应用奠定了基础.%The antibiotic activity of 32 strains of antarctic marine Actinomycete were tested and 3 strains GD-F1,GD-F2,GD-F3 with antibiotic activity were screened,among which strain GD-F2 had the highest antibiotic activity. The culture conditions for strain GD-F2 were obtained as follows; with soluble starch as carbon source,with bean powder or yeast extract as nitrogen source,the medium with pH value of 7. 0 was made with natural sea water-distilled water(1: 1) ,the concentrations of inorganic salts were half of those of improved Gao No. 1 culture medium. This study will lay the foundation for adaptation mechanism research and biotechnologi-cal application of antarctic marine Actinomycete.

  3. The Effects of Antagonistic Actinomycetes G19 on Microbial Diversity in Replanted Peach Rhizosphere%拮抗放线菌G19对模拟再植毛桃根际微生物多样性的影响

    Institute of Scientific and Technical Information of China (English)

    邸宁; 刘志民; 马焕普

    2011-01-01

    为了了解不同处理对微生物多样性变化的影响,试验采用Biolog技术对施用拮抗放线菌发酵液后的毛桃根际微生物的多样性进行了分析,结果表明:施放线菌G-19后,其根际细菌和放线菌数量增加,真菌数量明显减少,与正常土的变化趋势相似;再植土则相反,真菌数量大幅上升,细菌数量下降.微生物代谢活性及微生物群落多样性指数显示施用了放线菌G-19的根际微生物也是最丰富和稳定的,毛桃幼苗的生长也以施放线菌G-19发酵液的效果最好,这说明拮抗放线菌G-19有改善桃再植土壤微生态的作用.%The aim was to compare the difference in microbial diversity of different treatments. In this study, microbial diversity of peach rhizosphere which fermented antagonistic actinomycetes was measured by Biolog Eco plate facilities. The results showed that the number of bacteria and actinomycetes in peach rhizosphere increased significantly and the number of fungi decreased. That was similar to the normal soil. By contrast, the number of fungi increased significantly and the number of bacteria and actinomycetes decreased in replant soil. Microbial metabolic activity and microbial community diversity index application of actinomycetes G19 in rhizosphere microorganisms was the most abundant and stable. Seedling growth of peach was the best after strains G19 fermentation broth treatment. It indicated that antagonistic actinomycetes G19 could improve the ecological environment of the soil in replant peach rhizosphere.

  4. Dicty_cDB: Contig-U13374-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available 667_3335( CP000667 |pid:none) Salinispora tropica CNB-440, co... 37 0.65 EF610853_1( EF610853 |pid:none) Anoche...tus sp. Mad-01 cytochrome ox... 37 0.66 EF610856_1( EF610856 |pid:none) Anochetus sp. Mad-01 cytochrome o...x... 37 0.66 EF610849_1( EF610849 |pid:none) Anochetus sp. Mad-01 cytochrome ox... 37 0.66 EF610846_1( EF610846 |pid:none) Anoche...tus sp. Mad-01 cytochrome ox... 37 0.66 EF610861_1( EF610861 |pid:none) Anoche..._5228( CP000473 |pid:none) Solibacter usitatus Ellin6076, ... 36 1.5 EF610886_1( EF610886 |pid:none) Anochet

  5. Estudio de actinomicetos marinos aislados de la costa central del Perú y su actividad antibacteriana frente a Staphylococcus aureus Meticilina Resistentes y Enterococcus faecalis Vancomicina Resistentes Study of marine actinomycetes isolated from the central coast of Peru and their antibacterial activity against Methicillin-Resistant Staphylococcus aureus and Vancomycin-Resistant Enterococcus faecalis

    Directory of Open Access Journals (Sweden)

    Jorge León

    2011-06-01

    Full Text Available Objetivos. Determinar el potencial antimicrobiano de actinomicetos marinos frente a cepas S. aureus meticilino-resistentes (MRSA y E. faecalis vancomicina-resistentes (VRE. Materiales y métodos. En dos medios de cultivo se sembraron 29 cepas de actinomicetos aislados de sedimento marino. Se evaluó la capacidad inhibitoria mediante pruebas de antagonismo in vitro para MRSA y VRE. Se procesó los extractos orgánicos de tres actinomicetos seleccionados para determinar la Concentración Mínima Inhibitoria (CMI del compuesto activo. Resultados. La mayoría de los actinomicetos aislados correspondieron a un grupo homogéneo de blanco-grisáceos (62% con buen nivel de crecimiento en agar marino. Los porcentajes inhibitorios fueron superiores a 85% para ambos patógenos con halos de inhibición mayores a 69 y 78 mm de diámetro para MRSA y VRE respectivamente. Los extractos diclorometánicos de tres de los actinomicetos aislados (I-400A, B1-T61, M10-77 mostraron gran potencial inhibitorio de ambos patógenos, siendo M10-77 la cepa de actinomiceto de mayor actividad antibiótica frente a S. aureus ATCC 43300 resistente a meticilina y E. faecalis ATCC 51299 resistente a vancomicina con una Concentración Mínima Inhibitoria (CMI de 7,9 y 31,7 μg/ mL respectivamente. El análisis filogenético de la cepa M10- 77 presenta un 99% de similaridad con la especie marina Streptomyces erythrogriseus. Conclusiones. El sedimento marino de la costa central del Perú es fuente promisorio de cepas de actinomicetos con gran capacidad de producir compuestos bioactivos capaces de inhibir patógenos tipificados como multidrogo-resistentes tales como S. aureus meticilino resistentes y E. faecalis vancomicina resistentes.Objectives. To determine the antimicrobial potential of marine actinomycetes against drug-resistant pathogens represented by strains of methicillin-resistant Staphylococcus aureus (MRSA and vancomycin-resistant Enterococcus faecalis (VRE. Materials and

  6. Antimicrobial Activity and Stability of Fermentation Liquid from Actinomycete H50 Strain%放线菌H50发酵液抑菌活性及其稳定性测定

    Institute of Scientific and Technical Information of China (English)

    黄剑; 李天华; 崔艺久; 白洪志; 韩梅

    2012-01-01

    The strain of H50 was isolated from the soil in the lab.By identification, the strain was regarded as streptomyces. taking 12 epiphyte,3 bacteria as object, by means of mycelium growth rate and cup-plate method, the antimicrobial activity ot bioassay was studied. The stability of the fermentation broths in different conditions was measured. The antimicrobial tests showed that the inhibition rate of all the 12 strains were considerable and 6 of them reached 50%.It showed strongest inhibition efitvt against Bacillus subtills (12.3 mm).Organize method tests showed that inhibition rate of fermentation broths of the strain H50 to Sclerotinia sclerotiomm and Botrytis cinerea was 98.3% and 94.9% , respectively. Through the research of stability of the fermentation broths of actinomycete strain H50 to heat, acid, alkali and light we found that it had a stable activity to heat.acid and UV,but unstable to alkali.Antimierobial spectrum of actinomycete strain H50 was wide. Antimicrobial activity of the fermentation broths was stable and worth to be developed.%将沈阳农业大学微生物研究室分离的1株放线菌H50[链霉菌属(Streptomyces)]分别以植物病原菌真菌12株、细菌3株为供试菌,采用菌丝生长速率法和管碟法测定H50发酵液的抑菌活性以及发酵液的稳定性.发酵液的抑菌活性测定结果表明:H50发酵液对12株供试病原真菌均具有不同程度抑制作用,对其中6种病原真菌菌丝生长抑制率达50%以上,对油菜菌核病菌和黄瓜灰霉病菌的抑制率分别为98.3%和94.9%;H50发酵液对3种供试病原细菌中的枯草芽孢杆菌的抑制作用最强,抑菌圈直径为12.3mm.发酵液的稳定性检测结果表明:发酵液在80℃处理后抑菌活性开始下降,发酵液在pH值4.0~8.0条件下抑菌活性稳定,可见该菌株的代谢产物具有广谱抑菌活性和较强的热、酸、紫外光稳定性,具有潜在的开发价值.

  7. Screening, identification and optimization of fermentation conditions of an antagonistic actinomycetes strain to Setosphaeria turcica%玉米大斑病生防放线菌的筛选鉴定及发酵条件优化

    Institute of Scientific and Technical Information of China (English)

    赵淑莉; 任飞娥; 刘金亮; 秦建春; 潘洪玉

    2012-01-01

    [Objective ] To isolate and screen antagonistic actinomyces strains with inhibitory activity on Setosphaeria turcica from soil. [ Method] Actinomycetes were isolated by Pour Plate method. Antagonistic actinomycetes were screened by confrontation culture, cylinder plate, suppression of mycelial growth and spore germination method in vitro. Strain BZ45 were identified by morphological, cultural, physiological and biochemical characteristics and 16S rDNA sequence analysis. The fermentation condition was optimized by single factor and orthogonal experiment. [Result] Strain BZ45 showed antagonistic to 8 plant pathogens. Its filtrate inhibited the mycelial growth and spore germination of Setosphaeria turcica CC9. Strain BZ45 belonged to Streptomyces spectabilis. The optimum culture conditions of strain BZ45 were with a medium of 1. 5% fructose, 3.0% peptone, 0.1% KH2PO4, 0.04% NaCl, 0.1% CaCO3 at initial pH of 7. 2, liquid volume 50 mL in 250 mL flask, 200 rpm at 28^ , inoculation size of 10% for 4 d. [Conclusion] Strain BZ45 was identified as Streptomyces spectabilis and antagonistic against Setosphaeria turcica CC9.%[目的]从土壤中筛选对玉米大斑病菌具有较强拮抗作用的放线菌菌株.[方法]采用稀释涂布法分离;采用平板对峙法、牛津杯法、抑制菌丝生长速率法、抑制孢子萌发法进行拮抗菌的筛选;根据菌株BZ45的形态与培养特征、生理生化特性、16SrDNA序列分析对其进行鉴定.通过单因素试验和正交设计试验优化培养基组分及发酵条件.[结果]通过分离筛选得到一株具有强抑制作用的放线菌菌株BZ45,它对常见的8种病原真菌均有拮抗作用,菌株BZ45的发酵滤液对玉米大斑病菌(Setosphaeria turcica)CC9的菌丝生长和孢子萌发均有较强的抑制作用.菌株BZ45与链霉菌中的壮观链霉菌(Streptomyces spectabilis)的亲缘关系较近,且形态与培养特征、生理生化特性与壮观链霉菌的基本相符.研究表

  8. Alga-Lysing Activity of a Strain of Actinomycete to Microcystis aeruginosa.%一株放线菌对铜绿微囊藻的溶藻活性

    Institute of Scientific and Technical Information of China (English)

    余甜甜; 张炳火; 李汉全; 过七根; 李文均

    2011-01-01

    A strain of actinomycete JXJ 0071 was isolated from soil of the Lushan Mountain.Activities of its spores, mycelia and metabolites lysing Microcystis aeruginosa, stability of the active components of the activities and its taxonomic status were studied.Both spores and mycelia of actinomycete JXJ 0071 reduced the density of M.aeruginosa remarkably.Metabolites of the strain showed a very strong activity lysing M.aeruginosa, and 98% alga cells perished three days after addition of fermentation supernatant 2% in volume into the culture ( 1.0 × 107 mL-1 ) of M.aeruginosa.The alga-lysing active components were mainly water-soluble extracellular products, which remained quite stable regardless of exposure to high temperature, pH and ultraviolet radiation.The fermentation liquid stir showed a high alga-lysing rate, over 95% after being incubated under 60 ℃ for two hours, over 93.8% at pH 7 -9, and 85.7% after exposure to 254 nm ultraviolet radiation for 2 hours.Based on 16S rRNA sequences, strain JXJ 0071 was identified to be of the genus of Streptomyces,being as high as 99% similar to Streptomyces rectiviolaceus in 16S rRNA gene sequence.However, differences were found between JXJ 0071 and S.rectiviolaceus in physiological and biochemical properties.Further studies should be carried out to determine its exact taxonomic status at the species level.%从庐山土样中分离得到一株放线菌JXJ0071,研究了该菌的孢子、菌丝体和代谢产物对铜绿微囊藻(Microcystis aeruginosa)的溶藻活性以及溶藻活性成分的稳定性,并对其分类地位进行鉴定.结果表明,放线菌JXJ0071的孢子和菌丝体均能使铜绿微囊藻细胞密度显著降低.该菌代谢产物对铜绿微囊藻具有很强的溶藻活性,在藻密度为1.O×107mL-1的藻液中加入体积分数ψ为2%的该菌发酵上清液,3 d后溶藻效率达98%.溶藻活性成分主要来自水溶性胞外产物,其对高温、pH和紫外线处理

  9. Screening of endophytic actinomycetes from medical plants with producingα-amylase inhibitor%产α-淀粉酶抑制剂的药用植物内生放线菌的筛选

    Institute of Scientific and Technical Information of China (English)

    王顺; 高瑞昶

    2015-01-01

    α-淀粉酶抑制剂属于糖苷水解酶抑制剂中的一种,能有效地抑制肠道内唾液及胰淀粉酶的活性,阻碍食物中碳水化合物的水解和消化,减少糖分的摄取,降低血糖和血脂含量水平,使食后不产生高血糖症。本实验利用快速灵敏的比色法,对从几种药用植物体内分离得到的70株内生放线菌菌丝提取物和发酵液的α-淀粉酶抑制活性进行了检测,得出:具有产胞外α-淀粉酶抑制剂活性的菌株19株,抑制率达70%以上的有6株;产胞内α-淀粉酶抑制剂活性的菌株16株,其中抑制率达70%以上的有3株;既能产胞内α-淀粉酶抑制剂又能产胞外α-淀粉酶抑制剂的菌株7株。从菌株WS19发酵液中分离获得了α-淀粉酶抑制剂WSI19,对α-淀粉酶和α-麦芽糖酶均有显著抑制,且对麦芽糖酶的抑制性比同剂量的奥恬苹还强11.2倍。经小鼠糖耐量实验,证实 WSI19对餐后高血糖有明显改善。总体上看,药用植物内生放线菌具有很大的产α-淀粉酶抑制剂潜力,可进一步为开发糖尿病药物。%α-amylase inhibitor is a kind of glycosidase inhibitors. It can inhibit the activity of ptyalase and amylopsin,prevent the hydrolysis and digestion of carbohydrates,reduce the intake of sugar,so that depress postprandial blood glucose level. In this paper,theα-amylase inhibitory activity of the mycelium extracts and broth of 70 endophytic actinomycetes associated with medicinal plants was detected with rapid and sensitive colorimetry. The results showed that,there are 19 strains having the ability to produce extracellularα-amylase inhibitor,6 of them having more than 70% inhibion rate; there are 16 strains having the ability to produce intracellularα-amylase inhibitor,3 of them having more than 70% inhibion rate; there are 7 strains having the ability to produce both extracellular and intracellularα-amylase inhibitor. Theα-amylase inhibitor WSI19 was

  10. 柳珊瑚Anthogorgiacaerulea相关可培养共生放线菌多样性及其生物毒活性研究%Diversity and Biotoxicity of Culturable Actinomycetes Associated with the Gorgonian Anthogorgia caerulea

    Institute of Scientific and Technical Information of China (English)

    杨小梅; 李菲; 胡丽琴; 周文红; 覃媚; 高程海

    2014-01-01

    【目的】研究斜阳岛附近海域柳珊瑚Anthogorgiacaerulea可培养共生放线菌多样性及其发酵液代谢产物的生物毒活性。【方法】采用纯培养法和基于16 S rRNA基因序列的系统发育分析对从广西斜阳岛附近海域采集的柳珊瑚Anthogorgiacaerulea可培养共生放线菌多样性进行研究,利用卤虫致死法测试其生物毒活性。【结果】从柳珊瑚Anthogorgiacaerulea中分离获得相关可培养放线菌23株,采用16S rRNA基因序列的系统发育分析后发现,这些菌株属于2个亚纲9个科9个属23种。绝大部分菌株都具有一定的生物毒活性,其中10株菌株有较强生物毒活性,1株有显著毒活性。【结论】广西斜阳岛附近海域柳珊瑚Anthogorgia caerulea中存在较为丰富的放线菌多样性,部分菌株具有较强的生物毒活性。%[Objective]To investigate the diversity and biotoxicity of culturable actinomycetes isolated from GorgonianAnthogorgia caerulea collected at the Xieyang island.[Methods]Cul-tivated marine bacteria were isolated from Gorgonian Anthogorgia caerulea collected at the Xieyang island by using conventional culture-dependent method,and then investigate their di-versity by using phylogenetic analysis based on 16S rRNA gene sequence comparisons.Ac-tivities of the crude extract of strains isolated were tested through brine shrimp lethality.[Results]We isolated 23 bacterial strains from the sample in media(2216E,NA and ISP2 ) supplement with seawater.On the basis of morphological and biochemical characteristics,we selected 23 strains to perform a phyloenetic analysis based on 16S rRNA gene sequences. The results showed that there were 2 subclass,9 family,9 genus and 23 species.Activity results showed that the crude extract of 1 0 strains showed obvious brine shrimp lethality.[Conclu-sion]Gorgonian Anthogorgia caerulea collected at the Xieyang island showed high diversity of actinomycetes,and some of them showed obvi

  11. Optimization of medium components and culture conditions of algicidal actinomycetes BS01%高效溶藻放线茵BS01发酵培养基及发酵条件优化

    Institute of Scientific and Technical Information of China (English)

    傅丽君; 安新丽; 李东; 许丽霞; 田蕴; 郑天凌

    2011-01-01

    从漳江口红树林区采集的沉积物样品中分离到1株放线菌菌株BS01 Brevibacterium sp.,其胞外活性产物对塔玛亚历山大藻Alexandrium tamarense具有明显的溶藻作用.采用单因素及均匀设计,通过摇瓶培养对BS01产溶藻活性物质的发酵培养基及发酵条件进行优化.结果表明,在可溶性淀粉为碳源、硝酸钠为氮源、装液量为40%、起始pH值为7.5、培养温度为28℃、转速为150r·min-1、振荡培养时间为48h的条件时,BS01发酵产物的杀藻活性最强.通过均匀设计进行最佳发酵培养基及培养条件优化的结果为:可溶性淀粉为20g·L-1,硝酸钠为0.5g·L-1,pH为7.7,温度为27.2℃.研究结果为杀藻活性物质高效提取及杀藻机制研究奠定了基础.%A strain of actinomycetes BS01 capable of lysing the toxic dinoflagellate Alexandrium tamarense was isolated from mangrove area of Zhangjiangkou in Fujian province. The medium components and cultural conditions for algicidal activity of actinomycete strain BS01 were optimized by single-factor and uniform tests in shake-flask. The initial pH, fermentation temperature, fermentation time, and inoculum were optimized through single-factor tests. Results showed that BS01 exhibited the best algicidal activity by using soluble starch as carbon source, sodium nitrate as nitrogen source, initial pH at 7.7, temperature at 27.2℃, and shaking at 150r.min-1 in 100mL of 250mL conical flask for 48h. The optimal fermentation parameters of BS01 were: soluble starch 20g·L-1, sodium nitrate 0.5g.L-1, pH value 7.7, and temperature 27.2℃by using uniform design experiments.

  12. Screening of Anti-tumour Actinomycete Using Conidia of Pyricularia Oryzae%利用稻瘟霉分生孢子筛选抗肿瘤放线菌

    Institute of Scientific and Technical Information of China (English)

    张炳火; 李汉全; 余甜甜; 过七根; 张良慧; 李文均

    2012-01-01

    利用稻瘟霉分生孢子萌发时菌丝形变为指示,从150余株放线菌中筛选到一株抗肿瘤活性很强的菌株JXJ-0108,并从其发酵液中纯化到一个抗肿瘤活性较强的化合物JXJ-0108-1,该化合物在治疗胃癌和肝癌的药物研制中具有潜在的价值.四氮唑盐酶还原法(MTT)体外研究表明,JXJ-0108-1对人肝癌细胞BEL-7402和人胃癌细胞BGC-823的IC50分别为1.63和0.95 ug/mL;流式细胞仪分析表明,分别从0.50和0.30 ug/mL的化合物作用浓度开始,与空白对照组相比,肝癌细胞BEL-7402和胃癌细胞BGC-823的G0/G1、S和G2/M期细胞比例有极显著差异,其中G0/G1和S期细胞比例降低,G2/M期细胞比例上升.本文为抗肿瘤放线菌的筛选及活性成分的跟踪分离提供了一个快速简便的有效方法.%An anti-tumour strain JXJ-0108 was screened out from 150 actinomycetes strains by detecting deformation of mycelia of Pyricularia Oryzae,and compound JXJ-0108-1 .which showed strong anti-tumour activity and taked on potential value in the development of anti-gastric cancer and hepatoma drugs,was purified from the fermentation liquid. The antitumor activity of the compound was examined by MTT( Microculture Tetrozolium) method in vitro,and the IC50, values on human hepatic carcinoma cells BEL-7402 and gastric carcinoma cells BGC-823 were 1.63 and 0.95 ug/mL, respectively. Compared with the control groups,the proportions of hepatic carcinoma cells BEL-7402 and gastric carcinoma cells BGC-823 in G0/G1 ,S and G2/M phases presented very notable difference after treated with the compound from the concentrations of 0.50 and 0. 30 ug/mL,respectively. As the results,the proportions of cells in G0/G1 and S phases were reduced,while the proportion of cells in G2/M phase was increased. This paper provides a quick and convenient method to screen anti-tumour actinomycetes and track the active compounds during the purification efficaciously.

  13. Actinomycetes Strains Screening for Xanthan- degrading and Study on Ferment Conditions for Enzyme Producing%产黄原胶降解酶放线菌筛选及发酵工艺研究

    Institute of Scientific and Technical Information of China (English)

    古丽·艾合买提; 穆斯塔帕·克地尔; 唐娴

    2011-01-01

    [Objective] Xanthan is a kind of extracellular polysaccharose (EPS) produced by a plant pathogen of Xanthomonas campestris . It has a main chain structure similar to cellulose and is difficult to degrade, and can be -widely used for thickening agent, suspending agent, emulsifying agent and stabilizing agent as biogel with its special physical properties. However, it can also cause black rotten disease for crucifer. The purpose of this program is to obtain oligosaccharide produced by biodegradation of xanthan which used for biochemical to control black rotten disease by screening actinomycetes strains for xanthan - degrading. [ Method ] The program was carried out by screening actinomycetes strains from natural soil based on xanthan - degrading ability, identifying by 16S rRNA analysis, selecting mutants by ultraviolet mutation for higher enzyme activity, and studying on ferment conditions for enzyme producing by one factor and orthogonal tests. [Result]A strain of Streptomyces sp has been obtained, and the xanthan - degrading enzyme activity of its fermentation liquid reached 200 IU/L after culture medium and ferment conditions optimization.%[目的]黄原胶是植物致病菌野油菜黄单胞菌所分泌的胞外多糖,其主链类似纤维素很难降解,可作为生物胶用于增稠剂、悬浮剂、乳化剂和稳定剂,还能引起十字花科植物黑腐病.筛选分离对黄原胶有显著降解作用的放线菌,以生物方法降解黄原胶,降解产物黄原胶寡糖可有效防治黑腐病,具有开发为生物农药的潜力.[方法]从自然土壤样品中进行分离筛选、纯化、16S rRNA鉴定及诱变选育,获得高效降解黄原胶放线菌菌株,通过发酵工艺研究,确定最适产酶条件.[结果]优化产酶培养基配方为:蔗糖3%,( NH4 )2SO4 0.5%,KNO31%,酵母膏0.1%.菌株发酵产酶培养条件为:发酵温度28℃,pH7.5,500mL瓶装量为150 mL,底物浓度0.5%,接种量为5%.[结论]获得一株高效

  14. Screening and Identification of Actinomycetes Antagonistic to Fusarium oxysporum and Phomopsis asparagi%香蕉枯萎病菌和芦笋茎枯病菌的拮抗放线菌筛选与鉴定

    Institute of Scientific and Technical Information of China (English)

    杜宜新; 石妞妞; 阮宏椿; 甘林; 杨秀娟; 陈福如

    2013-01-01

    从江西井冈山地区采集的土壤样品中分离获得76株放线菌,通过对峙培养法筛选出菌株S15对香蕉枯萎病菌 Fusarium oxysporum、芦笋茎枯病菌 Phomopsis asparagi 有强抑制作用,该菌培养滤液对稻瘟病菌Magnaporthe oryzae、番茄灰霉病菌 Botrytis cinerea、大豆炭疽病菌 Colletotrichum truncatum、水稻纹枯病菌Rhizoctonia solani、柑橘炭疽病菌Colletotrichum gloeosporioides、香蕉黑星病菌Cladosporium cucumerinum、番茄早疫病菌 A lternaria solani、黄瓜炭疽病菌 Colletotrichum orbiculare、玉米大斑病菌 Setosphaeria turcica等多种重要的植物病原真菌也均有较强的抑制作用,拮抗谱较宽。根据其形态特征、培养特性、生理生化特性和16S rDNA序列同源性分析,S15被鉴定为链霉菌属波卓链霉菌 Streptomyces bottropensis。%Seventy-six strains of actinomycete were isolated from the soil in Jinggangshan area in Jiangxi province . S15 was found to be strongly antagonistic to Fusarium oxysporum and Phomopsis asparagi .The inhibition effect of S15fermentationfiltratewassignificantagainst Magnaportheoryzae,Botrytiscinerea,Colletotrichumtruncatum, Rhizoctonia solani , Colletotrichum gloeosporioides , Cladosporium cucumerinum , A lternaria solani , Colletotrichum orbiculare and Setosphaeria turcica . According to its morphology , cultural characteristics , physiological and biochemical characteristics and 16S rDNA sequence ,S15 were identified to be Streptomyces bottropensis .

  15. Growth Promotion and Disease Control Effect Determination of Endophytic Actinomycetes from Medicago sativa%首蓿内生拮抗放线菌的促生防病作用研究

    Institute of Scientific and Technical Information of China (English)

    王燕; 张绒仙

    2011-01-01

    [ Objective ] The research aimed to screen antagonistic endophytic actinomycetes from Medicago sativa. [ Method ] Growth promotion and disease control effect determination has been done by using Mx1, Mx3 and Mx5, which wcre isolated from the healthy Medicago sativa[ Result ] The result that the comparative control of Mx3 extracts could be 56.56%, 44.67% to Botrytis cinerea and Gaeumannomyces graminis var.tritici, respectively; the control effect of Mx3 extract was higher than it' s suspension. Mx3 extract had good effect on plant height and leaf quantity of tomato growing in the greenhouse; its growth-promoting abihty on wheat and cucumber was higher than water control. [ Conclusion ] Mx3 could promote growth of root, bud on both tomato and wheat, but it could restrain the growth of cucumber root.%[目的]从首蓿内生放线菌中筛选拮抗菌株.[方法]采用已从健康首蓿组织中分离得到的内生放线菌Mx1、Mx3、Mx5进行温室促生防病测定.[结果]菌株Mx3的发酵液对番茄灰霉病的防效可达56.56%,对小麦全蚀病的防效为44.67%;发酵液对2种病害的防效都明显高于菌悬液.对温室番茄株高、叶片数生长影响最明显;对小麦、黄瓜的促生均高于对照.[结论]菌株Mx3促生效果最好,其发酵液的防病效果明显优于菌悬液.

  16. Isolation & Identification of an Actinomycetes Strain and Analysis of Its Metabolites%一株放线菌的分离鉴定及其代谢产物研究

    Institute of Scientific and Technical Information of China (English)

    杨帆; 陈良强; 林琳; 王和玉; 王莉

    2014-01-01

    利用高氏平板从酱香型白酒生产环境土壤中筛选分离得到1株放线菌NS01,利用形态学、16S rRNA序列同源性鉴定目的菌株为链霉菌属(Streptomyces sp.)。分别采用液态与固态培养基培养目的菌种,通过顶空固相微萃取技术进行萃取,再利用气相色谱质谱联用仪分析代谢产物,结果发现该菌代谢大量的萜烯类物质。代谢产物中的倍半萜烯类物质:2-甲基异莰醇、土臭素具有土臭味和霉味,该类物质可能与酱香型白酒酿造过程中出现霉味有关。%An actinomycetes strain NS01 was isolated from the soil in the production environment of Maotai by use of Gause's culture plate. And it was identified as Streptomyces sp. by 16S rRNA gene sequence analysis and morphological analysis. After the culture of strain NS01 by liquid culture medium and by solid culture medium respectively, its metabolites were extracted by HS-SPME and then analyzed by GC-MS. It was found that its metabolites contained a large number of terpenes. 2-methylisoborneol and geosmin in the sesquiterpenes in the metabolites might be relat ed to the musty-odor of base liquor.

  17. Isolation and environmental adaptation of endophytic Actinomycetes in Acanthus ilicifolius of different mangrove%不同红树林地区老鼠簕内生放线菌的分离及其环境适应性

    Institute of Scientific and Technical Information of China (English)

    唐依莉; 王蓉; 洪葵

    2012-01-01

    [Objective] To investigate geographical distribution of Acanthus ilicifolius endo-phytic actinoniycetes of different mangrove regions, and their environmental adaptation. [Methods] Endophytic actinomycete strains were isolated from different part of Acanthus ilicifolius plant collected from 5 mangrove sites using 9 different selective isolation media. Isolates were idelrtificated to genus level using 16S rRNA gene sequence analysis. NaCl tolerance was tested using ISP 2 liquid medium supplement with different NaCl concentrations. Potential of nitrogen-fixation isolates were surveyed using nitrogen-free medium. [Results] A total of 52 endophytic actinomycete strains were successfully isolated from Acanthus ilicifolius plant, among which 5 isolates were from surface- sterilized leaves, 2 isolates from stems and the remaining 45 isolates were from roots. Analysis of 16S rRNA gene sequences of these isolates showed that they belonged to members of the genera Jishengella (1 isolate), Micromonospora (47 isolates), Streptomycetes (3 isolates) and Verrucosispora (1 isolate). Forty eight isolates were halo-tolerant or halophilic, including 18 isolates exhibited highest tolerance come up to 20% NaCl, 4 isolates can't grow in salt-free medium, and 12 isolates exhibited good growth in presence of 3.3% NaCl. Meanwhile, 4 strains can grow on nitrogen-free medium that showed potential of nitrogen-fixation. [Conclusion] Analysis of 47 Micromonospora isolates from 5 mangrove locations indicated that there were different endophytic Micromonospora groups of Acanthus ilicifolius among different geographical sites. The results obtained revealed the environmental adaptation of the Acanthus ilicifolius endophytic actinomycetes.%[目的] 比较不同红树林地区的老鼠簕内生放线菌的地理分布,了解内生放线菌与其所处环境的相关性.[方法] 分别从5个不同地点的红树林采集老鼠簕全株植物,采用9种分离培养基,从植株不同

  18. Response of Microbe Quantity and Actinomycetes Community of Heavy Metal Contaminated Soils in Leadzinc Mine%铅锌矿区重金属污染对微生物数量及放线菌群落结构的影响

    Institute of Scientific and Technical Information of China (English)

    李小林; 颜森; 张小平; 韦成健

    2011-01-01

    采集四川省汉源县富泉乡万顺铅锌矿区5个不同重金属浓度的土壤样品,进行了微生物数量及放线菌多样性的研究.经分离、纯化得到43株不同的放线菌,然后对其进行BOXAIR-PCR和16S rDNA PCR-RFLP分析.结果表明,铅锌矿区重金属复合污染对土壤微生物数量有较大的影响,随着铅锌矿区重金属污染程度的加剧,土壤微牛物的总数下降.相关性分析表明,重金属含量与细菌数量呈极显著负相关(P<0.01),与放线菌数量、真菌数量呈显著负相关(P<0.05).供试菌株的16S rDNA用Hae Ⅲ、Hinf Ⅰ和Taq Ⅰ酶切后具有32种遗传图谱类型.BOXAIR-PCR的聚类结果表明在86%的水平上,所有菌株分为10个遗传类型,结果基本与16S rDNA PCR-RFLP聚类差异不大.来源于高重金属的含量样品的菌株基本聚在一起,可能是重金属含量影响了放线菌的分布.同时,16S rDNA序列聚类分析结合系统发育树分析表明链霉菌属是汉源铅锌矿区主要的放线菌属并且具有遗传多样性.%To understand the influence of the heavy metal pollution on actinomycetes, the microbe quantity of soils, diversity and dominant microbial groups of actinomycetes were tested.Forty-three strains of actinomycetes in the lead-zinc mine soils were isolated from Fuquan town, Hanyuan country, Sichuan Province.The genetic diversity was evaluated by BOXAIR and 16S rDNA PCR-RFLP.The results indicated that heavy metals pollution had a significant impact on the number of soil microbes in lead-zinc district.With the intensification of heavy metal pollution levels, the total number of soil microorganisms declined.There was a very significant negative correlation between the number of bacteria and heavy metal content(P<0.01 ), whereas significant negative correlation for the numher of fungi and actinomycetes(P<0.05 ).The strains used in numerical taxonomy were analyzed by 16S rDNA PCR-RFLP with three kinds of restriction eadonucleases

  19. Inductive effects of fungal pathogens of American Ginseng and Ginseng on chitinase and cellulase of antigonistic actinomycetes%西洋参和人参病原真菌菌体对放线菌2种水解酶的诱导

    Institute of Scientific and Technical Information of China (English)

    于妍华; 薛泉宏; 唐明

    2011-01-01

    【目的】研究特定拮抗放线菌对西洋参人参土传病害病原真菌的接触抗菌机理。【方法】以5株西洋参、人参土传病害病原真菌菌体为惟一碳源,用液体培养及3,5二硝基水杨酸(DNS)法研究5株供试病原真菌对9株拮抗放线菌几丁质酶和纤维素酶合成的诱导作用;采用搭片法,观察9株拮抗放线菌与5株供试病原真菌菌丝间的相互作用。【结果】①以5株病原真菌菌体为惟一碳源时,可诱导9株拮抗放线菌合成几丁质酶和纤维素酶;9株放线菌的几丁质酶和纤维素酶活性分别为7.17~11.58和6.14~21.20 U,其中西洋参恶疫霉菌体对9株放线%【Objective】 Inhibitory mechanism of antigonistic actimomycetes fighting against fungal pathogens of soil-borne disease in American Ginseng and Ginseng was studied.【Method】 The inductiveness was assessed by the activity of chitinase and cellulase,which were induced from 9 strains of antigonistic actinomycete by using 5 dried strains of fungal pathogens of American Ginseng and Ginseng as C-source in liquid culture medium and DNS measurement,and the mutual effects were observed between antigonistic actinomycetes and fungal pathogens of American Ginseng and Ginseng through the method of building pieces on plate.【Result】 ①The activity of chitinase and cellulase,which was mainly distributed among 7.17-11.58 and 6.14-21.20 U,respectively,differed from 9 strains of antigonistic antinomycete induced from 5 strains of fungal pathogen of American Ginseng and Ginseng.The powder of Phytophthora cactorum could induce antigonistic actinomycetes to produce much more chitinase and cellulase.②The mutural effects between mycelia of Act11,Act13,Act24 and Cylindrocarpon destructans,Cylindrocarpon sp.,such as winding and decomposition,were observed distinctively.【Conclusion】 The mycelia of 5 strains of fungal pathogen of American Ginseng and Ginseng could induce 9 strains of antigonistic actinomycete

  20. Preliminary Study on Antibiotic Activity of the Extract From Antarctic Actinomycete NJ-F2%南极放线菌NJ-F2萃取物的抗菌活性初步研究

    Institute of Scientific and Technical Information of China (English)

    李江; 林学政; 沈继红; 王能飞; 李光友

    2009-01-01

    Actinomycete NJ-F2 is isolated from the sea-mud sampled during the 24th Antarctic Scientific Expedition of China . The bacteriostatic activity of the extract with acetic ether from the fermented NJ-F2 is detected in the in-vitro experiment and the 16S rDNA method is employed to analyze the NJ-F2 phylogenesis. As it is shown from the experimental results,the minimum inhibitory concentration (MIC) and the minimum bactericidal concentration (MBC) against both Staphylococcus aureus and Bacillus subtilis are 0. 25 mg/mL and 5. 0 mg/mL respectively,and MIC and MBC against both Eschericidal coil and Aerobac-tor aerogenes are 0. 5 mg/mL and 5. 0 mg/mL respectively. No antibacterial activity can be found against fungi. It is learnt from the 16S rDNA analysis that NJ-F2 is of Streptomyces sp.%从南极第24次科学考察采集的海泥样品中分离获得放线菌NJ-F2,对NJ-F2发酵液的乙酸乙酯萃取物进行体外抗菌实验,并采用16S rDNA方法对NJ-F2进行系统发育分析.结果表明萃取物对金黄色葡萄球菌和枯草芽孢杆菌的最低抑菌浓度(MIC)、最低杀菌浓度(MBC)分别为0.25 mg/mL,5.0 mg/mL;而对大肠杆菌和产气杆菌的MIC、MBC分别为0.5 mg/mL,5.0 mg/mL,但对真菌没有抗菌作用;16SrDNA分析结果表明NJ-F2为链霉菌属(Streptomyces sp.).

  1. Identification of an Actinomycete Antagonistic Against Cylindrocarpon destructans and Its Optimized Fermentation Conditions%人参锈腐病拮抗放线茵的鉴定及发酵条件

    Institute of Scientific and Technical Information of China (English)

    姜云; 陈长卿; 王琳; 马贵龙

    2011-01-01

    An actinomycete strain 1a-3 antagonistic against Cylindrocarpon destructans was isolated from the soil in ginseng fields. It was identified as Streptomyces griseochromogenes according to the morphological characteristics, cultural characteristics, physiological and biochemical properties, cell wall components and 16S rDNA sequences analysis. Single factor experiment and multiple factor experiment showed that the culture medium which contained 1 g/L glucose, 3 g/L com flour, 2 g/L soybean flour, 0.3 g/L yeast flour, 0. 1 g/L KH,PO4, 0. 3 g/L CaCO, and 0. 1 g/L NaCl was the best for fermentation. The optimal fermentation condition was obtained as initial pH 7.0, fermentation temperature 28 degrees C, and fermentation time 60 h.%从人参田土壤中筛选到1株对人参锈腐病菌(Cylindrocarpon destructans)有较强拮抗作用的菌株1a-3,通过形态特征、培养特性、生理生化特性、细胞壁组分分析和16S rDNA同源性序列分析,确定该菌株为链霉菌属灰产色链霉菌(Streptomyces griseochromogenes).经单因子和各因子正交试验,确定的最适发酵培养基配方为,葡萄糖1 g/L、玉米粉3g/L、大豆粉2g/L、酵母粉0.3 g/L、KH2PO40.1 g/L、CaCO30.3g/L、NaCl 0.1 g/L;最适培养条件为起始pH值7.0、28℃摇瓶培养60h.

  2. Characterization of Purple Pigment Produced by Sponge Associated Actinomycete Strain Transformed by Ribosome Engineering%核糖体工程改造海绵共附生放线菌紫色素的特性

    Institute of Scientific and Technical Information of China (English)

    周丹燕; 王广华; 戴世鲲; 陈文; 李翔

    2013-01-01

    从西沙海域未鉴定海绵样品中分离到一株命名为SCKA-96.5的放线菌菌株,该菌在海水高氏Ⅰ号培养基上产生灰白色气生菌丝.16 S rDNA序列分析表明,该菌为链霉菌属放线菌.通过核糖体工程技术获得其变异菌株SCKA-96.5K,该变异株在海水高氏Ⅰ号培养基上能稳定地产生可溶性紫色素.对SC-KA-96.5K所产的紫色素进行粗提取及稳定性分析,了解相关理化因素对其稳定性的影响.初步研究结果表明,在波长600 nm处该紫色素具有最大吸光度;热稳定性较好;颜色随pH的变化明显;强氧化剂次氯酸钠对其破坏较大,在弱还原剂中比较稳定;葡萄糖等食品添加剂对其基本没有影响.作为一种潜在的天然色素资源,该紫色素具有一定的工业开发价值.%An actinomycete strain SCKA-96.5 was isolated from an unidentified sponge sample from Xisha sea.The strain produced grayish-white aerial mycelium on Guase's No.Ⅰ medium supplemented with seawater.The 16 S rRNA gene sequence of strain SCKA-96.5 showed that it was assigned to Streptomyces.Its mutant strain,SCKA-96.SK,obtained by ribosome engineering,was able to produce a purple diffusible pigment stably.The pigment was extracted; and its physicochemical properties were analyzed.The results showed that the maximum absorption wavelength was 600 nm; the pigment was stable to heat and food additives; its color changed significantly when pH changed; strong oxidant NaClO could destroy the pigment while weak reductants didn't had any effect on the pigment.The purple pigment had the potential to be developed for future application as a kind of natural pigment.

  3. 番茄灰霉病菌拮抗放线菌的筛选、鉴定及其活性评价%Screening,Identification and Inhibitory Activity of an Actinomycete Strain and against Botrytis cinerea

    Institute of Scientific and Technical Information of China (English)

    徐大勇; 李志栋; 李峰; 徐顶泉; 吴旺丽

    2012-01-01

    从安徽省寿县农田土壤中分离筛选到1株对番茄灰霉病菌Botrytis cinerea有强拮抗作用的放线菌菌株HNU-1。根据菌体形态特征、培养特征、细胞壁组分、生理生化特性和16S rRNA基因序列分析,将该菌株鉴定为吸水链霉菌Streptomyces hygroscopicus。菌株HNU-1发酵滤液可抑制灰霉病菌菌丝生长和分生孢子萌发,且浓度越高,抑制能力越强;当发酵滤液稀释6.67倍时则完全抑制灰霉病菌菌丝生长和分生孢子萌发。盆栽试验结果表明,菌株HNU-1发酵滤液6.67倍稀释液对番茄灰霉病的预防与治疗效果分别为87.8%和77.9%,均显著高于50%多菌灵可湿性粉剂500倍稀释液。%An actinomycete strain HNU-1,isolated from a farmland soil in Shou county,Anhui province,exhibited antifungal activity against Botrytis cinerea.Based on characteristics,in morphology,physiological,biochemica and 16S rRNA gene sequences,the strain was identified as Streptomyces hygroscopicus.Culture filtrate of the strain could inhibit mycelium growth and spore germination of B.cinerea,and resulted in more inhibition as the concentration of the culture filtrate increased.Mycelium growth and spore germination of B.cinerea was completely inhibited by 6.67-fold dilution of the culture filtrate.Pot experiments demonstrated that prevention and cure efficiencies of 6.67-fold dilution of the culture filtrate against tomato gray mould were 87.8% and 77.9%,respectively,significantly superior to those of 500-fold dilution of 50% Badistan.

  4. 放线菌制剂对人参生长及根域土壤微生物区系的影响%Effects of actinomycetes agent on ginseng growth and rhizosphere soil microflora

    Institute of Scientific and Technical Information of China (English)

    张鸿雁; 薛泉宏; 申光辉; 王东胜

    2013-01-01

    Taking the ginseng in Xiao Xing' an Mountains of Northeast China as test object,this paper studied the effects of applying Streptomyces pactum (Act12) on ginseng growth and on the soil microflora in root zone and root surface.After treated with Act12,the yield and quality of ginseng' s medicinal part improved,the induced enzyme activities in leaves and the root activity increased,and the numbers and proportions of soil bacteria and actinomycetes increased significantly while those of soil fungi decreased.Compared with the control,the soil microflora in treatment Act12 changed.The numbers of the dominant bacteria Pseudomonas fluorescens,Pseudomonas koreensis,and Microbacterium oxydans were much higher in root zone soil and root surface soil,and the pathogen Plectosphaerella cucumerina decreased in root zone soil and disappeared in root surface soil.These results suggested that the addition of Act12 could improve the soil microflora,enhance the resistance and root activity of ginseng plant,and increase the ginseng yield and its quality.%以小兴安岭地区人参为研究对象,探索放线菌制剂对人参的促生效应及对人参根区、根表土壤微生物区系的影响.结果表明:经放线菌制剂Streptomyces pactum(Act12)处理后,人参药用部分产量增加,品质改善;叶片诱导酶活性提高,根系活力增强;土壤中细菌、放线菌的数量和比例显著增加,真菌的数量和比例减少.与对照相比,土壤微生物区系结构改变:优势菌荧光假单胞菌、韩国假单胞菌和氧化微杆菌在根区、根表土壤中的数量大幅提高;病原真菌烟色织孢霉在根区土壤中减少,在根表土壤中消失.表明施用放线菌制剂Act12能够改善土壤微生物区系,提高人参植株的抗性和根系活力,增加产量并改善品质.

  5. Cyclic dipeptides in actinomycete Brevibacterium sp.associated with sea cucumber Apostichopus japonicus Selenka: isolation and identification%仿刺参共附生放线菌Brevibacterium sp.中的环二肽成分的分离和鉴定

    Institute of Scientific and Technical Information of China (English)

    宫俊; 汤华; 耿婉丽; 刘宝姝; 孙鹏; 李玲; 李志勇; 张文

    2012-01-01

    Objective To investigate the secondary metabolites of actinomycete Brevibacterium sp. associated with the sea cucumber Apostichopus japonicus Selenka. Methods The ethyl acetate extract of the actinomycete was purified by repeated column chromatography on silica gel, Sephadex LH-20, and high-performance liquid chromatography (HPLC) to obtain pure compounds; and the compound structures were elucidated by spectroscopic analysis (nuclear magnetic resonance, NMR; mass spectrometry, MS) and the results were compared with the previously reported data. Results Seven compounds were isolated: cyclo-(L-Pro-L-Phe) (1), cyclo-(L-Pro-L-Met) (2), cyclo-(L-Pro-L-Tyr) (3), cyclo-(L-Pro-L-Val) (4), cyclo-(L-Pro-L-Pro) (5), cyclo-(L-Val-Gly) (6), and cyclo-(L-Pro-L-Leu) (7). Conclusion This is the first report on the secondary metabolites of microorganisms associated with the sea cucumber Apostichopus japonicus Selenka, and all the seven compounds have been reported from the actinomycete Brevibacterium sp. for the first time.%目的 对仿刺参共附生放线菌Brevibacterium sp.的次生代谢产物进行研究.方法 运用硅胶柱色谱、Sephadex LH-20凝胶柱色谱、高效液相色谱(HPLC)等现代色谱技术对放线菌的乙酸乙酯提取物进行分离纯化,在核磁共振(NMR)、质谱(MS)等现代波谱技术及与文献比对的基础上对其结构进行鉴定.结果 共分离得到7个环二肽类化合物,分别鉴定为:环-(L-脯氨酸-L-苯丙氨酸)(1)、环-(L-脯氨酸-L-甲硫氨酸)(2)、环-(L-脯氨酸-L-酪氨酸)(3)、环-(L-脯氨酸-L-缬氨酸)(4)、环-(L-脯氨酸-L-脯氨酸)(5)、环(L-缬氨酸-甘氨酸)(6)、环-(L-脯氨酸-L-亮氨酸)(7).结论 本研究是对仿刺参共附生微生物次生代谢产物研究的首次报道,这7个化合物均为首次从放线菌Brevibacterium sp.中分离得到.

  6. Screening and Characterization of Anti-Root-Knot Nematode Actinomycetes Strain from Mud under Mangrove(Rhizophora)Forest%1株抗根结线虫红树林放线菌的筛选与鉴定

    Institute of Scientific and Technical Information of China (English)

    魏华; 刘敏; 鲍时翔; 朱军; 黄惠琴

    2012-01-01

    从红树林底泥中分离筛选具有抗线虫活性的放线菌,并对活性菌株进行分类鉴定.采用稀释平板法分离放线菌,采用24孔板液体筛选模型筛选具有抗线虫活性的菌株,并对活性菌株进行形态学和生理生化特征研究,测定其16S rDNA序列并进行系统发育分析.筛选得到1株具有杀线虫活性的菌株,编号为HA11090,该菌株发酵液在稀释20倍和40倍后,抗根结线虫校正死亡率分别为70.5%和65.0%.菌株HA11090的16S rDNA序列与Saccharopolyspora hirsuta subsp.kobensis和Saccharopolyspora jiangxiensis的相似性最高,分别为99.35%和99.27%,三者在系统发育树上聚为一个分支,形态和生理生化特征分析显示,菌株HA11090与Saccharopolyspora jiangxiensis基本一致,而与S.hirsuta subsp.kobensis差异较大.鉴定菌株HA11090为Saccharopolyspora jiangxiensis,其发酵液具有较强的抗根结线虫活性,值得进一步研究.%An actinomycetes strain with anti-nematode activity was isolated from mud beneath mangrove (Rhizophora) forest and carried out its taxonomic classification. The strain was isolated with dilution-plate method and screened the strain with anti-nematode activities adopted 24-stomous plate fluid model. The active strain was studied by its morphological and physiological and biochemical characteristics and phylogenetic analysis with 16S rDNA sequencing. The results showed that a strain possessing nematode killing activity was screened and numbered as HA11090, and mortality rates of the fermentation of strain against root knot nematode were 70.5% and 65% on 20 times dilution and 40 times dilution. The highest 16S rDNA sequence similarity with Saccharopolyspora hirsuta subsp. Kobensis was 99. 35% , and S. Jiangxiensis 99.27%. The phylogenetic tree showed that strain HA11090 formed a cluster in the branch with 5. Hirsula subsp. Kobensis and 5. Jiangxiensis. The characteristics of morphology and physiology of strain HA11090 basically

  7. 艾叶内生放线菌的分离、系统发育及相关特性研究%Isolation, phylogenetic analysis and relative characteristics of endophytic actinomycete isolated from Artemisiae argyi

    Institute of Scientific and Technical Information of China (English)

    张秀敏; 张利平; 李景晨

    2011-01-01

    从艾叶药用植物中共分离得到19株内生放线菌,对这些菌株分泌胞外淀粉酶、蛋白酶、脂肪酶和纤维素酶特性以及拮抗农作物病原菌和人类病原菌活性进行了研究,并对部分活性菌株进行了16S rDNA系统发育分析.结果表明:在这19株内生放线菌中,具有产胞外淀粉酶活性的菌株11株,产蛋白酶活性的菌株11株,产纤维素酶活性的菌株8株;拮抗活性试验显示,有2株菌对禾谷镰刀菌(Fusarium graminearum Schw.)、水稻胡麻斑病菌[Bipolaris oryzae(Breda deHaan)Shoem]和肠球菌(Enterococcus sp.)具有拮抗活性,3株菌对耐青霉素类金黄色葡萄球菌(Sta ph yloccocus aureus)具有拮抗活性.对其中的3株菌进行了16S rDNA系统发育分析,该3株菌均属于糖霉菌属,菌株IF11、IXS和IF22均同时与Glycomyces mayteni YIM61331T、Glycom yces sambucus E71T、Glycomyces scopariae YIM56256T亲缘关系最近,序列相似性分别为98.3%、98.3%和98.1%.%Nineteen strains of endophytic actinomycetes were isolated from Artemisiae argyi. The feature of excreting enzyme and the antagonistic activity against pathogenic fungi of crops and pathogenic bacteria of human about these strains was studied. 16S rDNA phylogenetic a- nalysis of some activated strains was carried out. The result showed that the number of strains which could produce amylase, protease and cellulase was 11, 11, 8, respectively. Antagonistic ability tests showed two strains have activity against Fusarium graminearum Schw, and Bipolaris oryzae (Breda deHaan) Shoem, Enterococcus sp. And three strains have activity against Staphyloccocus aureus of penicillin tolerance. Three activated strains were selected to carry out phylogenetic analysis, and the result based on 16S rDNA sequences about these three activated strains indicated that they belonged to Glycomyces. The strain IF11, IXS and IF22 were all similar to Glycomyces mayteni YIM61331T, Glycomyces sambucus E71T, Glycomyces

  8. Efecto Antagónico in vitro de Actinomicetos Aislados de Purines de Chipaca (Bidens pilosa L. Frente a Phytophthora infestans (Mont de Bary In vitro Antagonistic Effect of Actinomycetes Isolated from Chipaca (Bidens pilosa L. Purins Against Phytophthora infestans (Mont de Bary

    Directory of Open Access Journals (Sweden)

    Yudy Astrid Fonseca Ardila

    2011-12-01

    Full Text Available Se estudió el efecto inhibidor de los actinomicetos presentes en purines o extractos fermentados de plantas de chipaca (Bidens pilosa L., sobre el crecimiento de Phytophthora infestans (Mont de Bary, causante del tizón tardío de la papa. Se elaboraron cuatro purines de flores, raíces, hojas-tallos y su mezcla. De estos purines se obtuvieron 25 aislamientos de actinomicetos, cada uno de los cuales se enfrentó con P. infestans en placas de medio de cultivo, utilizando la técnica de anillos de Gauze y estableciendo las concentraciones iniciales de esporas mediante conteos microscópicos en cámara de Neubauer. Los actinomicetos no crecieron en el purin de flores debido, posiblemente, a que en él no se utiliza suelo rizosférico o porque su pH (9 es mayor que el rango normal de crecimiento de estos microorganismos ( pH 6 -; 8. Se evidenció inhibición del crecimiento del oomycete por parte de 8 aislamientos de actinomicetos con porcentajes de inhibición entre 33,3 - 77,8%, provenientes de los purines de raíces, tallos-hojas y mezcla de partes de la planta. La mayor inhibición se obtuvo en los aislamientos AC001, AC010, AC011 y AC025 con conteos de 0,4, 6,0, 3,0, y 3,6 x10(5 esporas mL-1.Purins or liquid fermented extracts of chipaca (Bidens pilosa L. were prepared to establish the inhibitory effect of the actinomycetes found in such biopharmaceutical preparations on the growth of Phytophthora infestans (Mont de Bary, the causative of potato late blight disease. Four purins made from flowers, roots, leaf-steams and a mixture of them were prepared; 25 actinomycete isolates were obtained from these purins and their ability to resist challenge by P. infestans was ascertained in medium plates using the ring Gauze technique and establishing initial concentrations of spores by microscopic counting in Neubauer chamber. Actinomycetes did not grow in flower purin as rhizosphere soil was not used in its preparation or because this particular pH (9

  9. Intra- and interspecific polymorphisms ofLeishmania donovani andL. tropica minicircle DNA

    OpenAIRE

    Dobner, P; Löscher, Thomas; Rinder, H

    1994-01-01

    A pair of degenerate polymerase chain reaction (PCR) primers (LEI-1, TCG GAT CC[C,T] [G,C]TG GGT AGG GGC GT; LEI-2, ACG GAT CC[G,C] [G,C][A,C]C TAT [A,T]TT ACA CC) defining a 0.15-kb segment ofLeishmania minicircle DNA was constructed. These primers amplified not only inter- but also intraspecifically polymorphic sequences. Individual sequences revealed a higher intraspecific than interspecific divergence. It is concluded that individual sequences are of limited relevance for species determin...

  10. Produção de biomassa de erva-cidreira [Lippia alba (Mill. N.E.Br.] sob adubação com composto de capim elefante inoculado e sem inoculação de actinomicetos Biomass production of Lippia alba (Mill. N.E.Br. under fertilization with compost inoculated elephant grass and without inoculation of actinomycetes

    Directory of Open Access Journals (Sweden)

    E.V.G. Gama

    2012-01-01

    and inoculated with the actinomycete Streptomyces genus, AC16, AC26, AC92 and AC103. The compounds were placed in polyethylene bags containing 10.0 kg of soil added in a proportion equivalent to 20 t ha-1 and re-apply after the first harvest. The harvests of the shoots were taken at 75 and 165 days after transplantation. The roots were harvested after the second harvest. Dealing with organic fertilization promoted the average increase in biomass production of lemon grass 184, 83, 125, 115 and 122% for the dry stem biomass (MSPA in the first harvest, second harvest of MSPA, total shoot biomass (MSTPA, dry biomass of the root (MSR and the total crop biomass (MST, respectively, compared with the control, but no effect of inoculation of actinomycetes in compost. Under the conditions of this study was conducted, it was concluded that the organic compound fertilizer with elephant grass positively influenced the production of dry biomass of L. alba, but the injection of the compounds of the actinomycetes, without influence.

  11. Genomic islands predict functional adaptation in marine actinobacteria

    Energy Technology Data Exchange (ETDEWEB)

    Penn, Kevin; Jenkins, Caroline; Nett, Markus; Udwary, Daniel; Gontang, Erin; McGlinchey, Ryan; Foster, Brian; Lapidus, Alla; Podell, Sheila; Allen, Eric; Moore, Bradley; Jensen, Paul

    2009-04-01

    Linking functional traits to bacterial phylogeny remains a fundamental but elusive goal of microbial ecology 1. Without this information, it becomes impossible to resolve meaningful units of diversity and the mechanisms by which bacteria interact with each other and adapt to environmental change. Ecological adaptations among bacterial populations have been linked to genomic islands, strain-specific regions of DNA that house functionally adaptive traits 2. In the case of environmental bacteria, these traits are largely inferred from bioinformatic or gene expression analyses 2, thus leaving few examples in which the functions of island genes have been experimentally characterized. Here we report the complete genome sequences of Salinispora tropica and S. arenicola, the first cultured, obligate marine Actinobacteria 3. These two species inhabit benthic marine environments and dedicate 8-10percent of their genomes to the biosynthesis of secondary metabolites. Despite a close phylogenetic relationship, 25 of 37 secondary metabolic pathways are species-specific and located within 21 genomic islands, thus providing new evidence linking secondary metabolism to ecological adaptation. Species-specific differences are also observed in CRISPR sequences, suggesting that variations in phage immunity provide fitness advantages that contribute to the cosmopolitan distribution of S. arenicola 4. The two Salinispora genomes have evolved by complex processes that include the duplication and acquisition of secondary metabolite genes, the products of which provide immediate opportunities for molecular diversification and ecological adaptation. Evidence that secondary metabolic pathways are exchanged by Horizontal Gene Transfer (HGT) yet are fixed among globally distributed populations 5 supports a functional role for their products and suggests that pathway acquisition represents a previously unrecognized force driving bacterial diversification

  12. Isolation and biocontrol potential of bacteria and actinomycetes from soils suppressive to Rhizoctonia bare-patch disease in South Australia%南澳大利亚丝核菌抑病土中细菌与放线菌的分离及其对病害的生物防治作用

    Institute of Scientific and Technical Information of China (English)

    杨合同; Maarten RYDER; 唐文华

    2005-01-01

    Bacteria and actinomycetes were quantitatively isolated from a soil collected from Avon, South Australia, which is suppressive to wheat bare-patch disease caused by Rhizoctonia solani anastomosis group 8. The percentage of isolates antagonistic to R. solani AG-8 isolate 21 was measured from the total population of bacteria and actinomycetes. Heat treatment (60℃, 10min.), a process previously shown to remove the suppressive qualities of this soil, significantly reduced the counts of total bacteria and actinomycetes on agar plates, but did not reduce the percentage of antagonists. Nine isolates were chosen from 2700 isolates, based on their strong inhibition of R. solani AG-8 isolate 21, Gaeumannomyces graminis var. tritici (Ggt) isolate 8, Fusarium graminearum isolate Fg, Verticillium dahliae isolate Vd5, Bipolaris sorokiniana isolate Bs, Pythium irregulare isolate BH40, and Rhizoctonia solani AG-4 isolate 1664 causing damping-off of cotton. Seven of the nine antagonistic isolates were either chitinase-or endoglucanase-positive, with strong chitinase production appearing to be associated with strong biocontrol activity.The nine antagonistic isolates were identified as Bacillus megaterium (isolate Ap25), B. subtilis (isolate Ap113), Streptomyces spp. (isolate Ap117), Bacillus coagulans (isolate Ap123), Streptoverticillium reticulum (isolate Ap89), Cellulomonas flavigena (isolate Ap75) or were actinomycetes (isolates Ap116, Ap111 and Ap139).B. megaterium Ap25 and B. subtilis Ap113 were the most effective in disease reduction and seedling growth promotion.These two isolates were inhibitory in vitro to a beneficial Trichoderma pseudokoningii isolate A5MH, which was isolated from the same soil sample, but did not significantly reduce the efficacy of A5MH in disease control and seedling growth promotion.%从南澳大利亚埃文采集的土壤样品中计数分离了细菌和放线菌,该土壤对Rhizoctonia solani 融合群8引起的小麦根腐病具有抑制作

  13. Isolating of antifungal activity substance from endophytic actinomycete Lj20 and the role in disease control%放线菌Lj20抗真菌物质的分离及其在病害防治中的作用

    Institute of Scientific and Technical Information of China (English)

    陈红兵; 马林; 韩巨才; 曹挥

    2011-01-01

    Endophytic actinomycete Lj20 with antifungal activity was isolated from healthy capsicum plants. In order to determine its potential application in biological control, the antifungal activity substance was separated and purified from metabolites of Lj20 by the means of macroporous absorbing resin,centrifugal thin layer chromatography and column chromatography. The inhibitory efficacy of Lj20 metabolites on Botrytis cinerea Pers was also studied by means of the inhibition rate of mycelium growth in vitro and the control efficacy in the greenhouse. The results showed that the structure of a compound isolated from the Lj20 metabolites was identified as 3, 5-di-tert-butyl-4-hydroxybenzyl methyl ether by analysis of IR (infrared spectroscopy) and 1H-NMR (proton nuclear magnetic resonance spectroscopy) spectroscopic data. This compound indicated the inhibition efficacy on B. cinerea in vitro with the EC50 was 174.94 mg/L. In addition, the control efficacy of crude extracts from Lj20 fermentation on B. cinerea reached 62.5% at the concentration of 500 mg/L in the greenhouse experiments, indicating that this endophytic actinomycete Lj20 had a potential value for further exploitation and utilization.%菌株Lj20是从健康辣椒植株分离得到的一株有杭真菌活性的植物内生放线菌,为了进一步明确其生物防治潜力,利用大孔吸附树脂、离心薄层层析以及柱层析等技术对Lj20代谢产物中的抗真菌活性物质进行了分离和提纯,并采用生长速率法测定了其代谢产物对黄瓜灰霉病菌的抑制作用,同时在温室中对Lj20发酵液粗提物的防病效果进行了试验.从Lj20代谢产物中分离得到一个抗真菌活性物质,该化合物时黄瓜灰霉病菌具有较强抑制作用,EC50值为174.94 mg/L;500mg/LLj20发酵液粗提物对黄瓜灰霉病的防治效果达62.5%;经鉴定其化合物结构为3,5-二叔丁基-4-羟基-卞基甲醚.结果表明,放线菌Lj20有进一步开发和利用的价值.

  14. 五味子叶枯病病原菌的生物学特性及其拮抗放线菌的初筛∗%Biological Characteristics of the Pathogen of Schisandra chinensis Leaf Blight and Screening of Antagonistic Actinomycete Strain against the Pathogen

    Institute of Scientific and Technical Information of China (English)

    王壮; 张爱华; 雷锋杰; 匙坤; 张连学

    2015-01-01

    采用室内平皿培养法研究五味子叶枯病菌的生物学特性,平板对峙法筛选拮抗放线菌。结果表明:叶枯病病原菌在PDA及PDBA培养基上最有利于菌丝生长及产孢;温度对菌丝生长和产孢量影响较大,25℃为其最适温度,同样温度下,黑暗条件显著有利于产生孢子,光照更利于菌丝生长;pH 6~7为菌株生长最适pH;最佳碳、氮源分别为果糖及蛋白胨;孢子致死温度测定为54℃。筛选到2株对五味子叶枯病病原菌拮抗效果较好的放线菌A-25-8和A38,其拮抗率分别为66�26%和66�10%。%Petri dish culture method was used to study biological characteristics of Schisandra chinensis leaf blight pathogen, and plate confrontation method was used to screen antagonistic actino⁃mycetes. The results showed that mycelia grew faster and spore generated more in medium PDA and PDBA. Temperature affected mycelia growth and spore generation at 25 ℃. At the same tempera⁃ture, dark condition was significantly beneficial for spore generation and light condition was benefi⁃cial for mycelial growth. pH 6~7 was most suitable for the pathogen. Fructose and peptone were the best carbon source and nitrogen source for the pathogen. Deadly temperature for the spore was 54 ℃. Two strains ( A-25-8 and A38 ) of the 28 actinomycetes had potential antagonistic effects against leaf blight pathogen and inhibition rate was 66�26% and 66�10%, respectively.

  15. The function of lexical motifs in the organization of the Actinomycetes 5S rRNAs A função dos motivos léxicos na organização do 5S rRNAs de Actinomicetes

    Directory of Open Access Journals (Sweden)

    Sandra M Rodrigues-Subacius

    2007-09-01

    Full Text Available This work shows results obtained by employing the linguistic method to identify biologically meaningful sites in Actinomycetes 5S rRNAs. The approach adopted identifies triplet-words, along the base sequence of 5S rRNA, located mainly at the alpha and beta domains of the 5S secondary structure. There are triplet-words representing universal protein binding sites that include important prokaryote signatures, and sites strategically located in critical regions related to the formation of the 5S ribonucleoproteins (RNP complex. In those sites, where the GC pressure promoted substitutions, the analysis demonstrates that alterations did not affect their biological significance. Sites formed by GGY (or more rarely GGR, continued to play an important role as ribosomal proteins rpL18 and rpL5 protein receptors. The data suggest that instead of increasing the molecular variability, expected for the diversity in species and habitats occupied for the group, GC pressure functioned as a reducer mechanism for the inter-specific diversity.Neste trabalho são apresentados resultados obtidos empleando o método linguístico para identificar sítios no 5S rRNAs de actinomicetes com significado biológico. A abordagem identificou palavras-tripletes, junto com a sequência de bases do 5S rRNAs, localizados principalmente nos domínios alfa e beta da estrutura secundária. Entre eles, existem palavras-tripletes que representam sítios de ligação de proteínas universais, que incluem importantes assinaturas procarióticas, além de sítios estrategicamente colocados em regiões críticas relacionados com a formação do complexo 5S ribonucleoproteína (RNP. Nestes sítios, onde a pressão GC promove substituições, as alterações não afetaram seu significado biológico. Sítios formados por GGY (ou mais raramente GER, jogam um papel importante como receptores de proteínas ribossomicas rpL18 e rpL5. Os dados também sugerem que ao contrário de aumentar a

  16. 新疆高盐极端环境可培养放线菌的的种群及其生物活性初步研究%Preliminary studies on population and bioactivity of educable actinomycetes from hyperhaline extreme environment in xinjiang

    Institute of Scientific and Technical Information of China (English)

    阿尔新; 旭格拉; 张金辉

    2013-01-01

    Objective To study the population and bioactivity of actinomycetes from soil in hyperhaline region of Xingjang ,China and accumulate microbial resources .Methods Using two isolation methods ,four different kinds of cultural media ,123 isolates were purified from twenty e soil samples in salt field of Fuhai county of Altay and Lopnor area .100 among 123 strains were cultured and both of their cultural broths and its organic extracts were assayed by antibacterial andnematicide model .Based on the morphological characteristics and biological activity ,61 strains were selected to carry out the 16S rRNA sequences test .Results 100 isolates were purified ,43strains exhibi-ted positive Results in one or two screening model ,the total positive rate was 43% .the 16S rRNA sequences test showed that the 61 strains belongs to 7 different genera ,including Streptomyces ,Nocardiopsis ,Pseudonocardia ,Prauserella ,Saccharopolyspora Halophilic , Actinomyces and Thermomonospora .The sequence similarity of strain L-068 may be a potential new species .Conclusion The studies dem-onstrated there are untapped actinomycetal resources e in hyperhaline region of Xingjang ,China and its bioactive secondary metabolites de-served further exploration for microbial drugs .%目的:积累微生物资源,研究从土壤中选择性分离放线菌的种群及其次生代谢产物的生物活性评价。方法采用两种分离方法,4种高盐培养基对来自新疆高盐环境-阿勒泰福海县盐场和罗布泊地区等采集的土壤样品中的放线菌进行了选择性分离纯化;以3种致病真菌灰葡萄孢菌(Botrytis cinerea)、番茄早疫病菌(Alternaria solani)、稻瘟病菌(Magnaporth grisea)和4种致病细菌大肠埃希氏(Escherichia coli)、金黄色葡萄球菌(Staphy lococcus aureus)、枯草芽孢杆菌(Bacillus subtilis),草分枝杆菌(Mycobacterium phlei)为指示菌,对其中分离的100株放线菌发酵液及其乙酸乙酯

  17. [Enzyme activity of an actinomycete producer of carotenes and macrotetrolides].

    Science.gov (United States)

    Nefelova, M V; Sverdlova, A N

    1982-01-01

    The activity of pyruvate dehydrogenase and dehydrogenases of the tricarboxylic acid cycle was assayed in the mycelium of Streptomyces chrysomallus var. Carotenoides growing under different conditions of the medium. The activity of the enzymes increased when acetic, citric and succinic acids were added at different periods of the growth. Moreover, addition of the acids increased the time of intensive functioning of the dehydrogenases whose activity abruptly decreased after 60 h of the growth under the control conditions.

  18. Hyoscyamine-producing marine Actinomycetes from Lagos Lagoon sediment

    Institute of Scientific and Technical Information of China (English)

    Davies; Olabisi; Flora; Adeleye; Isaac; Adeyemi; Wang; Peng; George

    2015-01-01

    Objective:To isolate and screen Actinoniycetes from Lagos Lagoon soil sediments for production of bioactive metabolites.Methods:Sediment samples were collected from four different locations of Lagos Lagoon and were dried for 2 weeks after which the Actinoniycetes were isolated by serial dilution using the spread plate method on starch casein and Kuster’s agar supplemented with 80 ug/mL cycloheximide to prevent fungal growth.The plates were incubated at 28 C for 1-2 weeks.Isolates were selected based on their colonial characteristics as well as their Gram’s reaction and subciiltured using the same media for isolation until pure cultures were obtained and incubated at 28 C for 3 d.Thereafter,they were inoculated into starch casein and Kuster’s broth media and incubated for 8 d.The secondary metabolites were screened for antimicrobial activity against the following microorganisms:methicillin resistant Staphylococcus aureus.Staphylococcus aureus ATCC 29213.Escherichia coli ATCC 29522.Pseudomonas aeruginosa ATCC 27853.Candida albicans and Enterocolitis faecal is ATCC 29212.Coagulasenegative staphylococci isolated from HIV patients were also used(Staphylococcus warneri.Staphylococcus xylosus and Staphylococcus epidennidis).The antimicrobial metabolites of the Actinoniycetes isolates were identified using gas chromatography(GC).Results:Crude extracts of isolates showed antimicrobial activity against some of the test organisms.The GC data analysis showed the antibiotic profile of these isolates.Conclusions:Analysis of the crude extracts of the isolates using GC method,revealed the presence of antibiotics including an anticholinergic hyoscyamine among other conclusions.

  19. Caerulomycin A- An antifungal compound isolated from marine actinomycetes.

    Digital Repository Service at National Institute of Oceanography (India)

    Ambavane, V.; Tokdar, P.; Parab, R.; Sreekumar, E.S.; Mahajan, G.B.; Mishra, P.D.; DeSouza, L.; Ranadive, P.

    cyanogriseus. Overall, Caerulomycin A was isolated from marine invertebrate-associated Actinoalloteichus sp. using optimized medium and fermentation conditions. Acknowledgements The authors are very grateful to Dr. Arun Balakrishnan, Senior Vice... Genetics Analysis Using Maximum Likelihood, Evolutionary Distance and Maximum Parsimony Methods. Molecular Biology and Evolution, 28, 2731-2739. http://dx.doi.org/10.1093/molbev/msr121 [24] Antifungals Market to 2017—Generic Erosion of Major Polyenes...

  20. The gastric caeca of pentatomids as a house for actinomycetes

    Directory of Open Access Journals (Sweden)

    Zucchi Tiago D

    2012-06-01

    Full Text Available Abstract Background Microbes are extensively associated with insects, playing key roles in insect defense, nutrition and reproduction. Most of the associations reported involve Proteobacteria. Despite the fact that Actinobacteria associated with insects were shown to produce antibiotic barriers against pathogens to the hosts or to their food and nutrients, there are few studies focusing on their association with insects. Thus, we surveyed the Actinobacteria diversity on a specific region of the midgut of seven species of stinkbugs (Hemiptera: Pentatomidae known to carry a diversity of symbiotically-associated Proteobacteria. Results A total of 34 phylotypes were placed in 11 different Actinobacteria families. Dichelops melacanthus held the highest diversity with six actinobacteria families represented by nine phylotypes. Thyanta perditor (n = 7, Edessa meditabunda (n = 5, Loxa deducta (n = 4 and Pellaea stictica (n = 3 were all associated with three families. Piezodorus guildini (n = 3 and Nezara viridula (n = 3 had the lowest diversity, being associated with two (Propionibacteriaceae and Mycobacteriaceae and one (Streptomyceataceae families, respectively. Corynebacteriaceae and Mycobacteriaceae were the most common families with phylotypes from three different insect species each one. Conclusions Many phylotypes shared a low 16S rRNA gene similarity with their closest type strains and formed new phyletic lines on the periphery of several genera. This is a strong indicative that stinkbug caeca can harbor new species of actinobacteria, which might be derived from specific associations with the species of stinkbugs studied. Although the well-known role of actinobacteria as a source of biomolecules, the ecological features of these symbionts on the stinkbugs biology remain unknown.

  1. Gas vesicles in actinomycetes : old buoys in novel habitats?

    NARCIS (Netherlands)

    Keulen, Geertje van; Hopwood, David A.; Dijkhuizen, Lubbert; Sawers, R. Gary

    2005-01-01

    Gas vesicles are gas-filled prokaryotic organelles that function as flotation devices. This enables planktonic cyanobacteria and halophilic archaea to position themselves within the water column to make optimal use of light and nutrients. Few terrestrial microbes are known to contain gas vesicles. G

  2. Identification of endophytic actinomycete St24 tomato plants from and its application in bio-control of gray mold disease%番茄内生菌St24的鉴定及其对灰霉病的生防作用

    Institute of Scientific and Technical Information of China (English)

    王美琴; 马林; 韩巨才; 刘慧平; 贺运春

    2012-01-01

    从番茄植株根茎部分离到l株有抑菌活性的植物内生放线菌菌株St24,对其分类地位以及对灰霉病菌的防治效果进行研究.结果表明:菌株St24为酒红链霉菌.St24发酵液经石油醚萃取得到的粗提物对多种病原菌有抑制作用,其中对灰霉病菌的抑制作用最强,抑制菌丝生长的EC50为11.78 mg ·L-1.粗提物处理灰霉菌后,菌丝量减少,菌丝体皱缩、断裂、原生质外渗,菌体细胞表面有许多瘤状畸形.处理后的灰霉病菌培养液在260 nm处比对照多出现一吸收峰,说明粗提物对病原菌的细胞膜透性有影响.经盆栽试验,St24发酵液对番茄灰霉病有保护和治疗的作用,100 mg·L-1粗提物叶面喷雾的保护作用效果最好,24 h后防效达到94.3%,120 h后为85.4%.%An endophytic actinomycete strain St24 with acaricidal activity was isolated from the root-stem junction of tomato plants, with the taxonomic position of the strain and its control effect against gray mold disease investigated. The St24 was identified as Streptomyces vinaceus, and its broth' s petroleum ether extracts could inhibit a variety of pathogens. The inhibitory effect of the extracts on Botrytis cinerea was the strongest, with the EC50 of inhibiting B. cinerea mycelia growth being 11. 78 mg · L-1. After treated with the extracts, the amount of the mycelia decreased, and the mycelia became crenate or broken, with the protoplast extravasated and the tuberculate malformation appeared. The B. cinerea culture treated with the extracts showed the maximum absorption at 260 nm, which was absent in the control, indicating that the St24 extracts increased the pathogens cell membrane permeability. Pot experiment showed that the extracts could protect tomato plants against B. cinerea. Foliar spraying the extracts at 100 mg · L-1 had the best protective effect, with the controlling effect reached 94.3% after 24 h and 85.4% after 120 h.

  3. 海洋放线菌Y12-26代谢产物中bafilomycins分离纯化及结构鉴定%Isolation, purification and structure identification of secondary metabolites produced by marine actinomycete Y12-26

    Institute of Scientific and Technical Information of China (English)

    魏刚; 苏超; 张道敬; 宗志友; 斯聪聪; 陶黎明

    2011-01-01

    Objective To know the active components in the secondary metabolites produced by marine actinomycete Y 12-26 exhibited antagonistic activity against Pyricularia oryzae.Methods By bioassay-guided isolation and purification, the active antifungal compounds were isolated and purified from the culture extract of strain Y12-26 with solvent extract, silica gel chromatography, thin layer chromatography, and high performance liquid chromatography and other ways, and their structure were elucidation with the help of spectra data analysis of UV, ESIMS, NMR and others.Results Three antifungal macrolide compounds Y12-26-A2a, A3a and A3b were isolated from the culture extract of strain Y12-26.the molecular formula of the compound Y12-26-A2a was confirmed as C35H56O8,as the same as the known compound bafilomycin D.The molecular formula of the compound Y12-26-A3a was confirmed as C35H58O9, the structure is the same as bafilomycin Al.The molecular formula of the compound Y 12-26-A3b was confirmed as C35H58O8, which was identificated as a new compound named bafilomycin K.Conclusion The MIC of the three compoundsY 12-26-A2a, A3a and A3b against P oryzae were 125, 16 and 31 μg/mL.%目的 了解海洋放线菌Y12-26的次级代谢产物中对稻瘟病菌(Pyricularia oryzae)等植物病原真菌具有较好的拮抗活性的具体化合物.方法 以P.oryzae指示菌进行活性跟踪,对其代谢物进行分离提取,通过有机溶剂萃取、硅胶柱层析、TLC和HPLC制备等方法分离得到活性化合物,并通过UV、MS、NMR等方法进行结构鉴定.结果 从海洋放线菌Y12-26发酵物中分离得到了3个大环内酯类活性化合物Y12-26-A2a、A3a和A3b,确定Y12-26-A2a分子式为CHO,与bafilomycin D结构相同;Y12-26-A3a分子式为CHO,与bafilomycin A1结构相同;Y12-26-A3b为新结构化合物,分子式为CHO,命名为bafilomycin K.结论 化合物Y12-26-A2a、A3a和A3b对P.oryzae的MIC分别为125、16和31μg/mL.

  4. Geodermatophilus poikilotrophi sp. nov.: A Multitolerant Actinomycete Isolated from Dolomitic Marble

    Directory of Open Access Journals (Sweden)

    Maria del Carmen Montero-Calasanz

    2014-01-01

    Full Text Available A novel Gram-reaction-positive, aerobic actinobacterium, tolerant to mitomycin C, heavy metals, metalloids, hydrogen peroxide, desiccation, and ionizing- and UV-radiation, designated G18T, was isolated from dolomitic marble collected from outcrops in Samara (Namibia. The growth range was 15–35°C, at pH 5.5–9.5 and in presence of 1% NaCl, forming greenish-black coloured colonies on GYM Streptomyces agar. Chemotaxonomic and molecular characteristics of the isolate matched those described for other representatives of the genus Geodermatophilus. The peptidoglycan contained meso-diaminopimelic acid as diagnostic diaminoacid. The main phospholipids were phosphatidylethanolamine, phosphatidylcholine, phosphatidylinositol, and small amount of diphosphatidylglycerol. MK-9(H4 was the dominant menaquinone and galactose was detected as diagnostic sugar. The major cellular fatty acids were branched-chain saturated acids iso-C16:0 and iso-C15:0 and the unsaturated C17:1ω8c and C16:1ω7c. The 16S rRNA gene showed 97.4–99.1% sequence identity with the other representatives of genus Geodermatophilus. Based on phenotypic results and 16S rRNA gene sequence analysis, strain G18T is proposed to represent a novel species, Geodermatophilus poikilotrophi. Type strain is G18T (= DSM 44209T = CCUG 63018T. The INSDC accession number is HF970583. The novel R software package lethal was used to compute the lethal doses with confidence intervals resulting from tolerance experiments.

  5. Sannastatin, a novel toxic macrolactam polyketide glycoside produced by actinomycete Streptomyces sannanensis.

    Science.gov (United States)

    Yang, Sheng-Xiang; Gao, Jin-Ming; Zhang, An-Ling; Laatsch, Hartmut

    2011-07-01

    A new rare 20-membered macrocyclic lactam incorporating a diene conjugated olefin, designated sannastatin (1), together with the known structurally related vicenistatin (2), has been isolated from the cultures of Streptomyces sannanensis, a bacteria found in the feces of Ailuropoda melanoleuca. The structure of the new compound was established on the basis of extensive spectroscopic analyses including 1D- and 2D-NMR ((1)H-(1)H COSY, TOCSY, HSQC, HMBC, and NOESY) experiments. Compounds 1 and 2 displayed significant growth inhibitory activity against the brine shrimp (Artemia salina) larvae. PMID:21640585

  6. Four new antibacterial xanthones from the marine-derived actinomycetes Streptomyces caelestis

    KAUST Repository

    Liu, Ling-Li

    2012-11-20

    Four new polycyclic antibiotics, citreamicin ? A (1), citreamicin ? B (2), citreaglycon A (3), and dehydrocitreaglycon A (4), were isolated from marine-derived Streptomyces caelestis. The structures of these compounds were elucidated by 1D and 2D NMR spectra. All four compounds displayed antibacterial activity against Staphylococcus haemolyticus, Staphylococcus aureus, and Bacillus subtillis. Citreamicin ? A (1), citreamicin ? B (2) and citreaglycon A (3) also exhibited low MIC values of 0.25, 0.25, and 8.0 ?g/mL, respectively, against methicillin-resistant Staphylococcus aureus (MRSA) ATCC 43300. 2012 by the authors; licensee MDPI.

  7. Biosynthetic investigations of ansamycin natural products from marine-derived actinomycetes

    OpenAIRE

    Wilson, Micheal Christopher

    2011-01-01

    Ansamycin polyketides from actinobacteria include the potent antibiotic and anticancer agents rifamycin SV, ansamitocin P-3, and geldanamycin. These natural product macrolactams are characterized by an mC₇N structural unit derived from the aromatic acid 3-amino-5-hydroxybenzoate, which is carboxy extended by multimodular polyketide synthases utilizing primarily acetate and propionate building blocks prior to macrolactam cyclization. Herein, I report a multidisciplinary investigation of the bi...

  8. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

    Science.gov (United States)

    Bentley, S D; Chater, K F; Cerdeño-Tárraga, A-M; Challis, G L; Thomson, N R; James, K D; Harris, D E; Quail, M A; Kieser, H; Harper, D; Bateman, A; Brown, S; Chandra, G; Chen, C W; Collins, M; Cronin, A; Fraser, A; Goble, A; Hidalgo, J; Hornsby, T; Howarth, S; Huang, C-H; Kieser, T; Larke, L; Murphy, L; Oliver, K; O'Neil, S; Rabbinowitsch, E; Rajandream, M-A; Rutherford, K; Rutter, S; Seeger, K; Saunders, D; Sharp, S; Squares, R; Squares, S; Taylor, K; Warren, T; Wietzorrek, A; Woodward, J; Barrell, B G; Parkhill, J; Hopwood, D A

    2002-05-01

    Streptomyces coelicolor is a representative of the group of soil-dwelling, filamentous bacteria responsible for producing most natural antibiotics used in human and veterinary medicine. Here we report the 8,667,507 base pair linear chromosome of this organism, containing the largest number of genes so far discovered in a bacterium. The 7,825 predicted genes include more than 20 clusters coding for known or predicted secondary metabolites. The genome contains an unprecedented proportion of regulatory genes, predominantly those likely to be involved in responses to external stimuli and stresses, and many duplicated gene sets that may represent 'tissue-specific' isoforms operating in different phases of colonial development, a unique situation for a bacterium. An ancient synteny was revealed between the central 'core' of the chromosome and the whole chromosome of pathogens Mycobacterium tuberculosis and Corynebacterium diphtheriae. The genome sequence will greatly increase our understanding of microbial life in the soil as well as aiding the generation of new drug candidates by genetic engineering. PMID:12000953

  9. Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis

    Directory of Open Access Journals (Sweden)

    McGuire Abigail

    2012-03-01

    Full Text Available Abstract Background The sequence of the pathogen Mycobacterium tuberculosis (Mtb strain H37Rv has been available for over a decade, but the biology of the pathogen remains poorly understood. Genome sequences from other Mtb strains and closely related bacteria present an opportunity to apply the power of comparative genomics to understand the evolution of Mtb pathogenesis. We conducted a comparative analysis using 31 genomes from the Tuberculosis Database (TBDB.org, including 8 strains of Mtb and M. bovis, 11 additional Mycobacteria, 4 Corynebacteria, 2 Streptomyces, Rhodococcus jostii RHA1, Nocardia farcinia, Acidothermus cellulolyticus, Rhodobacter sphaeroides, Propionibacterium acnes, and Bifidobacterium longum. Results Our results highlight the functional importance of lipid metabolism and its regulation, and reveal variation between the evolutionary profiles of genes implicated in saturated and unsaturated fatty acid metabolism. It also suggests that DNA repair and molybdopterin cofactors are important in pathogenic Mycobacteria. By analyzing sequence conservation and gene expression data, we identify nearly 400 conserved noncoding regions. These include 37 predicted promoter regulatory motifs, of which 14 correspond to previously validated motifs, as well as 50 potential noncoding RNAs, of which we experimentally confirm the expression of four. Conclusions Our analysis of protein evolution highlights gene families that are associated with the adaptation of environmental Mycobacteria to obligate pathogenesis. These families include fatty acid metabolism, DNA repair, and molybdopterin biosynthesis. Our analysis reinforces recent findings suggesting that small noncoding RNAs are more common in Mycobacteria than previously expected. Our data provide a foundation for understanding the genome and biology of Mtb in a comparative context, and are available online and through TBDB.org.

  10. Antiviral property of marine actinomycetes against white spot syndrome virus in penaeid shrimps

    Digital Repository Service at National Institute of Oceanography (India)

    Kumar, S.S.; Philip, R.; Achuthankutty, C.T.

    components, and fucoidan, an algal polysacch a- ride 19,20 . In another study, oral administration of LPS at the rate of 20 ?g LPS per kg shrimp body weight ? 1 day ? 1 for 7 days against penaeid acute viraemia (PAV) resulted in 75% survival 20.... , Enhancement of disease resistance of kuruma shrimp, Penaeus japonicus, after oral administration of pept i do - glycan derived from Bifidobacterium thermophilum. Aquacu l ture , 1998, 164 , 277 ? 288. 20. Takahashi, Y. et al. , Enhancement of disease...

  11. Two Antimycin A Analogues from Marine-Derived Actinomycete Streptomyces lusitanus

    Directory of Open Access Journals (Sweden)

    Peiyuan Qian

    2012-03-01

    Full Text Available Two new antimycin A analogues, antimycin B1 and B2 (1–2, were isolated from a spent broth of a marine-derived bacterium, Streptomyces lusitanus. The structures of 1 and 2 were established on the basis of spectroscopic analyses and chemical methods. The isolated compounds were tested for their anti-bacterial potency. Compound 1 was found to be inactive against the bacteria Bacillus subtilis, Staphyloccocus aureus, and Loktanella hongkongensis. Compound 2 showed antibacterial activities against S. aureus and L. hongkongensis with MIC values of 32.0 and 8.0 μg/mL, respectively.

  12. Crystal structure of the caseinolytic protease gene regulator, a transcriptional activator in actinomycetes.

    Science.gov (United States)

    Russo, Santina; Schweitzer, Jens-Eric; Polen, Tino; Bott, Michael; Pohl, Ehmke

    2009-02-20

    Human pathogens of the genera Corynebacterium and Mycobacterium possess the transcriptional activator ClgR (clp gene regulator) which in Corynebacterium glutamicum has been shown to regulate the expression of the ClpCP protease genes. ClgR specifically binds to pseudo-palindromic operator regions upstream of clpC and clpP1P2. Here, we present the first crystal structure of a ClgR protein from C. glutamicum. The structure was determined from two different crystal forms to resolutions of 1.75 and 2.05 A, respectively. ClgR folds into a five-helix bundle with a helix-turn-helix motif typical for DNA-binding proteins. Upon dimerization the two DNA-recognition helices are arranged opposite to each other at the protein surface in a distance of approximately 30 A, which suggests that they bind into two adjacent major grooves of B-DNA in an anti-parallel manner. A binding pocket is situated at a strategic position in the dimer interface and could possess a regulatory role altering the positions of the DNA-binding helices. PMID:19019826

  13. Degradation and induction specificity in actinomycetes that degrade p-nitrophenol.

    OpenAIRE

    1993-01-01

    We have isolated two soil bacteria (identified as Arthrobacter aurescens TW17 and Nocardia sp. strain TW2) capable of degrading p-nitrophenol (PNP) and numerous other phenolic compounds. A. aurescens TW17 contains a large plasmid which correlated with the PNP degradation phenotype. Degradation of PNP by A. aurescens TW17 was induced by preexposure to PNP, 4-nitrocatechol, 3-methyl-4-nitrophenol, or m-nitrophenol, whereas PNP degradation by Nocardia sp. strain TW2 was induced by PNP, 4-nitroca...

  14. Degradation and induction specificity in actinomycetes that degrade p-nitrophenol

    Energy Technology Data Exchange (ETDEWEB)

    Hanne, L.F.; Kirk, L.L.; Appel, S.M.; Narayan, A.D.; Bains, K.K. (California State Univ., Chico, CA (United States))

    1993-10-01

    We have isolated two soil bacteria (identified as Arthrobacter aurescens TW17 and Nocardia sp. strain TW2) capable of degrading p-nitrophenol (PNP) and numerous other phenolic compounds. A. aurescens TW17 contains a large plasmid which correlated with the PNP degradation phenotype. Degradation of PNP by A. aurescens TW 17 was induced by preexposure to PNP, 4-nitrocatechol, 3-methyl-4-nitrophenol, or m-nitrophenol, whereas PNP degradation by Nocardia sp. strain TW2 was induced by PNP, 4-nitrocatechol, phenol, p-cresol, or m-nitrophenol. A. aurescens TW17 initially degraded PNP to hydroquinone and nitrite. Nocardia sp. strain TW2 initially converted PNP to hydroquinone or 4-nitrocatechol, depending upon the inducing compound.

  15. A Genomic, Transcriptomic and Proteomic Look at the GE2270 Producer Planobispora rosea, an Uncommon Actinomycete.

    Directory of Open Access Journals (Sweden)

    Arianna Tocchetti

    Full Text Available We report the genome sequence of Planobispora rosea ATCC 53733, a mycelium-forming soil-dweller belonging to one of the lesser studied genera of Actinobacteria and producing the thiopeptide GE2270. The P. rosea genome presents considerable convergence in gene organization and function with other members in the family Streptosporangiaceae, with a significant number (44% of shared orthologs. Patterns of gene expression in P. rosea cultures during exponential and stationary phase have been analyzed using whole transcriptome shotgun sequencing and by proteome analysis. Among the differentially abundant proteins, those involved in protein metabolism are particularly represented, including the GE2270-insensitive EF-Tu. Two proteins from the pbt cluster, directing GE2270 biosynthesis, slightly increase their abundance values over time. While GE2270 production starts during the exponential phase, most pbt genes, as analyzed by qRT-PCR, are down-regulated. The exception is represented by pbtA, encoding the precursor peptide of the ribosomally synthesized GE2270, whose expression reached the highest level at the entry into stationary phase.

  16. Optimization of the Fermentation Process of Actinomycete Strain Hhs.015T

    Directory of Open Access Journals (Sweden)

    Xinxuan Wang

    2010-01-01

    inoculation volume of 15.8%. The antimicrobial activity was increased by 20% by optimizing the environmental parameters. The results obtained allow an efficient production of components with antimicrobial activity by strain Hhs.015T on a large scale at low costs.

  17. Cure from the cave: volcanic cave actinomycetes and their potential in drug discovery

    Directory of Open Access Journals (Sweden)

    Cheeptham N.

    2013-01-01

    Full Text Available Volcanic caves have been little studied for their potential as sources of novel microbial species and bioactive compounds with new scaffolds. We present the f irst study of volcanic cave microbiology from Canada and suggest that this habitat has great potential for the isolation of novel bioactive substances. Sample locat ions were plot ted on a contour map that was compiled in ArcView 3.2. Over 400 bacterial isolates were obtained from the Helmcken Falls cave in Wells Gray Provincial Park, British Columbia. From our preliminary screen, of 400 isolates tested, 1% showed activity against extended spectrum ß-lactamase E. coli, 1.75% against Escherichia coli, 2.25% against Acinetobacter baumannii, and 26.50% against Klebsiella pneumoniae. In addition, 10.25% showed activity against Micrococcus luteus, 2% against methicillin resistant Staphylococcus aureus, 9.25% against Mycobacterium smegmatis, 6.25% Pseudomonas aeruginosa and 7.5% against Candida albicans. Chemical and physical characteristics of three rock wall samples were studied using scanning electron microscopy and f lame atomic absorption spectrometry. Calcium (Ca, iron (Fe, and aluminum (Al were the most abundant components while magnesium (Mg, sodium (Na, arsenic (As, lead (Pb, chromium (Cr, and barium (Ba were second most abundant with cadmium (Cd and potassium (K were the least abundant in our samples. Scanning electron microscopy (SEM showed the presence of microscopic life forms in all three rock wall samples. 16S rRNA gene sequencing of 82 isolates revealed that 65 (79.3% of the strains belong to the Streptomyces genus and 5 (6.1% were members of Bacillus, Pseudomonas, Nocardia and Erwinia genera. Interestingly, twelve (14.6% of the 16S rRNA sequences showed similarity to unidentif ied ribosomal RNA sequences in the library databases, the sequences of these isolates need to be further investigated using the EzTaxon-e database (http://eztaxon-e. ezbiocloud.net/ to determine whether or not these are novel species. Nevertheless, this suggests the possibility that they could be unstudied or rare bacteria. The Helmcken Falls cave microbiome possesses a great diversity of microbes with the potential for studies of novel microbial interactions and the isolation of new types of antimicrobial agents.

  18. Streptomyces xinjiangensis sp. nov., an actinomycete isolated from Lop Nur region.

    Science.gov (United States)

    Cheng, Cong; Li, Yu-Qian; Asem, Mipeshwaree Devi; Lu, Chun-Yan; Shi, Xiao-Han; Chu, Xiao; Zhang, Wan-Qin; Di An, Deng-; Li, Wen-Jun

    2016-10-01

    A novel actinobacterial strain, designated LPA192(T), was isolated from a soil sample collected from Lop Nur, Xinjiang Uygur Autonomous Region, Northwest China. A polyphasic approach was used to investigate the taxonomic position of strain LPA192(T). The isolate showed morphological and chemotaxonomic characteristics typical of members of the genus Streptomyces. Peptidoglycan was found to contain LL-diaminopimelic acid as the diagnostic diamino acid. The predominant menaquinones were MK-9(H6) and MK-10(H4). Polar lipids were phosphatidylethanolamine, diphosphatidylglycerol and phosphatidylinositol. Major cellular fatty acids consist of C16:0, anteiso-C15:0 and C18:1 ω9c. The sugar in whole-cell hydrolysates was mannose. Phylogenetic analysis indicated that strain LPA192(T) is closely related to Streptomyces tanashiensis LMG 20274(T) (99.3 %), Streptomyces gulbargensis DAS131(T) (99.3 %), Streptomyces nashvillensis NBRC 13064(T) (99.3 %), Streptomyces roseolus NBRC 12816(T) (99.2 %) and Streptomyces filamentosus NBRC 12767(T) (99.1 %) while showing below 98.5 % sequencing similarities with other validly published Streptomyces species. However, DNA-DNA relatedness values between LPA192(T) and the closely related type strains were below 40 %, which are much lower than 70 % threshold value for species delineation. The genomic DNA G + C content of strain LPA192(T) was 69.3 mol %. Based on the differences in genotypic and phenotypic characteristics from the closely related strains, strain LPA192(T) is considered to represent a novel species of the genus Streptomyces for which the name Streptomyces xinjiangensis sp. nov. is proposed. The type strain is LPA192(T) (=KCTC 39601(T) = CGMCC 4.7288(T)). PMID:27209413

  19. Isolation and molecular identification of actinomycetes from mycetoma patients in Sudan

    Directory of Open Access Journals (Sweden)

    Mogahid M Elhassan

    2013-01-01

    Full Text Available Introduction: In order to minimize chance of amputation due to actinomycetoma, it is important to correctly identify the causative agents. Microscopic examination of grains is not definite and further confirmatory diagnostic tests are needed. This study aims to investigate the prevalence of actinomycetoma and to explore the usefulness of strb1 gene in the diagnosis of the disease. Materials & Methods: The present study is a prospective cross-section laboratory-based study in which clinical samples (n = 100 from patients with mycetoma lesions were collected. The samples were cultured on Lowenstein Jensen and glucose yeast extract agar media. Grown colonies were initially identified using Gram′s stain, Ziehl Neelsen stain, and selected biochemical reactions. Confirmation was done by the analysis of polymerase chain reaction amplified strb1 gene. Results: Actinomycetoma was represented by a high ratio (12% among the study population. Nine out of the 12 isolates (75% were found to belong to the genus Streptomyces; whereas three isolates (25% were identified as Nocardia spp. on the basis of phenotypic and mycolic acid contents. Conclusion: It could be concluded that actinomycetoma exists with significant prevalence (12% among patients investigated in the present study. Streptomyces is the most important etiological agent of actinomycetoma compared to Nocardia.

  20. Selection of a Thermophilic Alkalitolerant Actinomycete and Conditions for CMCase Production

    Institute of Scientific and Technical Information of China (English)

    QI Yun; ZHAO Lin; LIAO Yinzhang; TAN Xin

    2005-01-01

    Five thermophilic strains that can degrade cellulose were isolated from the compost of a waste management in Guangzhou, China. Since one of them degraded cellulose effectively, it was chosen as the study strain. Based on its morphology, spores′ susceptibility to heat, cell wall composition and other characteristics, the organism was classified as Thermomonospora fusca. Conditions for production of carboxy methyl cellulase (CMCase) were examined. The optimal temperature and pH value for enzyme production were 50 ℃ and 10.5, respectively. Cellulosic materials and easily metabolisable carbohydrates served as carbon sources for the growth of the strain. Only cotton, avicel,carboxy methyl cellulose (CMC) acted as potent inducers for the production of cellulases by this strain. Despite excellent growth on easily metabolisable carbohydrates, only constitutive levels of cellulases were produced. The optimal carbon and nitrogen sources for CMCase production were cotton and soybean respectively. The high thermostability, wide pH stability, and cheap nitrogen source show well potential use for composting treatment and commercial detergents.

  1. Auraticoccus monumenti gen. nov., sp. nov., an actinomycete isolated from a deteriorated sandstone monument.

    Science.gov (United States)

    Alonso-Vega, Pablo; Carro, Lorena; Martínez-Molina, Eustoquio; Trujillo, Martha E

    2011-05-01

    A Gram-type-positive, strictly aerobic actinobacterium, designated strain MON 2.2(T), was isolated from the surface of a sandstone monument. Cells with a coccoid shape, arranged in pairs or clusters, were non-motile and did not produce spores. The 10 closest 16S rRNA gene sequence matches (~95 % similarity) found in the public databases were uncultured actinobacteria, while the closest cultured members indicated a phylogenetic relationship with members of the family Propionibacteriaceae (92-95 % similarity). Subsequent phylogenetic analysis placed the new isolate within the radiation of the genera Friedmanniella and Microlunatus, but forming an independent branch. Chemotaxonomic markers were consistent with the classification of strain MON 2.2(T) in the family Propionibacteriaceae, amongst the genera containing ll-diaminopimelic acid in their peptidoglycan. Characteristic fatty acids iso-C(15 : 0) and anteiso-C(15 : 0) also supported its affiliation to this taxon; however, polar lipid and menaquinone compositions clearly differentiated strain MON 2.2(T) from other genera in the family. On the basis of these results and additional physiological data obtained in the present study, it is proposed that strain MON 2.2(T) be classified in a novel species in a new genus, for which the name Auraticoccus monumenti gen. nov., sp. nov. is proposed. The type strain of Auraticoccus monumenti is MON 2.2(T) ( = CECT 7672(T)  = DSM 23257(T)  = LMG 25551(T)).

  2. Tetrazolium-dye-linked alcohol dehydrogenase of the methylotrophic actinomycete Amycolatopsis methanolica is a three-component complex

    OpenAIRE

    Bystrykh, LV; GOVORUKHINA, NI; Dijkhuizen, L.; Duine, JA; Govorukhina, Natalya I.; Duine, Johannis A.

    1997-01-01

    Tetrazolium-dye-linked alcohol dehydrogenase (TD-ADH) of Amycolatopsis methanolica could be resolved into three protein components, which have been purified. Each of the components has the ability to reconstitute TD-ADH activity when combined with the other two. Component I is identical to the previously characterized methanol :N:N'-dimethyl-4-nitrosoaniline oxidoreductase (MNO), a decameric protein with 50-kDa subunits, each carrying a tightly bound NADPH. Component 2 is a high molecular mas...

  3. Complete genome sequence of Streptomyces sp. strain CFMR 7, a natural rubber degrading actinomycete isolated from Penang, Malaysia.

    Science.gov (United States)

    Nanthini, Jayaram; Chia, Kim-Hou; Thottathil, Gincy P; Taylor, Todd D; Kondo, Shinji; Najimudin, Nazalan; Baybayan, Primo; Singh, Siddharth; Sudesh, Kumar

    2015-11-20

    Streptomyces sp. strain CFMR 7, which naturally degrades rubber, was isolated from a rubber plantation. Whole genome sequencing and assembly resulted in 2 contigs with total genome size of 8.248 Mb. Two latex clearing protein (lcp) genes which are responsible for rubber degrading activities were identified.

  4. Construction of expression vectors for metabolic engineering of the vanillin-producing actinomycete Amycolatopsis sp. ATCC 39116.

    Science.gov (United States)

    Fleige, Christian; Steinbüchel, Alexander

    2014-01-01

    Amycolatopsis sp. ATCC 39116 is able to synthesize the important flavoring agent vanillin from cheap natural substrates. The bacterium is therefore of great interest for the industry and used for the fermentative production of vanillin. In order to improve the production of natural vanillin with Amycolatopsis sp. ATCC 39116, the strain has been genetically engineered to optimize the metabolic flux towards the desired product. Extensive metabolic engineering was hitherto hampered, due to the lack of genetic tools like functional promoters and expression vectors. In this study, we report the establishment of a plasmid-based gene expression system for Amycolatopsis sp. ATCC 39116 that allows a further manipulation of the genotype. Four new Escherichia coli-Amycolatopsis shuttle vectors harboring different promoter elements were constructed, and the functionality of these regulatory elements was proven by the expression of the reporter gene gusA, encoding a β-glucuronidase. Glucuronidase activity was detected in all plasmid-harboring strains, and remarkable differences in the expression strength of the reporter gene depending on the used promoter were observed. The new expression vectors will promote the further genetic engineering of Amycolatopsis sp. ATCC 39116 to get insight into the metabolic network and to improve the strain for a more efficient industrial use. PMID:24743982

  5. Changes in Actinomycetes community structure under the influence of Bt transgenic brinjal crop in a tropical agroecosystem

    OpenAIRE

    Singh, Amit Kishore; Singh, Major; Dubey, Suresh Kumar

    2013-01-01

    Background The global area under brinjal cultivation is expected to be 1.85 million hectare with total fruit production about 32 million metric tons (MTs). Brinjal cultivars are susceptible to a variety of stresses that significantly limit productivity. The most important biotic stress is caused by the Brinjal fruit and shoot Borer (FSB) forcing farmers to deploy high doses of insecticides; a matter of serious health concern. Therefore, to control the adverse effect of insecticides on the env...

  6. Whole-Genome Shotgun Sequencing of Rhodococcus erythropolis Strain P27, a Highly Radiation-Resistant Actinomycete from Antarctica.

    Science.gov (United States)

    Gouvêa Taketani, Rodrigo; Domingues Zucchi, Tiago; Soares de Melo, Itamar; Mendes, Rodrigo

    2013-01-01

    Here, we report the draft genome sequence of radiation-resistant Rhodococcus erythropolis strain P27, isolated from leaves of Deschampsia antarctica Desv. (Poaceae) in the Admiralty Bay area, Antarctica.

  7. Transformation of the Methylotrophic Actinomycete Amycolatopis methanolica with Plasmid DNA : Stimulatory Effect of a pMEA300-Encoded Gene

    NARCIS (Netherlands)

    Vrijbloed, J.W.; Madoń, J.; Dijkhuizen, L.

    1995-01-01

    Amycolatopsis methanolica contains a 13.29-kb plasmid (pMEA300) present both in the free state and integrated at a unique genomic location. A pMEA300-free derivative (strain WV1) was selected, allowing further analysis of pMEA300-encoded functions. Whole cells of strain WV1 could be transformed at h

  8. Optimizing water treatment practices for the removal of actinomycetes and earthy odor in water of Bovilla reservoir

    OpenAIRE

    ADELA KULLAJ; MARGARITA HYSKO

    2014-01-01

    Bovilla reservoir, which is situated 15 km North-East of Tirana the capital city of Albania is one of the major hidrotechnical works of this country. This reservoir is a warm monomictic water body and stratifies higher in the summer season. The predominant trophic state of Bovilla reservoir is oligotrophy. From autumn 2001 this reservoir repeatedly manifests an unpleasant taste and odor which is defined as musty- earthy. Taste and odor control has become an important issue for drinking water ...

  9. Composition and properties of the actinomycete flora in a ferralitic tropical soil (oxisol)-sugar cane ecological system.

    Science.gov (United States)

    Fernandez, C; Szabó, I M

    1978-01-01

    Streptomycetes constituted about 46--48 per cent of the total aerobic microflora in the cultivated horizon of the studied ferralitic tropical soil below sugar cane plantation. This streptomycete fraction of the soil microbial community was composed of 13 (or more) species of Streptomyces (S. chromofuscus, S. chromogenus, S. diastatochromogenes, S. flavochromogenes, S. griseolus, S. nigrescens, S. phaeofaciens, S. sterilis, S. violaceus, Streptomyces sp. I--III), and Streptoverticillium (Sv. aspergilloides). None of these organisms did occur, with detectable frequency of occurrence, in the root surface region of sugar cane. Here, in the rhizoplane, we found a numerically small population of streptomycetes (about 5 per cent of the total bacterial flora), composed of two species (Streptomyces sp. IV and S. griseorubiginosus) which were, however, not detected in soil samples. PMID:664932

  10. An analysis of the sponge Acanthostrongylophora igens’ microbiome yields an actinomycete that produces the natural product manzamine A

    Directory of Open Access Journals (Sweden)

    Amanda Leigh Waters

    2014-10-01

    Full Text Available Sponges have generated significant interest as a source of bioactive and elaborate secondary metabolites that hold promise for the development of novel therapeutics for the control of an array of human diseases. However, research and development of marine natural products can often be hampered by the difficulty associated with obtaining a stable and sustainable production source. Herein we report the first successful characterization and utilization of the microbiome of a marine invertebrate to identify a sustainable production source for an important natural product scaffold. Through molecular-microbial community analysis, optimization of fermentation conditions and MALDI-MS imaging, we provide the first report of a sponge-associated bacterium (Micromonospora sp. that produces the manzamine class of antimalarials from the Indo-Pacific sponge Acanthostrongylophora ingens (Thiele, 1899 (Class Demospongiae, Order Haplosclerida, Family Petrosiidae. These findings suggest that a general strategy of analysis of the macroorganism’s microbiome could significantly transform the field of natural products drug discovery by gaining access to not only novel drug leads, but the potential for sustainable production sources and biosynthetic genes at the same time.

  11. Draft Genome Sequence of Marine Actinomycete Streptomyces sp. Strain NTK 937, Producer of the Benzoxazole Antibiotic Caboxamycin.

    Science.gov (United States)

    Olano, Carlos; Cano-Prieto, Carolina; Losada, Armando A; Bull, Alan T; Goodfellow, Michael; Fiedler, Hans-Peter; Méndez, Carmen; Salas, José A

    2014-07-03

    Streptomyces sp. strain NTK 937 is the producer of the benzoxazole antibiotic caboxamycin, which has been shown to exert inhibitory activity against Gram-positive bacteria, cytotoxic activity against several human tumor cell lines, and inhibition of the enzyme phosphodiesterase. In this genome announcement, we present a draft genome sequence of Streptomyces sp. NTK 937 in which we identified at least 35 putative secondary metabolite biosynthetic gene clusters.

  12. Characterization and phylogenetic analysis of novel polyene type antimicrobial metabolite producing actinomycetes from marine sediments:Bay of Bengal India

    Institute of Scientific and Technical Information of China (English)

    Valan; Arasu; M; Asha; KRT; Duraipandiyan; V; Ignacimuthu; S; Agastian; P

    2012-01-01

    Objective:To isolate and indentify the promising antimicrobial metabolite producing Streptomyces strains from marine sediment samples from Andraprudesh coast of India.Methods:Antagonistic aetinomycetes were isolated by starch casein agar medium and modified nutrient agar medium with 1%glucose used as a base for primary screening.Significant antimicrobial metabolite producing strains were selected and identified by using biochemical and 16S rDNA level.Minimum inhibitory concentrations of the organic extracts were done by using broth micro dilution method.Results:Among the 210 actinomyeetes,64.3%exhibited activity against Gram positive bacteria,48.5%showed activity towards Cram negative bacteria,38.8%exhibited both Cram positive and negative bacteria and 80.85%isolates revealed significant antifungal activity.However,five isolates AP-5,AP-18,AP-41 and AP-70 showed significant antimicrobial activity.The analysis of cell wall hydrolysates showed the presence of LL-diaminopimelic acid and glycine in all the isolates.Sequencing analysis indicated that the isolates shared 98.5%-99.8%sequence identity to the 16S rDNA gene sequences of the Streptomyces taxons.The antimicrobial substances were extracted using hexane and ethyl acetate from spent medium in which strains were cultivated at 30X for five days.The antimicrobial activity was assessed using broth micro dilution technique.Each of the culture extracts from these five strains showed a typical polyenelike property.The lowest minimum inhibitory concentrations of ethyl acetate extracts against Escherichia coli and Cumularia lunula were 67.5 and 125.0μg/mL,respectively.Conclusions:It can be concluded that hexane and ethyl acetate soluble extracellular products of novel isolates are effective against pathogenic bacteria and fungi.

  13. PREPHENATE DEHYDRATASE OF THE ACTINOMYCETE AMYCOLATOPSIS-METHANOLICA - PURIFICATION AND CHARACTERIZATION OF WILD-TYPE AND DEREGULATED MUTANT PROTEINS

    NARCIS (Netherlands)

    EUVERINK, GJW; WOLTERS, DJ; DIJKHUIZEN, L

    1995-01-01

    Prephenate dehydratase (PDT) is a key regulatory enzyme in L-phenylalanine biosynthesis in the Gram-positive bacterium Amycolatopsis methanolica. The PDT protein was purified to homogeneity (1957-fold) from wild-type cells with a final yield of 6.5%. It was characterized as a 150 kDa homotetrameric

  14. 1株湿地稀有放线菌的多相分类鉴定%Polyphasic Taxonomy of a Rare Marine Actinomycetes

    Institute of Scientific and Technical Information of China (English)

    唐树戈; 张柳; 于基成; 刘秋; 齐小辉

    2014-01-01

    Strain S402003 was isolated from marine sediment collected from Yalu River in Dandong, Liaoning Province. Based on the polyphasic studies, including the morphology, physiological and biochemical characteristics, chemotaxonomy and 16S rRNA gene sequence analysis, the results showed that strain S402003 had lipase activity and was capable to reduce nitrate, belongs to the mild salt-tolerant and basophilic bacteria. It was primarily identified as Brevibacterium linens with the similarity 98.834%.%从鸭绿江滨海湿地样品中分离得到1株稀有海洋放线菌S402003,通过形态观察、培养特征、生理生化特征、化学组分鉴定以及16S rRNA基因序列分析对其进行多相分类鉴定。结果表明:该菌株具有脂酶活性,能还原硝酸盐,属于轻度耐盐、嗜碱菌。该菌株属于Brevibacterium linens,相似性为98.834%。

  15. Whole-Genome Shotgun Sequencing of Rhodococcus erythropolis Strain P27, a Highly Radiation-Resistant Actinomycete from Antarctica

    Science.gov (United States)

    Gouvêa Taketani, Rodrigo; Domingues Zucchi, Tiago; Soares de Melo, Itamar

    2013-01-01

    Here, we report the draft genome sequence of radiation-resistant Rhodococcus erythropolis strain P27, isolated from leaves of Deschampsia antarctica Desv. (Poaceae) in the Admiralty Bay area, Antarctica. PMID:24072865

  16. Isolation and antimicrobial activities of actinomycetes from vermicompost%蚯蚓粪中放线菌分离及其抗菌活性研究

    Institute of Scientific and Technical Information of China (English)

    汪学军; 闫双林; 闵长莉; 杨艳

    2015-01-01

    采用平板涂布法分离蚯蚓粪中的放线菌,采用琼脂块法初步研究了蚯蚓粪中放线菌的抗菌活性,通过形态观察、生理生化特性和16S rDNA基因序列分析对抗菌活性较强的菌株进行鉴定.实验结果表明,从蚯蚓粪中共分离到放线菌26株,其中16株对指示菌株有抗菌活性,占分离放线菌总数的61.54%;菌株QYF12,QYF22对藤黄八叠球菌Micrococcus luteus具有较强的拮抗作用,其抑菌圈直径分别为27,31 mm;菌株QYF26对枯草芽孢杆菌的抗菌活性较强,抑菌圈直径为21 mm.菌种鉴定结果表明,菌株QYF12为教酒链霉菌Streptomyces chartreusis,QYF22为吸水链霉菌奥萨霉素亚种S.ossamyceticus,QYF26为灭癌素链霉菌S.gancidicus,该研究为下一步分离抗菌物质用于生物防治提供了理论依据.

  17. Determination of the Residual Anthracene Concentration in Cultures of Haloalkalitolerant Actinomycetes by Excitation Fluorescence, Emission Fluorescence, and Synchronous Fluorescence: Comparative Study

    OpenAIRE

    Reyna del Carmen Lara-Severino; Miguel Ángel Camacho-López; Jessica Marlene García-Macedo; Gómez-Oliván, Leobardo M.; Sandoval-Trujillo, Ángel H.; Keila Isaac-Olive; Ninfa Ramírez-Durán

    2016-01-01

    Polycyclic aromatic hydrocarbons (PAHs) are compounds that can be quantified by fluorescence due to their high quantum yield. Haloalkalitolerant bacteria tolerate wide concentration ranges of NaCl and pH. They are potentially useful in the PAHs bioremediation of saline environments. However, it is known that salinity of the sample affects fluorescence signal regardless of the method. The objective of this work was to carry out a comparative study based on the sensitivity, linearity, and detec...

  18. Bacterial Type I Glutamine Synthetase of the Rifamycin SV Producing Actinomycete, Amycolatopsis mediterranei U32, is the Only Enzyme Responsible for Glutamine Synthesis under Physiological Conditions

    Institute of Scientific and Technical Information of China (English)

    Wen-Tao PENG; Jin WANG; Ting WU; Jian-Qiang HUANG; Jui-Shen CHIAO; Guo-Ping ZHAO

    2006-01-01

    The structural gene for glutamine synthetase, glnA, from Amycolatopsis mediterranei U32 was cloned via screening a genomic library using the analog gene from Streptomyces coelicolor. The clone was functionally verified by complementing for glutamine requirement of an Escherichia coli glnA null mutant under the control of a lac promoter. Sequence analysis showed an open reading frame encoding a protein of466 amino acid residues. The deduced amino acid sequence bears significant homologies to other bacterial type I glutamine synthetases, specifically, 71% and 72% identical to the enzymes of S. coelicolor and Mycobacterium tuberculosis, respectively. Disruption of this glnA gene in A. mediterranei U32 led to glutamine auxotrophy with no detectable glutamine synthetase activity in vivo. In contrast, the cloned glnA+ gene can complement for both phenotypes in trans. It thus suggested that in A. mediterranei U32, the glnA gene encoding glutamine synthetase is uniquely responsible for in vivo glutamine synthesis under our laboratory defined physiological conditions.

  19. Comparative In Vitro Activities of XRP 2868, Pristinamycin, Quinupristin-Dalfopristin, Vancomycin, Daptomycin, Linezolid, Clarithromycin, Telithromycin, Clindamycin, and Ampicillin against Anaerobic Gram-Positive Species, Actinomycetes, and Lactobacilli

    OpenAIRE

    Goldstein, Ellie J. C.; Citron, Diane M.; Merriam, C. Vreni; Warren, Yumi A.; Tyrrell, Kerin L.; Fernandez, Helen T.; Bryskier, Andre

    2005-01-01

    A comparative study of the in vitro activities of XRP 2868, a new oral streptogramin, against 266 anaerobic gram-positive clinical isolates using the agar dilution method showed that the XRP 2868 MICs for 95% (254 of 266) of isolates were ≤0.5 μg/ml. XRP 2868 MICs for only two strains, one being Clostridium clostridioforme (MIC, 16 μg/ml) and the other being Clostridium difficile (MIC, 32 μg/ml), were >2 μg/ml. Depending on its pharmacokinetics and pharmacodynamics, XRP 2868 has potential for...

  20. 内生拮抗放线菌防治番茄灰霉病的研究%Study on Control Tomato Botrytis cinerea by Antagonistic Endophytic Actinomycetes

    Institute of Scientific and Technical Information of China (English)

    辛春艳; 张丽萍; 谢莉; 程辉彩; 张根伟; 李书生

    2009-01-01

    从番茄植物组织内分离到一株对番茄灰霉病菌(Botrytis cinerea)有拮抗作用的放线菌株No.37,此菌株产生的抗菌物质能显著抑制番茄灰霉病菌的菌丝生长和孢子萌发,对盆栽番茄幼苗的预防保护作用和治疗作用分别达到89.7%和80.3%,10倍稀释液的田间防治效果达到84.1%.

  1. 一株高效抑藻放线菌的分离筛选及鉴定%Isolation and Identification of a High Algicidal Actinomycete

    Institute of Scientific and Technical Information of China (English)

    郑小伟; 黄丽萍; 张帮周; 张金龙; 杨小茹; 郑天凌

    2012-01-01

    521 strains were isolated from mangrove sediments in the Yunxiao Mangrove National Nature Reserve, Fujian, China. 27 algicidal isolates were screened based on the analysis of fluorescence intensity of Phaeocystis globosa. The strain named O3-26, which showed the highest algcidal activity (96. 71%) against P. globosa among these 27 algicidal isolates, was studied in this article. The test of algicidal spectrum illustrated O3-26 showing a algicidal characteristic of algae species specificity, with high algicidal effects on Dunaliella salina and Chlorella autotrophica , no algicidal effects on Phaeodactylum tricornutum and Skeletonema costatum. Observed by scanning electron microscope, O3-26 has spiral sporothrix and barbed spores. This strain can grow well in most of the medium in this article,and produce soluble pigment in nutrient agar. The physiological tests demonstrated that O3-26 owns a wide range of carbon sources,but it can not be grown on raffinose medium as sole carbon source. On the basis of 16S rRNA gene sequence similarity,the strain O3-26 was shown to be related most closely to Streptomyces gancidicus 154152 (99%). Although some differences from S. gancidicus were tested from physiological and biochemical experiments, 03-26 was still indentificated as S. gancidicus by comparison on morphological,physiological characteristics and phylogenetic analysis.%从福建云霄国家红树林自然保护区滩涂沉积物样品中,共分离获得521株纯培养物.通过检测球形棕囊藻(Phaeocystis globosa)荧光强度计算抑藻率,从521株菌中筛选到27株具有抑藻活性的菌株.在27株抑藻菌中,菌株O3-26对球形棕囊藻具有最高的抑藻率(高达96.71%).菌株O3-26的抑藻谱实验显示,该菌株抑藻活性表现出一定的种属特异性,对硅藻门(Bacillariophyta)的三角褐指藻(Phaeodactylum tricornutum)和中肋骨条藻(Skeletonema costatum)2株测试藻株没有抑制作用,而对绿藻门(Chlorophyta)盐生杜氏藻(Dunaliella salina)和自养小球藻(Chlorella autotrophica)2株藻株具有较强抑藻作用.扫描电镜观察显示,该菌株孢子丝直至螺旋状且孢子表面带刺.生理生化实验显示,该菌株在所得到的大多数培养基上生长良好,在营养琼脂培养基中可以产生水溶性色素;不能在棉子糖作为唯一碳源的培养基上生长.16S rRNA基因相似性分析表明,菌株O3-26属于链霉菌属(Streptomyces),并与灭癌素链霉菌(Streptomyces gancidicus) 15412菌株具有最高的同源性(99%).生理生化实验表明,二者之间生理特征存在一定差异.综合形态特征、生理特征以及系统发育分析的结果,鉴定该菌株为灭癌素链霉菌.

  2. Salininema proteolyticum gen. nov., sp. nov., a halophilic rare actinomycete isolated from wetland soil, and emended description of the family Glycomycetaceae.

    Science.gov (United States)

    Nikou, Mahdi Moshtaghi; Ramezani, Mohaddaseh; Amoozegar, Mohammad Ali; Rasouli, Mehrnoush; Fazeli, Seyed Abolhassan Shahzadeh; Schumann, Peter; de la Haba, Rafael R; Ventosa, Antonio

    2015-10-01

    A Gram-stain-positive actinobacterial strain, Miq-4T, was isolated from soil around Meighan wetland in the centre of Iran. Strain Miq-4T was strictly aerobic, catalase- and oxidase-positive. The isolate grew in the presence of 3–15 % (w/v) NaCl, at 20–40 °C and pH 6.0–11.0. The optimum NaCl, temperature and pH for growth were 7.0 %, 30 °C and 7.0–8.5, respectively. The cell wall of strain Miq-4T contained meso-diaminopimelic acid as the diamino acid and glucose and ribose as the whole-cell sugars. The polar lipid pattern consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. Strain Miq-4T synthesized cellular fatty acids of anteiso- and iso-branched types, including anteiso-C17 : 0, anteiso- C15 : 0 and iso-C16 : 0, and the major respiratory quinone was MK-9(H4). The G+C content of the genomic DNA was 68.2 mol%. Phylogenetic analysis based on 16S rRNA gene sequences and characteristic patterns of 16S rRNA gene signature nucleotides revealed that strain Miq-4T belongs to the family Glycomycetaceae and showed the closest phylogenetic similarity with Haloglycomyces albus YIM 92370T (94.1 % 16S rRNA gene sequence similarity). On the basis of phylogenetic analysis and phenotypic and chemotaxonomic characteristics, strain Miq-4T represents a novel species of a new genus in the family Glycomycetaceae, for which the name Salininema proteoliyticum gen. nov., sp. nov. is proposed. The type strain of the type species is Miq-4T ( = IBRC-M 10908T = LMG 28391T). An emended description of the family Glycomycetaceae is also proposed in order to include features of the new genus. PMID:26219545

  3. Identification of ATP-Dependent Phosphofructokinase as a Regulatory Step in the Glycolytic Pathway of the Actinomycete Streptomyces coelicolor A3(2)

    NARCIS (Netherlands)

    Alves, A.M.C.R.; Euverink, G.J.W.; Bibb, M.J.; Dijkhuizen, L.

    1997-01-01

    The ATP-dependent phosphofructokinase (ATP-PFK) of Streptomyces coelicolor A3(2) was purified to homogeneity (1,600-fold) and characterized (110 kDa, with a single type of subunit of 40 kDa); it is allosterically inhibited by phosphoenolpyruvate. Cloning of the pfk gene of S. coelicolor A3(2) and an

  4. Targeted genome editing in the rare actinomycete Actinoplanes sp. SE50/110 by using the CRISPR/Cas9 System.

    Science.gov (United States)

    Wolf, Timo; Gren, Tetiana; Thieme, Eric; Wibberg, Daniel; Zemke, Till; Pühler, Alfred; Kalinowski, Jörn

    2016-08-10

    The application of genome editing technologies, like CRISPR/Cas9 for industrially relevant microorganisms, is becoming increasingly important. Compared to other methods of genetic engineering the decisive factor is that CRISPR/Cas9 is relatively easy to apply and thus time and effort can be significantly reduced in organisms, which are otherwise genetically difficult to access. Because of its many advantages and opportunities, we adopted the CRISPR/Cas9 technology for Actinoplanes sp. SE50/110, the producer of the diabetes type II drug acarbose. The functionality of genome editing was successfully shown by the scarless and antibiotic marker-free deletion of the gene encoding the tyrosinase MelC, which catalyzes the formation of the dark pigment eumelanin in the wild type strain. The generated ΔmelC2 mutant of Actinoplanes sp. SE50/110 no longer produces this pigment and therefore the supernatant does not darken. Furthermore, it was shown that the plasmid containing the gene for the Cas9 protein was removed by increasing the temperature due to its temperature-sensitive replication. The precision of the intended mutation was proven and possible off-target effects caused by the genome editing system were ruled out by genome sequencing of several mutants. PMID:27262504

  5. Information for Authors Asian Pacific Journal of Tropical Biomedcine GENERAL

    Institute of Scientific and Technical Information of China (English)

    2013-01-01

    <正>Asian Pacific Journal of Tropica)Biomedicine is sponsored by Asian Pacific Tropical Medicine Press and aims to set up an academic communicating plaflorm for Chinese and scientists all over the world on tropical biomedicine

  6. Ancistrotanzanine C and related 5,1 '- and 7,3 '-coupled naphthylisoquinoline alkaloids from Ancistrocladus tanzaniensis

    DEFF Research Database (Denmark)

    Bringmann, G.; Dreyer, M.; Faber, J.H.;

    2004-01-01

    from this newly discovered plant species. The structural elucidation was achieved by chemical, spectroscopic, and chiroptical methods. The biological activities of the alkaloids against the pathogens causing malaria tropica, leishmaniasis, Chagas' disease, and African sleeping sickness were evaluated....

  7. First Report on Natural Infection of Phlebotomus sergenti with Leishmania Promastigotes in the Cutaneous Leishmaniasis Focus in Southeastern Tunisia

    OpenAIRE

    Tabbabi, Ahmed; Bousslimi, Nadia; Rhim, Adel; Aoun, Karim; Bouratbine, Aïda

    2011-01-01

    During September 2010, 133 female sand flies were caught inside houses of patients with cutaneous leishmaniasis in the focus for this disease in southeastern Tunisia and subsequently dissected. One specimen was positive for Leishmania protozoa. This sand fly species was identified as Phlebotomus sergenti, and the parasite was identified as L. tropica. This is the first report of P. sergenti involvement in transmission of L. tropica in Tunisia.

  8. Detection of linear and circular plasmids among actinomycetes isolated from acid and alkaline soils%酸性和碱性土壤新分离的放线菌中线型和环型质粒的检测

    Institute of Scientific and Technical Information of China (English)

    代玉梅; 周敏; 覃重军

    2008-01-01

    从湖南、云南采集的19份酸性土壤样品分离到50株放线菌,在pH4.5和pH7.0的培养基上都能生长.从新疆、青海、云南的14份碱性土壤样品中分离到38株放线菌,在pH10.0和pH7.0的培养基上均能生长.因此,这些菌株属于中度嗜酸或中度嗜碱放线菌.利用脉冲电泳技术和普通凝胶电泳在其中12株放线菌中检测到线型质粒,其中3株放线菌中检测到环型质粒.这是首次在中度嗜酸和中度嗜碱的放线菌中报道线型和环型质粒.

  9. Screening of antibiofilm activity from actinomycete strains against Staphylococcus epidermidis%抑制表皮葡萄球菌生物膜形成的放线菌筛选及其活性研究

    Institute of Scientific and Technical Information of China (English)

    谢婷婷; 陈伟

    2015-01-01

    为筛选对表皮葡萄球菌(S.epidermidis)生物膜形成具有抑制作用的放线菌,本研究采用微量板半定量法检测了185株源自新疆南疆地区土壤中的放线菌对表皮葡萄球菌生物膜形成能力的影响.结果表明3株放线菌(TRM46200、41337和46814)的发酵液在不影响表皮葡萄球菌生长的条件下抑制其生物膜形成,并且主要在表皮葡萄球菌生物膜形成的初始黏附阶段发挥作用.本研究为开发利用新疆放线菌资源,以及寻找以抑制生物膜形成为靶点的新型抗生素提供实验依据.

  10. Isolation and cultivation of actinomycetes causing T&Os and detection of its metabolized T&O compounds%致嗅放线菌的分离培养及其致嗅代谢物的测定

    Institute of Scientific and Technical Information of China (English)

    李学艳; 沈吉敏; 陈忠林; 马军

    2008-01-01

    为研究放线菌代谢致嗅物质的影响因素,对典型的致嗅放线菌进行分离和培养.分别采用液体培养基和固体培养基对放线菌进行培养和分析,同时利用气相色谱质联联用仪(GC-MS)对培养过程代谢嗅味物质进行定性和定量分析.经过分离和鉴定,能代谢嗅味物质二甲基异莰醇(MIB)和土臭素(geosmin)的典型菌种是淡黄链霉菌(又名放线菌5460),发现培养方式、培养基组分、培养基中溶解氧、培养温度等都会影响放线菌的代谢嗅味物质的种类和质量浓度.目标菌在液体培养和平板培养时均产生嗅味物质,但种类有所不同,在液体培养时只产生geosmin,而在平板培养则检测出MIB和geosmin.GC-MS谱图分析发现有其他嗅味物质如苯甲醇和2-甲基莰烷,它们很可能是水体另外臭味物质的产生源.

  11. Identification and Characterization of glnA Promoter and its Corresponding Trans-regulatory Protein GlnR in the Rifamycin SV Producing Actinomycete,Amycolatopsis mediterranei U32

    Institute of Scientific and Technical Information of China (English)

    Hao YU; Wen-Tao PENG; Yang LIU; Ting WU; Yu-Feng YAO; Ming-Xue CUI; Wei-Hong JIANG; Guo-Ping ZHAO

    2006-01-01

    The genetic requirements for the transcription of glnA, encoding the major glutamine synthetase in a rifamycin SV-producing Amycolatopsis mediterranei strain, U32, were investigated. Primer extension experiments showed that the promoter of U32 glnA (pglnA) was likely to have two transcription initiation sites: P1 and P2, located 157 and 45 nucleotides (nt) upstream of the translational start codon, respectively. Gel mobility shift and DNase Ⅰ footprinting analyses revealed a 30 bp cis-element located at 45 to 75 nt downstream of P1, or 38 to 68 nt upstream of P2. The sequence of the cis-element displayed high similarity to the corresponding regions of pglnA from Streptomyces coelicolor and S. roseosporus. With xylE as a reporter gene, the expression levels of U32 pglnA and its deletion derivatives under different nitrogen-source conditions were analyzed by detecting the catechol dioxygenase activities in S. lividans TK54, S. coelicolor J508 and S. coelicolor FS10 (glnR mutant). These in vivo studies showed that the activation of U32 pglnA in S. coelicolor required GlnR, and its binding to the U32 pglnA was further confirmed by the gel mobility shift assay. Cloning and heterologous expression of the U32 glnR allowed us to detect the in vitro interaction between the U32 GlnR and the corresponding pglnA cis-element. Further evidence shown by in vivo glnR inactivation and complementation indicated that GlnR is essential for the active transcription of glnA in U32.

  12. Study on Selective Isolation and Antibiotic Activity of Rare Actinomycetes from Soil%土壤稀有放线菌的选择性分离及其抗菌活性研究

    Institute of Scientific and Technical Information of China (English)

    黄路枝; 胡兆农; 郭正彦; 吴文君

    2007-01-01

    在优化土壤稀有放线菌选择性分离方法的基础上,对从安徽、浙江、山东、陕西等地采集的31份土样中的稀有放线菌进行了选择性分离.结果表明:以改进的HV培养基为分离培养基,将土壤样品稀释100倍,添加2×10-5 g/mL重铬酸钾+2×10-5 g/mL萘啶酮酸+1×10-5 g/mL卡那霉素作为抑制剂分离效果最好.以常见植物病原真菌和细菌为指示菌,从分离的417株放线菌中筛选出H32、H75、H223、H227、H238等5株可代谢抗菌活性物质的菌株.离体条件下,5株放线菌菌株发酵液对小麦根腐病菌Bipolaris sorokiniana、玉米大斑病菌Exserohilum turcicum、烟草赤星病菌Alternaria alternate的菌丝生长和孢子萌发均有强烈的抑制作用,其中H223和H238菌株发酵液对病原真菌菌丝生长的抑制中浓度(EC50)值均小于10 mL/L;H32菌株发酵液对小麦根腐病菌、玉米大斑病菌、烟草赤星病菌孢子萌发的EC50值分别为25.5、28.9和29.9 mL/L.5株放线菌发酵液对枯草芽孢杆菌、大肠杆菌、金黄色葡萄球菌抑制作用显著,其中H223菌株发酵液抑制作用最强,抑菌圈达30 mm以上.盆栽实验结果表明,5株放线菌发酵液对小麦白粉病的保护效果为73.45%~82.35%,治疗效果为67.74%~70.80%.

  13. 土壤拮抗放线菌S-5210-6的筛选及其初步分类鉴定%Selection and indentification of antagonistic actinomycetes S-5210-6 from siol

    Institute of Scientific and Technical Information of China (English)

    疏秀林; 安德荣; 张勤福; 马驰

    2004-01-01

    从秦岭山区不同海拔、不同植被类型土壤中分离出750株放线菌,对其进行皿内琼脂平板、放线菌发酵液及拮抗菌单胞菌的拮抗性筛选.结果表明,S-5210-6号菌株对稻瘟病菌(Pyricularia grisea)、小麦赤霉病菌(Fusarium graminearum)、小麦根腐病菌(Bipolaris sorokiniana)、玉米大斑病菌(Exserohilum turcicum leonard)、黄瓜枯萎病菌(Fusarium oxysporum f.sp.cucumerium)、番茄枯萎病菌(Fusarium oxysporum f.sp.lycopersici)、番茄早疫病菌(Altermaria solani)、小麦白粉病菌(Erysiphe graminis)8种供试病原真菌具有强烈的拮抗和溶菌作用,根据其形态特征、培养特征、生理生化特征及细胞壁化学成分分析,确定其归属于链霉菌属(Streptomyces).

  14. 一株拮抗立枯丝核菌的放线菌筛选、鉴定及生理特性%Screening, identification and physiological characteristics of an actinomycete strain against Rhizoctonia solani

    Institute of Scientific and Technical Information of China (English)

    张靖宜; 张倩茹; 项文化; 魏树和; 牟文燕

    2014-01-01

    通过对峙实验,从采集自黄渤海海域的双齿围沙蚕(Perinereis aibuhitensis)中分离到一株内生放线菌SCF-18,并对其抑菌活性进行分析.SCF-18对立枯丝核菌(Rhizoctonia solani)和小麦根腐病菌(Bipolaris sorokiniana)都具有拮抗作用,且对立枯丝核菌生长的拮抗效果最为明显,生长抑制率为89.78%.抑菌试验结果表明:菌株SCF-18发酵滤液可以抑制立枯丝核菌丝的生长,发酵液浓度越高,抑制力越强;当发酵液浓度达到50%时,对两种病原菌的抑制率分别为89.78%和80.26%.菌株SCF-18生长特性试验结果表明:菌株SCF-18生长最适温度为30℃,最适pH值为7;放线菌SCF-18耐盐度可达5%.根据形态特征、培养特征、生理生化特性和16S rDNA序列分析,将放线菌SCF-18初步鉴定为淡紫灰链霉菌(Streptomyces lavendulae).本研究发现,SCF-18菌株是防治立枯丝核菌等病原菌的潜在优良生防菌株,具有潜在的开发应用价值.

  15. Bioactive metabolite and taxonomic identification of actinomycete strain HCCB01128%放线菌HCCB01128的活性代谢产物及菌株鉴定

    Institute of Scientific and Technical Information of China (English)

    符浩; 杨志钧; 金文翔; 陈代杰

    2012-01-01

    Objective To study the metabolites of stain HCCB01128. Methods The strain HCCB01128 was preliminarily identified to species level by phylogenetic analysis combined with morphological characteristics, physiological and biochemical characteristics. The metabolites from the culture broth of HCCB01128 were extracted by macroporous resin and purified by HPLC. The structure of compound 1128-1 was determined by 'H and 13C NMR analysis. The antitumor activities of the crude extract and compound 1128-1 were detected by MTT method. Results and Conclusion The 16S rRNA of strain HCCB01128 shared 99.51% similarity to Streptomyces diastatochromogenes. Compound 1128 showed apparent activities against tumor cells, and was identified as Aurodox. To our knowledge, this is firstly reported on isolation of Aurodox from Streptomyces diastatochromogenes.%目的 研究放线菌HCCB01128产生的抗肿瘤活性次级代谢产物.方法 利用系统发育、形态特征和生理生化特性分析的方法对菌株HCCB01128进行初步鉴定.大孔吸附树脂吸附HCCB01128发酵液,反相色谱对菌株次级代谢产物进行分离和纯化.通过质谱、核磁共振氢谱(1H)、碳谱(13C)等分析对化合物1128-1进行结构鉴定.MTT法检测HCCB01128代谢粗提物的肿瘤细胞毒性.结果与结论 菌株HCCB01128的16S rRNA与淀粉酶产色链霉菌Streptomyces diastatochromogenes的16S rRNA具有99.51%的相似性.其发酵初提物具有较强的抗肿瘤活性;经纯化鉴定其中一种活性化合物为Aurodox.本文首次报道从淀粉酶产色链霉菌中分离到Aurodox.

  16. Isolation and phylogenetic analysis of one actinomycete strain YIM 90022 exhibiting anticancer activity%具抗肿瘤活性放线菌菌株YIM 90022的分离和系统发育分析

    Institute of Scientific and Technical Information of China (English)

    陈义光; 李文均; 崔晓龙; 姜成林; 徐丽华

    2006-01-01

    从青海盐碱土壤样品中分离到一株兼性嗜碱放线菌YIM 90022,该菌株的发酵产物具有很强的体外抗胃癌、肺癌、乳腺癌、皮肤癌、肾癌和子宫癌肿瘤细胞株活性.基于16S rRNA基因序列的系统发育分析表明,菌株YIM90022属于拟诺卡氏属(Nocardiopsis)的成员,与该属的4个有效发表种N.exhalans DSM 44407T,N.prasina DSM 43845T,N.metallicus DSM 44598T和N.listeri DSM 40297T系统发育关系最密切,与其分别以98.8%,98.5%,98.4%和97.8%的16S rRNA基因核苷酸序列相似性聚为一簇.但菌株YIM 90022不与这4个有效种中任何一个单独相聚,形成了一个独立亚分枝.结合形态特征、生理生化特性、细胞化学分类特征,以及rep-PCR基因指纹分析等方面的研究结果,菌株YIM 90022可能为拟诺卡氏菌属的一个潜在新种.菌株YIM 90022在大多数培养基上生长良好,气生菌丝和基内菌丝丰富,在酵母膏麦芽膏琼脂、燕麦片琼脂等培养基中产生可溶性色素.生长pH范围6.0~12.0,最适pH 8.5;能在含0~15%NaCl(W/V)的培养基上生长.

  17. 堆肥放线菌DF02分离及对番茄灰霉病生防作用%Isolation of Actinomycete DF02 from Composting and Its Application in Biological Control of Botrytis cinerea

    Institute of Scientific and Technical Information of China (English)

    汪学军; 闵长莉; 杨艳

    2015-01-01

    目的:从堆肥样品中分离具有生防作用的放线菌,并对其进行菌种鉴定及对番茄灰霉病菌(Botrytis cinerea)的盆栽防治效果进行研究.方法:采用稀释涂布法分离堆肥样品中的放线菌,采用混菌法和牛津杯法研究堆肥样品中放线菌的抑菌活性,根据形态观察、生理生化特性和16S rDNA分析对抗菌活性较强的菌株进行菌种鉴定,并研究该菌株的盆栽防治效果.结果:从堆肥样品中共分离到放线菌31株,有3株放线菌对指示菌株具有抑制作用;其中放线菌DF02菌株对供试菌中的5种植物病原真菌均有拮抗作用,且对番茄灰霉病菌的抑制作用较强;盆栽试验结果显示,DF02菌株发酵液上清对番茄灰霉病的保护效果和治疗效果分别是58.47%和53.83%;分类地位研究表明,DF02菌株与Streptomyces neopeptinius最接近,初步将其鉴定为Streptomyces neopeptinius.结论:DF02是一株具有研究开发潜力的生防放线菌菌株,本研究结果为番茄灰霉病的生物防治提供了实验依据.

  18. Isolation and Identification of One Actinomycete Strain Exhibiting Antifungal Activity against Lasiodiplodia theobromae%一株拮抗可可球二孢菌放线菌的分离及鉴定

    Institute of Scientific and Technical Information of China (English)

    卞光凯; 缪倩; 秦盛; 陈永强; 曹成亮; 王祺琦; 陈凤美; 蒋继宏

    2011-01-01

    目的:筛选具有拮抗植物病原真菌可可球二孢菌活性的放线菌.方法:选择高氏一号培养基分离放线菌,以可可球二孢菌为指示菌进行抑菌活性筛选,通过形态学特征、生理生化特征、培养特征以及16S rRNA基因序列分析等研究对筛选得到的高活性菌株进行菌种鉴定.结果:从南方红豆杉根际土壤中筛选得到一株高活性菌株KLBMP 2284,16S rRNA基因序列比对结果显示其与弗吉尼亚链霉菌(Streptomyces virginiae)相似性98.963%,发酵液稀释300倍后抑制率为41.64%.结论:KLBMP 2284为弗吉尼亚链霉菌的一个菌株.

  19. Diversity of actinomycetes associated with root-knot nematode and their potential for nematode control%根结线虫放线菌及其生物防治活性研究

    Institute of Scientific and Technical Information of China (English)

    罗红丽; 孙漫红; 谢建平; 刘志恒; 黄英

    2006-01-01

    从感染植物根部的根结线虫卵和雌虫中,分离得到放线菌20株.形态、细胞壁氨基酸组分和16S rRNA基因序列分析表明:分离菌株分属于链霉菌属(Streptomyces)、诺卡氏菌属(Nocardia)和假诺卡氏菌属(Pseudonocardia),其中链霉菌占80.0%.分离菌株对根结线虫Meloidogyne spp.卵的平均寄生率、卵的孵化率、幼虫死亡率分别为54.1%、40.4%和26.2%.根据体外测试的结果,选择具有高致病力的3株链霉菌(1-17,2-6,9-47)和1株诺卡氏菌(5-1)进行温室番茄防效测试,其生防效率分别为31.4%、37.7%、56.4%和42.4%.

  20. Pseudascarophis brasiliensis sp. nov. (Nematoda: Cystidicolidae parasitic in the Bermuda chub Kyphosus sectatrix (Perciformes: Kyphosidae from southeastern Brazil

    Directory of Open Access Journals (Sweden)

    Felipe Bisaggio Pereira

    2013-06-01

    Full Text Available A new species of Pseudascarophis (Nematoda: Cystidicolidae found in the stomach of Kyphosus sectatrix (Linnaeus (Kyphosidae, off Rio de Janeiro, Brazil, is described. The new species can be differentiated from the other congeners by the presence of lateral alae, distinct but inconspicuous cephalic papillae at the anterior end, three pairs of precloacal and one pair of adcloacal papillae in males, egg morphology and morphometry of glandular oesophagus and spicules. Pseudascarophis tropica is transferred to Ascarophis as Ascarophis tropica (Solov'eva comb. n. due to its ambiguous diagnosis.

  1. ACTINOMYCES NAESLUNDII IN PATIENTS WITH HEMATOLOGICAL MALIGNANCIES

    OpenAIRE

    S. H. Rasa J. V Yusefi; F. Agha-Khani; M. Ghazanfari; R. Tohidi; F. A. Nakhjavani; F. Daee-Ghazvini; Mobedi, I

    2006-01-01

    Mycotic infections have been commonly encountered in patients with hematological malignancies. The current study seeks the prevalence of actinomycete infection in patients suffering from blood cells malignancies. A hundred and fifty patients with some kinds of blood cells dyscrasia who underwent the bone marrow aspiration were recruited. In addition to the diagnostic work up, samples were examined for the presence of actinomycete infections. Twenty one samples were positive for actinomycete i...

  2. Microhabitats within Venomous Cone Snails Contain Diverse Actinobacteria▿ †

    OpenAIRE

    Peraud, Olivier; Biggs, Jason S.; Hughen, Ronald W.; Alan R. Light; Concepcion, Gisela P.; Baldomero M. Olivera; Schmidt, Eric W.

    2009-01-01

    Actinomycetes can be symbionts in diverse organisms, including both plants and animals. Some actinomycetes benefit their host by producing small molecule secondary metabolites; the resulting symbioses are often developmentally complex. Actinomycetes associated with three cone snails were studied. Cone snails are venomous tropical marine gastropods which have been extensively examined because of their production of peptide-based neurological toxins, but no microbiological studies have been rep...

  3. Phylogenetic position of Leishmania isolates from Khyber Pakhtunkhwa province of Pakistan.

    Science.gov (United States)

    Khan, Nazma Habib; Messenger, Louisa A; Wahid, Sobia; Sutherland, Colin J

    2016-08-01

    Several species of the genus Leishmania are causative agents of cutaneous leishmaniasis in Pakistan. This study aimed to determine phylogenetic placement of Leishmania species causing cutaneous leishmaniasis in Khyber Pakhtunkhwa province, Pakistan (34 Leishmania tropica, 3 Leishmania infantum), in-relation to species from other geographical areas using gene sequences encoding cytochrome b (cytb) and internal transcribed spacer 2 (its2). Based on cytochrome b sequence analysis, L. tropica strains from Pakistan and other geographical regions were differentiated into two genotype groups, A and B. Within the province, five distinct L. tropica genotypes were recognized; two in group A, three in group B. Two L. infantum isolates from the province were closely associated with both Afro-Eurasian and American species of the Leishmania donovani complex, including Leishmania chagasi, L. infantum and L. donovani from Sudan and Ethiopia; while a third L. infantum isolate could not be differentiated from visceralizing Kenyan and Indian L. donovani. We observed apposite phylogenetic placement of CL-causing L. tropica and L. infantum from Khyber Pakhtunkhwa. Affinities ascribed to Leishmania spp. From the region are valuable in tracing potential importation of leishmaniasis. PMID:27233810

  4. Dicty_cDB: Contig-U16263-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available 0 2e-04 1 ( AT007393 ) Paragonimus westermani 3N cDNA, clone:Pw0673. 44 4e-04 2 ( AL869145 ) Xenopus tropica...aculatus mRNA, GBcontig10253. 60 2e-04 1 ( DC440294 ) Gryllus bimaculatus mRNA, clone:GB00364-20_H07, 5... 6

  5. A study on the zooplankton of the Burhabalanga Estuary, Orissa Coast

    Digital Repository Service at National Institute of Oceanography (India)

    Ramaiah, Neelam; Chatterji, A; Madhupratap, M.

    the stations during October 1991 as a result of a mysid swarm. Copepoda was generally the most abundant group. The copepods Pseudodiaptomus bowmani, P. sewelli, Acartia tropica and A. bowmani are recorded for the first time from the east coast of India....

  6. First molecular epidemiological study of cutaneous leishmaniasis in Libya.

    Directory of Open Access Journals (Sweden)

    Ahmad Amro

    Full Text Available BACKGROUND: Cutaneous leishmaniasis (CL is a major public health problem in Libya. The objective of this study was to investigate, for the first time, epidemiological features of CL outbreaks in Libya including molecular identification of parasites, the geographical distribution of cases and possible scenarios of parasite transmission. METHODOLOGY/PRINCIPAL FINDINGS: We studied 450 patients that came from 49 areas distributed in 12 districts in north-west Libya. The patients' ages ranged from 9 months to 87 years (median age 25 years; 54% of the cases were males. Skin scrapings spotted on glass slides were collected for molecular identification of causative agent. The ribosomal internal transcribed spacer 1 (ITS1 was amplified and subsequently characterized by restriction fragment length polymorphism (RFLP analysis. In total, 195 samples were successfully identified of which 148 (75.9% were Leishmania major, and 47 (24.1% Leishmania tropica. CL cases infected with L. major were found in all CL areas whereas L. tropica cases came mainly from Al Jabal Al Gharbi (46.4%, Misrata (17.8% and Tarhuna districts (10.7%. A trend of seasonality was noticed for the infections with L. major which showed a clear peak between November and January, but was less pronounced for infections by L. tropica. CONCLUSION: The first molecular study on CL in Libya revealed that the disease is caused by L. major and L. tropica and the epidemiological patterns in the different foci were the same as in other Mediterranean foci of CL.

  7. Imported malaria in children: A national surveillance in the Netherlands and a review of European studies

    NARCIS (Netherlands)

    G.J.A. Driessen (Gertjan); R. Pereira (Rob Rodrigues); B.J. Brabin (Bernard John); N.G. Hartwig (Nico)

    2008-01-01

    textabstractBackground: Falciparum malaria or malaria tropica is one of the leading causes of childhood mortality worldwide. Malaria-related deaths occur mainly in sub-Saharan Africa, where an estimated 365 million clinical cases of Plasmodium falciparum malaria occur each year. In Europe, imported

  8. A Powerful New Insecticide for the Organic Grower

    OpenAIRE

    Kuhar, Thomas Patrick, 1969-; Speese, John

    2009-01-01

    Entrust contains the active ingredient spinosad, which is in the naturalyte class of chemistry. Spinosad is a fermentation product produced by the soil-dwelling actinomycete Saccharopolyspora spinosa. Actinomycetes are microorganisms that have characteristics of both bacteria and fungi. This publication reviews the uses for this insecticide.

  9. Unlocking Streptomyces spp. for use as sustainable industrial production platforms by morphological engineering

    NARCIS (Netherlands)

    Wezel, G.P. van; Krabben, P.; Traag, B.A.; Keijser, B.J.F.; Kerste, R.; Vijgenboom, E.; Heijnen, J.J.; Kraal, B.

    2006-01-01

    Filamentous actinomycetes are commercially widely used as producers of natural products (in particular antibiotics) and of industrial enzymes. However, the mycelial lifestyle of actinomycetes, resulting in highly viscous broths and unfavorable pellet formation, has been a major bottleneck in their c

  10. Seasonal variation in bioaerosol exposure during biowaste collection and measurements of leaked percolate

    DEFF Research Database (Denmark)

    Nielsen, Birgitte Herbert; Nielsen, Eva Møller; Breum, Niels O.

    2000-01-01

    actinomycetes 9.0 x 10(2) cfu m(-3), bacteria 1.0 x 10(4) cfu m(-3), endotoxin 16 EU m(-3) (1.0 ng m(-3)) and dust 0.33 mg m(-3). A seasonal variation was observed for microorganisms, moulds, A. fumigatus, mesophilic actinomycetes and endotoxin (P

  11. A Novel Method Isolated Microorganisms in Soil Granule

    Institute of Scientific and Technical Information of China (English)

    Liu Bao-ping; Xiang Wen-sheng; Wang Hong-yan; Fu Shi-cong

    2012-01-01

    A novel method isolated microorganisms in soil granule was built. The key steps included: repeated elutriation of soil by sterilized water, inoculation on the plates with the elutriated sediments, incubation of the plates and isolation of the actinomycetes by using selected culture medium. We formulated that most microflora included the dominant actinomycetes in the soil were carried away with the sterilized water in the elutriation procedure, some rare actinomycetes and few other microflora included bacteria were remained in the elutriated sediments, the other microflora were excluded to grew into colonies on the plates by using selective culture medium for actinomycetes in the elutriated sediments. Results showed the supposition. Non-streptomycete actinomycetes were isolated both from black soil samples from Chinese northeast area and compost samples from Chinese central area. Soil fungi in granule were isolated by using the selective conditions to favor fungi. The results showed that the method was effective

  12. Deep sea as a source of novel-anticancer drugs: update on discovery and preclinical/clinical evaluation in a systems medicine perspective

    OpenAIRE

    Russo, Patrizia; Del Bufalo, Alessandra; Fini, Massimo

    2015-01-01

    The deep-sea habitat is a source of very potent marine-derived agents that may inhibit the growth of human cancer cells “in vitro” and “in vivo”. Salinosporamide-A, Marizomib, by Salinispora species is a proteasome inhibitor with promising anticancer activity (Phase I/II trials). Different deep-sea-derived drugs are under preclinical evaluation. Cancer is a complex disease that may be represented by network medicine. A simple consequence is the change of the concept of target entity from a si...

  13. Deep sea as a source of novel-anticancer drugs: update on discovery and preclinical/clinical evaluation in a systems medicine perspective.

    Science.gov (United States)

    Russo, Patrizia; Del Bufalo, Alessandra; Fini, Massimo

    2015-01-01

    The deep-sea habitat is a source of very potent marine-derived agents that may inhibit the growth of human cancer cells "in vitro" and "in vivo". Salinosporamide-A, Marizomib, by Salinispora species is a proteasome inhibitor with promising anticancer activity (Phase I/II trials). Different deep-sea-derived drugs are under preclinical evaluation. Cancer is a complex disease that may be represented by network medicine. A simple consequence is the change of the concept of target entity from a single protein to a whole molecular pathway and or cellular network. Deep-sea-derived drugs fit well to this new concept. PMID:26600744

  14. Deep sea as a source of novel-anticancer drugs

    OpenAIRE

    Russo, Patrizia; Del Bufalo, Alessandra; Fini, Massimo

    2015-01-01

    The deep-sea habitat is a source of very potent marine-derived agents that may inhibit the growth of human cancer cells “in vitro” and “in vivo”. Salinosporamide-A, Marizomib, by Salinispora species is a proteasome inhibitor with promising anticancer activity (Phase I/II trials). Different deep-sea-derived drugs are under preclinical evaluation. Cancer is a complex disease that may be represented by network medicine. A simple consequence is the change of the concept of target entity from a si...

  15. AcEST: DK944480 [AcEST

    Lifescience Database Archive (English)

    Full Text Available n sp|P20430|L_TACV RNA-directed RNA polymerase OS=Tacaribe virus Align length 54 Score (bit) 32.0 E-value 0....sp|P20430|L_TACV RNA-directed RNA polymerase OS=Tacaribe virus G... 32 0.99 sp|A7HMQ2|FOLD_FERNB Bifunctiona...protein folD 2 OS=Salinispora... 29 8.4 >sp|P20430|L_TACV RNA-directed RNA polymerase OS=Tacaribe virus GN=L

  16. Evaluation of Streptomyces strains isolated from herbal vermicompost for their plant growth-promotion traits in rice.

    Science.gov (United States)

    Gopalakrishnan, Subramaniam; Vadlamudi, Srinivas; Bandikinda, Prakash; Sathya, Arumugam; Vijayabharathi, Rajendran; Rupela, Om; Kudapa, Himabindu; Katta, Krishnamohan; Varshney, Rajeev Kumar

    2014-01-20

    Six actinomycetes, CAI-13, CAI-85, CAI-93, CAI-140, CAI-155 and KAI-180, isolated from six different herbal vermi-composts were characterized for in vitro plant growth-promoting (PGP) properties and further evaluated in the field for PGP activity in rice. Of the six actinomycetes, CAI-13, CAI-85, CAI-93, CAI-140 and CAI-155 produced siderophores; CAI-13, CAI-93, CAI-155 and KAI-180 produced chitinase; CAI-13, CAI-140, CAI-155 and KAI-180 produced lipase; CAI-13, CAI-93, CAI-155 and KAI-180 produced protease; and CAI-13, CAI-85, CAI-140 and CAI-155 produced ß-1-3-glucanase whereas all the six actinomycetes produced cellulase, hydrocyanic acid and indole acetic acid (IAA). The actinomycetes were able to grow in NaCl concentrations of up to 8%, at pH values between 7 and 11, temperatures between 20 and 40 °C and compatible with fungicide bavistin at field application levels. In the rice field, the actinomycetes significantly enhanced tiller numbers, panicle numbers, filled grain numbers and weight, stover yield, grain yield, total dry matter, root length, volume and dry weight over the un-inoculated control. In the rhizosphere, the actinomycetes also significantly enhanced total nitrogen, available phosphorous, % organic carbon, microbial biomass carbon and nitrogen and dehydrogenase activity over the un-inoculated control. Sequences of 16S rDNA gene of the actinomycetes matched with different Streptomyces species in BLAST analysis. Of the six actinomycetes, CAI-85 and CAI-93 were found superior over other actinomycetes in terms of PGP properties, root development and crop productivity. qRT-PCR analysis on selected plant growth promoting genes of actinomycetes revealed the up-regulation of IAA genes only in CAI-85 and CAI-93. PMID:24113511

  17. Separation and Screening of Actinomycete Strain for Bio-degumming on Soil of Cannabis Sativa L.Roots%大麻根部土壤中具有果胶分解能力的放线菌分离与筛选

    Institute of Scientific and Technical Information of China (English)

    汪学军; 殷智超

    2013-01-01

    为筛选对大麻具有生物脱胶功能的放线菌,采用平板稀释法对大麻根部土壤稀释后涂布在分离培养基平板上,经培养、分离、纯化,挑选单个菌落.从中共分离得到53株放线菌,采用平板透明圈法对分离得到的放线菌进行脱胶能力筛选.实验结果表明,有4株不同的放线菌会产生透明圈,其中DM6产生透明圈最大,直径为2.41 cm.

  18. 放线菌Act12与腐植酸钾配施对丹参生长及其根域微生态的影响%Effects of combined application of actinomycetes Act12 bio-control agents and potassium humate on growth and microbial flora in rooting zone of Salvia miltiorrhiza Bge

    Institute of Scientific and Technical Information of China (English)

    段佳丽; 薛泉宏; 舒志明; 王东胜; 何斐

    2015-01-01

    探讨生防放线菌菌剂与腐植酸钾配施对丹参生长及其根域微生态的影响.以常规移栽处理为对照,研究小区试验中放线菌菌剂与腐植酸钾不同配施比例下对丹参生长、产量及抗根结线虫侵染的影响;并采用稀释平皿涂抹法测定丹参根区土壤、根表土壤、根外土壤及根系中细菌(B)、真菌(F)与放线菌(A)的数量,同时对优势细菌、真菌和放线菌进行了分子生物学鉴定,研究放线菌菌剂与腐植酸钾配施处理下丹参根域微生态变化.研究结果表明:①配施能增强菌剂对丹参的促生效果.菌剂与腐植酸钾配施T20处理丹参出苗率较对照提高8.7%,收获时的死亡率较对照减少39.0%;茎叶鲜质量、根鲜质量、单株根鲜质量、根干质量以及单株根干质量分别较对照增加6.1%、28.6%、11.1%、36.3%以及9.0%.②可以调整丹参植株根域土壤微生态平衡,降低有害微生物数量,增加有益微生物数量,改善微生物区系.在丹参根表土壤中,菌剂与腐植酸钾配施处理B/A值较对照降低78.4%,A/F值较对照增加95.0%.在丹参根系内,菌剂与腐植酸钾配施处理细菌数量较对照增加195.0%,未检测到真菌和放线菌存在.③在放线菌处理丹参根区、根表土壤中,有6株优势菌可能对丹参生长及抗病有益:3株优势细菌分别为硝基愈疮木胶节杆菌(Arthrobacter nitroguajacolicus)、放射型根瘤菌(Rhizobium radiobacter)和弗雷德里克斯堡假单胞菌(Pseudomonas frederiksbergensis);3株优势放线菌分别为淀粉酶产色链霉菌(Streptomyces diastatochromogenes)、砖红链霉菌(S.lateritius)和卡伍尔链霉菌(S.cavourensis).有2株优势菌疑为有害微生物:优势细菌为耐寒短杆菌(Brevibacterium frigoritolerans),优势放线菌为肿痂链霉菌(S.turgidiscabies).这2种菌对其他作物的有害作用已有报道.④对丹参根结线虫侵染有强烈抑制作用,可使田间根结线虫侵染率降低49.3%.生防放线菌与腐植酸钾配施处理后能明显促进丹参生长,提高丹参产量及抗病虫能力,调节丹参根域微生态平衡.

  19. 放线菌WZ1-5019的鉴定及其发酵液对香蕉黑星病的田间防治效果试验%The Identification of Actinomycetes Strain WZ1-5019 and the Field Control Effect Tests of the Fermented Liquid on Banana Freckle Disease

    Institute of Scientific and Technical Information of China (English)

    廖东奇; 曾涛; 马婷; 曾会才

    2011-01-01

    放线菌WZ1-5019菌株是从海南五指山原始森林土壤中分离筛选得到的一株对香蕉黑星病菌具有强烈抑制作用的生防菌,其发酵液无菌滤液亦对香蕉黑星病菌具有较强抑菌活性.根据形态观察、培养特征、生理生化鉴定及16S rDNA序列分析,初步鉴定为链霉菌属中的Streptomyces costaricanus.香蕉黑星病是香蕉的重要病害之一,至今尚无生物农药用于香蕉黑星病的防治,本试验采用链霉菌WZ1-5019菌株发酵液进行香蕉黑星病田间防治试验,结果表明,施用链霉菌WZ 1-5019菌株发酵液3次后,对香蕉黑星病的平均防治效果达81.68%,显著优于30%爱苗乳油1 500倍液防效(59.96%)和10%世高水分散粒剂1 500倍液防效(53.58%),具有开发成香蕉黑星病生物农药的前景.%The Actinomyceles strain WZ1-5019 is a biological control agent which has strong inhibitory effects on Macrophoma musae from the virgin forest soil of Five-finger Mountain Natural Reserve of Hainan Province, China. Moreover, its filtrate of fermentation liquid has strong inhibitory effects on Macrophoma musae. Based on the results of morphological, physiological, chemotaxonomic characteristics and 16S rDNA sequence analysis, the strain WZ1 -5019 was placed within the genus Streptomyces and classified as the species Streplomyces costaricanus. Banana freckle disease is one of the main diseases of Musa, there is no a biological pesticide reported for the controlling of banana freckle disease to date. The results of the present tests in fields showed that the filtrate of fermentation liquid of the Streptomyces strain WZ1-5019 for 3 times had exerted an average control effect up to 81.68% against banana freckle disease, significantly better than that treated with 30% Armure EC 1 500 times dilution (59.96%) and 10% difenoconazole 1 500 times dilution (53.58%), and thus had application potential to be used as a biological pesticide against banana freckle disease.

  20. Effect of Actinomycetes on Main Pathogenic Bacteria and Odor-producing Bacteria from Swine Manure%几种放线菌处理后对猪粪中主要病原菌和恶臭产生菌的影响研究

    Institute of Scientific and Technical Information of China (English)

    黄灿; 唐新燕; 李季; 彭绪亚

    2007-01-01

    采用室内培养方法,研究评估了细黄链霉菌(Streptomyces microflavus)、抗生链霉菌(Streptomyces antibioticus)、灰色链霉菌(Streptomyces griseus)三种放线菌及其组合对猪粪中主要病原菌的影响,并对其体外的抑菌作用机理进行了初步探讨.结果表明,接菌处理能有效减少猪粪中的沙门氏菌(Salmonella spp.)、病原性大肠埃希氏菌(Escherichia coli O157)、空肠弯曲杆菌(Campylobacter spp.)、单核细胞增生李斯特氏菌(Listeria monocytogenos)的数量.与对照组相比,单独添加细黄链霉菌组后猪粪中空肠弯曲杆菌的数量从3.1×101 cfu·g-1降至不可检测.放线菌胞内外活性混合物质的体外抗菌试验的结果显示,不管是单独处理还是几种放线菌的复合处理都对供试的大肠杆菌、梭菌、优杆菌、沙门氏菌、病原性大肠埃希氏菌、空肠弯曲杆菌、单核细胞增生李斯特氏菌表现出一定程度的抑制作用,在抑菌能力方面,单独添加细黄链霉菌的效果优于其他各组.

  1. 在新分离的稀有放线菌群体中检测线型染色体、质粒和噬菌体%Detection of the linear chromosomes, plasmids and phage among a population of the newly isolated rare-actinomycetes strains

    Institute of Scientific and Technical Information of China (English)

    田永强; 褚以文; 赵国屏; 覃重军

    2006-01-01

    稀有放线菌属于革兰阳性细菌,具有重要的应用价值.目前对绝大多数稀有放线菌还没有合适的遗传操作系统.本文报道利用脉冲电泳技术和碱变性方法,对土壤中新分离的约200株稀有放线菌的遗传物质进行了检测.结果显示,除约20个菌株的染色体可能为环型结构外,其余染色体为线型结构.在检测到的染色体外遗传因子中,包括在诺卡菌属菌株中检测到1个线型质粒、4个环型质粒和1个噬菌体,此外,在链孢囊菌属中首次检测到1个质粒.这些遗传因子的发现,为发展稀有放线菌类群的遗传操作体系提供了基础.

  2. Selection of Antagonistic Actinomycetes JSJ-129-08 from Soil and Primary Research of Its Active Products%土壤拮抗放线菌JSJ-129-08的筛选及活性产物的初步研究

    Institute of Scientific and Technical Information of China (English)

    焦少娟; 安德荣; 刘欢; 汤兴春; 慕小倩; 张勤福; 杨文军

    2008-01-01

    将从陕西杨凌地区不同类型土壤中分离出的400多株放线菌进行皿内对峙初筛和无菌发酵液复筛,筛选出1株对稻瘟病菌(Pyricularia grisea)、小麦赤霉病菌(Gibberella zeae)、小麦根腐病菌(Bipolaris sorokiniana (Sacc.)Shoemakey)、玉米大斑病菌(Exserohilum turcicum (Pass.) Leonard et Suggs)、棉花枯萎病菌(Fusarium oxysporum f. sp. vasinfectum)、番茄早疫病菌(Alternaria solani Sorauer)、小麦白粉病菌(Blumeria graminis)、黄瓜枯萎病菌(Fusarium oxysporum f. sp. cucumerirum)均具有强烈拮抗作用的JSJ-129-08号菌株,并对其生物学活性进行了初步测定,孢子萌发试验结果表明JSJ-129-08发酵液对玉米大斑和烟草赤星病原菌(Alternaria alternata)的孢子萌发有较强的抑制作用,在600 μg/mL浓度下抑制率分别为92.8%和83.2%,300 μg/mL浓度下抑制率分别为67.8%和64.8%.温室盆栽试验结果显示JSJ-129-08发酵原液对小麦白粉病(Blumeria graminis)的保护和治疗效果可达78.6%和72.2%,在较高浓度下 (10倍液)对小麦白粉病的保护和治疗效果可达76.4%和66.0%.

  3. Differential inhibition of macrophage microbicidal activity by liposomes.

    OpenAIRE

    Gilbreath, M J; Swartz, G M; Alving, C R; Nacy, C A; Hoover, D L; Meltzer, M S

    1985-01-01

    In vitro culture of murine resident peritoneal macrophages with lymphokine (LK)-rich leukocyte culture fluids induces enhanced microbicidal activity against amastigotes of the protozoan parasite Leishmania tropica. Macrophages infected with Leishmania and treated with LKs after infection acquire the capacity to kill the intracellular parasite within 72 h. When compared with control macrophage cultures treated with medium lacking LKs, 80 to 90% fewer macrophages treated with LKs contained amas...

  4. Molecular Identification and Polymorphism Determination of Cutaneous and Visceral Leishmaniasis Agents Isolated from Human and Animal Hosts in Iran

    Directory of Open Access Journals (Sweden)

    Homa Hajjaran

    2013-01-01

    Full Text Available Amplification of internal transcript spacer 1 of ribosomal RNA (ITS1-RNA gene followed by RFLP analysis and sequencing was used to identify the causing agents of cutaneous and visceral leishmaniasis (CL and VL in humans and animal reservoir hosts from various geographical areas in Iran. We also used random amplified polymorphic DNA (RAPD-PCR to obtain polymorphisms among isolates of Leishmania spp. Totally, 362 suspected human and animal cases including 173 CL, 49 VL, 60 rodents, and 80 domestic dogs were examined for Leishmania infection. From 112 culture-positive samples prepared from CL cases, 75 (67% were infected with L. major and 37 (33% with L. tropica. Of the 60 rodents examined, 25 (41.6% harbored the Leishmania infection; 21 were infected with L. major and 4 with L. turanica. From 49 suspected VL, 29 were positive by direct agglutination test (DAT, whereas microscopy detected parasite in bone marrow of 25 and culture in 28 of the patients. Two VL patients were infected with L. tropica and 26 with L. infantum. Of the 80 domestic dogs, 56 showed anti-Leishmania antibodies with DAT. Of these, 55 were positive by both microscopy and culture. Molecular identity, obtained only for 47 samples, revealed L. infantum in 43 and L. tropica in 4 dogs. The polymorphisms among L. tropica and L. major isolates were 3.6% and 7.3%; the rate among human and canine VL isolates was 2.8% and 9.8%, respectively. Our results showed that at least four different Leishmania species with various polymorphisms circulate among humans and animal hosts in Iran.

  5. Plate tectonics drive tropical reef biodiversity dynamics

    OpenAIRE

    Leprieur, Fabien; Descombes, Patrice; Gaboriau, Théo; Cowman, Peter F.; Parravicini, Valeriano; Kulbicki, Michel; Carlos J Melián; de Santana, Charles N.; Heine, Christian; Mouillot, David; Bellwood, David R.; Pellissier, Loïc

    2016-01-01

    The Cretaceous breakup of Gondwana strongly modified the global distribution of shallow tropical seas reshaping the geographic configuration of marine basins. However, the links between tropical reef availability, plate tectonic processes and marine biodiversity distribution patterns are still unknown. Here, we show that a spatial diversification model constrained by absolute plate motions for the past 140 million years predicts the emergence and movement of diversity hotspots on tropica...

  6. Antileishmanial effect of silver nanoparticles and their enhanced antiparasitic activity under ultraviolet light

    OpenAIRE

    Allahverdiyev, Adil M; Abamor, Emrah Sefik; Bagirova, Malahat; Ustundag, Cem B; Kaya, Cengiz; Kaya, Figen; Rafailovich, Miriam

    2011-01-01

    Leishmaniasis is a protozoan vector-borne disease and is one of the biggest health problems of the world. Antileishmanial drugs have disadvantages such as toxicity and the recent development of resistance. One of the best-known mechanisms of the antibacterial effects of silver nanoparticles (Ag-NPs) is the production of reactive oxygen species to which Leishmania parasites are very sensitive. So far no information about the effects of Ag-NPs on Leishmania tropica parasites, the causative agen...

  7. Microscopic and Molecular Detection of Leishmania Species Among Suspected Patients of Cutaneous Leishmaniasis Using ITS-r DNA in Fars Province

    Directory of Open Access Journals (Sweden)

    O Dehnam

    2012-10-01

    Full Text Available Introduction: Fars province is one of the most important foci of leishmaniasis that includes two types of cutaneous (urban and rural forms and visceral leishmaniasis in sympatry. To study leishmaniasis among suspected patients of cutaneous leishmaniasis in 5 counties of Shiraz, Firouz abad, GhirـKarzin, Farashband and Larestan, both microscopic and molecular analysis were carried out in the present study. Methods: The samples were smeared on the microscopic slides and were also stained by Giemsa. All smears were examined under a light microscope and the positive smears were scored for amastigote frequency. DNA was extracted from stained smears and Leishmania DNA was detected by amplification of ITS1ـ5.8sـITS2 fragments. Amplicons were analyzed using electrophoresis in 1.5 % agarose gel containing ethidium bromide. Results: Among 34 studied patients, 29 cases (%85 were positive in microscopic and 32 (%94 in molecular analysis using standard PCR. All examined samples were infected with L.major except one (%3 that was infected with L.tropica. Most lesions due to L.major were located on the feet, whereas ulcer due to L.tropica was on the forehead. Conclusions: Preparing stained smears from active lesions of suspected patients (microscopic analysis removes the problem of Leishmania preservation and transition to culture media. Also, intergenic variations in amplified fragment of ITS-rDNA cause to produce fragments with different length and based on this difference, we can identify L. major and L. tropica separately. Using microscopic and molecular methods in present study confirmed presence of L.major and L.tropica as the causative agents of CL in studied regions of Fars.

  8. Rapid Healing of Cutaneous Leishmaniasis by High-Frequency Electrocauterization and Hydrogel Wound Care with or without DAC N-055: A Randomized Controlled Phase IIa Trial in Kabul

    OpenAIRE

    Ahmad Fawad Jebran; Ulrike Schleicher; Reto Steiner; Pia Wentker; Farouq Mahfuz; Hans-Christian Stahl; Faquir Mohammad Amin; Christian Bogdan; Kurt-Wilhelm Stahl

    2014-01-01

    Background Anthroponotic cutaneous leishmaniasis (CL) due to Leishmania (L.) tropica infection is a chronic, frequently disfiguring skin disease with limited therapeutic options. In endemic countries healing of ulcerative lesions is often delayed by bacterial and/or fungal infections. Here, we studied a novel therapeutic concept to prevent superinfections, accelerate wound closure, and improve the cosmetic outcome of ACL. Methodology/Principal Findings From 2004 to 2008 we performed a two-arm...

  9. Responding to climate change and the global land crisis: REDD+, market transformation and low-emissions rural development

    OpenAIRE

    Nepstad, Daniel C.; Boyd, William; Stickler, Claudia M.; Bezerra, Tathiana; Azevedo, Andrea A.

    2013-01-01

    Climate change and rapidly escalating global demand for food, fuel, fibre and feed present seemingly contradictory challenges to humanity. Can greenhouse gas (GHG) emissions from land-use, more than one-fourth of the global total, decline as growth in land-based production accelerates? This review examines the status of two major international initiatives that are designed to address different aspects of this challenge. REDD+ is an emerging policy framework for providing incentives to tropica...

  10. Polymorphisms of cytochrome b gene in Leishmania parasites and their relation to types of cutaneous leishmaniasis lesions in Pakistan.

    Science.gov (United States)

    Myint, Chomar Kaung; Asato, Yutaka; Yamamoto, Yu-ichi; Kato, Hirotomo; Bhutto, Abdul M; Soomro, Farooq R; Memon, Muhamad Z; Matsumoto, Jun; Marco, Jorge D; Oshiro, Minoru; Katakura, Ken; Hashiguchi, Yoshihisa; Uezato, Hiroshi

    2008-02-01

    The exact species and/or strains of Leishmania parasites involved strongly influence the clinical and epidemiological features of leishmaniasis, and current knowledge of those influences and relationships is inadequate. We report that cytochrome b (cyt b) gene sequencing identified causal Leishmania parasites of 69 cutaneous leishmaniasis cases in Pakistan over a 3-year period. Of 21 cases in highland areas (Quetta city, Balochistan province), 16 (76.2%) were identified as Leishmania (L.) tropica and five (23.8%) as Leishmania (L.) major. Of 48 cases from lowland areas, cities/villages in Indus valley in Sindh and Balochistan provinces, 47 (97.9%) were identified as L. (L.) major and one (2.1%) as L. (L.) tropica. Statistical analysis (Fisher's exact test) revealed a significant difference (P < 0.0001) in the distribution of the two species by altitude; L. (L.) major is predominant in lowland and L. (L.) tropica at highland areas. The present result enriched our earlier finding, based on the first year's cultured parasite data, that only L. (L.) tropica was found in highland areas and only L. (L.) major in lowland areas. Among Leishmania samples analyzed, three types of cyt b polymorphism of L. (L.) major were found, including 45 (86.5%) cases of type I, six (11.5%) of type II and one (2%) of type III. We report for the first time on the presence of polymorphisms in L. (L.) major (types I, II and III) based on species identification using cyt b gene sequencing from clinical samples. Moreover, we found no correlation between clinical presentation (wet-, dry- and/or mixed-types of cutaneous lesions) and causal Leishmania parasites.

  11. Detailed regional predictions of N2O and NO emissions from a tropical highland rainforest

    Directory of Open Access Journals (Sweden)

    K. Butterbach-Bahl

    2013-01-01

    Full Text Available Tropical forest soils are a significant source for the greenhouse gas N2O as well as for NO, a precursor of tropospheric ozone. However, current estimates are uncertain due to the limited number of field measurements. Furthermore, there is considerable spatial and temporal variability of N2O and NO emissions due to the variation of environmental conditions such as soil properties, vegetation characteristics and meteorology. In this study we used a process-based model (ForestDNDC-tropica to estimate N2O and NO emissions from tropical highland forest (Nyungwe soils in southwestern Rwanda. To extend the model inputs to regional scale, ForestDNDC-tropica was linked to an exceptionally large legacy soil dataset. There was agreement between N2O and NO measurements and the model predictions though the ForestDNDC-tropica resulted in considerable lower emissions for few sites. Low similarity was specifically found for acidic soil with high clay content and reduced metals, indicating that chemo-denitrification processes on acidic soils might be under-represented in the current ForestDNDC-tropica model. The results showed that soil bulk density and pH are the most influential factors driving spatial variations in soil N2O and NO emissions for tropical forest soils. The area investigated (1113 km2 was estimated to emit ca. 439 ± 50 t N2O-N yr−1 (2.8–5.5 kg N2O-N ha−1 yr−1 and 244 ± 16 t NO-N yr−1 (0.8–5.1 kg N ha−1 yr−1. Consistent with less detailed studies, we confirm that tropical highland rainforest soils are a major source of atmospheric N2O and NO.

  12. Modelling ecological change over half a century in a subtropical estuary: impacts of climate change, land-use, urbanization and freshwater extraction

    OpenAIRE

    Condie, Scott A.; Hayes, Donna; Elizabeth A. Fulton; Savina, Marie

    2012-01-01

    The Clarence River Estuary is the largest estuary in southeast Australia, with an extensive floodplain encompassing multiple river channels and a large coastal lagoon. It is the focus of major commercial and recreational fisheries and there is pressure to divert its freshwater inputs for agricultural and domestic uses. We used a spatial biogeochemical model to simulate the variability and evolution of this system on timescales from days to decades over the past half century. Like most tropica...

  13. Genetic analysis of clinical isolates of Leishmania major from Isfahan, Iran

    OpenAIRE

    Gilda Eslami, Rasoul Salehi, Sharifeh Khosravi & Monir Doudi

    2012-01-01

    Background & objectives: Leishmaniasis is a geographically widespread severe disease which includes visceralleishmaniasis (VL) and cutaneous leishmaniasis (CL). There are 350 million people at risk in over 80 countries.In the Old World, CL is usually caused by Leishmania major, L. tropica, and L. aetiopica complex of which 90%of cases occur in Afghanistan, Algeria, Iran, Iraq, Saudi Arabia, Syria, Brazil and Peru. Recently, Eslami et al(2011) reported a novel TRYP6 gene encoding tryparedoxin...

  14. Tropical forests are both evolutionary cradles and museums of leaf beetle diversity

    OpenAIRE

    McKenna, Duane D.; Farrell, Brian D.

    2006-01-01

    The high extant species diversity of tropical lineages of organisms is usually portrayed as a relatively recent and rapid development or as a consequence of the gradual accumulation or preservation of species over time. These explanations have led to alternative views of tropical forests as evolutionary “cradles” or “museums” of diversity, depending on the organisms under study. However, biogeographic and fossil evidence implies that the evolutionary histories of diversification among tropica...

  15. The identification of malaria in paleopathology-An in-depth assessment of the strategies to detect malaria in ancient remains.

    Science.gov (United States)

    Bianucci, Raffaella; Araujo, Adauto; Pusch, Carsten M; Nerlich, Andreas G

    2015-12-01

    The comprehensive analyses of human remains from various places and time periods, either by immunological or molecular approaches, provide circumstantial evidence that malaria tropica haunted humankind at least since dynastic ancient Egypt. Here we summarize the "actual state-of-the-art" of these bio-molecular investigations and offer a solid basis for the discussion of the paleopathology of malaria in human history. PMID:26366472

  16. Isolation of Endophytic Streptomyces Strains from Surface-Sterilized Roots

    OpenAIRE

    Sardi, P.; Saracchi, M.; Quaroni, S.; Petrolini, B.; Borgonovi, G. E.; Merli, S.

    1992-01-01

    When the roots of 28 plant species were surface sterilized and incubated on agar medium, endophytic actinomycetes in the root cortex were observed by direct microscopic observation and pure culture techniques.

  17. Biodiversity of Trichoderma spp.in TUB culture collection

    Institute of Scientific and Technical Information of China (English)

    Szakacs G

    2004-01-01

    @@ Culture collection of the Technical University of Budapest (TUB) comprises approx. 2800microorganisms with special emphasis on lignocellulose degrading fungi and actinomycetes. For isolation and screening programs, 460 soils are stored at + 5 ℃.

  18. ACTINOMYCES NAESLUNDII IN PATIENTS WITH HEMATOLOGICAL MALIGNANCIES

    Directory of Open Access Journals (Sweden)

    S. H. Rasa J. V Yusefi

    2006-09-01

    Full Text Available Mycotic infections have been commonly encountered in patients with hematological malignancies. The current study seeks the prevalence of actinomycete infection in patients suffering from blood cells malignancies. A hundred and fifty patients with some kinds of blood cells dyscrasia who underwent the bone marrow aspiration were recruited. In addition to the diagnostic work up, samples were examined for the presence of actinomycete infections. Twenty one samples were positive for actinomycete infections. All of them were infected by Actinomyces naeslundii. All the positive patients were categorized in malignant groups, acute myelocytic leukemia, chronic myelocytic leukemia, and lymphoma and myelodysplastic syndrome. High incidence of actinomycete infections in the present study population was interesting. These results can also be suggestive of a pre-malignancy role for the actinomycosis.

  19. REFORESTATION AND SEEDLING SYMBIONTS

    Science.gov (United States)

    Tree seedlings are dependent on symbiotic associations with microorganisms including bacteria, fungi, and actinomycetes for normal growth and development. itrogen fixing leguminous and non-leguminous trees form symbiotic relationships with Rhizobium (bacteria) and Frankia (actino...

  20. The use of secondary metabolite profiling in chemotaxonomy of filamentous fungi

    DEFF Research Database (Denmark)

    Frisvad, Jens Christian; Andersen, Birgitte; Thrane, Ulf

    2008-01-01

    distribution throughout the fungal kingdom. However, this is the very quality that makes secondary metabolites so useful in classification and identification. Four groups of organisms are particularly good producers of secondary metabolites: plants, fungi, lichen fungi, and actinomycetes, whereas yeasts...

  1. Differential proteomic analysis reveals novel links between primary metabolism and antibiotic production in Amycolatopsis balhimycina

    DEFF Research Database (Denmark)

    Gallo, G.; Renzone, G.; Alduina, R.;

    2010-01-01

    A differential proteomic analysis, based on 2-DE and MS procedures, was performed on Amycolatopsis balhimycina DSM5908, the actinomycete producing the vancomycin-like antibiotic balhimycin. A comparison of proteomic profiles before and during balhimycin production characterized differentially...

  2. Heterologous protein production in Streptomyces lividans

    DEFF Research Database (Denmark)

    Rattleff, Stig

    Alternative hosts for expressing heterologous proteins have recently gained an increased attention. Actinomycetes, and among these especially the Streptomycetes are considered promising candidates, since they through their saprophytic lifestyle are capable of excreting large amounts of proteins...

  3. Multilocus enzyme electrophoresis and cytochrome B gene sequencing-based identification of Leishmania isolates from different foci of cutaneous leishmaniasis in Pakistan.

    Science.gov (United States)

    Marco, Jorge D; Bhutto, Abdul M; Soomro, Farooq R; Baloch, Javed H; Barroso, Paola A; Kato, Hirotomo; Uezato, Hiroshi; Katakura, Ken; Korenaga, Masataka; Nonaka, Shigeo; Hashiguchi, Yoshihisa

    2006-08-01

    Seventeen Leishmania stocks isolated from cutaneous lesions of Pakistani patients were studied by multilocus enzyme electrophoresis and by polymerase chain reaction amplification and sequencing of the cytochrome b (Cyt b) gene. Eleven stocks that expressed nine zymodemes were assigned to L. (Leishmania) major. All of them were isolated from patients in the lowlands of Larkana district and Sibi city in Sindh and Balochistan provinces, respectively. The remaining six, distributed in two zymodemes (five and one), isolated from the highland of Quetta city, Balochistan, were identified as L. (L.) tropica. The same result at species level was obtained by the Cyt b sequencing for all the stocks examined. No clear-cut association between the clinical features (wet or dry type lesions) and the Leishmania species involved was found. Leishmania (L.) major was highly polymorphic compared with L. (L.) tropica. This difference may be explained by the fact that humans may act as a sole reservoir of L. (L.) tropica in anthroponotic cycles; however, many wild mammals can be reservoirs of L. (L.) major in zoonotic cycles.

  4. Systems Biology Approaches to Understand Natural Products Biosynthesis

    OpenAIRE

    Licona-Cassani, Cuauhtemoc; Cruz-Morales, Pablo; Manteca, Angel; Barona-Gomez, Francisco; Nielsen, Lars K; Marcellin, Esteban

    2015-01-01

    Actinomycetes populate soils and aquatic sediments that impose biotic and abiotic challenges for their survival. As a result, actinomycetes metabolism and genomes have evolved to produce an overwhelming diversity of specialized molecules. Polyketides, non-ribosomal peptides, post-translationally modified peptides, lactams, and terpenes are well-known bioactive natural products with enormous industrial potential. Accessing such biological diversity has proven difficult due to the complex regul...

  5. Systems biology approaches to understand natural products biosynthesis

    OpenAIRE

    Cuauhtemoc eLicona-Cassani; Pablo Cruz Morales; Angel eManteca; Francisco eBarona-Gomez; Lars Keld Nielsen; Esteban eMarcellin

    2015-01-01

    Actinomycetes populate soils and aquatic sediments which impose biotic and abiotic challenges for their survival. As a result, actinomycetes metabolism and genomes have evolved to produce an overwhelming diversity of specialized molecules. Polyketides, non-ribosomal peptides, post-translationally modified peptides, lactams and terpenes are well known bioactive natural products with enormous industrial potential. Accessing such biological diversity has proven difficult due to the complex regul...

  6. Elucidating the molecular physiology of lantibiotic NAI-107 production in Microbispora ATCC-PTA-5024

    OpenAIRE

    Gallo, Giuseppe; Renzone, Giovanni; Palazzotto, Emilia; Monciardini, Paolo; Arena, Simona; Faddetta, Teresa; Giardina, Anna; Alduina, Rosa; Weber, Tilmann; Sangiorgi, Fabio; Russo, Alessandro; Spinelli, Giovanni; Sosio, Margherita; Scaloni, Andrea; Puglia, Anna Maria

    2016-01-01

    Background The filamentous actinomycete Microbispora ATCC-PTA-5024 produces the lantibiotic NAI-107, which is an antibiotic peptide effective against multidrug-resistant Gram-positive bacteria. In actinomycetes, antibiotic production is often associated with a physiological differentiation program controlled by a complex regulatory and metabolic network that may be elucidated by the integration of genomic, proteomic and bioinformatic tools. Accordingly, an extensive evaluation of the proteomi...

  7. Interaction specificity between leaf-cutting ants and vertically transmitted Pseudonocardia bacteria

    OpenAIRE

    Breum Andersen, Sandra; Yek, Sze Huei; Nash, David R.; Boomsma, Jacobus J.

    2015-01-01

    Background The obligate mutualism between fungus-growing ants and microbial symbionts offers excellent opportunities to study the specificity and stability of multi-species interactions. In addition to cultivating fungus gardens, these ants have domesticated actinomycete bacteria to defend gardens against the fungal parasite Escovopsis and possibly other pathogens. Panamanian Acromyrmex echinatior leaf-cutting ants primarily associate with actinomycetes of the genus Pseudonocardia. Colonies a...

  8. MOLECULAR DIVERSITY OF ANTAGONISTIC STREPTOMYCES SPP. AGAINST BOTRYTIS ALLII, THE AGENT OF ONION GRAY MOLD USING RANDOM AMPLIFIED POLYMORPHIC DNA (RAPD) MARKERS

    OpenAIRE

    Jorjandi, M.; A. Baghizadeh

    2014-01-01

    As an aim in sustainable agriculture, biological control of plant diseases has received intensive attention mainly as a response to public concern about the use of chemical fungicides in the environment. Soil Actinomycetes particularly Streptomyces spp. enhance soil fertility and have antagonistic activity against wide range of plant pathogens. To investigate for biocontrol means against the pathogen, 30 isolates of Actinomycetes have been isolated from agricultural soils of Kerman province o...

  9. In vitro Antimicrobial Activity of Extracts From Marine Streptomyces Isolated From Mangrove Sediments of Tanzania

    Directory of Open Access Journals (Sweden)

    Eva Mathias Sosovele

    2012-04-01

    Full Text Available This study was undertaken to isolate Actinomycetes from mangrove sediments of Tanzania and evaluate their potential for production of bioactive metabolites. Starch cacein agar medium was used to isolate the actinomycetes. Extraction of Actinomycetes using ethyl acetate (1:1, afforded dry extracts. The extracts were tested for antimicrobial activity and brine shrimp toxicity test. A total of three isolates (ACTN 1, ACTN 2 and ACTN 3 were obtained by using culture medium selective for Actinomycetes. Actinomycetes specific primers; S-C-Act-235-S-20 and S-C-Act-878-A-19 were used to identify two isolates as Streptomyces sp and one as actinomycetes sp. The strongest activity against bacterium (Bacillus subtillis and fungus (Candida albicans was exhibited by crude extracts of Streptomyces sp (ACTN 2 and ACTN 3. Crude extracts of all three isolates exhibited non- cytotoxic activity against brine shrimp larvae with LC50 values ranging from 250 - 446 μg/ml respectively. These results provide evidence that the mangrove sediments streptomycetes could be promising sources for antimicrobial bioactive agents.

  10. Isolation and characterization of actinobacteria from Yalujiang coastal wetland, North China

    Institute of Scientific and Technical Information of China (English)

    Jicheng; Yu; Liu; Zhang; Qiu; Liu; Xiaohui; Qi; Ying; Ji; Beom; Seok; Kim

    2015-01-01

    Objective: To evaluate various types of samples from the different marine environments as sources of actinomycetes from the Yalujiang coastal wetland, North China, and to screen their antimicrobial properties. Further, the identified actinomycetes were characterized based on morphological, biochemical, and physiological characteristics.Methods: Eight different production media were used to isolate actinomycets from different stations of marine soil sediments in Yalujiang coastal wetland and the genotypic positions were established by 16 S r DNA.Results: A total of 172 actinomycetal isolates were obtained from 13 samples using five media. The most effective culture media in the isolation of actinobacteria were Gause’s Synthetic agar and Starch-casein agar. Among 172 isolates, 46 isolates(26.74%) showed antibacterial activity, 70.93% belonged to the genus Streptomyces, others were Micromonospora spp. and Rhodococcus spp. Out of the 46 isolates, two cultures were further supported by morphological characterization analysis.Conclusions: This is the first report about actinomycetes isolated from Yalujiang coastal wetland and it seems that the promising isolates from the unusual/unexplored wetland may prove to be an important step in the development of microbial natural product research.

  11. Screening of Alkaline Protease-Producing Streptomyces diastaticus and Optimization of Enzyme Production

    Directory of Open Access Journals (Sweden)

    Elham Dawoodi

    2014-12-01

    Full Text Available Background and Aim: Alkaline proteases are used in pharmaceutical, film and photography, silk production and food, leather and detergent industries. Actinomycetes are gram positive bacteria that produce different enzymes such as proteases. The aims of this research were isolation of native alkaline protease-producing Actinomycete spp. from different soil samples as well as optimizing the conditions for enzyme production. Materials and Methods: The different soil samples were collected from different locations of the provinces of Khouzestan, Chahar Mahalo Bakhtiari and Isfahan, Iran. After determining of the best alkaline protease producing species using Lowry method, the optimization of alkaline protease was performed. Results: The alkaline protease producing Actinomycete spp. was isolated from soil. The most enzyme activity was measured in S.diastaticus. The best concentration of sucrose as the carbon source for the highest production of alkaline protease was 10 g/l. The optimum pH and temperature for the alkaline protease production by S. diastaticus were 10 and 30°C respectively. The maximum activity of alkaline protease was measured at 200 rpm as the best aeration speed. Conclusions: This is the first report of alkaline protease production by Streptomyces diastaticus in Iran. The accomplished examinations in this research confirmed the previous theories of alkaline protease production by Actinomycetes relatively. Regarding the immense applications of alkaline proteases in several industries and isolation of a native alkaline protease producing Actinomycete, The production potential of this enzyme in our country could be accessible in the near future.

  12. Isolation and characterization of a Nocardiopsis sp. from honeybee guts.

    Science.gov (United States)

    Patil, Preeti B; Zeng, Yu; Coursey, Tami; Houston, Preston; Miller, Iain; Chen, Shawn

    2010-11-01

    Although actinomycetes are the plant-associated environmental bacteria best known for producing thousands of antibiotics, their presence in the guts of flower-feeding honeybees has rarely been reported. Here, we report on the selective isolation of actinomycetes from the gut microbiota of healthy honeybees, and their inhibitory activity against honeybee indigenous bacteria. More than 70% of the sampled honeybees (N>40) in a season carried at least one CFU of actinomycete. The isolates from bees of one location produced inhibitory bioactivities that were almost exclusively against several bee indigenous Bacillus strains and Gram-positive human pathogens but not Escherichia coli. An antibiotic-producing actinomycete closely related to Nocardiopsis alba was isolated from the guts in every season of the year. A DNA fragment encoding a homologous gene (phzD) involved in phenazine biosynthesis was identified in the isolate. Expression of the phzD detected by reverse transcription-PCR can explain the survival of this organism in anaerobic environments as some redox-active extracellular phenazines are commonly regarded as respiratory electron acceptors. The results raise important questions concerning the roles of the antibiotic-producing actinomycetes and the phenazine-like molecules in honeybee guts and honey. PMID:20846361

  13. Comparative efifcacy of marineStreptomyces formulation versus ciprolfoxacin ophthalmic solution for treatingStaphylococcus aureus-induced conjunctivitis in animal model

    Institute of Scientific and Technical Information of China (English)

    Femina Wahaab; Kalidass Subramaniam; Morris Jawahar

    2016-01-01

    Objective:To report the efficacy of marine actinomycetes in controllingStaphylococcus aureus (S. aureus)-induced conjunctivitis in experimental rabbit. Methods: The ethyl acetate extracts of the best isolates of actinomycetes from the soil samples of Rameswaram coastal regions, Tamil Nadu, India, were concentrated and re-constituted in buffer and used as actinomycetes ophthalmic suspension in this study. The anti-inflammatory efficacy of actinomycetes ophthalmic suspension was analysed in controllingS. aureus-induced conjunctivitis in rabbit in comparison with that of ciprofloxacin. Results:Among the four best isolates, theRAM25C4isolate had the highest antimicrobial activity in the secondary screening. Shelf life studies indicated that the activity can be retained for 75 days when it was stored at 8°C and the optimum temperature for storage was between –20°°C and 30°°C. The animal model studies indicated that there was a profound anti-conjunctivitis effect. The actinomycetes ophthalmic suspension had better activity than ciprofloxacin ophthalmic solution. Conclusions:This is the first time to report thatStreptomyces bacillaris strainRAM25C4 has antimicrobial effect in controlling ophthalmic pathogenS. aureus underin vitro condition and thein vivo anti-inflammatory activity in controllingS. aureus-induced conjunctivitis.

  14. Isolation and characterization of actinobacteria from Yalujiang coastal wetland, North China

    Institute of Scientific and Technical Information of China (English)

    Jicheng Yu; Liu Zhang; Qiu Liu; Xiaohui Qi; Ying Ji; Beom Seok Kim

    2015-01-01

    Objective:To evaluate various types of samples from the different marine environments as sources of actinomycetes from the Yalujiang coastal wetland, North China, and to screen their antimicrobial properties. Further, the identified actinomycetes were characterized based on morphological, biochemical, and physiological characteristics. Methods:Eight different production media were used to isolate actinomycets from different stations of marine soil sediments in Yalujiang coastal wetland and the genotypic positions were established by 16S rDNA. Results:A total of 172 actinomycetal isolates were obtained from 13 samples using five media. The most effective culture media in the isolation of actinobacteria were Gause’s Synthetic agar and Starch-casein agar. Among 172 isolates, 46 isolates (26.74%) showed antibacterial activity, 70.93%belonged to the genus Streptomyces, others were Micromonospora spp. and Rhodococcus spp. Out of the 46 isolates, two cultures were further supported by morphological characterization analysis. Conclusions: This is the first report about actinomycetes isolated from Yalujiang coastal wetland and it seems that the promising isolates from the unusual/unexplored wetland may prove to be an important step in the development of microbial natural product research.

  15. Systems biology approaches to understand natural products biosynthesis

    Directory of Open Access Journals (Sweden)

    Cuauhtemoc eLicona-Cassani

    2015-12-01

    Full Text Available Actinomycetes populate soils and aquatic sediments which impose biotic and abiotic challenges for their survival. As a result, actinomycetes metabolism and genomes have evolved to produce an overwhelming diversity of specialized molecules. Polyketides, non-ribosomal peptides, post-translationally modified peptides, lactams and terpenes are well known bioactive natural products with enormous industrial potential. Accessing such biological diversity has proven difficult due to the complex regulation of cellular metabolism in actinomycetes and to the sparse knowledge of their physiology. The past decade, however, has seen the development of omics technologies that have significantly contributed to our better understanding of their biology. Key observations have contributed towards a shift in the exploitation of actinomycetes biology, such as using their full genomic potential, activating entire pathways through key metabolic elicitors and pathway engineering to improve biosynthesis. Here, we review recent efforts devoted to achieving enhanced discovery, activation and manipulation of natural product biosynthetic pathways in model actinomycetes using genome-scale biological datasets.

  16. Antileishmanial effect of silver nanoparticles and their enhanced antiparasitic activity under ultraviolet light

    Directory of Open Access Journals (Sweden)

    Allahverdiyev AM

    2011-11-01

    Full Text Available Adil M Allahverdiyev1, Emrah Sefik Abamor1, Malahat Bagirova1, Cem B Ustundag2, Cengiz Kaya2, Figen Kaya2, Miriam Rafailovich3 1Department of Bioengineering; 2Department of Metallurgical and Materials Engineering, Yildiz Technical University, Esenler, Istanbul, Turkey; 3Department of Materials Science and Engineering, Stony Brook University, Stony Brook, NY, USA Abstract: Leishmaniasis is a protozoan vector-borne disease and is one of the biggest health problems of the world. Antileishmanial drugs have disadvantages such as toxicity and the recent development of resistance. One of the best-known mechanisms of the antibacterial effects of silver nanoparticles (Ag-NPs is the production of reactive oxygen species to which Leishmania parasites are very sensitive. So far no information about the effects of Ag-NPs on Leishmania tropica parasites, the causative agent of leishmaniasis, exists in the literature. The aim of this study was to investigate the effects of Ag-NPs on biological parameters of L. tropica such as morphology, metabolic activity, proliferation, infectivity, and survival in host cells, in vitro. Consequently, parasite morphology and infectivity were impaired in comparison with the control. Also, enhanced effects of Ag-NPs were demonstrated on the morphology and infectivity of parasites under ultraviolet (UV light. Ag-NPs demonstrated significant antileishmanial effects by inhibiting the proliferation and metabolic activity of promastigotes by 1.5- to threefold, respectively, in the dark, and 2- to 6.5-fold, respectively, under UV light. Of note, Ag-NPs inhibited the survival of amastigotes in host cells, and this effect was more significant in the presence of UV light. Thus, for the first time the antileishmanial effects of Ag-NPs on L. tropica parasites were demonstrated along with the enhanced antimicrobial activity of Ag-NPs under UV light. Determination of the antileishmanial effects of Ag-NPs is very important for the further

  17. Antileishmanial effect of silver nanoparticles and their enhanced antiparasitic activity under ultraviolet light.

    Science.gov (United States)

    Allahverdiyev, Adil M; Abamor, Emrah Sefik; Bagirova, Malahat; Ustundag, Cem B; Kaya, Cengiz; Kaya, Figen; Rafailovich, Miriam

    2011-01-01

    Leishmaniasis is a protozoan vector-borne disease and is one of the biggest health problems of the world. Antileishmanial drugs have disadvantages such as toxicity and the recent development of resistance. One of the best-known mechanisms of the antibacterial effects of silver nanoparticles (Ag-NPs) is the production of reactive oxygen species to which Leishmania parasites are very sensitive. So far no information about the effects of Ag-NPs on Leishmania tropica parasites, the causative agent of leishmaniasis, exists in the literature. The aim of this study was to investigate the effects of Ag-NPs on biological parameters of L. tropica such as morphology, metabolic activity, proliferation, infectivity, and survival in host cells, in vitro. Consequently, parasite morphology and infectivity were impaired in comparison with the control. Also, enhanced effects of Ag-NPs were demonstrated on the morphology and infectivity of parasites under ultraviolet (UV) light. Ag-NPs demonstrated significant antileishmanial effects by inhibiting the proliferation and metabolic activity of promastigotes by 1.5- to threefold, respectively, in the dark, and 2- to 6.5-fold, respectively, under UV light. Of note, Ag-NPs inhibited the survival of amastigotes in host cells, and this effect was more significant in the presence of UV light. Thus, for the first time the antileishmanial effects of Ag-NPs on L. tropica parasites were demonstrated along with the enhanced antimicrobial activity of Ag-NPs under UV light. Determination of the antileishmanial effects of Ag-NPs is very important for the further development of new compounds containing nanoparticles in leishmaniasis treatment. PMID:22114501

  18. Seasonal changes in microbial community structure and nutrients content in rhizospheric soil of Aegle marmelos tree

    Directory of Open Access Journals (Sweden)

    Shital M. Patel

    2010-12-01

    Full Text Available A preliminary investigation was carried out on dominance of different types of microbial communities at different monsoon seasons in rhizospheric soils of Aegle marmelos tree. Nutrients content of soil were also determined simultaneously to correlate with the microbial population. Results show that the rhizosphere of Aegle marmelos contains gram-negative bacteria, Rhizobium, Azotobacter,Actinomycetes and Yeast and major plant nutrients and their count as well as dominance changes with moisture content in rhizosphere.Except actinomycetes all the microorganisms were found highest duringmonsoon season whereas in post-monsoon season Actinomycetes were dominant. Amount of water in rhizosphere soil also affects soil chemical properties. Soil pH, organic carbon, C:N ratio, available nitrogen and available phosphorus were recorded maximum in monsoon, whereas electrical conductivity and total nitrogen content were found maximum in post-monsoon.

  19. Interaction specificity between leaf-cutting ants and vertically transmitted Pseudonocardia bacteria

    DEFF Research Database (Denmark)

    Breum Andersen, Sandra; Yek, Sze Huei; Nash, David R.;

    2015-01-01

    Background: The obligate mutualism between fungus-growing ants and microbial symbionts offers excellent opportunities to study the specificity and stability of multi-species interactions. In addition to cultivating fungus gardens, these ants have domesticated actinomycete bacteria to defend garde...... mutual co-adaptation within a single ant population.......Background: The obligate mutualism between fungus-growing ants and microbial symbionts offers excellent opportunities to study the specificity and stability of multi-species interactions. In addition to cultivating fungus gardens, these ants have domesticated actinomycete bacteria to defend gardens...... against the fungal parasite Escovopsis and possibly other pathogens. Panamanian Acromyrmex echinatior leaf-cutting ants primarily associate with actinomycetes of the genus Pseudonocardia. Colonies are inoculated with one of two vertically transmitted phylotypes (Ps1 or Ps2), and maintain the same...

  20. Effects of fenpropimorph on bacteria and fungi during decomposition of barley roots

    DEFF Research Database (Denmark)

    Thirup, L.; Johnsen, K.; Torsvik, V.;

    2001-01-01

    in a concentration realistically achieved in field topsoil when using the recommended dose. Over a 56-day period we measured the length of active fungal hyphae, the abundance of total culturable bacteria, the abundance of two culturable subgroups relevant to the soil environment (hyphae-forming actinomycetes...... and non-treated root samples. The number of total culturable bacteria was significantly lowered by fenpropimorph at day 17 and stimulated at day 56, indicating a possible indirect effect of the fungicide on the culturable bacteria as a whole. Nevertheless, culturable Pseudomonas and actinomycetes were...... not affected. The succession of the two bacterial subgroups differed considerably, so, whereas Pseudomonas peaked in the early decomposition stages, actinomycetes were most abundant after 2 months, and on the very first sampling day. Thus, the present findings suggest a possible effect of fenpropimorph on soil...

  1. ATIBALA: AN OVERVIEW

    Directory of Open Access Journals (Sweden)

    S. B. GAIKWAD, G. KRISHNA MOHAN

    2013-09-01

    Full Text Available Abutilon indicum is known as „Atibala‟ in Sanskrit. Literally, „Ati‟ means very and „Bala‟ means powerful, referring to the properties of this plant as very powerful. A. indicum is a hairy herb or under shrub distributed throughout the tropica. In traditional systems of medicine, various plant parts such as roots, leaves, flowers, bark, seeds, and stems have been used as antioxidant, demulcent, laxative, diuretic, analgesic, anti-inflammatory, and antiulcer. The present review is therefore an effort to give the detailed survey of literature on its pharamcognosy, phytochemistry as well as traditional and pharmacological uses.

  2. Brachionidae (Rotifera: Monogononta de la albufera El Paraíso y el reporte de Brachionus ibericusen el Perú

    Directory of Open Access Journals (Sweden)

    Emily Toscano

    2013-12-01

    Full Text Available En este trabajo se reportan las especies de Brachionidae reconocidos en las muestras recogidas en octubre de 2010 en la albufera Laguna El Paraiso, Huacho (11°13' −11° 10'S, 77° 35' −77°40'W. Cinco especies fueron determinadas: Keratella tropica, Brachionus quadridentatus, B. urceolaris, B. angularis y B. ibericusCiros-Pérez 2001. Este último es un nuevo reporte para el Perú y amplía su distribución a nivel mundial.

  3. Leishmaniasis isoleret til larynx som årsag til kronisk laryngitis

    DEFF Research Database (Denmark)

    Kaltoft, Mikkel; Munch-Petersen, Helga Richert; Møller, Henrik

    2010-01-01

    Mucosal leishmaniasis is uncommon outside Central and South America, where it is commonly caused by Leishmania (L.) braziliensis. We present a case of isolated laryngeal leishmaniasis detected in a 78-year-old male, who presented with chronic hoarseness. Histologic examination of biopsies taken...... from the larynx showed L. amastigotes. An L.-specific indirect fluorescent antibody test was positive. Polymerase chain reaction showed infection with L. donovani, L. infantum or L. tropica, species which do not normally cause isolated mucosal infection. This is the first reported case from Scandinavia....

  4. Schistosomiasis research in Africa

    DEFF Research Database (Denmark)

    Utzinger, Jürg; Brattig, Norbert W.; Kristensen, Thomas K.

    2013-01-01

    and discuss its overarching goal, the interrelated objectives, establishment and running of a research node network across Africa, partnership configuration and modus operandi of the project. A collection of 25 articles is presented that are grouped into five main themes: molecular, biological, spatial......, social and cross-cutting issues pertaining to the epidemiology and control of schistosomiasis. We summarize key achievements made by CONTRAST, many of which are featured in this special issue of Acta Tropica. Together with an independent view put forth by an eminent schistosomiasis researcher...

  5. Taxonomy Icon Data: Western clawed frog [Taxonomy Icon

    Lifescience Database Archive (English)

    Full Text Available Western clawed frog Xenopus tropicalis Chordata/Vertebrata/Amphibia Xenopus_tropicalis_L.png Xenopus_tropica...lis_NL.png Xenopus_tropicalis_S.png Xenopus_tropicalis_NS.png http://biosciencedbc....jp/taxonomy_icon/icon.cgi?i=Xenopus+tropicalis&t=L http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Xenopus+tropical...is&t=NL http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Xenopus+tropical...is&t=S http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Xenopus+tropicalis&t=NS http://togodb.biosciencedbc.jp/togodb/view/taxonomy_icon_comment_en?species_id=137 ...

  6. Non-specific association between filamentous bacteria and fungus-growing ants.

    Science.gov (United States)

    Kost, Christian; Lakatos, Tanja; Böttcher, Ingo; Arendholz, Wolf-Rüdiger; Redenbach, Matthias; Wirth, Rainer

    2007-10-01

    Fungus-growing ants and their fungal cultivar form a highly evolved mutualism that is negatively affected by the specialized parasitic fungus Escovopsis. Filamentous Pseudonocardia bacteria occurring on the cuticle of attine ants have been proposed to form a mutualistic interaction with these ants in which they are vertically transmitted (i.e. from parent to offspring colonies). Given a strictly vertical transmission of Pseudonocardia, the evolutionary theory predicts a reduced genetic variability of symbionts among ant lineages. The aim of this study was to verify whether actinomycetes, which occur on Acromyrmex octospinosus leaf-cutting ants, meet this expectation by comparing their genotypic variability with restriction fragment length polymorphisms. Multiple actinomycete strains could be isolated from both individual ant workers and colonies (one to seven strains per colony). The colony specificity of actinomycete communities was high: Only 15% of all strains were isolated from more than one colony, and just 5% were present in both populations investigated. Partial sequencing of 16S ribosomal deoxyribonucleic acid of two of the isolated strains assigned both of them to the genus Streptomyces. Actinomycetes could also be isolated from workers of the two non-attine ant species Myrmica rugulosa and Lasius flavus. Sixty-two percent of the strains derived from attine ants and 80% of the strains isolated from non-attine ants inhibited the growth of Escovopsis. Our data suggest that the association between attine ants and their actinomycete symbionts is less specific then previously thought. Soil-dwelling actinomycetes may have been dynamically recruited from the environment (horizontal transmission), probably reflecting an adaptation to a diverse community of microbial pathogens. PMID:17541536

  7. Accumulation of radiocesium in wild mushrooms collected from a Japanese forest and cesium uptake by microorganisms isolated from the mushroom-growing soils

    Energy Technology Data Exchange (ETDEWEB)

    Kuwahara, Chikako [Chemistry Division, Kanagawa Prefectural Institute of Public Health, Chigasaki-shi, Kanagawa 253-0087 (Japan)]. E-mail: chika_kuwahara.u79v@pref.kanagawa.jp; Fukumoto, Atsushi [Department of Microbiology, School of Pharmaceutical Sciences, Toho University, Funabashi-shi, Chiba 274-8510 (Japan); Ohsone, Ayako [Department of Microbiology, School of Pharmaceutical Sciences, Toho University, Funabashi-shi, Chiba 274-8510 (Japan); Furuya, Nobutaka [Department of Microbiology, School of Pharmaceutical Sciences, Toho University, Funabashi-shi, Chiba 274-8510 (Japan); Shibata, Hisashi [Yamanashi Forestry and Forest Products Research Institute, Masuho-cho, Yamanashi 400-0515 (Japan); Sugiyama, Hideo [Department of Environmental Health, National Institute of Public Health, Minato-ku, Tokyo 108-8638 (Japan); Kato, Fumio [Department of Microbiology, School of Pharmaceutical Sciences, Toho University, Funabashi-shi, Chiba 274-8510 (Japan)

    2005-06-01

    Mushrooms and soils samples collected from a sub-alpine forest of Mt. Fuji in Japan were measured for {sup 137}Cs and stable Cs. The ranges of {sup 137}Cs specific activities and stable Cs concentrations in the mushrooms were 291-7950 Bq kg{sup -1} dry weight and 4.69-58.1 mg kg{sup -1} dry weight, respectively. Both {sup 137}Cs specific activities and stable Cs concentrations in the mushrooms were higher than those in common agricultural plants. The {sup 137}Cs specific activities and stable Cs concentrations in the soils were 3.18-149 Bq kg{sup -1} dry weight and 0.618-2.18 mg kg{sup -1} dry weight, respectively. The appearance frequencies of filamentous actinomycetes and planktonic bacteria from the soils decreased according to increasing Cs contents in the medium. No relationship was observed between the appearance frequencies of those and the stable Cs concentrations in the soils. The filamentous actinomycetes from any soil sample could not grow in the presence of 25 mM Cs, although the planktonic bacteria from the soil samples could grow with up to 50 mM Cs in YM agar. In addition, the planktonic bacteria from approximately 70% of the soil samples could grow even in the presence of 100 mM Cs. Filamentous actinomycetes were more sensitive to Cs than planktonic bacteria. In in vitro experiments, Cs uptake by these strains of filamentous actinomycetes and planktonic bacteria was high in the presence of 5 mM CsCl and the strains accumulated Cs, the same as in mushrooms. Our results indicate that filamentous actinomycetes in the soils have higher sensitivity to Cs than planktonic bacteria, and several strains of filamentous actinomycetes have a high Cs accumulation in the presence of 5 mM Cs.

  8. Ensaio para detectar bergapteno na casca e no caule de Brosimum gaudichaudii Trec através da produção de melanina em actinomicetos

    Directory of Open Access Journals (Sweden)

    M.L.P. Neves

    2002-01-01

    Full Text Available Plant extracts containing furocoumarins compounds were identified by using melanin producer strains of Nocardiopis sp (DAUFPE-361 and non producer strains of Streptomyces sp (DAUFPE-87. Ethanol, methanol and acetone extracted compounds from conduru (Brosimum gaudichaudii bark and stem were evaporated and added to tubes containing ISP7 medium (tyrosine agar. This medium was inoculated with spore suspension (10(6-10(7 CFU prepared from the different actinomycetes strains. The ethanol fraction (pH 9.0 from both bark and stem induced pigmentation in actinomycetes melanin non producer strains and increased the pigmentation in producer strains indicating presence of furocoumarins in the correspondent plant extracts.

  9. Sceliphrolactam, a polyene macrocyclic lactam from a wasp-associated Streptomyces sp

    DEFF Research Database (Denmark)

    Oh, Dong-Chan; Poulsen, Michael; Currie, Cameron R;

    2011-01-01

    A previously unreported 26-membered polyene macrocyclic lactam, sceliphrolactam, was isolated from an actinomycete, Streptomyces sp., associated with the mud dauber, Sceliphron caementarium. Sceliphrolactam's structure was determined by 1D- and 2D-NMR, MS, UV, and IR spectral analysis. Sceliphrol......A previously unreported 26-membered polyene macrocyclic lactam, sceliphrolactam, was isolated from an actinomycete, Streptomyces sp., associated with the mud dauber, Sceliphron caementarium. Sceliphrolactam's structure was determined by 1D- and 2D-NMR, MS, UV, and IR spectral analysis....... Sceliphrolactam displays antifungal activity against amphotericin B-resistant Candida albicans (MIC = 4 µg/mL, 8.3 µM)....

  10. Symbiont recognition of mutualistic bacteria by Acromyrmex leaf-cutting ants

    DEFF Research Database (Denmark)

    Zhang, Mingzi; Poulsen, Michael; Currie, Cameron R

    2007-01-01

    by an actinomycete bacterial mutualist (genus Pseudonocardia). Despite the potential of being infected by phylogenetically diverse strains of parasites, each ant colony maintains only a single Pseudonocardia symbiont strain, which is primarily vertically transmitted between colonies by the founding queens....... In this study, we show that Acromyrmex leaf-cutter ants are able to differentiate between their native actinomycete strain and a variety of foreign strains isolated from sympatric and allopatric Acromyrmex species, in addition to strains originating from other fungus-growing ant genera. The recognition...

  11. Antileishmanial, Toxicity, and Phytochemical Evaluation of Medicinal Plants Collected from Pakistan

    Directory of Open Access Journals (Sweden)

    Naseer Ali Shah

    2014-01-01

    Full Text Available Leishmaniasis is an important parasitic problem and is in focus for development of new drugs all over the world. Objective of the present study was to evaluate phytochemical, toxicity, and antileishmanial potential of Jurinea dolomiaea, Asparagus gracilis, Sida cordata, and Stellaria media collected from different areas of Pakistan. Dry powder of plants was extracted with crude methanol and fractionated with n-hexane, chloroform, ethyl acetate, n-butanol, and water solvents in escalating polarity order. Qualitative phytochemical analysis of different class of compounds, that is, alkaloids, saponins, terpenoids, anthraquinones, cardiac glycosides, coumarins, phlobatannins, flavonoids, phenolics, and tannins, was tested. Its appearance was observed varying with polarity of solvent used for fractionation. Antileishmanial activity was performed against Leishmania tropica KWH23 promastigote. Potent antileishmanial activity was observed for J. dolomiaea methanol extract (IC50=10.9±1.1 μg/mL in comparison to other plant extracts. However, J. dolomiaea “ethyl acetate fraction” was more active (IC50=5.3±0.2 μg/mL against Leishmania tropica KWH23 among all plant fractions as well as standard Glucantime drug (6.0±0.1 μg/mL. All the plants extract and its derived fraction exhibited toxicity in safety range (LC50 >100 in brine shrimp toxicity evaluation assay.

  12. Effect of human urine on cell cycle and infectivity of Leismania species promastigotes in vitro.

    Science.gov (United States)

    Allahverdiyev, Adil M; Bagirova, Melahat; Elcicek, Serhat; Koc, Rabia Cakir; Oztel, Olga N

    2011-10-01

    In vitro cultivation of Leishmania parasites plays an important role in diagnosis and treatment of leishmaniasis and in vaccine and drug development studies. Conversely, long-term cultivation of Leishmania parasites usually results in decreased infectivity potential. Some studies reported a stimulatory effect of human urine in Leishmania promastigotes. However, there is no information about the effects of urine within culture on the infectivity of Leishmania parasites. Analysis of the effect of urine have showed that proliferation indexes were significantly increased in culture medium supplemented with human urine (L. tropica = 38.17 ± 5.12, L. donovani = 34.74 ± 5.6, L. major = 34.22 ± 4.66, and L. infantum 35.88 ± 6.40) than in controls. Infection indexes were 13 ± 1.7 for L. tropica, 55 ± 2.2 for L. infantum, 41 ± 3.14 for L. donovani, and 49 ± 3.26 for L. major. Our results showed that human urine increased the infectivity and proliferation of Leishmania parasites. PMID:21976564

  13. Reproductive fitness and dietary choice behavior of the genetic model organism Caenorhabditis elegans under semi-natural conditions.

    Science.gov (United States)

    Freyth, Katharina; Janowitz, Tim; Nunes, Frank; Voss, Melanie; Heinick, Alexander; Bertaux, Joanne; Scheu, Stefan; Paul, Rüdiger J

    2010-10-01

    Laboratory breeding conditions of the model organism C. elegans do not correspond with the conditions in its natural soil habitat. To assess the consequences of the differences in environmental conditions, the effects of air composition, medium and bacterial food on reproductive fitness and/or dietary-choice behavior of C. elegans were investigated. The reproductive fitness of C. elegans was maximal under oxygen deficiency and not influenced by a high fractional share of carbon dioxide. In media approximating natural soil structure, reproductive fitness was much lower than in standard laboratory media. In seminatural media, the reproductive fitness of C. elegans was low with the standard laboratory food bacterium E. coli (γ-Proteobacteria), but significantly higher with C. arvensicola (Bacteroidetes) and B. tropica (β-Proteobacteria) as food. Dietary-choice experiments in semi-natural media revealed a low preference of C. elegans for E. coli but significantly higher preferences for C. arvensicola and B. tropica (among other bacteria). Dietary-choice experiments under quasi-natural conditions, which were feasible by fluorescence in situ hybridization (FISH) of bacteria, showed a high preference of C. elegans for Cytophaga-Flexibacter-Bacteroides, Firmicutes, and β-Proteobacteria, but a low preference for γ-Proteobacteria. The results show that data on C. elegans under standard laboratory conditions have to be carefully interpreted with respect to their biological significance.

  14. Current knowledge of sand fly fauna (Diptera: Psychodidae) of northwestern Yemen and how it relates to leishmaniasis transmission.

    Science.gov (United States)

    El Sawaf, Bahira M; Kassem, Hala A; Mogalli, Nabil M; El Hossary, Shabaan S; Ramadan, Nadia F

    2016-10-01

    This report presents the results of the first entomological survey of the sand fly fauna in northwestern Yemen. Sand flies were collected using sticky paper traps and CDC light traps from Hajjah governorate, a cutaneous leishmaniasis focus due to Leishmania tropica. Six Phlebotomus species: P. alexandri, P. arabicus. P. bergeroti, P. orientalis, P. papatasi, P. sergenti and ten Sergentomyia species: S. africana, S. antennata, S. christophersi, S. dolichopa, S. dreyfussi, S. fallax, S. multidens, S. taizi, S. tiberiadis, S. yusafi were identified. P. alexandri was the most predominant Phlebotomus species and P. papatasi was a scarce species. S. fallax was the principal Sergentomyia species and S. dolichopa was the least species encountered. The diversity of the sand fly fauna within and among three altitudinal ranges using Simpson index and Jaccard's diversity coefficient respectively were measured. High species diversity was found in all altitude ranges. There seemed to be more association between sand fly fauna in higher altitudes with fauna from moderate altitudes. Sand fly seasonal activity showed a mono-modal trend in the lowland and a confluent bimodal trend in the highlands. Leishmania DNA could not be detected from 150 Phlebotomus females using PCR-RFLP. A possible zoonotic cutaneous transmission cycle due to Leishmania tropica in northwestern Yemen would involve P. arabicus as the sand fly vector and the rock hyrax as the reservoir host. The vector competence for P. alexandri as a vector of visceral leishmaniasis in Hajjah governorate is discussed. PMID:27282094

  15. In Vitro and In Vivo Antileishmanial Activities of Pistacia vera Essential Oil.

    Science.gov (United States)

    Mahmoudvand, Hossein; Saedi Dezaki, Ebrahim; Ezatpour, Behrouz; Sharifi, Iraj; Kheirandish, Farnaz; Rashidipour, Marzieh

    2016-03-01

    This study aims to evaluate the in vitro and in vivo antileishmanial activities of Pistacia vera essential oil and compare their efficacy with a reference drug, meglumine antimoniate (Glucantime®). This essential oil (0-100 µg/mL) was evaluated in vitro against the intracellular amastigote forms of Leishmania tropica (MHOM/IR/2002/Mash2) and then tested on cutaneous leishmaniasis of male BALB/c mice by Leishmania major (MRHO/IR/75/ER). In the in vitro assay, it could be observed that P. vera essential oil significantly (p vera essential oil were limonene (26.21%), α-pinene (18.07%), and α-thujene (9.31%). It was also found that P. vera essential oil had no significant cytotoxic effect on J774 cells. The present study found that P. vera essential oil showed considerable in vitro and in vivo effectiveness against L. tropica and L. major compared to the reference drug. These findings also provided the scientific evidence that natural plants could be used in traditional medicine for the prevention and treatment of cutaneous leishmaniasis. PMID:26829519

  16. First molecular identification of Leishmania species in a new endemic area of cutaneous leishmaniasis in Lorestan, Iran

    Institute of Scientific and Technical Information of China (English)

    Farnaz Kheirandish; Ali Chegeni Sharafi; Bahram Kazemi; Mojgan Bandehpour; Mohamad javad Tarahi; Ali Khamesipour

    2013-01-01

    Objective:To identify Leishmania using PCR. Methods: This study was conducted from April 2009 to March 2011 in order to identify Leishmania species in a new endemic area of CL in Lorestan, Iran. Samples were taken from 62 patients that referred to the health centers in different cities of Lorestan province, the presence of Leishmania was confirmed using direct smear and then grown in NNN media and mass cultured in RPMI 1 640 medium supplemented with 10%heat-inactivated fetal bovine serum. DNA was extracted from cultured promastigotes and used in ITS-PCR. Results:45(72.6%) samples out of 62 showed a band in the range of 485 bp and 17 (27.4%) with a band in the range of 626 bp which were similar to standard strains of Leishmania tropica (L. tropica) and Leishmania major (L. major), respectively. 50 (65.80%) of samples were collected from people with no history of travel in at least a year prior to the onset which shows that indigenous source of infection. Conclusions:Since the vector and reservoir of the two species are different, so precise and extensive control and prevention methods should be designed and carried out.

  17. Infectious diseases of afghan immigrants in the united states: review of published reports

    International Nuclear Information System (INIS)

    Infectious diseases of immigrants may differ from patients born and resident in the same country, especially if immigrants from Africa or Asia live in Europe or North America. Because the available information is limited published reports of infections of Afghan immigrants in the United States and other countries were analysed. Four reports from the US and 15 reports from other countries were identified [7, (46.7%) Pakistan, 5 (33.3%) Iran, 1 (6.7%) United Kingdom, 1 (6.7%) Germany, 1 (6.7%) Israel)]. Reports from the US were case reports or case series of infections with gastro-intestinal parasites and Mycobacterium tuberculosis (1, 25%), Echinococcus species (2, 50%), and Plasmodium vivax (1, 25%). Reports from other countries were case reports, case series, or surveys and investigated infections with Echinococcus species (2, 13%), Hepatitis B virus (HBV) (1, 6.7%), M. tuberculosis (6, 40%), P. falciparum (1, 6.7%), Leishmania tropica (3, 20%), Fasciola hepatica (1, 6.7%), and M. leprae (1, 6.7%). The reports suggest that Echinococcus species and L. tropica infections can be encountered in Afghan immigrants in the US, and the frequency of a positive PPD (purified protein derivative) response or HBsAg test was increased. An infectious diseases database specific for the country of residence readily available to clinicians treating Afghan patients outside of Afghanistan may be useful. (author)

  18. [Effect of organic acids on the biosynthesis of carotenes by an Actinomyces chrysomallus strain].

    Science.gov (United States)

    Nefelova, M V; Sverdlova, A N; Alekseeva, L N

    1978-01-01

    Synthesis of carotenes by Actinomyces chrysomallus var. carotenoides was stimulated by citric, acetic, oxalacetic, fumaric, succinic, malic, alpha-ketoglutaric, tartaric, pyruvic, and propionic acids. Acetic acid acts as a precursor of carotene synthesis and also has another stimulating mechanism of action on carotenogenesis of the actinomycete. Acetic, furmaric, malic, succinic, and alpha-ketoglutaric acids stimulate cyclization of lycopene yielding beta-carotene.

  19. Martinomycin, a new polyether antibiotic produced by Streptomyces salvialis. I. Taxonomy, fermentation and biological activity.

    Science.gov (United States)

    Bernan, V S; Montenegro, D A; Goodman, J J; Alluri, M R; Carter, G T; Abbanat, D R; Pearce, C J; Maiese, W M; Greenstein, M

    1994-12-01

    Actinomycete culture LL-D37187 has been found to produce the new polyether antibiotic martinomycin. Taxonomic studies, including morphological, physiological, and cell wall chemistry analyses, revealed that culture LL-D37187 is a novel streptomycete species, and the proposed name is Streptomyces salvialis. Martinomycin exhibits activity against the Southern Army Worm (Spodoptera eridania) and Gram-positive bacteria. PMID:7844037

  20. Industrial Microorganisms.

    Science.gov (United States)

    Phaff, Herman J.

    1981-01-01

    Describes industrially important yeasts, molds, bacteria, and actinomycetes. Discussed in detail are microbial products, such as primary metabolites, secondary metabolites, enzymes, and capsular polysaccharides. Traces the historical background of human cell culture, mentioning recombinant DNA research and hybridization of normal mammalian cells…

  1. Systems Biology Approaches to Understand Natural Products Biosynthesis

    Science.gov (United States)

    Licona-Cassani, Cuauhtemoc; Cruz-Morales, Pablo; Manteca, Angel; Barona-Gomez, Francisco; Nielsen, Lars K.; Marcellin, Esteban

    2015-01-01

    Actinomycetes populate soils and aquatic sediments that impose biotic and abiotic challenges for their survival. As a result, actinomycetes metabolism and genomes have evolved to produce an overwhelming diversity of specialized molecules. Polyketides, non-ribosomal peptides, post-translationally modified peptides, lactams, and terpenes are well-known bioactive natural products with enormous industrial potential. Accessing such biological diversity has proven difficult due to the complex regulation of cellular metabolism in actinomycetes and to the sparse knowledge of their physiology. The past decade, however, has seen the development of omics technologies that have significantly contributed to our better understanding of their biology. Key observations have contributed toward a shift in the exploitation of actinomycete’s biology, such as using their full genomic potential, activating entire pathways through key metabolic elicitors and pathway engineering to improve biosynthesis. Here, we review recent efforts devoted to achieving enhanced discovery, activation, and manipulation of natural product biosynthetic pathways in model actinomycetes using genome-scale biological datasets. PMID:26697425

  2. Plant genes involved in the establishment of an actinorhizal symbiosis.

    NARCIS (Netherlands)

    Ribeiro, A.I.F.

    1997-01-01

    Actinorhizal multilobe nodules are induced by actinomycetes of the genus Frankia on the roots of several dicotyledenous species belonging to eight different plant families. Each nodule lobe is a modified lateral root, without a root cap, with a central vascular cylinder, and with infected and uninfe

  3. Interaction specificity between leaf-cutting ants and vertically transmitted Pseudonocardia bacteria

    DEFF Research Database (Denmark)

    Breum Andersen, Sandra; Yek, Sze Huei; Nash, David R.;

    2015-01-01

    Background: The obligate mutualism between fungus-growing ants and microbial symbionts offers excellent opportunities to study the specificity and stability of multi-species interactions. In addition to cultivating fungus gardens, these ants have domesticated actinomycete bacteria to defend gardens...

  4. Vanillin Catabolism in Rhodococcus jostii RHA1

    OpenAIRE

    Chen, Hao-Ping; Chow, Mindy; Liu, Chi-Chun; Lau, Alice; Liu, Jie; Eltis, Lindsay D.

    2012-01-01

    Genes encoding vanillin dehydrogenase (vdh) and vanillate O-demethylase (vanAB) were identified in Rhodococcus jostii RHA1 using gene disruption and enzyme activities. During growth on vanillin or vanillate, vanA was highly upregulated while vdh was not. This study contributes to our understanding of lignin degradation by RHA1 and other actinomycetes.

  5. Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils.

    Science.gov (United States)

    Nouioui, Imen; Beauchemin, Nicholas; Cantor, Michael N; Chen, Amy; Detter, J Chris; Furnholm, Teal; Ghodhbane-Gtari, Faten; Goodwin, Lynne; Gtari, Maher; Han, Cliff; Han, James; Huntemann, Marcel; Hua, Susan Xinyu; Ivanova, Natalia; Kyrpides, Nikos; Markowitz, Victor; Mavrommatis, Kostas; Mikhailova, Natalia; Nordberg, Henrik P; Ovchinnikova, Galina; Pagani, Ioanna; Pati, Amrita; Sen, Arnab; Sur, Saubashya; Szeto, Ernest; Thakur, Subarna; Wall, Luis; Wei, Chia-Lin; Woyke, Tanja; Tisa, Louis S

    2013-01-01

    Members of the actinomycete genus Frankia form a nitrogen-fixing symbiosis with 8 different families of actinorhizal plants. We report a draft genome sequence for Frankia sp. strain BMG5.12, a nitrogen-fixing actinobacterium isolated from Tunisian soils with the ability to infect Elaeagnus angustifolia and Myrica gale. PMID:23846272

  6. Draft Genome Sequence of Frankia sp. Strain CcI6, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Casuarina cunninghamiana.

    Science.gov (United States)

    Mansour, Samira R; Oshone, Rediet; Hurst, Sheldon G; Morris, Krystalynne; Thomas, W Kelley; Tisa, Louis S

    2014-01-01

    Members of the actinomycete genus Frankia form a nitrogen-fixing symbiosis with 8 different families of actinorhizal plants. We report a 5.57-Mbp draft genome sequence for Frankia sp. strain CcI6, a salt-tolerant nitrogen-fixing actinobacterium isolated from root nodules of Casurina cunninghamiana grown in Egyptian soils. PMID:24435877

  7. Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida.

    Science.gov (United States)

    Sen, Arnab; Beauchemin, Nicholas; Bruce, David; Chain, Patrick; Chen, Amy; Walston Davenport, Karen; Deshpande, Shweta; Detter, Chris; Furnholm, Teal; Ghodbhane-Gtari, Faten; Goodwin, Lynne; Gtari, Maher; Han, Cliff; Han, James; Huntemann, Marcel; Ivanova, Natalia; Kyrpides, Nikos; Land, Miriam L; Markowitz, Victor; Mavrommatis, Kostas; Nolan, Matt; Nouioui, Imen; Pagani, Ioanna; Pati, Amrita; Pitluck, Sam; Santos, Catarina L; Sur, Saubashya; Szeto, Ernest; Tavares, Fernando; Teshima, Hazuki; Thakur, Subarna; Wall, Luis; Woyke, Tanja; Wishart, Jessie; Tisa, Louis S

    2013-01-01

    Members of the actinomycete genus Frankia form a nitrogen-fixing symbiosis with 8 different families of actinorhizal plants. We report a high-quality draft genome sequence for Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from root nodules of Alnus nitida. PMID:23516220

  8. Draft Genome sequence of Frankia sp. Strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida

    Energy Technology Data Exchange (ETDEWEB)

    Sen, Arnab [University of North Bengal, Siliguri, India; Beauchemin, Nicholas [University of New Hampshire; Bruce, David [Los Alamos National Laboratory (LANL); Chain, Patrick S. G. [Lawrence Livermore National Laboratory (LLNL); Chen, Amy [U.S. Department of Energy, Joint Genome Institute; Davenport, Karen W. [Los Alamos National Laboratory (LANL); Deshpande, Shweta [U.S. Department of Energy, Joint Genome Institute; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Furnholm, Teal [University of New Hampshire; Ghodhbane-Gtari, Faten [University of New Hampshire; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Gtari, Maher [University of New Hampshire; Han, James [U.S. Department of Energy, Joint Genome Institute; Huntemann, Marcel [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Markowitz, Victor [U.S. Department of Energy, Joint Genome Institute; Mavromatis, K [U.S. Department of Energy, Joint Genome Institute; Nolan, Matt [U.S. Department of Energy, Joint Genome Institute; Nouioui, Imen [University of Tunis-El Manar, Tunisia; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Pati, Amrita [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Santos, Catarina [Instiuto Celular e Aplicada, Portugal; Sur, Saubashya [University of North Bengal, Siliguri, India; Szeto, Ernest [U.S. Department of Energy, Joint Genome Institute; Tavares, Fernando [Instiuto Celular e Aplicada, Portugal; Teshima, Hazuki [Los Alamos National Laboratory (LANL); Thakur, Subarna [University of North Bengal, Siliguri, India; Wall, Luis [University of Quilmes, Argentina; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Wishart, Jessie [University of New Hampshire; Tisa, Louis S. [University of New Hampshire

    2013-01-01

    Members of actinomycete genus Frankia form a nitrogen-fixing symbiosis with 8 different families of actinorhizal plants. We report a high-quality draft genome sequence for Frankia sp. stain QA3, a nitrogen-fixing actinobacterium isolated from root nodules of Alnus nitida.

  9. Draft Genome Sequence of Frankia sp. Strain CcI6, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Casuarina cunninghamiana

    OpenAIRE

    Mansour, Samira R.; Oshone, Rediet; Hurst, Sheldon G.; Morris, Krystalynne; Thomas, W Kelley; Tisa, Louis S.

    2014-01-01

    Members of the actinomycete genus Frankia form a nitrogen-fixing symbiosis with 8 different families of actinorhizal plants. We report a 5.57-Mbp draft genome sequence for Frankia sp. strain CcI6, a salt-tolerant nitrogen-fixing actinobacterium isolated from root nodules of Casurina cunninghamiana grown in Egyptian soils.

  10. Phytopathogenic Bacteria

    NARCIS (Netherlands)

    Wolf, van der J.M.; Boer, de S.H.

    2015-01-01

    A few hundred bacterial species, belonging to the Proteobacteria, Mollecutes and Actinomycetes cause a large number of different plant diseases, some of which are devastating for agricultural crops. Symptoms of bacterial plant diseases are diverse and include necrosis, tissue maceration, wilting, an

  11. Metabolomic Characterization of the Salt Stress Response in Streptomyces coelicolor

    NARCIS (Netherlands)

    Kol, Stefan; Merlo, M. Elena; Scheltema, Richard A.; de Vries, Marcel; Vonk, Roel J.; Kikkert, Niels A.; Dijkhuizen, Lubbert; Breitling, Rainer; Takano, Eriko

    2010-01-01

    The humicolous actinomycete Streptomyces coelicolor routinely adapts to a wide variety of habitats and rapidly changing environments. Upon salt stress, the organism is also known to increase the levels of various compatible solutes. Here we report the results of the first high-resolution metabolomic

  12. Assessing Off-Flavor in Fish Tissue

    Science.gov (United States)

    Geosmin (GSM) and 2-methylisoborenol (2MIB) are two metabolites generated by microorganisms, such as cyanobacteria and actinomycetes. They possess dirt like odors and can be detected at very low concentrations (sub parts per billion) by the human nose. Their presence in water creates a problem for...

  13. Evaluation of depuration procedures to mitigate off-flavor from harvest size Atlantic Salmon Salmo Salar cultured in a land-based recirculating aquaculture system

    Science.gov (United States)

    Fish cultured within water recirculating aquaculture systems (RAS) can develop “earthy” or “musty” off-flavors in their flesh due to the bioaccumulation of the compounds geosmin and 2-methylisoborenol (MIB), respectively, that are produced by certain bacteria (e.g., actinomycetes). These bacteria an...

  14. Functional annotation and characterization of 3-hydroxybenzoate 6-hydroxylase from Rhodococcus jostii RHA1

    NARCIS (Netherlands)

    Montersino, S.; Berkel, van W.J.H.

    2012-01-01

    The genome of Rhodococcus jostii RHA1 contains an unusually large number of oxygenase encoding genes. Many of these genes have yet an unknown function, implying that a notable part of the biochemical and catabolic biodiversity of this Gram-positive soil actinomycete is still elusive. Here we present

  15. Contents of heavy metals and micro-flora in some soils of Mt. Stara Planina

    OpenAIRE

    Belanović Snežana; Knežević Milan; Miličić Bogić M.; Đorović Miroljub

    2004-01-01

    This paper presents the contents of heavy metals (Cu, Zn, Ni, Cr and Pb) under forest and grass cover (pasture) in studied soils of Mt. Stara Planina, locality Javor. Microbiological analysis includes the total contents of microorganisms, actinomycetes and fungi, as well as the content of physiological groups of microorganisms important for the decomposition and transformation of organic matter.

  16. A feasibility study on the use of near infrared spectroscopy for the authentication of depurated salmon fillets

    Science.gov (United States)

    Some species of actinomycetes, fungi, and bluegreen algae produce semivolatile off-flavor compounds responsible for earthy-musty odorants in water from aquaculture facilities and tend to bioaccumulate within fish flesh. Although these off-flavor compounds are harmless to human health, high levels wi...

  17. De Novo Whole-Genome Sequence of Micromonospora carbonacea JXNU-1 with Broad-Spectrum Antimicrobial Activity, Isolated from Soil Samples

    OpenAIRE

    Jiang, Yun; Huang, Yun-hong; Long, Zhong-er

    2015-01-01

    Micromonospora carbonacea JXNU-1 is an actinomycete with broad-spectrum antimicrobial activity, isolated from soil samples from the farmland in the area of Yaohu Lake in Nanchang, China. Here, we report the whole-genome sequence of M. carbonacea JXNU-1.

  18. EFFECTS OF CARBON SOURCE TO RESISTANCE OF HEAVY METALS OF OIL-DESTUCTIVE STRAINS ACTINOBACTERIA USED FOR BIOREMEDIATION Влияние источника углерода на устойчивость к тяжёлым металлам штаммов нефтеокисляющих актинобактерий, используемых в процессах биоремедиации

    Directory of Open Access Journals (Sweden)

    Khudokormov A. A.

    2012-11-01

    Full Text Available We studied the resistance of the eight strains of oil-destructive actinomycetes, isolated from the oil-contaminated ecosystems to heavy metal salts when cultivatiwng with different carbon sources. Furthermore we researched feasibility to use those microorganisms for bioremediation of oil- contaminated sites with high level of heavy metals

  19. Pharmaceutical compositions and methods for treating tuberculosis

    NARCIS (Netherlands)

    van der Geize, Robert; Dijkhuizen, Lubbert; Ostendorf, Martin; van der Meijden, Peter

    2010-01-01

    A pharmaceutical composition for the treatment of a disease caused by a bacterium that belongs to the group of nocardioform actinomycetes, said composition comprising an effective amount of a compound selected from compound I, (+)-compound II, (-)- compound II, compound III, or mixtures thereof.

  20. Substrate uptake, phosphorus repression, and effect of seed culture on glycopeptide antibiotic production

    DEFF Research Database (Denmark)

    Maiti, Soumen K.; Singh, Kamaleshwar P.; Eliasson Lantz, Anna;

    2010-01-01

    Actinomycetes, the soil borne bacteria which exhibit filamentous growth, are known for their ability to produce a variety of secondary metabolites including antibiotics. Industrial scale production of such antibiotics is typically carried out in a multi-substrate medium where the product formation...

  1. A life-threatening case of disseminated nocardiosis due to Nocardia brasiliensis

    Directory of Open Access Journals (Sweden)

    Elisabeth Paramythiotou

    2012-01-01

    Full Text Available Nocardiosis is a rare disease caused by infection with Nocardia species, aerobic actinomycetes with a worldwide distribution. A rare life-threatening disseminated Nocardia brasiliensis infection is described in an elderly, immunocompromised patient. Microorganism was recovered from bronchial secretions and dermal lesions, and was identified using molecular assays. Prompt, timely diagnosis and appropriate treatment ensured a favorable outcome.

  2. Diversity and frequency of Nocardia spp. in the soil of Isfahan province, Iran

    Directory of Open Access Journals (Sweden)

    R Kachuei

    2012-06-01

    Conclusions: N. asteroids complex is more prevalent in Isfahan province and soil can be a potential source of nocardiosis infections. It is to be considering that climate and soil pH are involved in the frequency and diversity of aerobic Actinomycetes.

  3. Production of the glycopeptide antibiotic A40926 by Nonomuraea sp ATCC 39727: influence of medium composition in batch fermentation

    DEFF Research Database (Denmark)

    Gunnarsson, Nina; Bruheim, Per; Nielsen, Jens

    2003-01-01

    Nonomuraea sp. ATCC 39727 is a novel actinomycete species and the producer of A40926, a glycopeptide antibiotic structurally similar to teichoplanin. In the present study, a defined minimal medium was designed for Nonomuraea fermentation. The influence of initial phosphate, glucose and ammonium...

  4. Establishing a high throughput method for medium optimization – a case study using Streptomyces lividans as host for production of heterologous protein

    DEFF Research Database (Denmark)

    Rattleff, Stig; Thykaer, Jette; Lantz, Anna Eliasson

    2012-01-01

    Actinomycetes are widely known for production of antibiotics, though as hosts for heterologous protein expression they show great potential which should be further developed. Streptomyces lividans is especially interesting due to very low endogenous protease activity and the capability to secrete...

  5. Symbiotic and nonsymbiotic hemoglobin genes of Casuarina glauca

    DEFF Research Database (Denmark)

    Jacobsen-Lyon, K; Jensen, Erik Østergaard; Jørgensen, Jan-Elo;

    1995-01-01

    Casuarina glauca has a gene encoding hemoglobin (cashb-nonsym). This gene is expressed in a number of plant tissues. Casuarina also has a second family of hemoglobin genes (cashb-sym) expressed at a high level in the nodules that Casuarina forms in a nitrogen-fixing symbiosis with the actinomycete...

  6. Cell factories for a sustainable world

    DEFF Research Database (Denmark)

    Kindtler, Jens William

    2016-01-01

    chemicals, fine and specialty chemicals, nutritional supplements. CFB has ongoing research/development activities in the field of: 1. Providing upgraded CHO cells for production of therapeutic proteins and mAb’s, 2. Actinomycetes research program within discovery of natural compounds that are broad...

  7. Domain V of 23S rRNA contains all the structural elements necessary for recognition by the ErmE methyltransferase

    DEFF Research Database (Denmark)

    Vester, B; Douthwaite, S

    1994-01-01

    The ErmE methyltransferase from the erythromycin-producing actinomycete Saccharopolyspora erythraea dimethylates the N-6 position of adenine 2058 in domain V of 23S rRNA. This modification confers resistance to erythromycin and to other macrolide, lincosamide, and streptogramin B antibiotics. We...

  8. Medium-term response of microbial community to rhizodeposits of white clover and ryegrass and tracing of active processes induced by 13C and 15N labelled exudates

    DEFF Research Database (Denmark)

    Kusliene, Gedrime; Rasmussen, Jim; Kuzyakov, Yakov;

    2014-01-01

    and actinomycetes was unaffected by plant species, but pool of Gram-negative and Gram-positive bacteria was greater under white clover at the 10 percent significance level. In the short term, microorganisms more actively utilised fresh exudates (13C-labelled) of ryegrass than of white clover. We expected ryegrass...

  9. Soil nitrogen status as a regulator of carbon substrate flows through microbial communities with elevated CO2

    Science.gov (United States)

    Ziegler, Susan E.; Billings, Sharon A.

    2011-03-01

    To assess how microbial processing of organic C inputs to forest soils may be influenced by elevated CO2 and altered N dynamics, we followed the fate of 13C-labeled substrates in soils from the Duke Free Air Carbon Enrichment site where differences in soil N status have been imposed by 7 years of N amendments. Heterotrophic respiration and δ13C of respired CO2-C and phospholipid fatty acids (PLFA) were measured to track activities of microbial groups and estimate a relative measure of substrate use efficiency (PLFA-based SUE). Results indicate an increased proportion of fungal and actinomycete activity in elevated CO2 soils, which varied with substrate. The negative effect of N on vanillin phenolic-C incorporation into actinomycete PLFA suggests legacies of fertilization can mitigate increased C flow into actinomycetes with elevated CO2. Further, the fourfold increase in PLFA-based SUE for vanillin phenolic-C in elevated CO2 soils that received N suggests future enhanced N limitation in elevated CO2 soils may promote enhanced respiratory loss relative to incorporation of some C-substrates into microbial biomass. These short-term incubations did not reveal greater loss of soil organic carbon via respiration or shifts in SUE with elevated CO2. However, observed relative increases in activity of actinomycetes and fungi with elevated CO2 and mitigation of this effect on actinomycetes with N amendments suggests that elevated CO2 and predicted N limitation may alter the fate of slow-turnover soil organic matter (SOM) in two competing ways. Investigations need to focus on how these microorganisms may increase slow-turnover substrate use while possibly enhancing the prevalence of microbial cell wall structures that can serve as precursors of stabilized SOM.

  10. ANTI-OXIDANT AND ENZYME-INHIBITORY POTENTIAL OF MARINE STREPTOMYCES

    Directory of Open Access Journals (Sweden)

    K. Suthindhiran

    2013-01-01

    Full Text Available Marine actinomycetes are potential source for the discovery of novel compounds and enzymes. Though extensive research on marine actinomycetes is underway globally, the actinomycetes research from Indian marine ecosystem is unexplored and understudied. Hence, the present research is focussed on the screening of bioactive compounds from marine actinomycetes isolated from Indian coastal region. This study is designed to determine the antioxidant and enzyme inhibitory potential of Streptomyces sp. VITMSS05 strain, isolated from Marakkanam, southern coast of India. An actinomycetes strain designated as VITMSS05 was isolated. This strain was cultivated in Starch Caesin Agar medium (SCA supplemented with sea water. The cultural, morphological and molecular characterization was determined for the isolate. The crude extract of the isolate was extracted with ethyl acetate. Antioxidant activity of the crude extract was determined by DPPH radical scavenging assay. Alpha amylase and alpha glucosidase inhibitory potential of the extract was determined. Based on the phenotypic and phylogenetic analysis the strain was identified as Streptomyces sp. Significant antioxidant activity of the extract was observed with an IC50 value of 92.49 μg mL-1. The extract shows 64.1% inhibition on α-amylase and 91.5% inhibition on α-glucosidase at 100 μg mL-1 with an IC50 value of 385.97 and 42.89 μg mL-1. From the results it is evident that the ethyl acetate extract of Streptomyces sp. VITMSS05 has potent antioxidant and enzyme inhibitory activity in vitro. The combined effect of free radical scavenging and enzyme inhibition makes it a potent anti diabetic drug.

  11. Field released transgenic papaya effect on soil microbial communities and enzyme activities

    Institute of Scientific and Technical Information of China (English)

    WEI Xiang-dong; ZOU Hui-ling; CHU Lee-min; LIAO Bin; YE Chang-min; LAN Chong-yu

    2006-01-01

    Soil properties, microbial communities and enzyme activities were studied in soil amended with replicase (RP)-transgenic or non-transgenic papaya under field conditions. Compared with non-transgenic papaya, significant differences (P<0.05) were observed in total nitrogen in soils grown with transgenic papaya. There were also significant differences (P<0.05) in the total number of colony forming units (CFUs) of bacteria, actinomycetes and fungi between soils amended with RP-transgenic plants and non-transgenic plants. Compared with non-transgenic papaya, the total CFUs of bacteria, actinomycetes and fungi in soil with transgenic papaya increased by 0.43-1.1, 0.21-0.80 and 0.46-0.73 times respectively. Significantly higher (P<0.05) CFUs of bacteria, actinomycetes and fungi resistant to kanamycin (Km) were obtained in soils with RP-transgenic papaya than those with non-transgenic papaya in all concentrations of Km. Higher resistance quotients for Kmr (kanam ycin resistant) bacteria, actinomycetes and fungi were found in soil planted with RP-transgenic papaya, and the resistance quotients for KTr bacteria, actinomycetes and fungi in soils with transgenic papaya increased 1.6-4.46, 0.63-2.5 and 0.75-2.30 times. RP-transgenic papaya and non-transgenic papaya produced significantly different enzyme activities in arylsulfatase (5.4-5.9x), polyphenol oxidase (0.7-1.4x), invertase (0.5-0.79x), cellulase (0.23-0.35x) and phosphodiesterase (0.16-0.2x). The former three soil enzymes appeared to be more sensitive to the transgenic papaya than the others, and could be useful parameters in assessing the effects of transgenic papaya.Transgenic papaya could alter soil chemical properties, enzyme activities and microbial communities.

  12. Stage-specific adhesion of Leishmania promastigotes to sand fly midguts assessed using an improved comparative binding assay.

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    Raymond Wilson

    Full Text Available BACKGROUND: The binding of Leishmania promastigotes to the midgut epithelium is regarded as an essential part of the life-cycle in the sand fly vector, enabling the parasites to persist beyond the initial blood meal phase and establish the infection. However, the precise nature of the promastigote stage(s that mediate binding is not fully understood. METHODOLOGY/PRINCIPAL FINDINGS: To address this issue we have developed an in vitro gut binding assay in which two promastigote populations are labelled with different fluorescent dyes and compete for binding to dissected sand fly midguts. Binding of procyclic, nectomonad, leptomonad and metacyclic promastigotes of Leishmania infantum and L. mexicana to the midguts of blood-fed, female Lutzomyia longipalpis was investigated. The results show that procyclic and metacyclic promastigotes do not bind to the midgut epithelium in significant numbers, whereas nectomonad and leptomonad promastigotes both bind strongly and in similar numbers. The assay was then used to compare the binding of a range of different parasite species (L. infantum, L. mexicana, L. braziliensis, L. major, L. tropica to guts dissected from various sand flies (Lu. longipalpis, Phlebotomus papatasi, P. sergenti. The results of these comparisons were in many cases in line with expectations, the natural parasite binding most effectively to its natural vector, and no examples were found where a parasite was unable to bind to its natural vector. However, there were interesting exceptions: L. major and L. tropica being able to bind to Lu. longipalpis better than L. infantum; L. braziliensis was able to bind to P. papatasi as well as L. major; and significant binding of L. major to P. sergenti and L. tropica to P. papatasi was observed. CONCLUSIONS/SIGNIFICANCE: The results demonstrate that Leishmania gut binding is strictly stage-dependent, is a property of those forms found in the middle phase of development (nectomonad and leptomonad

  13. Cenotes (sinkholes) of the Yucatan Peninsula, Mexico, as a habitat of adult trematodes of fish.

    Science.gov (United States)

    Scholz, T; Vargas-Vázquez, J; Moravec, F; Vivas-Rodríguez, C; Mendoza-Franco, E

    1995-01-01

    Examination of a total of 581 fish specimens of 15 species from 39 cenotes (sinkholes) in the Yucatan Peninsula, southeastern Mexico, revealed the presence of 10 species of adult trematodes. These were as follows: Saccocoelioides sogandaresi Lumsden, 1963, Saccocoelioides sp. (family Haploporidae), Cichlasotrema ujati Pineda et Andrade, 1989 (Angiodictyidae), Crassicutis cichlasomae Manter, 1936 (Homalometridae), Magnivitellinum simplex Kloss, 1966 (Macroderoididae), Stunkardiella minima (Stunkard, 1938) (Acanthostomidae), Oligogonotylus manteri Watson, 1976 (Cryptogonimidae), Genarchella tropica (Manter, 1936), G. astyanactis (Watson, 1976), and G. isabellae (Lamothe-Argumedo, 1977) (Derogenidae). Saccocoelioides sogandaresi is reported from Mexico for the first time. Poecilia velifera and P. latipunctata for S. sogandaresi, Cichlasoma octofasciatum for C. cichlasomae, Cichlasoma friedrichstahli and C. meeki for O. manteri, and C. meeki, C. octofasciatum and Gobiomorus dormitor for G. isabellae represent new host records. Most species found are described and figured and their host range and distribution are discussed. PMID:9599426

  14. Zooplankton Responses In A Tropical System With Environmental Stress

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    Nelson Javier Aranguren Riaño

    2014-03-01

    Full Text Available Processes of environmental transformation that currently occur in the climatic change context generate changes in ecosystems and biological communities. ¿How populations respond to these stressors? ¿what effects could occur on taxonomic and ecological diversity? The taxonomic composition and structure of the zooplankton was analyzed with relationship to environmental changes in a tropical water reservoir located at 6º02`18``N and 73º29`16`` W. During four months, samples were taken weekly covering stations of low, medium, and high precipitation. A high degree of temporal variability was established, it associated with a short hydraulic retention time estimated at 8 days.  Nine species were collected, of which Keratella tropica tropica and Thermocyclops decipiens were the two most abundant and constant species. Found values of H’ diversity and S richness were considered low, corresponding to a little mature community associated with a fluctuating physical environment and supported by high variation coefficients of electrical conductivity and Sechhi disk transparency. Drastic variations on the system volume in short time lapses generate important changes in the physical expression of system with a direct effect on composition and structure of the zooplankton. In general, the response model of the zooplankton in the reservoir according to the statement by the intermediate disturbance hypothesis.  RESPUESTAS DEL ZOOPLANCTON EN UN SISTEMA TROPICAL CON ALTA TENSIÓN AMBIENTAL Los procesos de transformación ambiental que se dan en la actualidad, en un marco de cambio climático, generan modificaciones en los ecosistemas y comunidades biológicas, ¿Cómo responden las poblaciones a estos factores de tensión? ¿Qué efectos se darían sobre la diversidad taxonómica y ecológica? Se analizó la variación de la composición taxonómica y estructura del zooplancton en función de los cambios ambientales en un reservorio tropical ubicado a 6º

  15. Cutaneous Leishmaniasis with HIV.

    Science.gov (United States)

    Talat, Humaira; Attarwala, Sharmeen; Saleem, Mubasshir

    2014-05-01

    Cutaneous Leishmaniasis (CL) is a vector borne disease caused by various species of the Leishmania parasite. CL is endemic in the province of Balochistan in Pakistan. In certain instances a Human Immunodeficiency Virus (HIV)-related immunocompromised is associated with atypical clinical presentation and occurrence of reactivated lesions of CL. Such presentations respond poorly to the standard treatment and frequent relapses are noted. We are reporting three cases of localized and disseminated CL due to Leishmania tropica which responded to meglumine antimoniate. Due to the fact that CL is endemic in Balochistan, we did not consider HIV infection as a causative organism. It was their presentation with history of weight loss and fever that prompted Enzyme-linked Immunosorbent Assay (ELISA) tests for HIV, which turned out to be positive. CL is becoming visible as an opportunistic infection associated with HIV/AIDS and may even be the first symptom in HIV positive patients in an endemic area.

  16. Treatment Approaches for Cutaneous Leishmaniasis

    Directory of Open Access Journals (Sweden)

    Sema Aytekin

    2009-06-01

    Full Text Available Cutaneous leishmaniasis (CL is a widespread tropical infection caused by numerous different species of Leishmania protozoa. In our country, CL is due frequently to L. major and L. tropica. Its clinical presentation is extremely diverse. Treatment of CL aims to prevent mucosal invasion, to accelerate the healing of skin lesions, and avoid disfiguring scar. Local and physical treatment modalities including topical paromomycin, cryotherapy, localized controlled heat, carbon dioxide laser therapy, or pentavalant antimonals can be effective against. Intralesional antimonals are still the drug of choice may patients. WHO recommends an injection of drug under edges of the lesions and the entire lesion until the surface has blanched. Parenteral antimonials are useful for large, persistent or recurrent lesions. Combinations with other drugs such as allopurinol, pentoxifylline must be used for antimony unresponsive lesions.

  17. 不同种株利什曼原虫抗原的多样性研究%Preliminary study of the antigenic diversity of different Leishmania spp.

    Institute of Scientific and Technical Information of China (English)

    王健; 张仁刚; 张洁; 敬保迁

    2013-01-01

    Objective To investigate the antigenic diversity of different Leishmania spp.Methods Leishmania donovani,Leishmania tropica,and Leishmania infantum promastigotes were cultured and transformed into amastigotes in vitro.Total protein from the promastigotes and amastigotes was separated with SDS-PAGE,and antigenic diversity was identified using polyclonal serum against L.donovani promastigotes and L.tropica promastigotes in Western blotting.Results Following SDS-PAGE electrophoresis and Coomassie brilliant blue staining,the total protein of different Leishmania spp.promastigotes and amastigotes resulted in similar visible bands,and proteins ranged in molecular weight from 12 ku to 150 ku.Western blotting showed that similar antigens were identified by polyclonal sera against L.donovani and L.tropica.Promastigotes and amastigotes of the 3 different Leishmania spp.had similar antigens of 48 ku,65 ku,and 35 ku.A 38-ku stage-specific antigen was present in L.donovani amastigotes and L.infantum amastigotes,and 45-ku and 24-ku species-specific antigens were present in L.tropica promastigotes and amastigotes.Conclusion Antigenic diversity is present in different Leishmania spp.This finding provides new insight into understanding immunity from leishmaniasis.%目的 观察不同种株利什曼原虫抗原的异质性.方法 培养杜氏利什曼原虫、热带利什曼原虫及婴儿利什曼原虫前鞭毛体及体外转化无鞭毛体,提取总蛋白,经SDS-PAGE电泳后,分别以抗杜氏利什曼原虫及热带利什曼原虫前鞭毛体血清进行Western blot,分析抗原的多样性.结果 经SDS-PAGE电泳和考马斯亮蓝染色,杜氏利什曼原虫、热带利什曼原虫及婴儿利什曼原虫前鞭毛体及体外转化无鞭毛体总蛋白呈现出分子质量单位为12~150 ku的相似蛋白带型;Western blot显示,抗杜氏利什曼原虫前鞭毛体多克隆血清识别的抗原组分与抗热带利什曼原虫前鞭毛体多克隆

  18. Adipose tissue-derived mesenchymal stem cells as a new host cell in latent leishmaniasis.

    Science.gov (United States)

    Allahverdiyev, Adil M; Bagirova, Melahat; Elcicek, Serhat; Koc, Rabia Cakir; Baydar, Serap Yesilkir; Findikli, Necati; Oztel, Olga N

    2011-09-01

    Some protozoan infections such as Toxoplasma, Cryptosporidium, and Plasmodium can be transmitted through stem cell transplantations. To our knowledge, so far, there is no study about transmission of Leishmania parasites in stem cell transplantation and interactions between parasites and stem cells in vitro. Therefore, the aim of this study was to investigate the interaction between different species of Leishmania parasites and adipose tissue-derived mesenchymal stem cells (ADMSCs). ADMSCs have been isolated, cultured, characterized, and infected with different species of Leishmania parasites (L. donovani, L. major, L. tropica, and L. infantum). Infectivity was examined by Giemsa staining, microculture, and polymerase chain reaction methods. As a result, infectivity of ADMSCs by Leishmania parasites has been determined for the first time in this study. According to our findings, it is very important that donors are screened for Leishmania parasites before stem cell transplantations in regions where leishmaniasis is endemic. PMID:21896818

  19. The sesquiterpene (-)-α-bisabolol is active against the causative agents of Old World cutaneous leishmaniasis through the induction of mitochondrial-dependent apoptosis.

    Science.gov (United States)

    Corpas-López, V; Merino-Espinosa, G; Díaz-Sáez, V; Morillas-Márquez, F; Navarro-Moll, M C; Martín-Sánchez, J

    2016-10-01

    Cutaneous leishmaniasis treatment remains challenging due to the absence of a satisfactory treatment. The screening of natural compounds is a valuable strategy in the search of new drugs against leishmaniasis. The sesquiterpene (-)-α-bisabolol is effective in vivo against visceral leishmaniasis due to Leishmania infantum, but its mechanism of action remains elusive. The aim of this study is to validate this promising compound against the causative species of Old World cutaneous leishmaniasis and to get an insight into its antileishmanial mode of action. The compound was evaluated on L. tropica promastigotes and intracellular amastigotes using bone marrow-derived macrophages and its cytotoxicity was evaluated on L929 fibroblasts. The reactive oxygen species generation was evaluated using a sensitive probe. Mitochondrial depolarization was assessed evaluating the fluorescence due to rhodamine 123 in a flow cytometer. Apoptosis was investigated by measuring the fluorescence due to annexin V and propidium iodide in a flow cytometer. The ultrastructure of treated promastigotes and intracellular amastigotes was analysed through transmission electron microscopy. (-)-α-Bisabolol was active against L. tropica intracellular amastigotes displaying an inhibitory concentration 50 % of 25.2 µM and showing low cytotoxicity. This compound induced time and dose-dependent oxidative stress, mitochondrial depolarization and phosphatidilserine externalization (a marker of apoptosis). These effects were noticed at a low concentration and short exposure time. In the ultrastructural analyses, the treated parasites showed mitochondrial disruption, presence of electron-dense structures and chromatin condensation. These results suggest that this natural compound induces oxidative stress and mitochondrial-dependent apoptosis on Leishmania without disturbing the plasma membrane. PMID:27539477

  20. Epidemiological aspects of canine visceral leishmaniosis in the Islamic Republic of Iran.

    Science.gov (United States)

    Mohebali, Mehdi; Hajjaran, Homa; Hamzavi, Yazdan; Mobedi, Iraj; Arshi, Shahnam; Zarei, Zabih; Akhoundi, Behnaz; Naeini, Koroush Manouchehri; Avizeh, Reza; Fakhar, Mehdi

    2005-05-15

    An epidemiological study to examine the sero-prevalence of zoonotic visceral leishmaniosis (ZVL) among domestic and wild canines in endemic foci of Iran was carried out during 1999-2003 to assess the distribution of the disease and the possible association between infection in dogs, wild canines and people. Anti-leishmanial antibodies were detected by the direct agglutination test (DAT). Parasitological study was performed for all captured wild canines and were detected in some of the seropositive dogs with specific clinical signs (n=107). Serum samples (n=1568) were collected from domestic dogs in villages that are known endemic foci of human visceral leishmaniosis (HVL). Wild canine sera were collected from jackals (Canis aureus, n=10), foxes (Vulpes vulpes, n=10) and wolves (Canis lupus, n=10). Of the 1568 serum sampled collected from domestic dogs, 222 (14.2%) were positive by DAT (1:320 and above). No statistically significant difference was found between male (15.2%) and female (11.8%) sero-prevalence (P=0.083). Dogs of 8 years and above showed the highest sero-prevalence (40.6%). Only 23.9% of the seropositive domestic dogs had clinical signs. Parasitology and serology tests that were performed in 30 wild canines showed 10% these animals were infected by Leishmania infantum. Ten out of 11 Leishmania spp. isolated from the dogs and wild canines were identified as L. infantum and one other as L. tropica by molecular and biochemical techniques. For the first time in Iran, L. infantum and L. tropica were isolated from viscera of both a wolf and a domestic dog. PMID:15845279

  1. Cutaneous Leishmaniasis in Suspected Patients Referred To the Center for Research and Training in Skin Diseases and Leprosy, Tehran, Iran from 2008 To 2011

    Directory of Open Access Journals (Sweden)

    Akram Mir Amin Mohammadi

    2013-09-01

    Full Text Available Background: Cutaneous leishmaniasis (CL is a major health problem in many parts of Iran, although diagnosis of CL especially in the endemic area is easy, but treatment and management of the disease is a global dilemma. Diagno­sis of CL in non-endemic area is not as simple as in endemic foci. In this study, the status and the proportions of CL induced by Leishmania major and L. tropica among CL suspected patients referred to the Center for Research and Training in Skin Diseases and Leprosy, (CRTSDL during 2008 to 2011 are described.Methods: CL patients with suspected lesions were clinically examined. History of trip to zoonotic CL and/or anthroponotic CL endemic areas and the characte­ristics of their lesion(s were recorded. Diagnosis of the lesion was done using direct smear microscopy, culture and conventional polymerase chain reaction (PCR.Results: A total of 404 (M=256, F=148 patients with 776 lesions were re­cruited and parasitologically examined. The results showed that 255 of the pa­tients with 613 lesions; patients with lesion(s induced by L. major=147 (M=63, 43%, F=84, 57% and lesion(s induced by L. tropica=108 (M=35, 32%, F=73, 68%. History of travel to endemic area was not always correlated with isolated Leishmania species.Conclusion: Although travel history to endemic area is an important factor to be considered for diagnosis, but parasitological confirmation is necessary initia­tion of treatment.

  2. A voltage-gated pore for translocation of tRNA

    Energy Technology Data Exchange (ETDEWEB)

    Koley, Sandip; Adhya, Samit, E-mail: nilugrandson@gmail.com

    2013-09-13

    Highlights: •A tRNA translocating complex was assembled from purified proteins. •The complex translocates tRNA at a membrane potential of ∼60 mV. •Translocation requires Cys and His residues in the Fe–S center of RIC6 subunit. -- Abstract: Very little is known about how nucleic acids are translocated across membranes. The multi-subunit RNA Import Complex (RIC) from mitochondria of the kinetoplastid protozoon Leishmania tropica induces translocation of tRNAs across artificial or natural membranes, but the nature of the translocation pore remains unknown. We show that subunits RIC6 and RIC9 assemble on the membrane in presence of subunit RIC4A to form complex R3. Atomic Force Microscopy of R3 revealed particles with an asymmetric surface groove of ∼20 nm rim diameter and ∼1 nm depth. R3 induced translocation of tRNA into liposomes when the pH of the medium was lowered to ∼6 in the absence of ATP. R3-mediated tRNA translocation could also be induced at neutral pH by a K{sup +} diffusion potential with an optimum of 60–70 mV. Point mutations in the Cys{sub 2}–His{sub 2} Fe-binding motif of RIC6, which is homologous to the respiratory Complex III Fe–S protein, abrogated import induced by low pH but not by K{sup +} diffusion potential. These results indicate that the R3 complex forms a pore that is gated by a proton-generated membrane potential and that the Fe–S binding region of RIC6 has a role in proton translocation. The tRNA import complex of L. tropica thus contains a novel macromolecular channel distinct from the mitochondrial protein import pore that is apparently involved in tRNA import in some species.

  3. Investigations into rhizosphere microflora of some plants in Libya.

    Science.gov (United States)

    Selim, M S; Khalil, G A

    1979-01-01

    The present investigation deals with the effect of raising Hordeum vulgare and Arachis hypogaea at two different stages on the microbial rhizosphere population. The studies were extended to reveal the microbiological occurrence in different horizons of a soil profile corresponding in length to root regions. Bacteria were most abundant, followed by actinomycetes while fungi were less abundant and more restricted in their distribution. The three groups of microorganisms varied markedly in the rhizosphere of the two plants under investigation. The plant age had a great influence on the frequency of occurrence of the different microorganisms. One strain of bacteria, six fungi and the members of the grey series of Streptomyces were dominant. Actinomycetes and fungi diminished with the depth of soil, while the bacterial counts increased.

  4. Lectins with Anti-HIV Activity: A Review

    Directory of Open Access Journals (Sweden)

    Ouafae Akkouh

    2015-01-01

    Full Text Available Lectins including flowering plant lectins, algal lectins, cyanobacterial lectins, actinomycete lectin, worm lectins, and the nonpeptidic lectin mimics pradimicins and benanomicins, exhibit anti-HIV activity. The anti-HIV plant lectins include Artocarpus heterophyllus (jacalin lectin, concanavalin A, Galanthus nivalis (snowdrop agglutinin-related lectins, Musa acuminata (banana lectin, Myrianthus holstii lectin, Narcissus pseudonarcissus lectin, and Urtica diocia agglutinin. The anti-HIV algal lectins comprise Boodlea coacta lectin, Griffithsin, Oscillatoria agardhii agglutinin. The anti-HIV cyanobacterial lectins are cyanovirin-N, scytovirin, Microcystis viridis lectin, and microvirin. Actinohivin is an anti-HIV actinomycete lectin. The anti-HIV worm lectins include Chaetopterus variopedatus polychaete marine worm lectin, Serpula vermicularis sea worm lectin, and C-type lectin Mermaid from nematode (Laxus oneistus. The anti-HIV nonpeptidic lectin mimics comprise pradimicins and benanomicins. Their anti-HIV mechanisms are discussed.

  5. Isolation and characterization of Streptomyces spp. strains F-6 and F-7 capable of decomposing alkali lignin.

    Science.gov (United States)

    Yang, Y S; Zhou, J T; Lu, H; Yuan, Y L; Zhao, L H

    2012-12-01

    Biodegradation and bioconversion of lignin are the result of the combined action of fungi, bacteria and actinomycetes. Through screening from forest soil, two novel isolated actinomycete strains were identified as Streptomyces spp. strains F-6 and F-7 by their morphology, cultural characteristics and high homology to the 16S rRNA gene. Both strains possessed laccase and manganese peroxidase activities. Laccase activity produced by strain F-6 was up to 935.4 U g(-1) dry cell weight. More than 50% of alkali lignin was removed by strains F-6 and F-7 in 12 days of incubation. GC-MS analysis of the biodegraded products showed strain F-6 converted lignin into phenol and broken phenol compounds. The two strains could co-culture with white-rot fungus, and the combined actinonycete-fungus system decomposed alkali lignin effectively. PMID:23437660

  6. 西瓜枯萎病土壤拮抗菌的筛选%Screening of Soil Antagonistic Bacteria for Watermelon Fusarium Wilt

    Institute of Scientific and Technical Information of China (English)

    胡雪芹; 张洪斌; 苏晓飞

    2008-01-01

    [Objective] The aim of this study was to screen bacteria strains with stable antagonistic effect against watermelon fusarium wilt from soil and investigate the biological control of watermelon fusarium wilt by applying the antagonistic bacteria strains into soil. [Method] Actinomycete strains, fluorescent bacteria strains and bacillus strains were isolated from soil samples by the dilution-plate method, then its resistance was screened respectively by the improved confront culture method after colonies were purified. Finally, bacteria strains with better antagonistic effect were identified. [Result] 29 bacteria strains with stable antagonistic effect against watermelon fusarium wilt were screened from 39 soil samples, which contained 15 fluorescent bacteria strains, 5 bacillus strains and 9 actinomycete strains. Furthermore, three antagonistic bacteria strains of FM2, FM3 and FM4 with the strongest antagonism were identified primarily. [Conclusion] According to cultural characteristics, morphological observation, biochemical and physiological tests, FM2 belongs to bacillus subtilis, while FM3 and FM4 belong to micrococcus.

  7. Mycetoma: Nonvenereal perineal lesions

    Directory of Open Access Journals (Sweden)

    Gupta Shweta

    2010-01-01

    Full Text Available Mycetoma is a chronic, granulomatous disease of the skin, and subcutaneous tissue, which sometimes involves muscle, bones, and neighboring organs. It is characterized by tumefaction, abscess formation, and fistulae with discharge of grains from sinuses. Mycetoma can be caused by various species of fungi (eumycetoma and aerobic actinomycetes (actinomycetoma, which occur as saprophytes in soil or plants. A tentative diagnosis sufficient to initiate treatment may be made on the basis of grain color. For instance, melanoid grains are always caused by fungi and ochroid or pale grains by actinomycetes. Although this is not the thumbrule, there are exceptional reports too. As trauma favors infection, most lesions are on the foot and lower leg but they may occur anywhere on the body mimicking actinomycosis. However, lab investigations and culture are important tool to differentiate apart from the clinical picture. We are reporting atypical case with unusual site of presentation (perineum and thigh of mycetoma.

  8. Long-term effect of mineral fertilizers and amendments on microbial dynamics in an alfisol of Western Himalayas.

    Science.gov (United States)

    Mahajan, S; Kanwar, S S; Sharma, S P

    2007-03-01

    The microbial dynamics expressed in terms of culturable microbial populations i.e. bacteria, fungi, actinomycetes and Azotobacter were measured after 33 years of continuous application of mineral fertilizers and amendments to an acid alfisol. The bacterial, fungal and Azotobacter populations were maximum in plots treated with mineral fertilizers and FYM (100%NPK+FYM) while actinomycetes population was maximum in mineral fertilizes and lime treated plots (100%NPK+Lime). The bacterial population decreased and fungal population increased with increasing levels of NPK i.e. from 50% to 150%NPK. Bacillus species of bacteria and Gliocladium, Aspergillus and Rhizopus species of fungi were the main dominating culturable microorganisms in all the treatments. The FYM and lime amended plots sustained crop productivity and microbial populations at higher levels than rest of the mineral fertilizer treatments. The nitrogenous fertilizers alone had the most deleterious effect on crop productivity and the biological soil environment.

  9. Autochthonous microbial community associated with pine needle forest litterfall influences its degradation under natural environmental conditions.

    Science.gov (United States)

    Mahajan, Rishi; Nikitina, Anna; Litti, Yury; Nozhevnikova, Alla; Goel, Gunjan

    2016-07-01

    The slow natural degradation of chir pine (Pinus roxburghii) needle litterfall and its accumulation on forest floors have been attributed to its lignocellulosic complexities of the biomass. The present study offers a microbiological insight into the role of autochthonous microflora associated with pine needle litterfall in its natural degradation. The denaturing gradient gel electrophoresis (DGGE) fingerprinting indicated actinomycetes (Saccharomonospora sp., Glycomyces sp., Agrococcus sp., Leifsonia sp., Blastocatella sp., and Microbacterium sp.) as a dominant microbial community associated with pine needle litterfall with the absence of fungal decomposers. On exclusion of associated autochthonous microflora from pine litterfall resulted in colonization by decomposer fungi identified as Penicillium chrysogenum and Aspergillus sp., which otherwise failed to colonize the litterfall under natural conditions. The results, therefore, indicated that the autochthonous microbial community of pine needle litterfall (dominated by actinomycetes) obstructs the colonization of litter-degrading fungi and subsequently hinders the overall process of natural degradation of litterfall. PMID:27317052

  10. 药用植物根际土壤放线菌的研究进展

    Institute of Scientific and Technical Information of China (English)

    晏丽

    2016-01-01

    This paper systematically describes the type of the medicinal plant rhizosphere actinomycete resources and the diversity of the secondary metabolites of , and the research methods on plant rhizosphere soil actinomycete ,in order to provide theoretical basis for the comprehensive development and utilization of medicinal plant resources and scientific protection.%本文系统地阐述了药用植物根际放线菌资源的种类和次级代谢产物的多样性,以及植物根际土壤放线菌的研究方法,以期为药用植物资源的综合开发利用、科学保护提供理论依据。

  11. [2H26]-1-epi-Cubenol, a completely deuterated natural product from Streptomyces griseus

    OpenAIRE

    Christian A. Citron; Dickschat, Jeroen S.

    2013-01-01

    During growth on fully deuterated medium the volatile terpene [2H26]-1-epi-cubenol was released by the actinomycete Streptomyces griseus. This compound represents the first completely deuterated terpene obtained by fermentation. Despite a few previous reports in the literature the operability of this approach to fully deuterated compounds is still surprising, because the strong kinetic isotope effect of deuterium is known to slow down all metabolic processes in living organisms. Potential app...

  12. [2H26]-1-epi-Cubenol, a completely deuterated natural product from Streptomyces griseus

    OpenAIRE

    Christian A. Citron; Dickschat, Jeroen S.

    2013-01-01

    During growth on fully deuterated medium the volatile terpene [2H26]-1-epi-cubenol was released by the actinomycete Streptomyces griseus. This compound represents the first completely deuterated terpene obtained by fermentation. Despite a few previous reports in the literature the operability of this approach to fully deuterated compounds is still surprising, because the strong kinetic isotope effect of deuterium is known to slow down all metabolic processes in living organisms. Potential app...

  13. Investigation of the Amycolatopsis sp. Strain ATCC 39116 Vanillin Dehydrogenase and Its Impact on the Biotechnical Production of Vanillin

    OpenAIRE

    Fleige, Christian; Hansen, Gunda; Kroll, Jens; Steinbüchel, Alexander

    2013-01-01

    The actinomycete Amycolatopsis sp. strain ATCC 39116 is capable of synthesizing large amounts of vanillin from ferulic acid, which is a natural cell wall component of higher plants. The desired intermediate vanillin is subject to undesired catabolism caused by the metabolic activity of a hitherto unknown vanillin dehydrogenase (VDHATCC 39116). In order to prevent the oxidation of vanillin to vanillic acid and thereby to obtain higher yields and concentrations of vanillin, the responsible vani...

  14. Precise cloning and tandem integration of large polyketide biosynthetic gene cluster using Streptomyces artificial chromosome system

    OpenAIRE

    Nah, Hee-Ju; Woo, Min-Woo; Choi, Si-Sun; Kim, Eung-Soo

    2015-01-01

    Background Direct cloning combined with heterologous expression of a secondary metabolite biosynthetic gene cluster has become a useful strategy for production improvement and pathway modification of potentially valuable natural products present at minute quantities in original isolates of actinomycetes. However, precise cloning and efficient overexpression of an entire biosynthetic gene cluster remains challenging due to the ineffectiveness of current genetic systems in manipulating large-si...

  15. The benomyl test as a fundamental diagnostic method for medical mycology.

    OpenAIRE

    Summerbell, R.C.

    1993-01-01

    The fungicide benomyl has long been known to differentially affect major taxonomic groups of fungi. In the present study 163 species or aggregates of closely similar species of medically important fungi and actinomycetes, as well as species commonly isolated as clinical contaminants, were tested to determine their reactions to three concentrations of benomyl. Fungi of basidiomycetous, endomycetous, and microascaceous affinities were highly resistant, including all common yeasts and Geotrichum...

  16. Population Dynamics of Biota on the Roots of Azolla microphylla Kaulfuss

    OpenAIRE

    NITA ETIKAWATI; JUTONO

    2000-01-01

    Azolla was a special fern that their associations with Anabaena azollae able to fix free nitrogen from air, to produce protein. Although by the ages, biota diversity those habits on the roots of Azolla increased and effected to protein concentration. The research was to find out population dynamics of biota on the roots of Azolla microphylla Kaulfuss and the growth peak. This study used Completely Randomized Design with 10 kinds of biota, i.e. bacteria, Fungi, Actinomycetes, Protozoa, Alga, C...

  17. Biosynthesis of Enediyne Antitumor Antibiotics

    OpenAIRE

    Van Lanen, Steven G.; Shen, Ben

    2008-01-01

    The enediyne polyketides are secondary metabolites isolated from a variety of Actinomycetes. All members share very potent anticancer and antibiotic activity, and prospects for the clinical application of the enediynes has been validated with the recent marketing of two enediyne derivatives as anticancer agents. The biosynthesis of these compounds is of interest because of the numerous structural features that are unique to the enediyne family. The gene cluster for five enediynes has now been...

  18. The Streptomyces leeuwenhoekii genome: de novo sequencing and assembly in single contigs of the chromosome, circular plasmid pSLE1 and linear plasmid pSLE2

    OpenAIRE

    Gomez-Escribano, Juan Pablo; Castro, Jean Franco; Razmilic, Valeria; Chandra, Govind; Andrews, Barbara; Asenjo, Juan A.; Bibb, Mervyn J.

    2015-01-01

    Background Next Generation DNA Sequencing (NGS) and genome mining of actinomycetes and other microorganisms is currently one of the most promising strategies for the discovery of novel bioactive natural products, potentially revealing novel chemistry and enzymology involved in their biosynthesis. This approach also allows rapid insights into the biosynthetic potential of microorganisms isolated from unexploited habitats and ecosystems, which in many cases may prove difficult to culture and ma...

  19. Next Generation Sequencing of Actinobacteria for the Discovery of Novel Natural Products

    OpenAIRE

    Juan Pablo Gomez-Escribano; Silke Alt; Bibb, Mervyn J.

    2016-01-01

    Like many fields of the biosciences, actinomycete natural products research has been revolutionised by next-generation DNA sequencing (NGS). Hundreds of new genome sequences from actinobacteria are made public every year, many of them as a result of projects aimed at identifying new natural products and their biosynthetic pathways through genome mining. Advances in these technologies in the last five years have meant not only a reduction in the cost of whole genome sequencing, but also a subs...

  20. Cloning, Characterization and Heterologous Expression of the Indolocarbazole Biosynthetic Gene Cluster from Marine-Derived Streptomyces sanyensis FMA

    OpenAIRE

    Wenli Li; Kui Hong; Weiming Zhu; Jingtao Zhang; Qiu Cui; Yuanyuan Du; Tong Li

    2013-01-01

    The indolocarbazole (ICZ) alkaloids have attracted much attention due to their unique structures and potential therapeutic applications. A series of ICZs were recently isolated and identified from a marine-derived actinomycete strain, Streptomyces sanyensis FMA. To elucidate the biosynthetic machinery associated with ICZs production in S. sanyensis FMA, PCR using degenerate primers was carried out to clone the FAD-dependent monooxygenase gene fragment for ICZ ring formation, which was used as...