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Sample records for acidic fens reveal

  1. Complex microbiota of a Chinese "Fen" liquor fermentation starter (Fen-Daqu), revealed by culture-dependent and culture-independent methods

    NARCIS (Netherlands)

    Zheng, X.; Zheng, Y.; Han, B.; Zwietering, M.H.; Samson, R.A.; Boekhout, T.; Nout, M.J.R.

    2012-01-01

    Daqu is a traditional fermentation starter that is used for Chinese liquor production. Although partly mechanized, its manufacturing process has remained traditional. We investigated the microbial diversity of Fen-Daqu, a starter for light-flavour liquor, using combined culture-dependent and

  2. Concepts of fen and bog re-examined in relation to bryophyte cover and the acidity of surface waters

    OpenAIRE

    Eville Gorham; Jan A. Janssens

    2014-01-01

    Studies of surface-water pH and bryophyte assemblages in 440 plots from five peatland regions across northern North America reveal a very distinct, two-fold division into fens with a pH mode at 6.76-7.00, in which Amblystegiaceae are prominent, and bogs with a pH mode at 4.01-4.25, in which Sphagnaceae are dominant. The relevance of the data to past and current views on peatland classification is explored.

  3. Concepts of fen and bog re-examined in relation to bryophyte cover and the acidity of surface waters

    Directory of Open Access Journals (Sweden)

    Eville Gorham

    2014-01-01

    Full Text Available Studies of surface-water pH and bryophyte assemblages in 440 plots from five peatland regions across northern North America reveal a very distinct, two-fold division into fens with a pH mode at 6.76-7.00, in which Amblystegiaceae are prominent, and bogs with a pH mode at 4.01-4.25, in which Sphagnaceae are dominant. The relevance of the data to past and current views on peatland classification is explored.

  4. Seed dispersal in fens

    NARCIS (Netherlands)

    Middleton, Beth; van Diggelen, Rudy; Jensen, Kai

    Question: How does seed dispersal reduce fen isolation and contribute to biodiversity? Location: European and North American fens. Methods: This paper reviews the literature on seed dispersal to fens. Results: Landscape fragmentation may reduce dispersal opportunities thereby isolating fens and

  5. Phylogenetic comparison of the methanogenic communities from an acidic, oligotrophic fen and an anaerobic digester treating municipal wastewater sludge.

    Science.gov (United States)

    Steinberg, Lisa M; Regan, John M

    2008-11-01

    Methanogens play a critical role in the decomposition of organics under anaerobic conditions. The methanogenic consortia in saturated wetland soils are often subjected to large temperature fluctuations and acidic conditions, imposing a selective pressure for psychro- and acidotolerant community members; however, methanogenic communities in engineered digesters are frequently maintained within a narrow range of mesophilic and circumneutral conditions to retain system stability. To investigate the hypothesis that these two disparate environments have distinct methanogenic communities, the methanogens in an oligotrophic acidic fen and a mesophilic anaerobic digester treating municipal wastewater sludge were characterized by creating clone libraries for the 16S rRNA and methyl coenzyme M reductase alpha subunit (mcrA) genes. A quantitative framework was developed to assess the differences between these two communities by calculating the average sequence similarity for 16S rRNA genes and mcrA within a genus and family using sequences of isolated and characterized methanogens within the approved methanogen taxonomy. The average sequence similarities for 16S rRNA genes within a genus and family were 96.0 and 93.5%, respectively, and the average sequence similarities for mcrA within a genus and family were 88.9 and 79%, respectively. The clone libraries of the bog and digester environments showed no overlap at the species level and almost no overlap at the family level. Both libraries were dominated by clones related to uncultured methanogen groups within the Methanomicrobiales, although members of the Methanosarcinales and Methanobacteriales were also found in both libraries. Diversity indices for the 16S rRNA gene library of the bog and both mcrA libraries were similar, but these indices indicated much lower diversity in the 16S digester library than in the other three libraries.

  6. Seed dispersal in fens

    Science.gov (United States)

    Middleton, B.; Van Diggelen, R.; Jensen, K.

    2006-01-01

    Question: How does seed dispersal reduce fen isolation and contribute to biodiversity? Location: European and North American fens. Methods: This paper reviews the literature on seed dispersal to fens. Results: Landscape fragmentation may reduce dispersal opportunities thereby isolating fens and reducing genetic exchange. Species in fragmented wetlands may have lower reproductive success, which can lead to biodiversity loss. While fens may have always been relatively isolated from each other, they have become increasingly fragmented in modern times within agricultural and urban landscapes in both Europe and North America. Dispersal by water, animals and wind has been hampered by changes related to development in landscapes surrounding fens. Because the seeds of certain species are long-lived in the seed bank, frequent episodes of dispersal are not always necessary to maintain the biodiversity of fens. However, of particular concern to restoration is that some dominant species, such as the tussock sedge Carex stricta, may not disperse readily between fens. Conclusions: Knowledge of seed dispersal can be used to maintain and restore the biodiversity of fens in fragmented landscapes. Given that development has fragmented landscapes and that this situation is not likely to change, the dispersal of seeds might be enhanced by moving hay or cattle from fens to damaged sites, or by reestablishing lost hydrological connections. ?? IAVS; Opulus Press.

  7. Ecoenzymatic stoichiometry and microbial processing of organic matter in northern bogs and fens reveals a common P-limitation between peatland types

    Science.gov (United States)

    Brian H. Hill; Colleen M. Elonen; Terri M. Jicha; Randall K. Kolka; LaRae L.P. Lehto; Stephen D. Sebestyen; Lindsey R. Seifert-Monson

    2014-01-01

    We compared carbon (C), nitrogen (N), and phosphorus (P) concentrations in atmospheric deposition, runoff, and soils with microbial respiration [dehydrogenase (DHA)] and ecoenzyme activity (EEA) in an ombrotrophic bog and a minerotrophic fen to investigate the environmental drivers of biogeochemical cycling in peatlands at the Marcell Experimental Forest in northern...

  8. Ecoenzymatic stoichiometry and microbial processing of organic matter in northern bogs and fens reveals a common P limitation among peatland types

    Science.gov (United States)

    We compared C, N, and P concentrations in atmospheric deposition, runoff, and soil standing stocks with microbial respiration (DHA) and ecoenzyme activity (EEA) in an ombrotrophic bog (S2) and a minerotrophic fen (S3) to investigate the environmental drivers of biogeochemical cyc...

  9. Interactions between the APOA5 -1131T>C and the FEN1 10154G>T polymorphisms on ω6 polyunsaturated fatty acids in serum phospholipids and coronary artery disease

    Science.gov (United States)

    Park, Ju Yeon; Paik, Jean Kyung; Kim, Oh Yoen; Chae, Jey Sook; Jang, Yangsoo; Lee, Jong Ho

    2010-01-01

    We determined the contribution of the combination of FEN1 10154G>T with the most significant association in the analysis of plasma arachidonic acid (AA, 20:4ω6) and the APOA5-1131T>C on phospholipid ω6PUFA and coronary artery disease (CAD). Patients with CAD (n = 807, 27–81 years of age) and healthy controls (n = 1123) were genotyped for FEN1 10154G>T and APOA5-1131T>C. We found a significant interaction between these two genes for CAD risk (P = 0.007) adjusted for confounding factors. APOA5-1131C allele carriers had a higher CAD risk [odds ratio (OR):1.484, 95% confidence interval (CI):1.31–1.96; P = 0.005] compared with APOA5-1131TT individuals in the FEN1 10154GG genotype group but not in the FEN1 10154T allele group (OR:1.096, 95%CI:0.84–1.43; P = 0.504). Significant interactions between these two genes were also observed for the AA proportion (P = 0.04) and the ratio of AA/linoleic acid (LA, 18:2ω6) (P = 0.004) in serum phospholipids of controls. The APOA5-1131C allele was associated with lower AA (P = 0.027) and AA/LA (P = 0.014) only in controls carrying the FEN1 10154T allele. In conclusion, the interaction between these genes suggests that the FEN1 10154T variant allele decreases AA and AA/LA in the serum phospholipids of carriers of the APOA5-1131C allele, but contributes no significant increase in CAD risk for this population subset despite their increased triglylcerides and decreased apoA5. PMID:20802161

  10. Prospects for fen meadow restoration on severely degraded fens

    NARCIS (Netherlands)

    Klimkowska, Agata; Diggelen, Rudy Van; Grootjans, Ab P.; Kotowski, Wiktor

    2010-01-01

    The majority of fens in Europe have been transformed for agricultural purposes and have disappeared or become degraded. Fen meadows that developed under low-intensity management of fens also have become degraded. In this paper, we consider the available restoration methods, biotic constraints for

  11. Distribution of the insecticide 14 C-fen valerate and its effect on protein and amino acid content in different brain areas of the rat

    International Nuclear Information System (INIS)

    Aly, M.A.S.

    1998-01-01

    Intragastric administration of fenvalerate (45 mg/kg) to male rats induced symptoms associated with gamma-cyano pyrethroids (type II syndrome). Fenvalerate crossed blood brain barrier and reached different brain areas. The highest concentration of fenvalerate was found in striatum (18.7+2.5 Mou/g) followed by pons + medulla oblongata (10.4+ 0.91Moug/g) after 24 h of the insecticide administration. A decrease in the protein content in different brain areas was recorded at 24 h. However, it was observed that there was a tendency for the protein level to recover at 48 h although it was still lower than corresponding controlgroup. Excitatory neurotransmitter amino acids, glutamic and aspartic, in the pons + medulla oblongata showed a prominent decrease (-9.9 and 7.0%, respectively). Inhibitory neurotransmitter amino acids, glycine and alanine, showed a slight decrease. On the other hand, the amino acids in the striatum revealed fluctuating changes. Amino acids acting as a precursor of neurotransmitter were also affected in the selected brain areas. The data obtained revealed that fenvalerate caused subtle disruption in the integrity of the CNS and there is a possibility that such disruption might result in physiological and behavioural alteration which may affect the organism ability to interact with environment

  12. Método para a Determinação de Ácidos Fenólicos na Parede Celular de Forragens Method for Phenolic Acid Determination in Forage Cell Wall

    Directory of Open Access Journals (Sweden)

    Francisco Carlos Deschamps

    2002-07-01

    Full Text Available Há fatores que limitam a digestão das forragens tropicais e estão associados à dinâmica dos ácidos fenólicos da parede celular. Os estudos destes compostos em forragens podem ser facilitados pela disponibilidade de métodos sensíveis que permitam o processamento de grande número de amostras. No presente trabalho, descreve-se um método para a determinação de ácidos fenólicos na parede celular de forragens, utilizando cromatografia líquida de alta eficiência (CLAE. Bagaço de cana, capim-elefante e folhas de mandioca foram utilizados como amostras experimentais. Para remover substâncias solúveis de baixa massa molecular, foram testados etanol 80% e o detergente neutro, determinando seus efeitos sobre a recuperação das moléculas e benefícios no perfil cromatográfico. Para a obtenção dos ácidos fenólicos livres, as amostras foram solubilizadas em NaOH 1 mol/L, 20ºC por 24 horas. O método proposto foi adequado para a determinação de ácidos fenólicos, apresentando grande sensibilidade e produtividade no laboratório. Para minimizar os efeitos negativos da formação de sal resultante da neutralização ácida do extrato alcalino, sugere-se a diluição da amostra ou a injeção de pequeno volume (5 uL no aparelho. O efeito da utilização de solventes como etanol 80% ou detergente neutro é distinto sobre as amostras das gramíneas e leguminosas. A quantidade de extrativos nas folhas de mandioca foi superior a do bagaço de cana e capim-elefante. A concentração de ácidos fenólicos foi pouco alterada pela ação dos solventes, sendo maior nas amostras de bagaço de cana e capim-elefante, em relação às folhas de mandioca. O método apresentado constitui-se em uma importante ferramenta para o estudo dos ácidos fenólicos na parede celular de forragens tropicais.Factors that limit the digestion of tropical forages are associated to the dynamic of cell wall phenolic acids. The study of these compounds in forages may

  13. Calcareous Fens - Source Feature Points

    Data.gov (United States)

    Minnesota Department of Natural Resources — Pursuant to the provisions of Minnesota Statutes, section 103G.223, this database contains points that represent calcareous fens as defined in Minnesota Rules, part...

  14. Fens As Ecohydrologic Gauges of Climate Change in California

    Science.gov (United States)

    Drexler, J. Z.; Flint, L. E.; Flint, A. L.; Knifong, D. L.

    2014-12-01

    The purpose of this study was to demonstrate the use of montane groundwater-fed peatlands called fens as gauges for changes in groundwater recharge through time. Due to their consistent groundwater flows, fens remain saturated during the growing season, thus serving as ecological refugia for a range of sensitive biota including the federally threatened Yosemite toad (Anaxyrus canorus). In this project, five fens in the Sierra Nevada and two in the southern Cascade Mountains were studied over a 50-80 year period using historic aerial photography and GIS analysis. Fen areas were delineated using vegetation distributions and site wetness as visual keys to fen areal extent. In addition, a climate analysis of precipitation, snowpack, evapotranspiration, and mean minimum monthly temperature (Tmin) was carried out for the years 1950 - 2010 using a distributed parameter water-balance model called the Basin Characterization Model. Over the study period, all five Sierra fens decreased by 10-15% in delineated area, but little change occurred in the Cascade fens. The climate analysis revealed major changes through time in Tmin and the frequency of June months with zero snowpack (snowpack longevity) at the five Sierra sites. At the Cascade sites, increases in Tmin occurred more recently and decreases in snowpack longevity were more subtle. The different behavior of fens in the Cascades versus the Sierra Nevada suggests that underlying geology, particularly hydraulic conductivity, rock porosity, and size of groundwater reservoirs, may be an important buffer to change. These results show that fens in the Sierra Nevada are highly responsive ecohydrologic gauges that can be used to track reductions in groundwater recharge due to climate change. Further studies using isotopic and/or geochemical approaches are needed to quantify the changes in groundwater recharge that were identified with fens. Because fens provide critical habitat for sensitive species, major changes in hydrology

  15. Actividad antioxidante de los compuestos fenólicos

    Directory of Open Access Journals (Sweden)

    Maestro Durán, R.

    1993-04-01

    Full Text Available This review deals with the oxidation processes induced by light and atmospheric oxygen, as well as the protective action on antioxidant compounds. The available data on the synthetic antioxidants and the problems associated to their use, together with the presence of natural phenolic antioxidants in plants, have been revised. These phenolic antioxidants have been classified in families: phenolic alcohols and acids, cinnamic acids, coumarins, favonoids (flavones and isoflavones, flavonols, flavanones and other phenolic compounds.

    Este trabajo recoge los estudios sobre los mecanismos de oxidación producida por la luz y el oxígeno del aire y sobre la protección de los compuestos antioxidantes contra esta oxidación. Se han revisado los datos existentes sobre los inconvenientes de los antioxidantes sintéticos, que aconsejan sustituirlos por otros naturales y sobre la presencia de antioxidantes naturales de carácter fenólico en las plantas. Los antioxidantes fenólicos se han agrupado por familias: alcoholes y ácidos fenólicos, ácidos cinámicos, cumarinas, flavonoides (flavonas e isoflavonas, flavonoles, flavanonas y otros compuestos fenólicos.

  16. Extração, análise e distribuição dos ácidos fenólicos em genótipos pigmentados e não pigmentados de arroz (Oryza sativa L. Extraction, analysis and distribution of phenolic acids in pigmented and non-pigmented genotypes of rice (Oryza sativa L.

    Directory of Open Access Journals (Sweden)

    Nádia Valéria Mussi de Mira

    2008-12-01

    Full Text Available Neste estudo, avaliaram-se a distribuição dos Compostos Fenólicos Totais (CFT e o perfil de ácidos fenólicos, presentes nas frações, solúvel e insolúvel de dez genótipos de arroz (Oryza sativa L. de pericarpo pigmentado e não pigmentado. Devido à sua elevada capacidade antioxidante, os compostos fenólicos vem sendo apontados como possíveis promotores da saúde. Grande parte corresponde aos ácidos fenólicos presentes no grão sob a forma solúvel (livre e conjugada e insolúvel (ligada. Na literatura há poucas informações sobre a contribuição dos compostos fenólicos ligados, cujos teores são costumeiramente subestimados. Os CFT foram quantificados pelo método de Folin-Ciocalteau, enquanto os ácidos fenólicos por RP-HPLC. Na fração solúvel dos genótipos pigmentados, os teores de CFT foram variáveis, mas, em média, 5,7 vezes maiores do que nos não pigmentados (média de 3468 e 602 µg eq. Ácido Ferúlico (AF/g arroz, respectivamente, principalmente devido à presença de antocianinas e proantocianidinas. Na fração insolúvel, os pigmentados apresentaram duas vezes mais CFT do que os não pigmentados (825 e 378 µg eq. AF/g arroz, respectivamente, provavelmente devido à retenção de antocianinas e proantocianidinas, mesmo após cinco extrações consecutivas. Dentre os ácidos fenólicos, o ácido ferúlico foi o principal componente em todos os genótipos estudados, exceto no arroz preto, no qual predominou o ácido protocatecóico.This study was conducted to evaluate the distribution of total phenolic compounds and phenolic acids in the soluble and insoluble fractions of 10 rice (Oryza sativa L. genotypes with pigmented or non-pigmented pericarp. These compounds were reported to exert beneficial effects on human health due to their high antioxidant activities. The total phenolic compounds (CFT in both fractions was determined by the Folin-Ciocalteau method and phenolic acids RP-HPLC with Diode-Array Detection

  17. Hydrological landscape settings of base-rich fen mires and fen meadows : an overview

    NARCIS (Netherlands)

    Grootjans, A.P.; Adema, E.B.; Bleuten, W.; Joosten, H.; Madaras, M.; Janáková, M.; Middleton, B.

    2006-01-01

    Question: Why do similar fen meadow communities occur in different landscapes? How does the hydrological system sustain base-rich fen mires and fen meadows? Location: Interdunal wetlands and heathland pools in The Netherlands, percolation mires in Germany, Poland, and Siberia, and calcareous spring

  18. Actividad antioxidante, compuestos fenólicos y ácido ascórbico de frutillas en dos sistemas de producción Antioxidant activity, phenolic compounds and ascorbic acid content in strawberries from two crop production systems

    Directory of Open Access Journals (Sweden)

    Rufino Fernando F Cantillano

    2012-12-01

    Full Text Available El objetivo de este trabajo fue determinar la influencia del sistema de producción y del período de almacenamiento de frutillas sobre la pérdida de masa, compuestos fenólicos totales, antocianinas totales, ácido ascórbico (vitamina C, actividad antioxidante y sus correlaciones. En este experimento fueron utilizadas frutillas 'Camarosa' y 'Camino Real' con madurez comercial, procedentes de cultivos en sistemas de producción orgánico y convencional, localizados en el municipio de Pelotas-RS. Los frutos fueron almacenados durante 0, 2, 5 y 8 días a 1ºC y 90-95% de HR. En general, el contenido de fenoles totales, de antocianinas totales y la actividad antioxidante aumentaron durante el almacenamiento refrigerado, mientras que los contenidos de ácido ascórbico y de masa fresca disminuyeron significativamente. Los contenidos de fenoles totales y de antocianinas totales presentaron correlación positiva con la actividad antioxidante, siendo la correlación con el contenido de ácido ascórbico negativa. Las frutillas producidas en sistema orgánico y conservadas durante cinco días, mostraron mayores valores de actividad antioxidante. Después de ocho días de almacenamiento a 1ºC, los frutos del sistema de producción orgánico presentaron menor degradación de antocianinas y de ácido ascórbico que los frutos del sistema de producción convencional.The aim of this study was to determine the influence of the crop production system and storage period on weight loss, total phenolic content, total anthocyanin content, ascorbic acid (vitamin C content, and antioxidant activity in strawberries, as well as their correlations. For this experiment, strawberry fruits of 'Camarosa' and 'Camino Real' at commercial maturity from both organic and conventional crop production systems located in Pelotas, Brazil, were used. The fruits were cold stored for 0, 2, 5, and 8 days at 1ºC and 90-95% RH. In general the total phenolic, total anthocyanin levels

  19. Unravelling hydrological mechanisms behind fen deterioration

    NARCIS (Netherlands)

    van Loon, A.H.

    2010-01-01

    Low-productive fens are wetland ecosystems that have strongly declined in number and size in temperate regions of Western Europe since World War II. This fen type has significant conservation value in many countries because of its high species diversity and the presence of endangered plant species.

  20. compuestos fenólicos

    Directory of Open Access Journals (Sweden)

    Yolanda González García

    2005-01-01

    Full Text Available En este trabajo se presenta una revisión bibliográfica que tiene como objetivo identificar y analizar alternativas de aprovechamiento del bagazo de Agave tequilana Weber var. Azul. Se proponen dos líneas de investigación para obtener productos de valor agregado a partir de este residuo: 1utilización como fuente de carbono de bajo costo para la producción de biopolímeros y carbohidrasas, con bacterias celulolíticas del género Microbulbifer, Marinobacterium y Sagittula; 2obtención de compuestos fenólicos a partir de la lignina presente en sus fibras. Se concluye, que el bagazo de agave tequilero es un material viable para ser usado como substrato en procesos fermentativos, por lo que existen grandes oportunidades de investigación para desarrollar procesos de bioconversión técnicamente factible, eficiente y económicamente atractivo

  1. Emissions of biogenic sulfur gases from northern bogs and fens

    Science.gov (United States)

    Demello, William Zamboni; Hines, Mark E.; Bayley, Suzanne E.

    1992-01-01

    Sulfur gases are important components of the global cycle of S. They contribute to the acidity of precipitation and they influence global radiation balance and climate. The role of terrestrial sources of biogenic S and their effect on atmospheric chemistry remain as major unanswered questions in our understanding of the natural S cycle. The role of northern wetlands as sources and sinks of gaseous S by measuring rates of S gas exchange as a function of season, hydrologic conditions, and gradients in tropic status was investigated. Experiments were conducted in wetlands in New Hampshire, particularly a poor fen, and in Mire 239, a poor fen at the Experimental Lakes Area (ELA) in Ontario. Emissions were determined using Teflon enclosures, gas cryotrapping methods and gas chromatography (GC) with flame photometric detection. Dynamic (sweep flow) and static enclosures were employed which yielded similar results. Dissolved S gases and methane were determined by gas stripping followed by GC.

  2. Effect of Groundwater Abstraction on Fen Ecosystems

    DEFF Research Database (Denmark)

    Johansen, Ole; Pedersen, Morten Lauge; Jensen, Jacob Birk

    2011-01-01

    within a distance of 1.5 km to a planned well field. In the river valley the interaction between groundwater and surface water is strongly affected by low permeable sediments. These sediments reduce the direct discharge to the river and have a large impact on the functioning and presence of the rich fen......Quantifying the effects of groundwater abstraction on fen ecosystems located in discharge areas can be complicated. The water level in fens is close to the terrain surface most of the year and it is controlled by a relatively constant groundwater exfiltration. It is difficult to measure...... the exfiltration fluxes and thus water level data is typically used to evaluate if the ecosystem is affected. The paper presents collected data and analysis from a case study, where the hydrological effect of groundwater abstraction on rich fens and springs in a Danish river valley has been studied. The natural...

  3. Conversion of hydroxycinnamic acids into volatile phenols in a synthetic medium and in red wine by Dekkera bruxellensis Transformação de ácidos hidroxicinâmicos em fenóis voláteis em meio sintético e em vinho tinto por Dekkera bruxellensis

    Directory of Open Access Journals (Sweden)

    Maria João Cabrita

    2012-03-01

    Full Text Available The conversion of p-coumaric acid, ferulic acid, and caffeic acid into 4-ethylphenol, 4-ethylguaiacol and 4-ethylcatechol was studied in Dekkera bruxellensis ISA 1791 under defined conditions in a synthetic medium and in a red wine. Liquid chromatography (HPLC-DAD was used to quantify the phenolic acids, and gas chromatography (GC coupled to a FID detector was used to quantify volatile phenols using a novel analytical methodology that does not require sample derivatization. Identification was achieved by gas chromatography-mass detection (GC-MS. The results show that phenolic acids concentration decreases while volatile phenols concentration increases. The proportion of caffeic acid taken up by Dekkera bruxellensis is lower than that for p-coumaric or ferulic acid; therefore less 4-ethylcatechol is formed. More important, 4-ethylcathecol synthesis by Dekkera bruxellensis in wine has never been demonstrated so far. These results contribute decisively to a better understanding of the origin of the volatile phenols in wines. The accumulation of these compounds in wine is nowadays regarded as one of the key factors of quality control.A transformação do ácido p-cumárico, ácido ferúlico e ácido cafeico em 4-etilfenol, 4-etilguaiacol e 4-etilcatecol foi estudada na presença de Dekkera bruxelensis ISA 1791, sob condições controladas, em meio sintético e em vinho tinto. Os compostos fenólicos foram doseados por cromatografia em fase líquida (HPLC-DAD e os fenóis voláteis foram doseados por cromatografia em fase gasosa (GC com detector de ionização de chama (FID, recorrendo a uma metodologia que não requer prévia derivatização da amostra. A identificação dos compostos foi comprovada por espectrometria de massa (GC-MS. Os resultados demonstram que os teores em ácidos fenólicos diminuem enquanto se observa um aumento dos teores em fenóis voláteis. O ácido cafeico é dos três ácidos em estudo, o menos utilizado pela levedura, da

  4. Geochemistry and hydrology of a calcareous fen within the Savage Fen wetlands complex, Minnesota, USA

    Science.gov (United States)

    Komor, S.C.

    1994-01-01

    Savage Fen is a wetlands complex at the base of north-facing bluffs in the Minnesota River Valley. The complex includes 27.8 hectares of calcareous fen that host rare calciphile plants whose populations are declining in Minnesota. Water and sediment compositions in the calcareous fen were studied to gain a better understanding of the hydrologie System that sustains the rare vegetation. Groundwater in the fen is a calcium-magnesium-bicarbonate type with circumneutral pH values. The groundwater composition is the resuit of interactions among water, dissolved and gaseous carbon species, carbonates, and ion exchangers. Shallow groundwater is distinguished from deep groundwater by smaller concentrations of chloride, sulfate, magnesium, and sodium, and larger concentrations of calcium, bicarbonate, hydrogen sulfide, and ammonium. Magnesian calcite is the prevalent carbonate in unconsolidated sedimentary fill beneath the fen and is an important source and sink for dissolved calcium, magnesium, and inorganic carbon. Calcite concentrations just below the water table are small because aerobic and anaerobic oxidation of organic matter increase the partial pressure of carbon dioxide (PCO2), decrease pH, and cause calcite to dissolve. Thick calcite accumulations just above the water table, in the root zone of calciphile plants, result from water table fluctuations and attendant changes in PCO2. Groundwater beneath Savage Fen recharges in lakes and ponds south of the fen and upwells to the surface within the fen. Water at the water table is a mixture of upwelling groundwater and water near the surface that flows downslope from higher elevations in the fen. Changes in oxygen and hydrogen isotope compositions of shallow groundwater indicate that the proportion of upwelling groundwater in shallow groundwater decreases downgradient in the calcareous fen. Encroachment of reed grasses into the calcareous fen may reflect human-caused disturbances in the recharge area.

  5. Conservation and Biodiversity of Rich Fens

    DEFF Research Database (Denmark)

    Andersen, Dagmar Kappel

    2014-01-01

    Rich fen is a habitat type dependent on a constant supply of nutrient poor, calcium rich groundwater. A high, stable groundwater table, relatively high pH combined with nutrient poor conditions support a special and very species rich vegetation including many rare and threatened plant species. In...

  6. Formalized classification of European fen vegetation at the alliance level

    DEFF Research Database (Denmark)

    Peterka, Tomáš; Hájek, Michal; Jiroušek, Martin

    2017-01-01

    Aims Phytosociological classification of fen vegetation (Scheuchzerio palustris-Caricetea fuscae class) differs among European countries. Here we propose a unified vegetation classification of European fens at the alliance level, provide unequivocal assignment rules for individual vegetation plot...

  7. Combined metabolomic and correlation networks analyses reveal fumarase insufficiency altered amino acid metabolism.

    Science.gov (United States)

    Hou, Entai; Li, Xian; Liu, Zerong; Zhang, Fuchang; Tian, Zhongmin

    2018-04-01

    Fumarase catalyzes the interconversion of fumarate and l-malate in the tricarboxylic acid cycle. Fumarase insufficiencies were associated with increased levels of fumarate, decreased levels of malate and exacerbated salt-induced hypertension. To gain insights into the metabolism profiles induced by fumarase insufficiency and identify key regulatory metabolites, we applied a GC-MS based metabolomics platform coupled with a network approach to analyze fumarase insufficient human umbilical vein endothelial cells (HUVEC) and negative controls. A total of 24 altered metabolites involved in seven metabolic pathways were identified as significantly altered, and enriched for the biological module of amino acids metabolism. In addition, Pearson correlation network analysis revealed that fumaric acid, l-malic acid, l-aspartic acid, glycine and l-glutamic acid were hub metabolites according to Pagerank based on their three centrality indices. Alanine aminotransferase and glutamate dehydrogenase activities increased significantly in fumarase deficiency HUVEC. These results confirmed that fumarase insufficiency altered amino acid metabolism. The combination of metabolomics and network methods would provide another perspective on expounding the molecular mechanism at metabolomics level. Copyright © 2017 John Wiley & Sons, Ltd.

  8. Novel fen ecosystems in western North Carolina

    Science.gov (United States)

    Wilcox, J. D.

    2012-12-01

    Western North Carolina is mountainous, and groundwater flows from hillslope recharge zones to valley stream and spring discharge zones. Depending on surface topography and geologic conditions, the water table may approach or intersect the ground surface to form seepage wetlands, or fens. Fen ecosystems can be very sensitive to changes in land use, groundwater pumping, and upslope development. This presentation will focus on two sites where historical land use and human activity played important roles in creating or preserving fen ecosystems. Both sites now support—and are being managed to protect—federally endangered flora and fauna. The first site is home to Sarracenia oreophilia, an endangered pitcher plant that thrives on saturated soils with low nutrient content. The site's early history includes tree clearing, drain tile installation, and cattle grazing, while more recent management activities have included drain tile excavation, manual invasive removal, and prescribed burns. A 15-year water-level record indicates seasonal artesian conditions wet a 3m clay unit (K=2E-5 cm/sec) beneath the site, which is able to retain moisture during drier periods. Shorter "clay wetting periods" during drought years (1999-2000; 2007-2008) correspond to reduced clump counts in pitcher-plant surveys. The second site is a former aggregate quarry that now supports over 60 bog turtles (Clemmys muhlenbergii). The biggest threat to this site is encroachment of non-native and invasive multiflora rose (Rosa multiflora) and other large woody species. Management activities include manual removal and prescribed goat herbivory. Current efforts to characterize the springs, water-table, and surface-water flows will be used to detect changes in the future to the hydrologic regime in the fen.

  9. Disruption of retinoic acid receptor alpha reveals the growth promoter face of retinoic acid.

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    Giulia Somenzi

    2007-09-01

    Full Text Available Retinoic acid (RA, the bioactive derivative of Vitamin A, by epigenetically controlling transcription through the RA-receptors (RARs, exerts a potent antiproliferative effect on human cells. However, a number of studies show that RA can also promote cell survival and growth. In the course of one of our studies we observed that disruption of RA-receptor alpha, RARalpha, abrogates the RA-mediated growth-inhibitory effects and unmasks the growth-promoting face of RA (Ren et al., Mol. Cell. Biol., 2005, 25:10591. The objective of this study was to investigate whether RA can differentially govern cell growth, in the presence and absence of RARalpha, through differential regulation of the "rheostat" comprising ceramide (CER, the sphingolipid with growth-inhibitory activity, and sphingosine-1-phosphate (S1P, the sphingolipid with prosurvival activity.We found that functional inhibition of endogenous RARalpha in breast cancer cells by using either RARalpha specific antagonists or a dominant negative RARalpha mutant hampers on one hand the RA-induced upregulation of neutral sphingomyelinase (nSMase-mediated CER synthesis, and on the other hand the RA-induced downregulation of sphingosine kinase 1, SK1, pivotal for S1P synthesis. In association with RA inability to regulate the sphingolipid rheostat, cells not only survive, but also grow more in response to RA both in vitro and in vivo. By combining genetic, pharmacological and biochemical approaches, we mechanistically demonstrated that RA-induced growth is, at least in part, due to non-RAR-mediated activation of the SK1-S1P signaling.In the presence of functional RARalpha, RA inhibits cell growth by concertedly, and inversely, modulating the CER and S1P synthetic pathways. In the absence of a functional RARalpha, RA-in a non-RAR-mediated fashion-promotes cell growth by activating the prosurvival S1P signaling. These two distinct, yet integrated processes apparently concur to the growth-promoter effects

  10. Experimental acidification of a poor fen in northwestern Ontario: Effects on emergence of Chironomidae (Diptera)

    Energy Technology Data Exchange (ETDEWEB)

    Rosenberg, D.M.; Wiens, A.P.; Bilyj, B. [Department of Fisheries and Oceans, Winnipeg, MB (Canada). Central and Arctic Region; Armstrong, L. [Department of Fisheries and Oceans, Winnipeg, MB (Canada). Central and Arctic Region

    1995-10-01

    The effects of experimental acidification and N fertilization on chironomid emergence from a poor fen in northwestern Ontario were studied from 1984 to 1989. Experimental treatments did not affect the numbers of chironomids emerging weekly, the timing of emergence, or the species composition of emergence during the study period. Weekly emergence counts were higher (P<0.05) from the periphery of the fen than the central part. Total seasonal emergence was higher from an area that was previously burned than from the rest of that swamp, though the difference was not statistically significant. Stability of species composition, despite experimental treatments and physiographic differences in the fen, may be a widespread characteristic of Canadian acidic peatlands. 7 tabs., 4 figs., 23 refs.

  11. Elastoviscous Transitions of Articular Cartilage Reveal a Mechanism of Synergy between Lubricin and Hyaluronic Acid.

    Directory of Open Access Journals (Sweden)

    Edward D Bonnevie

    Full Text Available When lubricated by synovial fluid, articular cartilage provides some of the lowest friction coefficients found in nature. While it is known that macromolecular constituents of synovial fluid provide it with its lubricating ability, it is not fully understood how two of the main molecules, lubricin and hyaluronic acid, lubricate and interact with one another. Here, we develop a novel framework for cartilage lubrication based on the elastoviscous transition to show that lubricin and hyaluronic acid lubricate by distinct mechanisms. Such analysis revealed nonspecific interactions between these molecules in which lubricin acts to concentrate hyaluronic acid near the tissue surface and promotes a transition to a low friction regime consistent with the theory of viscous boundary lubrication. Understanding the mechanics of synovial fluid not only provides insight into the progression of diseases such as arthritis, but also may be applicable to the development of new biomimetic lubricants.

  12. Experimental restoration of a fen plant community after peat mining

    Energy Technology Data Exchange (ETDEWEB)

    Cobbaert, D.; Rochefort, L.; Price, J.S. [Univ. Laval, Sainte-Foy (Canada). Dept. de Phytologie

    2004-11-01

    Methods: The effectiveness of introducing fen plants with the application of donor diaspore material was tested. The donor diaspore material, containing seeds, rhizomes, moss fragments, and other plant propagules, was collected from two different types of natural fens. We tested whether the application of straw mulch would increase fen species cover and biodiversity compared to control plots without straw mulch. Terrace levels of different peat depths (15 cm, 40 cm, and 56 cm) were created to test the effects of different environmental site conditions on the success of re-vegetation. Results: Applying donor seed bank from natural fens was found to significantly increase fen plant cover and richness after the two growing seasons. Straw mulch proved to significantly increase fen plant richness. The intermediate terrace level (40 cm) had the highest fen plant establishment. Compared to reference sites, the low terrace level (15 cm) was richer in base cations, whereas the high terrace level (56 cm) was much drier. Conclusions: The application of donor diaspore material was demonstrated as an effective technique for establishing vascular fen plants. Further rewetting measures are considered necessary at the restoration site to create a fen ecosystem rather than simply restoring some fen species (Location: Riviere-du-Loup peatland, southern Quebec, Canada at 100 m a.s.l.)

  13. Metabolomic Analyses of Leishmania Reveal Multiple Species Differences and Large Differences in Amino Acid Metabolism.

    Directory of Open Access Journals (Sweden)

    Gareth D Westrop

    Full Text Available Comparative genomic analyses of Leishmania species have revealed relatively minor heterogeneity amongst recognised housekeeping genes and yet the species cause distinct infections and pathogenesis in their mammalian hosts. To gain greater information on the biochemical variation between species, and insights into possible metabolic mechanisms underpinning visceral and cutaneous leishmaniasis, we have undertaken in this study a comparative analysis of the metabolomes of promastigotes of L. donovani, L. major and L. mexicana. The analysis revealed 64 metabolites with confirmed identity differing 3-fold or more between the cell extracts of species, with 161 putatively identified metabolites differing similarly. Analysis of the media from cultures revealed an at least 3-fold difference in use or excretion of 43 metabolites of confirmed identity and 87 putatively identified metabolites that differed to a similar extent. Strikingly large differences were detected in their extent of amino acid use and metabolism, especially for tryptophan, aspartate, arginine and proline. Major pathways of tryptophan and arginine catabolism were shown to be to indole-3-lactate and arginic acid, respectively, which were excreted. The data presented provide clear evidence on the value of global metabolomic analyses in detecting species-specific metabolic features, thus application of this technology should be a major contributor to gaining greater understanding of how pathogens are adapted to infecting their hosts.

  14. Vacuum-ultraviolet circular dichroism of amino acids as revealed by synchrotron radiation spectrophotometer

    International Nuclear Information System (INIS)

    Matsuo, Koichi; Matsushima, Yosuke; Fukuyama, Takayuki; Gekko, Kunihiko; Senba, Shinya

    2002-01-01

    We succeeded in constructing a vacuum-ultraviolet circular dichroism (VUVCD) spectrophotometer with a small-scale synchrotron radiation source (0.7 GeV) at Hiroshima Synchrotron Radiation Center (HiSOR). This VUVCD system revealed for the first time the CD spectra of amino acids in aqueous media in the 310-140 nm region under high vacuum. These data, which cannot be observed by any types of existing CD spectrophotometers, now open a new field in the structural analysis of biomaterials on a basis of the higher energy transition of chromophores. (author)

  15. Efeito do tratamento térmico na concentração de carotenóides, compostos fenólicos, ácido ascórbico e capacidade antioxidante do suco de tangerina murcote Effect of thermal treatment on the carotenoid, phenolic compound and ascorbic acid concentrations, and the antioxidant capacity of murcott tangerine juice

    Directory of Open Access Journals (Sweden)

    André de Souza Dutra

    2012-09-01

    Full Text Available Neste estudo, avaliou-se o efeito do tratamento térmico do suco de tangerina murcote em relação ao teor de carotenóides totais, ao perfil de carotenóides (luteína, zeaxantina, β-criptoxantina e β-caroteno, aos compostos fenólicos totais, ao ácido ascórbico e à capacidade antioxidante. No processo, utilizou-se um trocador de calor tubular, sendo avaliados 11 tratamentos seguindo um ensaio fatorial completo 2² com três repetições no ponto central, com quatro pontos axiais e uma região de observação de 88 a 100 ºC e 16 a 44 s. O teor de caratenóides totais decresceu de forma significativa em quase todos os tratamentos aplicados, se comparado ao valor encontrado para o suco in natura. A maioria dos tratamentos não reduziu de forma significativa os teores dos caratenóides luteína, zeaxantina e β-criptoxantina. Além disso, o teor de β-caroteno não sofreu alterações significativas em todos os tratamentos avaliados. A análise de variância mostrou que, para os caratenóides, não ocorreram interações significativas entre as variáveis temperatura e tempo. Os teores de ácido ascórbico e compostos fenólicos totais apresentaram reduções em seis condições avaliadas, ao passo que, em quatro, observou-se um aumento dos teores de compostos fenólicos totais, causado provavelmente pela evaporação da água presente no suco. A maior redução do teor de ácido ascórbico e o maior aumento para compostos fenólicos totais foi observado para o binômio 100 ºC/30 s. O teor de ácido ascórbico sofreu de forma significativa a influência da temperatura e esse processo de degradação pode ser descrito por meio de um modelo quadrático. Todos os tratamentos utilizados reduziram a capacidade antioxidante do suco, sendo mais intensa para o binômio 100 ºC/30 s. As variações observadas não alteraram de maneira considerável as características nutricionais do suco e os tratamentos térmicos realizados a 94 ºC por 16 a 44 s

  16. Water flow and solute transport in floating fen root mats

    Science.gov (United States)

    Stofberg, Sija F.; EATM van der Zee, Sjoerd

    2015-04-01

    Floating fens are valuable wetlands, found in North-Western Europe, that are formed by floating root mats when old turf ponds are colonized by plants. These terrestrialization ecosystems are known for their biodiversity and the presence of rare plant species, and the root mats reveal different vegetation zones at a small scale. The vegetation zones are a result of strong gradients in abiotic conditions, including groundwater dynamics, nutrients and pH. To prevent irreversible drought effects such as land subsidence and mineralization of peat, water management involves import of water from elsewhere to maintain constant surface water levels. Imported water may have elevated levels of salinity during dry summers, and salt exposure may threaten the vegetation. To assess the risk of exposure of the rare plant species to salinity, the hydrology of such root mats must be understood. Physical properties of root mats have scarcely been investigated. We have measured soil characteristics, hydraulic conductivity, vertical root mat movement and groundwater dynamics in a floating root mat in the nature reserve Nieuwkoopse Plassen, in the Netherlands. The root mat mostly consists of roots and organic material, in which the soil has a high saturated water content, and strongly varies in its stage of decomposition. We have found a distinct negative correlation between degree of decomposition and hydraulic conductivity, similar to observations for bogs in the literature. Our results show that the relatively young, thin edge of the root mat that colonizes the surface water has a high hydraulic conductivity and floats in the surface water, resulting in very small groundwater fluctuations within the root mat. The older part of the root mat, that is connected to the deeper peat layers is hydrologically more isolated and the material has a lower conductivity. Here, the groundwater fluctuates strongly with atmospheric forcing. The zones of hydraulic properties and vegetation, appear to

  17. Interaction between APC and Fen1 during breast carcinogenesis.

    Science.gov (United States)

    Narayan, Satya; Jaiswal, Aruna S; Law, Brian K; Kamal, Mohammad A; Sharma, Arun K; Hromas, Robert A

    2016-05-01

    Aberrant DNA base excision repair (BER) contributes to malignant transformation. However, inter-individual variations in DNA repair capacity plays a key role in modifying breast cancer risk. We review here emerging evidence that two proteins involved in BER - adenomatous polyposis coli (APC) and flap endonuclease 1 (Fen1) - promote the development of breast cancer through novel mechanisms. APC and Fen1 expression and interaction is increased in breast tumors versus normal cells, APC interacts with and blocks Fen1 activity in Pol-β-directed LP-BER, and abrogation of LP-BER is linked with cigarette smoke condensate-induced transformation of normal breast epithelial cells. Carcinogens increase expression of APC and Fen1 in spontaneously immortalized human breast epithelial cells, human colon cancer cells, and mouse embryonic fibroblasts. Since APC and Fen1 are tumor suppressors, an increase in their levels could protect against carcinogenesis; however, this does not seem to be the case. Elevated Fen1 levels in breast and lung cancer cells may reflect the enhanced proliferation of cancer cells or increased DNA damage in cancer cells compared to normal cells. Inactivation of the tumor suppressor functions of APC and Fen1 is due to their interaction, which may act as a susceptibility factor for breast cancer. The increased interaction of APC and Fen1 may occur due to polypmorphic and/or mutational variation in these genes. Screening of APC and Fen1 polymorphic and/or mutational variations and APC/Fen1 interaction may permit assessment of individual DNA repair capability and the risk for breast cancer development. Such individuals might lower their breast cancer risk by reducing exposure to carcinogens. Stratifying individuals according to susceptibility would greatly assist epidemiologic studies of the impact of suspected environmental carcinogens. Additionally, a mechanistic understanding of the interaction of APC and Fen1 may provide the basis for developing new and

  18. Cation–Anion Interactions within the Nucleic Acid Ion Atmosphere Revealed by Ion Counting

    Science.gov (United States)

    Gebala, Magdalena; Giambasu, George M.; Lipfert, Jan; Bisaria, Namita; Bonilla, Steve; Li, Guangchao; York, Darrin M.; Herschlag, Daniel

    2016-01-01

    The ion atmosphere is a critical structural, dynamic, and energetic component of nucleic acids that profoundly affects their interactions with proteins and ligands. Experimental methods that “count” the number of ions thermodynamically associated with the ion atmosphere allow dissection of energetic properties of the ion atmosphere, and thus provide direct comparison to theoretical results. Previous experiments have focused primarily on the cations that are attracted to nucleic acid polyanions, but have also showed that anions are excluded from the ion atmosphere. Herein, we have systematically explored the properties of anion exclusion, testing the zeroth-order model that anions of different identity are equally excluded due to electrostatic repulsion. Using a series of monovalent salts, we find, surprisingly, that the extent of anion exclusion and cation inclusion significantly depends on salt identity. The differences are prominent at higher concentrations and mirror trends in mean activity coefficients of the electrolyte solutions. Salts with lower activity coefficients exhibit greater accumulation of both cations and anions within the ion atmosphere, strongly suggesting that cation–anion correlation effects are present in the ion atmosphere and need to be accounted for to understand electrostatic interactions of nucleic acids. To test whether the effects of cation–anion correlations extend to nucleic acid kinetics and thermodynamics, we followed the folding of P4–P6, a domain of the Tetrahymena group I ribozyme, via single-molecule fluorescence resonance energy transfer in solutions with different salts. Solutions of identical concentration but lower activity gave slower and less favorable folding. Our results reveal hitherto unknown properties of the ion atmosphere and suggest possible roles of oriented ion pairs or anion-bridged cations in the ion atmosphere for electrolyte solutions of salts with reduced activity. Consideration of these new

  19. Rate-determining Step of Flap Endonuclease 1 (FEN1) Reflects a Kinetic Bias against Long Flaps and Trinucleotide Repeat Sequences.

    Science.gov (United States)

    Tarantino, Mary E; Bilotti, Katharina; Huang, Ji; Delaney, Sarah

    2015-08-21

    Flap endonuclease 1 (FEN1) is a structure-specific nuclease responsible for removing 5'-flaps formed during Okazaki fragment maturation and long patch base excision repair. In this work, we use rapid quench flow techniques to examine the rates of 5'-flap removal on DNA substrates of varying length and sequence. Of particular interest are flaps containing trinucleotide repeats (TNR), which have been proposed to affect FEN1 activity and cause genetic instability. We report that FEN1 processes substrates containing flaps of 30 nucleotides or fewer at comparable single-turnover rates. However, for flaps longer than 30 nucleotides, FEN1 kinetically discriminates substrates based on flap length and flap sequence. In particular, FEN1 removes flaps containing TNR sequences at a rate slower than mixed sequence flaps of the same length. Furthermore, multiple-turnover kinetic analysis reveals that the rate-determining step of FEN1 switches as a function of flap length from product release to chemistry (or a step prior to chemistry). These results provide a kinetic perspective on the role of FEN1 in DNA replication and repair and contribute to our understanding of FEN1 in mediating genetic instability of TNR sequences. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

  20. Omega-3 Fatty acids and inflammation: novel interactions reveal a new step in neutrophil recruitment.

    Directory of Open Access Journals (Sweden)

    Samantha P Tull

    2009-08-01

    Full Text Available Inflammation is a physiological response to tissue trauma or infection, but leukocytes, which are the effector cells of the inflammatory process, have powerful tissue remodelling capabilities. Thus, to ensure their precise localisation, passage of leukocytes from the blood into inflamed tissue is tightly regulated. Recruitment of blood borne neutrophils to the tissue stroma occurs during early inflammation. In this process, peptide agonists of the chemokine family are assumed to provide a chemotactic stimulus capable of supporting the migration of neutrophils across vascular endothelial cells, through the basement membrane of the vessel wall, and out into the tissue stroma. Here, we show that, although an initial chemokine stimulus is essential for the recruitment of flowing neutrophils by endothelial cells stimulated with the inflammatory cytokine tumour necrosis factor-alpha, transit of the endothelial monolayer is regulated by an additional and downstream stimulus. This signal is supplied by the metabolism of the omega-6-polyunsaturated fatty acid (n-6-PUFA, arachidonic acid, into the eicosanoid prostaglandin-D(2 (PGD(2 by cyclooxygenase (COX enzymes. This new step in the neutrophil recruitment process was revealed when the dietary n-3-PUFA, eicosapentaenoic acid (EPA, was utilised as an alternative substrate for COX enzymes, leading to the generation of PGD(3. This alternative series eicosanoid inhibited the migration of neutrophils across endothelial cells by antagonising the PGD(2 receptor. Here, we describe a new step in the neutrophil recruitment process that relies upon a lipid-mediated signal to regulate the migration of neutrophils across endothelial cells. PGD(2 signalling is subordinate to the chemokine-mediated activation of neutrophils, but without the sequential delivery of this signal, neutrophils fail to penetrate the endothelial cell monolayer. Importantly, the ability of the dietary n-3-PUFA, EPA, to inhibit this process not

  1. Polyploid genome of Camelina sativa revealed by isolation of fatty acid synthesis genes

    Directory of Open Access Journals (Sweden)

    Shewmaker Christine K

    2010-10-01

    Full Text Available Abstract Background Camelina sativa, an oilseed crop in the Brassicaceae family, has inspired renewed interest due to its potential for biofuels applications. Little is understood of the nature of the C. sativa genome, however. A study was undertaken to characterize two genes in the fatty acid biosynthesis pathway, fatty acid desaturase (FAD 2 and fatty acid elongase (FAE 1, which revealed unexpected complexity in the C. sativa genome. Results In C. sativa, Southern analysis indicates the presence of three copies of both FAD2 and FAE1 as well as LFY, a known single copy gene in other species. All three copies of both CsFAD2 and CsFAE1 are expressed in developing seeds, and sequence alignments show that previously described conserved sites are present, suggesting that all three copies of both genes could be functional. The regions downstream of CsFAD2 and upstream of CsFAE1 demonstrate co-linearity with the Arabidopsis genome. In addition, three expressed haplotypes were observed for six predicted single-copy genes in 454 sequencing analysis and results from flow cytometry indicate that the DNA content of C. sativa is approximately three-fold that of diploid Camelina relatives. Phylogenetic analyses further support a history of duplication and indicate that C. sativa and C. microcarpa might share a parental genome. Conclusions There is compelling evidence for triplication of the C. sativa genome, including a larger chromosome number and three-fold larger measured genome size than other Camelina relatives, three isolated copies of FAD2, FAE1, and the KCS17-FAE1 intergenic region, and three expressed haplotypes observed for six predicted single-copy genes. Based on these results, we propose that C. sativa be considered an allohexaploid. The characterization of fatty acid synthesis pathway genes will allow for the future manipulation of oil composition of this emerging biofuel crop; however, targeted manipulations of oil composition and general

  2. Targeted metabolomics analysis reveals the association between maternal folic acid supplementation and fatty acids and amino acids profiles in rat pups.

    Science.gov (United States)

    Liu, Zhipeng; Liu, Rui; Chou, Jing; Yu, Jiaying; Liu, Xiaowei; Sun, Changhao; Li, Ying; Liu, Liyan

    2018-07-15

    Maternal diet during pregnancy can influence offspring's health by affecting development and metabolism. This study aimed to analyze the influence of maternal folic acid (FA) supplementation on the metabolism of rat pups using targeted metabolomics. Twenty female rats were randomly assigned to a FA supplementation (FAS group, n = 10) or control group (n = 10), which were fed AIN93G diet with 2 or 10 mg/kg FA, respectively. We then measured amino acids and their derivatives, biogenic amines, and fatty acids in the female rats and their pups by ultra-high performance liquid chromatography-triple quadrupole mass spectrometry (UHPLC/MS-MS) and gas chromatography-mass spectrometry (GC/MS-MS). In maternal rats, the significant changes of three metabolites (proline, γ-aminobutyric acid and esterified octadecatetraenoic acid, P acids (leucine, isoleucine, serine, proline) were obtained in FAS pups. Furthermore, there were the decreased esterified fatty acids (arachidonic acid, eicosapentaenoic acid, and docosatetraenoic acid) and free fatty acids (oleic acid, linoleic acid, γ-linolenic acid, octadecatetraenoic acid, arachidonic acid, eicosapentaenoic acid and selacholeic acid) in FAS pups. Metabolic changes in the FAS pups were characterized by changes in fatty acids and amino acids. These results suggested that FA supplementation during pregnancy influenced amino acids and fatty acids metabolism in rat pups. This study provides new insights into the regulation of amino acids and fatty acids metabolism during early life. Copyright © 2018 Elsevier B.V. All rights reserved.

  3. CO dissociation on magnetic Fen clusters

    KAUST Repository

    Jedidi, Abdesslem

    2014-01-01

    This work theoretically investigates the CO dissociation on Fen nanoparticles, for n in the range of 1-65, focusing on size dependence in the context of the initial step of the Fischer-Tropsch reaction. CO adsorbs molecularly through its C-end on a triangular facet of the nanoparticle. Dissociation becomes easier when the cluster size increases. Then, the C atom is bonded to a square facet that is generated as a result of the adsorption if it does not yet exist in the bare cluster, while the O atom is adsorbed on a triangular facet. In the most stable situation, the two adsorbed atoms remain close together, both having in common one shared first-neighbor iron atom. There is a partial spin quenching of the neighboring Fe atoms, which become more positively charged than the other Fe atoms. The shared surface iron atom resembles a metal-cation from a complex. Despite the small size of the iron cluster considered, fluctuations due to specific configurations do not influence properties for n > 25 and global trends seem significant.

  4. Comparative Transcriptomics Reveals Jasmonic Acid-Associated Metabolism Related to Cotton Fiber Initiation.

    Directory of Open Access Journals (Sweden)

    Liman Wang

    Full Text Available Analysis of mutants and gene expression patterns provides a powerful approach for investigating genes involved in key stages of plant fiber development. In this study, lintless-fuzzless XinWX and linted-fuzzless XinFLM with a single genetic locus difference for lint were used to identify differentially expressed genes. Scanning electron microscopy showed fiber initiation in XinFLM at 0 days post anthesis (DPA. Fiber transcriptional profiling of the lines at three initiation developmental stages (-1, 0, 1 DPA was performed using an oligonucleotide microarray. Loop comparisons of the differentially expressed genes within and between the lines was carried out, and functional classification and enrichment analysis showed that gene expression patterns during fiber initiation were heavily associated with hormone metabolism, transcription factor regulation, lipid transport, and asparagine biosynthetic processes, as previously reported. Further, four members of the allene-oxide cyclase (AOC family that function in jasmonate biosynthesis were parallel up-regulation in fiber initiation, especially at -1 DPA, compared to other tissues and organs in linted-fuzzed TM-1. Real time-quantitative PCR (RT-qPCR analysis in different fiber mutant lines revealed that AOCs were up-regulated higher at -1 DPA in lintless-fuzzless than that in linted-fuzzless and linted-fuzzed materials, and transcription of the AOCs was increased under jasmonic acid (JA treatment. Expression analysis of JA biosynthesis-associated genes between XinWX and XinFLM showed that they were up-regulated during fiber initiation in the fuzzless-lintless mutant. Taken together, jasmonic acid-associated metabolism was related to cotton fiber initiation. Parallel up-regulation of AOCs expression may be important for normal fiber initiation development, while overproduction of AOCs might disrupt normal fiber development.

  5. The synthesis of theo fen containing bile acids

    International Nuclear Information System (INIS)

    Kadirov, A.Kh.; Khaydarov, K.Kh.; Giyosov, A.Sh.

    2000-01-01

    In this chapter of book authors made conclusion that synthesized compounds (V-V III) have ability to dissolve gall-cholesterol stones. These compounds actually have this effect, but at the same time observe the increase of toxicity of these matters

  6. Synergistic increase of oxygen reduction favourable Fe-N coordination structures in a ternary hybrid of carbon nanospheres/carbon nanotubes/graphene sheets.

    Science.gov (United States)

    Zhang, Shiming; Liu, Bin; Chen, Shengli

    2013-11-14

    A Fe/N co-doped ternary nanocarbon hybrid, with uniform bamboo-like carbon nanotubes (CNTs) in situ grown on/between the single/few-layer graphene sheets interspaced by carbon nanosphere aggregates, was prepared through a one-pot heat treatment of a precursor mixture containing graphene oxide, Vulcan XC-72 carbon nanospheres, nitrogen rich melamine and small amounts of Fe ions. Physical characterization including electron microscopic images, N2 adsorption-desorption isotherms, pore size distribution, XPS, XRD, Mössbauer spectra, and EDX revealed that the 0-D/1-D/2-D ternary hybrid architecture not only offered an optimized morphology for high dispersion of each nanocarbon moiety, while the carbon nanosphere interspaced graphene sheets have provided a platform for efficient reaction between Fe ions and melamine molecules, resulting in uniform nucleation and growth of CNTs and formation of high density Fe-N coordination assemblies that have been believed to be the active centers for the oxygen reduction reaction (ORR) in carbon-based nonprecious metal electrocatalysts. In the absence of graphene oxides or carbon nanospheres, a similar heat treatment was found to result in large amounts of elemental Fe and Fe carbides and entangled CNTs with wide diameter distributions. As a result, the ternary Fe/N-doped nanocarbon hybrid exhibits ORR activity much higher than the Fe-N doped single or binary nanocarbon materials prepared under similar heat treatment conditions, and approaching that of the state-of-the-art carbon-supported platinum catalyst (Pt/C) in acidic media, as well as superior stability and methanol tolerance to Pt/C.

  7. Ecological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics.

    Science.gov (United States)

    Hua, Zheng-Shuang; Han, Yu-Jiao; Chen, Lin-Xing; Liu, Jun; Hu, Min; Li, Sheng-Jin; Kuang, Jia-Liang; Chain, Patrick S G; Huang, Li-Nan; Shu, Wen-Sheng

    2015-06-01

    High-throughput sequencing is expanding our knowledge of microbial diversity in the environment. Still, understanding the metabolic potentials and ecological roles of rare and uncultured microbes in natural communities remains a major challenge. To this end, we applied a 'divide and conquer' strategy that partitioned a massive metagenomic data set (>100 Gbp) into subsets based on K-mer frequency in sequence assembly to a low-diversity acid mine drainage (AMD) microbial community and, by integrating with an additional metatranscriptomic assembly, successfully obtained 11 draft genomes most of which represent yet uncultured and/or rare taxa (relative abundance 90%) and its metabolic potentials and gene expression profile, providing initial molecular insights into the ecological role of these lesser known, but potentially important, microorganisms in the AMD environment. Gene transcriptional analysis of the active taxa revealed major metabolic capabilities executed in situ, including carbon- and nitrogen-related metabolisms associated with syntrophic interactions, iron and sulfur oxidation, which are key in energy conservation and AMD generation, and the mechanisms of adaptation and response to the environmental stresses (heavy metals, low pH and oxidative stress). Remarkably, nitrogen fixation and sulfur oxidation were performed by the rare taxa, indicating their critical roles in the overall functioning and assembly of the AMD community. Our study demonstrates the potential of the 'divide and conquer' strategy in high-throughput sequencing data assembly for genome reconstruction and functional partitioning analysis of both dominant and rare species in natural microbial assemblages.

  8. Phenolic Profiling of Caffeic Acid O-Methyltransferase-Deficient Poplar Reveals Novel Benzodioxane Oligolignols1

    Science.gov (United States)

    Morreel, Kris; Ralph, John; Lu, Fachuang; Goeminne, Geert; Busson, Roger; Herdewijn, Piet; Goeman, Jan L.; Van der Eycken, Johan; Boerjan, Wout; Messens, Eric

    2004-01-01

    Caffeic acid O-methyltransferase (COMT) catalyzes preferentially the methylation of 5-hydroxyconiferaldehyde to sinapaldehyde in monolignol biosynthesis. Here, we have compared HPLC profiles of the methanol-soluble phenolics fraction of xylem tissue from COMT-deficient and control poplars (Populus spp.), using statistical analysis of the peak heights. COMT down-regulation results in significant concentration differences for 25 of the 91 analyzed peaks. Eight peaks were exclusively detected in COMT-deficient poplar, of which four could be purified for further identification using mass spectrometry/mass spectrometry, nuclear magnetic resonance, and spiking of synthesized reference compounds. These new compounds were derived from 5-hydroxyconiferyl alcohol or 5-hydroxyconiferaldehyde and were characterized by benzodioxane moieties, a structural type that is also increased in the lignins of COMT-deficient plants. One of these four benzodioxanes amounted to the most abundant oligolignol in the HPLC profile. Furthermore, all of the differentially accumulating oligolignols involving sinapyl units were either reduced in abundance or undetectable. The concentration levels of all identified oligolignols were in agreement with the relative supply of monolignols and with their chemical coupling propensities, which supports the random coupling hypothesis. Chiral HPLC analysis of the most abundant benzodioxane dimer revealed the presence of both enantiomers in equal amounts, indicating that they were formed by radical coupling reactions under simple chemical control rather than guided by dirigent proteins. PMID:15563622

  9. Phenolic profiling of caffeic acid O-methyltransferase-deficient poplar reveals novel benzodioxane oligolignols.

    Science.gov (United States)

    Morreel, Kris; Ralph, John; Lu, Fachuang; Goeminne, Geert; Busson, Roger; Herdewijn, Piet; Goeman, Jan L; Van der Eycken, Johan; Boerjan, Wout; Messens, Eric

    2004-12-01

    Caffeic acid O-methyltransferase (COMT) catalyzes preferentially the methylation of 5-hydroxyconiferaldehyde to sinapaldehyde in monolignol biosynthesis. Here, we have compared HPLC profiles of the methanol-soluble phenolics fraction of xylem tissue from COMT-deficient and control poplars (Populus spp.), using statistical analysis of the peak heights. COMT down-regulation results in significant concentration differences for 25 of the 91 analyzed peaks. Eight peaks were exclusively detected in COMT-deficient poplar, of which four could be purified for further identification using mass spectrometry/mass spectrometry, nuclear magnetic resonance, and spiking of synthesized reference compounds. These new compounds were derived from 5-hydroxyconiferyl alcohol or 5-hydroxyconiferaldehyde and were characterized by benzodioxane moieties, a structural type that is also increased in the lignins of COMT-deficient plants. One of these four benzodioxanes amounted to the most abundant oligolignol in the HPLC profile. Furthermore, all of the differentially accumulating oligolignols involving sinapyl units were either reduced in abundance or undetectable. The concentration levels of all identified oligolignols were in agreement with the relative supply of monolignols and with their chemical coupling propensities, which supports the random coupling hypothesis. Chiral HPLC analysis of the most abundant benzodioxane dimer revealed the presence of both enantiomers in equal amounts, indicating that they were formed by radical coupling reactions under simple chemical control rather than guided by dirigent proteins.

  10. Optimized Jasmonic Acid Production by Lasiodiplodia theobromae Reveals Formation of Valuable Plant Secondary Metabolites.

    Directory of Open Access Journals (Sweden)

    Felipe Eng

    Full Text Available Jasmonic acid is a plant hormone that can be produced by the fungus Lasiodiplodia theobromae via submerged fermentation. From a biotechnological perspective jasmonic acid is a valuable feedstock as its derivatives serve as important ingredients in different cosmetic products and in the future it may be used for pharmaceutical applications. The objective of this work was to improve the production of jasmonic acid by L. theobromae strain 2334. We observed that jasmonic acid formation is dependent on the culture volume. Moreover, cultures grown in medium containing potassium nitrate as nitrogen source produced higher amounts of jasmonic acid than analogous cultures supplemented with ammonium nitrate. When cultivated under optimal conditions for jasmonic acid production, L. theobromae secreted several secondary metabolites known from plants into the medium. Among those we found 3-oxo-2-(pent-2-enyl-cyclopentane-1-butanoic acid (OPC-4 and hydroxy-jasmonic acid derivatives, respectively, suggesting that fungal jasmonate metabolism may involve similar reaction steps as that of plants. To characterize fungal growth and jasmonic acid-formation, we established a mathematical model describing both processes. This model may form the basis of industrial upscaling attempts. Importantly, it showed that jasmonic acid-formation is not associated to fungal growth. Therefore, this finding suggests that jasmonic acid, despite its enormous amount being produced upon fungal development, serves merely as secondary metabolite.

  11. Evolutionary engineering reveals divergent paths when yeast is adapted to different acidic environments

    DEFF Research Database (Denmark)

    Fletcher, Eugene; Feizi, Amir; Bisschops, Markus M. M.

    2017-01-01

    Tolerance of yeast to acid stress is important for many industrial processes including organic acid production. Therefore, elucidating the molecular basis of long term adaptation to acidic environments will be beneficial for engineering production strains to thrive under such harsh conditions....... Previous studies using gene expression analysis have suggested that both organic and inorganic acids display similar responses during short term exposure to acidic conditions. However, biological mechanisms that will lead to long term adaptation of yeast to acidic conditions remains unknown and whether...... factor in the evolutionary process since cells evolved on two different carbon sources (raffinose and glucose) generated a different set of mutations in response to the presence of lactic acid. Therefore, different strategies are required for a rational design of low pH tolerant strains depending...

  12. Characterization of Fen-Daqu Through Multivariate Statistical Analysis of H-1 NMR Spectroscopic Data

    NARCIS (Netherlands)

    Van-Diep, L.; Zheng, X.; Ma, K.; Chen, J.Y.; Han, B.Z.; Nout, M.J.R.

    2011-01-01

    J. Inst. Brew. 117(4), 516-522, 2011 Fen liquor is typical of Chinese light-flavour liquor (alcoholic spirit), which is fermented from sorghum with Fen-Daqu powder. Fen-Daqu is a saccharifying agent and fermentation starter in this fermentation process and in Fen traditional vinegar. To investigate

  13. Fens and their rare plants in the Beartooth Mountains, Shoshone National Forest, Wyoming

    Science.gov (United States)

    Bonnie Heidel; Walter Fertig; Sabine Mellmann-Brown; Kent E. Houston; Kathleen A. Dwire

    2017-01-01

    Fens are common wetlands in the Beartooth Mountains on the Shoshone National Forest, Clarks Fork Ranger District, in Park County, Wyoming. Fens harbor plant species found in no other habitats, and some rare plants occurring in Beartooth fens are found nowhere else in Wyoming. This report summarizes the studies on Beartooth fens from 1962 to 2009, which have contributed...

  14. Revealing Nucleic Acid Mutations Using Förster Resonance Energy Transfer-Based Probes

    Directory of Open Access Journals (Sweden)

    Nina P. L. Junager

    2016-07-01

    Full Text Available Nucleic acid mutations are of tremendous importance in modern clinical work, biotechnology and in fundamental studies of nucleic acids. Therefore, rapid, cost-effective and reliable detection of mutations is an object of extensive research. Today, Förster resonance energy transfer (FRET probes are among the most often used tools for the detection of nucleic acids and in particular, for the detection of mutations. However, multiple parameters must be taken into account in order to create efficient FRET probes that are sensitive to nucleic acid mutations. In this review; we focus on the design principles for such probes and available computational methods that allow for their rational design. Applications of advanced, rationally designed FRET probes range from new insights into cellular heterogeneity to gaining new knowledge of nucleic acid structures directly in living cells.

  15. Impacts of oil sands process water on fen plants: Implications for plant selection in required reclamation projects

    International Nuclear Information System (INIS)

    Pouliot, Rémy; Rochefort, Line; Graf, Martha D.

    2012-01-01

    Fen plant growth in peat contaminated with groundwater discharges of oil sands process water (OSPW) was assessed in a greenhouse over two growing seasons. Three treatments (non-diluted OSPW, diluted OSPW and rainwater) were tested on five vascular plants and four mosses. All vascular plants tested can grow in salinity and naphthenic acids levels currently produced by oil sands activity in northwestern Canada. No stress sign was observed after both seasons. Because of plant characteristics, Carex species (C. atherodes and C. utriculata) and Triglochin maritima would be more useful for rapidly restoring vegetation and creating a new peat-accumulating system. Groundwater discharge of OSPW proved detrimental to mosses under dry conditions and ensuring adequate water levels would be crucial in fen creation following oil sands exploitation. Campylium stellatum would be the best choice to grow in contaminated areas and Bryum pseudotriquetrum might be interesting as it has spontaneously regenerated in all treatments. - Highlights: ► Fen plant growth was assessed under groundwater discharges of oil sands process water. ► Sedge and grass species were not stressed after two growing seasons in greenhouse. ► Carex species and Triglochin maritima would be helpful in created contaminated fens. ► In dry conditions, contaminated groundwater discharge was detrimental for mosses. ► Campylium stellatum would be the best choice in created fens with contaminated water. - Sedges and grasses tolerated the contact with oil sands process water and could probably grow well in contaminated created fens, but mosses were particularly affected under dry conditions.

  16. Structure of the Cyanuric Acid Hydrolase TrzD Reveals Product Exit Channel.

    Science.gov (United States)

    Bera, Asim K; Aukema, Kelly G; Elias, Mikael; Wackett, Lawrence P

    2017-03-27

    Cyanuric acid hydrolases are of industrial importance because of their use in aquatic recreational facilities to remove cyanuric acid, a stabilizer for the chlorine. Degradation of excess cyanuric acid is necessary to maintain chlorine disinfection in the waters. Cyanuric acid hydrolase opens the cyanuric acid ring hydrolytically and subsequent decarboxylation produces carbon dioxide and biuret. In the present study, we report the X-ray structure of TrzD, a cyanuric acid hydrolase from Acidovorax citrulli. The crystal structure at 2.19 Å resolution shows a large displacement of the catalytic lysine (Lys163) in domain 2 away from the active site core, whereas the two other active site lysines from the two other domains are not able to move. The lysine displacement is proposed here to open up a channel for product release. Consistent with that, the structure also showed two molecules of the co-product, carbon dioxide, one in the active site and another trapped in the proposed exit channel. Previous data indicated that the domain 2 lysine residue plays a role in activating an adjacent serine residue carrying out nucleophilic attack, opening the cyanuric acid ring, and the mobile lysine guides products through the exit channel.

  17. Fen ecohydrologic trajectories in response to groundwater drawdown with edaphic, floristic, and hydrologic feedbacks

    Science.gov (United States)

    Booth, E.; Steven, L. I.; Bart, D.

    2017-12-01

    Calcareous fens are unique and often isolated ecosystems of high conservation value worldwide because they provide habitat for many rare plant and animal species. Their identity is inextricably linked to an absolute dependence on a consistent discharge of groundwater that saturates the near surface for most of the growing season leading to the accumulation of carbon as peat or tufa and sequestration of nutrients. The stresses resulting from consistent saturation and low-nutrient availability result in high native plant diversity including very high rare species richness compared to other ecosystems. Decreases in the saturation stress by reduced groundwater inputs (e.g., from nearby pumping) can result in losses of native diversity, decreases in rare-species abundance, and increased invasion by non-native species. As such, fen ecosystems are particularly susceptible to changes in groundwater conditions including reduction in water levels due to nearby groundwater pumping. Trajectories of degradation are complex due to feedbacks between loss of soil organic carbon, changes in soil properties, and plant water use. We present a model of an archetype fen that couples a hydrological niche model with a variably-saturated groundwater flow model to predict changes in vegetation composition in response to different groundwater drawdown scenarios (step change, declining trend, and periodic drawdown during dry periods). The model also includes feedbacks among vegetation composition, plant water use, and soil properties. The hydrological niche models (using surface soil moisture as predictor) and relationships between vegetation composition, plant water use (via stomatal conductance and leaf-area index), and soil hydraulic properties (van Genuchten parameters) were determined based on data collected from six fens in Wisconsin under various states of degradation. Results reveal a complex response to drawdown and provide insight into other ecosystems with linkages between the

  18. Chemoproteomic Profiling of Acetanilide Herbicides Reveals Their Role in Inhibiting Fatty Acid Oxidation.

    Science.gov (United States)

    Counihan, Jessica L; Duckering, Megan; Dalvie, Esha; Ku, Wan-Min; Bateman, Leslie A; Fisher, Karl J; Nomura, Daniel K

    2017-03-17

    Acetanilide herbicides are among the most widely used pesticides in the United States, but their toxicological potential and mechanisms remain poorly understood. Here, we have used chemoproteomic platforms to map proteome-wide cysteine reactivity of acetochlor (AC), the most widely used acetanilide herbicide, in vivo in mice. We show that AC directly reacts with >20 protein targets in vivo in mouse liver, including the catalytic cysteines of several thiolase enzymes involved in mitochondrial and peroxisomal fatty acid oxidation. We show that the fatty acids that are not oxidized, due to impaired fatty acid oxidation, are instead diverted into other lipid pathways, resulting in heightened free fatty acids, triglycerides, cholesteryl esters, and other lipid species in the liver. Our findings show the utility of chemoproteomic approaches for identifying novel mechanisms of toxicity associated with environmental chemicals like acetanilide herbicides.

  19. Global metabolomic profiling reveals an association of metal fume exposure and plasma unsaturated fatty acids.

    Directory of Open Access Journals (Sweden)

    Yongyue Wei

    Full Text Available Welding-associated air pollutants negatively affect the health of exposed workers; however, their molecular mechanisms in causing disease remain largely unclear. Few studies have systematically investigated the systemic toxic effects of welding fumes on humans.To explore the effects of welding fumes on the plasma metabolome, and to identify biomarkers for risk assessment of welding fume exposure.The two-stage, self-controlled exploratory study included 11 boilermakers from a 2011 discovery panel and 8 boilermakers from a 2012 validation panel. Plasma samples were collected pre- and post-welding fume exposure and analyzed by chromatography/mass spectrometry.Eicosapentaenoic or docosapentaenoic acid metabolic changes post-welding were significantly associated with particulate (PM2.5 exposure (p<0.05. The combined analysis by linear mixed-effects model showed that exposure was associated with a statistically significant decline in metabolite change of eicosapentaenoic acid [β(95% CI = -0.013(-0.022 ≈ -0.004; p = 0.005], docosapentaenoic acid n3 [β(95% CI = -0.010(-0.018 ≈ -0.002; p = 0.017], and docosapentaenoic acid n6 [β(95% CI = -0.007(-0.013 ≈ -0.001; p = 0.021]. Pathway analysis identified an association of the unsaturated fatty acid pathway with exposure (p Study-2011 = 0.025; p Study-2012 = 0.021; p Combined = 0.009. The functional network built by these fatty acids and their interactive genes contained significant enrichment of genes associated with various diseases, including neoplasms, cardiovascular diseases, and lipid metabolism disorders.High-dose exposure of metal welding fumes decreases unsaturated fatty acids with an exposure-response relationship. This alteration in fatty acids is a potential biological mediator and biomarker for exposure-related health disorders.

  20. El fenómeno de envejecimiento de los asfaltos

    Directory of Open Access Journals (Sweden)

    Xiomara Vargas

    2010-09-01

    Full Text Available En este trabajo se presenta una revisión actualizada a los resultados del estudio de los procesos de envejecimiento de los asfaltos, encontrados por diversos investigadores, con el fin de profundizar en la comprensión de este fenómeno complejo. Los antecedentes demuestran la evolución del estudio del fenómeno de envejecimiento de los asfaltos, considerado inicialmente como un proceso de endurecimiento físico y progresivamente reconocido como un fenómeno complejo con repercusiones en la durabilidad y las propiedades fisicoquímicas del asfalto. Este documento pretende ser una guía para el emprendimiento de futuras investigaciones relacionadas con el desarrollo de nuevos asfaltos y mezclas asfálticas con propiedades mejoradas.

  1. The hydrological functioning of a constructed fen wetland watershed.

    Science.gov (United States)

    Ketcheson, Scott J; Price, Jonathan S; Sutton, Owen; Sutherland, George; Kessel, Eric; Petrone, Richard M

    2017-12-15

    Mine reclamation requires the reconstruction of entire landforms and drainage systems. The hydrological regime of reclaimed landscapes will be a manifestation of the processes operating within the individual landforms that comprise it. Hydrology is the most important process regulating wetland function and development, via strong controls on chemical and biotic processes. Accordingly, this research addresses the growing and immediate need to understand the hydrological processes that operate within reconstructed landscapes following resource extraction. In this study, the function of a constructed fen watershed (the Nikanotee Fen watershed) is evaluated for the first two years following construction (2013-2014) and is assessed and discussed within the context of the construction-level design. The system design was capable of sustaining wet conditions within the Nikanotee Fen during the snow-free period in 2013 and 2014, with persistent ponded water in some areas. Evapotranspiration dominated the water fluxes from the system. These losses were partially offset by groundwater discharge from the upland aquifer, which demonstrated strong hydrologic connectivity with the fen in spite of most construction materials having lower than targeted saturated hydraulic conductivities. However, the variable surface infiltration rates and thick placement of a soil-capping layer constrained recharge to the upland aquifer, which remained below designed water contents in much of the upland. These findings indicate that it is possible to engineer the landscape to accommodate the hydrological functions of a fen peatland following surface oil sands extraction. Future research priorities should include understanding the storage and release of water within coarse-grained reclaimed landforms as well as evaluating the relative importance of external water sources and internal water conservation mechanisms for the viability of fen ecosystems over the longer-term. Copyright © 2017 Elsevier B

  2. Fenómeno de Raynaud. Revisión

    OpenAIRE

    Jairo Alonso Rodríguez-Criollo; Daniel Jaramillo-Arroyave

    2014-01-01

    El fenómeno de Raynaud es una respuesta vascular exagerada al frio o al estrés que se manifiesta por cambios de coloración de la piel en diversas localizaciones, característicamente mostrando tres fases distintas que comprenden palidez, cianosis y rubor. La fisiopatología tiene varios componentes y puede tener varias etiologías, que comprenden vasoconstricción, agregación plaquetaria, trombosis y proliferación vascular. Dependiendo de la ausencia o la presencia de enfermedad de base, el fenóm...

  3. Phase transformations in interstitial Fe-N alloys

    Energy Technology Data Exchange (ETDEWEB)

    Liapina, T.

    2005-04-15

    Nitriding is a prominent thermochemical heat-treatment procedure leading to various types of surface property improvements of the treated iron and steel. Many questions regarding even very basic properties of these compound layers and the relevant nitride phases are still open. Some of these open questions related with the behaviour of iron nitrides and, in particular, of iron nitride compound layers occurring below the usual process temperatures are addressed to in this thesis, as relevant e.g. for the cooling procedure after nitriding. The most important iron nitrides occurring in iron-nitride compound layers are the {gamma}'- and {epsilon}-phases in the Fe-N system. It is shown that for relatively low nitrogen contents of epsilon-iron nitrides (around Fe{sub 3}N) the cooling rate upon going down from an elevated annealing temperature to room temperature has a significant effect on the lattice parameters. X-ray and neutron diffraction analysis revealed that the lattice parameter values observed after fast cooling are affected by the higher degree of nitrogen disorder at elevated temperature, thus changing the c/a ratio. New relations between the lattice parameters of {epsilon}-iron nitrides and the nitrogen content are suggested for different types of cooling. The investigation by TEM of the decomposition upon annealing (633 K, 673 K) of initially homogeneous {epsilon}-Fe{sub 3}N powders revealed that the {gamma}'-formation occurs in only a few powder particles in a grain-like form. Moreover, diffraction line-profile analysis revealed N transport occurring from particle to particle, leading to inhomogeneities of N content in the epsilon-phase. It was shown that {gamma}'-iron nitride formation can occur by backwards growth of the existing {gamma}'-sublayer at the cost of the {epsilon}-sublayer increasing N concentration in the {epsilon}-layer. Another process, which may additionally occur in the compound layer upon annealing, is diffusion of N

  4. Phenylpropanoid profiling reveals a class of hydroxycinnamoyl glucaric acid conjugates in Isatis tinctoria leaves.

    Science.gov (United States)

    Nguyen, Thi-Kieu-Oanh; Jamali, Arash; Grand, Eric; Morreel, Kris; Marcelo, Paulo; Gontier, Eric; Dauwe, Rebecca

    2017-12-01

    The brassicaceous herb, Isatis tinctoria, is an ancient medicinal plant whose rosette leaf extracts have anti-inflammatory and anti-allergic activity. Brassicaceae are known to accumulate a variety of phenylpropanoids in their rosette leaves acting as antioxidants and a UV-B shield, and these compounds often have pharmacological potential. Nevertheless, knowledge about the phenylpropanoid content of I. tinctoria leaves remains limited to the characterization of a number of flavonoids. In this research, we profiled the methanol extracts of I. tinctoria fresh leaf extracts by liquid chromatography - mass spectrometry (LC-MS) and focused on the phenylpropanoid derivatives. We report the structural characterization of 99 compounds including 18 flavonoids, 21 mono- or oligolignols, 2 benzenoids, and a wide spectrum of 58 hydroxycinnamic acid esters. Besides the sinapate esters of malate, glucose and gentiobiose, which are typical of brassicaceous plants, these conjugates comprised a large variety of glucaric acid esters that have not previously been reported in plants. Feeding with 13 C 6 -glucaric acid showed that glucaric acid is an acyl acceptor of an as yet unknown acyltransferase activity in I. tinctoria rosette leaves. The large amount of hydroxycinnamic acid derivatives changes radically our view of the woad metabolite profile and potentially contributes to the pharmacological activity of I. tinctoria leaf extracts. Copyright © 2017 Elsevier Ltd. All rights reserved.

  5. Fenólicos totais e capacidade antioxidante in vitro de polpas de frutos tropicais

    Directory of Open Access Journals (Sweden)

    Luanne Morais Vieira

    2011-09-01

    Full Text Available O consumo de frutos e suas polpas tem sido muito recomendado por seu valor nutricional, alto teor de fibras, vitamina C e carotenoides. Trabalhos recentes têm apontado esses alimentos como fontes de compostos fenólicos com ação antioxidante, portanto sequestradores de radicais livres, com ação protetora contra o surgimento e/ou desenvolvimento de processos degenerativos que conduzem a doenças crônicas não transmissíveis. Devido à crescente comercialização e consumo de polpas de frutas no Brasil, especialmente na cidade de Teresina-Piauí, este trabalho selecionou um grupo de polpas de frutos de elevado consumo local para avaliação do teor de fenólicos totais e da atividade antioxidante in vitro pelo método de captura de radicais livres: DPPH (radical 1,1-diphenil-2-picrilhydrazil e ABTS (radical 2,2'azinobis(3-ethylbenzthiazoline-6-sulfonic acid. Os frutos selecionados foram: Acerola (Malpighia emarginata DC., Bacuri (Platonia insignis Mart., Cajá (Spondias mombin L., Caju (Anacardium occidentale, Goiaba(Psidium guajava e Tamarindo (Tamarindus indica L.. Os teores de fenólicos totais encontrados nas polpascongeladas destes frutos exibiram quantidades relevantes de polifenóis, destacando-se a polpa de acerola com 835,25 ± 32,44 e 449,63 ± 10,24 mg /100g nos extratos aquosos e hidroalcoólicos, respectivamente, seguido pela polpa de caju com 201,61 ± 19,15 e 165,07 ± 4,10 mg /100g. As polpas de bacuri e tamarindo foram as que apresentaram os menores teores de fenólicos totais. Com relação à atividade antioxidante in vitro, os melhores resultados foram encontrados para os extratos aquosos e hidroalcoólicos das polpas de acerola, caju e goiaba. A capacidade antioxidante destas polpas (EC50 em µg/mL variou de 24,42 a 413,36 e de 1,74 a 259,18 para os extratos aquosos e hidroalcoólicos, respectivamente. Utilizando o radical ABTS, a atividade antioxidante para essas mesmas polpas de frutas apresentou valores TEAC que

  6. Integration of computational modeling with membrane transport studies reveals new insights into amino acid exchange transport mechanisms

    Science.gov (United States)

    Widdows, Kate L.; Panitchob, Nuttanont; Crocker, Ian P.; Please, Colin P.; Hanson, Mark A.; Sibley, Colin P.; Johnstone, Edward D.; Sengers, Bram G.; Lewis, Rohan M.; Glazier, Jocelyn D.

    2015-01-01

    Uptake of system L amino acid substrates into isolated placental plasma membrane vesicles in the absence of opposing side amino acid (zero-trans uptake) is incompatible with the concept of obligatory exchange, where influx of amino acid is coupled to efflux. We therefore hypothesized that system L amino acid exchange transporters are not fully obligatory and/or that amino acids are initially present inside the vesicles. To address this, we combined computational modeling with vesicle transport assays and transporter localization studies to investigate the mechanisms mediating [14C]l-serine (a system L substrate) transport into human placental microvillous plasma membrane (MVM) vesicles. The carrier model provided a quantitative framework to test the 2 hypotheses that l-serine transport occurs by either obligate exchange or nonobligate exchange coupled with facilitated transport (mixed transport model). The computational model could only account for experimental [14C]l-serine uptake data when the transporter was not exclusively in exchange mode, best described by the mixed transport model. MVM vesicle isolates contained endogenous amino acids allowing for potential contribution to zero-trans uptake. Both L-type amino acid transporter (LAT)1 and LAT2 subtypes of system L were distributed to MVM, with l-serine transport attributed to LAT2. These findings suggest that exchange transporters do not function exclusively as obligate exchangers.—Widdows, K. L., Panitchob, N., Crocker, I. P., Please, C. P., Hanson, M. A., Sibley, C. P., Johnstone, E. D., Sengers, B. G., Lewis, R. M., Glazier, J. D. Integration of computational modeling with membrane transport studies reveals new insights into amino acid exchange transport mechanisms. PMID:25761365

  7. Chemical Transport Knockout for Oxidized Vitamin C, Dehydroascorbic Acid, Reveals Its Functions in vivo

    Directory of Open Access Journals (Sweden)

    Hongbin Tu

    2017-09-01

    Full Text Available Despite its transport by glucose transporters (GLUTs in vitro, it is unknown whether dehydroascorbic acid (oxidized vitamin C, DHA has any in vivo function. To investigate, we created a chemical transport knockout model using the vitamin C analog 6-bromo-ascorbate. This analog is transported on sodium-dependent vitamin C transporters but its oxidized form, 6-bromo-dehydroascorbic acid, is not transported by GLUTs. Mice (gulo−/− unable to synthesize ascorbate (vitamin C were raised on 6-bromo-ascorbate. Despite normal survival, centrifugation of blood produced hemolysis secondary to near absence of red blood cell (RBC ascorbate/6-bromo-ascorbate. Key findings with clinical implications were that RBCs in vitro transported dehydroascorbic acid but not bromo-dehydroascorbic acid; RBC ascorbate in vivo was obtained only via DHA transport; ascorbate via DHA transport in vivo was necessary for RBC structural integrity; and internal RBC ascorbate was essential to maintain ascorbate plasma concentrations in vitro/in vivo.

  8. A chemical perspective on transcriptional fidelity dominant contributions of sugar integrity revealed by unlocked nucleic acids

    DEFF Research Database (Denmark)

    Xu, Liang; Plouffe, Steven W; Chong, Jenny

    2013-01-01

    Transcription unlocked: A synthetic chemical biology approach involving unlocked nucleic acids was used to dissect the contribution of sugar backbone integrity to the RNA Polymerase II (Pol II) transcription process. An unexpected dominant role for sugar-ring integrity in Pol II transcriptional...

  9. Lauric acid and myristic acid from Allium sativum inhibit the growth of Mycobacterium tuberculosis H37Ra: in silico analysis reveals possible binding to protein kinase B.

    Science.gov (United States)

    Muniyan, Rajiniraja; Gurunathan, Jayaraman

    2016-12-01

    The bulb of Allium sativum Linn (Alliaceae) has numerous medicinal values. Though the petroleum ether extract of the bulb has shown to exhibit antimycobacterial activity, the phytochemical(s) responsible for this inhibitory activity is not known. To characterize the bioactive compounds in the petroleum ether extract of Allium sativum (garlic) that inhibit the growth of Mycobacterium tuberculosis H37Ra. Bioactivity-guided fractionation was employed to isolate the bioactive compounds. Antimycobacterial activity was evaluated by well-diffusion method and microplate alamar blue assay (MABA). Infrared spectroscopy, mass spectrometry and nuclear magnetic resonance spectroscopy were used to characterize the bioactive compounds. Autodock was used to obtain information on molecular recognition, and molecular dynamics simulation was performed using GROMACS. The bioactive compounds that inhibited the growth of M. tuberculosis H37Ra were found to be lauric acid (LA) and myristic acid (MA). The minimal inhibitory concentration of LA and MA was found to be 22.2 and 66.7 μg/mL, respectively. In silico analysis revealed that these fatty acids could bind at the cleft between the N-terminal and C-terminal lobes of the cytosolic domain of serine/threonine protein kinase B (PknB). The inhibition activity was dependent on the alkyl chain length of the fatty acid, and the amino acid residues involved in binding to fatty acid was found to be conserved across the Pkn family of proteins. The study indicates the possibility of using fatty acid derivatives, involving Pkn family of proteins, to inhibit the signal transduction processes in M. tuberculosis.

  10. Lysosomal metabolomics reveals V-ATPase- and mTOR-dependent regulation of amino acid efflux from lysosomes.

    Science.gov (United States)

    Abu-Remaileh, Monther; Wyant, Gregory A; Kim, Choah; Laqtom, Nouf N; Abbasi, Maria; Chan, Sze Ham; Freinkman, Elizaveta; Sabatini, David M

    2017-11-10

    The lysosome degrades and recycles macromolecules, signals to the cytosol and nucleus, and is implicated in many diseases. Here, we describe a method for the rapid isolation of mammalian lysosomes and use it to quantitatively profile lysosomal metabolites under various cell states. Under nutrient-replete conditions, many lysosomal amino acids are in rapid exchange with those in the cytosol. Loss of lysosomal acidification through inhibition of the vacuolar H + -adenosine triphosphatase (V-ATPase) increased the luminal concentrations of most metabolites but had no effect on those of the majority of essential amino acids. Instead, nutrient starvation regulates the lysosomal concentrations of these amino acids, an effect we traced to regulation of the mechanistic target of rapamycin (mTOR) pathway. Inhibition of mTOR strongly reduced the lysosomal efflux of most essential amino acids, converting the lysosome into a cellular depot for them. These results reveal the dynamic nature of lysosomal metabolites and that V-ATPase- and mTOR-dependent mechanisms exist for controlling lysosomal amino acid efflux. Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

  11. Metabolic regulation of trisporic acid on Blakeslea trispora revealed by a GC-MS-based metabolomic approach.

    Directory of Open Access Journals (Sweden)

    Jie Sun

    Full Text Available The zygomycete Blakeslea trispora is used commercially as natural source of â-carotene. Trisporic acid (TA is secreted from the mycelium of B. trispora during mating between heterothallic strains and is considered as a mediator of the regulation of mating processes and an enhancer of carotene biosynthesis. Gas chromatography-mass spectrometry and multivariate analysis were employed to investigate TA-associated intracellular biochemical changes in B. trispora. By principal component analysis, the differential metabolites discriminating the control groups from the TA-treated groups were found, which were also confirmed by the subsequent hierarchical cluster analysis. The results indicate that TA is a global regulator and its main effects at the metabolic level are reflected on the content changes in several fatty acids, carbohydrates, and amino acids. The carbon metabolism and fatty acids synthesis are sensitive to TA addition. Glycerol, glutamine, and ã-aminobutyrate might play important roles in the regulation of TA. Complemented by two-dimensional electrophoresis, the results indicate that the actions of TA at the metabolic level involve multiple metabolic processes, such as glycolysis and the bypass of the classical tricarboxylic acid cycle. These results reveal that the metabolomics strategy is a powerful tool to gain insight into the mechanism of a microorganism's cellular response to signal inducers at the metabolic level.

  12. Determination of natural organic matter and iron binding capacity in fen samples

    Science.gov (United States)

    Kügler, Stefan; Cooper, Rebecca E.; Frieder Mohr, Jan; Wichard, Thomas; Küsel, Kirsten

    2017-04-01

    Natural organic matter (NOM) plays an important role in ecosystem processes such as soil carbon stabilization, nutrient availability and metal complexation. Iron-NOM-complexes, for example, are known to increase the solubility and, as a result, the bioavailability of iron in natural environments leading to several effects on the microbial community. Due to the various functions of NOM in natural environments, there is a high level of interest in the characterization of the molecular composition. The complexity of NOM presents a significant challenge in the elucidation of its composition. However, the development and utilization of high resolution mass spectrometry (HR-MS) as a tool to detect single compounds in complex samples has spearheaded the effort to elucidate the composition of NOM. Over the past years, the accuracy of ion cyclotron- or Orbitrap mass spectrometers has increased dramatically resulting in the possibility to obtain a mass differentiation of the large number of compounds in NOM. Together these tools provide significant and powerful insight into the molecular composition of NOM. In the current study, we aim to understand abiotic and biotic interactions between NOM and metals, such as iron, found in the Schlöppnerbrunnen fen (Fichtelgebirge, Germany) and how these interactions impact the microbial consortia. We characterized the dissolved organic matter (DOM) as well as basic chemical parameters in the iron-rich (up to 20 mg (g wt peat)-1), slightly acidic (pH 4.8) fen to gain more information about DOM-metal interactions. This minerotrophic peatland connected to the groundwater has received Fe(II) released from the surrounding soils in the Lehstenbach catchment. Absorption spectroscopy (AAS), differential pulse polarography (DPP) and high resolution electrospray ionization mass spectrometry (HR-ESI-Orbitrap-MS) was applied to characterize the molecular composition of DOM in the peat water extract (PWE). We identified typical patterns for DOM

  13. Identification of olivetolic acid cyclase from Cannabis sativa reveals a unique catalytic route to plant polyketides.

    Science.gov (United States)

    Gagne, Steve J; Stout, Jake M; Liu, Enwu; Boubakir, Zakia; Clark, Shawn M; Page, Jonathan E

    2012-07-31

    Δ(9)-Tetrahydrocannabinol (THC) and other cannabinoids are responsible for the psychoactive and medicinal properties of Cannabis sativa L. (marijuana). The first intermediate in the cannabinoid biosynthetic pathway is proposed to be olivetolic acid (OA), an alkylresorcinolic acid that forms the polyketide nucleus of the cannabinoids. OA has been postulated to be synthesized by a type III polyketide synthase (PKS) enzyme, but so far type III PKSs from cannabis have been shown to produce catalytic byproducts instead of OA. We analyzed the transcriptome of glandular trichomes from female cannabis flowers, which are the primary site of cannabinoid biosynthesis, and searched for polyketide cyclase-like enzymes that could assist in OA cyclization. Here, we show that a type III PKS (tetraketide synthase) from cannabis trichomes requires the presence of a polyketide cyclase enzyme, olivetolic acid cyclase (OAC), which catalyzes a C2-C7 intramolecular aldol condensation with carboxylate retention to form OA. OAC is a dimeric α+β barrel (DABB) protein that is structurally similar to polyketide cyclases from Streptomyces species. OAC transcript is present at high levels in glandular trichomes, an expression profile that parallels other cannabinoid pathway enzymes. Our identification of OAC both clarifies the cannabinoid pathway and demonstrates unexpected evolutionary parallels between polyketide biosynthesis in plants and bacteria. In addition, the widespread occurrence of DABB proteins in plants suggests that polyketide cyclases may play an overlooked role in generating plant chemical diversity.

  14. Contrasting species-environment relationships in communities of testate amoebae, bryophytes and vascular plants along the fen-bog gradient.

    Science.gov (United States)

    Lamentowicz, Mariusz; Lamentowicz, Lukasz; van der Knaap, Willem O; Gabka, Maciej; Mitchell, Edward A D

    2010-04-01

    We studied the vegetation, testate amoebae and abiotic variables (depth of the water table, pH, electrical conductivity, Ca and Mg concentrations of water extracted from mosses) along the bog to extremely rich fen gradient in sub-alpine peatlands of the Upper Engadine (Swiss Alps). Testate amoeba diversity was correlated to that of mosses but not of vascular plants. Diversity peaked in rich fen for testate amoebae and in extremely rich fen for mosses, while for testate amoebae and mosses it was lowest in bog but for vascular plants in extremely rich fen. Multiple factor and redundancy analyses (RDA) revealed a stronger correlation of testate amoebae than of vegetation to water table and hydrochemical variables and relatively strong correlation between testate amoeba and moss community data. In RDA, hydrochemical variables explained a higher proportion of the testate amoeba and moss data than water table depth. Abiotic variables explained a higher percentage of the species data for testate amoebae (30.3% or 19.5% for binary data) than for mosses (13.4%) and vascular plants (10%). These results show that (1) vascular plant, moss and testate amoeba communities respond differently to ecological gradients in peatlands and (2) testate amoebae are more strongly related than vascular plants to the abiotic factors at the mire surface. These differences are related to vertical trophic gradients and associated niche differentiation.

  15. A first principles calculations of structural, electronic, magnetic and dynamical properties of mononitrides FeN and CoN

    International Nuclear Information System (INIS)

    Soni, Himadri R.; Mankad, Venu; Gupta, Sanjeev K.; Jha, Prafulla K.

    2012-01-01

    Highlights: ► We present spin dependent bandstructure, structural and magnetic moment of FeN/CoN. ► The PDC, PHDOS, spin effect on phonons suggests ZB is preferred at ambient pressure. ► Spin calculation offers an opportunity to understand the role of spin on phonons. - Abstract: Using first principles density functional theoretical calculations, the present paper reports a systematic nonspin and spin polarized total energy calculations of the lattice dynamical and a number of other properties such as band structure, structural and magnetic moment of two mononitrides FeN and CoN. The phonon dispersion curves and phonon density of states in the case of FeN and CoN have been determined for the first time and discussed. The structural and dynamical calculations suggest that the zinc blende structure is preferred at ambient pressure for both compounds. The rocksalt FeN has a nonzero magnetic moment while for FeN in zinc blende phase, it is either zero or very small. The zinc blende phase for both compounds is nonmagnetic. The spin calculation offers an intensive opportunity to understand the role of spin on the phonon properties of two mononitrides. Majority of the modes are sensitive to the effect of spin due to the modification of lattice constant. In this work we reveal that spin modifies the interionic interactions and local structure and leads to a flexible lattice which can be used for the functional materials design.

  16. Omics approaches on fresh-cut lettuce reveal global molecular responses to sodium hypochlorite and peracetic acid treatment.

    Science.gov (United States)

    Daddiego, Loretta; Bianco, Linda; Capodicasa, Cristina; Carbone, Fabrizio; Dalmastri, Claudia; Daroda, Lorenza; Del Fiore, Antonella; De Rossi, Patrizia; Di Carli, Mariasole; Donini, Marcello; Lopez, Loredana; Mengoni, Alessio; Paganin, Patrizia; Perrotta, Gaetano; Bevivino, Annamaria

    2018-01-01

    Lettuce is a leafy vegetable that is extensively commercialized as a ready-to-eat product because of its widespread use in human nutrition as salad. It is well known that washing treatments can severely affect the quality and shelf-life of ready-to-eat vegetables. The study presented here evaluated the effect of two washing procedures on fresh-cut lettuce during storage. An omics approach was applied to reveal global changes at molecular level induced by peracetic acid washing in comparison with sodium hypochlorite treatment. Microbiological analyses were also performed to quantify total bacterial abundance and composition. The study revealed wide metabolic alterations induced by the two sanitizers. In particular, transcriptomic and proteomic analyses pointed out a number of transcripts and proteins differentially accumulated in response to peracetic acid washing, mainly occurring on the first day of storage. In parallel, different microbiota composition and significant reduction in total bacterial load following washing were also observed. The results provide useful information for the fresh-cut industry to select an appropriate washing procedure preserving fresh-like attributes as much as possible during storage of the end product. Molecular evidence indicated peracetic acid to be a valid alternative to sodium hypochlorite as sanitizer solution. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

  17. UV absorption reveals mycosporine-like amino acids (MAAs in Tatra mountain lake phytoplankton

    Directory of Open Access Journals (Sweden)

    Jerzy Dera

    2013-08-01

    Full Text Available Enhanced absorption of UV radiation, an effect characteristic of mycosporine-like amino acids (MAAs, is reported in samples of phytoplankton from six lakes in the Tatra Mountains National Park (Poland. It was demonstrated that the mass-specific UV absorption coefficients for the phytoplankton in these lakes increased with altitude above sea level. Based on a comparison with the phytoplankton of Alpine lakes, investigated earlier by other authors (cited in this paper, it may be inferred that the phytoplankton of Tatra mountain lakes produce MAAs, which protect plant cells from UV light, the intensity of which increases with altitude.

  18. Revealing the Molecular Structural Transformation of Hardwood and Softwood in Dilute Acid Flowthrough Pretreatment

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Libing; Pu, Yunqiao; Cort, John R.; Ragauskas, Arthur J.; Yang, Bin

    2016-12-05

    To better understand the intrinsic recalcitrance of lignocellulosic biomass, the main hurdle to its efficient deconstruction, the effects of dilute acid flowthrough pretreatment on the dissolution chemistry of hemicellulose, cellulose, and lignin for both hardwood (e.g. poplar wood) and softwood (e.g. lodgepole pine wood) were investigated at temperatures of 200 °C to 270 °C and a flow rate of 25 mL/minute with 0.05% (w/w) H2SO4. Results suggested that the softwood cellulose was more readily to be degraded into monomeric sugars than that of hardwood under same pretreatment conditions. However, while the hardwood lignin was completely removed into hydrolysate, ~30% of the softwood lignin remained as solid residues under identical conditions, which was plausibly caused by vigorous C5-active recondensation reactions (C-C5). Unique molecular structural features that pronounced the specific recalcitrance of hardwood and softwood to dilute acid pretreatment were identified for the first time in this study, providing important insights to establish the effective biomass pretreatment.

  19. In situ proteo-metabolomics reveals metabolite secretion by the acid mine drainage bio-indicator, Euglena mutabilis

    Science.gov (United States)

    Halter, David; Goulhen-Chollet, Florence; Gallien, Sébastien; Casiot, Corinne; Hamelin, Jérôme; Gilard, Françoise; Heintz, Dimitri; Schaeffer, Christine; Carapito, Christine; Van Dorsselaer, Alain; Tcherkez, Guillaume; Arsène-Ploetze, Florence; Bertin, Philippe N

    2012-01-01

    Euglena mutabilis is a photosynthetic protist found in acidic aquatic environments such as peat bogs, volcanic lakes and acid mine drainages (AMDs). Through its photosynthetic metabolism, this protist is supposed to have an important role in primary production in such oligotrophic ecosystems. Nevertheless, the exact contribution of E. mutabilis in organic matter synthesis remains unclear and no evidence of metabolite secretion by this protist has been established so far. Here we combined in situ proteo-metabolomic approaches to determine the nature of the metabolites accumulated by this protist or potentially secreted into an AMD. Our results revealed that the secreted metabolites are represented by a large number of amino acids, polyamine compounds, urea and some sugars but no fatty acids, suggesting a selective organic matter contribution in this ecosystem. Such a production may have a crucial impact on the bacterial community present on the study site, as it has been suggested previously that prokaryotes transport and recycle in situ most of the metabolites secreted by E. mutabilis. Consequently, this protist may have an indirect but important role in AMD ecosystems but also in other ecological niches often described as nitrogen-limited. PMID:22237547

  20. Structure of Vibrio cholerae ToxT reveals a mechanism for fatty acid regulation of virulence genes

    Energy Technology Data Exchange (ETDEWEB)

    Lowden, Michael J.; Skorupski, Karen; Pellegrini, Maria; Chiorazzo, Michael G.; Taylor, Ronald K.; Kull, F. Jon (Dartmouth)

    2010-03-04

    Cholera is an acute intestinal infection caused by the bacterium Vibrio cholerae. In order for V. cholerae to cause disease, it must produce two virulence factors, the toxin-coregulated pilus (TCP) and cholera toxin (CT), whose expression is controlled by a transcriptional cascade culminating with the expression of the AraC-family regulator, ToxT. We have solved the 1.9 {angstrom} resolution crystal structure of ToxT, which reveals folds in the N- and C-terminal domains that share a number of features in common with AraC, MarA, and Rob as well as the unexpected presence of a buried 16-carbon fatty acid, cis-palmitoleate. The finding that cis-palmitoleic acid reduces TCP and CT expression in V. cholerae and prevents ToxT from binding to DNA in vitro provides a direct link between the host environment of V. cholerae and regulation of virulence gene expression.

  1. Revealing the compact structure of lactic acid bacterial hetero-exopolysaccharides by SAXS and DLS

    DEFF Research Database (Denmark)

    Khan, Sanaullah; Birch, Johnny; Harris, Pernille

    2017-01-01

    solution structures of three lactic acid bacterial hetero-exopolysaccharides (HePS-1, HePS-2 and HePS-3). Values of radius of gyration RG, cross-sectional radius of gyration RXS, approximate length L and hydrodynamic diameter were not directly proportional to the molar mass and indicated the HePSs adopted...... Galf residues significantly influence the conformation. Ab initio scattering modeling of HePS-2 and HePS-3 gave excellent curve fittings with χ2 of 0.43 and 0.34 for best-fit models, respectively, compatible with coil-like conformation. The findings disclose solution behaviour of HePS relevant...

  2. Stable isotope tracer reveals that viviparous snakes transport amino acids to offspring during gestation.

    Science.gov (United States)

    Van Dyke, James U; Beaupre, Steven J

    2012-03-01

    Viviparity and placentation have evolved from oviparity over 100 times in squamate reptiles (lizards and snakes). The independent origins of placentation have resulted in a variety of placental morphologies in different taxa, ranging from simple apposition of fetal and maternal tissues to endotheliochorial implantation that is homoplasious with mammalian placentation. Because the eggs of oviparous squamates transport gases and water from the environment and calcium from the eggshell, the placentae of viviparous squamates are thought to have initially evolved to accomplish these functions from within the maternal oviduct. Species with complex placentae have also been shown to rely substantially, or even primarily, on placental transport of organic nutrients for embryonic nutrition. However, it is unclear whether species with only simple placentae are also capable of transporting organic nutrients to offspring. Among viviparous squamates, all of the snakes that have been studied thus far have been shown to have simple placentae. However, most studies of snake placentation are limited to a single lineage, the North American Natricinae. We tested the abilities of four species of viviparous snakes - Agkistrodon contortrix (Viperidae), Boa constrictor (Boidae), Nerodia sipedon (Colubridae: Natricinae) and Thamnophis sirtalis (Colubridae: Natricinae) - to transport diet-derived amino acids to offspring during gestation. We fed [(15)N]leucine to pregnant snakes, and compared offspring (15)N content with that of unlabeled controls. Labeled females allocated significantly more (15)N to offspring than did controls, but (15)N allocation did not differ among species. Our results indicate that viviparous snakes are capable of transporting diet-derived amino acids to their offspring during gestation, possibly via placentation.

  3. Mechanisms controlling Cu, Fe, Mn, and Co profiles in peat of the Filson Creek Fen, northeastern Minnesota

    Science.gov (United States)

    Walton-Day, K.; Filipek, L.H.; Papp, C.S.E.

    1990-01-01

    Filson Creek Fen, located in northeastern Minnesota, overlies a Cu-Ni sulfide deposit. A site in the fen was studied to evaluate the hydrogeochemical mechanisms governing the development of Fe, Mn, Co, and Cu profiles in the peat. At the study site, surface peat approximately 1 m thick is separated from the underlying mineralized bedrock by a 6-12 m thickness of lake and glaciofluvial sediments and till. Concentrations of Fe, Mn, Co, and Cu in peat and major elements in pore water delineate a shallow, relatively oxidized, Cu-rich zone overlying a deeper, reduced, Fe-, Mn-, and Co-rich zone within the peat. Sequential metal extractions from peat samples reveal that 40-55% of the Cu in the shallow zone is associated with organic material, whereas the remaining Cu is distributed between iron-oxide, sulfide, and residual fractions. Sixty to seventy percent of the Fe, Mn, and Co concentrated in the deeper zone occur in the residual phase. The metal profiles and associations probably result from non-steady-state input of metals and detritus into the fen during formation of the peat column. The enrichment of organic-associated Cu in the upper, oxidized zone represents a combination of Cu transported into the fen with detrital plant fragments and soluble Cu, derived from weathering of outcrop and subcrop of the mineral deposit, transported into the fen, and fixed onto organic matter in the peat. The variable stratigraphy of the peat indicates that weathering processes and surface vegetation have changed through time in the fen. The Fe, Mn, and Co maxima at the base of the peat are associated with a maximum in detrital matter content of the peat resulting from a transition between the underlying inorganic sedimentary environment to an organic sedimentary environment. The chemistry of sediments and ground water collected beneath the peat indicate that mobilization of metals from sulfide minerals in the buried mineral deposit or glacial deposits is minimal. Therefore, the

  4. Comparative Transcriptome Analysis Reveals the Influence of Abscisic Acid on the Metabolism of Pigments, Ascorbic Acid and Folic Acid during Strawberry Fruit Ripening.

    Directory of Open Access Journals (Sweden)

    Dongdong Li

    Full Text Available A comprehensive investigation of abscisic acid (ABA biosynthesis and its influence on other important phytochemicals is critical for understanding the versatile roles that ABA plays during strawberry fruit ripening. Using RNA-seq technology, we sampled strawberry fruit in response to ABA or nordihydroguaiaretic acid (NDGA; an ABA biosynthesis blocker treatment during ripening and assessed the expression changes of genes involved in the metabolism of pigments, ascorbic acid (AsA and folic acid in the receptacles. The transcriptome analysis identified a lot of genes differentially expressed in response to ABA or NDGA treatment. In particular, genes in the anthocyanin biosynthesis pathway were actively regulated by ABA, with the exception of the gene encoding cinnamate 4-hydroxylase. Chlorophyll degradation was accelerated by ABA mainly owing to the higher expression of gene encoding pheide a oxygenase. The decrease of β-carotene content was accelerated by ABA treatment and delayed by NDGA. A high negative correlation rate was found between ABA and β-carotene content, indicating the importance of the requirement for ABA synthesis during fruit ripening. In addition, evaluation on the folate biosynthetic pathway indicate that ABA might have minor function in this nutrient's biosynthesis process, however, it might be involved in its homeostasis. Surprisingly, though AsA content accumulated during fruit ripening, expressions of genes involved in its biosynthesis in the receptacles were significantly lower in ABA-treated fruits. This transcriptome analysis expands our understanding of ABA's role in phytochemical metabolism during strawberry fruit ripening and the regulatory mechanisms of ABA on these pathways were discussed. Our study provides a wealth of genetic information in the metabolism pathways and may be helpful for molecular manipulation in the future.

  5. Proteomic analysis revealed alterations of the Plasmodium falciparum metabolism following salicylhydroxamic acid exposure

    Directory of Open Access Journals (Sweden)

    Torrentino-Madamet M

    2011-09-01

    Full Text Available Marylin Torrentino-Madamet1, Lionel Almeras2, Christelle Travaillé1, Véronique Sinou1, Matthieu Pophillat3, Maya Belghazi4, Patrick Fourquet3, Yves Jammes5, Daniel Parzy11UMR-MD3, Université de la Méditerranée, Antenne IRBA de Marseille (IMTSSA, Le Pharo, 2Unité de Recherche en Biologie et Epidémiologie Parasitaires, Antenne IRBA de Marseille (IMTSSA, Le Pharo, 3Centre d'Immunologie de Marseille Luminy, Institut National de la Santé et de la Recherche Médicale, Centre National de la Recherche Scientifique, Université de la Méditerranée, 4Centre d'Analyse Protéomique de Marseille, Institut Fédératif de Recherche Jean Roche, Faculté de Médecine Nord, 5UMR-MD2, Physiologie et Physiopathologie en Conditions d'Oxygénations Extrêmes, Institut Fédératif de Recherche Jean Roche, Faculté de Médecine Nord, Marseille, FranceObjectives: Although human respiratory metabolism is characterized by the mitochondrial electron transport chain, some organisms present a “branched respiratory chain.” This branched pathway includes both a classical and an alternative respiratory chain. The latter involves an alternative oxidase. Though the Plasmodium falciparum alternative oxidase is not yet identified, a specific inhibitor of this enzyme, salicylhydroxamic acid (SHAM, showed a drug effect on P. falciparum respiratory function using oxygen consumption measurements. The present study aimed to highlight the metabolic pathways that are affected in P. falciparum following SHAM exposure.Design: A proteomic approach was used to analyze the P. falciparum proteome and determine the metabolic pathways altered following SHAM treatment. To evaluate the SHAM effect on parasite growth, the phenotypic alterations of P. falciparum after SHAM or/and hyperoxia exposure were observed.Results: After SHAM exposure, 26 proteins were significantly deregulated using a fluorescent two dimensional-differential gel electrophoresis. Among these deregulated proteins

  6. Responses of fen plant species to groundwater level and light intensity

    NARCIS (Netherlands)

    Kotowski, W; van Andel, J; van Diggelen, R; Hogendorf, J.

    Characteristic species of sedge-moss fen communities occur in constantly wet, nutrient-poor sites with a high penetration of light through the vegetation canopy. We studied the effects of water table depth and differences in light intensity on the performance of fen species. Three fen species (Carex

  7. Characterization of volatile compounds in Fen-Daqu - a traditional Chinese liquor fermentation starter

    NARCIS (Netherlands)

    Van-Diep, L.; Zheng, X.; Chen, J.Y.; Han, B.Z.

    2012-01-01

    Fen-Daqu is a saccharifying agent and fermentation starter for the production of Chinese liquor Fen (alcoholic spirit) and Fen traditional vinegar. The volatile compounds produced at seven incubation steps were analysed by HS-SPME-GC-MS. A total of 83 major volatile compounds were identified,

  8. Stand structure and vegetation dynamics of a subalpine treed fen in Rocky Mountain National Park, Colorado

    Energy Technology Data Exchange (ETDEWEB)

    Johnson, J.B. [Colorado State Univ., Fort Collins, CO (United States). Dept. of Biology

    1997-06-01

    The tree population size structure and relationship between tree diameter and age were examined in a subalpine fen and surrounding Picea-Abies forest in northern Colorado. The fen grades from a sedge fen, through an ecotone, to a treed fen (i.e. fen colonized by trees). Tree growth rate varies across the vegetational gradient, with the sedge fen having the slowest growth, and the upland forest having the fastest growth. Differences in growth rate are related to the average size of peat hummocks, with areas containing tall hummocks exhibiting the highest tree growth rates. Size structures display the characteristic reverse-J distribution generally indicative of stable populations, but forest vegetation is expanding into the open regions of the fen, and within the treed fen an increase in Abies lasiocarpa is occurring. These changes are primarily attributed to a positive feedback situation wherein the fen`s surface is built up by peat accumulation. Distinct hummocks form first on the open fen but then coalesce to form raised peat islands in the treed fen. This new substrate provides habitat with a comparatively low water table and allows the growth of mesophytic forest vegetation. A pathway for this vegetational development is proposed. 40 refs., 2 figs.

  9. Decomposition of Carex and Sphagnum litter in two mesotrophic fens differing in dominant plant species

    NARCIS (Netherlands)

    Scheffer, R.A.; Van Logtestijn, R. S P; Verhoeven, J. T A

    2001-01-01

    Peatlands can be classified into fens and bogs based on their hydrology. Development of fens to bogs is accompanied by the invasion of Sphagnum species. The purpose of this study was to determine how the decomposition process in fens is influenced by the transition from a vascular plant-dominated

  10. From groundwater abstraction to vegetative response in fen ecosystems

    DEFF Research Database (Denmark)

    Johansen, Ole Munch; Jensen, Jacob Birk; Pedersen, Morten Lauge

    2014-01-01

    Hydrological effects of groundwater abstraction near a Danish river valley have been assessed by integrated hydrological modelling. The study site contains groundwater-dependent terrestrial ecosystems in terms of fen and spring habitats that are highly dependent on regional and local scale...... hydrology. Fens are rare and threatened worldwide due to pressures from agriculture, to lack of appropriate management and to altered catchment hydrology. A solid foundation for hydrological modelling was established based on intensive monitoring at the site, combined with full-scale pumping tests...... in the area. A regional groundwater model was used to describe the dynamics in groundwater recharge and the large-scale discharge to streams. A local grid refinement approach was then applied in a detailed assessment of damage in order to balance the computational effort and the need for a high spatial...

  11. Transcriptomic analysis reveals the metabolic mechanism of L-ascorbic acid in Ziziphus jujuba Mill.

    Directory of Open Access Journals (Sweden)

    Chunmei eZhang

    2016-02-01

    Full Text Available Chinese jujube (Ziziphus jujuba Mill. is the most economically important member of the Rhamnaceae family and contains a high concentration of ascorbic acid (AsA. To explore the metabolic mechanism of AsA accumulation, we investigated the abundance of AsA in the fruit development stages, the leaf and flower of Z. jujuba cv Junzao, and the mature fruit of one type of wild jujube (Z. jujuba var. spinosa Hu, Yanchuan sour jujube. And the expression patterns of genes involved in AsA biosynthesis, degradation and recycling were analyzed. The result showed that AsA biosynthesis during early fruit development (the enlargement stage is the main reason for jujube high accumulation. The L-galactose pathway plays a predominant role in the biosynthesis of AsA during jujube fruit development, and the genes GMP1, GME1, GGP, and GaLDH involved in the determination of AsA concentration during fruit development and in different genotypes; the myo-inositol pathway along with the genes GME2 and GMP2 in the L-galactose pathway play a compensatory role in maintaining AsA accumulation during the ripening stage. These findings enhance our understanding of the molecular mechanism in regulating AsA accumulation for jujube.

  12. El fenómeno de bullying en Colombia

    Directory of Open Access Journals (Sweden)

    Ángela Paola Contreras Álvarez

    2013-01-01

    Full Text Available El presente artículo describe el nefasto fenómeno de violencia y hostigamiento en ambientes escolares denominado bullying o matoneo escolar, el cual, aunque ha sido analizado desde finales de los años setenta en los países escandinavos, tuvo auge en Colombia en el año 2000, adquiriendo fuerza y permanencia con el uso de redes sociales, evidenciando la falta de políticas nacionales educativas para la atención e intervención del problema, al igual que el olvido de educación en derechos humanos y resolución pacífica de conflictos en los colegios. Esta problemática se desarrolla a través del significado del bullying, la descripción de sus antecedentes, descripción general del fenómeno, relación de los deberes del Estado frente al tema, la concepción del fenómeno desde la perspectiva de la Corte Constitucional, concluyendo en algunas sugerencias para abordar la problemática escolar.

  13. Conditional RARα Knockout Mice Reveal Acute Requirement for Retinoic Acid and RARα in Homeostatic Plasticity

    Directory of Open Access Journals (Sweden)

    Federica eSarti

    2012-02-01

    Full Text Available All-trans retinoic acid (RA plays important roles in brain development through regulating gene transcription. Recently, a novel postdevelopmental role of RA in mature brain was proposed. Specifically, RA rapidly enhanced excitatory synaptic transmission independent of transcriptional regulation. RA synthesis was induced when excitatory synaptic transmission was chronically blocked, and RA then activated dendritic protein synthesis and synaptic insertion of homomeric GluA1 AMPA receptors, thereby compensating for the loss of neuronal activity in a homeostatic fashion. This action of RA was suggested to be mediated by its canonical receptor RARα but no genetic evidence was available. Thus, we here tested the fundamental requirement of RARα in homeostatic plasticity using conditional RARα knockout mice, and additionally performed a structure-function analysis of RARα. We show that acutely deleting RARα in neurons eliminated RA’s effect on excitatory synaptic transmission, and inhibited activity blockade-induced homeostatic synaptic plasticity. By expressing various RARα rescue constructs in RARα knockout neurons, we found that the DNA-binding domain of RARα was dispensable for its role in regulating synaptic strength, further supporting the notion that RA and RARα act in a non-transcriptional manner in this context. By contrast, the ligand-binding domain (LBD and the mRNA-binding domain (F-domain are both necessary and sufficient for the function of RARα in homeostatic plasticity. Furthermore, we found that homeostatic regulation performed by the LBD/F domains leads to insertion of calcium-permeable AMPA receptors. Our results confirm with unequivocal genetic approaches that RA and RARα perform essential non-transcriptional functions in regulating synaptic strength, and establish a functional link between the various domains of RARα and their involvement in regulating protein synthesis and excitatory synaptic transmission during

  14. Plasticity of photoreceptor-generating retinal progenitors revealed by prolonged retinoic acid exposure

    Directory of Open Access Journals (Sweden)

    Cameron David A

    2011-08-01

    Full Text Available Abstract Background Retinoic acid (RA is important for vertebrate eye morphogenesis and is a regulator of photoreceptor development in the retina. In the zebrafish, RA treatment of postmitotic photoreceptor precursors has been shown to promote the differentiation of rods and red-sensitive cones while inhibiting the differentiation of blue- and UV-sensitive cones. The roles played by RA and its receptors in modifying photoreceptor fate remain to be determined. Results Treatment of zebrafish embryos with RA, beginning at the time of retinal progenitor cell proliferation and prior to photoreceptor terminal mitosis, resulted in a significant alteration of rod and cone mosaic patterns, suggesting an increase in the production of rods at the expense of red cones. Quantitative pattern analyses documented increased density of rod photoreceptors and reduced local spacing between rod cells, suggesting rods were appearing in locations normally occupied by cone photoreceptors. Cone densities were correspondingly reduced and cone photoreceptor mosaics displayed expanded and less regular spacing. These results were consistent with replacement of approximately 25% of positions normally occupied by red-sensitive cones, with additional rods. Analysis of embryos from a RA-signaling reporter line determined that multiple retinal cell types, including mitotic cells and differentiating rods and cones, are capable of directly responding to RA. The RA receptors RXRγ and RARαb are expressed in patterns consistent with mediating the effects of RA on photoreceptors. Selective knockdown of RARαb expression resulted in a reduction in endogenous RA signaling in the retina. Knockdown of RARαb also caused a reduced production of rods that was not restored by simultaneous treatments with RA. Conclusions These data suggest that developing retinal cells have a dynamic sensitivity to RA during retinal neurogenesis. In zebrafish RA may influence the rod vs. cone cell fate

  15. Sulfur and carbon isotope biogeochemistry of a rewetted brackish fen

    Science.gov (United States)

    Koebsch, Franziska; Gehre, Matthias; Winkel, Matthias; Koehler, Stefan; Koch, Marian; Jurasinski, Gerald; Spitzy, Alejandro; Liebner, Susanne; Sachs, Torsten; Schmiedinger, Iris; Kretzschmann, Lisett; Saborowski, Anke; Böttcher, Michael E.

    2015-04-01

    Coastal wetlands are at the interface between terrestrial freshwater and marine and exhibit very specific biogeochemical conditions. Intermittent sea water intrusion affects metabolic pathways, i. e. anaerobic carbon metabolism is progressively dominated by sulfate reduction with lower contribution of methanogenesis whilst methane production is increasingly shifted from acetoclastic to hydrogenotrophic. Due to expanding anthropogenic impact a large proportion of coastal ecosystems is degraded with severe implications for the biogeochemical processes. We use concentration patterns and stable isotope signatures of water, sulfate, dissolved carbonate, and methane (δ2H, δ13C, δ18O, δ34S) to investigate the S and C metabolic cycle in a rewetted fen close to the southern Baltic Sea border. Such studies are crucial to better predict dynamic ecosystem feedback to global change like organic matter (OM) decomposition or greenhouse gas emissions. Yet, little is known about the metabolic pathways in such environments. The study site is part of the TERENO Observatory "Northeastern German Lowlands' and measurements of methane emissions have run since 2009. High methane fluxes up to 800 mg m-2 hr-1 indicate that methanogenesis is the dominant C metabolism pathway despite of high sulfate concentrations (up to 37 mM). The presented data are part of a comprehensive biogeochemical investigation that we conducted in autumn 2014 and that comprises 4 pore water profiles and sediment samples within a transect of 300-1500 m distance to the Baltic Sea. Depth of organic layers ranged from 25 to 140 cm with high OM contents (up to 90 dwt.%). Sulfate/chloride ratios in the pore waters were lower than in the Baltic Sea for most sites and sediment depths indicated a substantial net sulfate loss. Sulfide concentrations were negligible at the top and increased parallel to the sulfate concentrations with depth to values of up to 0.3 mM. One pore water profiles situated 1150 m from the Baltic

  16. Metabonomics reveals drastic changes in anti-inflammatory/pro-resolving polyunsaturated fatty acids-derived lipid mediators in leprosy disease.

    Directory of Open Access Journals (Sweden)

    Julio J Amaral

    Full Text Available Despite considerable efforts over the last decades, our understanding of leprosy pathogenesis remains limited. The complex interplay between pathogens and hosts has profound effects on host metabolism. To explore the metabolic perturbations associated with leprosy, we analyzed the serum metabolome of leprosy patients. Samples collected from lepromatous and tuberculoid patients before and immediately after the conclusion of multidrug therapy (MDT were subjected to high-throughput metabolic profiling. Our results show marked metabolic alterations during leprosy that subside at the conclusion of MDT. Pathways showing the highest modulation were related to polyunsaturated fatty acid (PUFA metabolism, with emphasis on anti-inflammatory, pro-resolving omega-3 fatty acids. These results were confirmed by eicosanoid measurements through enzyme-linked immunoassays. Corroborating the repertoire of metabolites altered in sera, metabonomic analysis of skin specimens revealed alterations in the levels of lipids derived from lipase activity, including PUFAs, suggesting a high lipid turnover in highly-infected lesions. Our data suggest that omega-6 and omega-3, PUFA-derived, pro-resolving lipid mediators contribute to reduced tissue damage irrespectively of pathogen burden during leprosy disease. Our results demonstrate the utility of a comprehensive metabonomic approach for identifying potential contributors to disease pathology that may facilitate the development of more targeted treatments for leprosy and other inflammatory diseases.

  17. Activation of acid-sensing ion channels by localized proton transient reveals their role in proton signaling.

    Science.gov (United States)

    Zeng, Wei-Zheng; Liu, Di-Shi; Liu, Lu; She, Liang; Wu, Long-Jun; Xu, Tian-Le

    2015-09-15

    Extracellular transients of pH alterations likely mediate signal transduction in the nervous system. Neuronal acid-sensing ion channels (ASICs) act as sensors for extracellular protons, but the mechanism underlying ASIC activation remains largely unknown. Here, we show that, following activation of a light-activated proton pump, Archaerhodopsin-3 (Arch), proton transients induced ASIC currents in both neurons and HEK293T cells co-expressing ASIC1a channels. Using chimera proteins that bridge Arch and ASIC1a by a glycine/serine linker, we found that successful coupling occurred within 15 nm distance. Furthermore, two-cell sniffer patch recording revealed that regulated release of protons through either Arch or voltage-gated proton channel Hv1 activated neighbouring cells expressing ASIC1a channels. Finally, computational modelling predicted the peak proton concentration at the intercellular interface to be at pH 6.7, which is acidic enough to activate ASICs in vivo. Our results highlight the pathophysiological role of proton signalling in the nervous system.

  18. Carbon and nitrogen isotopes from top predator amino acids reveal rapidly shifting ocean biochemistry in the outer California Current.

    Directory of Open Access Journals (Sweden)

    Rocio I Ruiz-Cooley

    Full Text Available Climatic variation alters biochemical and ecological processes, but it is difficult both to quantify the magnitude of such changes, and to differentiate long-term shifts from inter-annual variability. Here, we simultaneously quantify decade-scale isotopic variability at the lowest and highest trophic positions in the offshore California Current System (CCS by measuring δ15N and δ13C values of amino acids in a top predator, the sperm whale (Physeter macrocephalus. Using a time series of skin tissue samples as a biological archive, isotopic records from individual amino acids (AAs can reveal the proximate factors driving a temporal decline we observed in bulk isotope values (a decline of ≥1 ‰ by decoupling changes in primary producer isotope values from those linked to the trophic position of this toothed whale. A continuous decline in baseline (i.e., primary producer δ15N and δ13C values was observed from 1993 to 2005 (a decrease of ∼4‰ for δ15N source-AAs and 3‰ for δ13C essential-AAs, while the trophic position of whales was variable over time and it did not exhibit directional trends. The baseline δ15N and δ13C shifts suggest rapid ongoing changes in the carbon and nitrogen biogeochemical cycling in the offshore CCS, potentially occurring at faster rates than long-term shifts observed elsewhere in the Pacific. While the mechanisms forcing these biogeochemical shifts remain to be determined, our data suggest possible links to natural climate variability, and also corresponding shifts in surface nutrient availability. Our study demonstrates that isotopic analysis of individual amino acids from a top marine mammal predator can be a powerful new approach to reconstructing temporal variation in both biochemical cycling and trophic structure.

  19. Carbon and nitrogen isotopes from top predator amino acids reveal rapidly shifting ocean biochemistry in the outer California Current.

    Science.gov (United States)

    Ruiz-Cooley, Rocio I; Koch, Paul L; Fiedler, Paul C; McCarthy, Matthew D

    2014-01-01

    Climatic variation alters biochemical and ecological processes, but it is difficult both to quantify the magnitude of such changes, and to differentiate long-term shifts from inter-annual variability. Here, we simultaneously quantify decade-scale isotopic variability at the lowest and highest trophic positions in the offshore California Current System (CCS) by measuring δ15N and δ13C values of amino acids in a top predator, the sperm whale (Physeter macrocephalus). Using a time series of skin tissue samples as a biological archive, isotopic records from individual amino acids (AAs) can reveal the proximate factors driving a temporal decline we observed in bulk isotope values (a decline of ≥1 ‰) by decoupling changes in primary producer isotope values from those linked to the trophic position of this toothed whale. A continuous decline in baseline (i.e., primary producer) δ15N and δ13C values was observed from 1993 to 2005 (a decrease of ∼4‰ for δ15N source-AAs and 3‰ for δ13C essential-AAs), while the trophic position of whales was variable over time and it did not exhibit directional trends. The baseline δ15N and δ13C shifts suggest rapid ongoing changes in the carbon and nitrogen biogeochemical cycling in the offshore CCS, potentially occurring at faster rates than long-term shifts observed elsewhere in the Pacific. While the mechanisms forcing these biogeochemical shifts remain to be determined, our data suggest possible links to natural climate variability, and also corresponding shifts in surface nutrient availability. Our study demonstrates that isotopic analysis of individual amino acids from a top marine mammal predator can be a powerful new approach to reconstructing temporal variation in both biochemical cycling and trophic structure.

  20. Fenómenos de transporte : un curso introductorio

    OpenAIRE

    Betancourt Grajales, Ramiro

    1991-01-01

    Fenómenos de transporte, es el nombre colectivo que se da al estudio sistemático e integrado de tres áreas clásicas de la ciencia de la Ingeniería : 1) Transporte de Energía o Calor, 2) Transporte de Masa o Difusión, y 3) Transporte de Cantidad de Movimiento o Impulso (Momentum en Inglés), o Dinámica de Fluidos. Debido a que con frecuencia el transporte de masa y de calor ocurren en un fluido, algunos planes de estudio incluyen estos procesos en su tratamiento de la mecánica de fluidos....

  1. Homologous regions of Fen1 and p21Cip1 compete for binding to the same site on PCNA: a potential mechanism to co-ordinate DNA replication and repair.

    Science.gov (United States)

    Warbrick, E; Lane, D P; Glover, D M; Cox, L S

    1997-05-15

    Following genomic damage, the cessation of DNA replication is co-ordinated with onset of DNA repair; this co-ordination is essential to avoid mutation and genomic instability. To investigate these phenomena, we have analysed proteins that interact with PCNA, which is required for both DNA replication and repair. One such protein is p21Cip1, which inhibits DNA replication through its interaction with PCNA, while allowing repair to continue. We have identified an interaction between PCNA and the structure specific nuclease, Fen1, which is involved in DNA replication. Deletion analysis suggests that p21Cip1 and Fen1 bind to the same region of PCNA. Within Fen1 and its homologues a small region (10 amino acids) is sufficient for PCNA binding, which contains an 8 amino acid conserved PCNA-binding motif. This motif shares critical residues with the PCNA-binding region of p21Cip1. A PCNA binding peptide from p21Cip1 competes with Fen1 peptides for binding to PCNA, disrupts the Fen1-PCNA complex in replicating cell extracts, and concomitantly inhibits DNA synthesis. Competition between homologous regions of Fen1 and p21Cip1 for binding to the same site on PCNA may provide a mechanism to co-ordinate the functions of PCNA in DNA replication and repair.

  2. Understanding the Groundwater Hydrology of a Geographically-Isolated Prairie Fen: Implications for Conservation.

    Science.gov (United States)

    Sampath, Prasanna Venkatesh; Liao, Hua-Sheng; Curtis, Zachary Kristopher; Doran, Patrick J; Herbert, Matthew E; May, Christopher A; Li, Shu-Guang

    2015-01-01

    The sources of water and corresponding delivery mechanisms to groundwater-fed fens are not well understood due to the multi-scale geo-morphologic variability of the glacial landscape in which they occur. This lack of understanding limits the ability to effectively conserve these systems and the ecosystem services they provide, including biodiversity and water provisioning. While fens tend to occur in clusters around regional groundwater mounds, Ives Road Fen in southern Michigan is an example of a geographically-isolated fen. In this paper, we apply a multi-scale groundwater modeling approach to understand the groundwater sources for Ives Road fen. We apply Transition Probability geo-statistics on more than 3000 well logs from a state-wide water well database to characterize the complex geology using conditional simulations. We subsequently implement a 3-dimensional reverse particle tracking to delineate groundwater contribution areas to the fen. The fen receives water from multiple sources: local recharge, regional recharge from an extensive till plain, a regional groundwater mound, and a nearby pond. The regional sources deliver water through a tortuous, 3-dimensional "pipeline" consisting of a confined aquifer lying beneath an extensive clay layer. Water in this pipeline reaches the fen by upwelling through openings in the clay layer. The pipeline connects the geographically-isolated fen to the same regional mound that provides water to other fen clusters in southern Michigan. The major implication of these findings is that fen conservation efforts must be expanded from focusing on individual fens and their immediate surroundings, to studying the much larger and inter-connected hydrologic network that sustains multiple fens.

  3. Fe-N co-doped SiO2@TiO2 yolk-shell hollow nanospheres with enhanced visible light photocatalytic degradation

    Science.gov (United States)

    Wan, Hengcheng; Yao, Weitang; Zhu, Wenkun; Tang, Yi; Ge, Huilin; Shi, Xiaozhong; Duan, Tao

    2018-06-01

    SiO2@TiO2 yolk@shell hollow nanospheres (STNSs) is considered as an outstanding photocatalyst due to its tunable structure and composition. Based on this point, we present an unprecedentedly excellent photocatalytic property of STNSs toward tannic acid via a Fe-N co-doped strategy. Their morphologies, compositions, structure and properties are characterized. The Fe-N co-doped STNSs formed good hollow yolk@shell structure. The results show that the energy gap of the composites can be downgraded to 2.82 eV (pure TiO2 = 3.2 eV). Photocatalytic degradation of tannic acid (TA, 30 mg L-1) under visible light (380 nm TiO2 nanospheres, non-doped STNSs and N-doped STNSs, the Fe-N co-doped STNSs exhibits the highest activity, which can degrade 99.5% TA into CO2 and H2O in 80 min. The probable degradation mechanism of the composites is simultaneously proposed, the band gap of STNSs becomes narrow by co-doping Fe-N, so that the TiO2 shell can stimulate electrons under visible light exposure, generate the ions of radOH and radO2- with a strong oxidizing property. Therefore this approach works is much desired for radioactive organic wastewater photocatalytic degradation.

  4. Fenótipos clínicos de asma grave Clinical phenotypes of severe asthma

    Directory of Open Access Journals (Sweden)

    Roseliane de Souza Araújo Alves

    2008-09-01

    Full Text Available OBJETIVO: Estabelecer os fenótipos clínicos em portadores de asma grave. MÉTODOS: Foram estudados, retrospectivamente, 111 pacientes em um ambulatório especializado. Os pacientes foram avaliados e acompanhados de maneira sistemática, estabelecendo-se ao final do acompanhamento a adesão e o controle ou não da doença por dados clínicos e funcionais. A resistência ao tratamento foi definida como o não preenchimento, ao final do acompanhamento, por pelo menos seis meses, dos critérios de controle de asma, apesar do uso correto e adesão à medicação. Os fenótipos foram determinados por análise fatorial e comparados por testes diversos. RESULTADOS: Ao final, 88 pacientes foram considerados aderentes e 23 não aderentes. Por análise fatorial do grupo aderente, quatro fenótipos foram determinados: o fenótipo 1 (28 pacientes, formado pelos pacientes resistentes ao tratamento, com maior freqüência de sintomas noturnos, maior número de exacerbações e uso mais freqüente de broncodilatador de resgate; o fenótipo 2 (48 pacientes, formado pelos pacientes com obstrução persistente, com menores valores de relação volume expiratório forçado no primeiro segundo/capacidade vital forçada na avaliação inicial, idade mais avançada e maior tempo de doença; o fenótipo 3 (42 pacientes, representa os pacientes com rinossinusite alérgica, sendo constituído de não fumantes com obstrução predominantemente reversível; e o fenótipo 4 (15 pacientes, formado por casos com história de intolerância à aspirina associado à asma quase fatal. CONCLUSÕES: Um número significativo de portadores de ama grave não adere ao tratamento. Muitos pacientes com asma grave têm obstrução irreversível, mas o fenótipo clínico mais relevante é constituído pelos pacientes resistentes ao tratamento habitual.OBJECTIVE: To characterize clinical phenotypes of severe asthma. METHODS: A total of 111 patients were retrospectively evaluated at a

  5. Understanding toxicity at the watershed scale : design of the Syncrude Sandhill Fen watershed research project

    International Nuclear Information System (INIS)

    Wytrykush, C.

    2010-01-01

    Fens are peat-accumulating wetlands with a water table consisting of mineral-rich ground or surface water. This study discussed the construction of a fen-type reclaimed wetland constructed in a post-mining oil sands landscape. Syncrude Canada's Sandhill fen watershed project represents the first attempt at constructing a fen wetland in the oil sands region. The wetland and its watershed will be constructed on a soft tailings deposit. The design basis for the fen and watershed was developed by a team of researchers and scientists. The aim of the fen design was to control the salinity caused by tailings consolidation and seepage over time. Methods of mitigating potentially toxic effects from salinity were discussed.

  6. RNA Sequencing and Coexpression Analysis Reveal Key Genes Involved in α-Linolenic Acid Biosynthesis in Perilla frutescens Seed

    Directory of Open Access Journals (Sweden)

    Tianyuan Zhang

    2017-11-01

    Full Text Available Perilla frutescen is used as traditional food and medicine in East Asia. Its seeds contain high levels of α-linolenic acid (ALA, which is important for health, but is scarce in our daily meals. Previous reports on RNA-seq of perilla seed had identified fatty acid (FA and triacylglycerol (TAG synthesis genes, but the underlying mechanism of ALA biosynthesis and its regulation still need to be further explored. So we conducted Illumina RNA-sequencing in seven temporal developmental stages of perilla seeds. Sequencing generated a total of 127 million clean reads, containing 15.88 Gb of valid data. The de novo assembly of sequence reads yielded 64,156 unigenes with an average length of 777 bp. A total of 39,760 unigenes were annotated and 11,693 unigenes were found to be differentially expressed in all samples. According to Kyoto Encyclopedia of Genes and Genomes (KEGG pathway analysis, 486 unigenes were annotated in the “lipid metabolism” pathway. Of these, 150 unigenes were found to be involved in fatty acid (FA biosynthesis and triacylglycerol (TAG assembly in perilla seeds. A coexpression analysis showed that a total of 104 genes were highly coexpressed (r > 0.95. The coexpression network could be divided into two main subnetworks showing over expression in the medium or earlier and late phases, respectively. In order to identify the putative regulatory genes, a transcription factor (TF analysis was performed. This led to the identification of 45 gene families, mainly including the AP2-EREBP, bHLH, MYB, and NAC families, etc. After coexpression analysis of TFs with highly expression of FAD2 and FAD3 genes, 162 TFs were found to be significantly associated with two FAD genes (r > 0.95. Those TFs were predicted to be the key regulatory factors in ALA biosynthesis in perilla seed. The qRT-PCR analysis also verified the relevance of expression pattern between two FAD genes and partial candidate TFs. Although it has been reported that some TFs

  7. In Vivo Screening Using Transgenic Zebrafish Embryos Reveals New Effects of HDAC Inhibitors Trichostatin A and Valproic Acid on Organogenesis.

    Directory of Open Access Journals (Sweden)

    Ling Li

    Full Text Available The effects of endocrine disrupting chemicals (EDCs on reproduction are well known, whereas their developmental effects are much less characterized. However, exposure to endocrine disruptors during organogenesis may lead to deleterious and permanent problems later in life. Zebrafish (Danio rerio transgenic lines expressing the green fluorescent protein (GFP in specific organs and tissues are powerful tools to uncover developmental defects elicited by EDCs. Here, we used seven transgenic lines to visualize in vivo whether a series of EDCs and other pharmaceutical compounds can alter organogenesis in zebrafish. We used transgenic lines expressing GFP in pancreas, liver, blood vessels, inner ear, nervous system, pharyngeal tooth and pectoral fins. This screen revealed that four of the tested chemicals have detectable effects on different organs, which shows that the range of effects elicited by EDCs is wider than anticipated. The endocrine disruptor tetrabromobisphenol-A (TBBPA, as well as the three drugs diclofenac, trichostatin A (TSA and valproic acid (VPA induced abnormalities in the embryonic vascular system of zebrafish. Moreover, TSA and VPA induced specific alterations during the development of pancreas, an observation that was confirmed by in situ hybridization with specific markers. Developmental delays were also induced by TSA and VPA in the liver and in pharyngeal teeth, resulting in smaller organ size. Our results show that EDCs can induce a large range of developmental alterations during embryogenesis of zebrafish and establish GFP transgenic lines as powerful tools to screen for EDCs effects in vivo.

  8. N and P addition inhibits growth of rich fen bryophytes

    DEFF Research Database (Denmark)

    Andersen, Dagmar Kappel; Ejrnæs, Rasmus; Riis, Tenna

    2016-01-01

    vernicosus and paludella squarrosa) rich fen bryophytes were grown in mixed culture and subjected to rainwater or groundwater and three levels of N (0, 1 and 3 mg N L-1) and P (0, 0.05 and 0.1 mg P NL-1). All species responded negatively to higher N-levels and three of four species responded negatively...... to rainwater and higher P-levels. C. cuspidata had highest relative growth rate in all treatments, and the infrequently occurringrare species had lower relative growth rate and were more negatively affected by high levels of N than the frequently occurringcommon species. A negative effect of rainwater seemed...... to be caused by higher background levels of N in rainwater compared to groundwater rather than a pH-effect per se. We found a negative effect of high initial bryophyte density in three of four species indicating density dependent inhibition between species.We suggest that maintenance of oligotrophic conditions...

  9. Investigating on the fermentation behavior of six lactic acid bacteria strains in barley malt wort reveals limitation in key amino acids and buffer capacity.

    Science.gov (United States)

    Nsogning, Sorelle Dongmo; Fischer, Susann; Becker, Thomas

    2018-08-01

    Understanding lactic acid bacteria (LAB) fermentation behavior in malt wort is a milestone towards flavor improvement of lactic acid fermented malt beverages. Therefore, this study aims to outline deficiencies that may exist in malt wort fermentation. First, based on six LAB strains, cell viability and vitality were evaluated. Second, sugars, organic acids, amino acids, pH value and buffering capacity (BC) were monitored. Finally, the implication of key amino acids, fructose and wort BC on LAB growth was determined. Short growth phase coupled with prompt cell death and a decrease in metabolic activity was observed. Low wort BC caused rapid pH drop with lactic acid accumulation, which conversely increased the BC leading to less pH change at late-stage fermentation. Lactic acid content (≤3.9 g/L) was higher than the reported inhibitory concentration (1.8 g/L). Furthermore, sugars were still available but fructose and key amino acids lysine, arginine and glutamic acid were considerably exhausted (≤98%). Wort supplementations improved cell growth and viability leading to conclude that key amino acid depletion coupled with low BC limits LAB growth in malt wort. Then, a further increase in organic acid reduces LAB viability. This knowledge opens doors for LAB fermentation process optimization in malt wort. Copyright © 2018 Elsevier Ltd. All rights reserved.

  10. Expression Profiling during Arabidopsis/Downy Mildew Interaction Reveals a Highly-Expressed Effector That Attenuates Responses to Salicylic Acid

    Science.gov (United States)

    Asai, Shuta; Caillaud, Marie-Cécile; Furzer, Oliver J.; Ishaque, Naveed; Wirthmueller, Lennart; Fabro, Georgina; Shirasu, Ken; Jones, Jonathan D. G.

    2014-01-01

    Plants have evolved strong innate immunity mechanisms, but successful pathogens evade or suppress plant immunity via effectors delivered into the plant cell. Hyaloperonospora arabidopsidis (Hpa) causes downy mildew on Arabidopsis thaliana, and a genome sequence is available for isolate Emoy2. Here, we exploit the availability of genome sequences for Hpa and Arabidopsis to measure gene-expression changes in both Hpa and Arabidopsis simultaneously during infection. Using a high-throughput cDNA tag sequencing method, we reveal expression patterns of Hpa predicted effectors and Arabidopsis genes in compatible and incompatible interactions, and promoter elements associated with Hpa genes expressed during infection. By resequencing Hpa isolate Waco9, we found it evades Arabidopsis resistance gene RPP1 through deletion of the cognate recognized effector ATR1. Arabidopsis salicylic acid (SA)-responsive genes including PR1 were activated not only at early time points in the incompatible interaction but also at late time points in the compatible interaction. By histochemical analysis, we found that Hpa suppresses SA-inducible PR1 expression, specifically in the haustoriated cells into which host-translocated effectors are delivered, but not in non-haustoriated adjacent cells. Finally, we found a highly-expressed Hpa effector candidate that suppresses responsiveness to SA. As this approach can be easily applied to host-pathogen interactions for which both host and pathogen genome sequences are available, this work opens the door towards transcriptome studies in infection biology that should help unravel pathogen infection strategies and the mechanisms by which host defense responses are overcome. PMID:25329884

  11. Revealing charge carrier dynamics in squaraine:[6, 6]-phenyl-C 71-butyric acid methyl ester based organic solar cells

    Science.gov (United States)

    Rana, Aniket; Sharma, Chhavi; Prabhu, Deepak D.; Kumar, Mahesh; Karuvath, Yoosaf; Das, Suresh; Chand, Suresh; Singh, Rajiv K.

    2018-04-01

    Ultrafast charge carrier dynamics as well as the generation of polaron pair in squaraine (SQ) and squaraine:[6,6]-phenyl-C 71-butyric acid methyl ester (SQ:PCBM71) have been studied using ultrafast transient absorption spectroscopy (UTAS). The current study reveals that the pure SQ exhibits the creation of singlet and triplet states; however, incorporation of PCBM71 in SQ results in the formation of polaron pairs with ˜550ps lifetime, which in turn leads to the creation of free electrons in the device. We show that the considerable increment in monomolecular and bimolecular recombination in SQ:PCBM71 compared to pure SQ which describes the interfacial compatibility of SQ and PCBMC71 molecules. The present work not only provides the information about the carrier generation in SQ and SQ:PCBM71 but also gives the facts relating to the effect of PCBM71 mixing into the SQ which is very significant because the SQ has donor-acceptor-donor (D-A-D) structure and mixing one more acceptor can introduce more complex recombinations in the blend. These findings have been complimented by the charge transport study in the device using impedance spectroscopy. The various important transport parameters are transit time (τt), diffusion constant (Dn), global mobility (μ) and carrier lifetime (τr). The values of these parameters are 26.38 μs, 4.64x10-6 cm2s-1, 6.12x10-6 cm2V-1s-1 and 399 μs, respectively. To the best of our knowledge such study related to SQ is not present in the literature comprehensively.

  12. Elemental microchemistry, fatty acid profile and geometric morphometrics signatures of goose barnacles (Pollicipes pollicipes reveal their place of origin

    Directory of Open Access Journals (Sweden)

    Rui Albuquerque

    2014-06-01

    Full Text Available Seafood plays an important role in the socioeconomic, gastronomy and cultural heritage of Portuguese coastal communities. In the Iberian Peninsula, the goose barnacle Pollicipes pollicipes is the intertidal biological resource most heavily exploited by man, resulting on overexploitation of stocks. In the MPA of BNR P.pollicipes harvesting is however strictly regulated, making it a good example of marine resources management. Analytical methods able to identify the origin of goose barnacle would be an important tool to help the management of the trade. For such purpose, we investigated whether P. pollicipes have site-specific differences based on its elemental microchemistry (EM, fatty acid profile (FA and capitulum shape (CS. The analysis was performed on specimens collected from 3 sites in the BNR and 7 along a 300 km stretch of the Portuguese coast. For each individual we analysed the largest lateral shell for EM using ICP-MS, the FA content of the muscle using GC-FID, and the CS using geometric morphometrics. Discriminant function analyses (DFA for both EM and FA separately provided a high reclassification success (77.6% and 99% respectively, of cross-validated cases correctly classified, while for EM combined with FA allowed for a 100% reclassification success. DFA analysis based only on CS, revealed a low classification success (29.6%. These results show that EM and FA signatures can be a powerful tool to infer goose barnacles origin. Such “fingerprinting” approach can be used to track and identify goose barnacles origin, helping in establishing an origin certificate and increasing the potential value of biological resources from Portuguese MPAs.

  13. Expression profiling during arabidopsis/downy mildew interaction reveals a highly-expressed effector that attenuates responses to salicylic acid.

    Directory of Open Access Journals (Sweden)

    Shuta Asai

    2014-10-01

    Full Text Available Plants have evolved strong innate immunity mechanisms, but successful pathogens evade or suppress plant immunity via effectors delivered into the plant cell. Hyaloperonospora arabidopsidis (Hpa causes downy mildew on Arabidopsis thaliana, and a genome sequence is available for isolate Emoy2. Here, we exploit the availability of genome sequences for Hpa and Arabidopsis to measure gene-expression changes in both Hpa and Arabidopsis simultaneously during infection. Using a high-throughput cDNA tag sequencing method, we reveal expression patterns of Hpa predicted effectors and Arabidopsis genes in compatible and incompatible interactions, and promoter elements associated with Hpa genes expressed during infection. By resequencing Hpa isolate Waco9, we found it evades Arabidopsis resistance gene RPP1 through deletion of the cognate recognized effector ATR1. Arabidopsis salicylic acid (SA-responsive genes including PR1 were activated not only at early time points in the incompatible interaction but also at late time points in the compatible interaction. By histochemical analysis, we found that Hpa suppresses SA-inducible PR1 expression, specifically in the haustoriated cells into which host-translocated effectors are delivered, but not in non-haustoriated adjacent cells. Finally, we found a highly-expressed Hpa effector candidate that suppresses responsiveness to SA. As this approach can be easily applied to host-pathogen interactions for which both host and pathogen genome sequences are available, this work opens the door towards transcriptome studies in infection biology that should help unravel pathogen infection strategies and the mechanisms by which host defense responses are overcome.

  14. Remotely sensed hydrological isolation : a key factor predicting plant species distribution in fens

    NARCIS (Netherlands)

    Sanders, M.E.

    1999-01-01

    In fens the species composition, vegetation structure and succession rate are determined by vegetation management and water chemistry, particularly by the base status and nutrient status. Base-rich and nutrient-rich surface water causes fens to become eutrophied, which leads to an increased

  15. Microbial activity and community structure in two drained fen soils in the Ljubljana Marsh

    NARCIS (Netherlands)

    Kraigher, Barbara; Stres, Blaz; Hacin, Janez; Ausec, Luka; Mahne, Ivan; van Elsas, Jan D.; Mandic-Mulec, Ines

    Fen peatlands are specific wetland ecosystems containing high soil organic carbon (SOC). There is a general lack of knowledge about the microbial communities that abound in these systems. We examined the microbial activity and community structure in two fen soils differing in SOC content sampled

  16. HYDRO-ECOLOGICAL ANALYSIS OF THE FEN SYSTEM LIEPER POSSE, EASTERN GERMANY

    NARCIS (Netherlands)

    VANDIGGELEN, R; GROOTJANS, AP; KEMMERS, RH; KOOIJMAN, AM; SUCCOW, M; DEVRIES, NPJ; VANWIRDUM, G; Vries, N.P.J. de; Wirdum, G. van

    The Lieper Posse is a calcareous, ground water-fed fen system, situated in the end-moraine area of northeastern Germany. Nowadays the fen is partly drained and the vegetation adversely affected; hence regeneration measures are considered. Here we report a pilot survey of the actual vegetation cover

  17. Tung tree (Vernicia fordii, Hemsl.) genome and transcriptome sequencing reveals coordinate upregulation of fatty acid beta-oxidation and triacylglycerol biosynthesis pathways during eleostearic acid accumulation in seeds

    Science.gov (United States)

    The tung tree (Vernicia fordii) is one of only a few plant species that produces high oil-yielding seeds rich in a-eleostearic acid (a-ESA, 18:3'9cis,11trans,13trans), a conjugated trienoic fatty acid with valuable industrial and medical properties. Previous attempts have been made to engineer tung...

  18. NMR-based metabolomics reveals that conjugated double bond content and lipid storage efficiency in HepG2 cells are affected by fatty acid cis/trans configuration and chain length

    DEFF Research Database (Denmark)

    Najbjerg, Heidi; Young, Jette F; Bertram, Hanne Christine S.

    2011-01-01

    from conjugated double bonds (5.65, 5.94, and 6.28 ppm) in cells exposed to vaccenic acid, revealing that vaccenic acid upon uptake by the HepG2 cells is converted into a conjugated fatty acid. Upon exposure of the HepG2 cells to either butyric acid (C4:0), caproic acid (C6:0), lauric acid (C12...

  19. Newly identified essential amino acid residues affecting ^8-sphingolipid desaturase activity revealed by site-directed mutagenesis

    Science.gov (United States)

    In order to identify amino acid residues crucial for the enzymatic activity of ^8-sphingolipid desaturases, a sequence comparison was performed among ^8-sphingolipid desaturases and ^6-fatty acid desaturase from various plants. In addition to the known conserved cytb5 (cytochrome b5) HPGG motif and...

  20. A combined physiological and proteomic approach to reveal lactic-acid-induced alterations in Lactobacillus casei Zhang and its mutant with enhanced lactic acid tolerance.

    Science.gov (United States)

    Wu, Chongde; Zhang, Juan; Chen, Wei; Wang, Miao; Du, Guocheng; Chen, Jian

    2012-01-01

    Lactobacillus casei has traditionally been recognized as a probiotic and frequently used as an adjunct culture in fermented dairy products, where acid stress is an environmental condition commonly encountered. In the present study, we carried out a comparative physiological and proteomic study to investigate lactic-acid-induced alterations in Lactobacillus casei Zhang (WT) and its acid-resistant mutant. Analysis of the physiological data showed that the mutant exhibited 33.8% higher glucose phosphoenolpyruvate:sugar phosphotransferase system activity and lower glycolytic pH compared with the WT under acidic conditions. In addition, significant differences were detected in both cells during acid stress between intracellular physiological state, including intracellular pH, H(+)-ATPase activity, and intracellular ATP pool. Comparison of the proteomic data based on 2D-DIGE and i-TRAQ indicated that acid stress invoked a global change in both strains. The mutant protected the cells against acid damage by regulating the expression of key proteins involved in cellular metabolism, DNA replication, RNA synthesis, translation, and some chaperones. Proteome results were validated by Lactobacillus casei displaying higher intracellular aspartate and arginine levels, and the survival at pH 3.3 was improved 1.36- and 2.10-fold by the addition of 50-mM aspartate and arginine, respectively. To our knowledge, this is the first demonstration that aspartate may be involved in acid tolerance in Lactobacillus casei. Results presented here may help us understand acid resistance mechanisms and help formulate new strategies to enhance the industrial applications of this species.

  1. Compostos fenólicos e atividade antimicrobiana de Myracrodruon ...

    African Journals Online (AJOL)

    Usuario

    2012-04-20

    Apr 20, 2012 ... dichlorophenoxyacetic acid (2,4-D). After inoculation, the ... spectrophotometer UV-VIS (Analyser 850M) at 760 nm, using gallic acid as standard. ... and against the following isolates of fungi: Candida albicans. ATCC14053 ...

  2. Urinary Loss of Tricarboxylic Acid Cycle Intermediates As Revealed by Metabolomics Studies: An Underlying Mechanism to Reduce Lipid Accretion by Whey Protein Ingestion?

    Science.gov (United States)

    2015-01-01

    Whey protein intake is associated with the modulation of energy metabolism and altered body composition both in human subjects and in animals, but the underlying mechanisms are not yet elucidated. We fed obesity-prone C57BL/6J mice high-fat diets with either casein (HF casein) or whey (HF whey) for 6 weeks. At equal energy intake and apparent fat and nitrogen digestibility, mice fed HF whey stored less energy as lipids, evident both as lower white adipose tissue mass and as reduced liver lipids, compared with HF-casein-fed mice. Explorative analyses of 48 h urine, both by 1H NMR and LC–MS metabolomic platforms, demonstrated higher urinary excretion of tricarboxylic acid (TCA) cycle intermediates citric acid and succinic acid (identified by both platforms), and cis-aconitic acid and isocitric acid (identified by LC–MS platform) in the HF whey, relative to in the HF-casein-fed mice. Targeted LC–MS analyses revealed higher citric acid and cis-aconitic acid concentrations in fed state plasma, but not in liver of HF-whey-fed mice. We propose that enhanced urinary loss of TCA cycle metabolites drain available substrates for anabolic processes, such as lipogenesis, thereby leading to reduced lipid accretion in HF-whey-fed compared to HF-casein-fed mice. PMID:24702026

  3. Computerbasiert prüfen [Computer-based Assessment

    Directory of Open Access Journals (Sweden)

    Frey, Peter

    2006-08-01

    Full Text Available [english] Computer-based testing in medical education offers new perspectives. Advantages are sequential or adaptive testing, integration of movies or sound, rapid feedback to candidates and management of web-based question banks. Computer-based testing can also be implemented in an OSCE examination. In e-learning environments formative self-assessment are often implemented and gives helpful feedbacks to learners. Disadvantages in high-stake exams are the high requirements as well for the quality of testing (e.g. standard setting as additionally for the information technology and especially for security. [german] Computerbasierte Prüfungen im Medizinstudium eröffnen neue Möglichkeiten. Vorteile solcher Prüfungen liegen im sequentiellen oder adaptiven Prüfen, in der Integration von Bewegtbildern oder Ton, der raschen Auswertung und zentraler Verwaltung der Prüfungsfragen via Internet. Ein Einsatzgebiet mit vertretbarem Aufwand sind Prüfungen mit mehreren Stationen wie beispielsweise die OSCE-Prüfung. Computerbasierte formative Selbsttests werden im Bereiche e-learning häufig angeboten. Das hilft den Lernenden ihren Wissensstand besser einzuschätzen oder sich mit den Leistungen anderer zu vergleichen. Grenzen zeigen sich bei den summativen Prüfungen beim Prüfungsort, da zuhause Betrug möglich ist. Höhere ärztliche Kompetenzen wie Untersuchungstechnik oder Kommunikation eigenen sich kaum für rechnergestützte Prüfungen.

  4. a fenómenos epidemiológicos

    Directory of Open Access Journals (Sweden)

    Carlos Arturo Castro Castro

    2005-01-01

    Full Text Available En este artículo se presentan avances del proyecto de investigación modelación y simulación computacional usando sistemas de información geográfica (SIG con dinámicas de sistemas aplicados a fenómenos epidemiológicos con el cual se han abordado los principales modelos matemáticos usados en epidemiología (susceptible- infectado-recuperado: SIR, susceptible-infectado-recuperado-susceptible: SIRS, susceptible-infectado-susceptible: SIS, para su integración, espacialización y simulación usando diferentes técnicas computacionales con el fin de modelar factores críticos en la propagación de epidemias. Para correr el modelo, se tomaron los datos de una epidemia de asma en el distrito de Manhattan de Nueva York, del tutotial de ARCGIS® versión 8.3.

  5. Bartonellosis y fenómeno de Mooser

    Directory of Open Access Journals (Sweden)

    Hernando Groot

    1941-02-01

    Full Text Available Es conocido el fenómeno o reacción de Mooser que este investigador lograra al inocular a un curí por vía intraperitoneal sangre de un tifoso exantemático mejicano, y que consiste en una edema escroto-testicular bastante típico (1-6. En líneas generales se puede decir que un curí inoculado intraperitonealmente con sangre de un tifoso exantemático, presenta después de un período de incubación que varía entre dos días y dos semanas (variación que depende especialmente de las dosis inoculadas uan fiebre de 39,8 a 40,5 que puede durar de 3 a 14 días. Clínicamente la hembra muestra sólo la reacción febril, mientras que en el macho se observan lesiones inflamatorias escroto-testiculares características.

  6. Targeted metabolomic analysis reveals the association between the postprandial change in palmitic acid, branched-chain amino acids and insulin resistance in young obese subjects.

    Science.gov (United States)

    Liu, Liyan; Feng, Rennan; Guo, Fuchuan; Li, Ying; Jiao, Jundong; Sun, Changhao

    2015-04-01

    Obesity is the result of a positive energy balance and often leads to difficulties in maintaining normal postprandial metabolism. The changes in postprandial metabolites after an oral glucose tolerance test (OGTT) in young obese Chinese men are unclear. In this work, the aim is to investigate the complex metabolic alterations in obesity provoked by an OGTT using targeted metabolomics. We used gas chromatography-mass spectrometry and ultra high performance liquid chromatography-triple quadrupole mass spectrometry to analyze serum fatty acids, amino acids and biogenic amines profiles from 15 control and 15 obese subjects at 0, 30, 60, 90 and 120 min during an OGTT. Metabolite profiles from 30 obese subjects as independent samples were detected in order to validate the change of metabolites. There were the decreased levels of fatty acid, amino acids and biogenic amines after OGTT in obesity. At 120 min, percent change of 20 metabolites in obesity has statistical significance when comparing with the controls. The obese parameters was positively associated with changes in arginine and histidine (Pchange in palmitic acid (PA), branched-chain amino acids (BCAAs) and phenylalanine between 1 and 120 min were positively associated with fasting insulin and HOMA-IR (all Presistance in obesity. Our findings offer new insights in the complex physiological regulation of the metabolism during an OGTT in obesity. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  7. Screening of lactic acid bacteria from Indonesia reveals glucansucrase and fructansucrase genes in two different Weissella confusa strains from soya

    NARCIS (Netherlands)

    Malik, Amarila; Radji, Maksum; Kralj, Slavko; Dijkhuizen, Lubbert

    2009-01-01

    Homopolysaccharide (glucan and fructan) synthesis from sucrose by sucrase enzymes in lactic acid bacteria (LAB) has been well studied in the genera Leuconostoc, Streptococcus and Lactobacillus. This study aimed to identify and characterize genes encoding glucansucrase/glucosyltransferase (GTF) and

  8. Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon.

    Directory of Open Access Journals (Sweden)

    Lei Gao

    Full Text Available Soluble sugars and organic acids are important components of fruit flavor and have a strong impact on the overall organoleptic quality of watermelon (Citrullus lanatus fruit. Several studies have analyzed the expression levels of the genes related to soluble sugar accumulation and the dynamic changes in their content during watermelon fruit development and ripening. Nevertheless, to date, there have been no reports on the organic acid content in watermelon or the genes regulating their synthesis. In this study, the soluble sugars and organic acids in watermelon were measured and a comparative transcriptome analysis was performed to identify the key genes involved in the accumulation of these substances during fruit development and ripening. The watermelon cultivar '203Z' and its near-isogenic line (NIL 'SW' (in the '203Z' background were used as experimental materials. The results suggested that soluble sugar consist of fructose, glucose and sucrose while malic-, citric-, and oxalic acids are the primary organic acids in watermelon fruit. Several differentially expressed genes (DEGs related to soluble sugar- and organic acid accumulation and metabolism were identified. These include the DEGs encoding raffinose synthase, sucrose synthase (SuSy, sucrose-phosphate synthase (SPSs, insoluble acid invertases (IAI, NAD-dependent malate dehydrogenase (NAD-cyt MDH, aluminum-activated malate transporter (ALMT, and citrate synthase (CS. This is the first report addressing comparative transcriptome analysis via NILs materials in watermelon fruit. These findings provide an important basis for understanding the molecular mechanism that leads to soluble sugar and organic acid accumulation and metabolism during watermelon fruit development and ripening.

  9. Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon.

    Science.gov (United States)

    Gao, Lei; Zhao, Shengjie; Lu, Xuqiang; He, Nan; Zhu, Hongju; Dou, Junling; Liu, Wenge

    2018-01-01

    Soluble sugars and organic acids are important components of fruit flavor and have a strong impact on the overall organoleptic quality of watermelon (Citrullus lanatus) fruit. Several studies have analyzed the expression levels of the genes related to soluble sugar accumulation and the dynamic changes in their content during watermelon fruit development and ripening. Nevertheless, to date, there have been no reports on the organic acid content in watermelon or the genes regulating their synthesis. In this study, the soluble sugars and organic acids in watermelon were measured and a comparative transcriptome analysis was performed to identify the key genes involved in the accumulation of these substances during fruit development and ripening. The watermelon cultivar '203Z' and its near-isogenic line (NIL) 'SW' (in the '203Z' background) were used as experimental materials. The results suggested that soluble sugar consist of fructose, glucose and sucrose while malic-, citric-, and oxalic acids are the primary organic acids in watermelon fruit. Several differentially expressed genes (DEGs) related to soluble sugar- and organic acid accumulation and metabolism were identified. These include the DEGs encoding raffinose synthase, sucrose synthase (SuSy), sucrose-phosphate synthase (SPSs), insoluble acid invertases (IAI), NAD-dependent malate dehydrogenase (NAD-cyt MDH), aluminum-activated malate transporter (ALMT), and citrate synthase (CS). This is the first report addressing comparative transcriptome analysis via NILs materials in watermelon fruit. These findings provide an important basis for understanding the molecular mechanism that leads to soluble sugar and organic acid accumulation and metabolism during watermelon fruit development and ripening.

  10. Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon

    Science.gov (United States)

    Gao, Lei; Zhao, Shengjie; Lu, Xuqiang; He, Nan; Zhu, Hongju; Dou, Junling

    2018-01-01

    Soluble sugars and organic acids are important components of fruit flavor and have a strong impact on the overall organoleptic quality of watermelon (Citrullus lanatus) fruit. Several studies have analyzed the expression levels of the genes related to soluble sugar accumulation and the dynamic changes in their content during watermelon fruit development and ripening. Nevertheless, to date, there have been no reports on the organic acid content in watermelon or the genes regulating their synthesis. In this study, the soluble sugars and organic acids in watermelon were measured and a comparative transcriptome analysis was performed to identify the key genes involved in the accumulation of these substances during fruit development and ripening. The watermelon cultivar ‘203Z’ and its near-isogenic line (NIL) ‘SW’ (in the ‘203Z’ background) were used as experimental materials. The results suggested that soluble sugar consist of fructose, glucose and sucrose while malic-, citric-, and oxalic acids are the primary organic acids in watermelon fruit. Several differentially expressed genes (DEGs) related to soluble sugar- and organic acid accumulation and metabolism were identified. These include the DEGs encoding raffinose synthase, sucrose synthase (SuSy), sucrose-phosphate synthase (SPSs), insoluble acid invertases (IAI), NAD-dependent malate dehydrogenase (NAD-cyt MDH), aluminum-activated malate transporter (ALMT), and citrate synthase (CS). This is the first report addressing comparative transcriptome analysis via NILs materials in watermelon fruit. These findings provide an important basis for understanding the molecular mechanism that leads to soluble sugar and organic acid accumulation and metabolism during watermelon fruit development and ripening. PMID:29324867

  11. Analysis of hydroxycinnamic acid degradation in Agrobacterium fabrum reveals a coenzyme A-dependent, beta-oxidative deacetylation pathway.

    Science.gov (United States)

    Campillo, Tony; Renoud, Sébastien; Kerzaon, Isabelle; Vial, Ludovic; Baude, Jessica; Gaillard, Vincent; Bellvert, Floriant; Chamignon, Cécile; Comte, Gilles; Nesme, Xavier; Lavire, Céline; Hommais, Florence

    2014-06-01

    The soil- and rhizosphere-inhabiting bacterium Agrobacterium fabrum (genomospecies G8 of the Agrobacterium tumefaciens species complex) is known to have species-specific genes involved in ferulic acid degradation. Here, we characterized, by genetic and analytical means, intermediates of degradation as feruloyl coenzyme A (feruloyl-CoA), 4-hydroxy-3-methoxyphenyl-β-hydroxypropionyl-CoA, 4-hydroxy-3-methoxyphenyl-β-ketopropionyl-CoA, vanillic acid, and protocatechuic acid. The genes atu1416, atu1417, and atu1420 have been experimentally shown to be necessary for the degradation of ferulic acid. Moreover, the genes atu1415 and atu1421 have been experimentally demonstrated to be essential for this degradation and are proposed to encode a phenylhydroxypropionyl-CoA dehydrogenase and a 4-hydroxy-3-methoxyphenyl-β-ketopropionic acid (HMPKP)-CoA β-keto-thiolase, respectively. We thus demonstrated that the A. fabrum hydroxycinnamic degradation pathway is an original coenzyme A-dependent β-oxidative deacetylation that could also transform p-coumaric and caffeic acids. Finally, we showed that this pathway enables the metabolism of toxic compounds from plants and their use for growth, likely providing the species an ecological advantage in hydroxycinnamic-rich environments, such as plant roots or decaying plant materials.

  12. Partitioning of soil CO2 efflux in un-manipulated and experimentally flooded plots of a temperate fen

    Science.gov (United States)

    Wunderlich, S.; Borken, W.

    2012-08-01

    Peatlands store large amounts of organic carbon, but the carbon stock is sensitive to changes in precipitation or water table manipulations. Restoration of drained peatlands by drain blocking and flooding is a common measure to conserve and augment the carbon stock of peatland soils. Here, we report to what extent flooding affected the contribution of heterotrophic and rhizosphere respiration to soil CO2 efflux in a grass-dominated mountain fen in Germany. Soil CO2 efflux was measured in three un-manipulated control plots and three flooded plots in two consecutive years. Flooding was achieved by permanent irrigation during the growing seasons. Radiocarbon signatures of CO2 from different sources including soil CO2 efflux, incubated peat cores and live grass roots were repeatedly analyzed for partitioning of soil CO2 efflux. Additionally, heterotrophic respiration and its radiocarbon signature were determined by eliminating rhizosphere respiration in trenched subplots (only control). In the control plots, rhizosphere respiration determined by 14C signatures contributed between 47 and 61% during the growing season, but was small (4 ± 8%) immediately before budding. Trenching revealed a smaller rhizosphere contribution of 33 ± 8% (2009) and 22 ± 9% (2010) during growing seasons. Flooding reduced annual soil CO2 efflux of the fen by 42% in 2009 and by 30% in 2010. The reduction was smaller in 2010 mainly through naturally elevated water level in the control plots. A one-week interruption of irrigation caused a strong short-lived increase in soil CO2 efflux, demonstrating the sensitivity of the fen to water table drawdown near the peat surface. The reduction in soil CO2 efflux in the flooded plots diminished the relative proportion of rhizosphere respiration from 56 to 46%, suggesting that rhizosphere respiration was slightly more sensitive to flooding than heterotrophic respiration.

  13. 4-Phenylbutyric Acid Reveals Good Beneficial Effects on Vital Organ Function via Anti-Endoplasmic Reticulum Stress in Septic Rats.

    Science.gov (United States)

    Liu, Liangming; Wu, Huiling; Zang, JiaTao; Yang, Guangming; Zhu, Yu; Wu, Yue; Chen, Xiangyun; Lan, Dan; Li, Tao

    2016-08-01

    Sepsis and septic shock are the common complications in ICUs. Vital organ function disorder contributes a critical role in high mortality after severe sepsis or septic shock, in which endoplasmic reticulum stress plays an important role. Whether anti-endoplasmic reticulum stress with 4-phenylbutyric acid is beneficial to sepsis and the underlying mechanisms are not known. Laboratory investigation. State Key Laboratory of Trauma, Burns and Combined Injury. Sprague-Dawley rats. Using cecal ligation and puncture-induced septic shock rats, lipopolysaccharide-treated vascular smooth muscle cells, and cardiomyocytes, effects of 4-phenylbutyric acid on vital organ function and the relationship with endoplasmic reticulum stress and endoplasmic reticulum stress-mediated inflammation, apoptosis, and oxidative stress were observed. Conventional treatment, including fluid resuscitation, vasopressin, and antibiotic, only slightly improved the hemodynamic variable, such as mean arterial blood pressure and cardiac output, and slightly improved the vital organ function and the animal survival of septic shock rats. Supplementation of 4-phenylbutyric acid (5 mg/kg; anti-endoplasmic reticulum stress), especially administered at early stage, significantly improved the hemodynamic variables, vital organ function, such as liver, renal, and intestinal barrier function, and animal survival in septic shock rats. 4-Phenylbutyric acid application inhibited the endoplasmic reticulum stress and endoplasmic reticulum stress-related proteins, such as CCAAT/enhancer-binding protein homologous protein in vital organs, such as heart and superior mesenteric artery after severe sepsis. Further studies showed that 4-phenylbutyric acid inhibited endoplasmic reticulum stress-mediated cytokine release, apoptosis, and oxidative stress via inhibition of nuclear factor-κB, caspase-3 and caspase-9, and increasing glutathione peroxidase and superoxide dismutase expression, respectively. Anti

  14. Hepatitis B virus X protein (HBx)-induced abnormalities of nucleic acid metabolism revealed by (1)H-NMR-based metabonomics.

    Science.gov (United States)

    Dan Yue; Zhang, Yuwei; Cheng, Liuliu; Ma, Jinhu; Xi, Yufeng; Yang, Liping; Su, Chao; Shao, Bin; Huang, Anliang; Xiang, Rong; Cheng, Ping

    2016-04-14

    Hepatitis B virus X protein (HBx) plays an important role in HBV-related hepatocarcinogenesis; however, mechanisms underlying HBx-mediated carcinogenesis remain unclear. In this study, an NMR-based metabolomics approach was applied to systematically investigate the effects of HBx on cell metabolism. EdU incorporation assay was conducted to examine the effects of HBx on DNA synthesis, an important feature of nucleic acid metabolism. The results revealed that HBx disrupted metabolism of glucose, lipids, and amino acids, especially nucleic acids. To understand the potential mechanism of HBx-induced abnormalities of nucleic acid metabolism, gene expression profiles of HepG2 cells expressing HBx were investigated. The results showed that 29 genes involved in DNA damage and DNA repair were differentially expressed in HBx-expressing HepG2 cells. HBx-induced DNA damage was further demonstrated by karyotyping, comet assay, Western blotting, immunofluorescence and immunohistochemistry analyses. Many studies have previously reported that DNA damage can induce abnormalities of nucleic acid metabolism. Thus, our results implied that HBx initially induces DNA damage, and then disrupts nucleic acid metabolism, which in turn blocks DNA repair and induces the occurrence of hepatocellular carcinoma (HCC). These findings further contribute to our understanding of the occurrence of HCC.

  15. Omics-based approaches reveal phospholipids remodeling of Rhizopus oryzae responding to furfural stress for fumaric acid-production from xylose.

    Science.gov (United States)

    Pan, Xinrong; Liu, Huanhuan; Liu, Jiao; Wang, Cheng; Wen, Jianping

    2016-12-01

    In order to relieve the toxicity of furfural on Rhizopus oryzae fermentation, the molecular mechanism of R. oryzae responding to furfural stress for fumaric acid-production was investigated by omics-based approaches. In metabolomics analysis, 29 metabolites including amino acid, sugars, polyols and fatty acids showed significant changes for maintaining the basic cell metabolism at the cost of lowering fumaric acid production. To further uncover the survival mechanism, lipidomics was carried out, revealing that phosphatidylcholine, phosphatidylglycerol, phosphatidylinositol and polyunsaturated acyl chains might be closely correlated with R. oryzae's adapting to furfural stress. Based on the above omics analysis, lecithin, inositol and soybean oil were exogenously supplemented separately with an optimized concentration in the presence of furfural, which increased fumaric acid titer from 5.78g/L to 10.03g/L, 10.05g/L and 12.13g/L (increased by 73.5%, 73.8% and 110%, respectively). These findings provide a methodological guidance for hemicellulose-fumaric acid development. Copyright © 2016 Elsevier Ltd. All rights reserved.

  16. Raman Spectroscopic Analysis Reveals Abnormal Fatty Acid Composition in Tumor Micro- and Macroenvironments in Human Breast and Rat Mammary Cancer.

    Science.gov (United States)

    You, Sixian; Tu, Haohua; Zhao, Youbo; Liu, Yuan; Chaney, Eric J; Marjanovic, Marina; Boppart, Stephen A

    2016-09-06

    Fatty acids play essential roles in the growth and metastasis of cancer cells. To facilitate their avid growth and proliferation, cancer cells not only alter the fatty acid synthesis and metabolism intracellularly and extracellularly, but also in the macroenvironment via direct or indirect pathways. We report here, using Raman micro-spectroscopy, that an increase in the production of polyunsaturated fatty acids (PUFAs) was identified in both cancerous and normal appearing breast tissue obtained from breast cancer patients and tumor-bearing rats. By minimizing confounding effects from mixed chemicals and optimizing the signal-to-noise ratio of Raman spectra, we observed a large-scale transition from monounsaturated fatty acids to PUFAs in the tumor while only a small subset of fatty acids transitioned to PUFAs in the tumor micro- and macroenvironment. These data have important implications for further clarifying the macroenvironmental effect of cancer progression and provide new potential approaches for characterizing the tumor micro- and macroenvironment of breast cancer in both pre-clinical animal studies and clinical applications.

  17. Atributos privativos e musicais do fenômeno noturno

    Directory of Open Access Journals (Sweden)

    Clovis Salgado Gontijo Oliveira Clovis Salgado Gontijo Oliveira

    2015-11-01

    Full Text Available Desde a sua análise como mero fenômeno, elaborada com pretensões de neutralidade, a noite é por nós concebida a partir de atributos predominantemente privativos. Estes se acentuam culturalmente na tradição ocidental, que tende a desvalorizá-los como signos de um vazio de ordem ontológica, epistemológica, ética e, até mesmo, estética. Associadas a uma esfera de negatividade, tais privações parecem impedir ou, pelo menos, dificultar o tratamento artístico da experiência noturna, sobretudo quando este pretende se realizar num modelo de arte em continuidade com uma proposta visual e iluminista. Tomando como base nossa tese de doutorado, intitulada XXX, pretendemos aqui analisar de que modo os atributos privativos referentes à noite não só dificultam a sua mímese quanto estão presentes, sob nova interpretação, em contextos que revalorizam positivamente a experiência noturna, potencializando-a, assim, como motivo. Dentre estes contextos, concederemos particular atenção à arte musical, que, coincidentemente, manifesta para o teórico e o ouvinte alguns dos mesmos atributos privativos identificados na análise primária do noturno. A fim de efetuar este estudo, recorreremos ao pensamento de Vladimir Jankélévitch, principal fundamentação teórica da tese cujo percurso será sintetizado neste artigo.

  18. Formation cross section of iron-60 with reactor neutrons in 59Fe(n, γ)60Fe reaction

    International Nuclear Information System (INIS)

    Sato, T.; Suzuki, T.

    1993-01-01

    Ingrowth of 60 Co radioactivity in an iron sample irradiated in a nuclear reactor has been measured for determination of formation cross section of 60 Fe in the 59 Fe(n, γ) 60 Fe reaction with reactor neutrons. After 5 years cooling, the irradiated iron was purified from 60 Co and other radioactive nuclides by an anion exchange separation method and isopropyl ether extraction in hydrochloric acid. The amount of 60 Co ingrowth was measured by γ-spectrometry using a Ge-detector coupled to a multichannel pulse height analyzer 4 years after the purification of iron. Neutron flux of the irradiation position was calculated from the amount of 55 Fe produced. The observed value of 12.5 ± 2.8 barn is slightly greater than reported value for burnup cross section of 59 Fe(n, x)X, where x refers γ, α, d, p and 2n, and X is any nuclide produced by the above reactions. (author) 8 refs.; 2 tabs

  19. Response of anaerobic carbon cycling to water table manipulation in an Alaskan rich fen

    Science.gov (United States)

    Kane, E.S.; Chivers, M.R.; Turetsky, M.R.; Treat, C.C.; Petersen, D.G.; Waldrop, M.; Harden, J.W.; McGuire, A.D.

    2013-01-01

    To test the effects of altered hydrology on organic soil decomposition, we investigated CO2 and CH4 production potential of rich-fen peat (mean surface pH = 6.3) collected from a field water table manipulation experiment including control, raised and lowered water table treatments. Mean anaerobic CO2 production potential at 10 cm depth (14.1 ± 0.9 μmol C g−1 d−1) was as high as aerobic CO2 production potential (10.6 ± 1.5 μmol C g−1 d−1), while CH4 production was low (mean of 7.8 ± 1.5 nmol C g−1 d−1). Denitrification enzyme activity indicated a very high denitrification potential (197 ± 23 μg N g−1 d−1), but net NO-3 reduction suggested this was a relatively minor pathway for anaerobic CO2 production. Abundances of denitrifier genes (nirK and nosZ) did not change across water table treatments. SO2-4 reduction also did not appear to be an important pathway for anaerobic CO2 production. The net accumulation of acetate and formate as decomposition end products in the raised water table treatment suggested that fermentation was a significant pathway for carbon mineralization, even in the presence of NO-3. Dissolved organic carbon (DOC) concentrations were the strongest predictors of potential anaerobic and aerobic CO2 production. Across all water table treatments, the CO2:CH4 ratio increased with initial DOC leachate concentrations. While the field water table treatment did not have a significant effect on mean CO2 or CH4 production potential, the CO2:CH4 ratio was highest in shallow peat incubations from the drained treatment. These data suggest that with continued drying or with a more variable water table, anaerobic CO2 production may be favored over CH4 production in this rich fen. Future research examining the potential for dissolved organic substances to facilitate anaerobic respiration, or alternative redox processes that limit the effectiveness of organic acids as substrates in anaerobic metabolism, would help explain additional

  20. Mapping of Saccharomyces cerevisiae metabolites in fermenting wheat straight-dough reveals succinic acid as pH-determining factor.

    Science.gov (United States)

    Jayaram, Vinay B; Cuyvers, Sven; Lagrain, Bert; Verstrepen, Kevin J; Delcour, Jan A; Courtin, Christophe M

    2013-01-15

    Fermenting yeast does not merely cause dough leavening, but also contributes to the bread aroma and might alter dough rheology. Here, the yeast carbon metabolism was mapped during bread straight-dough fermentation. The concentration of most metabolites changed quasi linearly as a function of fermentation time. Ethanol and carbon dioxide concentrations reached up to 60 mmol/100g flour. Interestingly, high levels of glycerol (up to 10 mmol/100g flour) and succinic acid (up to 1.6 mmol/100g flour) were produced during dough fermentation. Further tests showed that, contrary to current belief, the pH decrease in fermenting dough is primarily caused by the production of succinic acid by the yeast instead of carbon dioxide dissolution or bacterial organic acids. Together, our results provide a comprehensive overview of metabolite production during dough fermentation and yield insight into the importance of some of these metabolites for dough properties. Copyright © 2012 Elsevier Ltd. All rights reserved.

  1. Metabolism of Seriola lalandi during Starvation as Revealed by Fatty Acid Analysis and Compound-Specific Analysis of Stable Isotopes within Amino Acids.

    Directory of Open Access Journals (Sweden)

    Fernando Barreto-Curiel

    Full Text Available Fish starvation is defined as food deprivation for a long period of time, such that physiological processes become confined to basal metabolism. Starvation provides insights in physiological processes without interference from unknown factors in digestion and nutrient absorption occurring in fed state. Juveniles of amberjack Seriola lalandi were isotopically equilibrated to a formulated diet for 60 days. One treatment consisted of fish that continued to be fed and fish in the other treatment were not fed for 35 days. The isotopic signatures prior to the beginning of and after the starvation period, for fish in the starvation and control treatments, were analysed for lipid content, fatty acid composition and isotopic analysis of bulk (EA-IRMS and of amino acids (compound specific isotope analysis, CSIA. There were three replicates for the starvation group. Fatty acid content in muscle and liver tissue before and after starvation was determined to calculate percent change. Results showed that crude lipid was the most used source of energy in most cases; the PUFAs and LC-PUFAs were highly conserved. According to the protein signature in bulk (δ15N and per amino acid (δ13C and δ15N, in muscle tissue, protein synthesis did not appear to occur substantially during starvation, whereas in liver, increases in δ13C and δ15N indicate that protein turnover occurred, probably for metabolic routing to energy-yielding processes. As a result, isotopic values of δ15N in muscle tissue do not change, whereas CSIA net change occurred in the liver tissue. During the study period of 35 days, muscle protein was largely conserved, being neither replenished from amino acid pools in the plasma and liver nor catabolized.

  2. Human FEN1 Expression and Solubility Patterson in DNA Replication and Repair

    National Research Council Canada - National Science Library

    Carrier, Richard

    1999-01-01

    Flap endo-/exonuclease (FEN1) is a highly conserved protein shown to be one of 10 essential human proteins required for the production of form I DNA following DNA replication from the simian virus 40 (SV40...

  3. Landscape history, calcareous fen development and historical events in the Slovak Eastern Carpathians

    Czech Academy of Sciences Publication Activity Database

    Jamrichová, Eva; Hájková, Petra; Horsák, M.; Rybníčková, E.; Lacina, A.; Hájek, Michal

    2014-01-01

    Roč. 23, č. 5 (2014), s. 497-513 ISSN 0939-6314 Institutional support: RVO:67985939 Keywords : forest development * spring fen * multi-proxy Subject RIV: EF - Botanics Impact factor: 2.648, year: 2014

  4. Meta-analysis of global transcriptomics reveals conserved genetic pathways of Quercetin and Tannic acid mediated longevity in C. elegans

    Directory of Open Access Journals (Sweden)

    Kerstin ePietsch

    2012-04-01

    Full Text Available Recent research has highlighted that the polyphenols Quercetin and Tannic acid are capable of extending the lifespan of C. elegans. To gain a deep understanding of the underlying molecular genetics, we analyzed the global transcriptional patterns of nematodes exposed to Quercetin or Tannic acid concentrations that are non-effective (in lifespan extension, lifespan extending or toxic. By means of an intricate meta-analysis it was possible to compare the transcriptomes of polyphenol exposure to recently published data sets derived from i longevity mutants or ii infection. This detailed comparative in silico analysis facilitated the identification of compound specific and overlapping transcriptional profiles and allowed the formulation of mechanistic models of Quercetin and Tannic acid mediated longevity. Lifespan extension due to Quercetin was predominantly driven by the metabolome, TGF-beta signaling, Insulin-like signaling and the p38 MAPK pathway and Tannic acid’s impact involved, in part, the amino acid metabolism and was modulated by the TGF-beta and the p38 MAPK pathways. DAF-12, which integrates TGF-beta and Insulin-like downstream signaling, therefore seems to be a crucial regulator for both polyphenols.

  5. Untangling the Effect of Fatty Acid Addition at Species Level Revealed Different Transcriptional Responses of the Biogas Microbial Community Members

    DEFF Research Database (Denmark)

    Treu, Laura; Campanaro, Stefano; Kougias, Panagiotis

    2016-01-01

    In the present study, RNA-sequencing was used to elucidate the change of anaerobic digestion metatranscriptome after long chain fatty acids (oleate) exposure. To explore the general transcriptional behavior of the microbiome, the analysis was first performed on shotgun reads without considering...

  6. Amino acid composition reveals functional diversity of zooplankton in tropical lakes related to geography, taxonomy and productivity.

    Science.gov (United States)

    Aranguren-Riaño, Nelson J; Guisande, Cástor; Shurin, Jonathan B; Jones, Natalie T; Barreiro, Aldo; Duque, Santiago R

    2018-04-16

    Variation in resource use among species determines their potential for competition and co-existence, as well as their impact on ecosystem processes. Planktonic crustaceans consume a range of micro-organisms that vary among habitats and species, but these differences in resource consumption are difficult to characterize due to the small size of the organisms. Consumers acquire amino acids from their diet, and the composition of tissues reflects both the use of different resources and their assimilation in proteins. We examined the amino acid composition of common crustacean zooplankton from 14 tropical lakes in Colombia in three regions (the Amazon floodplain, the eastern range of the Andes, and the Caribbean coast). Amino acid composition varied significantly among taxonomic groups and the three regions. Functional richness in amino acid space was greatest in the Amazon, the most productive region, and tended to be positively related to lake trophic status, suggesting the niche breadth of the community could increase with ecosystem productivity. Functional evenness increased with lake trophic status, indicating that species were more regularly distributed within community-wide niche space in more productive lakes. These results show that zooplankton resource use in tropical lakes varies with both habitat and taxonomy, and that lake productivity may affect community functional diversity and the distribution of species within niche space.

  7. Characterization of the mycobacterial acyl-CoA carboxylase holo complexes reveals their functional expansion into amino acid catabolism.

    Directory of Open Access Journals (Sweden)

    Matthias T Ehebauer

    2015-02-01

    Full Text Available Biotin-mediated carboxylation of short-chain fatty acid coenzyme A esters is a key step in lipid biosynthesis that is carried out by multienzyme complexes to extend fatty acids by one methylene group. Pathogenic mycobacteria have an unusually high redundancy of carboxyltransferase genes and biotin carboxylase genes, creating multiple combinations of protein/protein complexes of unknown overall composition and functional readout. By combining pull-down assays with mass spectrometry, we identified nine binary protein/protein interactions and four validated holo acyl-coenzyme A carboxylase complexes. We investigated one of these--the AccD1-AccA1 complex from Mycobacterium tuberculosis with hitherto unknown physiological function. Using genetics, metabolomics and biochemistry we found that this complex is involved in branched amino-acid catabolism with methylcrotonyl coenzyme A as the substrate. We then determined its overall architecture by electron microscopy and found it to be a four-layered dodecameric arrangement that matches the overall dimensions of a distantly related methylcrotonyl coenzyme A holo complex. Our data argue in favor of distinct structural requirements for biotin-mediated γ-carboxylation of α-β unsaturated acid esters and will advance the categorization of acyl-coenzyme A carboxylase complexes. Knowledge about the underlying structural/functional relationships will be crucial to make the target category amenable for future biomedical applications.

  8. Trophic structure of cold-water coral communities revealed from the analysis of tissue isotopes and fatty acid composition

    NARCIS (Netherlands)

    Van Oevelen, D.; Duineveld, G.; Lavaleye, M.S.S.; Kutti, T.; Soetaert, K.

    2018-01-01

    The trophic structure of cold-water coral reef communities at two contrasting locations, the 800-m deep Belgica Mounds (Irish margin) and the 300-m deep Træna reefs (Norwegian Shelf), was investigated using stable isotope (δ13C and δ15N) and fatty-acid composition analysis. A broad range of

  9. The Acid-Base Balance Between Organic Acids and Circumneutral Ground Waters in Large Peatlands

    Science.gov (United States)

    Siegel, D. I.; Glaser, P. H.; So, J.

    2006-05-01

    Organic acids supply most of the acidity in the surface waters of bogs in peatlands. Yet, the fundamental geochemical properties of peatland organic acids are still poorly known. To assess the geochemical properties of typical organic acid assemblages in peatlands, we used a triprotic analog model for peat pore waters and surface waters in the Glacial Lake Agassiz Peatlands, optimizing on charge balance and calibrated to estimates of mole site density in DOC and triprotic acid dissociation constants. Before the calibration process, all bog waters and 76% of fen waters had more than +20% charge imbalance. After calibration, most electrochemically balanced within 20%. In the best calibration, the mole site denisty of bog DOC was estimated as ~0.05 mmol/mmol C., approximately 6 times smaller than that for fen DOC or the DOC in the fen deeper fen peats that underlie bogs. The three modeled de-protonation constants were; pKa1 = ~3.0, pKa2 = ~4.5 and pKa3 = ~7.0 for the bog DOC, and; pKa1 = ~5.2, pKa2 =~ 6.5 and pKa3 = ~7.0 for the fen DOC. Bog DOC, behaves as a strong acid despite its small mole site density. The DOC in bog runoff can therefore theoretically acidify the surface waters in adjacent fens wherever these waters do not receive sufficient buffering alkalinity from active groundwater seepage.

  10. Scale-location specific relations between soil nutrients and topographic factors in the Fen River Basin, Chinese Loess Plateau

    Science.gov (United States)

    Zhu, Hongfen; Bi, Rutian; Duan, Yonghong; Xu, Zhanjun

    2017-06-01

    Understanding scale- and location-specific variations of soil nutrients in cultivated land is a crucial consideration for managing agriculture and natural resources effectively. In the present study, wavelet coherency was used to reveal the scale-location specific correlations between soil nutrients, including soil organic matter (SOM), total nitrogen (TN), available phosphorus (AP), and available potassium (AK), as well as topographic factors (elevation, slope, aspect, and wetness index) in the cultivated land of the Fen River Basin in Shanxi Province, China. The results showed that SOM, TN, AP, and AK were significantly inter-correlated, and that the scales at which soil nutrients were correlated differed in different landscapes, and were generally smaller in topographically rougher terrain. All soil nutrients but TN were significantly influenced by the wetness index at relatively large scales (32-72 km) and AK was significantly affected by the aspect at large scales at partial locations, showing localized features. The results of this study imply that the wetness index should be taken into account during farming practices to improve the soil nutrients of cultivated land in the Fen River Basin at large scales.

  11. Effects of Perfluorooctanoic Acid on Metabolic Profiles in Brain and Liver of Mouse Revealed by a High-throughput Targeted Metabolomics Approach

    Science.gov (United States)

    Yu, Nanyang; Wei, Si; Li, Meiying; Yang, Jingping; Li, Kan; Jin, Ling; Xie, Yuwei; Giesy, John P.; Zhang, Xiaowei; Yu, Hongxia

    2016-04-01

    Perfluorooctanoic acid (PFOA), a perfluoroalkyl acid, can result in hepatotoxicity and neurobehavioral effects in animals. The metabolome, which serves as a connection among transcriptome, proteome and toxic effects, provides pathway-based insights into effects of PFOA. Since understanding of changes in the metabolic profile during hepatotoxicity and neurotoxicity were still incomplete, a high-throughput targeted metabolomics approach (278 metabolites) was used to investigate effects of exposure to PFOA for 28 d on brain and liver of male Balb/c mice. Results of multivariate statistical analysis indicated that PFOA caused alterations in metabolic pathways in exposed individuals. Pathway analysis suggested that PFOA affected metabolism of amino acids, lipids, carbohydrates and energetics. Ten and 18 metabolites were identified as potential unique biomarkers of exposure to PFOA in brain and liver, respectively. In brain, PFOA affected concentrations of neurotransmitters, including serotonin, dopamine, norepinephrine, and glutamate in brain, which provides novel insights into mechanisms of PFOA-induced neurobehavioral effects. In liver, profiles of lipids revealed involvement of β-oxidation and biosynthesis of saturated and unsaturated fatty acids in PFOA-induced hepatotoxicity, while alterations in metabolism of arachidonic acid suggesting potential of PFOA to cause inflammation response in liver. These results provide insight into the mechanism and biomarkers for PFOA-induced effects.

  12. Protein Conformation Ensembles Monitored by HDX Reveal a Structural Rationale for Abscisic Acid Signaling Protein Affinities and Activities

    OpenAIRE

    West, Graham M.; Pascal, Bruce D.; Ng, Ley-Moy; Soon, Fen-Fen; Melcher, Karsten; Xu, H. Eric; Chalmers, Michael J.; Griffin, Patrick R.

    2013-01-01

    Plants regulate growth and respond to environmental stress through abscisic acid (ABA) regulated pathways, and as such these pathways are of primary interest for biological and agricultural research. The ABA response is first perceived by the PYR/PYL/RCAR class of START protein receptors. These ABA activated receptors disrupt phosphatase inhibition of Snf1-related kinases (SnRKs) enabling kinase signaling. Here, insights into the structural mechanism of proteins in the ABA signaling pathway (...

  13. Mass Spectrometry Analysis Coupled with de novo Sequencing Reveals Amino Acid Substitutions in Nucleocapsid Protein from Influenza A Virus

    Directory of Open Access Journals (Sweden)

    Zijian Li

    2014-02-01

    Full Text Available Amino acid substitutions in influenza A virus are the main reasons for both antigenic shift and virulence change, which result from non-synonymous mutations in the viral genome. Nucleocapsid protein (NP, one of the major structural proteins of influenza virus, is responsible for regulation of viral RNA synthesis and replication. In this report we used LC-MS/MS to analyze tryptic digestion of nucleocapsid protein of influenza virus (A/Puerto Rico/8/1934 H1N1, which was isolated and purified by SDS poly-acrylamide gel electrophoresis. Thus, LC-MS/MS analyses, coupled with manual de novo sequencing, allowed the determination of three substituted amino acid residues R452K, T423A and N430T in two tryptic peptides. The obtained results provided experimental evidence that amino acid substitutions resulted from non-synonymous gene mutations could be directly characterized by mass spectrometry in proteins of RNA viruses such as influenza A virus.

  14. Volatile profiling reveals intracellular metabolic changes in Aspergillus parasiticus: veA regulates branched chain amino acid and ethanol metabolism

    Directory of Open Access Journals (Sweden)

    Roze Ludmila V

    2010-08-01

    Full Text Available Abstract Background Filamentous fungi in the genus Aspergillus produce a variety of natural products, including aflatoxin, the most potent naturally occurring carcinogen known. Aflatoxin biosynthesis, one of the most highly characterized secondary metabolic pathways, offers a model system to study secondary metabolism in eukaryotes. To control or customize biosynthesis of natural products we must understand how secondary metabolism integrates into the overall cellular metabolic network. By applying a metabolomics approach we analyzed volatile compounds synthesized by Aspergillus parasiticus in an attempt to define the association of secondary metabolism with other metabolic and cellular processes. Results Volatile compounds were examined using solid phase microextraction - gas chromatography/mass spectrometry. In the wild type strain Aspergillus parasiticus SU-1, the largest group of volatiles included compounds derived from catabolism of branched chain amino acids (leucine, isoleucine, and valine; we also identified alcohols, esters, aldehydes, and lipid-derived volatiles. The number and quantity of the volatiles produced depended on media composition, time of incubation, and light-dark status. A block in aflatoxin biosynthesis or disruption of the global regulator veA affected the volatile profile. In addition to its multiple functions in secondary metabolism and development, VeA negatively regulated catabolism of branched chain amino acids and synthesis of ethanol at the transcriptional level thus playing a role in controlling carbon flow within the cell. Finally, we demonstrated that volatiles generated by a veA disruption mutant are part of the complex regulatory machinery that mediates the effects of VeA on asexual conidiation and sclerotia formation. Conclusions 1 Volatile profiling provides a rapid, effective, and powerful approach to identify changes in intracellular metabolic networks in filamentous fungi. 2 VeA coordinates the

  15. Fluorescent D-amino-acids reveal bi-cellular cell wall modifications important for Bdellovibrio bacteriovorus predation.

    Science.gov (United States)

    Kuru, Erkin; Lambert, Carey; Rittichier, Jonathan; Till, Rob; Ducret, Adrien; Derouaux, Adeline; Gray, Joe; Biboy, Jacob; Vollmer, Waldemar; VanNieuwenhze, Michael; Brun, Yves V; Sockett, R Elizabeth

    2017-12-01

    Modification of essential bacterial peptidoglycan (PG)-containing cell walls can lead to antibiotic resistance; for example, β-lactam resistance by L,D-transpeptidase activities. Predatory Bdellovibrio bacteriovorus are naturally antibacterial and combat infections by traversing, modifying and finally destroying walls of Gram-negative prey bacteria, modifying their own PG as they grow inside prey. Historically, these multi-enzymatic processes on two similar PG walls have proved challenging to elucidate. Here, with a PG-labelling approach utilizing timed pulses of multiple fluorescent D-amino acids, we illuminate dynamic changes that predator and prey walls go through during the different phases of bacteria:bacteria invasion. We show formation of a reinforced circular port-hole in the prey wall, L,D-transpeptidase Bd -mediated D-amino acid modifications strengthening prey PG during Bdellovibrio invasion, and a zonal mode of predator elongation. This process is followed by unconventional, multi-point and synchronous septation of the intracellular Bdellovibrio, accommodating odd- and even-numbered progeny formation by non-binary division.

  16. Functional group and stereochemical requirements for substrate binding by ghrelin O-acyltransferase revealed by unnatural amino acid incorporation.

    Science.gov (United States)

    Cleverdon, Elizabeth R; Davis, Tasha R; Hougland, James L

    2018-04-21

    Ghrelin is a small peptide hormone that undergoes a unique posttranslational modification, serine octanoylation, to play its physiological roles in processes including hunger signaling and glucose metabolism. Ghrelin O-acyltransferase (GOAT) catalyzes this posttranslational modification, which is essential for ghrelin to bind and activate its cognate GHS-R1a receptor. Inhibition of GOAT offers a potential avenue for modulating ghrelin signaling for therapeutic effect. Defining the molecular characteristics of ghrelin that lead to binding and recognition by GOAT will facilitate the development and optimization of GOAT inhibitors. We show that small peptide mimics of ghrelin substituted with 2,3-diaminopropanoic acid in place of the serine at the site of octanoylation act as submicromolar inhibitors of GOAT. Using these chemically modified analogs of desacyl ghrelin, we define key functional groups within the N-terminal sequence of ghrelin essential for binding to GOAT and determine GOAT's tolerance to backbone methylations and altered amino acid stereochemistry within ghrelin. Our study provides a structure-activity analysis of ghrelin binding to GOAT that expands upon activity-based investigations of ghrelin recognition and establishes a new class of potent substrate-mimetic GOAT inhibitors for further investigation and therapeutic interventions targeting ghrelin signaling. Copyright © 2018 Elsevier Inc. All rights reserved.

  17. Proteomic analysis of the intestinal adaptation response reveals altered expression of fatty acid binding proteins following massive small bowel resection.

    Science.gov (United States)

    Stephens, Andrew N; Pereira-Fantini, Prue M; Wilson, Guineva; Taylor, Russell G; Rainczuk, Adam; Meehan, Katie L; Sourial, Magdy; Fuller, Peter J; Stanton, Peter G; Robertson, David M; Bines, Julie E

    2010-03-05

    Intestinal adaptation in response to the loss of the small intestine is essential to restore enteral autonomy in patients who have undergone massive small bowel resection (MSBR). In a proportion of patients, intestinal function is not restored, resulting in chronic intestinal failure (IF). Early referral of such patients for transplant provides the best prognosis; however, the molecular mechanisms underlying intestinal adaptation remain elusive and there is currently no convenient marker to predict whether patients will develop IF. We have investigated the adaptation response in a well-characterized porcine model of intestinal adaptation. 2D DIGE analysis of ileal epithelium from piglets recovering from massive small bowel resection (MSBR) identified over 60 proteins that changed specifically in MSBR animals relative to nonoperational or sham-operated controls. Three fatty acid binding proteins (L-FABP, FABP-6, and I-FABP) showed changes in MSBR animals. The expression changes and localization of each FABP were validated by immunoblotting and immunohistochemical analysis. FABP expression changes in MSBR animals occurred concurrently with altered triglyceride and bile acid metabolism as well as weight gain. The observed FABP expression changes in the ileal epithelium occur as part of the intestinal adaptation response and could provide a clinically useful marker to evaluate adaptation following MSBR.

  18. Yeast and bacterial diversity along a transect in an acidic, As-Fe rich environment revealed by cultural approaches.

    Science.gov (United States)

    Delavat, François; Lett, Marie-Claire; Lièvremont, Didier

    2013-10-01

    Acid mine drainages (AMDs) are often thought to harbour low biodiversity, yet little is known about the diversity distribution along the drainages. Using culture-dependent approaches, the microbial diversity from the Carnoulès AMD sediment was investigated for the first time along a transect showing progressive environmental stringency decrease. In total, 20 bacterial genera were detected, highlighting a higher bacterial diversity than previously thought. Moreover, this approach led to the discovery of 16 yeast species, demonstrating for the first time the presence of this important phylogenetic group in this AMD. All in all, the location of the microbes along the transect helps to better understand their distribution in a pollution gradient. Copyright © 2013 Elsevier B.V. All rights reserved.

  19. Silencing of ABCC13 transporter in wheat reveals its involvement in grain development, phytic acid accumulation and lateral root formation.

    Science.gov (United States)

    Bhati, Kaushal Kumar; Alok, Anshu; Kumar, Anil; Kaur, Jagdeep; Tiwari, Siddharth; Pandey, Ajay Kumar

    2016-07-01

    Low phytic acid is a trait desired in cereal crops and can be achieved by manipulating the genes involved either in its biosynthesis or its transport in the vacuoles. Previously, we have demonstrated that the wheat TaABCC13 protein is a functional transporter, primarily involved in heavy metal tolerance, and a probable candidate gene to achieve low phytate wheat. In the current study, RNA silencing was used to knockdown the expression of TaABCC13 in order to evaluate its functional importance in wheat. Transgenic plants with significantly reduced TaABCC13 transcripts in either seeds or roots were selected for further studies. Homozygous RNAi lines K1B4 and K4G7 exhibited 34-22% reduction of the phytic acid content in the mature grains (T4 seeds). These transgenic lines were defective for spike development, as characterized by reduced grain filling and numbers of spikelets. The seeds of transgenic wheat had delayed germination, but the viability of the seedlings was unaffected. Interestingly, early emergence of lateral roots was observed in TaABCC13-silenced lines as compared to non-transgenic lines. In addition, these lines also had defects in metal uptake and development of lateral roots in the presence of cadmium stress. Our results suggest roles of TaABCC13 in lateral root initiation and enhanced sensitivity towards heavy metals. Taken together, these data demonstrate that wheat ABCC13 is functionally important for grain development and plays an important role during detoxification of heavy metals. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  20. The annual carbon budget for fen and forest in a wetland at Arctic treeline

    Energy Technology Data Exchange (ETDEWEB)

    Rouse, W. R. [McMaster Univ., School of Geography and Geology, Hamilton, ON (Canada); Bello, R. L.; D' Souza, A. [York Univ., Dept. of Geography, Toronto, ON (Canada); Griffis, T. J. [Minnesota Univ., Dept. of Soil, Water and Climate, St. Paul, MN (United States); LaFleur, P. M. [Trent Univ., Dept. of Geography, Peterborough, ON (Canada)

    2002-09-01

    This study of a wetland system at the Arctic treeline compares two carbon budget estimates, one derived from long-term growth rates of organic soil and the other based on shorter-term flux measurements. Result showed that while there was a small loss of carbon from the ecosystem in the case of tundra fen over a period of fifty-three years, the adjacent open subarctic forest showed large gains in atmospheric carbon dioxide during the same period. These longer-term data were supported by shorter-term flux measurements, which also showed carbon loss by the fen and carbon uptake by the forest. The shorter term data indicate that the carbon loss from the fen during this period was attributable to one particularly dry year. The different rates of carbon exchange appear to be controlled by two primary factors. The first is the enhanced development in the fen of a photosynthesis-inhibiting hummock-hollow landscape, while the second is related to warmer and drier average growing season conditions, which inhibit carbon dioxide uptake in the fen and enhances it in the forest. 24 refs., 4 tabs., 3 figs.

  1. BOREAS TF-10 NSA-Fen Tower Flux and Meteorological Data

    Science.gov (United States)

    McCaughey, J. Harry; Hall, Forrest G. (Editor); Huemmrich, Karl (Editor); Jelinski, Dennis E.

    2000-01-01

    The BOREAS TF-10 team collected tower flux and meteorological data at two sites, a fen and a young jack pine forest, near Thompson, Manitoba, Canada, as part of BOREAS. A preliminary data set was assembled in August 1993 while field testing the instrument packages, and at both sites data were collected from 15-Aug to 31-Aug. The main experimental period was in 1994, when continuous data were collected from 08-Apr to 23-Sep at the fen site. A very limited experiment was run in the spring/ summer of 1995, when the fen site tower was operated from 08-Apr to 14-Jun in support of a hydrology experiment in an adjoining feeder basin. Upon examination of the 1994 data set, it became clear that the behavior of the heat, water, and carbon dioxide fluxes throughout the whole growing season was an important scientific question, and that the 1994 data record was not sufficiently long to capture the character of the seasonal behavior of the fluxes. Thus, the fen site was operated in 1996 in order to collect data from spring melt to autumn freeze-up. Data were collected from 29-Apr to 05-Nov at the fen site. All variables are presented as 30-minute averages. The data are stored in tabular ASCII files.

  2. Integration of the Pokeweed miRNA and mRNA Transcriptomes Reveals Targeting of Jasmonic Acid-Responsive Genes

    Directory of Open Access Journals (Sweden)

    Kira C. M. Neller

    2018-05-01

    Full Text Available The American pokeweed plant, Phytolacca americana, displays broad-spectrum resistance to plant viruses and is a heavy metal hyperaccumulator. However, little is known about the regulation of biotic and abiotic stress responses in this non-model plant. To investigate the control of miRNAs in gene expression, we sequenced the small RNA transcriptome of pokeweed treated with jasmonic acid (JA, a hormone that mediates pathogen defense and stress tolerance. We predicted 145 miRNAs responsive to JA, most of which were unique to pokeweed. These miRNAs were low in abundance and condition-specific, with discrete expression change. Integration of paired mRNA-Seq expression data enabled us to identify correlated, novel JA-responsive targets that mediate hormone biosynthesis, signal transduction, and pathogen defense. The expression of approximately half the pairs was positively correlated, an uncommon finding that we functionally validated by mRNA cleavage. Importantly, we report that a pokeweed-specific miRNA targets the transcript of OPR3, novel evidence that a miRNA regulates a JA biosynthesis enzyme. This first large-scale small RNA study of a Phytolaccaceae family member shows that miRNA-mediated control is a significant component of the JA response, associated with widespread changes in expression of genes required for stress adaptation.

  3. Proteogenomic analysis reveals alternative splicing and translation as part of the abscisic acid response in Arabidopsis seedlings.

    Science.gov (United States)

    Zhu, Fu-Yuan; Chen, Mo-Xian; Ye, Neng-Hui; Shi, Lu; Ma, Kai-Long; Yang, Jing-Fang; Cao, Yun-Ying; Zhang, Youjun; Yoshida, Takuya; Fernie, Alisdair R; Fan, Guang-Yi; Wen, Bo; Zhou, Ruo; Liu, Tie-Yuan; Fan, Tao; Gao, Bei; Zhang, Di; Hao, Ge-Fei; Xiao, Shi; Liu, Ying-Gao; Zhang, Jianhua

    2017-08-01

    In eukaryotes, mechanisms such as alternative splicing (AS) and alternative translation initiation (ATI) contribute to organismal protein diversity. Specifically, splicing factors play crucial roles in responses to environment and development cues; however, the underlying mechanisms are not well investigated in plants. Here, we report the parallel employment of short-read RNA sequencing, single molecule long-read sequencing and proteomic identification to unravel AS isoforms and previously unannotated proteins in response to abscisic acid (ABA) treatment. Combining the data from the two sequencing methods, approximately 83.4% of intron-containing genes were alternatively spliced. Two AS types, which are referred to as alternative first exon (AFE) and alternative last exon (ALE), were more abundant than intron retention (IR); however, by contrast to AS events detected under normal conditions, differentially expressed AS isoforms were more likely to be translated. ABA extensively affects the AS pattern, indicated by the increasing number of non-conventional splicing sites. This work also identified thousands of unannotated peptides and proteins by ATI based on mass spectrometry and a virtual peptide library deduced from both strands of coding regions within the Arabidopsis genome. The results enhance our understanding of AS and alternative translation mechanisms under normal conditions, and in response to ABA treatment. © 2017 The Authors The Plant Journal © 2017 John Wiley & Sons Ltd.

  4. Transcriptome profiling and physiological studies reveal a major role for aromatic amino acids in mercury stress tolerance in rice seedlings.

    Directory of Open Access Journals (Sweden)

    Yun-An Chen

    Full Text Available Mercury (Hg is a serious environmental pollution threat to the planet. The accumulation of Hg in plants disrupts many cellular-level functions and inhibits growth and development, but the mechanism is not fully understood. To gain more insight into the cellular response to Hg, we performed a large-scale analysis of the rice transcriptome during Hg stress. Genes induced with short-term exposure represented functional categories of cell-wall formation, chemical detoxification, secondary metabolism, signal transduction and abiotic stress response. Moreover, Hg stress upregulated several genes involved in aromatic amino acids (Phe and Trp and increased the level of free Phe and Trp content. Exogenous application of Phe and Trp to rice roots enhanced tolerance to Hg and effectively reduced Hg-induced production of reactive oxygen species. Hg induced calcium accumulation and activated mitogen-activated protein kinase. Further characterization of the Hg-responsive genes we identified may be helpful for better understanding the mechanisms of Hg in plants.

  5. Ecological niche of Neanderthals from Spy Cave revealed by nitrogen isotopes of individual amino acids in collagen.

    Science.gov (United States)

    Naito, Yuichi I; Chikaraishi, Yoshito; Drucker, Dorothée G; Ohkouchi, Naohiko; Semal, Patrick; Wißing, Christoph; Bocherens, Hervé

    2016-04-01

    This study provides a refined view on the diet and ecological niche of Neanderthals. The traditional view is that Neanderthals obtained most of their dietary protein from terrestrial animals, especially from large herbivores that roamed the open landscapes. Evidence based on the conventional carbon and nitrogen isotopic composition of bulk collagen has supported this view, although recent findings based on plant remains in the tooth calculus, microwear analyses, and small game and marine animal remains from archaeological sites have raised some questions regarding this assumption. However, the lack of a protein source other than meat in the Neanderthal diet may be due to methodological difficulties in defining the isotopic composition of plants. Based on the nitrogen isotopic composition of glutamic acid and phenylalanine in collagen for Neanderthals from Spy Cave (Belgium), we show that i) there was an inter-individual dietary heterogeneity even within one archaeological site that has not been evident in bulk collagen isotopic compositions, ii) they occupied an ecological niche different from those of hyenas, and iii) they could rely on plants for up to ∼20% of their protein source. These results are consistent with the evidence found of plant consumption by the Spy Neanderthals, suggesting a broader subsistence strategy than previously considered. Copyright © 2016 Elsevier Ltd. All rights reserved.

  6. Transcriptome profiling and physiological studies reveal a major role for aromatic amino acids in mercury stress tolerance in rice seedlings.

    Science.gov (United States)

    Chen, Yun-An; Chi, Wen-Chang; Trinh, Ngoc Nam; Huang, Li-Yao; Chen, Ying-Chih; Cheng, Kai-Teng; Huang, Tsai-Lien; Lin, Chung-Yi; Huang, Hao-Jen

    2014-01-01

    Mercury (Hg) is a serious environmental pollution threat to the planet. The accumulation of Hg in plants disrupts many cellular-level functions and inhibits growth and development, but the mechanism is not fully understood. To gain more insight into the cellular response to Hg, we performed a large-scale analysis of the rice transcriptome during Hg stress. Genes induced with short-term exposure represented functional categories of cell-wall formation, chemical detoxification, secondary metabolism, signal transduction and abiotic stress response. Moreover, Hg stress upregulated several genes involved in aromatic amino acids (Phe and Trp) and increased the level of free Phe and Trp content. Exogenous application of Phe and Trp to rice roots enhanced tolerance to Hg and effectively reduced Hg-induced production of reactive oxygen species. Hg induced calcium accumulation and activated mitogen-activated protein kinase. Further characterization of the Hg-responsive genes we identified may be helpful for better understanding the mechanisms of Hg in plants.

  7. Metabolome analysis reveals the effect of carbon catabolite control on the poly(γ-glutamic acid) biosynthesis of Bacillus licheniformis ATCC 9945.

    Science.gov (United States)

    Mitsunaga, Hitoshi; Meissner, Lena; Palmen, Thomas; Bamba, Takeshi; Büchs, Jochen; Fukusaki, Eiichiro

    2016-04-01

    Poly(γ-glutamic acid) (PGA) is a polymer composed of L- and/or D-glutamic acids that is produced by Bacillus sp. Because the polymer has various features as water soluble, edible, non-toxic and so on, it has attracted attention as a candidate for many applications such as foods, cosmetics and so on. However, although it is well known that the intracellular metabolism of Bacillus sp. is mainly regulated by catabolite control, the effect of the catabolite control on the PGA producing Bacillus sp. is largely unknown. This study is the first report of metabolome analysis on the PGA producing Bacillus sp. that reveals the effect of carbon catabolite control on the metabolism of PGA producing Bacillus licheniformis ATCC 9945. Results showed that the cells cultivated in glycerol-containing medium showed higher PGA production than the cells in glucose-containing medium. Furthermore, metabolome analysis revealed that the activators of CcpA and CodY, global regulatory proteins of the intracellular metabolism, accumulated in the cells cultivated in glycerol-containing and glucose-containing medium, respectively, with CodY apparently inhibiting PGA production. Moreover, the cells seemed to produce glutamate from citrate and ammonium using glutamine synthetase/glutamate synthase. Pulsed addition of di-ammonium hydrogen citrate, as suggested by the metabolome result, was able to achieve the highest value so far for PGA production in B. licheniformis. Copyright © 2015 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

  8. Chemical Genetic Analysis and Functional Characterization of Staphylococcal Wall Teichoic Acid 2-Epimerases Reveals Unconventional Antibiotic Drug Targets

    Energy Technology Data Exchange (ETDEWEB)

    Mann, Paul A.; Müller, Anna; Wolff, Kerstin A.; Fischmann, Thierry; Wang, Hao; Reed, Patricia; Hou, Yan; Li, Wenjin; Müller, Christa E.; Xiao, Jianying; Murgolo, Nicholas; Sher, Xinwei; Mayhood, Todd; Sheth, Payal R.; Mirza, Asra; Labroli, Marc; Xiao, Li; McCoy, Mark; Gill, Charles J.; Pinho, Mariana G.; Schneider, Tanja; Roemer, Terry (Merck); (Bonn); (FCT/UNL)

    2016-05-04

    Here we describe a chemical biology strategy performed in Staphylococcus aureus and Staphylococcus epidermidis to identify MnaA, a 2-epimerase that we demonstrate interconverts UDP-GlcNAc and UDP-ManNAc to modulate substrate levels of TarO and TarA wall teichoic acid (WTA) biosynthesis enzymes. Genetic inactivation of mnaA results in complete loss of WTA and dramatic in vitro β-lactam hypersensitivity in methicillin-resistant S. aureus (MRSA) and S. epidermidis (MRSE). Likewise, the β-lactam antibiotic imipenem exhibits restored bactericidal activity against mnaA mutants in vitro and concomitant efficacy against 2-epimerase defective strains in a mouse thigh model of MRSA and MRSE infection. Interestingly, whereas MnaA serves as the sole 2-epimerase required for WTA biosynthesis in S. epidermidis, MnaA and Cap5P provide compensatory WTA functional roles in S. aureus. We also demonstrate that MnaA and other enzymes of WTA biosynthesis are required for biofilm formation in MRSA and MRSE. We further determine the 1.9Å crystal structure of S. aureus MnaA and identify critical residues for enzymatic dimerization, stability, and substrate binding. Finally, the natural product antibiotic tunicamycin is shown to physically bind MnaA and Cap5P and inhibit 2-epimerase activity, demonstrating that it inhibits a previously unanticipated step in WTA biosynthesis. In summary, MnaA serves as a new Staphylococcal antibiotic target with cognate inhibitors predicted to possess dual therapeutic benefit: as combination agents to restore β-lactam efficacy against MRSA and MRSE and as non-bioactive prophylactic agents to prevent Staphylococcal biofilm formation.

  9. Inflammatory Effects of the Plant Protection Product Stifenia (FEN560 on Vertebrates

    Directory of Open Access Journals (Sweden)

    Olivier Lamotte

    2017-04-01

    Full Text Available Plant defense stimulators (PDSs rely on the activation of plant innate immunity in order to protect crops against various pests. These molecules are thought to be a safer alternative to classical plant protection products. Given that innate immune systems share common features in plants and vertebrates, PDS can potentially cross-react with innate immunity of non-target organisms. To test this hypothesis, we studied effects of the commercial PDS Stifenia (FEN560, which is composed of crushed fenugreek seeds. We tested various concentrations of Stifenia (0.03–1 mg mL−1 on human peripheral blood mononuclear cells and checked, 20 h later, cell metabolic activity (MA using XTT assay, cell death by flow cytometry analysis, and IL-1β inflammatory cytokine released in the culture medium using ELISA. Stifenia induced a general decrease of the cell MA, which was concomitant with a dose-dependent release of IL-1β. Our results highlight the activation of human immune cells. The inflammatory effect of Stifenia was partially inhibited by pan-caspase inhibitor. Accordingly, Stifenia induced the release of p20 caspase-1 fragment into the culture medium suggesting the involvement of the NLRP3 inflammasome. Furthermore, we observed that Stifenia can induce cell death. We also tested the effect of Stifenia on Zebrafish larvae. After 24 h of exposure, Stifenia induced a dose-dependent IL-1β and TNFα gene expression. The human-cell-based approach developed in this work revealed a high sensitivity concerning inflammatory properties of a plant protection product. These tests could be routinely used to screen the potential adverse effects of this type of compounds. Finally, our results suggest a potential danger of using extensively certain PDS for crop protection.

  10. Examining the peat-accumulating potential of fen vegetation in the context of fed restoration of harvested peatlands

    Energy Technology Data Exchange (ETDEWEB)

    Graf, M.; Rochefort, L. [Laval Univ., Quebec City, PQ (Canada). Dept. de Phytologie, Peatland Ecology and Research Group

    2009-07-01

    The return of peat-accumulating function is an important long-term goal in peatland restoration. However, researchers do not yet know which vegetation groups increase the ability of ecosystems to accumulate peat in fens. This study assessed the decomposition rates of 3 vegetation species typical to undisturbed fen regions, and 3 species that spontaneously colonize harvested fens. All species were incubated in a harvest fen restoration site as well as at an undisturbed fen in order to compare decomposition rates according to different environmental conditions. The study showed that the average exponential decay coefficient for all species was higher at the harvested fen site. The decay coefficient varied only slightly between undisturbed and harvested fens, despite wide variations in hydrological conditions. Litter type had the most significant impact on decomposition rates. Annual primary production of the species was also measured in order to estimate the peat accumulating capacity of each species. Results showed that Scirpus cyperinus primary annual production rates were 3 times higher than the other studied species. It was concluded that the harvested fen sites have a higher peat-accumulating potential than undisturbed fens. 60 refs., 2 tabs., 2 figs.

  11. Proteomic Analysis Revealed the Important Role of Vimentin in Human Cervical Carcinoma HeLa Cells Treated With Gambogic Acid*

    Science.gov (United States)

    Yue, Qingxi; Feng, Lixing; Cao, Biyin; Liu, Miao; Zhang, Dongmei; Wu, Wanying; Jiang, Baohong; Yang, Min; Liu, Xuan; Guo, Dean

    2016-01-01

    Gambogic acid (GA) is an anticancer agent in phase IIb clinical trial in China. In HeLa cells, GA inhibited cell proliferation, induced cell cycle arrest at G2/M phase and apoptosis, as showed by results of MTT assay and flow cytometric analysis. Possible target-related proteins of GA were searched using comparative proteomic analysis (2-DE) and nine proteins at early (3 h) stage together with nine proteins at late (24 h) stage were found. Vimentin was the only target-related protein found at both early and late stage. Results of both 2-DE analysis and Western blotting assay suggested cleavage of vimentin induced by GA. MS/MS analysis of cleaved vimentin peptides indicated possible cleavage sites of vimentin at or near ser51 and glu425. Results of targeted proteomic analysis showed that GA induced change in phosphorylation state of the vimentin head domain (aa51–64). Caspase inhibitors could not abrogate GA-induced cleavage of vimentin. Over-expression of vimentin ameliorated cytotoxicity of GA in HeLa cells. The GA-activated signal transduction, from p38 MAPK, heat shock protein 27 (HSP27), vimentin, dysfunction of cytoskeleton, to cell death, was predicted and then confirmed. Results of animal study showed that GA treatment inhibited tumor growth in HeLa tumor-bearing mice and cleavage of vimentin could be observed in tumor xenografts of GA-treated animals. Results of immunohistochemical staining also showed down-regulated vimentin level in tumor xenografts of GA-treated animals. Furthermore, compared with cytotoxicity of GA in HeLa cells, cytotoxicity of GA in MCF-7 cells with low level of vimentin was weaker whereas cytotoxicity of GA in MG-63 cells with high level of vimentin was stronger. These results indicated the important role of vimentin in the cytotoxicity of GA. The effects of GA on vimentin and other epithelial-to-mesenchymal transition (EMT) markers provided suggestion for better usage of GA in clinic. PMID:26499837

  12. Compostos fenólicos totais e taninos condensados em frutas nativas do cerrado

    Directory of Open Access Journals (Sweden)

    Wesley Silveira Rocha

    2011-12-01

    Full Text Available As frutas nativas do cerrado têm despertado ultimamente interesse crescente, devido às suas propriedades nutricionais e funcionais aliadas ao potencial para agregar valor e conservar a biodiversidade deste bioma. Muitos compostos fenólicos apresentam capacidade antioxidante de neutralizar a atividade de radicais livres gerados no organismo, que estão associados a diversas doenças crônico-degenerativas. O objetivo deste trabalho foi avaliar a eficiência de três soluções extratoras (acetona a 70 %, etanol a 95 % e metanol a 99,8 % e determinar os teores de compostos fenólicos em 10 espécies de frutas nativas do cerrado, utilizando o método de Folin-Ciocalteou para compostos fenólicos totais e o método da vanilina para taninos condensados. A acetona a 70 % mostrou-se como o melhor solvente extrator de compostos fenólicos totais e taninos condensados em frutos de Pouteria gardneriana, Eugenia dysenterica, E. klostzchiana, E. punicifolia, Plinia edulis, Campomanesia sp., fenólicos totais de Brosimium gaudichaudii e taninos condensados de Jaracatia spinosa. O etanol a 95 % foi mais eficiente na extração de fenólicos totais de Jaracatia spinosa e taninos condensados de Brosimium gaudichaudii; o metanol a 99,8 % foi mais eficiente na extração de taninos condensados de Eugenia dysenterica. Os teores de compostos fenólicos totais variaram entre 90 e 327 mg de ácido gálico equivalente por 100g de polpa para as espécies E. dysenterica e E. punicifolia, respectivamente. Os teores de taninos condensados variaram entre 4 e 291 mg de catequina equivalente por 100 g de polpa para as espécies E. dysenterica e E. calcyna, respectivamente. As espécies de frutas do cerrado, avaliadas neste estudo, podem ser consideradas boas fontes de compostos fenólicos totais, sendo que a natureza específica dos diferentes tipos deve ser avaliada em estudos futuros.

  13. Literatura expandida: el fenómeno fanfiction en español

    OpenAIRE

    Sanz Martínez, Sandra

    2017-01-01

    En este trabajo se pretende abordar el estudio del llamado “fenómeno fanfiction”, un fenómeno que ha sacudido internet en las últimas décadas y que supone una nueva forma de creación de literatura. La creación de fanfiction supone la realización de una obra, normalmente narrativa, cuyo contenido contiene aspectos de una obra de ficción publicada, siempre sin ánimo de lucro. Departamento de Literatura Española y Teoría de la Literatura y Literatura Comparada Grado en Español: Lengua y...

  14. E-sports: um fenómeno da cultura digital contemporânea

    OpenAIRE

    Saraiva, Pedro André Cardoso

    2013-01-01

    Mestrado em Comunicação, Cultura e Tecnologias de Informação A competição entre dois jogadores está na génese dos jogos digitais e é esse o fator que está no centro deste trabalho, que explora o fenómeno do desporto eletrónico, os e-sports. Este conceito representa a prática competitiva e profissionalmente organizada nos videojogos. Situado conceptualmente entre o gaming e o desporto, os e-sports apresentam-se como um fenómeno da cultura digital contemporânea, partic...

  15. Modelado lingüístico de fenómenos complejos

    OpenAIRE

    Álvarez Álvarez, Alberto

    2012-01-01

    Actualmente, es posible adquirir y almacenar grandes volúmenes de datos sobre diferentes fenómenos complejos en muchas áreas importantes. Con el fin de ser útil, esta información debe ser explicada de la manera más comprensible posible, incluyendo los conocimientos previos disponibles sobre el fenómeno que se estudia. Estos objetivos sólo pueden lograrse mediante el uso de lenguaje natural, especialmente si la información final va a ser utilizada por personas no expertas. Por lo tanto, e...

  16. El Fenómeno de Consumo y el Consumo en Marketing

    Directory of Open Access Journals (Sweden)

    Dagoberto Páramo Morales

    2004-01-01

    Full Text Available En este artículo se presentan las principales características que tipifican el fenómeno de consumo en las sociedades contemporáneas. Para lograrlo, primero se revisan algunas aproximaciones conceptuales del consumo, visto como fenómeno social, asociándolo con el simbolismo de consumo, los rituales, las posesiones y el materialismo como motores propulsores de la concepción y práctica del marketing de hoy.

  17. Single-Amino Acid Modifications Reveal Additional Controls on the Proton Pathway of [FeFe]-Hydrogenase

    Energy Technology Data Exchange (ETDEWEB)

    Cornish, Adam J.; Ginovska, Bojana; Thelen, Adam; da Silva, Julio C. S.; Soares, Thereza A.; Raugei, Simone; Dupuis, Michel; Shaw, Wendy J.; Hegg, Eric L.

    2016-06-07

    The proton pathway of [FeFe]-hydrogenase is essential for enzymatic H2 production and oxidation and is composed of four residues and a modeled water molecule. Recently, a computational analysis of this pathway revealed that the solvent-exposed residue of the pathway (Glu282) could form hydrogen bonds to two residues outside of the pathway (Arg286 and Ser320), implicating that these residues could function in regulating proton transfer. Substituting Arg286 with leucine eliminates hydrogen bonding with Glu282 and results in a 2.5-fold enhancement in H2 production activity, suggesting that Arg286 serves an important role in controlling the rate of proton delivery. In contrast, substitution of Ser320 with alanine reduces the rate approximately 5-fold, implying that it either acts as a member of the pathway or influences Glu282 to enable proton transfer. Interestingly, QM/MM and molecular dynamics calculations indicate that Ser320 does not play an electronic or structural role. QM calculations also estimate that including Ser320 in the pathway does not significantly change the barrier to proton movement, providing further support for its role as a member of the proton pathway. While further studies are needed to quantify the role of Ser320, collectively, these data provide evidence that the enzyme scaffold plays a significant role in modulating the activity of the enzyme, demonstrating that the rate of intraprotein proton transfer can be accelerated, particularly in a non-biological context. This work was supported by the DOE Great Lakes Bioenergy Research Center (DOE BER Office of Science, DE-FC02-07ER64494). In addition, support from the DOE Office of Science Early Career Research Program through the Office of Basic Energy Sciences (WJS, BGP, SR) is gratefully acknowledged. Computational resources were provided at W. R. Wiley Environmental Molecular Science Laboratory (EMSL), a national scientific user facility sponsored by the Department of Energy’s Office of

  18. Characterization of VuMATE1 expression in response to iron nutrition and aluminum stress reveals adaptation of rice bean (Vigna umbellata to acid soils through cis regulation

    Directory of Open Access Journals (Sweden)

    Meiya eLiu

    2016-04-01

    Full Text Available Rice bean (Vigna umbellata VuMATE1 appears to be constitutively expressed at vascular system but root apex, and Al stress extends its expression to root apex. Whether VuMATE1 participates in both Al tolerance and Fe nutrition, and how VuMATE1 expression is regulated is of great interest. In this study, the role of VuMATE1 in Fe nutrition was characterized through in planta complementation assays. The transcriptional regulation of VuMATE1 was investigated through promoter analysis and promoter-GUS reporter assays. The results showed that the expression of VuMATE1 was regulated by Al stress but not Fe status. Complementation of frd3-1 with VuMATE1 under VuMATE1 promoter could not restore phenotype, but restored with 35SCaMV promoter. Immunostaining of VuMATE1 revealed abnormal localization of VuMATE1 in vasculature. In planta GUS reporter assay identified Al-responsive cis-acting elements resided between -1228 and -574 bp. Promoter analysis revealed several cis-acting elements, but transcription is not simply regulated by one of these elements. We demonstrated that cis regulation of VuMATE1 expression is involved in Al tolerance mechanism, while not involved in Fe nutrition. These results reveal the evolution of VuMATE1 expression for better adaptation of rice bean to acidic soils where Al stress imposed but Fe deficiency pressure released.

  19. Vegetation of high-altitude fens and restio marshlands of the Hottentots Holland Mountains, Western Cape, South Africa

    Directory of Open Access Journals (Sweden)

    E. J. J. Sieben

    2004-09-01

    Full Text Available Seepages occurring at high altitudes in the Hottentots Holland Mountains (HHM (Western Cape Province. South Africa were subject to a phytosociological survey. Relevé sampling method and classification procedures of the floristic-sociological (Braun-Blanquet approach as well as numerical data analyses (numerical classification and ordination were used to reveal syn- taxonomic patterns and characterize the position of the syntaxa along major environmental gradients. Nine plant communities were recognized, three of which were classified as associations, following formal syntaxonomic and nomenclatural rules of the floristic-sociological approach Most of the studied mire communities were dominated by low-growing clonal restios (Restionaceae. whereas some consisted of other types of graminoids. The most important species determining the structure (and function of the mire communities on sandstones of the HHM include restios Anthochortus crinalis, Chondropetalum deustum.C. mucronatum, Elegia intermedia. E. thyrsifera. Restio subtilis. R. purpurascens. cyperoids Epischoenus villosus. Ficinia argy-ropa, grasses Ehrharta setacea subsp. setacea. Pentameris hirtiglumis as well as shrubs Berzelia squarrosa. Cliffortia tricuspi- data. Erica intenallaris and Grubbia rosmarinifolia. Protea lacticolor and Restio perplexus dominate a rare shale band seep­age community. There are two major groups of communities—the fens (dominated by carpets of Anthochortus crinalis and other low-growing species and the restio marshlands (mosaics of low tussocks of Restio subtilis and tall Chondropetalum mucrona­tum. The degree of soil (and water minerotrophy was found to be the most important differentiating feature between the mire (fen and restio marshland communities studied. The soils in the centre of mires were found to have high contents of peat and showed very little influence from the underlying sandstone. The soils along the mire margins had a greater admixture of

  20. Transcriptome and membrane fatty acid analyses reveal different strategies for responding to permeating and non-permeating solutes in the bacterium Sphingomonas wittichii

    Directory of Open Access Journals (Sweden)

    Johnson David R

    2011-11-01

    opposite effect and decreased after perturbation with PEG8000. Conclusions A combination of growth assays, transcriptome profiling, and membrane fatty acid analyses revealed that permeating and non-permeating solutes trigger different adaptive responses in strain RW1, suggesting these solutes affect cells in fundamentally different ways. Future work is now needed that connects these responses with the responses observed in more realistic scenarios of soil desiccation.

  1. Rehabilitation of acidified and eutrophied fens in The Netherlands : Effects of hydrologic manipulation and liming

    NARCIS (Netherlands)

    Beltman, B.; Broek, T. van den; Barendregt, A.; Bootsma, M.C.; Grootjans, A.P.

    Mosaic fen communities with many rare plant species were outcompeted by fast-growing bryophyte stands (Sphagnum flexuosum/Sphagnum fallax and Polytrichum commune). Eutrophication and acidification were the main causes. Management experiments were carried out to set back this succession by restoring

  2. Prospects of fen restoration in relation to changing land use—An example from central Poland

    NARCIS (Netherlands)

    Klimkowska, A.; Dzierza, P.; Grootjans, A.P.; Kotowski, W.; Diggelen, R.

    2010-01-01

    We carried out an eco-hydrological analysis to evaluate the most important effects of land use changes on the hydrological functioning of a fen system in Poland. We measured water levels (hydraulic heads) and water flow along a transect through the study area and also analysed land use changes using

  3. Prospects of fen restoration in relation to changing land use-An example from central Poland

    NARCIS (Netherlands)

    Klimkowska, Agata; Dzierża, Paulina; Grootjans, Ab P.; Kotowski, Wiktor; Diggelen, Rudy Van

    2010-01-01

    We carried out an eco-hydrological analysis to evaluate the most important effects of land use changes on the hydrological functioning of a fen system in Poland. We measured water levels (hydraulic heads) and water flow along a transect through the study area and also analysed land use changes using

  4. Phase Transformations and Phase Equilibria in the Fe-N System at Temperatures below 573 K

    DEFF Research Database (Denmark)

    Malinov, S.; Böttger, A.J.; Mittemeijer, E.J.

    2001-01-01

    The phase transformations of homogeneous Fe-N alloys of nitrogen contents from 10 to 26 at. pct were investigated by means of X-ray diffraction analysis upon aging in the temperature range from 373 to 473 K. It was found that precipitation of alpha double prime-Fe16N2 below 443 K does not only oc...

  5. Diferentes Abordagens dos Fenômenos Subjetivos na Obra de B. F. Skinner

    Directory of Open Access Journals (Sweden)

    Henrique Mesquita Pompermaier

    2014-08-01

    Full Text Available Como a análise do comportamento aborda os fenômenos subjetivos? Seria a teoria de eventos privados a única maneira? Guiado por essas questões, o presente trabalho busca apresentar a abordagem dos fenômenos subjetivos na obra de B. F. Skinner, indicando não apenas a teoria de eventos privados, mas também a possibilidade de abordagens alternativas a essa temática, sem referência à privacidade, por exemplo, por meio da magnitude das ações envolvidas nos fenômenos, níveis (aberto e encoberto do comportamento e conceitos disposicionais. Indica-se ainda uma significativa diferença de ênfase na teoria de eventos privados ao longo da obra skinneriana. Por fim, conduz-se uma discussão sobre o papel da teoria de eventos privados na análise do comportamento para a abordagem dos fenômenos subjetivos.

  6. Effects of Reduced and Oxidised Nitrogen on Rich-Fen Mosses: a 4-Year Field Experiment

    NARCIS (Netherlands)

    Paulissen, Maurice P.C.P.; Bobbink, Roland; Robat, Sandra A.; Verhoeven, Jos T.A.

    2016-01-01

    Dutch fens, subjected to high nitrogen (N) deposition levels with reduced N (NHy) highly dominating over oxidised N (NOx), have since the second half of the past century seen a significant decline of Scorpidium and other characteristic brown moss species, while several Sphagnum species have

  7. Formation dynamics of FeN thin films on Cu(100)

    KAUST Repository

    Heryadi, Dodi; Schwingenschlö gl, Udo

    2012-01-01

    To investigate the structural and magnetic properties of thin films of FeN we have performed ab initio molecular dynamics simulations of their formation on Cu(100) substrates. The iron nitride layers exhibit a p4gm(2 × 2) reconstruction and order

  8. Una revisión del fenómeno de aislamiento magnético

    Directory of Open Access Journals (Sweden)

    Zósimo Arévalo Velosa

    2007-09-01

    Full Text Available Los dispositivos de alta energía son diseñados para que funcionen con campos eléctricos y magnéticos extrema-damente altos. Debido a esto, dichos dispositivos presentan fenómenos y comportamientos no lineales, como el aislamiento magnético que altera el transporte de los electrones. La no linealidad ha obligado a analizar y revisar desde el punto de vista matemático las condiciones de frontera y las soluciones del problema. El objetivo de este trabajo es exponer el tema a un nivel que facilite su difusión entre la comunidad académica no familiarizada con el mismo. Para ello, el trabajo presenta una descripción de los fenómenos que se generan cuando hay campos eléctricos y magnéticos muy altos, tomando el caso de un diodo plano al vacío, así como las ecuaciones que modelan el fenómeno de aislamiento magnético; también demuestra la existencia de las soluciones y encuentra las positivas en base a los métodos de solución superior e inferior para problemas de valor de frontera, y pro-porciona algunos ejemplos de aplicación del fenómeno de aislamiento magnético.

  9. Short-Term Summer Inundation as a Measure to Counteract Acidification in Rich Fens

    NARCIS (Netherlands)

    Mettrop, I.S.; Cusell, C.; Kooijman, A.M.; Lamers, L.P.M.

    2015-01-01

    In regions with intensive agriculture, water level fluctuation in wetlands has generally become constricted within narrow limits. Water authorities are, however, considering the re-establishment of fluctuating water levels as a management tool in biodiverse, base-rich fens (‘rich fens’). This

  10. Partitioning of habitat effects casts light on the decline of the fen orchid, Liparis loeselii

    DEFF Research Database (Denmark)

    Andersen, Dagmar Kappel; Ejrnæs, Rasmus; Minter, Martine Olesen

    2015-01-01

    Liparis loeselii is a rare and declining orchid species restricted to rich fens in the northern hemisphere. Suggested reasons for the decline are habitat destruction, eutrophication, altered hydrology and scrub encroachment after termination of traditional management such as grazing and hay making...

  11. The effect of habitat fragmentation and abiotic factors on fen plant occurrence

    NARCIS (Netherlands)

    Soomers, H.; Karssenberg, D.J.; Verhoeven, J.T.A.; Verweij, P.A.; Wassen, M.J.

    2013-01-01

    Human landscape modification has led to habitat fragmentation for many species. Habitat fragmentation, leading to isolation, decrease in patch size and increased edge effect, is observed in fen ecosystems that comprise many endangered plant species. However, until now it has remained unclear

  12. Human FEN1 Expression and Solubility Patterson in DNA Replication and Repair

    National Research Council Canada - National Science Library

    Carrier, Richard

    1999-01-01

    .... I show that human FEN1 mRNA and protein levels increase in a cell cycle-dependent manner, with peak mRNA and protein levels attained coincident with S phase DNA replication in both primary and transformed cells...

  13. Response of anaerobic carbon cycling to water table manipulation in an Alaskan rich fen

    Science.gov (United States)

    E.S. Kane; M.R. Chivers; M.S. Turetsky; C.C. Treat; D.G. Petersen; M. Waldrop; J.W. Harden; A.D. McGuire

    2013-01-01

    To test the effects of altered hydrology on organic soil decomposition, we investigated CO2 and CH4 production potential of rich-fen peat (mean surface pH = 6.3) collected from a field water table manipulation experiment including control, raised and lowered water table treatments. Mean anaerobic CO2...

  14. BOREAS TGB-1/TGB-3 CH4 Chamber Flux Data over the NSA Fen

    Science.gov (United States)

    Bubier, Jill L.; Moore, Tim R.; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor)

    2000-01-01

    The BOREAS TGB-3 team collected methane (CH4) chamber flux measurements at the NSA fen site during May-September 1994 and June-October 1996. Gas samples were extracted approximately every 7 days from chambers and analyzed at the NSA lab facility. The data are provided in tabular ASCII files.

  15. Identities among actin-encoding cDNAs of the Nile tilapia (Oreochromis niloticus and other eukaryote species revealed by nucleotide and amino acid sequence analyses

    Directory of Open Access Journals (Sweden)

    Andréia B. Poletto

    2008-01-01

    Full Text Available Actin-encoding cDNAs of Nile tilapia (Oreochromis niloticus were isolated by RT-PCR using total RNA samples of different tissues and further characterized by nucleotide sequencing and in silico amino acid (aa sequence analysis. Comparisons among the actin gene sequences of O. niloticus and those of other species evidenced that the isolated genes present a high similarity to other fish and other vertebrate actin genes. The highest nucleotide resemblance was observed between O. niloticus and O. mossambicus a-actin and b-actin genes. Analysis of the predicted aa sequences revealed two distinct types of cytoplasmic actins, one cardiac muscle actin type and one skeletal muscle actin type that were expressed in different tissues of Nile tilapia. The evolutionary relationships between the Nile tilapia actin genes and diverse other organisms is discussed.

  16. Filtering fens: Mechanisms explaining phosphorus-limited hotspots of biodiversity in wetlands adjacent to heavily fertilized areas

    NARCIS (Netherlands)

    Cusell, C.; Kooijman, A.; Fernandez, F.; van Wirdum, G.; Geurts, J.J.M.; van Loon, E.E.; Kalbitz, K.; Lamers, L.P.M.

    2014-01-01

    The conservation of biodiverse wetland vegetation, including that of rich fens, has a high priority at a global scale. Although P-eutrophication may strongly decrease biodiversity in rich fens, some well-developed habitats do still survive in highly fertilized regions due to nutrient filtering

  17. Changing Land Use: The Fens of England. A Case Study in Land Reclamation [And] Student Work Book.

    Science.gov (United States)

    Laws, Kevin

    A social studies unit and student workbook explore changes in land use that have occurred in the Fenlands of England since the time it was first inhabited. Fens are lowlying land which is partially or completely covered with water. The English Fens are located on the eastern side of the British Isles and cover a total area of about 2,000 square…

  18. Comparisons of soil nitrogen mass balances for an ombrotrophic bog and a minerotrophic fen in northern Minnesota

    Science.gov (United States)

    Brian H. Hill; Terri M. Jicha; LaRae L.P. Lehto; Colleen M. Elonen; Stephen D. Sebestyen; Randy Kolka

    2016-01-01

    Wecompared nitrogen (N) storage and flux in soils froman ombrotrophic bogwith that of a minerotrophic fen to quantify the differences in N cycling between these two peatlands types in northernMinnesota (USA). Precipitation, atmospheric deposition, and bog and fen outflowswere analyzed for nitrogen species. Upland and peatland soil sampleswere analyzed for N content,...

  19. A rapid NMR-based method for discrimination of strain-specific cell wall teichoic acid structures reveals a third backbone type in Lactobacillus plantarum.

    Science.gov (United States)

    Tomita, Satoru; Tanaka, Naoto; Okada, Sanae

    2017-03-01

    The lactic acid bacterium Lactobacillus plantarum is capable of producing strain-specific structures of cell wall teichoic acid (WTA), an anionic polysaccharide found in the Gram-positive bacterial cell wall. In this study, we established a rapid, NMR-based procedure to discriminate WTA structures in this species, and applied it to 94 strains of L. plantarum. Six previously reported glycerol- and ribitol-containing WTA subtypes were successfully identified from 78 strains, suggesting that these were the dominant structures. However, the level of structural variety differed markedly among bacterial sources, possibly reflecting differences in strain-level microbial diversity. WTAs from eight strains were not identified based on NMR spectra and were classified into three groups. Structural analysis of a partial degradation product of an unidentified WTA produced by strain TUA 1496L revealed that the WTA was 1-O-β-d-glucosylglycerol. Two-dimensional NMR analysis of the polymer structure showed phosphodiester bonds between C-3 and C-6 of the glycerol and glucose residues, suggesting a polymer structure of 3,6΄-linked poly(1-O-β-d-glucosyl-sn-glycerol phosphate). This is the third WTA backbone structure in L. plantarum, following 3,6΄-linked poly(1-O-α-d-glucosyl-sn-glycerol phosphate) and 1,5-linked poly(ribitol phosphate). © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  20. MALDI Mass Spectrometry Imaging of Lipids and Gene Expression Reveals Differences in Fatty Acid Metabolism between Follicular Compartments in Porcine Ovaries

    Directory of Open Access Journals (Sweden)

    Svetlana Uzbekova

    2015-03-01

    Full Text Available In mammals, oocytes develop inside the ovarian follicles; this process is strongly supported by the surrounding follicular environment consisting of cumulus, granulosa and theca cells, and follicular fluid. In the antral follicle, the final stages of oogenesis require large amounts of energy that is produced by follicular cells from substrates including glucose, amino acids and fatty acids (FAs. Since lipid metabolism plays an important role in acquiring oocyte developmental competence, the aim of this study was to investigate site-specificity of lipid metabolism in ovaries by comparing lipid profiles and expression of FA metabolism-related genes in different ovarian compartments. Using MALDI Mass Spectrometry Imaging, images of porcine ovary sections were reconstructed from lipid ion signals for the first time. Cluster analysis of ion spectra revealed differences in spatial distribution of lipid species among ovarian compartments, notably between the follicles and interstitial tissue. Inside the follicles analysis differentiated follicular fluid, granulosa, theca and the oocyte-cumulus complex. Moreover, by transcript quantification using real time PCR, we showed that expression of five key genes in FA metabolism significantly varied between somatic follicular cells (theca, granulosa and cumulus and the oocyte. In conclusion, lipid metabolism differs between ovarian and follicular compartments.

  1. Structure-Function Analyses of a Caffeic Acid O-Methyltransferase from Perennial Ryegrass Reveal the Molecular Basis for Substrate Preference[W][OA

    Science.gov (United States)

    Louie, Gordon V.; Bowman, Marianne E.; Tu, Yi; Mouradov, Aidyn; Spangenberg, German; Noel, Joseph P.

    2010-01-01

    Lignin forms from the polymerization of phenylpropanoid-derived building blocks (the monolignols), whose modification through hydroxylation and O-methylation modulates the chemical and physical properties of the lignin polymer. The enzyme caffeic acid O-methyltransferase (COMT) is central to lignin biosynthesis. It is often targeted in attempts to engineer the lignin composition of transgenic plants for improved forage digestibility, pulping efficiency, or utility in biofuel production. Despite intensive investigation, the structural determinants of the regiospecificity and substrate selectivity of COMT remain poorly defined. Reported here are x-ray crystallographic structures of perennial ryegrass (Lolium perenne) COMT (Lp OMT1) in open conformational state, apo- and holoenzyme forms and, most significantly, in a closed conformational state complexed with the products S-adenosyl-l-homocysteine and sinapaldehyde. The product-bound complex reveals the post-methyl-transfer organization of COMT’s catalytic groups with reactant molecules and the fully formed phenolic-ligand binding site. The core scaffold of the phenolic ligand forges a hydrogen-bonding network involving the 4-hydroxy group that anchors the aromatic ring and thereby permits only metahydroxyl groups to be positioned for transmethylation. While distal from the site of transmethylation, the propanoid tail substituent governs the kinetic preference of ryegrass COMT for aldehydes over alcohols and acids due to a single hydrogen bond donor for the C9 oxygenated moiety dictating the preference for an aldehyde. PMID:21177481

  2. Structure-function analyses of a caffeic acid O-methyltransferase from perennial ryegrass reveal the molecular basis for substrate preference.

    Science.gov (United States)

    Louie, Gordon V; Bowman, Marianne E; Tu, Yi; Mouradov, Aidyn; Spangenberg, German; Noel, Joseph P

    2010-12-01

    Lignin forms from the polymerization of phenylpropanoid-derived building blocks (the monolignols), whose modification through hydroxylation and O-methylation modulates the chemical and physical properties of the lignin polymer. The enzyme caffeic acid O-methyltransferase (COMT) is central to lignin biosynthesis. It is often targeted in attempts to engineer the lignin composition of transgenic plants for improved forage digestibility, pulping efficiency, or utility in biofuel production. Despite intensive investigation, the structural determinants of the regiospecificity and substrate selectivity of COMT remain poorly defined. Reported here are x-ray crystallographic structures of perennial ryegrass (Lolium perenne) COMT (Lp OMT1) in open conformational state, apo- and holoenzyme forms and, most significantly, in a closed conformational state complexed with the products S-adenosyl-L-homocysteine and sinapaldehyde. The product-bound complex reveals the post-methyl-transfer organization of COMT's catalytic groups with reactant molecules and the fully formed phenolic-ligand binding site. The core scaffold of the phenolic ligand forges a hydrogen-bonding network involving the 4-hydroxy group that anchors the aromatic ring and thereby permits only metahydroxyl groups to be positioned for transmethylation. While distal from the site of transmethylation, the propanoid tail substituent governs the kinetic preference of ryegrass COMT for aldehydes over alcohols and acids due to a single hydrogen bond donor for the C9 oxygenated moiety dictating the preference for an aldehyde.

  3. A comparison of two common sample preparation techniques for lipid and fatty acid analysis in three different coral morphotypes reveals quantitative and qualitative differences.

    Science.gov (United States)

    Conlan, Jessica A; Rocker, Melissa M; Francis, David S

    2017-01-01

    Lipids are involved in a host of biochemical and physiological processes in corals. Therefore, changes in lipid composition reflect changes in the ecology, nutrition, and health of corals. As such, accurate lipid extraction, quantification, and identification is critical to obtain comprehensive insight into a coral's condition. However, discrepancies exist in sample preparation methodology globally, and it is currently unknown whether these techniques generate analogous results. This study compared the two most common sample preparation techniques for lipid analysis in corals: (1) tissue isolation by air-spraying and (2) crushing the coral in toto . Samples derived from each preparation technique were subsequently analysed to quantify lipids and their constituent classes and fatty acids in four common, scleractinian coral species representing three distinct morphotypes ( Acropora millepora , Montipora crassotuberculata , Porites cylindrica , and Pocillopora damicornis ). Results revealed substantial amounts of organic material, including lipids, retained in the skeletons of all species following air-spraying, causing a marked underestimation of total lipid concentration using this method. Moreover, lipid class and fatty acid compositions between the denuded skeleton and sprayed tissue were substantially different. In particular, the majority of the total triacylglycerol and total fatty acid concentrations were retained in the skeleton (55-69% and 56-64%, respectively). As such, the isolated, sprayed tissue cannot serve as a reliable proxy for lipid quantification or identification in the coral holobiont. The in toto crushing method is therefore recommended for coral sample preparation prior to lipid analysis to capture the lipid profile of the entire holobiont, permitting accurate diagnoses of coral condition.

  4. A comparison of two common sample preparation techniques for lipid and fatty acid analysis in three different coral morphotypes reveals quantitative and qualitative differences

    Directory of Open Access Journals (Sweden)

    Jessica A. Conlan

    2017-08-01

    Full Text Available Lipids are involved in a host of biochemical and physiological processes in corals. Therefore, changes in lipid composition reflect changes in the ecology, nutrition, and health of corals. As such, accurate lipid extraction, quantification, and identification is critical to obtain comprehensive insight into a coral’s condition. However, discrepancies exist in sample preparation methodology globally, and it is currently unknown whether these techniques generate analogous results. This study compared the two most common sample preparation techniques for lipid analysis in corals: (1 tissue isolation by air-spraying and (2 crushing the coral in toto. Samples derived from each preparation technique were subsequently analysed to quantify lipids and their constituent classes and fatty acids in four common, scleractinian coral species representing three distinct morphotypes (Acropora millepora, Montipora crassotuberculata, Porites cylindrica, and Pocillopora damicornis. Results revealed substantial amounts of organic material, including lipids, retained in the skeletons of all species following air-spraying, causing a marked underestimation of total lipid concentration using this method. Moreover, lipid class and fatty acid compositions between the denuded skeleton and sprayed tissue were substantially different. In particular, the majority of the total triacylglycerol and total fatty acid concentrations were retained in the skeleton (55–69% and 56–64%, respectively. As such, the isolated, sprayed tissue cannot serve as a reliable proxy for lipid quantification or identification in the coral holobiont. The in toto crushing method is therefore recommended for coral sample preparation prior to lipid analysis to capture the lipid profile of the entire holobiont, permitting accurate diagnoses of coral condition.

  5. Solution Structure of the Tandem Acyl Carrier Protein Domains from a Polyunsaturated Fatty Acid Synthase Reveals Beads-on-a-String Configuration

    KAUST Repository

    Trujillo, Uldaeliz

    2013-02-28

    The polyunsaturated fatty acid (PUFA) synthases from deep-sea bacteria invariably contain multiple acyl carrier protein (ACP) domains in tandem. This conserved tandem arrangement has been implicated in both amplification of fatty acid production (additive effect) and in structural stabilization of the multidomain protein (synergistic effect). While the more accepted model is one in which domains act independently, recent reports suggest that ACP domains may form higher oligomers. Elucidating the three-dimensional structure of tandem arrangements may therefore give important insights into the functional relevance of these structures, and hence guide bioengineering strategies. In an effort to elucidate the three-dimensional structure of tandem repeats from deep-sea anaerobic bacteria, we have expressed and purified a fragment consisting of five tandem ACP domains from the PUFA synthase from Photobacterium profundum. Analysis of the tandem ACP fragment by analytical gel filtration chromatography showed a retention time suggestive of a multimeric protein. However, small angle X-ray scattering (SAXS) revealed that the multi-ACP fragment is an elongated monomer which does not form a globular unit. Stokes radii calculated from atomic monomeric SAXS models were comparable to those measured by analytical gel filtration chromatography, showing that in the gel filtration experiment, the molecular weight was overestimated due to the elongated protein shape. Thermal denaturation monitored by circular dichroism showed that unfolding of the tandem construct was not cooperative, and that the tandem arrangement did not stabilize the protein. Taken together, these data are consistent with an elongated beads-on-a-string arrangement of the tandem ACP domains in PUFA synthases, and speak against synergistic biocatalytic effects promoted by quaternary structuring. Thus, it is possible to envision bioengineering strategies which simply involve the artificial linking of multiple ACP

  6. Metabolic signatures of extreme longevity in northern Italian centenarians reveal a complex remodeling of lipids, amino acids, and gut microbiota metabolism.

    Directory of Open Access Journals (Sweden)

    Sebastiano Collino

    Full Text Available The aging phenotype in humans has been thoroughly studied but a detailed metabolic profiling capable of shading light on the underpinning biological processes of longevity is still missing. Here using a combined metabonomics approach compromising holistic (1H-NMR profiling and targeted MS approaches, we report for the first time the metabolic phenotype of longevity in a well characterized human aging cohort compromising mostly female centenarians, elderly, and young individuals. With increasing age, targeted MS profiling of blood serum displayed a marked decrease in tryptophan concentration, while an unique alteration of specific glycerophospholipids and sphingolipids are seen in the longevity phenotype. We hypothesized that the overall lipidome changes specific to longevity putatively reflect centenarians' unique capacity to adapt/respond to the accumulating oxidative and chronic inflammatory conditions characteristic of their extreme aging phenotype. Our data in centenarians support promotion of cellular detoxification mechanisms through specific modulation of the arachidonic acid metabolic cascade as we underpinned increased concentration of 8,9-EpETrE, suggesting enhanced cytochrome P450 (CYP enzyme activity. Such effective mechanism might result in the activation of an anti-oxidative response, as displayed by decreased circulating levels of 9-HODE and 9-oxoODE, markers of lipid peroxidation and oxidative products of linoleic acid. Lastly, we also revealed that the longevity process deeply affects the structure and composition of the human gut microbiota as shown by the increased extrection of phenylacetylglutamine (PAG and p-cresol sulfate (PCS in urine of centenarians. Together, our novel approach in this representative Italian longevity cohort support the hypothesis that a complex remodeling of lipid, amino acid metabolism, and of gut microbiota functionality are key regulatory processes marking exceptional longevity in humans.

  7. Tissue-specific inactivation of type 2 deiodinase reveals multilevel control of fatty acid oxidation by thyroid hormone in the mouse.

    Science.gov (United States)

    Fonseca, Tatiana L; Werneck-De-Castro, Joao Pedro; Castillo, Melany; Bocco, Barbara M L C; Fernandes, Gustavo W; McAninch, Elizabeth A; Ignacio, Daniele L; Moises, Caio C S; Ferreira, Alexander R; Ferreira, Alexandre; Gereben, Balázs; Bianco, Antonio C

    2014-05-01

    Type 2 deiodinase (D2) converts the prohormone thyroxine (T4) to the metabolically active molecule 3,5,3'-triiodothyronine (T3), but its global inactivation unexpectedly lowers the respiratory exchange rate (respiratory quotient [RQ]) and decreases food intake. Here we used FloxD2 mice to generate systemically euthyroid fat-specific (FAT), astrocyte-specific (ASTRO), or skeletal-muscle-specific (SKM) D2 knockout (D2KO) mice that were monitored continuously. The ASTRO-D2KO mice also exhibited lower diurnal RQ and greater contribution of fatty acid oxidation to energy expenditure, but no differences in food intake were observed. In contrast, the FAT-D2KO mouse exhibited sustained (24 h) increase in RQ values, increased food intake, tolerance to glucose, and sensitivity to insulin, all supporting greater contribution of carbohydrate oxidation to energy expenditure. Furthermore, FAT-D2KO animals that were kept on a high-fat diet for 8 weeks gained more body weight and fat, indicating impaired brown adipose tissue (BAT) thermogenesis and/or inability to oxidize the fat excess. Acclimatization of FAT-D2KO mice at thermoneutrality dissipated both features of this phenotype. Muscle D2 does not seem to play a significant metabolic role given that SKM-D2KO animals exhibited no phenotype. The present findings are unique in that they were obtained in systemically euthyroid animals, revealing that brain D2 plays a dominant albeit indirect role in fatty acid oxidation via its sympathetic control of BAT activity. D2-generated T3 in BAT accelerates fatty acid oxidation and protects against diet-induced obesity.

  8. Comparative transcriptome analysis reveals different molecular mechanisms of Bacillus coagulans 2-6 response to sodium lactate and calcium lactate during lactic acid production.

    Directory of Open Access Journals (Sweden)

    Jiayang Qin

    Full Text Available Lactate production is enhanced by adding calcium carbonate or sodium hydroxide during fermentation. However, Bacillus coagulans 2-6 can produce more than 180 g/L L-lactic acid when calcium lactate is accumulated, but less than 120 g/L L-lactic acid when sodium lactate is formed. The molecular mechanisms by which B. coagulans responds to calcium lactate and sodium lactate remain unclear. In this study, comparative transcriptomic methods based on high-throughput RNA sequencing were applied to study gene expression changes in B. coagulans 2-6 cultured in non-stress, sodium lactate stress and calcium lactate stress conditions. Gene expression profiling identified 712 and 1213 significantly regulated genes in response to calcium lactate stress and sodium lactate stress, respectively. Gene ontology assignments of the differentially expressed genes were performed. KEGG pathway enrichment analysis revealed that 'ATP-binding cassette transporters' were significantly affected by calcium lactate stress, and 'amino sugar and nucleotide sugar metabolism' was significantly affected by sodium lactate stress. It was also found that lactate fermentation was less affected by calcium lactate stress than by sodium lactate stress. Sodium lactate stress had negative effect on the expression of 'glycolysis/gluconeogenesis' genes but positive effect on the expression of 'citrate cycle (TCA cycle' genes. However, calcium lactate stress had positive influence on the expression of 'glycolysis/gluconeogenesis' genes and had minor influence on 'citrate cycle (TCA cycle' genes. Thus, our findings offer new insights into the responses of B. coagulans to different lactate stresses. Notably, our RNA-seq dataset constitute a robust database for investigating the functions of genes induced by lactate stress in the future and identify potential targets for genetic engineering to further improve L-lactic acid production by B. coagulans.

  9. Comparative transcriptome analysis reveals different molecular mechanisms of Bacillus coagulans 2-6 response to sodium lactate and calcium lactate during lactic acid production.

    Science.gov (United States)

    Qin, Jiayang; Wang, Xiuwen; Wang, Landong; Zhu, Beibei; Zhang, Xiaohua; Yao, Qingshou; Xu, Ping

    2015-01-01

    Lactate production is enhanced by adding calcium carbonate or sodium hydroxide during fermentation. However, Bacillus coagulans 2-6 can produce more than 180 g/L L-lactic acid when calcium lactate is accumulated, but less than 120 g/L L-lactic acid when sodium lactate is formed. The molecular mechanisms by which B. coagulans responds to calcium lactate and sodium lactate remain unclear. In this study, comparative transcriptomic methods based on high-throughput RNA sequencing were applied to study gene expression changes in B. coagulans 2-6 cultured in non-stress, sodium lactate stress and calcium lactate stress conditions. Gene expression profiling identified 712 and 1213 significantly regulated genes in response to calcium lactate stress and sodium lactate stress, respectively. Gene ontology assignments of the differentially expressed genes were performed. KEGG pathway enrichment analysis revealed that 'ATP-binding cassette transporters' were significantly affected by calcium lactate stress, and 'amino sugar and nucleotide sugar metabolism' was significantly affected by sodium lactate stress. It was also found that lactate fermentation was less affected by calcium lactate stress than by sodium lactate stress. Sodium lactate stress had negative effect on the expression of 'glycolysis/gluconeogenesis' genes but positive effect on the expression of 'citrate cycle (TCA cycle)' genes. However, calcium lactate stress had positive influence on the expression of 'glycolysis/gluconeogenesis' genes and had minor influence on 'citrate cycle (TCA cycle)' genes. Thus, our findings offer new insights into the responses of B. coagulans to different lactate stresses. Notably, our RNA-seq dataset constitute a robust database for investigating the functions of genes induced by lactate stress in the future and identify potential targets for genetic engineering to further improve L-lactic acid production by B. coagulans.

  10. Solution Structure of the Tandem Acyl Carrier Protein Domains from a Polyunsaturated Fatty Acid Synthase Reveals Beads-on-a-String Configuration

    KAUST Repository

    Trujillo, Uldaeliz; Vá zquez-Rosa, Edwin; Oyola-Robles, Delise; Stagg, Loren J.; Vassallo, David A.; Vega, Irving E.; Arold, Stefan T.; Baerga-Ortiz, Abel

    2013-01-01

    The polyunsaturated fatty acid (PUFA) synthases from deep-sea bacteria invariably contain multiple acyl carrier protein (ACP) domains in tandem. This conserved tandem arrangement has been implicated in both amplification of fatty acid production (additive effect) and in structural stabilization of the multidomain protein (synergistic effect). While the more accepted model is one in which domains act independently, recent reports suggest that ACP domains may form higher oligomers. Elucidating the three-dimensional structure of tandem arrangements may therefore give important insights into the functional relevance of these structures, and hence guide bioengineering strategies. In an effort to elucidate the three-dimensional structure of tandem repeats from deep-sea anaerobic bacteria, we have expressed and purified a fragment consisting of five tandem ACP domains from the PUFA synthase from Photobacterium profundum. Analysis of the tandem ACP fragment by analytical gel filtration chromatography showed a retention time suggestive of a multimeric protein. However, small angle X-ray scattering (SAXS) revealed that the multi-ACP fragment is an elongated monomer which does not form a globular unit. Stokes radii calculated from atomic monomeric SAXS models were comparable to those measured by analytical gel filtration chromatography, showing that in the gel filtration experiment, the molecular weight was overestimated due to the elongated protein shape. Thermal denaturation monitored by circular dichroism showed that unfolding of the tandem construct was not cooperative, and that the tandem arrangement did not stabilize the protein. Taken together, these data are consistent with an elongated beads-on-a-string arrangement of the tandem ACP domains in PUFA synthases, and speak against synergistic biocatalytic effects promoted by quaternary structuring. Thus, it is possible to envision bioengineering strategies which simply involve the artificial linking of multiple ACP

  11. Solution structure of the tandem acyl carrier protein domains from a polyunsaturated fatty acid synthase reveals beads-on-a-string configuration.

    Directory of Open Access Journals (Sweden)

    Uldaeliz Trujillo

    Full Text Available The polyunsaturated fatty acid (PUFA synthases from deep-sea bacteria invariably contain multiple acyl carrier protein (ACP domains in tandem. This conserved tandem arrangement has been implicated in both amplification of fatty acid production (additive effect and in structural stabilization of the multidomain protein (synergistic effect. While the more accepted model is one in which domains act independently, recent reports suggest that ACP domains may form higher oligomers. Elucidating the three-dimensional structure of tandem arrangements may therefore give important insights into the functional relevance of these structures, and hence guide bioengineering strategies. In an effort to elucidate the three-dimensional structure of tandem repeats from deep-sea anaerobic bacteria, we have expressed and purified a fragment consisting of five tandem ACP domains from the PUFA synthase from Photobacterium profundum. Analysis of the tandem ACP fragment by analytical gel filtration chromatography showed a retention time suggestive of a multimeric protein. However, small angle X-ray scattering (SAXS revealed that the multi-ACP fragment is an elongated monomer which does not form a globular unit. Stokes radii calculated from atomic monomeric SAXS models were comparable to those measured by analytical gel filtration chromatography, showing that in the gel filtration experiment, the molecular weight was overestimated due to the elongated protein shape. Thermal denaturation monitored by circular dichroism showed that unfolding of the tandem construct was not cooperative, and that the tandem arrangement did not stabilize the protein. Taken together, these data are consistent with an elongated beads-on-a-string arrangement of the tandem ACP domains in PUFA synthases, and speak against synergistic biocatalytic effects promoted by quaternary structuring. Thus, it is possible to envision bioengineering strategies which simply involve the artificial linking of

  12. Fenóis totais, flavonoides totais e atividade antioxidante de Selaginella convoluta (Arn. Spring (Selaginellaceae

    Directory of Open Access Journals (Sweden)

    Pedro Guilherme Sousa de Sá

    2012-12-01

    Full Text Available Selaginella convoluta é uma espécie conhecida no Nordeste do Brasil como “jericó”, e bastante utilizada na medicina popular para tratamento de doenças. Este estudo teve como objetivo determinar o teor de compostos fenólicos e avaliar a atividade antioxidante in vitro do extrato etanólico e das frações obtidas por partição de S. convoluta. O conteúdo de fenóis totais foi determinado pelo método de Folin-Ciocalteu. O teor de flavonoides totais também foi avaliado. A atividade antioxidante dos extratos foi avaliada usando o método do sequestro do radical DPPH e inibição da auto-oxidação do sistema β-caroteno-ácido linoleico e comparada com os compostos de referência ácido ascórbico, BHA, BHT, quercetina e pirogalol. O conteúdo fenólico total foi de 209,90 ± 19,84 e 61,13 ± 2,50 mg equivalente de ácido gálico/g para os extratos AcOEt e EEB, respectivamente. O conteúdo de flavonoides totais foi de 155,70 ± 6,21 e 62,13 ± 4,10 para os dois extratos, respectivamente. Os extratos AcOEt e EEB apresentaram boas atividades antioxidantes. BHA foi o antioxidante mais efetivo, com um valor de IC50 de 1,62 ± 0,69 µg/mL. Os resultados obtidos mostram que S. convoluta pode ser uma boa fonte de compostos fenólicos antioxidantes. Estudos posteriores serão realizados para se chegar ao isolamento e identificação dos principais constituintes fenólicos dos extratos.

  13. Small molecule inhibitors uncover synthetic genetic interactions of human flap endonuclease 1 (FEN1 with DNA damage response genes.

    Directory of Open Access Journals (Sweden)

    Thomas A Ward

    Full Text Available Flap endonuclease 1 (FEN1 is a structure selective endonuclease required for proficient DNA replication and the repair of DNA damage. Cellularly active inhibitors of this enzyme have previously been shown to induce a DNA damage response and, ultimately, cell death. High-throughput screens of human cancer cell-lines identify colorectal and gastric cell-lines with microsatellite instability (MSI as enriched for cellular sensitivity to N-hydroxyurea series inhibitors of FEN1, but not the PARP inhibitor olaparib or other inhibitors of the DNA damage response. This sensitivity is due to a synthetic lethal interaction between FEN1 and MRE11A, which is often mutated in MSI cancers through instabilities at a poly(T microsatellite repeat. Disruption of ATM is similarly synthetic lethal with FEN1 inhibition, suggesting that disruption of FEN1 function leads to the accumulation of DNA double-strand breaks. These are likely a result of the accumulation of aberrant replication forks, that accumulate as a consequence of a failure in Okazaki fragment maturation, as inhibition of FEN1 is toxic in cells disrupted for the Fanconi anemia pathway and post-replication repair. Furthermore, RAD51 foci accumulate as a consequence of FEN1 inhibition and the toxicity of FEN1 inhibitors increases in cells disrupted for the homologous recombination pathway, suggesting a role for homologous recombination in the resolution of damage induced by FEN1 inhibition. Finally, FEN1 appears to be required for the repair of damage induced by olaparib and cisplatin within the Fanconi anemia pathway, and may play a role in the repair of damage associated with its own disruption.

  14. Microbial ecology in a future climate: effects of temperature and moisture on microbial communities of two boreal fens.

    Science.gov (United States)

    Peltoniemi, Krista; Laiho, Raija; Juottonen, Heli; Kiikkilä, Oili; Mäkiranta, Päivi; Minkkinen, Kari; Pennanen, Taina; Penttilä, Timo; Sarjala, Tytti; Tuittila, Eeva-Stiina; Tuomivirta, Tero; Fritze, Hannu

    2015-07-01

    Impacts of warming with open-top chambers on microbial communities in wet conditions and in conditions resulting from moderate water-level drawdown (WLD) were studied across 0-50 cm depth in northern and southern boreal sedge fens. Warming alone decreased microbial biomass especially in the northern fen. Impact of warming on microbial PLFA and fungal ITS composition was more obvious in the northern fen and linked to moisture regime and sample depth. Fungal-specific PLFA increased in the surface peat in the drier regime and decreased in layers below 10 cm in the wet regime after warming. OTUs representing Tomentella and Lactarius were observed in drier regime and Mortierella in wet regime after warming in the northern fen. The ectomycorrhizal fungi responded only to WLD. Interestingly, warming together with WLD decreased archaeal 16S rRNA copy numbers in general, and fungal ITS copy numbers in the northern fen. Expectedly, many results indicated that microbial response on warming may be linked to the moisture regime. Results indicated that microbial community in the northern fen representing Arctic soils would be more sensitive to environmental changes. The response to future climate change clearly may vary even within a habitat type, exemplified here by boreal sedge fen. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  15. Missed cleavage opportunities by FEN1 lead to Okazaki fragment maturation via the long-flap pathway

    KAUST Repository

    Zaher, Manal S.

    2018-01-27

    RNA-DNA hybrid primers synthesized by low fidelity DNA polymerase α to initiate eukaryotic lagging strand synthesis must be removed efficiently during Okazaki fragment (OF) maturation to complete DNA replication. In this process, each OF primer is displaced and the resulting 5\\'-single-stranded flap is cleaved by structure-specific 5\\'-nucleases, mainly Flap Endonuclease 1 (FEN1), to generate a ligatable nick. At least two models have been proposed to describe primer removal, namely short- and long-flap pathways that involve FEN1 or FEN1 along with Replication Protein A (RPA) and Dna2 helicase/nuclease, respectively. We addressed the question of pathway choice by studying the kinetic mechanism of FEN1 action on short- and long-flap DNA substrates. Using single molecule FRET and rapid quench-flow bulk cleavage assays, we showed that unlike short-flap substrates, which are bound, bent and cleaved within the first encounter between FEN1 and DNA, long-flap substrates can escape cleavage even after DNA binding and bending. Notably, FEN1 can access both substrates in the presence of RPA, but bending and cleavage of long-flap DNA is specifically inhibited. We propose that FEN1 attempts to process both short and long flaps, but occasional missed cleavage of the latter allows RPA binding and triggers the long-flap OF maturation pathway.

  16. Missed cleavage opportunities by FEN1 lead to Okazaki fragment maturation via the long-flap pathway

    KAUST Repository

    Zaher, Manal S.; Rashid, Fahad; Song, Bo; Joudeh, Luay I; Sobhy, Mohamed Abdelmaboud; Tehseen, Muhammad; Hingorani, Manju M; Hamdan, Samir

    2018-01-01

    RNA-DNA hybrid primers synthesized by low fidelity DNA polymerase α to initiate eukaryotic lagging strand synthesis must be removed efficiently during Okazaki fragment (OF) maturation to complete DNA replication. In this process, each OF primer is displaced and the resulting 5'-single-stranded flap is cleaved by structure-specific 5'-nucleases, mainly Flap Endonuclease 1 (FEN1), to generate a ligatable nick. At least two models have been proposed to describe primer removal, namely short- and long-flap pathways that involve FEN1 or FEN1 along with Replication Protein A (RPA) and Dna2 helicase/nuclease, respectively. We addressed the question of pathway choice by studying the kinetic mechanism of FEN1 action on short- and long-flap DNA substrates. Using single molecule FRET and rapid quench-flow bulk cleavage assays, we showed that unlike short-flap substrates, which are bound, bent and cleaved within the first encounter between FEN1 and DNA, long-flap substrates can escape cleavage even after DNA binding and bending. Notably, FEN1 can access both substrates in the presence of RPA, but bending and cleavage of long-flap DNA is specifically inhibited. We propose that FEN1 attempts to process both short and long flaps, but occasional missed cleavage of the latter allows RPA binding and triggers the long-flap OF maturation pathway.

  17. Compostos fenólicos totais e antocianinas em suco de uva

    OpenAIRE

    Malacrida,Cassia R.; Motta,Silvana da

    2005-01-01

    As concentrações de compostos fenólicos totais e antocianinas em sucos de uva reconstituídos e simples, de diferentes marcas, disponíveis no comércio varejista da região metropolitana de Belo Horizonte (Minas Gerais) foram quantificadas. Também se determinou a contribuição das antocianinas poliméricas à cor e o índice de degradação das antocianinas. Os teores de compostos fenólicos totais variaram entre 0,27 e 2,41 g/L e as concentrações de antocianinas de 1,17 a 66,80 mg/L. Foram observadas ...

  18. Net ecosystem exchange in a sedge-sphagnum fen at the South of West Siberia, Russia

    Science.gov (United States)

    Dyukarev, Egor

    2017-04-01

    The model of net ecosystem exchange was used to study the influence of different environmental factors and to calculate daily and growing season carbon budget for minerotrophic fen at South of West Siberia, Russia. Minerotrophic sedge-sphagnum fen occupies the central part of the Bakcharskoe bog. The model uses air and soil temperature, incoming photosynthetically active radiation, and leaf area index as the explanatory factors for gross primary production, heterotrophic and autotrophic respiration. The model coefficients were calibrated using data collected by automated soil CO2 flux system with clear long-term chamber. The studied ecosystem is a sink of carbon according to modelling and observation results. This study was supported by Russian Foundation for Basic Researches (grant numbers 16-07-01205 and 16-45-700562.

  19. Formation dynamics of FeN thin films on Cu(100)

    KAUST Repository

    Heryadi, Dodi

    2012-01-01

    To investigate the structural and magnetic properties of thin films of FeN we have performed ab initio molecular dynamics simulations of their formation on Cu(100) substrates. The iron nitride layers exhibit a p4gm(2 × 2) reconstruction and order ferromagnetically in agreement with experiment. We establish the dynamics and time scale of the film formation as a function of the film thickness. The process is split in two phases: formation of almost flat FeN layers and optimization of the distance to the substrate. Our calculated magnetic moments are 1.67 μ B, 2.14 μ B, and 2.21 μ B for one, two, and three monolayers of iron nitride. © 2011 Elsevier B.V. All rights reserved.

  20. Leaf-litter microfungal community on poor fen plant debris in Torfy Lake area (Central Poland)

    OpenAIRE

    Mateusz Wilk; Agnieszka Banach; Julia Pawłowska; Marta Wrzosek

    2014-01-01

    The purpose of this study was to initially evaluate the species diversity of microfungi growing on litter of 15 plant species occurring on the poor fen and neighbouring area of the Torfy Lake, Masovian voivodeship, Poland. The lake is located near the planned road investment (construction of the Warsaw southern express ring road S2). The place is biologically valuable as there are rare plant communities from Rhynchosporion albae alliance protected under the Habitats Directive adopted by the E...

  1. Ajuste de metodologia da eletroforese de proteínas para obtenção de fenótipos isoenzimáticos de moranga Adjustment of the methodology of protein electrophoresis to obtain isozymatic phenotypes of pumpkin

    Directory of Open Access Journals (Sweden)

    Antonio Teixeira do Amaral Júnior

    1994-01-01

    Full Text Available Modificações no procedimento eletroforético foram introduzidas para uma satisfatória obtenção de fenótipos isoenzimáticos de moranga (Cucurbita maxima Duchesne. Extratos de folhas definitivas de oito acessos de moranga foram submetidos à análise eletroforética para revelação dos seguintes sistemas: esterase (EST; fosfatase ácida (ACP; transaminase do glutamato oxaloacetato (GOT, desidrogenase do malato (MDH e peroxidase (PO. Os resultados apontaram a ineficiência do tampão extrator utilizado e satisfatória qualidade do gel de amido de milho nas resoluções dos sistemas EST, ACP, GOT e MDH. Para o sistema PO, adequado efeito de peneiramento molecular só foi possível com a utilização do amido hidrolisado de batata (Sigma. Ajustes no tempo de cozimento do gel, manuseio da corrente elétrica, preparo de soluções corantes e tempo de revelação indicaram os melhores protocolos ao pro-cedimento eletroforético.Changes in the electrophoresis procedures were introduced to obtain a better isozymatic phenotypes of pumpkin (Cucurbita maxima Duchesne. Extracts of eight access of pumpkin's leaves were subjected to electrophoresis analysis in order to reveal the following systems: esterase (EST, acid phosphatase (ACP, glutamate oxaloacetate transaminase (GOT, malato dehydrogenase (MDH and peroxidase (PO. The results pointed out the inefficiency of the extractor buffer used, and the satisfactory quality of maize starch gel electrophoresis in the resolution of EST, ACP, GOT and MDH systems. For PO system a better effect of "molecular sieving" was only possible when potato starch gel (Sigma was used. Adjusting the starch cooking time, handling the electric current, preparing the staining solutions and revealing time indicated the best protocol to the electrophoresis process.

  2. Microarray Analysis Reveals Higher Gestational Folic Acid Alters Expression of Genes in the Cerebellum of Mice Offspring—A Pilot Study

    Directory of Open Access Journals (Sweden)

    Subit Barua

    2015-01-01

    Full Text Available Folate is a water-soluble vitamin that is critical for nucleotide synthesis and can modulate methylation of DNA by altering one-carbon metabolism. Previous studies have shown that folate status during pregnancy is associated with various congenital defects including the risk of aberrant neural tube closure. Maternal exposure to a methyl supplemented diet also can alter DNA methylation and gene expression, which may influence the phenotype of offspring. We investigated if higher gestational folic acid (FA in the diet dysregulates the expression of genes in the cerebellum of offspring in C57BL/6 J mice. One week before gestation and throughout the pregnancy, groups of dams were supplemented with FA either at 2 mg/kg or 20 mg/kg of diet. Microarray analysis was used to investigate the genome wide gene expression profile in the cerebellum from day old pups. Our results revealed that exposure to the higher dose FA diet during gestation dysregulated expression of several genes in the cerebellum of both male and female pups. Several transcription factors, imprinted genes, neuro-developmental genes and genes associated with autism spectrum disorder exhibited altered expression levels. These findings suggest that higher gestational FA potentially dysregulates gene expression in the offspring brain and such changes may adversely alter fetal programming and overall brain development.

  3. Annual cycle of methane emission from a boreal fen measured by the eddy covariance technique

    International Nuclear Information System (INIS)

    Rinne, Janne.; Pihlatie, Mari; Haapanala, Sami; Vesala, Timo; Riutta, Terhi; Tuittila, Eeva-Stiina; Aurela, Mika; Tuovinen, Juha-Pekka

    2007-01-01

    The northern wetlands are one of the major sources of methane into the atmosphere. We measured annual methane emission from a boreal minerotrophic fen, Siikaneva, by the eddy covariance method. The average wintertime emissions were below 1 mg/m 2 /h, and the summertime emissions about 3.5 mg/m 2 /h. The water table depth did have any clear effect on methane emissions. During most of the year the emission depended on the temperature of peat below the water table. However, during the high and late summer the emission was independent on peat temperature as well. No diurnal cycle of methane flux was found. The total annual emission from the Siikaneva site was 12.6 g/m 2 . The emissions of the snow free period contributed 91% to the annual emission. The emission pulse during the snow melting period was clearly detectable but of minor importance adding only less than 3% to the annual emission. Over 20% of the carbon assimilated during the year as carbon dioxide was emitted as methane. Thus methane emission is an important component of the carbon balance of the Siikaneva fen. This indicates need of taking methane into account when studying carbon balances of northern fen ecosystems

  4. Restoring sedges and mosses into frost heaving iron fens, San Juan Mountains, Colorado

    Directory of Open Access Journals (Sweden)

    R.A. Chimner

    2011-08-01

    Full Text Available Rare iron fens in the San Juan Mountains of Colorado are frequently in poor condition due to mining, roads and ditches, which have left much of the fen completely bare of vegetation. Natural revegetation is slow to occur in the bare areas because of severe frost heave in the cold mountain climate. Therefore, experimental revegetation plots were conducted in a factorial design with mulching and no mulching, crossed with moss diaspores, sedge transplants, and moss and sedge combined. Mulching influenced surface soil temperatures by reducing the midday highs and increasing the night-time lows, which decreased the frequency and amount of frost heave. Peat moisture also modified frost heave, with the greatest frost heaving occurring near 75 % peat moisture content (water table 10–20 cm below the surface and the least when soils were either wetter or drier. Moss survival was dependent on mulch, with no moss surviving in plots without mulch. Mulching also increased sedge transplant survival. In summary, mulching significantly increased the success of vegetation restoration efforts for frost heave areas in mountain fens.

  5. El concepto de fenómeno en el joven Heidegger

    Directory of Open Access Journals (Sweden)

    Francisco De Lara

    2008-01-01

    Full Text Available El presente trabajo es una discusión del concepto de fenómeno tal y como éste se encuentra determinado en la filosofía del joven Heidegger. Con ella se pretende ir a la base que permite dilucidar en qué sentido hace éste fenomenología o, en otras palabras, qué idea de filosofía se encuentra expresada bajo el título de hermenéutica fenomenológica. Al hilo de la lectura del concepto de fenómeno como concepto filosófico, esto es, como indicación formal, nos preguntaremos: 1 cómo se toma en consideración lo investigado fenomenológicamente; 2 cómo debe comparecer lo así investigado y 3 si, en efecto, el concepto de fenómeno funciona siempre en Heidegger como una indicación formal o si no puede constatarse en él una cierta ambigüedad.

  6. Fenómenos mixtos en la división neurosis y psicosis: un estudio de las elaboraciones freudianas

    OpenAIRE

    Aguirre, Javier

    2013-01-01

    El presente trabajo aborda algunos desarrollos freudianos referidos a la división neurosis y psicosis. El análisis se centra en la hipótesis referida a la existencia de fenómenos mixtos, neuróticos y psicóticos, o sea, fenómenos que se presentarían de una misma manera en su articulación en ambas categorías. Se concluye que la expresión “fenómenos mixtos” no es adecuada, en la medida que Freud aborda el fenómeno siempre de una manera articulada y no de una manera aislada, es decir, la caracter...

  7. Fen (n=1–6) clusters chemisorbed on vacancy defects in graphene: Stability, spin-dipole moment, and magnetic anisotropy

    KAUST Repository

    Haldar, Soumyajyoti; Pujari, Bhalchandra S.; Bhandary, Sumanta; Cossu, Fabrizio; Eriksson, Olle; Kanhere, Dilip G.; Sanyal, Biplab

    2014-01-01

    In this work, we have studied the chemical and magnetic interactions of Fen (n=1–6) clusters with vacancy defects (monovacancy to correlated vacancies with six missing C atoms) in a graphene sheet by ab initio density functional calculations

  8. Metabolomics analysis reveals elevation of 3-indoxyl sulfate in plasma and brain during chemically-induced acute kidney injury in mice: Investigation of nicotinic acid receptor agonists

    International Nuclear Information System (INIS)

    Zgoda-Pols, Joanna R.; Chowdhury, Swapan; Wirth, Mark; Milburn, Michael V.; Alexander, Danny C.; Alton, Kevin B.

    2011-01-01

    An investigative renal toxicity study using metabolomics was conducted with a potent nicotinic acid receptor (NAR) agonist, SCH 900424. Liquid chromatography-mass spectrometry (LC-MS) and gas chromatography-mass spectrometry (GC-MS) techniques were used to identify small molecule biomarkers of acute kidney injury (AKI) that could aid in a better mechanistic understanding of SCH 900424-induced AKI in mice. The metabolomics study revealed 3-indoxyl sulfate (3IS) as a more sensitive marker of SCH 900424-induced renal toxicity than creatinine or urea. An LC-MS assay for quantitative determination of 3IS in mouse matrices was also developed. Following treatment with SCH 900424, 3IS levels were markedly increased in murine plasma and brain, thereby potentially contributing to renal- and central nervous system (CNS)-related rapid onset of toxicities. Furthermore, significant decrease in urinary excretion of 3IS in those animals due to compromised renal function may be associated with the elevation of 3IS in plasma and brain. These data suggest that 3IS has a potential to be a marker of renal and CNS toxicities during chemically-induced AKI in mice. In addition, based on the metabolomic analysis other statistically significant plasma markers including p-cresol-sulfate and tryptophan catabolites (kynurenate, kynurenine, 3-indole-lactate) might be of toxicological importance but have not been studied in detail. This comprehensive approach that includes untargeted metabolomic and targeted bioanalytical sample analyses could be used to investigate toxicity of other compounds that pose preclinical or clinical development challenges in a pharmaceutical discovery and development. - Research highlights: → Nicotinic acid receptor agonist, SCH 900424, caused acute kidney injury in mice. → MS-based metabolomics was conducted to identify potential small molecule markers of renal toxicity. → 3-indoxyl-sulfate was found to be as a more sensitive marker of renal toxicity than

  9. Identification of human flap endonuclease 1 (FEN1) inhibitors using a machine learning based consensus virtual screening.

    Science.gov (United States)

    Deshmukh, Amit Laxmikant; Chandra, Sharat; Singh, Deependra Kumar; Siddiqi, Mohammad Imran; Banerjee, Dibyendu

    2017-07-25

    Human Flap endonuclease1 (FEN1) is an enzyme that is indispensable for DNA replication and repair processes and inhibition of its Flap cleavage activity results in increased cellular sensitivity to DNA damaging agents (cisplatin, temozolomide, MMS, etc.), with the potential to improve cancer prognosis. Reports of the high expression levels of FEN1 in several cancer cells support the idea that FEN1 inhibitors may target cancer cells with minimum side effects to normal cells. In this study, we used large publicly available, high-throughput screening data of small molecule compounds targeted against FEN1. Two machine learning algorithms, Support Vector Machine (SVM) and Random Forest (RF), were utilized to generate four classification models from huge PubChem bioassay data containing probable FEN1 inhibitors and non-inhibitors. We also investigated the influence of randomly selected Zinc-database compounds as negative data on the outcome of classification modelling. The results show that the SVM model with inactive compounds was superior to RF with Matthews's correlation coefficient (MCC) of 0.67 for the test set. A Maybridge database containing approximately 53 000 compounds was screened and top ranking 5 compounds were selected for enzyme and cell-based in vitro screening. The compound JFD00950 was identified as a novel FEN1 inhibitor with in vitro inhibition of flap cleavage activity as well as cytotoxic activity against a colon cancer cell line, DLD-1.

  10. Design, construction and performance of an experimental watershed to support a fen peatland for mine landscape reclamation

    Science.gov (United States)

    Price, J. S.; Petrone, R. M.; Strack, M.; Cooper, D. J.

    2017-12-01

    In the Alberta oil sands region, fen peatlands comprised 50% of the boreal landscape. Oil sands mining has stripped over 800 km2 of land surface to access bitumen, necessitating landscape reclamation to re-establish functional wetlands. Fens are peat-dominated wetlands that commonly rely on groundwater to supplement their water budget and deliver dissolved solutes that impart a distinct geochemistry, hence vegetation community. A numerical model was used to test the concept and guide selection of earth materials and system geometry. The goal was to maintain the placed peat in a sufficiently wet condition to support wetland plants and become a net carbon sink, in this sub-humid climate. The 32.1 ha Nikanotee Fen Watershed comprises a 7.7 ha upland, that was designed to recharge sufficient water, and deliver it to the 2.9 ha fen via groundwater flow. These features are surrounded by other reclaimed slopes designed to store water, rather than deliver it downslope. Four years of monitoring since construction show the fen maintains a high water table, and the peatland has become a strong carbon sink, even though the hydrological performance of construction materials varied substantially from what was anticipated (lower hydraulic conductivity). However, solutes associated with the tailings sand used in construction are moving towards the fen, and are expected to influence the future vegetation community and system biogeochemistry. One of the biggest uncertainties is the changing performance of soils and vegetation as they develop.

  11. CRISPR/Cas9-Mediated Gene Editing in Human iPSC-Derived Macrophage Reveals Lysosomal Acid Lipase Function in Human Macrophages-Brief Report.

    Science.gov (United States)

    Zhang, Hanrui; Shi, Jianting; Hachet, Melanie A; Xue, Chenyi; Bauer, Robert C; Jiang, Hongfeng; Li, Wenjun; Tohyama, Junichiro; Millar, John; Billheimer, Jeffrey; Phillips, Michael C; Razani, Babak; Rader, Daniel J; Reilly, Muredach P

    2017-11-01

    To gain mechanistic insights into the role of LIPA (lipase A), the gene encoding LAL (lysosomal acid lipase) protein, in human macrophages. We used CRISPR (clustered regularly interspaced short palindromic repeats)/Cas9 (CRISPR-associated protein 9) technology to knock out LIPA in human induced pluripotent stem cells and then differentiate to macrophage (human-induced pluripotent stem cells-derived macrophage [IPSDM]) to explore the human macrophage LIPA loss-of-function phenotypes. LIPA was abundantly expressed in monocyte-derived macrophages and was markedly induced on IPSDM differentiation to comparable levels as in human monocyte-derived macrophage. IPSDM with knockout of LIPA ( LIPA -/- ) had barely detectable LAL enzymatic activity. Control and LIPA -/- IPSDM were loaded with [ 3 H]-cholesteryl oleate-labeled AcLDL (acetylated low-density lipoprotein) followed by efflux to apolipoprotein A-I. Efflux of liberated [ 3 H]-cholesterol to apolipoprotein A-I was abolished in LIPA -/- IPSDM, indicating deficiency in LAL-mediated lysosomal cholesteryl ester hydrolysis. In cells loaded with [ 3 H]-cholesterol-labeled AcLDL, [ 3 H]-cholesterol efflux was, however, not different between control and LIPA -/- IPSDM. ABCA1 (ATP-binding cassette, subfamily A, member 1) expression was upregulated by AcLDL loading but to a similar extent between control and LIPA -/- IPSDM. In nonlipid loaded state, LIPA -/- IPSDM had high levels of cholesteryl ester mass compared with minute amounts in control IPSDM. Yet, with AcLDL loading, overall cholesteryl ester mass was increased to similar levels in both control and LIPA -/- IPSDM. LIPA -/- did not impact lysosomal apolipoprotein-B degradation or expression of IL1B , IL6 , and CCL5. CONCLUSIONS: LIPA -/- IPSDM reveals macrophage-specific hallmarks of LIPA deficiency. CRISPR/Cas9 and IPSDM provide important tools to study human macrophage biology and more broadly for future studies of disease-associated LIPA genetic variation in human

  12. Antioxidant profiling of native Andean potato tubers (Solanum tuberosum L.) reveals cultivars with high levels of beta-carotene, alpha-tocopherol, chlorogenic acid, and petanin.

    Science.gov (United States)

    Andre, Christelle M; Oufir, Mouhssin; Guignard, Cédric; Hoffmann, Lucien; Hausman, Jean-François; Evers, Danièle; Larondelle, Yvan

    2007-12-26

    The antioxidant profile of 23 native Andean potato cultivars has been investigated from a human nutrition perspective. The main carotenoid and tocopherol compounds were studied using high-performance liquid chromatography coupled with a diode array detector (HPLC-DAD) and a fluorescence detector, respectively, whereas polyphenols (including anthocyanins in colored tubers) were identified by means of both HPLC-mass spectrometry and HPLC-DAD. Antioxidant profiling revealed significant genotypic variations as well as cultivars of particular interest from a nutritional point of view. Concentrations of the health-promoting carotenoids, lutein and zeaxanthin, ranged from 1.12 to 17.69 microg g(-1) of dry weight (DW) and from 0 to 17.7 microg g(-1) of DW, with cultivars 704353 and 702472 showing the highest levels in lutein and zeaxanthin, respectively. Whereas beta-carotene is rarely reported in potato tubers, remarkable levels of this dietary provitamin A carotenoid were detected in 16 native varieties, ranging from 0.42 to 2.19 microg g(-1) of DW. The amounts of alpha-tocopherol found in Andean potato tubers, extending from 2.73 to 20.80 microg g(-1) of DW, were clearly above the quantities generally reported for commercial varieties. Chlorogenic acid and its isomers dominated the polyphenolic profile of each cultivar. Dark purple-fleshed tubers from the cultivar 704429 contained exceptionally high levels of total anthocyanins (16.33 mg g(-1) of DW). The main anthocyanin was identified as petanin (petunidin-3-p-coumaroyl-rutinoside-5-glucoside). The results suggest that Andean potato cultivars should be exploited in screening and breeding programs for the development of potato varieties with enhanced health and nutritional benefits.

  13. Seasonal Trace Gas Dynamics on Minerotrophic Fen Peatlands in NE-Germany

    Science.gov (United States)

    Giebels, Michael; Beyer, Madlen; Augustin, Jürgen; Minke, Merten; Juszczak, Radoszlav; Serba, Tomasz

    2010-05-01

    In Germany more than 99 % of fens have lost their carbon and nutrient sink function due to heavy drainage and agricultural land use especially during the last decades and thus resulted in compression and heavy peat loss (CHARMAN 2002; JOOSTEN & CLARKE 2002; SUCCOW & JOOSTEN 2001; AUGUSTIN et al. 1996; KUNTZE 1993). Therefore fen peatlands play an important part (4-5 %) in the national anthropogenic trace gas budget. But only a small part of drained and agricultural used fens in NE Germany can be restored. Knowledge of the influence of land use to trace gas exchange is important for mitigation of the climate impact of the anthropogenic peatland use. We study carbon exchanges of several fen peatland use areas between soil and atmosphere at different sites in NE-Germany. Our research covers peatlands of supposed strongly climate forcing land use (cornfield and intensive pasture) and of probably less forcing, alternative types (meadow and extensive pasture) as well as rewetted (formerly drained) areas and near-natural sites like a low-degraded fen and a wetted alder woodland. We measured trace gas fluxes with manual and automatic chambers in periodic routines since spring 2007. The used chamber technique bases on DROESLER (2005). In total we now do research at 22 sites situated in 5 different locations covering agricultural, varying states of rewetted and near-natural treatments. We present results of at least 2 years of measurements and show significant differences in their annual trace gas balances depending on the genesis of the observed sites and the seasonal dynamics. Crosswise comparison of different site treatments combined with the seasonal environmental observations give good hints for the identification of main flux driving parameters. That is that a reduced intensity in land use as a supposed mitigating treatment did not show the expected effect, though a normal meadow treatment surprisingly resulted in the lowest balances in both years. For implementing a

  14. Seasonal Carbon Dynamics on Selected Fen Peatland Sites in NE-Germany

    Science.gov (United States)

    Giebels, Michael; Beyer, Madlen; Augustin, Jürgen; Minke, Merten; Juszczak, Radoszlav; Serba, Tomasz

    2010-05-01

    In Germany more than 99 % of fens have lost their carbon and nutrient sink function due to heavy drainage and agricultural land use especially during the last decades and thus resulted in compression and heavy peat loss (CHARMAN 2002; JOOSTEN & CLARKE 2002; SUCCOW & JOOSTEN 2001; AUGUSTIN et al. 1996; KUNTZE 1993). Therefore fen peatlands play an important part (4-5 %) in the national anthropogenic trace gas budget. But only a small part of drained and agricultural used fens in NE Germany can be restored. Knowledge of the influence of land use to trace gas exchange is important for mitigation of the climate impact of the anthropogenic peatland use. We study carbon exchanges of several fen peatland use areas between soil and atmosphere at different sites in NE-Germany. Our research covers peatlands of supposed strongly climate forcing land use (cornfield and intensive pasture) and of probably less forcing, alternative types (meadow and extensive pasture) as well as rewetted (formerly drained) areas and near-natural sites like a low-degraded fen and a wetted alder woodland. We measured trace gas fluxes with manual and automatic chambers in periodic routines since spring 2007. The used chamber technique bases on DROESLER (2005). In total we now do research at 22 sites situated in 5 different locations covering agricultural, varying states of rewetted and near-natural treatments. We present results of at least 2 years of measurements and show significant differences in their annual carbon balances depending on the genesis of the observed sites and the seasonal dynamics. Crosswise comparison of different site treatments combined with the seasonal environmental observations give good hints for the identification of main flux driving parameters. That is that a reduced intensity in land use as a supposed mitigating treatment did not show the expected effect, though a normal meadow treatment surprisingly resulted in the lowest CO2 balances in both years. For implementing a

  15. The GAN Exonuclease or the Flap Endonuclease Fen1 and RNase HII Are Necessary for Viability of Thermococcus kodakarensis.

    Science.gov (United States)

    Burkhart, Brett W; Cubonova, Lubomira; Heider, Margaret R; Kelman, Zvi; Reeve, John N; Santangelo, Thomas J

    2017-07-01

    Many aspects of and factors required for DNA replication are conserved across all three domains of life, but there are some significant differences surrounding lagging-strand synthesis. In Archaea , a 5'-to-3' exonuclease, related to both bacterial RecJ and eukaryotic Cdc45, that associates with the replisome specifically through interactions with GINS was identified and designated GAN (for G INS- a ssociated n uclease). Despite the presence of a well-characterized flap endonuclease (Fen1), it was hypothesized that GAN might participate in primer removal during Okazaki fragment maturation, and as a Cdc45 homologue, GAN might also be a structural component of an archaeal CMG (Cdc45, MCM, and GINS) replication complex. We demonstrate here that, individually, either Fen1 or GAN can be deleted, with no discernible effects on viability and growth. However, deletion of both Fen1 and GAN was not possible, consistent with both enzymes catalyzing the same step in primer removal from Okazaki fragments in vivo RNase HII has also been proposed to participate in primer processing during Okazaki fragment maturation. Strains with both Fen1 and RNase HII deleted grew well. GAN activity is therefore sufficient for viability in the absence of both RNase HII and Fen1, but it was not possible to construct a strain with both RNase HII and GAN deleted. Fen1 alone is therefore insufficient for viability in the absence of both RNase HII and GAN. The ability to delete GAN demonstrates that GAN is not required for the activation or stability of the archaeal MCM replicative helicase. IMPORTANCE The mechanisms used to remove primer sequences from Okazaki fragments during lagging-strand DNA replication differ in the biological domains. Bacteria use the exonuclease activity of DNA polymerase I, whereas eukaryotes and archaea encode a flap endonuclease (Fen1) that cleaves displaced primer sequences. RNase HII and the GINS-associated exonuclease GAN have also been hypothesized to assist in primer

  16. Research of Ancient Architectures in Jin-Fen Area Based on GIS&BIM Technology

    Science.gov (United States)

    Jia, Jing; Zheng, Qiuhong; Gao, Huiying; Sun, Hai

    2017-05-01

    The number of well-preserved ancient buildings located in Shanxi Province, enjoying the absolute maximum proportion of ancient architectures in China, is about 18418, among which, 9053 buildings have the structural style of wood frame. The value of the application of BIM (Building Information Modeling) and GIS (Geographic Information System) is gradually probed and testified in the corresponding fields of ancient architecture’s spatial distribution information management, routine maintenance and special conservation & restoration, the evaluation and simulation of related disasters, such as earthquake. The research objects are ancient architectures in JIN-FEN area, which were first investigated by Sicheng LIANG and recorded in his work of “Chinese ancient architectures survey report”. The research objects, i.e. the ancient architectures in Jin-Fen area include those in Sicheng LIANG’s investigation, and further adjustments were made through authors’ on-site investigation and literature searching & collection. During this research process, the spatial distributing Geodatabase of research objects is established utilizing GIS. The BIM components library for ancient buildings is formed combining on-site investigation data and precedent classic works, such as “Yingzao Fashi”, a treatise on architectural methods in Song Dynasty, “Yongle Encyclopedia” and “Gongcheng Zuofa Zeli”, case collections of engineering practice, by the Ministry of Construction of Qing Dynasty. A building of Guangsheng temple in Hongtong county is selected as an example to elaborate the BIM model construction process based on the BIM components library for ancient buildings. Based on the foregoing work results of spatial distribution data, attribute data of features, 3D graphic information and parametric building information model, the information management system for ancient architectures in Jin-Fen Area, utilizing GIS&BIM technology, could be constructed to support the

  17. Violencia en la pareja, las caras del fenómeno

    Directory of Open Access Journals (Sweden)

    Luz Elena Ocampo Otálvaro

    2011-01-01

    Full Text Available Este trabajo pretende mostrar las diversas caras o facetas del fenómeno de la violencia en la pareja, el mismo que en la literatura es conocido como violencia conyugal, violencia doméstica, violencia por parte del compañero íntimo, etc. Se identifica como un problema de salud pública, debido a los altos costos que genera y la manera como lesiona la vida cotidiana de quienes lo padecen. Se manifiesta en el seno de las relaciones de pareja, e irradia hacia los diversos ámbitos de interacción de los actores: mujer, varón, niño, niña. Involucra a todo el grupo o los grupos familiares de quienes lo viven, y puede lesionar de forma severa a los mismos. Se revisan aspectos del fenómeno, como el hecho que no sólo se presenta en las relaciones en las que la pareja tenga una unión de hecho, sino también en parejas de novios. No solo afecta a las mujeres o a las niñas; también afecta a los hombres. Tampoco es exclusivo de las parejas heterosexuales; los estudios muestran que entre parejas del mismo sexo también está presente. Se trata entonces de un fenómeno universal, multicausal, multidimensional, de salud y de tipo legal, que genera consecuencias que incluyen desde un problema de autoestima, de ansiedad, de depresión, de estrés hasta la muerte misma.

  18. Evaluation on the Efficiency of Subsurface Drainage in Chiu-Fen Landslide at Northern Taiwan

    Science.gov (United States)

    Ying, L. Y.; Lin, D. G.

    2015-12-01

    For administrative district, the Chiu-Fen landslide is situated at northern Taiwan and comes within the jurisdiction of Ruei-Fang district, New Taipei City Government. Chiu-Fen village is a famous spot for sightseeing and tourism in Southeast Asia. In the last decade, for economic purpose, a vast area of slope land in Chiu-Fen area was reclaimed into business and commercial districts. However, due to the complicated geological and hydrological conditions, improper reclamation, and lack of appropriate soil and water conservation facilities, large scale landslides are frequently triggered by typhoon rainfall and causes damages to the transportation and residential building in the community. As a consequence, the government initiated a comprehensive field investigations and remediation plans to stabilize the landslide from 1997 and the remediation works were concentrated on subsurface drainages, namely the application of drainage well (a vertical shaft with multi-level horizontal drainage boreholes). To investigate the efficiency of drainage wells on the landslide, the A1-profile in the landslide which covers the drainage wells W2 and W4 was selected for a series of rainfall seepage and slope stability analyses. In addition, a 48-hrs design rainfall with return period of 25, 50 and 100 years based on the local meteorological data bank was adopted for the analyses. The numerical results indicate the factor safety FS of the three potential sliding surfaces within A1-profile are constantly keeping greater than one (FS > 1.0) and without decreasing with the elapsed time during rainfall. This implies that the subsurface drainage works can drain off the infiltrated rainwater from a high intensity and long duration rainfall and preserve the slope stability of landslides from deterioration. Finally, the efficiency of the drainage wells can be evaluated quantitatively in terms of the time-dependent factor of safety and the pore water pressure distribution on several potential

  19. Research of Ancient Architectures in Jin-Fen Area Based on GIS and BIM Technology

    International Nuclear Information System (INIS)

    Jia, Jing; Zheng, Qiuhong; Gao, Huiying; Sun, Hai

    2017-01-01

    The number of well-preserved ancient buildings located in Shanxi Province, enjoying the absolute maximum proportion of ancient architectures in China, is about 18418, among which, 9053 buildings have the structural style of wood frame. The value of the application of BIM (Building Information Modeling) and GIS (Geographic Information System) is gradually probed and testified in the corresponding fields of ancient architecture’s spatial distribution information management, routine maintenance and special conservation and restoration, the evaluation and simulation of related disasters, such as earthquake. The research objects are ancient architectures in JIN-FEN area, which were first investigated by Sicheng LIANG and recorded in his work of “Chinese ancient architectures survey report”. The research objects, i.e. the ancient architectures in Jin-Fen area include those in Sicheng LIANG’s investigation, and further adjustments were made through authors’ on-site investigation and literature searching and collection. During this research process, the spatial distributing Geodatabase of research objects is established utilizing GIS. The BIM components library for ancient buildings is formed combining on-site investigation data and precedent classic works, such as “Yingzao Fashi”, a treatise on architectural methods in Song Dynasty, “Yongle Encyclopedia” and “Gongcheng Zuofa Zeli”, case collections of engineering practice, by the Ministry of Construction of Qing Dynasty. A building of Guangsheng temple in Hongtong county is selected as an example to elaborate the BIM model construction process based on the BIM components library for ancient buildings. Based on the foregoing work results of spatial distribution data, attribute data of features, 3D graphic information and parametric building information model, the information management system for ancient architectures in Jin-Fen Area, utilizing GIS and BIM technology, could be constructed to support

  20. Functional analysis of sequences adjacent to dapE of Corynebacterium glutamicum reveals the presence of aroP, which encodes the aromatic amino acid transporter.

    Science.gov (United States)

    Wehrmann, A; Morakkabati, S; Krämer, R; Sahm, H; Eggeling, L

    1995-10-01

    An initially nonclonable DNA locus close to a gene of L-lysine biosynthesis in Corynebacterium glutamicum was analyzed in detail. Its stepwise cloning and its functional identification by monitoring the amino acid uptakes of defined mutants, together with mechanistic studies, identified the corresponding structure as aroP, the general aromatic amino acid uptake system.

  1. Eletricidade Atmosférica e Fenômenos Correlatos

    OpenAIRE

    Tavares, M.; Santiago, M.A.M

    2002-01-01

    A qualquer momento, existem cerca de 2000 tempestades com relâmpagos nos cêus em torno do mundo. Estima-se que as tempestades combinadas produzem aproximadamente 100 descargas de raios por segundo, cada uma com temperatura em torno de 30.0000ºC - mais quente que a superfície do Sol. Esse trabalho apresenta aos leitores alguns fenômenos elêtricos na atmosfera e estratosfera. Tais eventos fazem parte de um sugerido circuito elêtrico atmosfêrico global e estão conectados à pesquisa de plasmas. A...

  2. Potencial de actividad antioxidante de extractos fenólicos de Theobroma cacao L. (cacao)

    OpenAIRE

    Quiñones Gálvez, Janet; Trujillo Sánchez, Reinaldo; Capdesuñer Ruiz, Yanelis; Quirós Molina, Yemeys; Hernández de la Torre, Martha

    2013-01-01

    Introducción: Theobroma cacao L. (cacao), familia Sterculiaceae, es una planta rica en fenoles, los cuales en las plantas son de especial interés por su potente actividad antioxidante, dada esencialmente por sus propiedades redox, que pueden desempeñar un papel importante en la absorción y neutralización de los radicales libres. Objetivos: seleccionar un clon promisorio en la producción de compuestos fenólicos, determinar los órganos con mayor contenido de fenoles, establecer el cultivo in vi...

  3. Estudio nacional exploratorio descriptivo sobre el fenómeno de trata de personas en Colombia.

    OpenAIRE

    2009-01-01

    Para el Ministerio del Interior y de Justicia como Secretaría Técnica del Comité Interinstitucional para la lucha contra la Trata de Personas y para la Oficina de Naciones Unidas contra la Droga y el Delito en Colombia UNODC, es un honor presentar a ustedes en esta oportunidad el primer Estudio Nacional Exploratorio Descriptivo sobre el Fenómeno de la Trata de Personas en Colombia, desarrollado por unequipo de Investigadoras e Investigadores de la Escuela de Estudios de Género de la Universid...

  4. BOREAS TGB-3 Plant Species Composition Data over the NSA Fen

    Science.gov (United States)

    Bubier, Jill L.; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor)

    2000-01-01

    The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-3) team collected several data sets that contributed to understanding the measured trace gas fluxes over sites in the Northern Study Area (NSA). This data set contains information about the composition of plant species that were within the collars used to measure Net Ecosystem Exchange of CO2 (NEE). The species composition was identified to understand the differences in NEE among the various plant communities in the NSA fen. The data were collected in July of 1994 and 1996. The data are contained in comma-delimited, ASCII files.

  5. BOREAS TGB-1/TGB-3 NEE Data over the NSA Fen

    Science.gov (United States)

    Bellisario, Lianne; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor); Moore, Tim R.

    2000-01-01

    The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-1) and TGB-3 teams collected several data sets that contributed to understanding the measured trace gas fluxes over sites in the Northern Study Area (NSA). This data set contains Net Ecosystem Exchange of CO2 (NEE) measurements collected with chambers at the NSA fen in 1994 and 1996. Gas samples were extracted approximately every 7 days from chambers and analyzed at the NSA lab facility. The data are provided in tabular ASCII files.

  6. In Silico and Wet Lab Studies Reveal the Cholesterol Lowering Efficacy of Lauric Acid, a Medium Chain Fat of Coconut Oil.

    Science.gov (United States)

    Lekshmi Sheela, Devi; Nazeem, Puthiyaveetil Abdulla; Narayanankutty, Arunaksharan; Manalil, Jeksy Jos; Raghavamenon, Achuthan C

    2016-12-01

    The coconut oil (CO) contains 91 % of saturated fatty acids in which 72 % are medium chain fatty acids (MCFAs) like lauric, capric and caprylic acids. In contrast to animal fat, coconut oil has no cholesterol. Despite this fact, CO is sidelined among other vegetable oils due to the health hazards attributed to the saturated fatty acids. Though various medicinal effects of CO have been reported including the hypolipidemic activity, people are still confused in the consumption of this natural oil. In silico analyses and wet lab experiments have been carried out to identify the hypolipidemic properties of MCFAs and phenolic acids in CO by using different protein targets involved in cholesterol synthesis. The molecular docking studies were carried out using CDOCKER protocol in Accelery's Discovery Studio, by taking different proteins like HMG- CoA reductase and cholesterol esterase as targets and the different phytocompounds in coconut as ligands. Molecular docking highlighted the potential of lauric acid in inhibiting the protein targets involved in hyperlipidemics. Further, validation of in silico results was carried out through in vivo studies. The activity of key enzymes HMG- CoA reductase and lipoprotein lipase were found reduced in animals fed with lauric acid and CO.

  7. Intra-specific diet shift in manila clams (Ruditapes philippinarum) as revealed by carbon and nitrogen stable isotopes and fatty acid biomarker

    Science.gov (United States)

    Suh, Y.; Shin, K.

    2011-12-01

    Manila clams sampled in Seonjae Island, Korea with shell lengths (SL) below 19.76 mm in average showed a significantly depleted carbon and nitrogen isotope values (Pcultured in IFHRI. The result of fatty acid composition of manila clams in relation to size or growth rate suggests that fast growing clams would have rapid metabolism of fatty acids not required by the animals and an accumulation of the essential fatty acids (PUFA). In addition, their higher energy requirement and more active state of development would further diminish lipid reserve of the species.

  8. Fenómenos que Organizan el Límite (Phenomena that Organize Limits

    Directory of Open Access Journals (Sweden)

    María Teresa Sánchez

    2007-03-01

    Full Text Available En este artículo se pone de manifiesto la presencia de los fenómenos de aproximación organizados por una definición de límite en el caso de las sucesiones de números reales y de las funciones reales de una variable real. La exposición incluye la caracterización de tales fenómenos, una descripción del análisis comparativo desarrollado en base a ellos entre dos definiciones formales de límite de sucesión y función, y una síntesis del estudio llevado a cabo sobre una muestra intencional de libros de texto de matemáticas.In this paper we show the presence of the phenomena of approximation organized by a definition of limit in the cases of the successions of real numbers and the real functions of one real variable. The exposition includes the characterization of such phenomena, a description of the comparative analysis, developed using them, between two formal definitions of limit of succession and function, and a synthesis of the study carried out on an intentional sample of mathematics textbooks.

  9. Experiencias para observar el fenómeno de fluorescencia con luz ultravioleta

    Directory of Open Access Journals (Sweden)

    Heredia Avalos, S.

    2008-09-01

    Full Text Available La fluorescencia tiene lugar cuando una sustancia emite luz visible al absorber radiación de una longitud de onda menor, como por ejemplo luz ultravioleta. La diferencia entre la energía absorbida (del fotón ultravioleta y la emitida (del fotón visible se disipa en forma de calor. Se dice que la sustancia posee fluorescenciacuando este proceso es muy rápido; si es más lento se dice que la sustancia posee fosforescencia. A continuación se describen varias experiencias sencillas para poner de manifiesto el fenómeno de fluorescencia. Todas ellas requieren de reactivos y materiales fácilmente accesibles y asequibles y se pueden realizar con alumnos de secundaria o de bachillerato para poner de manifiesto este fenómeno. Además, también se propone una experiencia en la que se observa la reversibilidad de las reacciones químicas ácido-base a través de la fluorescencia.

  10. Gravidez na adolescência: um olhar sobre um fenômeno complexo

    Directory of Open Access Journals (Sweden)

    Ana Cristina Garcia Dias

    2010-04-01

    Full Text Available O presente trabalho apresenta uma revisão seletiva e não sistemática da literatura a respeito do fenômeno da gestação na adolescência. Três eixos temáticos orientam a organização do trabalho: (a Riscos e problemas associados à gestação na adolescência; (b Fatores precursores relacionados à gravidez na adolescência; e (c Fatores sócio-culturais associados ao desejo de ser mãe na adolescência. Entre as conclusões, destaca-se que a gravidez na adolescência é uma experiência que pode ter consequências tanto negativas quanto positivas para os adolescentes. Além disso, o fenômeno evidencia a necessidade de intervenções voltadas à saúde sexual e reprodutiva dos adolescentes.

  11. Measurement of 54Fe(n,2n)53Fe cross section near threshold

    International Nuclear Information System (INIS)

    Smither, R.K.; Greenwood, L.R.

    1984-01-01

    A series of experiments were performed at the Princeton Plasma Physics Laboratory to measure the cross section of the 54 Fe(n,2n) 53 Fe reaction near threshold. Measurements were made at 6 different neutron energies and cover the 1 MeV energy range from threshold (13.64 MeV) to 14.64 MeV. The 54 Fe(n,2n) cross section was measured relative to the 27 Al(n,p) 27 Mg cross section to an accuracy of a few percent. These accurate cross-section measurements will be useful in calculating damage caused by 14 MeV D-T plasma neutrons in Fe and calculating the production of the long-lived 53 Mn nuclei that account for much of the buildup of long-lived radioactivity in steel structures and other ferrous materials used in the construction of fusion reactors. They will also play an important part in a new method for measuring the plasma ion temperature of a D-T plasma

  12. Compostos fenólicos e capacidade antioxidante em frutos de tomateiros mutantes fotomorfogenéticos

    Directory of Open Access Journals (Sweden)

    Tiago Dias

    2015-05-01

    Full Text Available Compostos fenólicos e capacidade antioxidante são mecanismos de defesa das plantas aos danos do estresse oxidativo. Os compostos fenólicos são sintetizados pela via dos fenilpropanoides, cuja enzima chave, fenilalanina amônia liase, é influenciada pela luz e ação de fotorreceptores, como o fitocromo. O objetivo do presente trabalho é avaliar a concentração de compostos fenólicos e a capacidade antioxidante de frutos de microtomateiro selvagem, cultivar "Micro-Tom" (MT, e seus mutantes fotomorfogenéticos high pigment 1 (hp1, super-responsivo a eventos mediados por luz e aurea (au, deficiente quantitativo em fitocromos. Vinte frutos maduros de cada genótipo (MT, hp1 e au foram utilizados para as análises, realizadas em triplicata. Para quantificação dos compostos fenólicos totais, foi utilizado o método de Folin-Ciocalteu e a capacidade antioxidante foi realizada pelos métodos Ferric Reducing Antioxidant Power (FRAP e 2,2-diphenyl-1-picrylhydrazyl (DPPH. Os frutos do mutante hp1 apresentaram maiores conteúdos de compostos fenólicos totais e também maior capacidade antioxidante em relação à cultivar selvagem ("MT" e ao mutante au, o qual não diferiu significativamente da cultivar "MT".

  13. Real-Time Tracking of BODIPY-C12 Long-Chain Fatty Acid in Human Term Placenta Reveals Unique Lipid Dynamics in Cytotrophoblast Cells.

    Directory of Open Access Journals (Sweden)

    Kevin Kolahi

    Full Text Available While the human placenta must provide selected long-chain fatty acids to support the developing fetal brain, little is known about the mechanisms underlying the transport process. We tracked the movement of the fluorescently labeled long-chain fatty acid analogue, BODIPY-C12, across the cell layers of living explants of human term placenta. Although all layers took up the fatty acid, rapid esterification of long-chain fatty acids and incorporation into lipid droplets was exclusive to the inner layer cytotrophoblast cells rather than the expected outer syncytiotrophoblast layer. Cytotrophoblast is a progenitor cell layer previously relegated to a repair role. As isolated cytotrophoblasts differentiated into syncytialized cells in culture, they weakened their lipid processing capacity. Syncytializing cells suppress previously active genes that regulate fatty-acid uptake (SLC27A2/FATP2, FABP4, ACSL5 and lipid metabolism (GPAT3, LPCAT3. We speculate that cytotrophoblast performs a previously unrecognized role in regulating placental fatty acid uptake and metabolism.

  14. Determination of the 54Fe(n, 2n)53gFe and 54Fe(n, 2n)53mFe cross sections averaged over a 235U fission neutron spectrum

    International Nuclear Information System (INIS)

    Ribeiro Guevara, S.; Arribere, M.; Kestelman, A.J.

    2002-01-01

    The reaction cross sections averaged over a 235 U fission neutron spectrum have been measured for the 54 Fe(n, 2n) 53g Fe and 54 Fe(n, 2n) 53m Fe threshold reactions. The values found are, respectively: (1.14 ± 0.13) μb, and (0.52 ± 0.16) μb. The measured cross sections are referred to the (111± 3) mb standard cross section of the 58 Ni(n, p) 58m+g Co reaction. The (81.7 ± 2.2) mb standard cross section value for the 54 Fe(n, p) 54 Mn reaction, was also used as a monitor to check the results obtained with the Ni standard, leading to an excellent agreement. (author)

  15. Overexpression of human fatty acid transport protein 2/very long chain acyl-CoA synthetase 1 (FATP2/Acsvl1) reveals distinct patterns of trafficking of exogenous fatty acids

    Energy Technology Data Exchange (ETDEWEB)

    Melton, Elaina M. [Department of Biochemistry, University of Nebraska, Lincoln, NE (United States); Center for Cardiovascular Sciences, Albany Medical College, Albany, NY (United States); Cerny, Ronald L. [Department of Chemistry, University of Nebraska, Lincoln, NE (United States); DiRusso, Concetta C. [Department of Biochemistry, University of Nebraska, Lincoln, NE (United States); Black, Paul N., E-mail: pblack2@unl.edu [Department of Biochemistry, University of Nebraska, Lincoln, NE (United States)

    2013-11-01

    Highlights: •Roles of FATP2 in fatty acid transport/activation contribute to lipid homeostasis. •Use of 13C- and D-labeled fatty acids provide novel insights into FATP2 function. •FATP2-dependent trafficking of FA into phospholipids results in distinctive profiles. •FATP2 functions in the transport and activation pathways for exogenous fatty acids. -- Abstract: In mammals, the fatty acid transport proteins (FATP1 through FATP6) are members of a highly conserved family of proteins, which function in fatty acid transport proceeding through vectorial acylation and in the activation of very long chain fatty acids, branched chain fatty acids and secondary bile acids. FATP1, 2 and 4, for example directly function in fatty acid transport and very long chain fatty acids activation while FATP5 does not function in fatty acid transport but activates secondary bile acids. In the present work, we have used stable isotopically labeled fatty acids differing in carbon length and saturation in cells expressing FATP2 to gain further insights into how this protein functions in fatty acid transport and intracellular fatty acid trafficking. Our previous studies showed the expression of FATP2 modestly increased C16:0-CoA and C20:4-CoA and significantly increased C18:3-CoA and C22:6-CoA after 4 h. The increases in C16:0-CoA and C18:3-CoA suggest FATP2 must necessarily partner with a long chain acyl CoA synthetase (Acsl) to generate C16:0-CoA and C18:3-CoA through vectorial acylation. The very long chain acyl CoA synthetase activity of FATP2 is consistent in the generation of C20:4-CoA and C22:6-CoA coincident with transport from their respective exogenous fatty acids. The trafficking of exogenous fatty acids into phosphatidic acid (PA) and into the major classes of phospholipids (phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylinositol (PI), and phosphatidyserine (PS)) resulted in distinctive profiles, which changed with the expression of FATP2. The

  16. Overexpression of human fatty acid transport protein 2/very long chain acyl-CoA synthetase 1 (FATP2/Acsvl1) reveals distinct patterns of trafficking of exogenous fatty acids

    International Nuclear Information System (INIS)

    Melton, Elaina M.; Cerny, Ronald L.; DiRusso, Concetta C.; Black, Paul N.

    2013-01-01

    Highlights: •Roles of FATP2 in fatty acid transport/activation contribute to lipid homeostasis. •Use of 13C- and D-labeled fatty acids provide novel insights into FATP2 function. •FATP2-dependent trafficking of FA into phospholipids results in distinctive profiles. •FATP2 functions in the transport and activation pathways for exogenous fatty acids. -- Abstract: In mammals, the fatty acid transport proteins (FATP1 through FATP6) are members of a highly conserved family of proteins, which function in fatty acid transport proceeding through vectorial acylation and in the activation of very long chain fatty acids, branched chain fatty acids and secondary bile acids. FATP1, 2 and 4, for example directly function in fatty acid transport and very long chain fatty acids activation while FATP5 does not function in fatty acid transport but activates secondary bile acids. In the present work, we have used stable isotopically labeled fatty acids differing in carbon length and saturation in cells expressing FATP2 to gain further insights into how this protein functions in fatty acid transport and intracellular fatty acid trafficking. Our previous studies showed the expression of FATP2 modestly increased C16:0-CoA and C20:4-CoA and significantly increased C18:3-CoA and C22:6-CoA after 4 h. The increases in C16:0-CoA and C18:3-CoA suggest FATP2 must necessarily partner with a long chain acyl CoA synthetase (Acsl) to generate C16:0-CoA and C18:3-CoA through vectorial acylation. The very long chain acyl CoA synthetase activity of FATP2 is consistent in the generation of C20:4-CoA and C22:6-CoA coincident with transport from their respective exogenous fatty acids. The trafficking of exogenous fatty acids into phosphatidic acid (PA) and into the major classes of phospholipids (phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylinositol (PI), and phosphatidyserine (PS)) resulted in distinctive profiles, which changed with the expression of FATP2. The

  17. Oxidation of linoleic and palmitic acid in pre-hibernating and hibernating common noctule bats revealed by 13C breath testing.

    Science.gov (United States)

    Rosner, Elisabeth; Voigt, Christian C

    2018-02-19

    Mammals fuel hibernation by oxidizing saturated and unsaturated fatty acids from triacylglycerols in adipocytes, yet the relative importance of these two categories as an oxidative fuel may change during hibernation. We studied the selective use of fatty acids as an oxidative fuel in noctule bats ( Nyctalus noctula ). Pre-hibernating noctule bats that were fed 13 C-enriched linoleic acid (LA) showed 12 times higher tracer oxidation rates compared with conspecifics fed 13 C-enriched palmitic acid (PA). After this experiment, we supplemented the diet of bats with the same fatty acids on five subsequent days to enrich their fat depots with the respective tracer. We then compared the excess 13 C enrichment (excess atom percentage, APE) in breath of bats for torpor and arousal events during early and late hibernation. We observed higher APE values in breath of bats fed 13 C-enriched LA than in bats fed 13 C-enriched PA for both states (torpor and arousal), and also for both periods. Thus, hibernating bats selectively oxidized endogenous LA instead of PA, probably because of faster transportation rates of polyunsaturated fatty acids compared with saturated fatty acids. We did not observe changes in APE values in the breath of torpid animals between early and late hibernation. Skin temperature of torpid animals increased by 0.7°C between early and late hibernation in bats fed PA, whereas it decreased by -0.8°C in bats fed LA, highlighting that endogenous LA may fulfil two functions when available in excess: serving as an oxidative fuel and supporting cell membrane functionality. © 2018. Published by The Company of Biologists Ltd.

  18. D:L-Amino Acid Modeling Reveals Fast Microbial Turnover of Days to Months in the Subsurface Hydrothermal Sediment of Guaymas Basin

    Directory of Open Access Journals (Sweden)

    Mikkel H. Møller

    2018-05-01

    Full Text Available We investigated the impact of temperature on the microbial turnover of organic matter (OM in a hydrothermal vent system in Guaymas Basin, by calculating microbial bio- and necromass turnover times based on the culture-independent D:L-amino acid model. Sediments were recovered from two stations near hydrothermal mounds (<74°C and from one cold station (<9°C. Cell abundance at the two hydrothermal stations dropped from 108 to 106 cells cm-3 within ∼5 m of sediment depth resulting in a 100-fold lower cell number at this depth than at the cold site where numbers remained constant at 108 cells cm-3 throughout the recovered sediment. There were strong indications that the drop in cell abundance was controlled by decreasing OM quality. The quality of the sedimentary OM was determined by the diagenetic indicators %TAAC (percentage of total organic carbon present as amino acid carbon, %TAAN (percentage of total nitrogen present as amino acid nitrogen, aspartic acid:β-alanine ratios, and glutamic acid:γ-amino butyric acid ratios. All parameters indicated that the OM became progressively degraded with increasing sediment depth, and the OM in the hydrothermal sediment was more degraded than in the uniformly cold sediment. Nonetheless, the small community of microorganisms in the hydrothermal sediment demonstrated short turnover times. The modeled turnover times of microbial bio- and necromass in the hydrothermal sediments were notably faster (biomass: days to months; necromass: up to a few hundred years than in the cold sediments (biomass: tens of years; necromass: thousands of years, suggesting that temperature has a significant influence on the microbial turnover rates. We suggest that short biomass turnover times are necessary for maintance of essential cell funtions and to overcome potential damage caused by the increased temperature.The reduced OM quality at the hyrothemal sites might thus only allow for a small population size of microorganisms.

  19. Interactions between stepwise-eluted sub-fractions of fulvic acids and protons revealed by fluorescence titration combined with EEM-PARAFAC.

    Science.gov (United States)

    Song, Fanhao; Wu, Fengchang; Guo, Fei; Wang, Hao; Feng, Weiying; Zhou, Min; Deng, Yanghui; Bai, Yingchen; Xing, Baoshan; Giesy, John P

    2017-12-15

    In aquatic environments, pH can control environmental behaviors of fulvic acid (FA) via regulating hydrolysis of functional groups. Sub-fractions of FA, eluted using pyrophosphate buffers with initial pHs of 3.0 (FA 3 ), 5.0 (FA 5 ), 7.0 (FA 7 ), 9.0 (FA 9 ) and 13.0 (FA 13 ), were used to explore interactions between the various, operationally defined, FA fractions and protons, by use of EEM-PARAFAC analysis. Splitting of peaks (FA 3 and FA 13 ), merging of peaks (FA 7 ), disappearance of peaks (FA 9 and FA 13 ), and red/blue-shifting of peaks were observed during fluorescence titration. Fulvic-like components were identified from FA 3 -FA 13 , and protein-like components were observed in fractions FA 9 and FA 13 . There primary compounds (carboxylic-like, phenolic-like, and protein-like chromophores) in PARAFAC components were distinguished based on acid-base properties. Dissociation constants (pK a ) for fulvic-like components with proton ranged from 2.43 to 4.13 in an acidic pH and from 9.95 to 11.27 at basic pH. These results might be due to protonation of di-carboxylate and phenolic functional groups. At basic pH, pK a values of protein-like components (9.77-10.13) were similar to those of amino acids. However, at acidic pH, pK a values of protein-like components, which ranged from 3.33 to 4.22, were 1-2units greater than those of amino acids. Results presented here, will benefit understanding of environmental behaviors of FA, as well as interactions of FA with environmental contaminants. Copyright © 2017 Elsevier B.V. All rights reserved.

  20. Conversion of a moderately rewetted fen to a shallow lake - implications for net CO2 exchange

    Science.gov (United States)

    Koebsch, Franziska; Glatzel, Stephan; Hofmann, Joachim; Forbrich, Inke; Jurasinski, Gerald

    2013-04-01

    Extensive rewetting projects to re-establish the natural carbon (C) sequestration function of degraded peatlands are currently taking place in Europe and North-America. Year-round flooding provides a robust measure to prevent periods of drought that are associated with ongoing peat mineralization and to initiate the accumulation of new organic matter. Here, we present measurements of net carbon dioxide (CO2) exchange during the gradual conversion of a moderately rewetted fen to a shallow lake. When we started our measurements in 2009, mean growing season water level (MWGL) was 0 cm. In 2010 the site was flooded throughout the year with MWGL of 36 cm. Extraordinary strong rainfalls in July 2011 resulted in a further increase of MWGL to 56 cm. Measurements of net ecosystem exchange (NEE) were conducted during growing seasons (May-October) using the Eddy Covariance method. Information about vegetation vitality was deduced from the enhanced vegetation index (EVI) based on MODIS data. Ecosystem respiration (Reco) and gross ecosystem production (GEP) were high during vegetation period 2009 (1273.4 and -1572.1 g CO2-C m-2), but decreased by 61 and 46% respectively when the fen was flooded throughout 2010. Under water-logged conditions, heterotrophic respiration declines and gas exchange is limited. Moreover, flooding is a severe stress factor for plants and decreases autotrophic respiration and photosynthesis. However, in comparison to 2010, rates of Reco and GEP doubled during the beginning of growing season 2011, indicating plastic response strategies of wetland plants to flooding. Presumably, plants were not able to cope with the further increase of water levels to up to 120 cm in June/July 2011, resulting in another drop of GEP and Reco. The effects of plant vitality on GEP were confirmed by the remote sensed vegetation index. Throughout all three growing seasons, the fen was a distinct net CO2 sink (2009: -333.3±12.3, 2010: -294.1±8.4, -352.4±5.1 g CO2-C m-2

  1. The response of soil organic carbon of a rich fen peatland in interior Alaska to projected climate change.

    Science.gov (United States)

    Fan, Zhaosheng; David McGuire, Anthony; Turetsky, Merritt R; Harden, Jennifer W; Michael Waddington, James; Kane, Evan S

    2013-02-01

    It is important to understand the fate of carbon in boreal peatland soils in response to climate change because a substantial change in release of this carbon as CO2 and CH4 could influence the climate system. The goal of this research was to synthesize the results of a field water table manipulation experiment conducted in a boreal rich fen into a process-based model to understand how soil organic carbon (SOC) of the rich fen might respond to projected climate change. This model, the peatland version of the dynamic organic soil Terrestrial Ecosystem Model (peatland DOS-TEM), was calibrated with data collected during 2005-2011 from the control treatment of a boreal rich fen in the Alaska Peatland Experiment (APEX). The performance of the model was validated with the experimental data measured from the raised and lowered water-table treatments of APEX during the same period. The model was then applied to simulate future SOC dynamics of the rich fen control site under various CO2 emission scenarios. The results across these emissions scenarios suggest that the rate of SOC sequestration in the rich fen will increase between year 2012 and 2061 because the effects of warming increase heterotrophic respiration less than they increase carbon inputs via production. However, after 2061, the rate of SOC sequestration will be weakened and, as a result, the rich fen will likely become a carbon source to the atmosphere between 2062 and 2099. During this period, the effects of projected warming increase respiration so that it is greater than carbon inputs via production. Although changes in precipitation alone had relatively little effect on the dynamics of SOC, changes in precipitation did interact with warming to influence SOC dynamics for some climate scenarios. © 2012 Blackwell Publishing Ltd.

  2. The response of soil organic carbon of a rich fen peatland in interior Alaska to projected climate change

    Science.gov (United States)

    Fan, Zhaosheng; McGuire, Anthony David; Turetsky, Merritt R.; Harden, Jennifer W.; Waddington, James Michael; Kane, Evan S.

    2013-01-01

    It is important to understand the fate of carbon in boreal peatland soils in response to climate change because a substantial change in release of this carbon as CO2 and CH4 could influence the climate system. The goal of this research was to synthesize the results of a field water table manipulation experiment conducted in a boreal rich fen into a process-based model to understand how soil organic carbon (SOC) of the rich fen might respond to projected climate change. This model, the peatland version of the dynamic organic soil Terrestrial Ecosystem Model (peatland DOS-TEM), was calibrated with data collected during 2005–2011 from the control treatment of a boreal rich fen in the Alaska Peatland Experiment (APEX). The performance of the model was validated with the experimental data measured from the raised and lowered water-table treatments of APEX during the same period. The model was then applied to simulate future SOC dynamics of the rich fen control site under various CO2 emission scenarios. The results across these emissions scenarios suggest that the rate of SOC sequestration in the rich fen will increase between year 2012 and 2061 because the effects of warming increase heterotrophic respiration less than they increase carbon inputs via production. However, after 2061, the rate of SOC sequestration will be weakened and, as a result, the rich fen will likely become a carbon source to the atmosphere between 2062 and 2099. During this period, the effects of projected warming increase respiration so that it is greater than carbon inputs via production. Although changes in precipitation alone had relatively little effect on the dynamics of SOC, changes in precipitation did interact with warming to influence SOC dynamics for some climate scenarios.

  3. Compostos fenólicos totais, atividade antioxidante e antifúngica demultimisturas enriquecidas com a microalga Spirulina platensis

    OpenAIRE

    Bierhals, Vânia da Silva; Machado, Vanessa Goulart; Echevenguá, Walesca Oliveira; Costa, Jorge Alberto Vieira; Furlong, Eliana Badiale

    2009-01-01

    Com o objetivo de avaliar o conteúdo fenólico e as atividades antioxidantes e antifúngicas de multimisturas enriquecidas com Spirulina platensis, foram formuladas quatro multimisturas com farelo de arroz ou trigo, duas contendo Spirulina platensis e duas com sementes de girassol. Os compostos fenólicos foram estimados pela técnica de Folin-Ciocalteau. A atividade antioxidante foi avaliada por meio de inibição do radical livre DPPH e a atividade antifúngica foi analisada por meio de ensaio de ...

  4. Los fenómenos psicológicos no investigados en la comunicación educativa

    OpenAIRE

    Ortiz-Torres, Emilio Alberto

    2017-01-01

    Propósito: el artículo tiene por objetivo valorar la importancia del estudio científico de los fenómenos psicológicos la sugestión, la percepción interpersonal y el rumor, los cuales inciden en la comunicación educativa. Tema: el tema que se trabaja es la existencia e influencia de dichos fenómenos subjetivos en los diferentes contextos formativos donde se desarrolla la comunicación interpersonal. Desarrollo: se realiza un análisis teórico sobre la comunicación educativa como concepto interdi...

  5. Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli

    DEFF Research Database (Denmark)

    Seo, Sang Woo; Kim, Donghyuk; O'Brien, Edward J.

    2015-01-01

    The regulators GadE, GadW and GadX (which we refer to as GadEWX) play a critical role in the transcriptional regulation of the glutamate-dependent acid resistance (GDAR) system in Escherichia coli K-12 MG1655. However, the genome-wide regulatory role of GadEWX is still unknown. Here we comprehens...

  6. Investigations on dendrimer space reveal solid and liquid tumor growth-inhibition by original phosphorus-based dendrimers and the corresponding monomers and dendrons with ethacrynic acid motifs.

    Science.gov (United States)

    El Brahmi, Nabil; Mignani, Serge M; Caron, Joachim; El Kazzouli, Saïd; Bousmina, Mosto M; Caminade, Anne-Marie; Cresteil, Thierry; Majoral, Jean-Pierre

    2015-03-07

    The well-known reactive diuretic ethacrynic acid (EA, Edecrin), with low antiproliferative activities, was chemically modified and grafted onto phosphorus dendrimers and the corresponding simple branched phosphorus dendron-like derivatives affording novel nanodevices showing moderate to strong antiproliferative activities against liquid and solid tumor cell lines, respectively.

  7. Chemical structure changes in coals after low-temperature oxidation and demineralization by acid treatment as revealed by high resolution solid state 13C NMR

    International Nuclear Information System (INIS)

    Tekely, P.; Nicole, D.; Delpuech, J.-J.; Totino, E.; Muller, J.F.

    1987-01-01

    13 C CP/MAS NMR has been used for characterization of chemical structure changes in coals after low-temperature oxidation and prolonged demineralization by acid treatment. In both cases the changes take place mainly in the aliphatic part of coal molecules. 21 refs.; 3 figs.; 2 tabs

  8. Importance of ice algae and pelagic phytoplankton as food sources revealed by fatty acid trophic markers in a keystone species (Mytilus trossulus) from the High Arctic

    DEFF Research Database (Denmark)

    Thyrring, Jakob; Tremblay, Réjean; Sejr, Mikael Kristian

    2017-01-01

    The Arctic is characterized by strong seasonality in sea ice extent and temperature. To survive seasonal changes, species have different coping mechanisms. However, knowledge of how intertidal species cope with seasonality remains limited. To study this problem, we analyzed the fatty acid composi...

  9. Transcriptional analysis of porcine intestinal mucosa infected with Salmonella Typhimurium revealed a massive inflammatory response and disruption of bile acid absorption in ileum

    DEFF Research Database (Denmark)

    Uribe, Juber Herrera; Collado-Romero, Melania; Zaldívar-López, Sara

    2016-01-01

    -regulated genes of the FXR pathway (e.g., NR1H4, FABP6, APOA1, SLC10A2), indicating disruption of the bile acid absorption in ileum. This result was confirmed by decreased high-density lipoprotein cholesterol in serum of infected pigs. Ileal inflammatory gene expression changes peaked at 2 dpi and tended...

  10. Fe-N and (Fe, Ni)-N Fine Powders for Magnetic Recording

    International Nuclear Information System (INIS)

    Chen Ziyu; Li Fashen

    1998-01-01

    Combining Moessbauer spectroscopy with magnetic property measurement, we have studied Fe-N and (Fe, Ni)-N powders for magnetic recording. The typical particles of the core (α-Fe)/shell (γ'-Fe 4 N) structure have been successfully prepared. All the products are stabilized in a multi-organic solution. It has been found that the coercivity can be changed from 300 to 800 Oe by adjusting the shape of the particles. The special saturation magnetization of the particles can be adjusted from 120 to 180emu/g and their chemical stability is improved by substituting nickel for iron in γ'-Fe 4 N. Following experiments for corrosion resistance, it is expected that (Fe, Ni)-N and the core/shell particles will be applied as recording media in the near future

  11. Fe-N and (Fe, Ni)-N Fine Powders for Magnetic Recording

    Energy Technology Data Exchange (ETDEWEB)

    Chen Ziyu; Li Fashen [Lanzhou University, Department of Physics (China)

    1998-12-15

    Combining Moessbauer spectroscopy with magnetic property measurement, we have studied Fe-N and (Fe, Ni)-N powders for magnetic recording. The typical particles of the core ({alpha}-Fe)/shell ({gamma}'-Fe{sub 4}N) structure have been successfully prepared. All the products are stabilized in a multi-organic solution. It has been found that the coercivity can be changed from 300 to 800 Oe by adjusting the shape of the particles. The special saturation magnetization of the particles can be adjusted from 120 to 180emu/g and their chemical stability is improved by substituting nickel for iron in {gamma}'-Fe{sub 4}N. Following experiments for corrosion resistance, it is expected that (Fe, Ni)-N and the core/shell particles will be applied as recording media in the near future.

  12. Reconstruction of annual carbon dynamics and balance for an oligotrophic pine fen

    Energy Technology Data Exchange (ETDEWEB)

    Alm, J; Silvola, J; Aaltonen, H [Joensuu Univ. (Finland). Dept. of Biology; Talanov, A; Ikkonen, E [Karelian Research Centre of Russian Academy of Sciences (Russian Federation). Inst. of Biology; Nykaenen, H; Martikainen, P J [National Public Health Inst. Kuopio (Finland). Dept. of Environmental Microbiology

    1997-12-31

    Atmospheric carbon dioxide (CO{sub 2}) is bound by mire vegetation in photosynthesis during the growing season, and is re-released by respiration of plants, soil animals and microorganisms consuming dead organic matter. A small proportion of annual primary production may fall below the water table to anoxic conditions and thus escapes the oxidative decomposition. Also from anoxic peat, carbon is released with clear seasonal and spatial variation as methane (CH{sub 4}.). The rate of carbon accumulation in peat depends on the annual inbalance of plant production and litter decomposition. Exchange of CO{sub 2} and CH{sub 4} between peat, vegetation and the atmosphere thus reflects the dynamics of carbon flows in the ecosystem. Net ecosystem CO{sub 2} exchange (PN), total CO{sub 2} release (RTOT) and CH{sub 4} release (D) from different treeless surfaces of low-sedge Sphagnum papillosum pine fen was studied in eastern Finland. (8 refs.)

  13. Effects of peat-winning on the water environment at a sedge fen ecosystem

    International Nuclear Information System (INIS)

    Lundin, L.

    1997-06-01

    Peatlands are used in agriculture and forestry for vegetational growth and in peat-winning for soil improvement, horticulture production and as fuel. A prerequisite in peatland use is drainage, with influences on water conditions in the peatland and in its surroundings. Environmental effects from such peatland use have been investigated at a sedge fen in central Sweden. Groundwater, runoff, water chemistry and streamwater biology were studied during almost 14 years. This period started with a virgin undrained peatland, later being drained for forest production and after a period of seven years intensively drained for peat-winning and with peat harvesting going on for another seven year period with hydrological investigations. Results show a lowered groundwater level, increased runoff and both higher concentrations of most elements and higher leaching from the drained peatland. Biomass and number of individuals of the benthic fauna in streamwater also increased. 7 refs

  14. Effects of peat-winning on the water environment at a sedge fen ecosystem

    International Nuclear Information System (INIS)

    Lundin, L.

    1996-03-01

    Peatlands are used in agriculture and forestry for vegetational growth and in peat-winning for soil improvement, horticulture production and as fuel. A prerequisite in peatland use is drainage, with influences on water conditions in the peatland and its surroundings. Environmental effects from such peatland use have been investigated at a sedge fen in central Sweden. Groundwater, runoff, water chemistry and stream water biology were studied during almost 14 years. This period started with a virgin undrained peatland, later being drained for forest production and after a period of seven years intensively drained for peat-winning and with peat harvesting going on for another seven years period with hydrological investigations. Results show a lowered groundwater level, increased runoff and both higher concentrations of most elements and higher leaching from the drained peatland. Biomass and number of individuals of the benthic fauna in stream water also increased. 7 refs, 7 figs, 2 tabs

  15. Innovative wetland reclamation design case studies : the Suncor fen and pond 1 marsh

    Energy Technology Data Exchange (ETDEWEB)

    Daly, C.A. [Suncor Energy, Fort McMurray, AB (Canada); Price, J.; Rezanezhad, F. [Waterloo Univ., ON (Canada); Rochefort, L.; Graf, M. [Laval Univ., Quebec City, PQ (Canada); Russell, B. [BGC Engineering Inc., Calgary, AB (Canada)

    2010-07-01

    Suncor Energy Inc. is an energy company strategically focused in Canada's Athabasca oil sands region. The company has more than 40 years of experience in pioneering commercial development. This presentation discussed reclamation requirements for Suncor Energy. Reclamation objectives that were addressed in this presentation included operating approvals, biodiversity and meeting stakeholder expectations. Several photographs of reclaimed forest areas were shown along with 5 freshwater wetland types and wetland values. Two innovative wetland reclamation design case studies were also presented, described and illustrated, with particular reference to the Suncor fen and pond 1 marsh. It was concluded that future work will involve finalizing site investigation and designs, as well as construction, vegetation, and monitoring. figs.

  16. Factors Influencing Mesostigmata Mites (Acari, Parasitiformes In The Alkaline Fen Habitats

    Directory of Open Access Journals (Sweden)

    Salmane Ineta

    2015-04-01

    Full Text Available Mesostigmata mite fauna was investigated in soil of one alkaline fen at Apšuciems in the Maritime Lowland in Latvia in 2009. Thirty sample plots were selected in the following way: half of them were located in Brown Bog Rush, Schoenus ferrugineus and half — in Saw-Sedge, Cladium mariscus prevailing habitat. Soil samples were collected using a soil borer. Vegetation cover was described in accordance with Braun-Blanquet classes. Mites were extracted using modified Berlese funnels. In total, more than 28 species were recorded, of them Prozercon kochi and Pergamasus vagabundus were dominant species. Mean density of Mesostigmata mites ranged from 520 to 2140 ind./m2. Mite abundance and distribution between habitats depended on vegetation cover of the vascular plants, while moss cover and soil pH had no significant influence.

  17. Stream characteristics and their implications for the protection of riparian fens and meadows

    DEFF Research Database (Denmark)

    Baattrup-Pedersen, A.; Larsen, S.E.; Andersen, Peter Mejlhede

    2011-01-01

    the influence of stream size, morphology and chemical water characteristics for the distribution of water-dependent terrestrial habitat types, i.e. alkaline fens, periodically inundated meadows and meadows in riparian areas in Denmark using an extensive data set covering a total of 254 stream reaches. A species......1. Running waters, including associated riparian areas, are embraced by international legal frameworks outlining targets for the preservation, protection and improvement of the quality of the environment. Interactions between stream and river processes and riparian habitats have not received much...... attention in the management of stream ecosystems, and integrated measures that consider both the ecological status of streams and rivers (sensu EU Water Framework Directive, WFD) and the conservation status of riparian habitats and species (sensu EU Habitats Directive, HD) are rare. 2. Here, we analysed...

  18. Reconstruction of annual carbon dynamics and balance for an oligotrophic pine fen

    Energy Technology Data Exchange (ETDEWEB)

    Alm, J.; Silvola, J.; Aaltonen, H. [Joensuu Univ. (Finland). Dept. of Biology; Talanov, A.; Ikkonen, E. [Karelian Research Centre of Russian Academy of Sciences (Russian Federation). Inst. of Biology; Nykaenen, H.; Martikainen, P.J. [National Public Health Inst. Kuopio (Finland). Dept. of Environmental Microbiology

    1996-12-31

    Atmospheric carbon dioxide (CO{sub 2}) is bound by mire vegetation in photosynthesis during the growing season, and is re-released by respiration of plants, soil animals and microorganisms consuming dead organic matter. A small proportion of annual primary production may fall below the water table to anoxic conditions and thus escapes the oxidative decomposition. Also from anoxic peat, carbon is released with clear seasonal and spatial variation as methane (CH{sub 4}.). The rate of carbon accumulation in peat depends on the annual inbalance of plant production and litter decomposition. Exchange of CO{sub 2} and CH{sub 4} between peat, vegetation and the atmosphere thus reflects the dynamics of carbon flows in the ecosystem. Net ecosystem CO{sub 2} exchange (PN), total CO{sub 2} release (RTOT) and CH{sub 4} release (D) from different treeless surfaces of low-sedge Sphagnum papillosum pine fen was studied in eastern Finland. (8 refs.)

  19. Cyberbullying : a faceta de um fenómeno em jovens universitários portugueses

    OpenAIRE

    Francisco, Sofia Mateus

    2012-01-01

    Tese de mestrado, Psicologia (Secção de Psicologia da Educação e da Orientação), Universidade de Lisboa, Faculdade de Psicologia, 2012 Com a crescente utilização das novas tecnologias de informação e comunicação (TIC) nascem grandes vantagens para os jovens, mas também a esta utilização acrescem alguns riscos. Um desses riscos diz respeito ao cyberbullying. Assim, o presente estudo pretende dar a conhecer o fenómeno em estudantes do ensino superior, através da aplicação do Questionário de ...

  20. BOREAS TGB-6 Soil Methane Oxidation and Production from NSA BP and Fen Sites

    Science.gov (United States)

    Deck, Bruce; Wahlen, Martin; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor)

    2000-01-01

    The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-6) team collected soil methane measurements at several sites in the Southern Study Area (SSA) and Northern Study Area (NSA). This data set contains soil methane consumption (bacterial CH4 oxidation) and associated C-13 fractionation effects in samples that were collected at various sites in 1994 and 1996 from enclosures (chambers). Methane C-13 data in soil gas samples from the NSA Young Jack Pine (YJP) and Old Jack Pine (OJP) sites for 1994 and 1996 are also given. Additional data on the isotopic composition of methane (carbon and hydrogen isotopes) produced in the NSA beaver ponds and fen bog in 1993 and 1994 are given as well. The data are stored in tabular ASCII files.

  1. Analysis of the LIV system of Campylobacter jejuni reveals alternative roles for LivJ and LivK in commensalism beyond branched-chain amino acid transport.

    Science.gov (United States)

    Ribardo, Deborah A; Hendrixson, David R

    2011-11-01

    Campylobacter jejuni is a leading cause of diarrheal disease in humans and an intestinal commensal in poultry and other agriculturally important animals. These zoonotic infections result in significant amounts of C. jejuni present in the food supply to contribute to disease in humans. We previously found that a transposon insertion in Cjj81176_1038, encoding a homolog of the Escherichia coli LivJ periplasmic binding protein of the leucine, isoleucine, and valine (LIV) branched-chain amino acid transport system, reduced the commensal colonization capacity of C. jejuni 81-176 in chicks. Cjj81176_1038 is the first gene of a six-gene locus that encodes homologous components of the E. coli LIV system. By analyzing mutants with in-frame deletions of individual genes or pairs of genes, we found that this system constitutes a LIV transport system in C. jejuni responsible for a high level of leucine acquisition and, to a lesser extent, isoleucine and valine acquisition. Despite each LIV protein being required for branched-chain amino acid transport, only the LivJ and LivK periplasmic binding proteins were required for wild-type levels of commensal colonization of chicks. All LIV permease and ATPase components were dispensable for in vivo growth. These results suggest that the biological functions of LivJ and LivK for colonization are more complex than previously hypothesized and extend beyond a role for binding and acquiring branched-chain amino acids during commensalism. In contrast to other studies indicating a requirement and utilization of other specific amino acids for colonization, acquisition of branched-chain amino acids does not appear to be a determinant for C. jejuni during commensalism.

  2. Proteome-based systems biology analysis of the diabetic mouse aorta reveals major changes in fatty acid biosynthesis as potential hallmark in diabetes mellitus-associated vascular disease.

    Science.gov (United States)

    Husi, Holger; Van Agtmael, Tom; Mullen, William; Bahlmann, Ferdinand H; Schanstra, Joost P; Vlahou, Antonia; Delles, Christian; Perco, Paul; Mischak, Harald

    2014-04-01

    Macrovascular complications of diabetes mellitus are a major risk factor for cardiovascular morbidity and mortality. Currently, studies only partially described the molecular pathophysiology of diabetes mellitus-associated effects on vasculature. However, better understanding of systemic effects is essential in unraveling key molecular events in the vascular tissue responsible for disease onset and progression. Our overall aim was to get an all-encompassing view of diabetes mellitus-induced key molecular changes in the vasculature. An integrative proteomic and bioinformatics analysis of data from aortic vessels in the low-dose streptozotocin-induced diabetic mouse model (10 animals) was performed. We observed pronounced dysregulation of molecules involved in myogenesis, vascularization, hypertension, hypertrophy (associated with thickening of the aortic wall), and a substantial reduction of fatty acid storage. A novel finding is the pronounced downregulation of glycogen synthase kinase-3β (Gsk3β) and upregulation of molecules linked to the tricarboxylic acid cycle (eg, aspartate aminotransferase [Got2] and hydroxyacid-oxoacid transhydrogenase [Adhfe1]). In addition, pathways involving primary alcohols and amino acid breakdown are altered, potentially leading to ketone-body production. A number of these findings were validated immunohistochemically. Collectively, the data support the hypothesis that in this diabetic model, there is an overproduction of ketone-bodies within the vessels using an alternative tricarboxylic acid cycle-associated pathway, ultimately leading to the development of atherosclerosis. Streptozotocin-induced diabetes mellitus in animals leads to a reduction of fatty acid biosynthesis and an upregulation of an alternative ketone-body formation pathway. This working hypothesis could form the basis for the development of novel therapeutic intervention and disease management approaches.

  3. Fen Eğitiminde Öğrenme Döngüsü Modelleri

    Directory of Open Access Journals (Sweden)

    Yüksel Keleş

    2011-11-01

    Full Text Available Öğrenme döngüleri yapılandırıcı yaklaşımla fen eğitimi için geliştirilmiş modellerdir. Öğrenme döngüsü modelleri birbirini izleyen 3, 5 veya 7 evreden oluşmaktadır, bu evreler birbirinden ayrı ya da doğrusal değildir. Öğrenme döngüsü uygulamalarının yaratıcı ve eleştirel düşünme için öğrencileri teşvik etmesi ve bilime karşı olumlu tutum geliştirilmesi beklenmektedir. Kavramların daha iyi anlaşılmasına ve öğrencilerde ileri düşünme yeteneklerinin gelişmesine yardımcı olacağı düşünülmektedir. Bu makalede 5E ve 7E modellerinin her bir evresindeki öğrenci ve öğretmen rolleri üzerinde durulmaktadır. Model üzerinde gerçekleştirilen çalışmaların sonuçlarına dayanılarak modelin sağlayacağı olası faydalar tartışılmaktadır. Fen eğitiminde öğrenme döngüsü uygulamalarının yaygınlaştırılması amacıyla, öğretmen yetiştirme süreçlerinde öğrenme döngüsü modellerine yer verilmesi önerilmektedir.

  4. Análisis del fenómeno de la violencia contra los ancianos

    Directory of Open Access Journals (Sweden)

    Celín Pérez Nájera

    2010-12-01

    Full Text Available El artículo presenta una revisión bibliográfica sobre el impacto social de la violencia contra los ancianos, desde la óptica criminológica. En el trabajo se utilizó como método investigativo el enfoque dialéctico-materialista de la realidad, que facilitó el engranaje de toda la investigación en diferentes etapas. Las valoraciones generalizadoras y sistematizadoras se elaboraron desde los enfoques modelativo y sistémico-estructural. Luego de analizar la diversidad de conceptos de violencia, se estableció una definición desde una formación social e histórica; existen dos principios que distinguen sus características: uno que la concibe como un fenómeno de carácter social y el teórico-ecológico, que consiste en el empleo de la fuerza física, económica o política, e implica el abuso de poder cómo único método para resolver el conflicto. Así mismo, se examinó el comportamiento de la violencia contra los ancianos en diversos países: España, Estados Unidos, Perú, Brasil, Panamá, Argentina, Colombia, Chile y Cuba. En general, son alarmantes las cifras de incidencia del fenómeno. De igual forma, en Cuba crece la victimización sobre los ancianos. Se aprecia como manifestación fundamental la violencia psicológica o emocional. Aunque existen mecanismos de denuncia, falta de divulgación y sistematicidad de acciones, que permitan enfrentar la incidencia de este mal social, que afecta a dicho grupo de riesgo de la violencia.

  5. Turismo religioso: fenómeno social y económico

    Directory of Open Access Journals (Sweden)

    Sandra Maribel Tobón Perilla

    2013-12-01

    Full Text Available El turismo religioso, como fenómeno social y económico, ha cobrado interés entre académicos y empresarios por las dinámicas que ha generado en las comunidades receptoras de visitantes. Para los primeros, el interés radica en el estudio de las motivaciones, intereses y necesidades espirituales o culturales que parecen haber despertado los centros religiosos; para los segundos, el impacto económico y las oportunidades de rentas adicionales que generan los visitantes, creando nuevas oportunidades de negocios y fuentes de ingresos y empleo para las comunidades aledañas. Este documento hace una revisión a la bibliografía sobre el tema de turismo religioso en el mundo, para lo cual se consultaron las bases de datos ScienceDirect, Jstor, Ebsco, ProQuest y Google Académico, a fin de rastrear las publicaciones más relevantes y estudios empíricos sobre el tema, haciendo un recorrido desde 1963 hasta 2013. Se concluye que el turismo religioso es un fenómeno que tiene su antecedente en el peregrinaje a centros religiosos, pero donde además de las motivaciones, netamente religiosas –ofrecer un sacrificio, obtener un beneficio divino o expiar pecados–, existe un interés cultural, en términos de conocer centros históricos o profundizar sobre las raíces de un credo religioso. Adicionalmente, se observa cómo el turismo religioso se ha convertido en un motor de desarrollo económico de las ciudades receptoras de viajeros a sitios religioso.

  6. El Quijote y el fenómeno del quijotismo (Don Quixote and Quixotism Phenomenon

    Directory of Open Access Journals (Sweden)

    Jesús Ruiz Fernández

    2013-12-01

    Full Text Available Resumen: Estudia el presente artículo el fenómeno del quijotismo, ingrediente de la razón, y, por tanto, del comportamiento humano. Pero distingue entre el error del quijotismo estático y el sano proceder del dinámico. Para ello se vale del concepto de razón vital de Ortega y Gasset, así como del Quijote. Con respecto al primero, amplía la utilización que de la magna obra podía haber hecho y no hizo el ilustre filósofo. Y sobre el segundo, destaca sus insuficiencias de contenido, por no haber alcanzado el quijotismo dinámico, es decir, porque, queriendo criticar el idealismo desmedido del caballero manchego, termina por proponer otro quijote. De cualquier forma, el artículo señala cómo el irónico fenómeno del quijotismo no es un juego, para lo cual discute ciertas interpretaciones recientes del Quijote.Abstract: This article studies Quixotism phenomenon, ingredient of vital reason, and, consequently, of human behaviour. However, it distinguishes between the mistake of static quixotism and the right conduct of the dynamic one. In order to do so, it makes use of Ortega y Gasset's concept of Vital Reason, and Don Quixote’s as well. Concerning the first one, it highlights the insufficiency of its content since it has not fulfilled the dynamic quixotism, that is to say, because, with the intention to criticize La Mancha’s Knight’s excessive idealism, it ends up proposing other quixotic person. Anyway, this article points out how the ironic quixotism phenomenon is not a game, for which reason it discusses certain Don Quixote’s recent interpretations.

  7. Turn on, fade out - methane exchange in a coastal fen over a period of six years after rewetting

    Science.gov (United States)

    Jurasinski, Gerald; Glatzel, Stephan; Hahn, Juliane; Koch, Stefan; Koch, Marian; Koebsch, Franziska

    2016-04-01

    The rewetting of drained peatlands is widely regarded as an adequate measure for the mitigation of greenhouse gas emissions. Therefore, especially in NE Germany, many peatlands are being rewetted. Our knowledge about greenhouse gas exchange associated with rewetting is mainly based on short-term experiments or space-for-time substitutions. These approaches do not consider the transient character of ecosystem acclimatization to flooding by rewetting. Moreover data in this regard on coastal peatland ecosystems are sparse. Here, we present 7 years of data on CH4-exchange in a coastal fen after rewetting by flooding. On the site „Rodewiese", which is located within the NSG "Hütelmoor und Heiligensee" in the Northeast of Rostock, NE Germany, we have established a long term research observatory addressing atmospheric C-exchange. The site is part of the TERENO network. Since summer 2009 we determine CH4 fluxes with closed chambers distributed widely across the study site and CO2-exchange with eddy covariance as well as ancillary data on vegetation, hydrology, and biogeochemistry. This talk addresses the CH4-exchange over time whereas CO2-exchange data are presented by Koebsch et al. in the same session. Rewetting turned the site from a summer dry fen with mean annual water levels of around -0.08m into a shallow lake with water levels up to 0.60m. In the first year after flooding, we observed a substantial die-back of vegetation, especially in stands of Carex acutiformis. Flooding increased methane release rates to extremely high levels of up to 4.3 t ha-1 a-1 for sedge stands and 2.7 t ha-1 a-1 on average, which amounts to 75.6 t ha-1 a-1 in CO2-equivalents. Thereafter, the averaged annual CH4 emissions decreased asymptotically and where at an average of 0.5 t ha-1 a-1 (14 t ha-1 a-1 in CO2-equivalents) in 2015. Factoring in the NEE of the growing season (from Eddy measurements) suggests that the system may be slightly above neutral with respect to the greenhouse

  8. Comparison of complete genome sequences of dog rabies viruses isolated from China and Mexico reveals key amino acid changes that may be associated with virus replication and virulence.

    Science.gov (United States)

    Yu, Fulai; Zhang, Guoqing; Zhong, Xiangfu; Han, Na; Song, Yunfeng; Zhao, Ling; Cui, Min; Rayner, Simon; Fu, Zhen F

    2014-07-01

    Rabies is a global problem, but its impact and prevalence vary across different regions. In some areas, such as parts of Africa and Asia, the virus is prevalent in the domestic dog population, leading to epidemic waves and large numbers of human fatalities. In other regions, such as the Americas, the virus predominates in wildlife and bat populations, with sporadic spillover into domestic animals. In this work, we attempted to investigate whether these distinct environments led to selective pressures that result in measurable changes within the genome at the amino acid level. To this end, we collected and sequenced the full genome of two isolates from divergent environments. The first isolate (DRV-AH08) was from China, where the virus is present in the dog population and the country is experiencing a serious epidemic. The second isolate (DRV-Mexico) was taken from Mexico, where the virus is present in both wildlife and domestic dog populations, but at low levels as a consequence of an effective vaccination program. We then combined and compared these with other full genome sequences to identify distinct amino acid changes that might be associated with environment. Phylogenetic analysis identified strain DRV-AH08 as belonging to the China-I lineage, which has emerged to become the dominant lineage in the current epidemic. The Mexico strain was placed in the D11 Mexico lineage, associated with the West USA-Mexico border clade. Amino acid sequence analysis identified only 17 amino acid differences in the N, G and L proteins. These differences may be associated with virus replication and virulence-for example, the short incubation period observed in the current epidemic in China.

  9. Functional genomics reveals increases in cholesterol biosynthetic genes and highly unsaturated fatty acid biosynthesis after dietary substitution of fish oil with vegetable oils in Atlantic salmon (Salmo salar

    Directory of Open Access Journals (Sweden)

    Bron James E

    2008-06-01

    Full Text Available Abstract Background There is an increasing drive to replace fish oil (FO in finfish aquaculture diets with vegetable oils (VO, driven by the short supply of FO derived from wild fish stocks. However, little is known of the consequences for fish health after such substitution. The effect of dietary VO on hepatic gene expression, lipid composition and growth was determined in Atlantic salmon (Salmo salar, using a combination of cDNA microarray, lipid, and biochemical analysis. FO was replaced with VO, added to diets as rapeseed (RO, soybean (SO or linseed (LO oils. Results Dietary VO had no major effect on growth of the fish, but increased the whole fish protein contents and tended to decrease whole fish lipid content, thus increasing the protein:lipid ratio. Expression levels of genes of the highly unsaturated fatty acid (HUFA and cholesterol biosynthetic pathways were increased in all vegetable oil diets as was SREBP2, a master transcriptional regulator of these pathways. Other genes whose expression was increased by feeding VO included those of NADPH generation, lipid transport, peroxisomal fatty acid oxidation, a marker of intracellular lipid accumulation, and protein and RNA processing. Consistent with these results, HUFA biosynthesis, hepatic β-oxidation activity and enzymic NADPH production were changed by VO, and there was a trend for increased hepatic lipid in LO and SO diets. Tissue cholesterol levels in VO fed fish were the same as animals fed FO, whereas fatty acid composition of the tissues largely reflected those of the diets and was marked by enrichment of 18 carbon fatty acids and reductions in 20 and 22 carbon HUFA. Conclusion This combined gene expression, compositional and metabolic study demonstrates that major lipid metabolic effects occur after replacing FO with VO in salmon diets. These effects are most likely mediated by SREBP2, which responds to reductions in dietary cholesterol. These changes are sufficient to maintain

  10. Trichoplax adhaerens reveals a network of nuclear receptors sensitive to 9-cis-retinoic acid at the base of metazoan evolution

    Czech Academy of Sciences Publication Activity Database

    Novotný, J.F.; Chughtai, A.A.; Kostrouchová, M.; Kostrouchová, V.; Kostrouch, D.; Kaššák, F.; Kaňa, Radek; Schierwater, B.; Kostrouchová, M.; Kostrouch, Z.

    2017-01-01

    Roč. 5, SEP 29 (2017), s. 1-29, č. článku e3789. ISSN 2167-8359 R&D Projects: GA ČR(CZ) GA16-10088S; GA MŠk(CZ) ED2.1.00/19.0392 Institutional support: RVO:61388971 Keywords : Trichoplax adhaerens * RXR * 9-cis retinoic acid Subject RIV: EE - Microbiology, Virology OBOR OECD: Microbiology Impact factor: 2.177, year: 2016

  11. Metabolomic analysis reveals key metabolites related to the rapid adaptation of Saccharomyce cerevisiae to multiple inhibitors of furfural, acetic acid, and phenol.

    Science.gov (United States)

    Wang, Xin; Li, Bing-Zhi; Ding, Ming-Zhu; Zhang, Wei-Wen; Yuan, Ying-Jin

    2013-03-01

    During hydrolysis of lignocellulosic biomass, a broad range of inhibitors are generated, which interfere with yeast growth and bioethanol production. In order to improve the strain tolerance to multiple inhibitors--acetic acid, furfural, and phenol (three representative lignocellulose-derived inhibitors) and uncover the underlying tolerant mechanism, an adaptation experiment was performed in which the industrial Saccharomyces cerevisiae was cultivated repeatedly in a medium containing multiple inhibitors. The adaptation occurred quickly, accompanied with distinct increase in growth rate, glucose utilization rate, furfural metabolism rate, and ethanol yield, only after the first transfer. A similar rapid adaptation was also observed for the lab strains of BY4742 and BY4743. The metabolomic analysis was employed to investigate the responses of the industrial S. cereviaise to three inhibitors during the adaptation. The results showed that higher levels of 2-furoic acid, 2, 3-butanediol, intermediates in glycolytic pathway, and amino acids derived from glycolysis, were discovered in the adapted strains, suggesting that enhanced metabolic activity in these pathways may relate to resistance against inhibitors. Additionally, through single-gene knockouts, several genes related to alanine metabolism, GABA shunt, and glycerol metabolism were verified to be crucial for the resistance to multiple inhibitors. This study provides new insights into the tolerance mechanism against multiple inhibitors, and guides for the improvement of tolerant ethanologenic yeast strains for lignocellulose-bioethanol fermentation.

  12. Modern distribution patterns of snails and plants in the Western Carpathian spring fens: is it a result of historical development?

    Czech Academy of Sciences Publication Activity Database

    Horsák, M.; Hájek, Michal; Dítě, D.; Tichý, L.

    2007-01-01

    Roč. 73, č. 1 (2007), s. 53-60 ISSN 0260-1230 Grant - others:GA AV ČR(CZ) KJB601630501; GA AV ČR(CZ) KJB6163302 Program:KJ Institutional research plan: CEZ:AV0Z60050516 Keywords : Snails * plants * rich fens Subject RIV: EF - Botanics Impact factor: 1.032, year: 2007

  13. Effectiveness of turf stripping as a measure for restoring species-rich fen meadows in suboptimal hydrological conditions

    NARCIS (Netherlands)

    Hoek, van der D.; Heijmans, M.M.P.D.

    2007-01-01

    Most species-rich fen meadows in nature reserves in The Netherlands are acidified due to weaker upwelling of base-rich groundwater. The present study investigated whether and why turf stripping combined with superficial drainage might promote the long-term recovery of such meadows and restore the

  14. Migração internacional de trabalho qualificado e o fenômeno do brain drain no Brasil

    OpenAIRE

    FARIA, Bruna Maia de

    2008-01-01

    Maia de Faria, Bruna; Barrantes Hidalgo, Álvaro. Migração internacional de trabalho qualificado e o fenômeno do brain drain no Brasil. 2008. Dissertação (Mestrado). Programa de Pós-Graduação em Economia, Universidade Federal de Pernambuco, Recife, 2008.

  15. Differences in acid tolerance between Bifidobacterium breve BB8 and its acid-resistant derivative B. breve BB8dpH, revealed by RNA-sequencing and physiological analysis.

    Science.gov (United States)

    Yang, Xu; Hang, Xiaomin; Tan, Jing; Yang, Hong

    2015-06-01

    Bifidobacteria are common inhabitants of the human gastrointestinal tract, and their application has increased dramatically in recent years due to their health-promoting effects. The ability of bifidobacteria to tolerate acidic environments is particularly important for their function as probiotics because they encounter such environments in food products and during passage through the gastrointestinal tract. In this study, we generated a derivative, Bifidobacterium breve BB8dpH, which displayed a stable, acid-resistant phenotype. To investigate the possible reasons for the higher acid tolerance of B. breve BB8dpH, as compared with its parental strain B. breve BB8, a combined transcriptome and physiological approach was used to characterize differences between the two strains. An analysis of the transcriptome by RNA-sequencing indicated that the expression of 121 genes was increased by more than 2-fold, while the expression of 146 genes was reduced more than 2-fold, in B. breve BB8dpH. Validation of the RNA-sequencing data using real-time quantitative PCR analysis demonstrated that the RNA-sequencing results were highly reliable. The comparison analysis, based on differentially expressed genes, suggested that the acid tolerance of B. breve BB8dpH was enhanced by regulating the expression of genes involved in carbohydrate transport and metabolism, energy production, synthesis of cell envelope components (peptidoglycan and exopolysaccharide), synthesis and transport of glutamate and glutamine, and histidine synthesis. Furthermore, an analysis of physiological data showed that B. breve BB8dpH displayed higher production of exopolysaccharide and lower H(+)-ATPase activity than B. breve BB8. The results presented here will improve our understanding of acid tolerance in bifidobacteria, and they will lead to the development of new strategies to enhance the acid tolerance of bifidobacterial strains. Copyright © 2015 Elsevier Ltd. All rights reserved.

  16. Proteomic Analysis of Plasma from California Sea Lions (Zalophus californianus Reveals Apolipoprotein E as a Candidate Biomarker of Chronic Domoic Acid Toxicosis.

    Directory of Open Access Journals (Sweden)

    Benjamin A Neely

    Full Text Available Domoic acid toxicosis (DAT in California sea lions (Zalophus californianus is caused by exposure to the marine biotoxin domoic acid and has been linked to massive stranding events and mortality. Diagnosis is based on clinical signs in addition to the presence of domoic acid in body fluids. Chronic DAT further is characterized by reoccurring seizures progressing to status epilepticus. Diagnosis of chronic DAT is often slow and problematic, and minimally invasive tests for DAT have been the focus of numerous recent biomarker studies. The goal of this study was to retrospectively profile plasma proteins in a population of sea lions with chronic DAT and those without DAT using two dimensional gel electrophoresis to discover whether individual, multiple, or combinations of protein and clinical data could be utilized to identify sea lions with DAT. Using a training set of 32 sea lion sera, 20 proteins and their isoforms were identified that were significantly different between the two groups (p<0.05. Interestingly, 11 apolipoprotein E (ApoE charge forms were decreased in DAT samples, indicating that ApoE charge form distributions may be important in the progression of DAT. In order to develop a classifier of chronic DAT, an independent blinded test set of 20 sea lions, seven with chronic DAT, was used to validate models utilizing ApoE charge forms and eosinophil counts. The resulting support vector machine had high sensitivity (85.7% with 92.3% negative predictive value and high specificity (92.3% with 85.7% positive predictive value. These results suggest that ApoE and eosinophil counts along with machine learning can perform as a robust and accurate tool to diagnose chronic DAT. Although this analysis is specifically focused on blood biomarkers and routine clinical data, the results demonstrate promise for future studies combining additional variables in multidimensional space to create robust classifiers.

  17. Locked Nucleic Acid-Based In Situ Hybridization Reveals miR-7a as a Hypothalamus-Enriched MicroRNA with a Distinct Expression Pattern

    DEFF Research Database (Denmark)

    Herzer, S; Silahtaroglu, A; Meister, B

    2012-01-01

    , a part of the brain that controls vital bodily functions, we employed locked nucleic acid (LNA) - fluorescent in situ hybridization (FISH). The expression pattern of the mature miRNAs miR-7a, miR-7b, miR-137 and miR-153 in mouse brain tissue sections was investigated. Whereas all studied miRNAs were......R-7a expression was particularly prominent in the subfornical organ, suprachiasmatic, paraventricular, periventricular, supraoptic, dorsomedial and arcuate nuclei. Identical expression patterns for miR-7a was seen in mouse and rat hypothalamus. By combining LNA-FISH with immunohistochemistry...

  18. The hydrological and geochemical isolation of a freshwater bog within a saline fen in north-eastern Alberta

    Directory of Open Access Journals (Sweden)

    S.J. Scarlett

    2013-10-01

    Full Text Available In the oil sands development region near Fort McMurray, Alberta, wetlands cover ~62 % of the landscape, and ~95 % of these wetlands are peatlands. A saline fen was studied as a reference site for peatland reclamation. Despite highly saline conditions, a freshwater bog was observed in the path of local saline groundwater flow. The purpose of this study was to identify the hydrological controls that have allowed the development and persistence of a bog in this setting. The presence of bog vegetation and its dilute water chemistry suggest that saline groundwater from the fen rarely enters the bog, which functions predominantly as a groundwater recharge system. Chloride (Cl– and sodium (Na+ were the dominant ions in fen water, with concentrations averaging 5394 and 2307 mg L-1, respectively, while the concentrations in bog water were 5 and 4 mg L-1, respectively. These concentrations were reflected by salinity and electrical conductivity measurements, which in the fen averaged 9.3 ppt, and 15.8 mS cm-1, respectively, and in the bog averaged 0.1 ppt and 0.3 mS cm-1, respectively. A small ridge in the mineral substratum was found at the fen–bog margin, which created a persistent groundwater mound. Under the dry conditions experienced in early summer, groundwater flow was directed away from the bog at a rate of 14.6 mm day-1. The convex water table at the fen-bog margin impeded flow of saline water into the bog and instead directed it around the bog margin. However, the groundwater mound was eliminated during flooding in autumn, when the horizontal hydraulic gradient across the margin became negligible, suggesting the possibility of saline water ingress into the bog under these conditions.

  19. A decade of boreal rich fen greenhouse gas fluxes in response to natural and experimental water table variability

    Science.gov (United States)

    Olefeldt, David; Euskirchen, Eugénie S.; Harden, Jennifer W.; Kane, Evan S.; McGuire, A. David; Waldrop, Mark P.; Turetsky, Merritt R.

    2017-01-01

    Rich fens are common boreal ecosystems with distinct hydrology, biogeochemistry and ecology that influence their carbon (C) balance. We present growing season soil chamber methane emission (FCH4), ecosystem respiration (ER), net ecosystem exchange (NEE) and gross primary production (GPP) fluxes from a 9-years water table manipulation experiment in an Alaskan rich fen. The study included major flood and drought years, where wetting and drying treatments further modified the severity of droughts. Results support previous findings from peatlands that drought causes reduced magnitude of growing season FCH4, GPP and NEE, thus reducing or reversing their C sink function. Experimentally exacerbated droughts further reduced the capacity for the fen to act as a C sink by causing shifts in vegetation and thus reducing magnitude of maximum growing season GPP in subsequent flood years by ~15% compared to control plots. Conversely, water table position had only a weak influence on ER, but dominant contribution to ER switched from autotrophic respiration in wet years to heterotrophic in dry years. Droughts did not cause inter-annual lag effects on ER in this rich fen, as has been observed in several nutrient-poor peatlands. While ER was dependent on soil temperatures at 2 cm depth, FCH4 was linked to soil temperatures at 25 cm. Inter-annual variability of deep soil temperatures was in turn dependent on wetness rather than air temperature, and higher FCH4 in flooded years was thus equally due to increased methane production at depth and decreased methane oxidation near the surface. Short-term fluctuations in wetness caused significant lag effects on FCH4, but droughts caused no inter-annual lag effects on FCH4. Our results show that frequency and severity of droughts and floods can have characteristic effects on the exchange of greenhouse gases, and emphasize the need to project future hydrological regimes in rich fens.

  20. Fen Bilgisi Öğretmen Adaylarının Kimya Bilgilerini Günlük Hayatla İlişkilendirebilme Düzeyleri

    OpenAIRE

    Yadigaroğlu, Yrd. Doç. Dr. Mustafa; DEMİRCİOĞLU, Doç. Dr. Gökhan; DEMİRCİOĞLU, Doç. Dr. Hülya

    2017-01-01

    Fen eğitiminin temel amaçlarındanbiri, öğrencilerin fen okur-yazarı olmalarını sağlayarak onları günlükyaşantılarında karşılaştıkları fen olaylarına anlam vermelerine yardımcıolmaktır. Günlük hayatla ya da bağlamı ile ilişkilendirilmeyen bilgi öğrencininzihninde her zaman eksik olacaktır. Bunun gerçekleştirilmesinde fen dersleriiçerisinde yer alan kimya önemli bir yere sahiptir. Bu düşünceden hareketleçalışmada, fen bilgisi öğretmen adaylarının kimya bilgilerini günlük hayatlailişkilendirebil...

  1. A fluorescence-coupled assay for gamma aminobutyric acid (GABA reveals metabolic stress-induced modulation of GABA content in neuroendocrine cancer.

    Directory of Open Access Journals (Sweden)

    Joseph E Ippolito

    Full Text Available Pathways involved in the synthesis of the neurotransmitter gamma-aminobutyric acid (GABA have been implicated in the pathogenesis of high grade neuroendocrine (NE neoplasms as well as neoplasms from a non-NE lineage. Using The Cancer Genome Atlas, overexpression of the GABA synthetic enzyme, glutamate decarboxylase 1 (GAD1, was found to be associated with decreased disease free-survival in prostate adenocarcinoma and decreased overall survival in clear cell renal cell carcinomas. Furthermore, GAD1 was found to be expressed in castrate-resistant prostate cancer cell lines, but not androgen-responsive cell lines. Using a novel fluorescence-coupled enzymatic microplate assay for GABA mediated through reduction of resazurin in a prostate neuroendocrine carcinoma (PNEC cell line, acid microenvironment-induced stress increased GABA levels while alkaline microenvironment-induced stress decreased GABA through modulation of GAD1 and glutamine synthetase (GLUL activities. Moreover, glutamine but not glucose deprivation decreased GABA through modulation of GLUL. Consistent with evidence in prokaryotic and eukaryotic organisms that GABA synthesis mediated through GAD1 may play a crucial role in surviving stress, GABA may be an important mediator of stress survival in neoplasms. These findings identify GABA synthesis and metabolism as a potentially important pathway for regulating cancer cell stress response as well as a potential target for therapeutic strategies.

  2. Metabolomic Profiling of Post-Mortem Brain Reveals Changes in Amino Acid and Glucose Metabolism in Mental Illness Compared with Controls

    Directory of Open Access Journals (Sweden)

    Rong Zhang

    2016-01-01

    Full Text Available Metabolomic profiling was carried out on 53 post-mortem brain samples from subjects diagnosed with schizophrenia, depression, bipolar disorder (SDB, diabetes, and controls. Chromatography on a ZICpHILIC column was used with detection by Orbitrap mass spectrometry. Data extraction was carried out with m/z Mine 2.14 with metabolite searching against an in-house database. There was no clear discrimination between the controls and the SDB samples on the basis of a principal components analysis (PCA model of 755 identified or putatively identified metabolites. Orthogonal partial least square discriminant analysis (OPLSDA produced clear separation between 17 of the controls and 19 of the SDB samples (R2CUM 0.976, Q2 0.671, p-value of the cross-validated ANOVA score 0.0024. The most important metabolites producing discrimination were the lipophilic amino acids leucine/isoleucine, proline, methionine, phenylalanine, and tyrosine; the neurotransmitters GABA and NAAG and sugar metabolites sorbitol, gluconic acid, xylitol, ribitol, arabinotol, and erythritol. Eight samples from diabetic brains were analysed, six of which grouped with the SDB samples without compromising the model (R2 CUM 0.850, Q2 CUM 0.534, p-value for cross-validated ANOVA score 0.00087. There appears on the basis of this small sample set to be some commonality between metabolic perturbations resulting from diabetes and from SDB.

  3. Impacts of road construction and removal on the hydrologic and geochemical function of a fen peatland

    Science.gov (United States)

    Wells, C. M.; Petrone, R. M.; Sutherland, G.; Price, J. S.

    2015-12-01

    Linear disturbances such as roads cover vast swaths of northeastern Alberta, the majority of which are wetlands with shallow and local hydrologic connections. Thus, the effects of road construction on wetland hydrological pathways can have significant implications on water movement within the region, and by extension the productivity of vegetation communities and carbon sequestration. However, little is known about the effect that roads have on wetland hydrology. In 2013, a gravel road built within a fen peatland was reclaimed to evaluate hydrologic impacts post removal. Prior to removal, ground and surface water flow was obstructed leading to surface ponding, and vegetation mortality was observed on the up-gradient (wet) side of the road. Rebounding of the peat column was observed throughout the fen immediately following road removal in 2013 (maximum of 12 cm, mean of 2 cm), with modest but slightly smaller expansion in 2014. For both years, peat rebound was greatest in areas where the road was removed. Peat physical properties contrasted sharply between the reclaimed road (RR) peat and the adjacent, unimpacted peatland (UP). Surface bulk densities (pb, 0-10 cm) ranged from 0.1-0.25 g cm-3 along the RR compared to 0.02-0.07 g cm-3 for the UP and on average, pb for all depths were lower at the RR compared to the UP. Similar spatial patterns were observed for peat porosity. Correspondingly low horizontal saturated hydraulic conductivities (Kh) were observed along the RR compared to the UP, averaging 5.7x10-4 m s-1 and 1.7x10-3 m s-1, respectively. The local flow system across the RR and thus subsurface flow was impeded by almost half (0.4 m d-1) compared to flow observed within the UP (0.8 m d-1), leading to ponding on the upgradient side. A marked change in hydrophysical properties and ground and surface water flow patterns post road removal has implications for plant reestablishment and restoration and will form the basis of further study.

  4. Compuestos fenólicos del olivo (Olea europea

    Directory of Open Access Journals (Sweden)

    Maestro-Durán, R.

    1994-08-01

    Full Text Available Certain plant properties, such as the colour, the nutritional value, the resistance to microorganisms, the pharmacologic effects and the organoleptic character, are due to the phenolic compounds. It is interesting the study of phenolic compounds from olive because they:

    -Inhibit Gram+ microorganisms, such as Lactobacillus, which are involved in the fermentation of the olive fruit. -Inhibit the activity of cellulases and other enzymes. -Contribute to the stability and organoleptic character of virgin olive oil. -Inhibit the effect of microorganisms involved in the anaerobic depuration of vegetation water. Thus, the phenolic compounds are the major bothersome contaminants of these wastewater. -Have pharmacologic properties (to reduce blood pressure levels. -Are natural antioxidants.

    In the present review we describe the composition of the phenolic compounds from the olive fruit (pulp and seed, the olive oil and its by-products (vegetation water and rape and the olive leaves.

    Ciertas propiedades de las plantas, como el color, valor nutricional, autoprotección contra microorganismos, propiedades farmacológicas o caracteres organolépticos, son debidas a los compuestos fenólicos. Su estudio, en el caso del olivo, es de gran interés por diversas razones:

    -Por su carácter antibiótico, los fenoles de la aceituna inhiben los microorganismos Gram+, como Lactobacillus, necesarios para la fermentación de aceitunas de mesa. -Inhiben la acción de las celulasas y otras enzimas. -Son los responsables de la alta estabilidad de los aceites vírgenes de oliva, así como de alguno de sus caracteres organolépticos. -Inhiben la acción de los microorganismos responsables de la depuración anaerobia de los alpechines y son las sustancias contaminantes de estas aguas residuales cuya degradación para eliminar la DQO presenta más dificultades. -Tienen propiedades

  5. Saturated and unsaturated salt transport in peat from a constructed fen

    Science.gov (United States)

    Simhayov, Reuven B.; Weber, Tobias K. D.; Price, Jonathan S.

    2018-02-01

    The underlying processes governing solute transport in peat from an experimentally constructed fen peatland were analyzed by performing saturated and unsaturated solute breakthrough experiments using Na+ and Cl- as reactive and non-reactive solutes, respectively. We tested the performance of three solute transport models, including the classical equilibrium convection-dispersion equation (CDE), a chemical non-equilibrium one-site adsorption model (OSA) and a model to account for physical non-equilibrium, the mobile-immobile (MIM) phases. The selection was motivated by the fact that the applicability of the MIM in peat soils finds a wide consensus. However, results from inverse modeling and a robust statistical evaluation of this peat provide evidence that the measured breakthrough of the conservative tracer, Cl-, could be simulated well using the CDE. Furthermore, the very high Damköhler number (which approaches infinity) suggests instantaneous equilibration between the mobile and immobile phases underscoring the redundancy of the MIM approach for this particular peat. Scanning electron microscope images of the peat show the typical multi-pore size distribution structures have been homogenized sufficiently by decomposition, such that physical non-equilibrium solute transport no longer governs the transport process. This result is corroborated by the fact the soil hydraulic properties were adequately described using a unimodal van Genuchten-Mualem model between saturation and a pressure head of ˜ -1000 cm of water. Hence, MIM was not the most suitable choice, and the long tailing of the Na+ breakthrough curve was caused by chemical non-equilibrium. Successful description was possible using the OSA model. To test our results for the unsaturated case, we conducted an unsaturated steady-state evaporation experiment to drive Na+ and Cl- transport. Using the parameterized transport models from the saturated experiments, we could numerically simulate the unsaturated

  6. Methane Exchange in a Coastal Fen in the First Year after Flooding - A Systems Shift

    Science.gov (United States)

    Hahn, Juliane; Köhler, Stefan; Glatzel, Stephan; Jurasinski, Gerald

    2015-01-01

    Background Peatland restoration can have several objectives, for example re-establishing the natural habitat, supporting unique biodiversity attributes or re-initiating key biogeochemical processes, which can ultimately lead to a reduction in greenhouse gas (GHG) emissions. Every restoration measure, however, is itself a disturbance to the ecosystem. Methods Here, we examine an ecosystem shift in a coastal fen at the southern Baltic Sea which was rewetted by flooding. The analyses are based on one year of bi-weekly closed chamber measurements of methane fluxes gathered at spots located in different vegetation stands. During measurement campaigns, we recorded data on water levels, peat temperatures, and chemical properties of peat water. In addition we analyzed the first 20 cm of peat before and after flooding for dry bulk density (DBD), content of organic matter and total amounts of carbon (C), nitrogen (N), sulfur (S), and other nutrients. Results Rewetting turned the site from a summer dry fen into a shallow lake with water levels up to 0.60 m. We observed a substantial die-back of vegetation, especially in stands of sedges (Carex acutiformis Ehrh). Concentrations of total organic carbon and nitrogen in the peat water, as well as dry bulk density and concentrations of C, N and S in the peat increased. In the first year after rewetting, the average annual exchange of methane amounted to 0.26 ± 0.06 kg m-2. This is equivalent to a 190-times increase in methane compared to pre-flooding conditions. Highest methane fluxes occurred in sedge stands which suffered from the heaviest die-back. None of the recorded environmental variables showed consistent relationships with the amounts of methane exchanged. Conclusions Our results suggest that rewetting projects should be monitored not only with regard to vegetation development but also with respect to biogeochemical conditions. Further, high methane emissions that likely occur directly after rewetting by flooding should

  7. Feminización del fenómeno migratorio ecuatoriano

    Directory of Open Access Journals (Sweden)

    Jorge Moreno Egas

    2009-12-01

    Full Text Available La crítica situación económica y política del Ecuador en la última década del XX fue la coyuntura que agudizó el fenómeno migratorio presente desde mediados de ese siglo. América Latina, Norte América y en los últimos tiempos Europa, particularmente España e Italia son los lugares de destino de los ecuatorianos. Este hecho se caracteriza por ser amplio y diverso. Los migrantes provienen de todas las clases sociales, es multigeneracional y particularmente femenino. Los efectos de la crisis y situaciones particulares de violencia y marginación han obligado a las mujeres a buscar alternativas de trabajo fuera del país. La feminización del fenómeno migratorio, dentro o fuera de la legalidad, más allá de su lado bueno, - remesas para la familia que queda a tras, éxitos personales en los lugares de acogida y la perspectiva de reunificación de la familia -, coloca a las migrantes en situaciones de vulnerabilidad, origina rupturas familiares y pone en riesgo la seguridad de los niños por privárseles del papel protagónico que las madres cumplen en su crianza.___________________ABSTRACT:Ecuador’s critical economic and political situation during the last decade of the Twentieth Century was the trend that worsened the emigration phenomenon present from the middle of the century. Latin America, North America and, lately, Europe, particularly Spain and Italy, are the destinations for Ecuadorians. This fact is characterized by being broad and diverse. Emigrants come from all social classes, are multi-generational and particularly female. The effects of the crisis and the specific situations of violence and marginalization have forced women to seek options for work outside the country. The feminization of the emigration phenomenon inside or outside the law other than its good side – remittances to the family that stayed behind, personal success in the places where they are received and the perspective of reuniting with family

  8. Mutagenesis Analysis Reveals Distinct Amino Acids of the Human Serotonin 5-HT2C Receptor Underlying the Pharmacology of Distinct Ligands.

    Science.gov (United States)

    Liu, Yue; Canal, Clinton E; Cordova-Sintjago, Tania C; Zhu, Wanying; Booth, Raymond G

    2017-01-18

    While exploring the structure-activity relationship of 4-phenyl-2-dimethylaminotetralins (PATs) at serotonin 5-HT 2C receptors, we discovered that relatively minor modification of PAT chemistry impacts function at 5-HT 2C receptors. In HEK293 cells expressing human 5-HT 2C-INI receptors, for example, (-)-trans-3'-Br-PAT and (-)-trans-3'-Cl-PAT are agonists regarding Gα q -inositol phosphate signaling, whereas (-)-trans-3'-CF 3 -PAT is an inverse agonist. To investigate the ligand-receptor interactions that govern this change in function, we performed site-directed mutagenesis of 14 amino acids of the 5-HT 2C receptor based on molecular modeling and reported G protein-coupled receptor crystal structures, followed by molecular pharmacology studies. We found that S3.36, T3.37, and F5.47 in the orthosteric binding pocket are critical for affinity (K i ) of all PATs tested, we also found that F6.44, M6.47, C7.45, and S7.46 are primarily involved in regulating EC/IC 50 functional potencies of PATs. We discovered that when residue S5.43, N6.55, or both are mutated to alanine, (-)-trans-3'-CF 3 -PAT switches from inverse agonist to agonist function, and when N6.55 is mutated to leucine, (-)-trans-3'-Br-PAT switches from agonist to inverse agonist function. Notably, most point-mutations that affected PAT pharmacology did not significantly alter affinity (K D ) of the antagonist radioligand [ 3 H]mesulergine, but every mutation tested negatively impacted serotonin binding. Also, amino acid mutations differentially affected the pharmacology of other commercially available 5-HT 2C ligands tested. Collectively, the data show that functional outcomes shared by different ligands are mediated by different amino acids and that some 5-HT 2C receptor residues important for pharmacology of one ligand are not necessarily important for another ligand.

  9. Transcriptome analysis of H2O2-treated wheat seedlings reveals a H2O2-responsive fatty acid desaturase gene participating in powdery mildew resistance.

    Directory of Open Access Journals (Sweden)

    Aili Li

    Full Text Available Hydrogen peroxide (H(2O(2 plays important roles in plant biotic and abiotic stress responses. However, the effect of H(2O(2 stress on the bread wheat transcriptome is still lacking. To investigate the cellular and metabolic responses triggered by H(2O(2, we performed an mRNA tag analysis of wheat seedlings under 10 mM H(2O(2 treatment for 6 hour in one powdery mildew (PM resistant (PmA and two susceptible (Cha and Han lines. In total, 6,156, 6,875 and 3,276 transcripts were found to be differentially expressed in PmA, Han and Cha respectively. Among them, 260 genes exhibited consistent expression patterns in all three wheat lines and may represent a subset of basal H(2O(2 responsive genes that were associated with cell defense, signal transduction, photosynthesis, carbohydrate metabolism, lipid metabolism, redox homeostasis, and transport. Among genes specific to PmA, 'transport' activity was significantly enriched in Gene Ontology analysis. MapMan classification showed that, while both up- and down- regulations were observed for auxin, abscisic acid, and brassinolides signaling genes, the jasmonic acid and ethylene signaling pathway genes were all up-regulated, suggesting H(2O(2-enhanced JA/Et functions in PmA. To further study whether any of these genes were involved in wheat PM response, 19 H(2O(2-responsive putative defense related genes were assayed in wheat seedlings infected with Blumeria graminis f. sp. tritici (Bgt. Eight of these genes were found to be co-regulated by H(2O(2 and Bgt, among which a fatty acid desaturase gene TaFAD was then confirmed by virus induced gene silencing (VIGS to be required for the PM resistance. Together, our data presents the first global picture of the wheat transcriptome under H(2O(2 stress and uncovers potential links between H(2O(2 and Bgt responses, hence providing important candidate genes for the PM resistance in wheat.

  10. D:L-Amino Acid Modeling Reveals Fast Microbial Turnover of Days to Months in the Subsurface Hydrothermal Sediment of Guaymas Basin.

    Science.gov (United States)

    Møller, Mikkel H; Glombitza, Clemens; Lever, Mark A; Deng, Longhui; Morono, Yuki; Inagaki, Fumio; Doll, Mechthild; Su, Chin-Chia; Lomstein, Bente A

    2018-01-01

    We investigated the impact of temperature on the microbial turnover of organic matter (OM) in a hydrothermal vent system in Guaymas Basin, by calculating microbial bio- and necromass turnover times based on the culture-independent D:L-amino acid model. Sediments were recovered from two stations near hydrothermal mounds (community of microorganisms in the hydrothermal sediment demonstrated short turnover times. The modeled turnover times of microbial bio- and necromass in the hydrothermal sediments were notably faster (biomass: days to months; necromass: up to a few hundred years) than in the cold sediments (biomass: tens of years; necromass: thousands of years), suggesting that temperature has a significant influence on the microbial turnover rates. We suggest that short biomass turnover times are necessary for maintance of essential cell funtions and to overcome potential damage caused by the increased temperature.The reduced OM quality at the hyrothemal sites might thus only allow for a small population size of microorganisms.

  11. Salicylic and jasmonic acid pathways are necessary for defence against Dickeya solani as revealed by a novel method for Blackleg disease screening of in vitro grown potato.

    Science.gov (United States)

    Burra, D D; Mühlenbock, P; Andreasson, E

    2015-09-01

    Potato is major crop ensuring food security in Europe, and blackleg disease is increasingly causing losses in yield and during storage. Recently, one blackleg pathogen, Dickeya solani has been shown to be spreading in Northern Europe that causes aggressive disease development. Currently, identification of tolerant commercial potato varieties has been unsuccessful; this is confounded by the complicated etiology of the disease and a strong environmental influence on disease development. There is currently a lack of efficient testing systems. Here, we describe a system for quantification of blackleg symptoms on shoots of sterile in vitro potato plants, which saves time and space compared to greenhouse and existing field assays. We found no evidence for differences in infection between the described in vitro-based screening method and existing greenhouse assays. This system facilitates efficient screening of blackleg disease response of potato plants independent of other microorganisms and variable environmental conditions. We therefore used the in vitro screening method to increase understanding of plant mechanisms involved in blackleg disease development by analysing disease response of hormone- related (salicylic and jasmonic acid) transgenic potato plants. We show that both jasmonic (JA) and salicylic (SA) acid pathways regulate tolerance to blackleg disease in potato, a result unlike previous findings in Arabidopsis defence response to necrotrophic bacteria. We confirm this by showing induction of a SA marker, pathogenesis-related protein 1 (StPR1), and a JA marker, lipoxygenase (StLOX), in Dickeya solani infected in vitro potato plants. We also observed that tubers of transgenic potato plants were more susceptible to soft rot compared to wild type, suggesting a role for SA and JA pathways in general tolerance to Dickeya. © 2015 German Botanical Society and The Royal Botanical Society of the Netherlands.

  12. Leaf-litter microfungal community on poor fen plant debris in Torfy Lake area (Central Poland

    Directory of Open Access Journals (Sweden)

    Mateusz Wilk

    2014-06-01

    Full Text Available The purpose of this study was to initially evaluate the species diversity of microfungi growing on litter of 15 plant species occurring on the poor fen and neighbouring area of the Torfy Lake, Masovian voivodeship, Poland. The lake is located near the planned road investment (construction of the Warsaw southern express ring road S2. The place is biologically valuable as there are rare plant communities from Rhynchosporion albae alliance protected under the Habitats Directive adopted by the European Union. On the examined plant debris 73 taxa of fungi were recorded (3 basidiomycetes, 13 ascomycetes, 2 zygomycetes, 43 anamorphic ascomycetes, 12 unidentified. Two of them, Dicranidion sp. and Wentiomyces sp. are presented here as new to Poland. Among the plant species examined, the litter of Rhododendron tomentosum harbored the highest number of fungal taxa (16. The highest percents of substrate-specific microfungi (i.e. recorded only on one plant species was noted on R. tomentosum (81.3 %, and Pteridium aquilinum (75%. It is emphasized that the lake area should be protected not only because of rare plant community but also because of the uniqueness and diversity of mycobiota.

  13. Characterizing Early Succession Following Wildfires at Different Severities in Boreal Bog and Fen Peatlands

    Science.gov (United States)

    Ernst, E. J.; Bourgeau-Chavez, L. L.; Kane, E. S.; Wagenbrenner, J. W.; Endres, S.

    2016-12-01

    The Arctic-boreal region is experiencing changes in climate, trending toward warmer summers, resulting in a greater occurrence of wildfires with longer burning periods and higher intensities. Drought-like conditions have dried surface fuels, leading to a higher probability of ignition, even in lowland peatlands. Previous work has been done to characterize post-fire succession rates in Arctic-boreal upland sites, but much less is known of fire effects and early successional dynamics in lowlands. Wildland fires are the number one disturbance in Canada's Northwest Territories (NWT), which characteristically burn at high intensities with large flame fronts, and result in some of the biggest wildfires in the world. Areas surrounding the Great Slave Lake, NWT—including parts of the Taiga Plains, Taiga Shield, and Boreal Plains ecozones—experienced exceptional wildfire activity in 2014 and 2015. We characterized burn severity of the bog and fen peat surface and canopy layers at several burned sites. To determine if the severe ground or crown wildfires were stand-replacing events, we characterized post-fire vegetation in peatlands in 2015 and 2016 based on seedling regeneration. We stratified sites according to estimated water residence times across the three ecozones and made comparisons between data collected at the same sites across years. This work adds much needed context for post-fire succession in boreal peatland ecosystems, as the susceptibility of these systems to burning will continue to increase with a warming climate.

  14. El fenómeno del Greenwashing y su impacto sobre los consumidores

    Directory of Open Access Journals (Sweden)

    Moritz Hallama

    2011-07-01

    Full Text Available Hoy en día y mediante una publicidad sofisticada, las empresas tratan de proyectar una imagen respetuosa con el medio ambiente en la percepción de los consumidores. Esta imagen no refleja necesariamente la realidad. Se habla de “Greenwashing” cuando una empresa utiliza la ampliación selectiva de información medioambiental positiva con la finalidad de causar una imagen distorsionada donde los aspectos positivos predominan mas del debido. Este artículo pretende de abordar este fenómeno y avaluar su existencia, importancia y el efecto causado sobre los consumidores mediante el diseño de una metodología piloto para la investigación, aplicando ésta a una muestra de estudiantes. Los resultados indican que la imagen transmitida por la publicidad de cinco grandes empresas seleccionadas contrasta con ejemplos de mala gestión y que esta manipulación influye en la percepción que tiene la muestra encuestada. Los estudiantes de Ciencias Ambientales encuestados presentan ser ligeramente más resistentes contra el Greenwashing debido a su formación, pero también incorporan mayoritariamente el discurso oficial procedente de las relaciones públicas empresariales.

  15. Efectos ecológicos del fenómeno ENOS en Colombia

    Directory of Open Access Journals (Sweden)

    Yesid Carvajal

    2014-06-01

    Full Text Available El fenómeno ENOS, tiene un sustancial efecto sobre las variaciones del clima a nivel mundial; por lo tanto, no sorprende que sus efectos tengan un impacto ecológico y socioeconómico fuerte, alterando la seguridad alimentaria de los países a nivel mundial. Ante este panorama, es comprensible que haya despertado el mayor interés mundial, no sólo en los especialistas en meteorología y oceanografía sino también entre biólogos, ecólogos, físicos, matemáticos, agrónomos, hidrólogos, economistas, sociólogos y planificadores, entre otros. En el presente documento, se muestra algunos de los principales efectos ecológicos en Colombia durante las fases extremas cálida (El Niño y fría (La Niña, indicando que es una necesidad urgente, orientar la investigación en sus causas, consecuencias e impactos.

  16. Modeling thermodynamics of Fe-N phases; characterisation of e-Fe2N1-z

    DEFF Research Database (Denmark)

    Pekelharing, M.I.; Böttger, A.; Somers, Marcel A.J.

    1999-01-01

    In order to arrive at modeling the thermodynamics of Fe-N phases, including long-range (LRO) and short-range ordering (SRO) of the N atoms, it is important to understand the role of N interstitially dissolved in an Fe-host lattice. The crystal structure of -Fe2N1-z consists of an h.c.p. iron...... sublattice and a hexagonal nitrogen sublattice formed by octahedral interstices of the Fe sublattice [1]. Two ground-state structures have been proposed for the ordered arrangement of the N atoms on their own sublattice [1], which were shown to be thermodynamically favourable [2]: configuration A for Fe2N1...... investigated with X-ray diffraction (XRD) and Mössbauer spectroscopy. A thermodynamic model accounting for the two configurations of LRO of the N atoms [2,3] was fitted to the N-absorption isotherm at 723 K and resulted in the occupancies of the sites of the nitrogen sublattice. A miscibility gap between...

  17. Una mirada al fenómeno de la violencia escolar en Costa Rica

    Directory of Open Access Journals (Sweden)

    Leonel Arias-Sandoval

    2009-06-01

    En el actual contexto educativo, padres de familia, estudiantes, docentes, medios de comunicación y demás sectores de la sociedad costarricense, manifiestan su preocupación ante el problema de la violencia escolar, fenómeno social que ha venido en aumento en los últimos años. Sus manifestaciones se perciben por medio de conductas de maltrato, intimidación, agresión verbal o física entre jóvenes, y que se construye por medio de prácticas culturales. De ahí que, para comprender este problema, se debe reflexionar acerca de las posibles causas, teniendo en cuenta el contexto en el cual se desarrolla la convivencia social en cada centro educativo. Algunas de las manifestaciones de violencia tienen su origen en la familia, en la comunidad, en la imitación de patrones de conducta y en la influencia de los medios de información de masa. Además, estos comportamientos son potenciados por el modelo curricular vigente, lo que genera resistencia a las normas institucionales.

  18. Three-dimensional information extraction from GaoFen-1 satellite images for landslide monitoring

    Science.gov (United States)

    Wang, Shixin; Yang, Baolin; Zhou, Yi; Wang, Futao; Zhang, Rui; Zhao, Qing

    2018-05-01

    To more efficiently use GaoFen-1 (GF-1) satellite images for landslide emergency monitoring, a Digital Surface Model (DSM) can be generated from GF-1 across-track stereo image pairs to build a terrain dataset. This study proposes a landslide 3D information extraction method based on the terrain changes of slope objects. The slope objects are mergences of segmented image objects which have similar aspects; and the terrain changes are calculated from the post-disaster Digital Elevation Model (DEM) from GF-1 and the pre-disaster DEM from GDEM V2. A high mountain landslide that occurred in Wenchuan County, Sichuan Province is used to conduct a 3D information extraction test. The extracted total area of the landslide is 22.58 ha; the displaced earth volume is 652,100 m3; and the average sliding direction is 263.83°. The accuracies of them are 0.89, 0.87 and 0.95, respectively. Thus, the proposed method expands the application of GF-1 satellite images to the field of landslide emergency monitoring.

  19. Fenômeno, estrutura, sintoma e clínica: a droga

    Directory of Open Access Journals (Sweden)

    Sonia Alberti

    Full Text Available Partindo de uma leitura que se baseia em quatro autores brasileiros, este trabalho problematiza e verifica posições teóricas acerca do fenômeno toxicomaníaco e levanta a hipótese de que é possível, com o discurso do analista, em certo contexto e a partir de certas condições, apontar a toxicomania como equivalente ao sintoma no discurso da histérica, o que abre vias para a construção de uma clínica em que prevaleça a aposta no desejo do analista. Ao retomar as referências freudianas quanto à equivalência da droga com o discurso religioso e suas funções de entorpecimento, verificase uma possível sustentação metafórica, necessária para qualquer formação de sintoma. Por outro lado, ao retomar as referências de Lacan quanto ao discurso do capitalista como o discurso do mestre contemporâneo, a questão é de sustentar a possibilidade de a droga fazer obstáculo ao livre funcionamento do gozo do mestre nesse discurso.

  20. 13C based proteinogenic amino acid (PAA and metabolic flux ratio analysis of Lactococcus lactis reveals changes in pentose phosphate (PP pathway in response to agitation and temperature related stresses

    Directory of Open Access Journals (Sweden)

    Kamalrul Azlan Azizan

    2017-07-01

    Full Text Available Lactococcus lactis subsp. cremoris MG1363 is an important starter culture for dairy fermentation. During industrial fermentations, L. lactis is constantly exposed to stresses that affect the growth and performance of the bacterium. Although the response of L. lactis to several stresses has been described, the adaptation mechanisms at the level of in vivo fluxes have seldom been described. To gain insights into cellular metabolism, 13C metabolic flux analysis and gas chromatography mass spectrometry (GC-MS were used to measure the flux ratios of active pathways in the central metabolism of L. lactis when subjected to three conditions varying in temperature (30°C, 37°C and agitation (with and without agitation at 150 rpm. Collectively, the concentrations of proteinogenic amino acids (PAAs and free fatty acids (FAAs were compared, and Pearson correlation analysis (r was calculated to measure the pairwise relationship between PAAs. Branched chain and aromatic amino acids, threonine, serine, lysine and histidine were correlated strongly, suggesting changes in flux regulation in glycolysis, the pentose phosphate (PP pathway, malic enzyme and anaplerotic reaction catalysed by pyruvate carboxylase (pycA. Flux ratio analysis revealed that glucose was mainly converted by glycolysis, highlighting the stability of L. lactis’ central carbon metabolism despite different conditions. Higher flux ratios through oxaloacetate (OAA from pyruvate (PYR reaction in all conditions suggested the activation of pyruvate carboxylate (pycA in L. lactis, in response to acid stress during exponential phase. Subsequently, more significant flux ratio differences were seen through the oxidative and non-oxidative pentose phosphate (PP pathways, malic enzyme, and serine and C1 metabolism, suggesting NADPH requirements in response to environmental stimuli. These reactions could play an important role in optimization strategies for metabolic engineering in L. lactis. Overall

  1. 13C based proteinogenic amino acid (PAA) and metabolic flux ratio analysis of Lactococcus lactis reveals changes in pentose phosphate (PP) pathway in response to agitation and temperature related stresses.

    Science.gov (United States)

    Azizan, Kamalrul Azlan; Ressom, Habtom W; Mendoza, Eduardo R; Baharum, Syarul Nataqain

    2017-01-01

    Lactococcus lactis subsp. cremoris MG1363 is an important starter culture for dairy fermentation. During industrial fermentations, L. lactis is constantly exposed to stresses that affect the growth and performance of the bacterium. Although the response of L. lactis to several stresses has been described, the adaptation mechanisms at the level of in vivo fluxes have seldom been described. To gain insights into cellular metabolism, 13 C metabolic flux analysis and gas chromatography mass spectrometry (GC-MS) were used to measure the flux ratios of active pathways in the central metabolism of L. lactis when subjected to three conditions varying in temperature (30°C, 37°C) and agitation (with and without agitation at 150 rpm). Collectively, the concentrations of proteinogenic amino acids (PAAs) and free fatty acids (FAAs) were compared, and Pearson correlation analysis ( r ) was calculated to measure the pairwise relationship between PAAs. Branched chain and aromatic amino acids, threonine, serine, lysine and histidine were correlated strongly, suggesting changes in flux regulation in glycolysis, the pentose phosphate (PP) pathway, malic enzyme and anaplerotic reaction catalysed by pyruvate carboxylase (pycA). Flux ratio analysis revealed that glucose was mainly converted by glycolysis, highlighting the stability of L. lactis' central carbon metabolism despite different conditions. Higher flux ratios through oxaloacetate (OAA) from pyruvate (PYR) reaction in all conditions suggested the activation of pyruvate carboxylate (pycA) in L. lactis , in response to acid stress during exponential phase. Subsequently, more significant flux ratio differences were seen through the oxidative and non-oxidative pentose phosphate (PP) pathways, malic enzyme, and serine and C1 metabolism, suggesting NADPH requirements in response to environmental stimuli. These reactions could play an important role in optimization strategies for metabolic engineering in L. lactis . Overall, the

  2. 13C based proteinogenic amino acid (PAA) and metabolic flux ratio analysis of Lactococcus lactis reveals changes in pentose phosphate (PP) pathway in response to agitation and temperature related stresses

    Science.gov (United States)

    2017-01-01

    Lactococcus lactis subsp. cremoris MG1363 is an important starter culture for dairy fermentation. During industrial fermentations, L. lactis is constantly exposed to stresses that affect the growth and performance of the bacterium. Although the response of L. lactis to several stresses has been described, the adaptation mechanisms at the level of in vivo fluxes have seldom been described. To gain insights into cellular metabolism, 13C metabolic flux analysis and gas chromatography mass spectrometry (GC-MS) were used to measure the flux ratios of active pathways in the central metabolism of L. lactis when subjected to three conditions varying in temperature (30°C, 37°C) and agitation (with and without agitation at 150 rpm). Collectively, the concentrations of proteinogenic amino acids (PAAs) and free fatty acids (FAAs) were compared, and Pearson correlation analysis (r) was calculated to measure the pairwise relationship between PAAs. Branched chain and aromatic amino acids, threonine, serine, lysine and histidine were correlated strongly, suggesting changes in flux regulation in glycolysis, the pentose phosphate (PP) pathway, malic enzyme and anaplerotic reaction catalysed by pyruvate carboxylase (pycA). Flux ratio analysis revealed that glucose was mainly converted by glycolysis, highlighting the stability of L. lactis’ central carbon metabolism despite different conditions. Higher flux ratios through oxaloacetate (OAA) from pyruvate (PYR) reaction in all conditions suggested the activation of pyruvate carboxylate (pycA) in L. lactis, in response to acid stress during exponential phase. Subsequently, more significant flux ratio differences were seen through the oxidative and non-oxidative pentose phosphate (PP) pathways, malic enzyme, and serine and C1 metabolism, suggesting NADPH requirements in response to environmental stimuli. These reactions could play an important role in optimization strategies for metabolic engineering in L. lactis. Overall, the

  3. Water level, vegetation composition, and plant productivity explain greenhouse gas fluxes in temperate cutover fens after inundation

    Science.gov (United States)

    Minke, Merten; Augustin, Jürgen; Burlo, Andrei; Yarmashuk, Tatsiana; Chuvashova, Hanna; Thiele, Annett; Freibauer, Annette; Tikhonov, Vitalij; Hoffmann, Mathias

    2016-07-01

    Peat extraction leaves a land surface with a strong relief of deep cutover areas and higher ridges. Rewetting inundates the deep parts, while less deeply extracted zones remain at or above the water level. In temperate fens the flooded areas are colonized by helophytes such as Eriophorum angustifolium, Carex spp., Typha latifolia or Phragmites australis dependent on water depth. Reeds of Typha and Phragmites are reported as large sources of methane, but data on net CO2 uptake are contradictory for Typha and rare for Phragmites. Here, we analyze the effect of vegetation, water level and nutrient conditions on greenhouse gas (GHG) emissions for representative vegetation types along water level gradients at two rewetted cutover fens (mesotrophic and eutrophic) in Belarus. Greenhouse gas emissions were measured campaign-wise with manual chambers every 2 to 4 weeks for 2 years and interpolated by modelling. All sites had negligible nitrous oxide exchange rates. Most sites were carbon sinks and small GHG sources. Methane emissions generally increased with net ecosystem CO2 uptake. Mesotrophic small sedge reeds with water table around the land surface were small GHG sources in the range of 2.3 to 4.2 t CO2 eq. ha-1 yr-1. Eutrophic tall sedge - Typha latifolia reeds on newly formed floating mats were substantial net GHG emitters in the range of 25.1 to 39.1 t CO2 eq. ha-1 yr. They represent transient vegetation stages. Phragmites reeds ranged between -1.7 to 4.2 t CO2 eq. ha-1 yr-1 with an overall mean GHG emission of 1.3 t CO2 eq. ha-1 yr-1. The annual CO2 balance was best explained by vegetation biomass, which includes the role of vegetation composition and species. Methane emissions were obviously driven by biological activity of vegetation and soil organisms. Shallow flooding of cutover temperate fens is a suitable measure to arrive at low GHG emissions. Phragmites australis establishment should be promoted in deeper flooded areas and will lead to moderate, but

  4. Novel properties of the wheat aluminum tolerance organic acid transporter (TaALMT1) revealed by electrophysiological characterization in Xenopus Oocytes: functional and structural implications.

    Science.gov (United States)

    Piñeros, Miguel A; Cançado, Geraldo M A; Kochian, Leon V

    2008-08-01

    Many plant species avoid the phytotoxic effects of aluminum (Al) by exuding dicarboxylic and tricarboxylic acids that chelate and immobilize Al(3+) at the root surface, thus preventing it from entering root cells. Several novel genes that encode membrane transporters from the ALMT and MATE families recently were cloned and implicated in mediating the organic acid transport underlying this Al tolerance response. Given our limited understanding of the functional properties of ALMTs, in this study a detailed characterization of the transport properties of TaALMT1 (formerly named ALMT1) from wheat (Triticum aestivum) expressed in Xenopus laevis oocytes was conducted. The electrophysiological findings are as follows. Although the activity of TaALMT1 is highly dependent on the presence of extracellular Al(3+) (K(m1/2) of approximately 5 microm Al(3+) activity), TaALMT1 is functionally active and can mediate ion transport in the absence of extracellular Al(3+). The lack of change in the reversal potential (E(rev)) upon exposure to Al(3+) suggests that the "enhancement" of TaALMT1 malate transport by Al is not due to alteration in the transporter's selectivity properties but is solely due to increases in its anion permeability. The consistent shift in the direction of the E(rev) as the intracellular malate activity increases indicates that TaALMT1 is selective for the transport of malate over other anions. The estimated permeability ratio between malate and chloride varied between 1 and 30. However, the complex behavior of the E(rev) as the extracellular Cl(-) activity was varied indicates that this estimate can only be used as a general guide to understanding the relative affinity of TaALMT1 for malate, representing only an approximation of those expected under physiologically relevant ionic conditions. TaALMT1 can also mediate a large anion influx (i.e. outward currents). TaALMT1 is permeable not only to malate but also to other physiologically relevant anions such as Cl

  5. Novel Properties of the Wheat Aluminum Tolerance Organic Acid Transporter (TaALMT1) Revealed by Electrophysiological Characterization in Xenopus Oocytes: Functional and Structural Implications1[OA

    Science.gov (United States)

    Piñeros, Miguel A.; Cançado, Geraldo M.A.; Kochian, Leon V.

    2008-01-01

    Many plant species avoid the phytotoxic effects of aluminum (Al) by exuding dicarboxylic and tricarboxylic acids that chelate and immobilize Al3+ at the root surface, thus preventing it from entering root cells. Several novel genes that encode membrane transporters from the ALMT and MATE families recently were cloned and implicated in mediating the organic acid transport underlying this Al tolerance response. Given our limited understanding of the functional properties of ALMTs, in this study a detailed characterization of the transport properties of TaALMT1 (formerly named ALMT1) from wheat (Triticum aestivum) expressed in Xenopus laevis oocytes was conducted. The electrophysiological findings are as follows. Although the activity of TaALMT1 is highly dependent on the presence of extracellular Al3+ (Km1/2 of approximately 5 μm Al3+ activity), TaALMT1 is functionally active and can mediate ion transport in the absence of extracellular Al3+. The lack of change in the reversal potential (Erev) upon exposure to Al3+ suggests that the “enhancement” of TaALMT1 malate transport by Al is not due to alteration in the transporter's selectivity properties but is solely due to increases in its anion permeability. The consistent shift in the direction of the Erev as the intracellular malate activity increases indicates that TaALMT1 is selective for the transport of malate over other anions. The estimated permeability ratio between malate and chloride varied between 1 and 30. However, the complex behavior of the Erev as the extracellular Cl− activity was varied indicates that this estimate can only be used as a general guide to understanding the relative affinity of TaALMT1 for malate, representing only an approximation of those expected under physiologically relevant ionic conditions. TaALMT1 can also mediate a large anion influx (i.e. outward currents). TaALMT1 is permeable not only to malate but also to other physiologically relevant anions such as Cl−, NO3−, and

  6. Metódica: Articulación sistema teórico, fenómeno y procesos en el objeto de estudio. Una perspectiva desde el fenómeno pobreza

    OpenAIRE

    Yajaira Jiménez Zabala

    2011-01-01

    En este artículo discutimos la visión metódica que toma como apoyo el pivote entre lo cualitativo, lo cuantitativo y el orden de complejidad, en un enfoque plurimetódico, a través del cual se construyó la visión de la pobreza como objeto de estudio. Tal selección, está justificada en tanto se entiende la pobreza como un fenómeno social complejo, por las diversas aristas que le identifican. La combinación de los enfoques metodológicos permitió la aprehensión de los diferentes aspectos del fenó...

  7. Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands.

    Science.gov (United States)

    Chen, Yin; Dumont, Marc G; Neufeld, Josh D; Bodrossy, Levente; Stralis-Pavese, Nancy; McNamara, Niall P; Ostle, Nick; Briones, Maria J I; Murrell, J Colin

    2008-10-01

    Peatlands represent an enormous carbon reservoir and have a potential impact on the global climate because of the active methanogenesis and methanotrophy in these soils. Uncultivated methanotrophs from seven European peatlands were studied using a combination of molecular methods. Screening for methanotroph diversity using a particulate methane monooxygenase-based diagnostic gene array revealed that Methylocystis-related species were dominant in six of the seven peatlands studied. The abundance and methane oxidation activity of Methylocystis spp. were further confirmed by DNA stable-isotope probing analysis of a sample taken from the Moor House peatland (England). After ultracentrifugation, (13)C-labelled DNA, containing genomic DNA of these Methylocystis spp., was separated from (12)C DNA and subjected to multiple displacement amplification (MDA) to generate sufficient DNA for the preparation of a fosmid metagenomic library. Potential bias of MDA was detected by fingerprint analysis of 16S rRNA using denaturing gradient gel electrophoresis for low-template amplification (0.01 ng template). Sufficient template (1-5 ng) was used in MDA to circumvent this bias and chimeric artefacts were minimized by using an enzymatic treatment of MDA-generated DNA with S1 nuclease and DNA polymerase I. Screening of the metagenomic library revealed one fosmid containing methanol dehydrogenase and two fosmids containing 16S rRNA genes from these Methylocystis-related species as well as one fosmid containing a 16S rRNA gene related to that of Methylocella/Methylocapsa. Sequencing of the 14 kb methanol dehydrogenase-containing fosmid allowed the assembly of a gene cluster encoding polypeptides involved in bacterial methanol utilization (mxaFJGIRSAC). This combination of DNA stable-isotope probing, MDA and metagenomics provided access to genomic information of a relatively large DNA fragment of these thus far uncultivated, predominant and active methanotrophs in peatland soil.

  8. Distinct abscisic acid signaling pathways for modulation of guard cell versus mesophyll cell potassium channels revealed by expression studies in Xenopus laevis oocytes

    Science.gov (United States)

    Sutton, F.; Paul, S. S.; Wang, X. Q.; Assmann, S. M.; Evans, M. L. (Principal Investigator)

    2000-01-01

    Regulation of guard cell ion transport by abscisic acid (ABA) and in particular ABA inhibition of a guard cell inward K(+) current (I(Kin)) is well documented. However, little is known concerning ABA effects on ion transport in other plant cell types. Here we applied patch clamp techniques to mesophyll cell protoplasts of fava bean (Vicia faba cv Long Pod) plants and demonstrated ABA inhibition of an outward K(+) current (I(Kout)). When mesophyll cell protoplast mRNA (mesophyll mRNA) was expressed in Xenopus laevis oocytes, I(Kout) was generated that displayed similar properties to I(Kout) observed from direct analysis of mesophyll cell protoplasts. I(Kout) expressed by mesophyll mRNA-injected oocytes was inhibited by ABA, indicating that the ABA signal transduction pathway observed in mesophyll cells was preserved in the frog oocytes. Co-injection of oocytes with guard cell protoplast mRNA and cRNA for KAT1, an inward K(+) channel expressed in guard cells, resulted in I(Kin) that was similarly inhibited by ABA. However, oocytes co-injected with mesophyll mRNA and KAT1 cRNA produced I(Kin) that was not inhibited by ABA. These results demonstrate that the mesophyll-encoded signaling mechanism could not substitute for the guard cell pathway. These findings indicate that mesophyll cells and guard cells use distinct and different receptor types and/or signal transduction pathways in ABA regulation of K(+) channels.

  9. Resting-state fMRI revealed different brain activities responding to valproic acid and levetiracetam in benign epilepsy with central-temporal spikes

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Qirui; Zhang, Zhiqiang; Xu, Qiang; Wu, Han; Li, Zhipeng; Lu, Guangming [Nanjing University School of Medicine, Department of Medical Imaging, Jinling Hospital, Nanjing (China); Yang, Fang; Li, Qian [Nanjing University School of Medicine, Department of Neurology, Jinling Hospital, Nanjing (China); Hu, Zheng [Nanjing Children' s Hospital, Department of Neurology, Nanjing (China); Dante, Mantini [Faculty of Kinesiology and Rehabilitation Sciences, KU Leuven (Belgium); Li, Kai [Suzhou University, Laboratory of Molecular Medicine, Suzhou (China)

    2017-05-15

    Our aim was to investigate regional difference in brain activities in response to antiepileptic drug (AED) medications in benign epilepsy with central-temporal spikes (BECTS) using resting-state functional magnetic resonance imaging (fMRI). Fifty-seven patients with BECTS underwent resting-state fMRI scans after receiving either valproic acid (VPA) (n = 15), levetiracetam (LEV) (n = 21), or no medication (n = 21). fMRI regional homogeneity (ReHo) parameter among the three groups of patients were compared and were correlated with total doses of AED in the two medicated groups. Compared with patients on no-medication, patients receiving either VPA or LEV showed decreased ReHo in the central-temporal region, frontal cortex, and thalamus. In particular, the VPA group showed greater ReHo decrease in the thalamus and milder in cortices and caudate heads compared with the LEV group. In addition, the VPA group demonstrated a negative correlation between ReHo values in the central-temporal region and medication dose. Both VPA and LEV inhibit resting-state neural activity in the central-temporal region, which is the main epileptogenic focus of BECTS. VPA reduced brain activity in the cortical epileptogenic regions and thalamus evenly, whereas LEV reduced brain activity predominantly in the cortices. Interestingly, VPA showed a cumulative effect on inhibiting brain activity in the epileptogenic regions in BECTS. (orig.)

  10. Establishment of thermophilic anaerobic terephthalic acid degradation system through one-step temperature increase startup strategy - Revealed by Illumina Miseq Sequencing.

    Science.gov (United States)

    Ma, Kai-Li; Li, Xiang-Kun; Wang, Ke; Meng, Ling-Wei; Liu, Gai-Ge; Zhang, Jie

    2017-10-01

    Over recent years, thermophilic digestion was constantly focused owing to its various advantage over mesophilic digestion. Notably, the startup approach of thermophilic digester needs to be seriously considered as unsuitable startup ways may result in system inefficiency. In this study, one-step temperature increase startup strategy from 37 °C to 55 °C was applied to establish a thermophilic anaerobic system treating terephthalic acid (TA) contained wastewater, meanwhile, the archaeal and bacterial community compositions at steady periods of 37 °C and 55 °C during the experimental process was also compared using Illumina Miseq Sequencing. The process operation demonstrated that the thermophilic TA degradation system was successfully established at 55 °C with over 95% COD reduction. For archaea community, the elevation of operational temperature from 37 °C to 55 °C accordingly increase the enrichment of hydrogenotrophic methanogens but decrease the abundance of the acetotrophic ones. While for bacterial community, the taxonomic analysis suggested that Syntrophorhabdus (27.40%) was the dominant genus promoting the efficient TA degradation under mesophilic condition, whereas OPB95 (24.99%) and TA06 (14.01%) related populations were largely observed and probably take some crucial role in TA degradation under thermophilic condition. Copyright © 2017 Elsevier Ltd. All rights reserved.

  11. Interactions between indole-3-acetic acid (IAA) with a lectin from Canavalia maritima seeds reveal a new function for lectins in plant physiology.

    Science.gov (United States)

    Delatorre, Plinio; Silva-Filho, José Caetano; Rocha, Bruno Anderson Matias; Santi-Gadelha, Tatiane; da Nóbrega, Raphael Batista; Gadelha, Carlos Alberto Almeida; do Nascimento, Kyria Santiago; Nagano, Celso Shiniti; Sampaio, Alexandre Holanda; Cavada, Benildo Sousa

    2013-09-01

    Indole-3-acetic acid (IAA) bound is considered a storage molecule and is inactive. However, some studies have proposed an additional possible regulatory mechanism based on the ability of lectins to form complexes with IAA. We report the first crystal structure of ConM in complex with IAA at 2.15 Å resolution. Based on a tetrameric model of the complex, we hypothesize how the lectin controls the availability of IAA during the early seedling stages, indicating a possible new physiological role for these proteins. A free indole group is also bound to the protein. The ConM interaction with different forms of IAA is a strategy to render the phytohormone unavailable to the cell. Thus, this new physiological role proposed for legume lectins might be a novel mechanism by which IAA levels are decreased in addition to the destruction and formation of new complexes in the later stages of seed germination. Copyright © 2013 Elsevier Masson SAS. All rights reserved.

  12. Molecular simulations of lactose-bound and unbound forms of the FaeG adhesin reveal critical amino acids involved in sugar binding.

    Science.gov (United States)

    Baker, Joseph L; Jafri, Heba

    2016-11-01

    F4 fimbriae are protein filaments found in enterotoxigenic Escherichia coli cells and are implicated in the process of bacterial infection due to their function as bacterial adhesins. These filaments are comprised from several proteins, but the bacterial adhesin FaeG, which is a lactose-binding protein, is the major subunit comprising F4 fimbriae. Crystal structures for three variants of the FaeG protein were recently solved, including the ad variant of FaeG that was crystallized in complex with lactose. However, the dynamics of the FaeG protein bound to lactose have not been explored previously using molecular dynamics simulations. Therefore, in order to study the dynamical interactions between the FaeG ad variant and lactose, we have carried out the first all-atom molecular dynamics simulations of this system. We have also probed the role of crystallographic water molecules on the stability of lactose in the FaeG binding site, and have simulated seven FaeG mutants to probe the influence of amino acid substitutions on the ability of FaeG to bind lactose effectively. Our simulations agree well with experimental results for the influence of mutations on lactose binding, provide dynamical insights into the interactions of FaeG with lactose, and also suggest the possibility of additional regions of the FaeG protein that may act as secondary lactose binding sites. Copyright © 2016 Elsevier Inc. All rights reserved.

  13. Resting-state fMRI revealed different brain activities responding to valproic acid and levetiracetam in benign epilepsy with central-temporal spikes

    International Nuclear Information System (INIS)

    Zhang, Qirui; Zhang, Zhiqiang; Xu, Qiang; Wu, Han; Li, Zhipeng; Lu, Guangming; Yang, Fang; Li, Qian; Hu, Zheng; Dante, Mantini; Li, Kai

    2017-01-01

    Our aim was to investigate regional difference in brain activities in response to antiepileptic drug (AED) medications in benign epilepsy with central-temporal spikes (BECTS) using resting-state functional magnetic resonance imaging (fMRI). Fifty-seven patients with BECTS underwent resting-state fMRI scans after receiving either valproic acid (VPA) (n = 15), levetiracetam (LEV) (n = 21), or no medication (n = 21). fMRI regional homogeneity (ReHo) parameter among the three groups of patients were compared and were correlated with total doses of AED in the two medicated groups. Compared with patients on no-medication, patients receiving either VPA or LEV showed decreased ReHo in the central-temporal region, frontal cortex, and thalamus. In particular, the VPA group showed greater ReHo decrease in the thalamus and milder in cortices and caudate heads compared with the LEV group. In addition, the VPA group demonstrated a negative correlation between ReHo values in the central-temporal region and medication dose. Both VPA and LEV inhibit resting-state neural activity in the central-temporal region, which is the main epileptogenic focus of BECTS. VPA reduced brain activity in the cortical epileptogenic regions and thalamus evenly, whereas LEV reduced brain activity predominantly in the cortices. Interestingly, VPA showed a cumulative effect on inhibiting brain activity in the epileptogenic regions in BECTS. (orig.)

  14. Distinct intestinal adaptation for vitamin B12 and bile acid absorption revealed in a new mouse model of massive ileocecal resection.

    Science.gov (United States)

    Matsumoto, Yuka; Mochizuki, Wakana; Akiyama, Shintaro; Matsumoto, Taichi; Nozaki, Kengo; Watanabe, Mamoru; Nakamura, Tetsuya

    2017-09-15

    Ileocecal resection (ICR), one of several types of intestinal resection that results in short bowel syndrome (SBS), causes severe clinical disease in humans. We here describe a mouse model of massive ICR in which 75% of the distal small intestine is removed. We demonstrate that mice underwent 75% ICR show severe clinical signs and high mortality, which may recapitulate severe forms of human SBS, despite an adaptive response throughout the remnant intestine. By using this model, we also investigated whether the epithelium of the remnant intestine shows enhanced expression of factors involved in region-specific functions of the ileum. Cubn mRNA and its protein product, which play an essential role in vitamin B12 absorption in the ileum, are not compensatory up-regulated in any part of the remnant intestine, demonstrating a clear contrast with post-operative up-regulation of genes involved in bile acid absorption. Our study suggests that functional adaptation by phenotypical changes in the intestinal epithelium is not a general feature for nutrient absorption systems that are confined to the ileum. We also propose that the mouse model developed in this study will become a unique system to facilitate studies on SBS with ICR in humans. © 2017. Published by The Company of Biologists Ltd.

  15. Distinct intestinal adaptation for vitamin B12 and bile acid absorption revealed in a new mouse model of massive ileocecal resection

    Directory of Open Access Journals (Sweden)

    Yuka Matsumoto

    2017-09-01

    Full Text Available Ileocecal resection (ICR, one of several types of intestinal resection that results in short bowel syndrome (SBS, causes severe clinical disease in humans. We here describe a mouse model of massive ICR in which 75% of the distal small intestine is removed. We demonstrate that mice underwent 75% ICR show severe clinical signs and high mortality, which may recapitulate severe forms of human SBS, despite an adaptive response throughout the remnant intestine. By using this model, we also investigated whether the epithelium of the remnant intestine shows enhanced expression of factors involved in region-specific functions of the ileum. Cubn mRNA and its protein product, which play an essential role in vitamin B12 absorption in the ileum, are not compensatory up-regulated in any part of the remnant intestine, demonstrating a clear contrast with post-operative up-regulation of genes involved in bile acid absorption. Our study suggests that functional adaptation by phenotypical changes in the intestinal epithelium is not a general feature for nutrient absorption systems that are confined to the ileum. We also propose that the mouse model developed in this study will become a unique system to facilitate studies on SBS with ICR in humans.

  16. Metabolomic profiling and stable isotope labelling of Trichomonas vaginalis and Tritrichomonas foetus reveal major differences in amino acid metabolism including the production of 2-hydroxyisocaproic acid, cystathionine and S-methylcysteine.

    Science.gov (United States)

    Westrop, Gareth D; Wang, Lijie; Blackburn, Gavin J; Zhang, Tong; Zheng, Liang; Watson, David G; Coombs, Graham H

    2017-01-01

    Trichomonas vaginalis and Tritrichomonas foetus are pathogens that parasitise, respectively, human and bovine urogenital tracts causing disease. Using LC-MS, reference metabolomic profiles were obtained for both species and stable isotope labelling with D-[U-13C6] glucose was used to analyse central carbon metabolism. This facilitated a comparison of the metabolic pathways of T. vaginalis and T. foetus, extending earlier targeted biochemical studies. 43 metabolites, whose identities were confirmed by comparison of their retention times with authentic standards, occurred at more than 3-fold difference in peak intensity between T. vaginalis and T. foetus. 18 metabolites that were removed from or released into the medium during growth also showed more than 3-fold difference between the species. Major differences were observed in cysteine and methionine metabolism in which homocysteine, produced as a bi-product of trans-methylation, is catabolised by methionine γ-lyase in T. vaginalis but converted to cystathionine in T. foetus. Both species synthesise methylthioadenosine by an unusual mechanism, but it is not used as a substrate for methionine recycling. T. vaginalis also produces and exports high levels of S-methylcysteine, whereas only negligible levels were found in T. foetus which maintains significantly higher intracellular levels of cysteine. 13C-labeling confirmed that both cysteine and S-methylcysteine are synthesised by T. vaginalis; S-methylcysteine can be generated by recombinant T. vaginalis cysteine synthase using phosphoserine and methanethiol. T. foetus contained higher levels of ornithine and citrulline than T. vaginalis and exported increased levels of putrescine, suggesting greater flux through the arginine dihydrolase pathway. T. vaginalis produced and exported hydroxy acid derivatives of certain amino acids, particularly 2-hydroxyisocaproic acid derived from leucine, whereas negligible levels of these metabolites occurred in T. foetus.

  17. Metabolomic profiling and stable isotope labelling of Trichomonas vaginalis and Tritrichomonas foetus reveal major differences in amino acid metabolism including the production of 2-hydroxyisocaproic acid, cystathionine and S-methylcysteine.

    Directory of Open Access Journals (Sweden)

    Gareth D Westrop

    Full Text Available Trichomonas vaginalis and Tritrichomonas foetus are pathogens that parasitise, respectively, human and bovine urogenital tracts causing disease. Using LC-MS, reference metabolomic profiles were obtained for both species and stable isotope labelling with D-[U-13C6] glucose was used to analyse central carbon metabolism. This facilitated a comparison of the metabolic pathways of T. vaginalis and T. foetus, extending earlier targeted biochemical studies. 43 metabolites, whose identities were confirmed by comparison of their retention times with authentic standards, occurred at more than 3-fold difference in peak intensity between T. vaginalis and T. foetus. 18 metabolites that were removed from or released into the medium during growth also showed more than 3-fold difference between the species. Major differences were observed in cysteine and methionine metabolism in which homocysteine, produced as a bi-product of trans-methylation, is catabolised by methionine γ-lyase in T. vaginalis but converted to cystathionine in T. foetus. Both species synthesise methylthioadenosine by an unusual mechanism, but it is not used as a substrate for methionine recycling. T. vaginalis also produces and exports high levels of S-methylcysteine, whereas only negligible levels were found in T. foetus which maintains significantly higher intracellular levels of cysteine. 13C-labeling confirmed that both cysteine and S-methylcysteine are synthesised by T. vaginalis; S-methylcysteine can be generated by recombinant T. vaginalis cysteine synthase using phosphoserine and methanethiol. T. foetus contained higher levels of ornithine and citrulline than T. vaginalis and exported increased levels of putrescine, suggesting greater flux through the arginine dihydrolase pathway. T. vaginalis produced and exported hydroxy acid derivatives of certain amino acids, particularly 2-hydroxyisocaproic acid derived from leucine, whereas negligible levels of these metabolites occurred in T

  18. The distribution and migration of sodium from a reclaimed upland to a constructed fen peatland in a post-mined oil sands landscape.

    Science.gov (United States)

    Kessel, Eric D; Ketcheson, Scott J; Price, Jonathan S

    2018-07-15

    Post-mine landscape reclamation of the Athabasca Oil Sands Region requires the use of tailings sand, an abundant mine-waste material that often contains large amounts of sodium (Na + ). Due to the mobility of Na + in groundwater and its effects on vegetation, water quality is a concern when incorporating mine waste materials, especially when attempting to construct groundwater-fed peatlands. This research is the first published account of Na + redistribution in groundwater from a constructed tailings sand upland to an adjacent constructed fen peat deposit (Nikanotee Fen). A permeable petroleum coke layer underlying the fen, extending partway into the upland, was important in directing flow and Na + beneath the peat, as designed. Initially, Na + concentration was highest in the tailings sand (average of 232mgL -1 ) and lowest in fen peat (96mgL -1 ). Precipitation-driven recharge to the upland controlled the mass flux of Na from upland to fen, which ranged from 2 to 13tons Na + per year. The mass flux was highest in the driest summer, in part from dry-period flowpaths that direct groundwater with higher concentrations of Na + into the coke layer, and in part because of the high evapotranspiration loss from the fen in dry periods, which induces upward water flow. With the estimated flux rates of 336mmyr -1 , the Na + arrival time to the fen surface was estimated to be between 4 and 11years. Over the four-year study, average Na + concentrations within the fen rooting zone increased from 87 to 200mgL -1 , and in the tailings sand decreased to 196mgL -1 . The planting of more salt-tolerant vegetation in the fen is recommended, given the potential for Na + accumulation. This study shows reclamation designs can use layered flow system to control the rate, pattern, and timing of solute interactions with surface soil systems. Crown Copyright © 2018. Published by Elsevier B.V. All rights reserved.

  19. Label-Free LC-MS Profiling of Skeletal Muscle Reveals Heart-Type Fatty Acid Binding Protein as a Candidate Biomarker of Aerobic Capacity

    Directory of Open Access Journals (Sweden)

    Zulezwan A. Malik

    2013-12-01

    Full Text Available Two-dimensional gel electrophoresis provides robust comparative analysis of skeletal muscle, but this technique is laborious and limited by its inability to resolve all proteins. In contrast, orthogonal separation by SDS-PAGE and reverse-phase liquid chromatography (RPLC coupled to mass spectrometry (MS affords deep mining of the muscle proteome, but differential analysis between samples is challenging due to the greater level of fractionation and the complexities of quantifying proteins based on the abundances of their tryptic peptides. Here we report simple, semi-automated and time efficient (i.e., 3 h per sample proteome profiling of skeletal muscle by 1-dimensional RPLC electrospray ionisation tandem MS. Solei were analysed from rats (n = 5, in each group bred as either high- or low-capacity runners (HCR and LCR, respectively that exhibited a 6.4-fold difference (1,625 ± 112 m vs. 252 ± 43 m, p < 0.0001 in running capacity during a standardized treadmill test. Soluble muscle proteins were extracted, digested with trypsin and individual biological replicates (50 ng of tryptic peptides subjected to LC-MS profiling. Proteins were identified by triplicate LC-MS/MS analysis of a pooled sample of each biological replicate. Differential expression profiling was performed on relative abundances (RA of parent ions, which spanned three orders of magnitude. In total, 207 proteins were analysed, which encompassed almost all enzymes of the major metabolic pathways in skeletal muscle. The most abundant protein detected was type I myosin heavy chain (RA = 5,843 ± 897 and the least abundant protein detected was heat shock 70 kDa protein (RA = 2 ± 0.5. Sixteen proteins were significantly (p < 0.05 more abundant in HCR muscle and hierarchal clustering of the profiling data highlighted two protein subgroups, which encompassed proteins associated with either the respiratory chain or fatty acid oxidation. Heart-type fatty acid binding protein (FABPH was 1

  20. De novo assembly and functional annotation of Myrciaria dubia fruit transcriptome reveals multiple metabolic pathways for L-ascorbic acid biosynthesis.

    Science.gov (United States)

    Castro, Juan C; Maddox, J Dylan; Cobos, Marianela; Requena, David; Zimic, Mirko; Bombarely, Aureliano; Imán, Sixto A; Cerdeira, Luis A; Medina, Andersson E

    2015-11-24

    Myrciaria dubia is an Amazonian fruit shrub that produces numerous bioactive phytochemicals, but is best known by its high L-ascorbic acid (AsA) content in fruits. Pronounced variation in AsA content has been observed both within and among individuals, but the genetic factors responsible for this variation are largely unknown. The goals of this research, therefore, were to assemble, characterize, and annotate the fruit transcriptome of M. dubia in order to reconstruct metabolic pathways and determine if multiple pathways contribute to AsA biosynthesis. In total 24,551,882 high-quality sequence reads were de novo assembled into 70,048 unigenes (mean length = 1150 bp, N50 = 1775 bp). Assembled sequences were annotated using BLASTX against public databases such as TAIR, GR-protein, FB, MGI, RGD, ZFIN, SGN, WB, TIGR_CMR, and JCVI-CMR with 75.2 % of unigenes having annotations. Of the three core GO annotation categories, biological processes comprised 53.6 % of the total assigned annotations, whereas cellular components and molecular functions comprised 23.3 and 23.1 %, respectively. Based on the KEGG pathway assignment of the functionally annotated transcripts, five metabolic pathways for AsA biosynthesis were identified: animal-like pathway, myo-inositol pathway, L-gulose pathway, D-mannose/L-galactose pathway, and uronic acid pathway. All transcripts coding enzymes involved in the ascorbate-glutathione cycle were also identified. Finally, we used the assembly to identified 6314 genic microsatellites and 23,481 high quality SNPs. This study describes the first next-generation sequencing effort and transcriptome annotation of a non-model Amazonian plant that is relevant for AsA production and other bioactive phytochemicals. Genes encoding key enzymes were successfully identified and metabolic pathways involved in biosynthesis of AsA, anthocyanins, and other metabolic pathways have been reconstructed. The identification of these genes and pathways is in agreement with

  1. Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism

    International Nuclear Information System (INIS)

    Bakolitsa, Constantina; Kumar, Abhinav; Jin, Kevin K.; McMullan, Daniel; Krishna, S. Sri; Miller, Mitchell D.; Abdubek, Polat; Acosta, Claire; Astakhova, Tamara; Axelrod, Herbert L.; Burra, Prasad; Carlton, Dennis; Chen, Connie; Chiu, Hsiu-Ju; Clayton, Thomas; Das, Debanu; Deller, Marc C.; Duan, Lian; Elias, Ylva; Ellrott, Kyle; Ernst, Dustin; Farr, Carol L.; Feuerhelm, Julie; Grant, Joanna C.; Grzechnik, Anna; Grzechnik, Slawomir K.; Han, Gye Won; Jaroszewski, Lukasz; Johnson, Hope A.; Klock, Heath E.; Knuth, Mark W.; Kozbial, Piotr; Marciano, David; Morse, Andrew T.; Murphy, Kevin D.; Nigoghossian, Edward; Nopakun, Amanda; Okach, Linda; Paulsen, Jessica; Puckett, Christina; Reyes, Ron; Rife, Christopher L.; Sefcovic, Natasha; Tien, Henry J.; Trame, Christine B.; Trout, Christina V.; Bedem, Henry van den; Weekes, Dana; White, Aprilfawn; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Elsliger, Marc-Andre; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.

    2010-01-01

    Structures of the first representatives of PF06684 (DUF1185) reveal a Bacillus chorismate mutase-like fold with a potential role in amino-acid synthesis. The crystal structures of BB2672 and SPO0826 were determined to resolutions of 1.7 and 2.1 Å by single-wavelength anomalous dispersion and multiple-wavelength anomalous dispersion, respectively, using the semi-automated high-throughput pipeline of the Joint Center for Structural Genomics (JCSG) as part of the NIGMS Protein Structure Initiative (PSI). These proteins are the first structural representatives of the PF06684 (DUF1185) Pfam family. Structural analysis revealed that both structures adopt a variant of the Bacillus chorismate mutase fold (BCM). The biological unit of both proteins is a hexamer and analysis of homologs indicates that the oligomer interface residues are highly conserved. The conformation of the critical regions for oligomerization appears to be dependent on pH or salt concentration, suggesting that this protein might be subject to environmental regulation. Structural similarities to BCM and genome-context analysis suggest a function in amino-acid synthesis

  2. The hsp 16 Gene of the Probiotic Lactobacillus acidophilus Is Differently Regulated by Salt, High Temperature and Acidic Stresses, as Revealed by Reverse Transcription Quantitative PCR (qRT-PCR Analysis

    Directory of Open Access Journals (Sweden)

    Daniela Fiocco

    2011-08-01

    Full Text Available Small heat shock proteins (sHsps are ubiquitous conserved chaperone-like proteins involved in cellular proteins protection under stressful conditions. In this study, a reverse transcription quantitative PCR (RT-qPCR procedure was developed and used to quantify the transcript level of a small heat shock gene (shs in the probiotic bacterium Lactobacillus acidophilus NCFM, under stress conditions such as heat (45 °C and 53 °C, bile (0.3% w/v, hyperosmosis (1 M and 2.5 M NaCl, and low pH value (pH 4. The shs gene of L. acidophilus NCFM was induced by salt, high temperature and acidic stress, while repression was observed upon bile stress. Analysis of the 5' noncoding region of the hsp16 gene reveals the presence of an inverted repeat (IR sequence (TTAGCACTC-N9-GAGTGCTAA homologue to the controlling IR of chaperone expression (CIRCE elements found in the upstream regulatory region of Gram-positive heat shock operons, suggesting that the hsp16 gene of L. acidophilus might be transcriptionally controlled by HrcA. In addition, the alignment of several small heat shock proteins identified so far in lactic acid bacteria, reveals that the Hsp16 of L. acidophilus exhibits a strong evolutionary relationship with members of the Lactobacillus acidophilus group.

  3. High genetic diversity among strains of the unindustrialized lactic acid bacterium Carnobacterium maltaromaticum in dairy products as revealed by multilocus sequence typing.

    Science.gov (United States)

    Rahman, Abdur; Cailliez-Grimal, Catherine; Bontemps, Cyril; Payot, Sophie; Chaillou, Stéphane; Revol-Junelles, Anne-Marie; Borges, Frédéric

    2014-07-01

    Dairy products are colonized with three main classes of lactic acid bacteria (LAB): opportunistic bacteria, traditional starters, and industrial starters. Most of the population structure studies were previously performed with LAB species belonging to these three classes and give interesting knowledge about the population structure of LAB at the stage where they are already industrialized. However, these studies give little information about the population structure of LAB prior their use as an industrial starter. Carnobacterium maltaromaticum is a LAB colonizing diverse environments, including dairy products. Since this bacterium was discovered relatively recently, it is not yet commercialized as an industrial starter, which makes C. maltaromaticum an interesting model for the study of unindustrialized LAB population structure in dairy products. A multilocus sequence typing scheme based on an analysis of fragments of the genes dapE, ddlA, glpQ, ilvE, pyc, pyrE, and leuS was applied to a collection of 47 strains, including 28 strains isolated from dairy products. The scheme allowed detecting 36 sequence types with a discriminatory index of 0.98. The whole population was clustered in four deeply branched lineages, in which the dairy strains were spread. Moreover, the dairy strains could exhibit a high diversity within these lineages, leading to an overall dairy population with a diversity level as high as that of the nondairy population. These results are in agreement with the hypothesis according to which the industrialization of LAB leads to a diversity reduction in dairy products. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

  4. Isotopomer profiling of Leishmania mexicana promastigotes reveals important roles for succinate fermentation and aspartate uptake in tricarboxylic acid cycle (TCA) anaplerosis, glutamate synthesis, and growth.

    Science.gov (United States)

    Saunders, Eleanor C; Ng, William W; Chambers, Jennifer M; Ng, Milica; Naderer, Thomas; Krömer, Jens O; Likic, Vladimir A; McConville, Malcolm J

    2011-08-05

    Leishmania parasites proliferate within nutritionally complex niches in their sandfly vector and mammalian hosts. However, the extent to which these parasites utilize different carbon sources remains poorly defined. In this study, we have followed the incorporation of various (13)C-labeled carbon sources into the intracellular and secreted metabolites of Leishmania mexicana promastigotes using gas chromatography-mass spectrometry and (13)C NMR. [U-(13)C]Glucose was rapidly incorporated into intermediates in glycolysis, the pentose phosphate pathway, and the cytoplasmic carbohydrate reserve material, mannogen. Enzymes involved in the upper glycolytic pathway are sequestered within glycosomes, and the ATP and NAD(+) consumed by these reactions were primarily regenerated by the fermentation of phosphoenolpyruvate to succinate (glycosomal succinate fermentation). The initiating enzyme in this pathway, phosphoenolpyruvate carboxykinase, was exclusively localized to the glycosome. Although some of the glycosomal succinate was secreted, most of the C4 dicarboxylic acids generated during succinate fermentation were further catabolized in the TCA cycle. A high rate of TCA cycle anaplerosis was further suggested by measurement of [U-(13)C]aspartate and [U-(13)C]alanine uptake and catabolism. TCA cycle anaplerosis is apparently needed to sustain glutamate production under standard culture conditions. Specifically, inhibition of mitochondrial aconitase with sodium fluoroacetate resulted in the rapid depletion of intracellular glutamate pools and growth arrest. Addition of high concentrations of exogenous glutamate alleviated this growth arrest. These findings suggest that glycosomal and mitochondrial metabolism in Leishmania promastigotes is tightly coupled and that, in contrast to the situation in some other trypanosomatid parasites, the TCA cycle has crucial anabolic functions.

  5. Comparative proteomic analyses reveal that the regulators of G-protein signaling proteins regulate amino acid metabolism of the rice blast fungus Magnaporthe oryzae.

    Science.gov (United States)

    Zhang, Haifeng; Ma, Hongyu; Xie, Xin; Ji, Jun; Dong, Yanhan; Du, Yan; Tang, Wei; Zheng, Xiaobo; Wang, Ping; Zhang, Zhengguang

    2014-11-01

    The rice blast fungus Magnaporthe oryzae encodes eight regulators of G-protein (GTP-binding protein) signaling (RGS) proteins MoRgs1-MoRgs8 that orchestrate the growth, asexual/sexual production, appressorium differentiation, and pathogenicity. To address the mechanisms by which MoRgs proteins function, we conducted a 2DE proteome study and identified 82 differentially expressed proteins by comparing five ∆Morgs mutants with wild-type Guy11 strain. We found that the abundances of eight amino acid (AA) biosynthesis or degradation associated proteins were markedly altered in five ∆Morgs mutants, indicating one of the main collective roles for the MoRgs proteins is to influence AA metabolism. We showed that MoRgs proteins have distinct roles in AA metabolism and nutrient responses from growth assays. In addition, we characterized MoLys20 (Lys is lysine), a homocitrate synthase, whose abundance was significantly decreased in the ∆Morgs mutants. The ∆Molys20 mutant is auxotrophic for lys and exogenous lys could partially rescue its auxotrophic defects. Deletion of MoLYS20 resulted in defects in conidiation and infection, as well as pathogenicity on rice. Overall, our results indicate that one of the critical roles for MoRgs proteins is to regulate AA metabolism, and that MoLys20 may be directly or indirectly regulated by MoRgs and participated in lys biosynthesis, thereby affecting fungal development and pathogenicity. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  6. The chemopreventive properties of chlorogenic acid reveal a potential new role for the microsomal glucose-6-phosphate translocase in brain tumor progression

    Directory of Open Access Journals (Sweden)

    Desgagnés Julie

    2006-03-01

    Full Text Available Abstract Background Chlorogenic acid (CHL, the most potent functional inhibitor of the microsomal glucose-6-phosphate translocase (G6PT, is thought to possess cancer chemopreventive properties. It is not known, however, whether any G6PT functions are involved in tumorigenesis. We investigated the effects of CHL and the potential role of G6PT in regulating the invasive phenotype of brain tumor-derived glioma cells. Results RT-PCR was used to show that, among the adult and pediatric brain tumor-derived cells tested, U-87 glioma cells expressed the highest levels of G6PT mRNA. U-87 cells lacked the microsomal catalytic subunit glucose-6-phosphatase (G6Pase-α but expressed G6Pase-β which, when coupled to G6PT, allows G6P hydrolysis into glucose to occur in non-glyconeogenic tissues such as brain. CHL inhibited U-87 cell migration and matrix metalloproteinase (MMP-2 secretion, two prerequisites for tumor cell invasion. Moreover, CHL also inhibited cell migration induced by sphingosine-1-phosphate (S1P, a potent mitogen for glioblastoma multiform cells, as well as the rapid, S1P-induced extracellular signal-regulated protein kinase phosphorylation potentially mediated through intracellular calcium mobilization, suggesting that G6PT may also perform crucial functions in regulating intracellular signalling. Overexpression of the recombinant G6PT protein induced U-87 glioma cell migration that was, in turn, antagonized by CHL. MMP-2 secretion was also inhibited by the adenosine triphosphate (ATP-depleting agents 2-deoxyglucose and 5-thioglucose, a mechanism that may inhibit ATP-mediated calcium sequestration by G6PT. Conclusion We illustrate a new G6PT function in glioma cells that could regulate the intracellular signalling and invasive phenotype of brain tumor cells, and that can be targeted by the anticancer properties of CHL.

  7. Structural and molecular dynamics studies of a C1-oxidizing lytic polysaccharide monooxygenase from Heterobasidion irregulare reveal amino acids important for substrate recognition

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Bing [Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala Sweden; Kognole, Abhishek A. [Department of Chemical and Materials Engineering, University of Kentucky, Lexington KY USA; Wu, Miao [Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala Sweden; Westereng, Bjørge [Department of Chemistry, Biotechnology, and Food Science, Norwegian University of Life Sciences, Ås Norway; Crowley, Michael F. [Biosciences Center, National Renewable Energy Laboratory, Golden CO USA; Kim, Seonah [Biosciences Center, National Renewable Energy Laboratory, Golden CO USA; Dimarogona, Maria [Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala Sweden; Department of Chemical Engineering, University of Patras, Greece; Payne, Christina M. [Department of Chemical and Materials Engineering, University of Kentucky, Lexington KY USA; Directorate of Engineering, Division of Chemical, Bioengineering, Environmental, and Transport Systems, National Science Foundation, Alexandria VA USA; Sandgren, Mats [Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala Sweden

    2018-04-24

    Lytic polysaccharide monooxygenases (LPMOs) are a group of recently discovered enzymes that play important roles in the decomposition of recalcitrant polysaccharides. Here, we report the biochemical, structural, and computational characterization of an LPMO from the white-rot fungus Heterobasidion irregulare (HiLPMO9B). This enzyme oxidizes cellulose at the C1 carbon of glycosidic linkages. The crystal structure of HiLPMO9B was determined at 2.1 A resolution using X-ray crystallography. Unlike the majority of the currently available C1-specific LPMO structures, the HiLPMO9B structure contains an extended L2 loop, connecting ..beta..-strands ..beta..2 and ..beta..3 of the ..beta..-sandwich structure. Molecular dynamics (MD) simulations suggest roles for both aromatic and acidic residues in the substrate binding of HiLPMO9B, with the main contribution from the residues located on the extended region of the L2 loop (Tyr20) and the LC loop (Asp205, Tyr207, and Glu210). Asp205 and Glu210 were found to be involved in the hydrogen bonding with the hydroxyl group of the C6 carbon of glucose moieties directly or via a water molecule. Two different binding orientations were observed over the course of the MD simulations. In each orientation, the active-site copper of this LPMO preferentially skewed toward the pyranose C1 of the glycosidic linkage over the targeted glycosidic bond. This study provides additional insight into cellulose binding by C1-specific LPMOs, giving a molecular-level picture of active site substrate interactions.

  8. Fenóis totais, atividade antioxidante e constituintes químicos de extratos de Anacardium occidentale L., Anacardiaceae

    Directory of Open Access Journals (Sweden)

    Mariana H. Chaves

    Full Text Available O presente artigo relata o isolamento e identificação do palmitato, oleato e linoleato de sitosterila, sitosterol, estigmasterol, 3-O-β-D-galactopiranosídeo do sitosterol, 3-O-β-Dgalactopiranosídeo do estigmasterol, 3-O-β-D-glicopiranosídeo do sitosterol e uma mistura de ácidos anacárdicos (monoeno e dieno do extrato etanólico de cascas do caule de Anacardium occidentale L., Anacardiaceae, bem como do sitosterol, estigmasterol, lupeol, β-amirina, catequina e epicatequina do extrato etanólico do tegumento da castanha de caju in natura. Os extratos EtOH da casca e do tegumento foram avaliados quanto ao conteúdo de fenóis totais e atividade antioxidante. O extrato etanólico das cascas do caule apresentou maior conteúdo de compostos fenólicos e percentual de atividade antioxidante.

  9. Biodegradación de compuestos fenólicos del alpechín con Aspergillus terreus

    Directory of Open Access Journals (Sweden)

    García Paeja, María P.

    1992-04-01

    Full Text Available Olive mill wastewater degradation by Aspergillus terreus and under aerobic conditions at 28°C, was measured by the parameter of phenol content. We have explored the effect of different concentrations of olive mill wastewater upon the activity of Aspergillus terreus. Through HPLC, 10 phenol compounds (90% of the total phenolic content of the olive mill wastewater were identified.Se estudia la degradación de alpechines con Aspergillus terreus en condiciones de aerobiosis y temperatura de 28°C, utilizando como parámetro el contenido fenólico. Se analiza el efecto de la concentración de alpechín con Aspergillus terreus utilizando el mismo parámetro. Se han identificado por cromatografía líquida de alta eficacia (CLAE 10 compuestos fenólicos que suponen el 90% del total del alpechín.

  10. The application of pH-sensitive fluorescent dyes in lactic acid bacteria reveals distinct extrusion systems for unmodified and conjugated dyes.

    Science.gov (United States)

    Glaasker, E; Konings, W N; Poolman, B

    1996-01-01

    Intracellular pH in bacteria can be measured efficiently between internal pH values of 6.5 and 8.5 with the fluorescent pH indicator 2',7'-bis-(2-carboxyethyl)-5[and-6]-carboxyfluorescein (BCECF). A new fluorescent pH probe with a lower pKa(app) than BCECF was synthesized from fluorescein isothiocyanate and glutamate. The new probe, N-(fluorescein thio-ureanyl)-glutamate (FTUG), was much less sensitive to changes in concentrations of KCl than was BCECF. Similar to BCECF, an efflux of FTUG independent of the proton motive force, but dependent on ATP, was observed both in Lactobacillus plantarum and Lactococcus lactis. Corrections for probe efflux allowed accurate measurements of the pHin. Similar intracellular pH values were determined with FTUG and BCECF, in the range where both probes can be applied, and the pH values correlated well with those estimated from the distribution of radio-labelled benzoic acid. Since FITC can easily be coupled to substrates containing an amino group, it is possible to develop other FITC derivatives as well. The mechanisms of probe excretion and the nature of the excreted product(s) were studied in further detail for BCECF and FTUG. BCECF was excreted from wild-type L. lactis in an unmodified form as was determined by chromatographic and mass spectrometry analysis. In the case of FTUG, the excreted product was a conjugated derivative. Unmodified FTUG was not excreted, although it was present in cellular extracts from L. lactis. Exit of BCECF was completely inhibited in a BCECF efflux mutant (Bef-) of L. lactis, whereas FTUG-conjugate efflux in this mutant was similar to the wild-type. Addition of indomethacin, a known inhibitor of BCECF efflux in human epithelial cells, resulted in complete inhibition of BCECF efflux in wild-type L. lactis, whereas FTUG-conjugate exit was only slightly affected. The results of the mutant and inhibitor studies suggest that FTUG-conjugate and BCECF efflux in L. lactis are mediated by different ATP

  11. Fenólicos totais e atividade antioxidante do extrato aquoso de broto de feijão-mungo (Vigna radiata L. Total phenolics and antioxidant activity of the aqueous extract of mung bean sprout (Vigna radiata L.

    Directory of Open Access Journals (Sweden)

    Vera Lúcia Arroxelas Galvão de Lima

    2004-03-01

    Full Text Available OBJETIVO: Considerando a importância dos compostos fenólicos em alimentos e que o broto de feijão-mungo vem sendo incluído na culinária brasileira, este estudo teve como objetivo quantificar o teor de fenólicos totais deste vegetal e avaliar a ação antioxidante do seu extrato aquoso. MÉTODOS: Os compostos fenólicos foram extraídos por quatro sistemas de solventes e dois métodos de extração, os quais foram diferenciados no tempo (2 e 1h e número de extrações (2 e 3 extrações. Os fenólicos totais dos extratos foram quantificados por método espectrofotométrico. RESULTADOS: Os extratos obtidos com água à temperatura ambiente (28ºC, nos dois métodos de extração, foram os que apresentaram maior quantidade de fenólicos totais, sem contudo apresentar diferença significativa entre eles. O método II, que consistiu de três extrações em 1h, pode ser considerado o melhor por ter utilizado menor tempo de extração. O extrato aquoso em sistema modelo b-caroteno/ácido linoléico exibiu ação antioxidante (48,07% de inibição da oxidação, entretanto foi inferior ao padrão BHT. CONCLUSÃO: O broto de feijão-mungo possui considerável quantidade de fenólicos totais, compostos responsáveis por sua ação antioxidante, cujo consumo pode proporcionar efeitos benéficos à saúde.OBJECTIVE: Considering the importance of phenolic compounds in foods and the increasing consumption of mung bean sprouts in Brazil, this study had the objective of quantifying the total phenolic content in this vegetable and to assess the antioxidant activity of its aqueous extract. METHODS: The phenolic compounds were extracted by four solvent systems and two extraction methods, which were different in time (2 and 1h and in number of extractions (2 and 3 extractions. The total phenolic content of the extracts were quantified by the spectrophotometric method. RESULTS: The extracts obtained with water at room temperature (28ºC in both extraction

  12. A cryptic targeting signal creates a mitochondrial FEN1 isoform with tailed R-Loop binding properties.

    Directory of Open Access Journals (Sweden)

    Lawrence Kazak

    Full Text Available A growing number of DNA transacting proteins is found in the nucleus and in mitochondria, including the DNA repair and replication protein Flap endonuclease 1, FEN1. Here we show a truncated FEN1 isoform is generated by alternative translation initiation, exposing a mitochondrial targeting signal. The shortened form of FEN1, which we term FENMIT, localizes to mitochondria, based on import into isolated organelles, immunocytochemistry and subcellular fractionation. In vitro FENMIT binds to flap structures containing a 5' RNA flap, and prefers such substrates to single-stranded RNA. FENMIT can also bind to R-loops, and to a lesser extent to D-loops. Exposing human cells to ethidium bromide results in the generation of RNA/DNA hybrids near the origin of mitochondrial DNA replication. FENMIT is recruited to the DNA under these conditions, and is released by RNase treatment. Moreover, high levels of recombinant FENMIT expression inhibit mtDNA replication, following ethidium bromide treatment. These findings suggest FENMIT interacts with RNA/DNA hybrids in mitochondrial DNA, such as those found at the origin of replication.

  13. Interacting effects of sulphate pollution, sulphide toxicity and eutrophication on vegetation development in fens: A mesocosm experiment

    International Nuclear Information System (INIS)

    Geurts, Jeroen J.M.; Sarneel, Judith M.; Willers, Bart J.C.; Roelofs, Jan G.M.; Verhoeven, Jos T.A.; Lamers, Leon P.M.

    2009-01-01

    Both eutrophication and SO 4 pollution can lead to higher availability of nutrients and potentially toxic compounds in wetlands. To unravel the interaction between the level of eutrophication and toxicity at species and community level, effects of SO 4 were tested in nutrient-poor and nutrient-rich fen mesocosms. Biomass production of aquatic and semi-aquatic macrophytes and colonization of the water layer increased after fertilization, leading to dominance of highly competitive species. SO 4 addition increased alkalinity and sulphide concentrations, leading to decomposition and additional eutrophication. SO 4 pollution and concomitant sulphide production considerably reduced biomass production and colonization, but macrophytes were less vulnerable in fertilized conditions. The experiment shows that competition between species, vegetation succession and terrestrialization are not only influenced by nutrient availability, but also by toxicity, which strongly interacts with the level of eutrophication. This implies that previously neutralized toxicity effects in eutrophied fens may appear after nutrient reduction measures have been taken. - Interspecific competition, vegetation succession and terrestrialization in fens depend on the interacting effects of SO 4 pollution, sulphide toxicity and nutrient availability.

  14. Interacting effects of sulphate pollution, sulphide toxicity and eutrophication on vegetation development in fens: A mesocosm experiment

    Energy Technology Data Exchange (ETDEWEB)

    Geurts, Jeroen J.M., E-mail: j.geurts@b-ware.e [Aquatic Ecology and Environmental Biology, Institute for Wetland and Water Research, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen (Netherlands); B-WARE Research Centre, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen (Netherlands); Sarneel, Judith M. [Landscape Ecology, Institute of Environmental Biology, Utrecht University, Sorbonnelaan 16, 3584 CA Utrecht (Netherlands); Willers, Bart J.C.; Roelofs, Jan G.M. [Aquatic Ecology and Environmental Biology, Institute for Wetland and Water Research, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen (Netherlands); Verhoeven, Jos T.A. [Landscape Ecology, Institute of Environmental Biology, Utrecht University, Sorbonnelaan 16, 3584 CA Utrecht (Netherlands); Lamers, Leon P.M. [Aquatic Ecology and Environmental Biology, Institute for Wetland and Water Research, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen (Netherlands)

    2009-07-15

    Both eutrophication and SO{sub 4} pollution can lead to higher availability of nutrients and potentially toxic compounds in wetlands. To unravel the interaction between the level of eutrophication and toxicity at species and community level, effects of SO{sub 4} were tested in nutrient-poor and nutrient-rich fen mesocosms. Biomass production of aquatic and semi-aquatic macrophytes and colonization of the water layer increased after fertilization, leading to dominance of highly competitive species. SO{sub 4} addition increased alkalinity and sulphide concentrations, leading to decomposition and additional eutrophication. SO{sub 4} pollution and concomitant sulphide production considerably reduced biomass production and colonization, but macrophytes were less vulnerable in fertilized conditions. The experiment shows that competition between species, vegetation succession and terrestrialization are not only influenced by nutrient availability, but also by toxicity, which strongly interacts with the level of eutrophication. This implies that previously neutralized toxicity effects in eutrophied fens may appear after nutrient reduction measures have been taken. - Interspecific competition, vegetation succession and terrestrialization in fens depend on the interacting effects of SO{sub 4} pollution, sulphide toxicity and nutrient availability.

  15. Evaluating governance for sustainable development - Insights from experiences in the Dutch fen landscape.

    Science.gov (United States)

    den Uyl, Roos M; Driessen, Peter P J

    2015-11-01

    Prominent strands of discussion in the literature on governance for sustainable development debate how change can be induced to enhance sustainability, and how to evaluate the interventions aimed at prompting such change. Strikingly, there are few contributions about how prominent ideas of inducing change deal with multiple governance criteria for pursuing sustainable development. Moreover, the way ideas about inducing change relate to criteria of governance for sustainable development is not yet studied in an empirical context. This paper therefore comparatively analyses how three prominent modes of sustainable development governance - adaptive management, transition management and payments for environmental services - relate to a set of five prominent criteria reported in the literature, namely: equity, democracy, legitimacy, the handling of scale issues and the handling of uncertainty issues. It finds that the academic debates on these three modes address these criteria with varying attention and rather fragmented, while in the empirical setting of the Dutch fen landscape several aspects relating to the studied criteria were present and substantially influenced the functioning of the three modes of sustainable development. Together, the analysis of the literature debate and the empirical data are able to show that a narrow evaluation perspective may fail to diagnose and capture relevant struggles and complexities coming along with governance for sustainable development relevant issues. The study shows that in order to advance our understanding of governance for sustainable development, it is indeed important to include multiple criteria in studying these modes. Moreover, the study shows the importance of including empirical experiences which manifest when different modes for sustainable development are applied in real-world settings. Copyright © 2015 Elsevier Ltd. All rights reserved.

  16. Large CO2 and CH4 release from a flooded formerly drained fen

    Science.gov (United States)

    Sachs, T.; Franz, D.; Koebsch, F.; Larmanou, E.; Augustin, J.

    2016-12-01

    Drained peatlands are usually strong carbon dioxide (CO2) sources. In Germany, up to 4.5 % of the national CO2 emissions are estimated to be released from agriculturally used peatlands and for some peatland-rich northern states, such as Mecklenburg-Western Pomerania, this share increases to about 20%. Reducing this CO2 source and restoring the peatlands' natural carbon sink is one objective of large-scale nature protection and restoration measures, in which 37.000 ha of drained and degraded peatlands in Mecklenburg-Western Pomerania are slated for rewetting. It is well known, however, that in the initial phase of rewetting, a reduction of the CO2 source strength is usually accompanied by an increase in CH4 emissions. Thus, whether and when the intended effects of rewetting with regard to greenhouse gases are achieved, depends on the balance of CO2 and CH4 fluxes and on the duration of the initial CH4 emission phase. In 2013, a new Fluxnet site went online at a flooded formerly drained river valley fen site near Zarnekow, NE Germany (DE-Zrk), to investigate the combined CO2 and CH4 dynamics at such a heavily degraded and rewetted peatland. The site is dominated by open water with submerged and floating vegetation and surrounding Typha latifolia.Nine year after rewetting, we found large CH4 emissions of 53 g CH4 m-2 a-1 from the open water area, which are 4-fold higher than from the surrounding vegetation zone (13 g CH4 m-2 a-1). Surprisingly, both the open water and the vegetated area were net CO2 sources of 158 and 750 g CO2 m-2 a-1, respectively. Unusual meteorological conditions with a warm and dry summer and a mild winter might have facilitated high respiration rates, particularly from temporally non-inundated organic mud in the vegetation zone.

  17. Re-establishment of hummock topography promotes tree regeneration on highly disturbed moderate-rich fens.

    Science.gov (United States)

    Lieffers, Victor J; Caners, Richard T; Ge, Hangfei

    2017-07-15

    Winter exploration of oil sands deposits underlying wooded fens mostly eliminates the hummock-hollow topography on drilling pads and the ice roads leading to them, after their abandonment in spring. Recovery of black spruce (Picea mariana (P. Mill.) B.S.P.) and tamarack (Larix laricina (Du Roi) K. Koch) on these disturbed peatlands is thought to depend on the recovery of hummock topography. In late winter, numerous large blocks of frozen peat (1.5 × 1.5 m) were lifted out of the flattened drilling pads and positioned beside their excavated hollows; this was done on six temporary pads. Four years later, the condition of the mounds and the regeneration of conifers from natural seed dispersal were assessed on these elevated mounds compared to adjacent flattened areas of the pads. Then, conifer seedling density was more than five times higher on elevated spots than the mostly flat, flood-prone areas between them, and seedling density was positively related to mound height and strength of seed source. Higher mounds tended to have larger seedlings. Mounds on some of the pads were heavily eroded down; these pads had peat with higher humification, and operationally these pads were also treated in late winter when peat was thawing and fractured into pieces during mound construction. Developing a large volume of elevated substrate that persists until natural hummock-forming mosses can establish is thought necessary for tree recruitment and the recovery of the habitat for the threatened woodland caribou of this region. Copyright © 2017 Elsevier Ltd. All rights reserved.

  18. Mathematics revealed

    CERN Document Server

    Berman, Elizabeth

    1979-01-01

    Mathematics Revealed focuses on the principles, processes, operations, and exercises in mathematics.The book first offers information on whole numbers, fractions, and decimals and percents. Discussions focus on measuring length, percent, decimals, numbers as products, addition and subtraction of fractions, mixed numbers and ratios, division of fractions, addition, subtraction, multiplication, and division. The text then examines positive and negative numbers and powers and computation. Topics include division and averages, multiplication, ratios, and measurements, scientific notation and estim

  19. Filtering fens: mechanisms explaining phosphorus-limited hotspots of biodiversity in wetlands adjacent to heavily fertilized areas.

    Science.gov (United States)

    Cusell, Casper; Kooijman, Annemieke; Fernandez, Filippo; van Wirdum, Geert; Geurts, Jeroen J M; van Loon, E Emiel; Kalbitz, Karsten; Lamers, Leon P M

    2014-05-15

    The conservation of biodiverse wetland vegetation, including that of rich fens, has a high priority at a global scale. Although P-eutrophication may strongly decrease biodiversity in rich fens, some well-developed habitats do still survive in highly fertilized regions due to nutrient filtering services of large wetlands. The occurrence of such nutrient gradients is well-known, but the biogeochemical mechanisms that determine these patterns are often unclear. We therefore analyzed chemical speciation and binding of relevant nutrients and minerals in surface waters, soils and plants along such gradients in the large Ramsar nature reserve Weerribben-Wieden in the Netherlands. P-availability was lowest in relatively isolated floating rich fens, where plant N:P ratios indicated P-limitation. P-limitation can persist here despite high P-concentrations in surface waters near the peripheral entry locations, because only a small part of the P-input reaches the more isolated waters and fens. This pattern in P-availability appears to be primarily due to precipitation of Fe-phosphates, which mainly occurs close to entry locations as indicated by decreasing concentrations of Fe- and Al-bound P in the sub-aquatic sediments along this gradient. A further decrease of P-availability is caused by biological sequestration, which occurs throughout the wetland as indicated by equal concentrations of organic P in all sub-aquatic sediments. Our results clearly show that the periphery of large wetlands does indeed act as an efficient P-filter, sustaining the necessary P-limitation in more isolated parts. However, this filtering function does harm the ecological quality of the peripheral parts of the reserve. The filtering mechanisms, such as precipitation of Fe-phosphates and biological uptake of P, are crucial for the conservation and restoration of biodiverse rich fens in wetlands that receive eutrophic water from their surroundings. This seems to implicate that biodiverse wetland

  20. Geochemical response of a calcareous fen to road salt contamination during snow melt and precipitation events: Kampoosa Bog, Stockbridge, MA

    Science.gov (United States)

    Rhodes, A. L.; Guswa, A. J.

    2008-12-01

    Kampoosa Bog is the largest and most diverse calcareous lake-basin fen remaining in Massachusetts, and it is one of the state's elite Areas of Critical Environmental Concern (ACEC). The ground water chemistry of the fen has been greatly altered by road salt runoff (NaCl) from the Massachusetts Turnpike, which crosses the northern margin of the wetland complex. Ground water samples collected at different depths within the wetland, measurements of exchangeable Na from an eight-meter core, and hydraulic conductivity measurements suggest that ground water flow and contamination is largely a near- surface phenomenon. Detailed sampling of surface and ground waters during three spring snow melt events and one precipitation event characterizes the geochemical response of the wetland to hydrologic events. Overall, Na:Cl ratios for surface and ground water samples are less than one, and sodium and chloride imbalances suggest that 20-30% of sodium from rock salt is stored on cation exchange sites on organic material. Na:Cl ratios greater than one for fen ground water sampled during Snow Melt 2007 suggest that sodium can be released from cation exchange sites back to ground water under dilute conditions. The total mass of Na and Cl exported from the wetland is greatest under conditions of high discharge. The flux of dissolved salts at the outlet of the fen during Snow Melt 2005 accounts for ~ 24% Na and ~ 32% Cl of rock salt added to the Massachusetts Turnpike during 2004-2005. Estimates of annual fluxes of Na and Cl are on par with the amount of road salt applied, and sodium and chloride concentrations in shallow groundwater have decreased since 2002. The months of March, April and May are the primary months for salt export, accounting for more than half of the annual salt flux in 2005. Concerning the annual net export of sodium and chloride, large rain events may be more important with removing dissolved salts from the fen than snow melt because snow melt also is a time when

  1. O fenômeno recrutamento e seleção de enfermeiros em hospitais: um enfoque fenomenológico The phenomenon of recruitment and selecting nurses in the hospital: a phenomenon approach

    Directory of Open Access Journals (Sweden)

    Heloisa Helena Ciqueto Peres

    1997-04-01

    Full Text Available Este estudo teve como objetivo, desvelar o processo de recrutamento e seleção de enfermeiros a partir da experiência dos sujeitos que vi venciam essa prática. Para tanto buscou-se como trajetória metodológica a fenomenologia, na modal idade do fenômeno situado no referencial de Joel . Martins. Assim, o estudo foi realizado a partir do discurso de oito enfermeiros que experienciam o fenômeno. A análise dos depoimentos contemplou os momentos de descrição, redução e compreensão fenomenológicas, até o desvelamento da essencialidade do fenômeno investigado. Da análise fenomenológica dos discursos foi possível resgatar aspectos que representam a compreensão geral do processo de recrutamento e seleção de enfermeiros. Dessa forma, a essencialidade do fenômeno desvelado caracterizou-se pelas relações Homem, Organizações e Sociedade, relações essas de interdependência permeadas por múltiplos determinantes transituacionais. Nessa perspectiva, novos horizontes abriram-se no que tange o pensar recrutamento e seleção em enfermagem.This study had the purpose of showing the recruitment and selective process of nurses from their own experiences going through this process. The phenomenology was used as the methodological course, the phenomenon was based on the references by Joel Martins. The study was done from the speeches of eight nurses who went through the recruitment and selective process. The analysis of the speeches followed the moments of the phenomenological description, reduction and understanding until revealing the essence of the recruitment and selective process of nurses. From the phenomenological analysis of the speeches it was possible to get the aspects that represent the general understanding of the recruitment and selective process of nurses. In this way, the essence of the phenomenon was characterized by the relation among the man, the Company and the society, these relations were influenced by several

  2. Using multi-proxy palaeoecology to test a relict status of refugial populations of calcareous-fen species in the Western Carpathians

    Czech Academy of Sciences Publication Activity Database

    Hájková, Petra; Horsák, M.; Hájek, Michal; Jankovská, Vlasta; Jamrichová, Eva; Moutelíková, J.

    2015-01-01

    Roč. 25, č. 4 (2015), s. 702-715 ISSN 0959-6836 Institutional support: RVO:67985939 Keywords : biodiversity * calcareous fen * fossil record * Holocene extinction * Western Carpathians Subject RIV: EF - Botanics Impact factor: 2.135, year: 2015

  3. Mass Spectrometry Analysis of Wild-Type and Knock-in Q140/Q140 Huntington's Disease Mouse Brains Reveals Changes in Glycerophospholipids Including Alterations in Phosphatidic Acid and Lyso-Phosphatidic Acid.

    Science.gov (United States)

    Vodicka, Petr; Mo, Shunyan; Tousley, Adelaide; Green, Karin M; Sapp, Ellen; Iuliano, Maria; Sadri-Vakili, Ghazaleh; Shaffer, Scott A; Aronin, Neil; DiFiglia, Marian; Kegel-Gleason, Kimberly B

    2015-01-01

    Huntington's disease (HD) is a neurodegenerative disease caused by a CAG expansion in the HD gene, which encodes the protein Huntingtin. Huntingtin associates with membranes and can interact directly with glycerophospholipids in membranes. We analyzed glycerophospholipid profiles from brains of 11 month old wild-type (WT) and Q140/Q140 HD knock-in mice to assess potential changes in glycerophospholipid metabolism. Polar lipids from cerebellum, cortex, and striatum were extracted and analyzed by liquid chromatography and negative ion electrospray tandem mass spectrometry analysis (LC-MS/MS). Gene products involved in polar lipid metabolism were studied using western blotting, immuno-electron microscopy and qPCR. Significant changes in numerous species of glycerophosphate (phosphatidic acid, PA) were found in striatum, cerebellum and cortex from Q140/Q140 HD mice compared to WT mice at 11 months. Changes in specific species could also be detected for other glycerophospholipids. Increases in species of lyso-PA (LPA) were measured in striatum of Q140/Q140 HD mice compared to WT. Protein levels for c-terminal binding protein 1 (CtBP1), a regulator of PA biosynthesis, were reduced in striatal synaptosomes from HD mice compared to wild-type at 6 and 12 months. Immunoreactivity for CtBP1 was detected on membranes of synaptic vesicles in striatal axon terminals in the globus pallidus. These novel results identify a potential site of molecular pathology caused by mutant Huntingtin that may impart early changes in HD.

  4. The DNA Repair Repertoire of Mycobacterium smegmatis FenA Includes the Incision of DNA 5' Flaps and the Removal of 5' Adenylylated Products of Aborted Nick Ligation.

    Science.gov (United States)

    Uson, Maria Loressa; Ghosh, Shreya; Shuman, Stewart

    2017-09-01

    We characterize Mycobacterium smegmatis FenA as a manganese-dependent 5'-flap endonuclease homologous to the 5'-exonuclease of DNA polymerase I. FenA incises a nicked 5' flap between the first and second nucleotides of the duplex segment to yield a 1-nucleotide gapped DNA, which is then further resected in dinucleotide steps. Initial FenA cleavage at a Y-flap or nick occurs between the first and second nucleotides of the duplex. However, when the template 3' single strand is eliminated to create a 5'-tailed duplex, FenA incision shifts to between the second and third nucleotides. A double-flap substrate with a mobile junction (mimicking limited strand displacement synthesis during gap repair) is preferentially incised as the 1-nucleotide 3'-flap isomer, with the scissile phosphodiester shifted by one nucleotide versus a static double flap. FenA efficiently removes the 5' App(dN) terminus of an aborted nick ligation reaction intermediate, thereby highlighting FenA as an agent of repair of such lesions, which are formed under a variety of circumstances by bacterial NAD + -dependent DNA ligases and especially by mycobacterial DNA ligases D and C. IMPORTANCE Structure-specific DNA endonucleases are implicated in bacterial DNA replication, repair, and recombination, yet there is scant knowledge of the roster and catalytic repertoire of such nucleases in Mycobacteria This study identifies M. smegmatis FenA as a stand-alone endonuclease homologous to the 5'-exonuclease domain of mycobacterial DNA polymerase 1. FenA incises 5' flaps, 5' nicks, and 5' App(dN) intermediates of aborted nick ligation. The isolated N-terminal domain of M. smegmatis Pol1 is also shown to be a flap endonuclease. Copyright © 2017 American Society for Microbiology.

  5. Seasonal variation in the phenol content of Eugenia uniflora L. leaves Variação sazonal nos teores de fenóis de folhas de Eugenia uniflora L

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    R.M Santos

    2011-01-01

    Full Text Available Hydrolysable tannins, total phenols and flavonoids in Eugenia uniflora leaves were monthly analysed for one year. The results were correlated with climate conditions (rainfall, humidity, cloudiness and mean temperature through chemometric methods. Principal component analysis revealed high levels of hydrolysable tannins in the rainy season, whereas flavonoids were mainly produced in the dry season. These facts suggest that climatic changes may be one of the factors affecting phenol levels in Eugenia uniflora.Taninos hidrolisáveis, fenóis totais e flavonóides presentes em folhas de Eugenia uniflora foram quantificados mensalmente durante um ano. Os resultados foram correlacionados com as condições climáticas (pluviosidade, umidade, nebulosidade e temperatura média através de métodos quimiométricos. Análise de componentes principais revelou a ocorrência de altos teores de taninos hidrolisáveis durante a estação de chuvas, enquanto os flavonóides foram produzidos principalmente na estação seca. Estes fatos sugerem que mudanças climáticas podem ser um dos fatores que afetam os níveis de fenóis em Eugenia uniflora.

  6. The effect of an exceptionally wet summer on methane effluxes from a 15-year re-wetted fen in north-east Germany

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    V. Huth

    2013-10-01

    Full Text Available Re-wetting minerotrophic fens has become an important strategy to mitigate climate change in Germany. However, recent studies report raised methane (CH4 effluxes during the first years after flooding. A minerotrophic fen in north-east Germany that was re-wetted 15 years ago was exposed to exceptionally heavy rainfall and freshwater flooding in August 2011. We measured CH4 effluxes from wetland vegetation stands dominated by Phragmites australis (Cav. Trin. ex Steud., Typha latifolia L. and Carex acutiformis Ehrh., using the closed-chamber method, fortnightly from March 2011 to March 2012 with extra sampling during the flooding. The respective annual effluxes of CH4 (mean ± 1 standard error from the three vegetation types were 18.5 ± 1.3, 21.1 ± 1.2 and 47.5 ± 5.0 g m-2 a-1, with the August effluxes contributing 40 %, 50 % and 10 % of the annual effluxes. Despite the freshwater flooding in August, annual CH4 effluxes from the 15-year re-wetted fen are similar to those reported from pristine fens. These results are promising because they indicate that, although CH4 effluxes are elevated after re-wetting, they may return to values typical for pristine fens after 15 years. Hence, re-wetting can achieve the purpose of reducing greenhouse gas effluxes from drained minerotrophic fens.

  7. Análisis comparativo de compuestos fenólicos totales y actividad antioxidante de cuatro marcas de tisanas de Hibiscus sabdariffa (Malvaceae comercializadas en Costa Rica

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    Melissa Agüero

    2014-01-01

    Full Text Available Las tisanas de rosa de Jamaica (Hibiscus sabdariffa son consumidas en Costa Rica por su conocido efecto cardioprotector asociado a la presencia de compuestos fenólicos, principalmente antocianinas. Este trabajo estableció diferencias en el perfil de compuestos fenólicos y su actividad anti-radical entre diferentes comercializadores de tisanas de Hibiscus sabdariffa en Costa Rica. Se identificaron cualitativamente taninos, flavonoides y antocianinas. Se cuantificó la cantidad total de compuestos fenólicos por el método de Folin-Ciocalteu y se cuantificó la actividad antioxidante con el método de DPPH. Todas las marcas comerciales demostraron presencia de compuestos fenólicos, incluyendo antocianinas; sin embargo, se encontraron diferencias significativas en el contenido de compuestos fenólicos y actividad anti-radical, entre los diferentes productores de tisanas. Por ello, se concluye que en el mercado costarricense, el perfil en compuestos fenólicos de las tisanas en estudio varía de acuerdo con el productor.

  8. Microbial Communities as Environmental Indicators of Ecological Disturbance in Restored Carbonate Fen-Results of 10 Years of Studies.

    Science.gov (United States)

    Mieczan, Tomasz; Tarkowska-Kukuryk, Monika

    2017-08-01

    Interactions between bacteria and protists are essential to the ecosystem ecology of fens. Until now, however, there has been almost no information on how restoration procedures in carbonate fens affect the functioning of microbial food webs. Changes in vegetation patterns resulting from restoration may take years to be observed, whereas microbial processes display effects even after short-term exposure to changes in environmental conditions caused by restoration. Therefore, microbial processes and patterns can be used as sensitive indicators of changes in environmental conditions. The present study attempts to verify the hypothesis that the species richness and abundance of microbial loop components would differ substantially before and after restoration. The effect of restoration processes on the functioning of the food web was investigated for a 10 years in a carbonate-rich fen, before and after restoration. The restoration procedure (particularly the improvement in hydrological conditions) distinctly modified the taxonomic composition and functioning of microbial food webs. This is reflected in the increased abundance and diversity of testate amoeba, i.e. top predators, within the microbial food web and in the pronounced increase in the abundance of bacteria. This study suggests potential use of microbial loop components as bio-indicators and bio-monitoring tools for hydrological status of fens and concentrations of nutrients. Better understanding of what regulates microbial populations and activity in fens and unravelling of these fundamental mechanisms are particularly critical in order to more accurately predict how fens will respond to global change or anthropogenic disturbances.

  9. Methane stable isotope distribution at a Carex dominated fen in North Central Alberta

    Science.gov (United States)

    Popp, Trevor J.; Chanton, Jeffrey P.; Whiting, Gary J.; Grant, Nick

    1999-12-01

    The methane stable isotope distribution was characterized at a Carex dominated fen in boreal Alberta, Canada, over three growing seasons to examine methane production, oxidation, and transport to the atmosphere; processes which are strongly tied to emergent vegetation and the influence of the rhizosphere (upper 20 cm of peat in this system]. At times when standing floodwater was present, δ13C values of emitted methane averaged -63.6 ± 2.3, -66.3 ± 1.6, and -65.4 ± 1.3‰ for the 1994, 1995, and 1996 seasons, respectively. These emissions were significantly 13C depleted relative to the belowground methane dissolved in rhizospheric pore waters, indicating that gas transport in Carex is dominated by passive diffusion. The rhizosphere was 13CH4 enriched relative to depths below the rhizosphere, consistent with the occurrence of root associated methane oxidation, preferential mobilization of 13CH4, and a relatively greater role of acetate fermentation type methane production. Dual isotope tracers, δ13C and δD, help qualify the role of each of these processes and aid in describing the distribution of production pathways, CO2 reduction, and acetate fermentation. Inverse trends in δ13C-CH4 and δD-CH4 depth profiles are consistent with an interpretation suggesting an evolution toward methane production by CO2 reduction with increasing depth. A shift in production mechanisms appears to be the dominate process affecting the stable isotope distribution below 10 cm in the peat column, while oxidation and transport isotope effects are dominant above 10 cm. To test several hypotheses regarding the effects of transport, oxidation, and production on methane isotope distributions, we also present measurements from sites fertilized and sites devegetated (continually clipped) over the 3 year period. Removal of vegetation quickly halted rhizospheric methane oxidation and gas transport while gradually increasing the relative role of CO2 reduction in net methane production as

  10. Hipertemia durante el fenómeno de el niño, 1997-98

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    Jaime Miranda M

    2003-10-01

    Full Text Available Objetivo: Describir el cuadro clínico y la evolución de los casos de síndrome febril presentados durante el fenómeno de "El Niño" de 1997-98, y presentar una revisión de la fisiopatología del cuadro de hipertermia. Material y métodos: Se realizó un estudio descriptivo longitudinal en la ciudad de Chimbote, Ancash. Se definió como caso de síndrome febril: niños menores de 5 años con fiebre refractaria al uso de antipiréticos sin foco aparente de infección. En el análisis posterior se consideraron: apariencia no tóxica, previamente sano, sin foco de infección al examen físico y con examen de laboratorio negativo. Resultados: Fueron estudiados 25 casos (68% varones, 80% con edades entre 5 y 18 meses con un tiempo de enfermedad promedio de 15,17(13,52 días ± desviación stándar (±DS. La mediana de la temperatura fue 38,8ºC con un promedio de 38,84ºC (rango 38 - 40ºC. 68% tuvo un tiempo de enfermedad mayor de 15 días; 52% había visitado al menos una vez un centro médico anterior; 68% recibió antibióticos y antipiréticos; y, 52 % ingresó al hospital por emergencia. Todos los casos presentaron alza térmica, asociado a piel seca (72%, diarrea (64%, tos (52%, baja de peso (52%, irritabilidad (44%, náuseas o vómitos (40%, rinorrea (24% y convulsiones (20%. El tiempo de hospitalización promedio fue 4,7 días y el estado febril promedio fue 2,5 días. Ninguno tuvo examen de laboratorio compatible con causa infecciosa. Conclusiones: En situaciones ambientales adversas debe considerarse al calor ambiental como un factor importante en el desarrollo de la hipertermia, con el propósito de brindar un manejo más apropiado a los afectados en el menor tiempo posible.

  11. Whole genome mRNA transcriptomics analysis reveals different modes of action of the diarrheic shellfish poisons okadaic acid and dinophysis toxin-1 versus azaspiracid-1 in Caco-2 cells.

    Science.gov (United States)

    Bodero, Marcia; Hoogenboom, Ron L A P; Bovee, Toine F H; Portier, Liza; de Haan, Laura; Peijnenburg, Ad; Hendriksen, Peter J M

    2018-02-01

    A study with DNA microarrays was performed to investigate the effects of two diarrhetic and one azaspiracid shellfish poison, okadaic acid (OA), dinophysistoxin-1 (DTX-1) and azaspiracid-1 (AZA-1) respectively, on the whole-genome mRNA expression of undifferentiated intestinal Caco-2 cells. Previously, the most responding genes were used to develop a dedicated array tube test to screen shellfish samples on the presence of these toxins. In the present study the whole genome mRNA expression was analyzed in order to reveal modes of action and obtain hints on potential biomarkers suitable to be used in alternative bioassays. Effects on key genes in the most affected pathways and processes were confirmed by qPCR. OA and DTX-1 induced almost identical effects on mRNA expression, which strongly indicates that OA and DTX-1induce similar toxic effects. Biological interpretation of the microarray data indicates that both compounds induce hypoxia related pathways/processes, the unfolded protein response (UPR) and endoplasmic reticulum (ER) stress. The gene expression profile of AZA-1 is different and shows increased mRNA expression of genes involved in cholesterol synthesis and glycolysis, suggesting a different mode of action for this toxin. Future studies should reveal whether identified pathways provide suitable biomarkers for rapid detection of DSPs in shellfish. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

  12. Revealing Rembrandt

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    Andrew J Parker

    2014-04-01

    Full Text Available The power and significance of artwork in shaping human cognition is self-evident. The starting point for our empirical investigations is the view that the task of neuroscience is to integrate itself with other forms of knowledge, rather than to seek to supplant them. In our recent work, we examined a particular aspect of the appreciation of artwork using present-day functional magnetic resonance imaging (fMRI. Our results emphasised the continuity between viewing artwork and other human cognitive activities. We also showed that appreciation of a particular aspect of artwork, namely authenticity, depends upon the co-ordinated activity between the brain regions involved in multiple decision making and those responsible for processing visual information. The findings about brain function probably have no specific consequences for understanding how people respond to the art of Rembrandt in comparison with their response to other artworks. However, the use of images of Rembrandt’s portraits, his most intimate and personal works, clearly had a significant impact upon our viewers, even though they have been spatially confined to the interior of an MRI scanner at the time of viewing. Neuroscientific studies of humans viewing artwork have the capacity to reveal the diversity of human cognitive responses that may be induced by external advice or context as people view artwork in a variety of frameworks and settings.

  13. Voces actuales en el fenómeno de pasantes de drogas ilícitas en Colombia

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    Galia J. Benítez

    2017-12-01

    Full Text Available Este documento se deriva del análisis realizado a las narrativas de los pasantes de drogas ilícitas denominados popularmente como “mulas”; de manera especial, resalta su mirada localizada sobre el fenómeno del tráfico ilegal de drogas en Colombia. El escrito tiene como objetivo: primero, caracterizar la multiplicidad de conceptos que se utilizan para describir este fenómeno y proponer una definición que abarque diferentes acepciones, y segundo, presentar categorías conceptuales que se desprenden de las narrativas de los pasantes de drogas. Como metodología se utilizó el análisis de contenido, para describir, sistematizar y analizar los testimonios voluntarios de 42 personas imputadas y condenadas como pasantes de drogas ilícitas en Colombia. Esta investigación argumenta que uno de los elementos para entender el fenómeno de los pasantes de drogas ilícitas y su experiencia es su condición de vulnerabilidad. Por un lado, los pasantes ocupan un lugar periférico en las organizaciones narcotraficantes; por otro, son altamente vulnerables al sistema socio-técnico establecido por el Estado para prevenir el transporte de drogas ilícitas. Este estudio muestra que las narrativas de los pasantes de drogas se pueden categorizar en cuatro dicotomías, que sirven como elementos retóricos para la ruptura del binario legalidad/ilegalidad.

  14. Water stress index for alkaline fen habitat based on UAV and continuous tower measurements of canopy infrared temperature

    Science.gov (United States)

    Ciężkowski, Wojciech; Jóźwiak, Jacek; Chormański, Jarosław; Szporak-Wasilewska, Sylwia; Kleniewska, Małgorzata

    2017-04-01

    This study is focused on developing water stress index for alkaline fen, to evaluate water stress impact on habitat protected within Natura 2000 network: alkaline fens (habitat code:7230). It is calculated based on continuous measurements of air temperature, relative humidity and canopy temperature from meteorological tower and several UAV flights for canopy temperature registration. Measurements were taken during the growing season in 2016 in the Upper Biebrza Basin in north-east Poland. Firstly methodology of the crop water stress index (CWSI) determination was used to obtained non-water stress base line based on continuous measurements (NWSBtower). Parameters of NWSBtower were directly used to calculate spatial variability of CWSI for UAV thermal infrared (TIR) images. Then for each UAV flight day at least 3 acquisition were performed to define NWSBUAV. NWSBUAV was used to calculate canopy waters stress for whole image relative to the less stressed areas. The spatial distribution of developed index was verified using remotely sensed indices of vegetation health. Results showed that in analysed area covered by sedge-moss vegetation NWSB cannot be used directly. The proposed modification of CWSI allows identifying water stress in alkaline fen habitats and was called as Sedge-Moss Water Stress Index (SMWSI). The study shows possibility of usage remotely sensed canopy temperature data to detect areas exposed to the water stress on wetlands. This research has been carried out under the Biostrateg Programme of the Polish National Centre for Research and Development (NCBiR), project No.: DZP/BIOSTRATEG-II/390/2015: The innovative approach supporting monitoring of non-forest Natura 2000 habitats, using remote sensing methods (HabitARS).

  15. Violência como fenômeno intrínseco à cultura política brasileira

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    Antonio M. Soares

    2016-06-01

    Full Text Available Este artigo problematiza o conceito de violência e suas mutações através dos tempos. Como fenômeno cultural, a violência é construída na sociedade e se processa de forma a romper com os próprios códigos de ordens produzidos por ela. No caso do Brasil a violência se mostra intrínseca ao processo de formação da sociedade brasileira, estando presente nas lógicas autoritárias e na imposição cultural desde os tempos da colonização. A violência emerge como uma agressão ao indivíduo e ao coletivo, ela aniquila o sentido da política e desabilita o mundo comum. As interpretações presentes neste trabalho buscam aprofundar as análises sobre a violência enquanto fenômeno social e cultural, redimensionando os efeitos que ela produz para a condição humana e suas associações com as dimensões da civilidade, incivilidade e descivilidade. Neste contexto, destacaremos como o fenômeno da violência se afirmou como uma dimensão estrutural e cultural da formação da sociedade brasileira, como ele se revela na contemporaneidade, nos jogos de poder, nas relações de força e no movimento de fronteiras tênues entre o legal e o ilegal.

  16. Lucio's phenomenon: another case reported in Brazil Fenômeno de Lúcio: mais um caso relatado no Brazil

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    Rodrigo Monteiro

    2012-04-01

    Full Text Available Lucio's phenomenon is defined as a variant of type 2 leprosy reaction. It is a rare event, occurring in the evolution of leprosy of Lucio and other forms of lepromatous leprosy. It has an exacerbated proliferation of Hansen bacilli in its pathophysiology, which invade blood vessel walls and injure endothelial cells, causing endothelial proliferation and decreasing the vascular lumen. This fact, associated with inflammatory reactions and changes in the coagulation system causes vascular thrombosis, ischemia, infarction and tissue necrosis, leading to the histopathological characteristic of the phenomenon. We report a case of lepromatous leprosy with irregular treatment that developed Lucio's phenomenon. Treatment with multidrug therapy, antibiotics, steroids and thalidomide achieved a favorable outcome.Define-se o fenômeno de Lúcio como uma variante da reação hansênica do tipo 2. Evento raro, que ocorre na evolução da hanseníase de Lúcio e de outras formas de hanseníase virchowiana. Tem na sua fisiopatologia uma proliferação exacerbada dos bacilos de Hansen, que invadem a parede dos vasos sanguíneos e agridem as células endoteliais, causando proliferação endotelial e diminuição do lúmen vascular, fato este, que associado a reações inflamatórias e a alterações no sistema da coagulação, causa trombose vascular, isquemia, infarto e necrose tecidual, gerando as alterações histopatológicas características do fenômeno. Relatamos um caso de hanseníase virchowiana, com tratamento irregular, que desenvolveu o fenômeno de Lúcio. Recebeu tratamento com poliquimioterapia, antibióticos, corticosteróide e talidomida, evoluindo com desfecho clínico favorável.

  17. Estudo do comportamento fotofísico de prepregs de fibra de vidro e resina fenólica.

    OpenAIRE

    Rogério da Silva Rosa

    2007-01-01

    O objetivo desse trabalho é a aplicação da Espectroscopia de Luminescência em modo estacionário para o estudo do processo de cura de pré-impregnados (prepregs) de fibra de vidro e resina fenólica, tratadas termicamente em três diferentes temperaturas 90, 120 e 150 C. O processo de cura dos prepregs também foi monitorado por Espectroscopia de absorção na região do Infravermelho com transformada de Fourier (FT-IR). Os espectros de luminescência dos prepregs mostram mudanças significativas atrib...

  18. Hydrometeorological conditions preceding wildfire, and the subsequent burning of a fen watershed in Fort McMurray, Alberta, Canada

    Science.gov (United States)

    Elmes, Matthew C.; Thompson, Dan K.; Sherwood, James H.; Price, Jonathan S.

    2018-01-01

    The destructive nature of the ˜ 590 000 ha Horse river wildfire in the Western Boreal Plain (WBP), northern Alberta, in May of 2016 motivated the investigation of the hydrometeorological conditions that preceded the fire. Historical climate and field hydrometeorological data from a moderate-rich fen watershed were used to (a) identify whether the spring 2016 conditions were outside the range of natural variability for WBP climate cycles, (b) explain the observed patterns in burn severity across the watershed, and (c) identify whether fall and winter moisture signals observed in peatlands and lowland forests in the region are indicative of wildfire. Field hydrometeorological data from the fen watershed confirmed the presence of cumulative moisture deficits prior to the fire. Hydrogeological investigations highlighted the susceptibility of fen and upland areas to water table and soil moisture decline over rain-free periods (including winter), due to the watershed's reliance on supply from localized flow systems originating in topographic highs. Subtle changes in topographic position led to large changes in groundwater connectivity, leading to greater organic soil consumption by fire in wetland margins and at high elevations. The 2016 spring moisture conditions measured prior to the ignition of the fen watershed were not illustrated well by the Drought Code (DC) when standard overwintering procedures were applied. However, close agreement was found when default assumptions were replaced with measured duff soil moisture recharge and incorporated into the overwintering DC procedure. We conclude that accumulated moisture deficits dating back to the summer of 2015 led to the dry conditions that preceded the fire. The infrequent coinciding of several hydrometeorological conditions, including low autumn soil moisture, a modest snowpack, lack of spring precipitation, and high spring air temperatures and winds, ultimately led to the Horse river wildfire spreading widely and

  19. El abstencionismo como fenómeno político en la sociedad contemporánea

    OpenAIRE

    López Sánchez, Rogelio

    2013-01-01

    El objetivo de la presente contribución es analizar el abstencionismo como fenómeno político. En este sentido, se examinan las distintas facetas del mismo con la finalidad de acercarnos hacia un modelo de participación cívica racional en el contexto mexicano. Igualmente, se lleva a cabo una crítica en contra del monopolio partidista que deja a los ciudadanos un pequeño margen de cuestiones políticas en las cuales puedan tomar parte. This paper intention is to analyze the abstentionism as a...

  20. Degradação de xenobióticos por fungos filamentosos isolados de areia fenólica

    OpenAIRE

    J. H. Silva; R. T. R. Monteiro

    2000-01-01

    Microrganismos foram isolados de areia fenólica resultante de atividades metalúrgicas, utilizando meio mínimo para fungos e pentaclorofenol (PCF) como única fonte de carbono. Após quatro repiques sucessivos em intervalos de 15 dias de incubação, as culturas foram plaqueadas em meio de Martin. Três gêneros de fungos foram isolados e identificados como Acremonium sp., Paecilomyces sp. e Penicillium sp. Estes foram testados para degradar os corantes índigo e RBBR (Azul Brilhante de Remazol - R) ...

  1. Perspectivas acerca del autismo: el problema de la relación fenómeno-estructura

    OpenAIRE

    Sosa, Martín; Gascón, María Constanza

    2015-01-01

    El presente trabajo se inscribe en el proyecto de investigación en vigencia denominado "Las variedades del autismo: sistematización y evaluación de la demanda asistencial. Segunda etapa" (2015/2016) aprobado y subsidiado por la Facultad de Psicología de la Universidad Nacional de La Plata. Examinaremos en esta ocasión diversas perspectivas dentro de la orientación lacaniana respecto de la relación fenómeno-estructura en el campo de lo que se denomina autismo. Dichas perspectivas van desde la ...

  2. Metódica: Articulación sistema teórico, fenómeno y procesos en el objeto de estudio. Una perspectiva desde el fenómeno pobreza

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    Yajaira Jiménez Zabala

    2011-10-01

    Full Text Available En este artículo discutimos la visión metódica que toma como apoyo el pivote entre lo cualitativo, lo cuantitativo y el orden de complejidad, en un enfoque plurimetódico, a través del cual se construyó la visión de la pobreza como objeto de estudio. Tal selección, está justificada en tanto se entiende la pobreza como un fenómeno social complejo, por las diversas aristas que le identifican. La combinación de los enfoques metodológicos permitió la aprehensión de los diferentes aspectos del fenómeno y de sus interrelaciones en las representaciones de los actores sociales vinculados con el estudio. Lo cualitativo, se entiende como la simbiosis de prácticas interpretativas, que no privilegia una metodología sobre otra. Lo cuantitativo estuvo referido al uso de indicadores derivados de los soportes referenciales del problema; el orden de complejidad, atendió a la manifestación de lo simple en tanto nodo tensional complejo, que requiere una mirada diferente para su comprensión e interpretación.

  3. Registros del fenómeno El Niño en el Perú

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    1993-01-01

    Full Text Available ENREGISTREMENTS DU PHENOMENE EL NIÑO AU PEROU. El Niño est un phénomène typique de la variabilité climatique interannuelle au Pérou. Au même titre que la détection et la modélisation des paramètres océano-atmosphériques actuels, la compréhension de ce phénomène nécessite une reconstruction détaillée de son histoire passée. Au Pérou, les événements d‘El Niño ont été enregistrés dans des archives paléoclimatiques de divers types dont les caractéristiques, telles que durée, fiabilité et résolution seront analysées ici. Des conditions climatiques proches de celles d’El Niño semblent s’être présentées sur la côte péruvienne déjà depuis le dernier interglaciaire. Mais c’est depuis 4,500 ans que se sont répétés des événements dont les effets sont similaires à ceux des El Niño actuels. Des archives naturelles telles que des dépôts d’inondation et des séquences de cordons littoraux, datés par carbone-14, ont permis d’établir la chronologie de quelques huit grands événements - appelés Super-ENSO par certains auteurs - jusqu’à il y a 400 ans. L’Archéologie et l’Ethno-histoire offrent des données dont la corrélation croisée permet de renforcer la certitude de certains événements. À partir du 16ème siècle, les archives historiques fournissent des précieuses données pour la reconstruction de la succession des événements El Niño jusqu’au début du 20ème siècle on constate une amélioration du niveau de détection vers les dates récentes. La disponibilité d’enregistrements instrumentaux pendant le siècle actuel a permis une amélioration de la résolution dans le temps et de l’intensité mais elle a rendu difficile la distinction d’événements de moindre intensité (faibles ou modérés des oscillations climatiques «normales» et des épisodes dits anti-Niño. El Niño es un fenómeno característico de la variabilidad climática interanual en el Perú. A la par con los

  4. El fenómeno del acoso laboral entre los trabajadores de la universidad O fenômeno mobbing entre os trabalhadores da universidade The phenomenon of mobbing among university employees

    Directory of Open Access Journals (Sweden)

    Fernando Justicia Justicia

    2007-12-01

    Full Text Available El objetivo del artículo es realizar una descripción del fenómemo mobbing -acoso laboral- en el contexto de la universidad. Los trabajos realizadossobre este problema no son muy prolíficos lo que puede explicar la gran dificultad para caracterizar el fenómeno en el ámbito universitario. En el presente trabajo presentamos los niveles de incidencia del acoso laboral entre la población universitaria, los tipos de acoso más frecuentes y los efectos producidos en las víctimas, con la finalidad de caracterizar y definir el problema. Al mismo tiempo, intentamos conocer la influencia de determinadas variables como la edad, género y tiempo de victimización. En este sentido, y de acuerdo con otros estudios realizados, encontramos diferencias estadísticas en función del género de las víctimas. Del mismo modo, los resultados apuntan que la frecuencia y duración del acoso laboral afectan negativamente a las víctimas provocando un empeoramiento de los efectos derivados del acoso.O objetivo deste artigo é realizar uma descrição do fenômeno mobbing -tormento e persecução no lugar do trabalho- no contexto da universidade. Há poucos trabalhos realizados sob este problema nos contextos de educação superior o que pode explicar a grande dificuldade para caracterizar o fenômeno no âmbito universitário. Neste artigo apresentamos os níveis de incidência entre a população universitária, os tipos de mobbing mais freqüentes e os efeitos produzidos nas vítimas com a finalidade de caracterizar e definir o problema. Ao mesmo tempo, tentamos conhecer a influência de determinadas variáveis tais como a idade, gênero ou o tempo de exposição ao fenômeno. Neste sentido, e em concordância com outros estudos realizados, encontramos diferenças estatísticas em função do gênero das vítimas. De igual forma, os dados apontam que a freqüência e duração da situação de persecução no trabalho afetam negativamente as vítimas provocando

  5. Influência dos compostos fenólicos de especiarias sobre a lipoperoxidação e o perfil lipídico de tecidos de ratos Influence of spices phenolic compounds on lipoperoxidation and lipid profile of rats tissues

    Directory of Open Access Journals (Sweden)

    Ana Vládia Bandeira Moreira

    2004-12-01

    Full Text Available OBJETIVO: Este trabalho avaliou o efeito antioxidante dos compostos fenólicos de uma mistura de especiarias (mostarda, canela e erva-doce sobre o metabolismo dos ácidos graxos das séries ômega3 e ômega6. MÉTODOS: Ratos Wistar recém desmamados receberam dieta rica em gorduras essenciais e um chá de especiarias. Após 45 dias, os animais foram sacrificados e tiveram seus tecidos coletados para análise das substâncias reativas ao ácido tiobarbitúrico e perfil lipídico. RESULTADOS: O chá fornecido aos animais apresentou atividade antioxidante equivalente ao hidroxitolueno butilado. Foram identificados no chá, os ácidos fenólicos catecol, salicílico e caféico; as enzimas cicloxigenase e lipoxigenase foram inibidas pelos extratos ricos nestes ácidos fenólicos. O perfil de ácidos graxos apresenta diferença entre os grupos teste e controles. Todos os tecidos dos grupos teste apresentaram menores valores em lipoperoxidação, em comparação aos controles. CONCLUSÃO: Estes dados sugerem, portanto, um efeito antioxidante das substâncias fenólicas identificadas na mistura das especiarias, sobre os ácidos graxos das séries ômega3 e ômega6.OBJECTIVE: This work analyzed the influence of the phenolic compounds from a blend of spices (mustard, cinnamon and anise on the omega3 and omega6 fatty acids metabolism. METHODS: Weaned Wistar rats received a diet rich in essencial lipids and an infusion of blended spices for 45 days. After that period, they were sacrificed their tissues were collected and analized for the TBARS and lipid profile by CGMS. RESULTS: The tea of spices showed an antioxidant activity equivalent to that of the butylated hydroxytoluene. The following phenolic acids were identified in the infusion, using mass chromatography: cathecol, salicilic and cafeic; Lipooxygenase and ciclooxigenase enzymes were inhbited by the phenolic acid extracts. It was observed that the total amount of the fatty acids found in the test

  6. Cyberbullying: percepções acerca do fenômeno e das estratégias de enfrentamento

    Directory of Open Access Journals (Sweden)

    Sidclay Bezerra Souza

    2014-01-01

    Full Text Available O cyberbullying, caracterizado como um dos tipos de violência em contexto educativo, apresenta-se como uma das principais causas do mal-estar vivido por seus protagonistas. O estudo inserido no Projeto Cyberbullying - o diagnóstico da situação em Portugal pretendeu compreender o fenômeno a partir das vivências de 118 estudantes do primeiro ano do Ensino Superior público português, que responderam a um questionário. Pudemos perceber a percepção dos alunos sobre o fenômeno e a importância que pares, professores e pais apresentam no enfrentamento e prevenção do cyberbullying. Tais resultados orientam-se no sentido do desenvolvimento sistêmico de comunidades que se fortalecem internamente para que cada um se sinta autorizado a intervir e a cuidar dos que nelas são vítimas de violência.

  7. Degradação de xenobióticos por fungos filamentosos isolados de areia fenólica

    Directory of Open Access Journals (Sweden)

    J. H. Silva

    2000-09-01

    Full Text Available Microrganismos foram isolados de areia fenólica resultante de atividades metalúrgicas, utilizando meio mínimo para fungos e pentaclorofenol (PCF como única fonte de carbono. Após quatro repiques sucessivos em intervalos de 15 dias de incubação, as culturas foram plaqueadas em meio de Martin. Três gêneros de fungos foram isolados e identificados como Acremonium sp., Paecilomyces sp. e Penicillium sp. Estes foram testados para degradar os corantes índigo e RBBR (Azul Brilhante de Remazol - R e o organoclorado PCF. A descoloração do índigo foi de 99%, para Paecilomyces e Penicillium, e de 74%, para Acremonium, e a de RBBR foi de 16%, para Penicillium; 14%, para Acremonium, e 5%, para Paecilomyces. Usando azul de bromotimol como indicador de degradação de PCF, foram obtidos 24% de descoloração para Acremonium; 22%, para Penicillium, e 17%, para Paecilomyces Utilizando cromatografia gasosa, detectou-se degradação de PCF de 69%, para Penicillium; 65%, para Paecilomyces, e 40% para Acremonium, respectivamente. Os resultados mostraram que foi possível isolar microrganismos de uma areia de fundição, altamente contaminada com fenóis, e os fungos isolados foram capazes de degradar PCF e outros xenobióticos testados.

  8. Greenhouse gas emissions from a drained fen peatland cultivated with reed canary grass for biogas production

    Energy Technology Data Exchange (ETDEWEB)

    Kandel, T.P.

    2013-10-01

    Cultivated peatlands are significant sources of CO{sub 2} as the drainage and subsequent agricultural practices such as tillage and fertilization enhances the decomposition of soil organic carbon. However, use of the peatlands for perennial energy crop production could help to reduce the CO{sub 2} emissions as annual ploughing is avoided in perennial cropping systems and fertilizer requirements is also lower compared to annual arable crops. However, crop managements such as fertilization and harvesting of those energy crops are also important in respect to total GHG balance. Moreover, economical viability of energy crop production in peatland need to be considered which requires studies on best management practices to produce high biomass and energy per hectare of land with as little input of resources as possible. In the first study, annual net ecosystem balance of CO{sub 2} from a riparian fen peatland used for annual arable crop and perennial energy crop cultivation was compared. Fluxes of CO{sub 2} were measured with closed chambered methods which were later partitioned into light depended gross photosynthesis (GP) and light independent ecosystem respiration (R{sub E}). The annual flux of CO{sub 2} was estimated by modelling GP and R{sub E} separately and extrapolating the obtained parameters in relation to environmental and biomass measurements. Model performances of commonly used GP and R{sub E} models were enhanced by introducing ratio vegetation index (RVI) as proxy for active leaf area index. Both GP and R{sub E} showed strong seasonal pattern as expected. An expected higher annual GP was observed in the RCG cultivation system which was favored by a longer growth period, but R{sub E} was also higher which was mainly contributed by higher plant respiration. Annual net ecosystem exchange (NEE) of CO{sub 2} was close to zero for both cropping systems and thus no apparent advantage of the energy cropping system was observed during crop cultivation. Another

  9. HAB1–SWI3B Interaction Reveals a Link between Abscisic Acid Signaling and Putative SWI/SNF Chromatin-Remodeling Complexes in Arabidopsis[C][W

    Science.gov (United States)

    Saez, Angela; Rodrigues, Americo; Santiago, Julia; Rubio, Silvia; Rodriguez, Pedro L.

    2008-01-01

    Abscisic acid (ABA) has an important role for plant growth, development, and stress adaptation. HYPERSENSITIVE TO ABA1 (HAB1) is a protein phosphatase type 2C that plays a key role as a negative regulator of ABA signaling; however, the molecular details of HAB1 action in this process are not known. A two-hybrid screen revealed that SWI3B, an Arabidopsis thaliana homolog of the yeast SWI3 subunit of SWI/SNF chromatin-remodeling complexes, is a prevalent interacting partner of HAB1. The interaction mapped to the N-terminal half of SWI3B and required an intact protein phosphatase catalytic domain. Bimolecular fluorescence complementation and coimmunoprecipitation assays confirmed the interaction of HAB1 and SWI3B in the nucleus of plant cells. swi3b mutants showed a reduced sensitivity to ABA-mediated inhibition of seed germination and growth and reduced expression of the ABA-responsive genes RAB18 and RD29B. Chromatin immunoprecipitation experiments showed that the presence of HAB1 in the vicinity of RD29B and RAB18 promoters was abolished by ABA, which suggests a direct involvement of HAB1 in the regulation of ABA-induced transcription. Additionally, our results uncover SWI3B as a novel positive regulator of ABA signaling and suggest that HAB1 modulates ABA response through the regulation of a putative SWI/SNF chromatin-remodeling complex. PMID:19033529

  10. Compostos fenólicos e capacidade antioxidante de cultivares de uvas Vitis labrusca L. e Vitis vinifera L. Phenolic compounds and antioxidant activity of Vitis labrusca and Vitis vinifera cultivars

    Directory of Open Access Journals (Sweden)

    Lucile Tiemi Abe

    2007-06-01

    Full Text Available O conteúdo de compostos fenólicos, incluindo resveratrol, antocianinas e outros flavonóides, e a capacidade antioxidante de cinco cultivares de uvas produzidas em Minas Gerais foram determinados. O conteúdo de fenólicos totais, determinado através do método de Folin-Ciocalteau variou significativamente, entre 65 ± 1 e 390 ± 30 mg equivalentes de ácido gálico.100 g -1 de amostra base úmida (b.u.. O conteúdo de antocianinas totais quantificado por CLAE variou entre 6,7 ± 0,2 e 154 ± 4 mg equivalentes de cianidina.100 g -1 (b.u.. Outros flavonóides encontrados foram catequina, epicatequina, quercetina, caempferol além dos ácidos hidroxicinâmicos. O resveratrol foi encontrado em três cultivares, variando entre 0,022 ± 0,001 e 0,60 ± 0,03 mg.100 g -1 (b.u.. A capacidade antioxidante foi analisada usando o método de seqüestro de radicais livres do DPPH (2,2-difenil-1-picrilhidrazila, que variou entre 2,7 ± 0,1 e 19 ± 2 µmoles equivalentes de Trolox.g -1 de amostra (b.u., mostrando boa correlação com o conteúdo de fenólicos totais. As uvas tintas de coloração mais escura apresentaram maior conteúdo de antocianinas, e conseqüentemente maior teor de fenólicos totais e capacidade antioxidante.Phenolic compounds including resveratrol, anthocyanins and other flavonoids and antioxidant capacity were evaluated for five grape cultivars cultivated in Minas Gerais (Brazil. The content of total phenolic determined by the Folin Ciocalteau method varied significantly, from 65 ± 1 to 390 ± 30 mg gallic acid equivalents.100 g -1 of FW (Fresh Weight. The content of total anthocyanins quantified by HPLC varied from 6.7 ± 0.2 to 154 ± 4 mg of cyanidin equivalents.100 g -1 FW. Resveratrol was found in three cultivars, in contents from 0.022 ± 0.001 to 0.60 ± 0.03 mg.100 g¹ of FW. In addition to hydroxicynnamic acids, other flavonoids such as catechin, epicatechin, quercetin and kaempferol were also present. The antioxidant

  11. Nitrogen Dynamics Along a Headwater Stream Draining a Fen, Swamp, and Marsh in a Fractured Dolomite Watershed

    Science.gov (United States)

    Duval, T. P.; Waddington, J. M.

    2009-05-01

    Stream-wetland interaction has been shown to have a significant effect on nutrient cycling and downstream water quality. Additionally, connection to regional groundwater systems can dilute or enrich stream water with a number of dissolved constituents. This study demonstrates the resultant downstream change in dissolved nitrogen species as a hardwater stream emerges from a calcareous aquifer and traverses a calcareous fen, a cedar swamp, and a cattail marsh over two growing seasons, a very dry 2006 and a very wet 2007. Upon emergence at a number of groundwater seeps, the water contained appreciable nitrate levels averaging 2.72±0.42 mg NO3-N L-1, minimal organic nitrogen, and ammonium below detectable levels. Through the gently sloping calcareous fen, with a stream residence time of ~ 5 hours, NO3-N concentration decreases of 0.35 mg L-1 were observed. Concomitantly, stream recharge into the dolomite bedrock depressed stream discharge values significantly, further removing nitrate from the stream system. This resulted in the fen-bedrock system acting as an estimated net sink of 432 kg of NO3-N in the early summer of 2007, for example. In contrast, the hydrological-biogeochemical systems became decoupled through the swamp during the same period, where concentrations increased from 2.58±0.34 mg L-1 entering the swamp to 2.65±0.58 mg L-1 exiting, but streamflow decreased in general by 5 L s- 1. This resulted in the swamp, with its large depression storage, acting as a small net sink of nitrate (75 kg through the early summer), which would not be detected simply from concentration changes. The concentration-discharge relation realigned through the marsh, where significant groundwater entered the wetland, increasing both concentration and discharge, yielding a small export of 93 kg over the same time period. A series of tracer injections in each wetland type will be presented to compare the streamflow- concentration patterns with the measured nutrient spiralling

  12. The influence of vegetation structure on spider species richness, diversity and community organization in the Apšuciems calcareous fen, Latvia

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    Štokmane, M.

    2016-07-01

    Full Text Available Calcareous fens are considered to be among the most threatened ecosystems of Europe. They are also one of the most diverse habitats as they support an incredibly rich and diverse range of plant and animal species. However, in spite of their diversity, calcareous fens are still poorly investigated, especially when referring to fen invertebrates, such as spiders. Because spiders are good bioindicators, knowledge of their ecology in rare and threatened habitats is of interest. The aim of this study was to document the composition and diversity of spider species, families and foraging guilds in the ground– and grass–layers of the Apšuciems calcareous fen, and to evaluate the influence of vegetation structure on spider community organization. In summer 2012, we collected ground–dwelling spiders using pitfall traps and grass–dwelling spiders using sweep–netting. A total of 2,937 spider individuals belonging to 19 families and 80 species was collected in the Apšuciems fen. Our results indicate that spider species and families tend to be stratified across the vertical structure of the habitat; the spider composition in the ground stratum differed from that in the grass stratum. On the contrary, however, the spider foraging guild structure between the ground–layer and the grass–layer was similar. Each of the two studied strata presented similar guilds in similar proportions. Our results also showed that spider composition differed considerably between fen parts and that much of this variability could be explained by the architectural properties of the habitat. More diverse vegetation generally supported a higher number of spider species.

  13. The influence of vegetation structure on spider species richness, diversity and community organization in the Apšuciems calcareous fen, Latvia

    Energy Technology Data Exchange (ETDEWEB)

    Štokmane, M.; Spuņģis, V.

    2016-07-01

    Calcareous fens are considered to be among the most threatened ecosystems of Europe. They are also one of the most diverse habitats as they support an incredibly rich and diverse range of plant and animal species. However, in spite of their diversity, calcareous fens are still poorly investigated, especially when referring to fen invertebrates, such as spiders. Because spiders are good bioindicators, knowledge of their ecology in rare and threatened habitats is of interest. The aim of this study was to document the composition and diversity of spider species, families and foraging guilds in the ground– and grass–layers of the Apšuciems calcareous fen, and to evaluate the influence of vegetation structure on spider community organization. In summer 2012, we collected ground–dwelling spiders using pitfall traps and grass–dwelling spiders using sweep–netting. A total of 2,937 spider individuals belonging to 19 families and 80 species was collected in the Apšuciems fen. Our results indicate that spider species and families tend to be stratified across the vertical structure of the habitat; the spider composition in the ground stratum differed from that in the grass stratum. On the contrary, however, the spider foraging guild structure between the ground–layer and the grass–layer was similar. Each of the two studied strata presented similar guilds in similar proportions. Our results also showed that spider composition differed considerably between fen parts and that much of this variability could be explained by the architectural properties of the habitat. More diverse vegetation generally supported a higher number of spider species. (Author)

  14. Free energy landscape of electrocatalytic CO2 reduction to CO on aqueous FeN4 center embedded graphene studied by ab initio molecular dynamics simulations

    Science.gov (United States)

    Sheng, Tian; Sun, Shi-Gang

    2017-11-01

    Experiments have found that the porphyrin-like FeN4 site in Fe-N-C materials is highly efficient for the electrochemical reduction of CO2 into CO. In this work, we investigated the reduction mechanisms on FeN4 embedded graphene layer catalyst with some explicit water molecules by combining the constrained ab initio molecular dynamics simulations and thermodynamic integrations. The reaction free energy and electron transfer in each elementary step were identified. The initial CO2 activation was identified to go through the first electron transfer to form adsorbed CO2- anion and the CO desorption was the rate limiting step in the overall catalytic cycle.

  15. De columbine à virgínia tech: reflexões com base empírica sobre um fenômeno em expansão

    OpenAIRE

    Vieira,Timoteo Madaleno; Mendes,Francisco Dyonísio Cardoso; Guimarães,Leonardo Conceição

    2009-01-01

    O fenômeno conhecido como school shooting vem chamando a atenção do mundo, principalmente após a tragédia na Columbine High School, na cidade de Littleton, Colorado, nos Estados Unidos, em 1999. Posteriormente, em abril de 2007, o estudante Cho Seung-Hui protagonizou um massacre de proporções ainda maiores ao atirar contra estudantes do Virginia Polytechnic Institute and State University, matando 32 pessoas e se suicidando ao final. O presente artigo reflete sobre o fenômeno chamando a atençã...

  16. O fenómeno do Fansubbing em inglês: principais normas de tradução e legendagem

    OpenAIRE

    Sousa, Inês Fernandes e

    2011-01-01

    Tese de mestrado, Tradução, Universidade de Lisboa, Faculdade de Letras, 2012 Este trabalho enquadra-se no âmbito dos Estudos Descritivos de Tradução, mais concretamente, nos conceitos de norma e estratégia de tradução e teve como objectivo estudar algumas das principais estratégias e regularidades evidenciadas pelo fenómeno de “fansubbing”. Este fenómeno corresponde ao trabalho de equipas amadoras especializadas na tradução para legendagem predominantemente em inglês de desenh...

  17. Investigation of the mobilizability of persistent pollutants in the system groundwater/soil/plant of a former fen

    International Nuclear Information System (INIS)

    Hein, D.; Goertz, W.; Leisner-Saaber, J.; Rathje, M.

    1993-01-01

    For a former fen situated at the eastern border of the Lower terraces of the river Rhine in the close neighbourhood of densely populated urban districts a biotope-managementplan suggests the rewetting and restauration of typical landscape forms. High concentrations of heavy metals and low pH-values of the soil imply a potential danger especially for the groundwater. In order to solve this conflict between the aims of protecting rare biotopes and of saving groundwater-resources investigations were carried out considering all environmental compartments concerned: groundwater, surfacewater, soil and plants. The results demonstate that a step-by-step rewetting of the area is possible without a previous exchange of soil. In addition, careful groundwater control has to be carried out. (orig.) [de

  18. Magnetization switching behavior with competing anisotropies in epitaxial Co3FeN /MnN exchange-coupled bilayers

    Science.gov (United States)

    Hajiri, T.; Yoshida, T.; Jaiswal, S.; Filianina, M.; Borie, B.; Ando, H.; Asano, H.; Zabel, H.; Kläui, M.

    2016-11-01

    We report unusual magnetization switching processes and angular-dependent exchange bias effects in fully epitaxial Co3FeN /MnN bilayers, where magnetocrystalline anisotropy and exchange coupling compete, probed by longitudinal and transverse magneto-optic Kerr effect (MOKE) magnetometry. The MOKE loops show multistep jumps corresponding to the nucleation and propagation of 90∘ domain walls in as-grown bilayers. By inducing exchange coupling, we confirm changes of the magnetization switching process due to the unidirectional anisotropy field of the exchange coupling. Taking into account the experimentally obtained values of the fourfold magnetocrystalline anisotropy, the unidirectional anisotropy field, the exchange-coupling constant, and the uniaxial anisotropy including its direction, the calculated angular-dependent exchange bias reproduces the experimental results. These results demonstrate the essential role of the competition between magnetocrystalline anisotropy and exchange coupling for understanding and tailoring exchange-coupling phenomena usable for engineering switching in fully epitaxial bilayers made of tailored materials.

  19. Discriminação social: Um fenómeno que atenta contra a dignidade da pessoa humana

    Directory of Open Access Journals (Sweden)

    Anselmo Orlando Pinto

    2015-06-01

    Full Text Available A aparição do outro no nosso horizonte abre a porta a diferentes comportamentos e relações. Esta é a razão pela qual o reconhecimento da humanidade não implica necessariamente a simpatia ou a boa vontade porque pode também comportar conflitos e competitividade. Pretendemos reflectir sobre o conceito da dignidade da pessoa humana e o seu significado ético, tendo em conta a questão da discriminação social, com o intuito de perceber como é que este fenómeno constitui grave atentado à dignidade do homem. A categoria moral da dignidade humana se apoia sobre a afirmação prémoral ou ôntica do valor absoluto do homem.

  20. Representação e significação nos fenômenos comunicacionais

    Directory of Open Access Journals (Sweden)

    Luís Carlos Lopes

    2001-01-01

    Full Text Available Este trabalho consiste em uma investigação teórica sobre a importância das teorias da representação, significação e interpretação para o estudo dos fenômenos comunicacionais. O autor explica o que entende por comunicação e seus estudos. Discute algumas das bases epistemológicas dos estudos comunicacionais, em termos de universalidade, particularidade e naturalização. Baseia seu trabalho nas obras de Bourdieu, Debord, Canclini, Martín-Barbero, Sloterdijk, Habermas e, fundamentalmente, na de Putnam. 

  1. Sentimentos do adolescente relacionados ao fenômeno BULLYING: possibilidades para a Assistência de Enfermagem nesse contexto

    Directory of Open Access Journals (Sweden)

    Agnes Schutz de Oliveira

    2006-04-01

    Full Text Available O bullying é um fenômeno devastador podendo vir a afetar a auto-estima e a saúde mental dos adolescentes. Geralmente ocorre quando o adolescente é mais suscetível ou vulnerável às agressões verbais ou morais que lhes causam angústia e dor, principalmente quando ocorrido em ambiente escolar traduzindo-se como uma forma de exclusão social. Pode desencadear alguns problemas de saúde tais como a anorexia, bulimia, depressão, ansiedade e até mesmo o suicídio. A enfermagem, pautada com princípios de prevenir agravos de diversos males, preocupa-se também com esta intercorrência traumática na adolescência. O objetivo deste estudo foi identificar sentimentos que possam estar relacionados com o bullying em adolescentes alunos de 5ª a 8ª séries. Tratou-se de uma pesquisa descritiva de abordagem qualitativa, realizada em uma escola de segmento religioso conveniada com o estado. A coleta de dados ocorreu auxiliada por entrevistas gravadas, posteriormente transcritas e submetidas à análise temática. Os resultados mostraram que os sentimentos relacionados ao fenômeno são múltiplos e variados, sendo categorizados como aspectos de caráter positivo, aspectos de caráter negativo e aspectos de caráter necessário.

  2. Jogos de Empresas: Abordagens ao Fenômeno, Perspectivas Teóricas e Metodológicas

    Directory of Open Access Journals (Sweden)

    Valdete de Oliveira Mrtvi

    2017-01-01

    Full Text Available Os jogos de empresas, além de utilizados no processo de ensino, também são explorados como ferramentas de pesquisa, conforme Gentry, Tice, Robertson e Gentry (1984. Este estudo, de natureza qualitativa e quantitativa, descritivo quanto aos objetivos, e caracterizado como revisão integrativa no tocante ao método, trata do seguinte problema de pesquisa: Qual o perfil da pesquisa acadêmica brasileira sobre jogos de empresas considerando a abordagem ao fenômeno e as perspectivas teóricas e metodológicas? Foram analisados 226 artigos extraídos de periódicos online, do indexador Spell e anais de eventos. Como resultado, é proposta uma tipologia para classificação das pesquisas em jogos de empresas, considerando a abordagem ao fenômeno de pesquisa e os eixos temáticos. Constatou-se a predominância de estudos que têm as simulações como objeto de pesquisa - SCOPE (77,9% -, enquanto 22,1% utilizam os jogos de empresas como ambiente de pesquisa - SCAPE. Verificou-se que 38,5% dos estudos não mencionam quaisquer das classificações metodológicas analisadas. Discute-se algumas fragilidades metodológicas identificadas nas pesquisas da área. Apesar de as classificações não serem determinantes para a qualidade de um estudo, representam importante indicador da consistência do processo de reflexão e da coesão da investigação.

  3. Informação: fenômeno e objeto de estudo da sociedade contemporânea

    Directory of Open Access Journals (Sweden)

    Nair Yumiko Kobashi

    Full Text Available O estudo da informação assume importância primordial na cultura contem-porânea, sendo tema desenvolvido por várias áreas do conhecimento. Cada disciplina deve, no entanto, identificar na informação o seu objeto específico, para que uma atividade compreensiva sobre o assunto substitua a explicação mecânica e funcionalista, largamente difundida, que não raro introduziu mais dúvidas e imprecisões do que soluções. É objetivo deste artigo discutir tanto o papel da Ciência da Informação no contexto das disciplinas que estão se constituindo, quanto a sua relevância sócio-política e econômica. Enfatiza-se a importância da elaboração conceitual para o entendimento do seu objeto e para a proposição de alternativas compreensivas do fenômeno. Conclui-se que a compreensão não se dá na amplitude do fenômeno geral, que está presente em todos os contextos disciplinares; ao contrário, ela requer a delimitação do contexto específico no qual a informação está sendo vista como valor e produtora de valor. A partir daí, os traços simplificados e fragmentados que a caracterizam serão consecutivamente analisados e substituídos através de uma abordagem que considere a complexidade da informação.

  4. La fibra óptica y el fenómeno no lineal mezcla de cuarta onda

    Directory of Open Access Journals (Sweden)

    Fabián Gómez López

    2015-12-01

    Full Text Available RESUMEN Para aprovechar de mejor manera el ancho de banda que tiene la fibra óptica, los sistemas de comunicaciones ópticos han tenido que aumentar la potencia de transmisión de las señales para poder transportar a grandes distancias la información. Debido a lo anterior, comienzan a producirse ciertos fenómenos ópticos no lineales como la mezcla de cuarta onda (Four Wave Mixing, FWM, que degradan la señal de información. En este documento se realiza un estado del arte de la fibra óptica y un estudio del fenómeno no lineal FWM, que se genera cuando dos o más señales ópticas se propagan en la fibra, lo cual conlleva a una mezcla de señales que puede generar nuevos componentes de interferencia de la señal óptica transmitida. ABSTRACT To make better use of the bandwidth that has the optical fiber, optical communications systems have had to increase the transmission power of signals to transport information over long distances. Because of this, certain nonlinear optical phenomena such as four wave mixing (Four Wave Mixing, FWM, which degrade the information signal begin to occur. Herein a state of the art of optical fiber and a study of the nonlinear FWM phenomenon, which is generated when two or more optical signals propagating in the fiber takes place, which leads to a mixture of signals that can generate new components interference of the transmitted optical signal.

  5. Mapeamento do fenômeno de pulsações não-radiais no DHR

    Science.gov (United States)

    Waelkens, A. H.; Janot Pacheco, E.

    2003-08-01

    Neste trabalho de IC, pretende-se estabelecer um mapa das características do fenômeno das pulsações não-radiais (PNR) no diagrama HR (DHR). Trata-se de oscilações que não mantém a homotecia radial. O fenômeno foi inicialmente descoberto no Sol nos anos 60 e hoje é detectado num grande número de objetos. Sua grande importância reside em que as pulsações descrevem a física da cavidade em que se propagam. As PNR são classificadas basicamente por suas frequências, amplitudes e certos números quânticos associados. Com o objetivo de descrever a variação desses parâmetros no DHR, procedeu-se a um extenso levantamento bibliográfico (artigos de revistas e outras fontes) cobrindo o tema. Compôs-se assim uma tabela, que será apresentada nesta comunicação, contendo os parâmetros físicos das estrelas (T, L, logg, M) e suas características de PNR, deduzidas a partir de observações fotométricas e/ou espectroscópicas. No momento, completamos os dados sobre as Anãs Brancas e Beta Cep. Apresentaremos no trabalho diagramas L-T com os últimos resultados obtidos, eventualmente com uma terceira dimensão que descreva características pulsacionais.

  6. Identification of Open Stomata1-Interacting Proteins Reveals Interactions with Sucrose Non-fermenting1-Related Protein Kinases2 and with Type 2A Protein Phosphatases That Function in Abscisic Acid Responses1[OPEN

    Science.gov (United States)

    Waadt, Rainer; Manalansan, Bianca; Rauniyar, Navin; Munemasa, Shintaro; Booker, Matthew A.; Brandt, Benjamin; Waadt, Christian; Nusinow, Dmitri A.; Kay, Steve A.; Kunz, Hans-Henning; Schumacher, Karin; DeLong, Alison; Yates, John R.; Schroeder, Julian I.

    2015-01-01

    The plant hormone abscisic acid (ABA) controls growth and development and regulates plant water status through an established signaling pathway. In the presence of ABA, pyrabactin resistance/regulatory component of ABA receptor proteins inhibit type 2C protein phosphatases (PP2Cs). This, in turn, enables the activation of Sucrose Nonfermenting1-Related Protein Kinases2 (SnRK2). Open Stomata1 (OST1)/SnRK2.6/SRK2E is a major SnRK2-type protein kinase responsible for mediating ABA responses. Arabidopsis (Arabidopsis thaliana) expressing an epitope-tagged OST1 in the recessive ost1-3 mutant background was used for the copurification and identification of OST1-interacting proteins after osmotic stress and ABA treatments. These analyses, which were confirmed using bimolecular fluorescence complementation and coimmunoprecipitation, unexpectedly revealed homo- and heteromerization of OST1 with SnRK2.2, SnRK2.3, OST1, and SnRK2.8. Furthermore, several OST1-complexed proteins were identified as type 2A protein phosphatase (PP2A) subunits and as proteins involved in lipid and galactolipid metabolism. More detailed analyses suggested an interaction network between ABA-activated SnRK2-type protein kinases and several PP2A-type protein phosphatase regulatory subunits. pp2a double mutants exhibited a reduced sensitivity to ABA during seed germination and stomatal closure and an enhanced ABA sensitivity in root growth regulation. These analyses add PP2A-type protein phosphatases as another class of protein phosphatases to the interaction network of SnRK2-type protein kinases. PMID:26175513

  7. Progesterone receptor membrane component-1 (PGRMC1) is the mediator of progesterone's antiapoptotic action in spontaneously immortalized granulosa cells as revealed by PGRMC1 small interfering ribonucleic acid treatment and functional analysis of PGRMC1 mutations.

    Science.gov (United States)

    Peluso, John J; Romak, Jonathan; Liu, Xiufang

    2008-02-01

    Progesterone (P4) receptor membrane component-1 (PGRMC1) and its binding partner, plasminogen activator inhibitor 1 RNA binding protein (PAIRBP1) are thought to form a complex that functions as membrane receptor for P4. The present investigations confirm PGRMC1's role in this membrane receptor complex by demonstrating that depleting PGMRC1 with PGRMC1 small interfering RNA results in a 60% decline in [(3)H]P4 binding and the loss of P4's antiapoptotic action. Studies conducted on partially purified GFP-PGRMC1 fusion protein indicate that [(3)H]P4 specifically binds to PGRMC1 at a single site with an apparent K(d) of about 35 nm. In addition, experiments using various deletion mutations reveal that the entire PGRMC1 molecule is required for maximal [(3)H]P4 binding and P4 responsiveness. Analysis of the binding data also suggests that the P4 binding site is within a segment of PGRMC1 that is composed of the transmembrane domain and the initial segment of the C terminus. Interestingly, PAIRBP1 appears to bind to the C terminus between amino acids 70-130, which is distal to the putative P4 binding site. Taken together, these data provide compelling evidence that PGRMC1 is the P4 binding protein that mediates P4's antiapoptotic action. Moreover, the deletion mutation studies indicate that each domain of PGRMC1 plays an essential role in modulating PGRMC1's capacity to both bind and respond to P4. Additional studies are required to more precisely delineate the role of each PGRMC1 domain in transducing P4's antiapoptotic action.

  8. Activation of the jasmonic acid pathway by depletion of the hydroperoxide lyase OsHPL3 reveals crosstalk between the HPL and AOS branches of the oxylipin pathway in rice.

    Directory of Open Access Journals (Sweden)

    Xiaoqiang Liu

    Full Text Available The allene oxide synthase (AOS and hydroperoxide lyase (HPL branches of the oxylipin pathway, which underlie the production of jasmonates and aldehydes, respectively, function in plant responses to a range of stresses. Regulatory crosstalk has been proposed to exist between these two signaling branches; however, there is no direct evidence of this. Here, we identified and characterized a jasmonic acid (JA overproduction mutant, cea62, by screening a rice T-DNA insertion mutant library for lineages that constitutively express the AOS gene. Map-based cloning was used to identify the underlying gene as hydroperoxide lyase OsHPL3. HPL3 expression and the enzyme activity of its product, (E-2-hexenal, were depleted in the cea62 mutant, which resulted in the dramatic overproduction of JA, the activation of JA signaling, and the emergence of the lesion mimic phenotype. A time-course analysis of lesion formation and of the induction of defense responsive genes in the cea62 mutant revealed that the activation of JA biosynthesis and signaling in cea62 was regulated in a developmental manner, as was OsHPL3 activity in the wild-type plant. Microarray analysis showed that the JA-governed defense response was greatly activated in cea62 and this plant exhibited enhanced resistance to the T1 strain of the bacterial blight pathogen Xanthomonasoryzaepvoryzae (Xoo. The wounding response was attenuated in cea62 plants during the early stages of development, but partially recovered when JA levels were elevated during the later stages. In contrast, the wounding response was not altered during the different developmental stages of wild-type plants. These findings suggest that these two branches of the oxylipin pathway exhibit crosstalk with regards to biosynthesis and signaling and cooperate with each other to function in diverse stress responses.

  9. Assessment of CD4+ T cell responses to glutamic acid decarboxylase 65 using DQ8 tetramers reveals a pathogenic role of GAD65 121-140 and GAD65 250-266 in T1D development.

    Directory of Open Access Journals (Sweden)

    I-Ting Chow

    Full Text Available Susceptibility to type 1 diabetes (T1D is strongly associated with MHC class II molecules, particularly HLA-DQ8 (DQ8: DQA1*03:01/DQB1*03:02. Monitoring T1D-specific T cell responses to DQ8-restricted epitopes may be key to understanding the immunopathology of the disease. In this study, we examined DQ8-restricted T cell responses to glutamic acid decarboxylase 65 (GAD65 using DQ8 tetramers. We demonstrated that GAD65 121-140 and GAD65 250-266 elicited responses from DQ8+ subjects. Circulating CD4+ T cells specific for these epitopes were detected significantly more often in T1D patients than in healthy individuals after in vitro expansion. T cell clones specific for GAD65 121-140 and GAD65 250-266 carried a Th1-dominant phenotype, with some of the GAD65 121-140-specific T cell clones producing IL-17. GAD65 250-266-specific CD4+ T cells could also be detected by direct ex vivo staining. Analysis of unmanipulated peripheral blood mononuclear cells (PBMCs revealed that GAD65 250-266-specific T cells could be found in both healthy and diabetic individuals but the frequencies of specific T cells were higher in subjects with type 1 diabetes. Taken together, our results suggest a proinflammatory role for T cells specific for DQ8-restricted GAD65 121-140 and GAD65 250-266 epitopes and implicate their possible contribution to the progression of T1D.

  10. Influence of harvest managements on biomass nutrient concentrations and removal rates of festulolium and tall fescue from a poorly drained nutrient-rich fen peatland

    DEFF Research Database (Denmark)

    Kandel, Tanka; Elsgaard, Lars; Lærke, Poul Erik

    2017-01-01

    This study was designed to show the effects of harvest time and frequency on biomass nutrient concentrations (total ash, N, P, K, Ca, Mg, Fe, Mn, Cu and Zn) as well as total nutrient removal potential by festulolium and tall fescue cultivated on a nutrient-rich fen peatland. The harvest managemen...

  11. Desarrollo de técnicas de extracción y análisis de antocianinas y compuestos fenólicos en Jaboticaba (Myrciaria Cauliflora)

    OpenAIRE

    Mera Morillo, Celia

    2015-01-01

    Desarrollo de técnicas de extracción mediante ultrasonidos y mediante fluidos presurizados para así, obtener las condiciones óptimas de extracción de las antocianinas mayoritarias y compuestos fenólicos totales presentes en la jaboticaba

  12. How a regional aquifer, a local aquifer and an oxbow lake impact on hydrological and biogeochemical processes in ariparian fen-meadow ecosystem

    DEFF Research Database (Denmark)

    Hoffmann, Carl Christian; Pedersen, Morten Lauge; Rasmussen, K. R.

    2009-01-01

    The groundwater flow pattern through a riparian fen-meadow was investigated by use of piezometer transects, soil survey, measurements of piezometric heads and measurements of hydraulic conductivity. Groundwater was sampled from piezometers and analysed for nitrate-N. Water balances and nitrate-N ...

  13. Para Além do Estado e do Mercado: A Dádiva no Fenômeno dos Sem-Abrigo

    Directory of Open Access Journals (Sweden)

    João Aldeia

    2014-03-01

    Full Text Available Las reflexiones sobre el fenómeno de los sin techo tienden a reproducir las ausencias que el paradigma del don identifica en el pensamiento sobre las sociedades modernas occidentales. Recurrentemente, se considera al Estado y al mercado como las únicas esferas de regulación social y se los interpreta como los espacios de donde derivan las causas estructurales y las posibles soluciones para el fenómeno. Ello no permite una comprensión completa del tema y tampoco una reflexión consistente sobre los modos de minimizar las injusticias de la vida en la calle. Pensar sobre el fenómeno por medio del paradigma del don es relevante porque permite identificar la habitual invisibilización de las relaciones interpersonales no oficiales que caracterizan la vida en la calle, posibilitando, a su vez, la revalorización de estas interacciones en el debate sobre el fenómeno de los sin techo.

  14. Phosphate Release Upon Long- and Short -Term Flooding of Fen Meadows Depends on Land Use History and Soil pH

    NARCIS (Netherlands)

    Beltman, B.; Van Der Ven, P. J. M.; Verhoeven, J. T. A.; Sarneel, J. M.

    2014-01-01

    Flooding of acidified and desiccated fen meadows is a management approach for mitigating loss of plant species as well as a short-term measure to prevent flooding in urban areas. Studies have shown that flooding events can cause extreme P release from soils. We questioned whether the occurrence of

  15. Phosphate release upon short- and long-term flooding of fen meadows depends on land use history and pH.

    NARCIS (Netherlands)

    Beltman, Boudewijn; van der Ven, P.J.M.; Verhoeven, Jos; Sarneel, J

    2014-01-01

    Flooding of acidified and desiccated fen meadows is a management approach for mitigating loss of plant species as well as a short-term measure to prevent flooding in urban areas. Studies have shown that flooding events can cause extreme P release from soils. We questioned whether the occurrence of

  16. The Fatty Acid Profile Analysis of Cyperus laxus Used for Phytoremediation of Soils from Aged Oil Spill-Impacted Sites Revealed That This Is a C18:3 Plant Species.

    Directory of Open Access Journals (Sweden)

    Noemí Araceli Rivera Casado

    Full Text Available The effect of recalcitrant hydrocarbons on the fatty acid profile from leaf, basal corm, and roots of Cyperus laxus plants cultivated in greenhouse phytoremediation systems of soils from aged oil spill-impacted sites containing from 16 to 340 g/Kg total hydrocarbons (THC was assessed to investigate if this is a C18:3 species and if the hydrocarbon removal during the phytoremediation process has a relationship with the fatty acid profile of this plant. The fatty acid profile was specific to each vegetative organ and was strongly affected by the hydrocarbons level in the impacted sites. Leaf extracts of plants from uncontaminated soil produced palmitic acid (C16, octadecanoic acid (C18:0, unsaturated oleic acids (C18:1-C18:3, and unsaturated eichosanoic (C20:2-C20:3 acids with a noticeable absence of the unsaturated hexadecatrienoic acid (C16:3; this finding demonstrates, for the first time, that C. laxus is a C18:3 plant. In plants from the phytoremediation systems, the total fatty acid contents in the leaf and the corm were negatively affected by the hydrocarbons presence; however, the effect was positive in root. Interestingly, under contaminated conditions, unusual fatty acids such as odd numbered carbons (C15, C17, C21, and C23 and uncommon unsaturated chains (C20:3n6 and C20:4 were produced together with a remarkable quantity of C22:2 and C24:0 chains in the corm and the leaf. These results demonstrate that weathered hydrocarbons may drastically affect the lipidic composition of C. laxus at the fatty acid level, suggesting that this species adjusts the cover lipid composition in its vegetative organs, mainly in roots, in response to the weathered hydrocarbon presence and uptake during the phytoremediation process.

  17. The Fatty Acid Profile Analysis of Cyperus laxus Used for Phytoremediation of Soils from Aged Oil Spill-Impacted Sites Revealed That This Is a C18:3 Plant Species

    Science.gov (United States)

    Montes Horcasitas, María del Carmen; Rodríguez Vázquez, Refugio; Esparza García, Fernando José; Pérez Vargas, Josefina; Ariza Castolo, Armando; Ferrera-Cerrato, Ronald; Gómez Guzmán, Octavio

    2015-01-01

    The effect of recalcitrant hydrocarbons on the fatty acid profile from leaf, basal corm, and roots of Cyperus laxus plants cultivated in greenhouse phytoremediation systems of soils from aged oil spill-impacted sites containing from 16 to 340 g/Kg total hydrocarbons (THC) was assessed to investigate if this is a C18:3 species and if the hydrocarbon removal during the phytoremediation process has a relationship with the fatty acid profile of this plant. The fatty acid profile was specific to each vegetative organ and was strongly affected by the hydrocarbons level in the impacted sites. Leaf extracts of plants from uncontaminated soil produced palmitic acid (C16), octadecanoic acid (C18:0), unsaturated oleic acids (C18:1-C18:3), and unsaturated eichosanoic (C20:2-C20:3) acids with a noticeable absence of the unsaturated hexadecatrienoic acid (C16:3); this finding demonstrates, for the first time, that C. laxus is a C18:3 plant. In plants from the phytoremediation systems, the total fatty acid contents in the leaf and the corm were negatively affected by the hydrocarbons presence; however, the effect was positive in root. Interestingly, under contaminated conditions, unusual fatty acids such as odd numbered carbons (C15, C17, C21, and C23) and uncommon unsaturated chains (C20:3n6 and C20:4) were produced together with a remarkable quantity of C22:2 and C24:0 chains in the corm and the leaf. These results demonstrate that weathered hydrocarbons may drastically affect the lipidic composition of C. laxus at the fatty acid level, suggesting that this species adjusts the cover lipid composition in its vegetative organs, mainly in roots, in response to the weathered hydrocarbon presence and uptake during the phytoremediation process. PMID:26473488

  18. The Fatty Acid Profile Analysis of Cyperus laxus Used for Phytoremediation of Soils from Aged Oil Spill-Impacted Sites Revealed That This Is a C18:3 Plant Species.

    Science.gov (United States)

    Rivera Casado, Noemí Araceli; Montes Horcasitas, María del Carmen; Rodríguez Vázquez, Refugio; Esparza García, Fernando José; Pérez Vargas, Josefina; Ariza Castolo, Armando; Ferrera-Cerrato, Ronald; Gómez Guzmán, Octavio; Calva Calva, Graciano

    2015-01-01

    The effect of recalcitrant hydrocarbons on the fatty acid profile from leaf, basal corm, and roots of Cyperus laxus plants cultivated in greenhouse phytoremediation systems of soils from aged oil spill-impacted sites containing from 16 to 340 g/Kg total hydrocarbons (THC) was assessed to investigate if this is a C18:3 species and if the hydrocarbon removal during the phytoremediation process has a relationship with the fatty acid profile of this plant. The fatty acid profile was specific to each vegetative organ and was strongly affected by the hydrocarbons level in the impacted sites. Leaf extracts of plants from uncontaminated soil produced palmitic acid (C16), octadecanoic acid (C18:0), unsaturated oleic acids (C18:1-C18:3), and unsaturated eichosanoic (C20:2-C20:3) acids with a noticeable absence of the unsaturated hexadecatrienoic acid (C16:3); this finding demonstrates, for the first time, that C. laxus is a C18:3 plant. In plants from the phytoremediation systems, the total fatty acid contents in the leaf and the corm were negatively affected by the hydrocarbons presence; however, the effect was positive in root. Interestingly, under contaminated conditions, unusual fatty acids such as odd numbered carbons (C15, C17, C21, and C23) and uncommon unsaturated chains (C20:3n6 and C20:4) were produced together with a remarkable quantity of C22:2 and C24:0 chains in the corm and the leaf. These results demonstrate that weathered hydrocarbons may drastically affect the lipidic composition of C. laxus at the fatty acid level, suggesting that this species adjusts the cover lipid composition in its vegetative organs, mainly in roots, in response to the weathered hydrocarbon presence and uptake during the phytoremediation process.

  19. Produção de mudas de cultivares de alface utilizando duas espumas fenólicas em Altamira, Pará

    Directory of Open Access Journals (Sweden)

    Alzirio Lino Couto

    2015-06-01

    Full Text Available O sucesso de qualquer produção comercial de hortaliças inicia-se com a produção de mudas. A espuma fenólica tem se mostrado um interessante e prático substrato para este processo. A utilização deste produto depende de uma lavagem precedente para reduzir a acidez. Porém, já é possível encontrar à venda espumas fenólicas com pH próximo. Por isso o objetivo deste trabalho foi avaliar a produção de mudas de cultivares de alface utilizando duas espumas fenólicas em Altamira, Pará. O delineamento constou de um esquema fatorial 2 (substratos x 6 (cultivares. Os dois substratos foram as espumas fenólicas Green Up®, com pH 6.0 (± 0.5., e a outra com pH 2.6 (± 0.5. As cultivares avaliadas foram: Alcione, Amanda, Lucy Brown, Caipira, Multiblond 3 e Solaris. Foi avaliada porcentagem de germinação, índice de velocidade de emergência, altura da planta e número de folhas. Houve diferença significativa para altura da planta em função dos substratos testados. A porcentagem de germinação mais elevada foi obtida com a espuma fenólica sem tratamento. A cultivar Caipira foi a que teve o menor desempenho na germinação. Para todas as variáveis analisadas, a cultivar Lucy Brown apresentou os melhores resultados em ambos os substratos.

  20. Avaliação da influência de substâncias fenólicas e carotenoides na anomalia do epicarpo da goiaba, "anelamento"

    Directory of Open Access Journals (Sweden)

    Taiji Watanabe

    2011-03-01

    Full Text Available A anomalia do epicarpo da goiaba, comumente relatada por agricultores e técnicos como o "anelamento juvenil da goiaba", tem causado preocupação devido à desinformação sobre o assunto. O objetivo deste estudo foi analisar quimicamente as concentrações de substâncias fenólicas e carotenoides na região do epicarpo de goiabas afetadas pelo "anelamento", visando a caracterizar essa anomalia previamente relatada. Foram analisadas substâncias fenólicas (taninos, flavonas/flavonóis, antocianinas e fenóis totais e carotenoides em epicarpos de frutos verdes e maduros de goiabeiras cv. Paluma, com e sem anomalia. O delineamento experimental adotado foi o inteiramente casualizado, sendo estabelecidos seis tratamentos com o epicarpo dos frutos maduro sem anomalia na região inferior (FMSI; frutos maduros sem injuria na região superior (FMSS; frutos verdes sem anomalia na região inferior (FVSI; frutos verdes sem anomalia na região superior (FVSS; frutos verdes com anomalia na região inferior (FVCI; frutos verdes com anomalia na região superior (FVCS. Dentre as substâncias analisadas, os carotenoides, os taninos e os fenóis totais mostram indicativos para a caracterização do anelamento. Tanto substâncias fenólicas quanto carotenoides apresentam propriedades antioxidantes e, dessa forma, poderiam estar relacionadas à defesa antioxidante causada por um fator de estresse ainda desconhecido, que promove o "anelamento" característico apresentado pelas goiabas.

  1. Composição fenólica de ligninas dioxano determinadas pela reação oxidativa com o nitrobenzeno

    Directory of Open Access Journals (Sweden)

    Fukushima Romualdo Shigueo

    2003-01-01

    Full Text Available A correta quantificação da concentração de lignina em plantas forrageiras, pelo método espectrofotométrico, pressupõe a existência de um padrão de referência. Um padrão de referência deve ter composição fenólica semelhante à da lignina da parede celular. O objetivo deste trabalho foi verificar se ligninas extraídas com solução ácida de dioxano para serem utilizadas como padrão de referência, apresentariam variação na composição fenólica da mesma maneira que a lignina da parede celular. Amostras de parede celular de "bromegrass", milho e trevo-vermelho foram submetidas ao método para extração de ligninas com solução ácida de dioxano. A composição fenólica das ligninas foi analisada mediante oxidação alcalina pelo nitrobenzeno com posterior separação dos componentes monoméricos via HPLC. As ligninas extraídas confirmaram a existência de variação na composição fenólica da mesma maneira às ligninas intactas presentes na parede celular e de substancial presença de ácidos cinâmicos nas ligninas de gramíneas. No que diz respeito à composição fenólica, ligninas extraídas com solução ácida de dioxano podem ser consideradas potenciais padrões de referência paras as análises espectrofotométricas.

  2. Environmental and Physiographic Controls on Inter-Growing Season Variability of Carbon Dioxide and Water Vapour Fluxes in a Minerotrophic Fen

    Science.gov (United States)

    van der Kamp, G.; Sonnentag, O.; Chen, J. M.; Barr, A.; Hedstrom, N.; Granger, R.

    2008-12-01

    The interaction of fens with groundwater is spatially and temporally highly variable in response to meteorological conditions, resulting in frequent changes of groundwater fluxes in both vertical and lateral directions (flow reversals) across the mineral soil-peat boundary. However, despite the importance of the topographic and hydrogeological setting of fens, no study has been reported in the literature that explores a fen's atmospheric CO2 and energy flux densities under contrasting meteorological conditions in response to its physiographic setting. In our contribution we report four years of growing season eddy covariance and supporting measurements from the Canada Fluxnet-BERMS fen (formerly BOREAS southern peatland) in Saskatchewan, Canada. We first analyze hydrological data along two piezometer transects across the mineral soil-peat boundary with the objective of assessing changes in water table configuration and thus hydraulic gradients, indicating flow reversals, in response to dry and wet meteorological conditions. Next we quantify and compare growing season totals and diurnal and daily variations in evapotranspiration (ET) and net ecosystem exchange (NEE) and its component fluxes gross ecosystem productivity (GPP) and terrestrial ecosystem respiration (TER) to identify their controls with a major focus on water table depth. While ET growing season totals were similar (~ 310 mm) under dry and wet meteorological conditions, the CO2 sink- source strength of Sandhill fen varied substantially from carbon neutral (NEE = -2 [+-7] g C m-2 per growing season) under dry meteorological condition (2003) to a moderate CO2- sink with NEE ranging between 157 [+- 10] and 190 [+- 11] g C m-2 per growing season under wet meteorological conditions (2004, 2005, and 2006). Using a process-oriented ecosystem model, BEPS-TerrainLab, we investigate how different canopy components at Sandhill contribute to total ET and GPP, and thus water use efficiency, under dry and wet

  3. Water-containing derivative phases of the Srn+1FenO3n+1 series

    International Nuclear Information System (INIS)

    Lehtimaeki, M.; Hirasa, A.; Matvejeff, M.; Yamauchi, H.; Karppinen, M.

    2007-01-01

    The n=1, 2, 3 and ∞ members of the homologous series Sr n+1 Fe n O 3n+1 of layered iron oxides are investigated for their tendency to accept additional layers of water in their crystals. The phases possess a Ruddlesden-Popper-type SrO-(SrO-FeO 2 ) n crystal structure, where the n=∞ limit is nothing but the perovskite structure. It is revealed that the n=1, 2 and 3 phases readily accommodate one or two layers of water between adjacent SrO layers, whereas the n=∞ member which lacks the SrO-SrO double-layer unit remains intact in the presence of water. The speed of the water intercalation process is found to decrease with increasing n. Among the layered water derivatives, the n=2 phase with two water molecules per formula unit, i.e. Sr 3 Fe 2 O 7 .2H 2 O, was found to be most stable. - Graphical abstract: Water-containing derivative phases obtained from the homologous series of Sr n+1 Fe n O 3n+1 Ruddlesden-Popper phases through topotactic water intercalation

  4. La dictadura militar en Grecia (1967- 1974. ¿Cómo enfocar el fenómeno autoritario?

    Directory of Open Access Journals (Sweden)

    Georges D. CONTOGEORGIS

    2010-02-01

    Full Text Available RESUMEN: La Dictadura de los Coroneles es abordada como un fenómeno inherente al déficit democrático, no tanto de la sociedad griega, sino del sistema internacional. El hecho de que la Dictadura Griega se atribuya a valores geoestratégicos y al déficit democrático (p.e. la prohibición del acceso al poder de los partidos políticos no liberales de los líderes de la Guerra Fría está también en sintonía con la diferencia fundamental que lo distingue de las dictaduras de la Península Ibérica. Estas últimas están relacionadas con un mismo fenómeno anterior de la Europa anterior a la Segunda Guerra Mundial y como tales están clasificadas como una parte del proceso de transición que tuvo lugar en el Viejo Continente. Por el contrario, el fenómeno autoritario en el sistema político griego constituye un paréntesis porque la sociedad griega no experimentó la transición del feudalismo a la modernidad y su sistema político fue desde el comienzo (desde 1821 el primero entre los estados-nación con una base representativa asentada sobre el sufragio universal. Todo ello demuestra que las distinciones entre Norte y Sur, relativas a la democracia, están ideológicamente condicionadas y no derivan de conclusiones extraídas del desarrollo político de las sociedades. Palabras clave: Totalitarismo, Dictadura, Déficit democrático, Estado representativo, Guerra Fría, Protesta, Consenso político. ABSTRACT: The Dictatorship of the Colonels is approached as a phenomenon, which is inherent in the democratic deficit, not of Greek society, but of the international system. The fact that the Greek Dictatorship is attributed to geostrategic reasons and to the democratic deficit (e.g. the prohibition of access to power of non-liberal political parties of the leaders of the Cold War is also in line with the fundamental difference, which distinguishes it from dictatorships of the Iberian Peninsula. The latter are related to the same phenomena of

  5. Binning of shallowly sampled metagenomic sequence fragments reveals that low abundance bacteria play important roles in sulfur cycling and degradation of complex organic polymers in an acid mine drainage community

    Science.gov (United States)

    Dick, G. J.; Andersson, A.; Banfield, J. F.

    2007-12-01

    Our understanding of environmental microbiology has been greatly enhanced by community genome sequencing of DNA recovered directly the environment. Community genomics provides insights into the diversity, community structure, metabolic function, and evolution of natural populations of uncultivated microbes, thereby revealing dynamics of how microorganisms interact with each other and their environment. Recent studies have demonstrated the potential for reconstructing near-complete genomes from natural environments while highlighting the challenges of analyzing community genomic sequence, especially from diverse environments. A major challenge of shotgun community genome sequencing is identification of DNA fragments from minor community members for which only low coverage of genomic sequence is present. We analyzed community genome sequence retrieved from biofilms in an acid mine drainage (AMD) system in the Richmond Mine at Iron Mountain, CA, with an emphasis on identification and assembly of DNA fragments from low-abundance community members. The Richmond mine hosts an extensive, relatively low diversity subterranean chemolithoautotrophic community that is sustained entirely by oxidative dissolution of pyrite. The activity of these microorganisms greatly accelerates the generation of AMD. Previous and ongoing work in our laboratory has focused on reconstrucing genomes of dominant community members, including several bacteria and archaea. We binned contigs from several samples (including one new sample and two that had been previously analyzed) by tetranucleotide frequency with clustering by Self-Organizing Maps (SOM). The binning, evaluated by comparison with information from the manually curated assembly of the dominant organisms, was found to be very effective: fragments were correctly assigned with 95% accuracy. Improperly assigned fragments often contained sequences that are either evolutionarily constrained (e.g. 16S rRNA genes) or mobile elements that are

  6. Quantitative Non-canonical Amino Acid Tagging (QuaNCAT) Proteomics Identifies Distinct Patterns of Protein Synthesis Rapidly Induced by Hypertrophic Agents in Cardiomyocytes, Revealing New Aspects of Metabolic Remodeling*

    Science.gov (United States)

    Liu, Rui; Kenney, Justin W.; Manousopoulou, Antigoni; Johnston, Harvey E.; Kamei, Makoto; Woelk, Christopher H.; Xie, Jianling; Schwarzer, Michael; Proud, Christopher G.

    2016-01-01

    Cardiomyocytes undergo growth and remodeling in response to specific pathological or physiological conditions. In the former, myocardial growth is a risk factor for cardiac failure and faster protein synthesis is a major factor driving cardiomyocyte growth. Our goal was to quantify the rapid effects of different pro-hypertrophic stimuli on the synthesis of specific proteins in ARVC and to determine whether such effects are caused by alterations on mRNA abundance or the translation of specific mRNAs. Cardiomyocytes have very low rates of protein synthesis, posing a challenging problem in terms of studying changes in the synthesis of specific proteins, which also applies to other nondividing primary cells. To study the rates of accumulation of specific proteins in these cells, we developed an optimized version of the Quantitative Noncanonical Amino acid Tagging LC/MS proteomic method to label and selectively enrich newly synthesized proteins in these primary cells while eliminating the suppressive effects of pre-existing and highly abundant nonisotope-tagged polypeptides. Our data revealed that a classical pathologic (phenylephrine; PE) and the recently identified insulin stimulus that also contributes to the development of pathological cardiac hypertrophy (insulin), both increased the synthesis of proteins involved in, e.g. glycolysis, the Krebs cycle and beta-oxidation, and sarcomeric components. However, insulin increased synthesis of many metabolic enzymes to a greater extent than PE. Using a novel validation method, we confirmed that synthesis of selected candidates is indeed up-regulated by PE and insulin. Synthesis of all proteins studied was up-regulated by signaling through mammalian target of rapamycin complex 1 without changes in their mRNA levels, showing the key importance of translational control in the rapid effects of hypertrophic stimuli. Expression of PKM2 was up-regulated in rat hearts following TAC. This isoform possesses specific regulatory

  7. Avaliação da atividade antioxidante dos compostos fenólicos naturalmente presentes em subprodutos do pseudofruto de caju (Anacardium occidentale L. Evaluation of the Antioxidant Activity of Phenolic Compounds Naturally Contained in By-products of the Cashew Apple (Anacardium occidentale L.

    Directory of Open Access Journals (Sweden)

    Priscila Regina Bolelli Broinizi

    2007-12-01

    Full Text Available O presente trabalho teve como proposta avaliar a capacidade antioxidante do bagaço e do extrato bruto concentrado (EBC do pedúnculo de caju, tendo em vista o seu aproveitamento. O potencial antioxidante dos extratos aquoso (EAq e alcoólico (EAlc e das frações de ácidos fenólicos livres (AFL e esterificadas (solúvel AFS e insolúvel AFI desses subprodutos do pedúnculo de caju clone CCP-76 foi avaliado em sistema beta-caroteno/ácido linoléico, pelo teste de varredura de radical livre [2,2 difenil-1-pricril-hidrazil (DPPH•] e de Rancimat. Além do mais, o conteúdo de fenólicos totais e o perfil de ácidos fenólicos foram determinados usando-se o reagente de Folin-Ciocateau e por cromatografia gasosa, respectivamente. O EAq e a fração AFL dos subprodutos apresentaram o maior conteúdo de fenólicos. As frações de ácidos fenólicos exibiram expressiva atividade antioxidante, superior aos extratos estudados nos sistemas beta-caroteno e DPPH. Entretanto no teste Rancimat, os extratos apresentaram maior proteção à oxidação em relação às frações e ao BHT. Nas frações foram identificados os ácidos gálico, ferúlico, caféico, protocatecuico, quínico, cinâmico, gentíssico, p-cumárico e salicílico, os quais lhes conferem o potencial antioxidante. Estes resultados caracterizaram in vitro o potencial antioxidante do bagaço e do EBC do pedúnculo de caju clone CCP-76.This study aimed to determine the antioxidant capacity of cashew apple pulp and raw concentrated extract. The antioxidant potential of aqueous (EAq and alcoholic (EAlc extracts and of free phenolic acids (FPA and esterified (soluble - SPA and insoluble - IPA fractions of the by-products of the cashew apple clone CCP-76 were evaluated in a beta-carotene-linoleate system by the free radical [2,2-diphenyl-1-picrylhydrazyl (DPPH•] scavenging assay and the Rancimat test. In addition, the total phenolic content and phenolic acid profile were determined using

  8. The climate warming effect of a fen peat meadow with fluctuating water table is reduced by young alder trees

    Directory of Open Access Journals (Sweden)

    V. Huth

    2018-03-01

    Full Text Available Black alder (Alnus glutinosa (L. Gaertn. occurs naturally in temperate marshes and in minerotrophic peatlands and is also suitable for paludiculture - the cultivation of biomass on wet or rewetted peatland. We investigated the effect of a newly established black alder plantation on the greenhouse gas (GHG balance of a degraded fen in north-eastern Germany over a two-year period (August 2010–August 2012. We compared the alder plantation (Awet with an extensively used meadow (Mwet and a drier reference meadow (Mmoist. GHG fluxes were measured monthly to bi-monthly using the closed chamber method. Our results show that Awet was a slight net GHG (in CO2-eq sink of 3.4 ± 1.7 t ha-1 yr-1, Mwet was a moderate net GHG source of 9.6 ± 1.2 t ha 1 yr-1, and Mmoist was a strong net GHG source of 24.5 ± 1.6 t ha-1 yr-1. This was mainly driven by CO2 uptake at the two very moist (wet sites and by high CO2 release at the drier reference site. Awet was a larger CO2 sink than Mwet, probably due to additional CO2 uptake by the alder stand at Awet and carbon export in plant material harvested from Mwet. All sites were significant CH4 sources. Substantial CH4 emission peaks were observed at all sites following extraordinarily heavy precipitation during the summer of 2011, which accounted for up to 70 % of the accumulated two-year CH4 emissions. However, the Awet site generally emitted less CH4, possibly due to the effective oxygen transport mechanism in black alders. N2O emissions were negligible at all three sites. Our results indicate that the GHG balances of formerly drained fens benefit in the short term from planting of black alders, mostly due to reduced CH4 emissions. This study highlights the importance of acknowledging extreme precipitation events and groundwater fluctuations for the derivation of reliable GHG emission factors.

  9. Acoso sexual: Elementos de discusión para la redefinición del fenómeno

    Directory of Open Access Journals (Sweden)

    Víctor Manuel Aguilar Pereira

    2007-02-01

    Full Text Available LA PROBLEMÁTICA DEL ACOSO SEXUAL SE HA CONFINADO, GENERALMENTE, al ámbito laboral, y se ha considerado como un efecto de relaciones jerárquicas. Esta concepción ha limitado su estudio en cierta medida, y ha permitido que se ignoren otras manifestaciones, mucho más sutiles, pero que, con una mirada más minuciosa y crítica, dejan entrever los cimientos socio-históricos de este fenómeno: la arraigada ideología de género, traducida en violencia de género, que mancilla diariamente los derechos fundamentales de la mujer. Si bien falta un largo camino por recorrer para reformular una definición integral de acoso sexual, los factores aquí presentados se han considerado elementos primordiales para esta reformulación, puesto que permitirán un conocimiento más amplio de las raíces que sustentan al acoso sexual, lo que a su vez encaminará propuestas de acción efectivas para que, tanto hombres como mujeres, puedan hacerle frente.

  10. Suicidio en Bogotá: un fenómeno que aumenta en poblaciones jóvenes.

    Directory of Open Access Journals (Sweden)

    Ricardo Sánchez

    2002-12-01

    Full Text Available Para analizar los patrones bimodales de la edad en víctimas de suicidio de Bogotá en tres puntos de corte, 1990, 1995 y 2000, se llevó a cabo un estudio observacional analítico con base en los expedientes del Instituto Nacional de Medicina Legal analizados mediante aplicación de modelos estadísticos de distribuciones de mezcla finita. Se analizaron 222 suicidios en 1990, 272 en 1995 y 330 en el 2000. Se comprobó la presencia de un patrón bimodal en cada uno de los años analizados. Las medias de cada uno de los componentes responsables de las dos modas se hicieron progresivamente menores con el transcurso del tiempo. En Bogotá se dio una distribución bimodal en la edad de los suicidas a lo largo del período analizado. La tendencia de las medias sugiere que, con el transcurso del tiempo, los suicidios en Bogotá tienden a ocurrir en personas más jóvenes. Este fenómeno debe ser objeto de investigación adicional y de aplicación de estrategias específicas en salud mental dirigidas a estos grupos en riesgo.

  11. Acciones gubernamentales frente a los desastres provocados por fenómenos hidrometeorológicos en México

    Directory of Open Access Journals (Sweden)

    Gabriel Angelotti Pasteur

    2015-02-01

    Full Text Available Las acciones realizadas tras los desastres constituyen una oportunidad para el cambio social, en específico, para construir sociedades resilientes. Sin embargo, cuando en los procesos de reconstrucción se persiguen intereses exógenos (económicos, sociales o políticos y, preferentemente, ajenos a las necesidades de la sociedad afectada, se incrementan las condiciones de riesgo y la vulnerabilidad ante futuras amenazas. En el presente trabajo se analiza lo ocurrido en Yucatán (México cuando, tras el paso del huracán Isidoro (2002, se implementó un programa de reconstrucción con el fin de suplir aquellas viviendas que habían sido dañadas y destruidas por ese fenómeno hidrometeorológico. Mediante el mismo se esperaba dotar a las familias damnificadas de una vivienda digna, resistente, moderna y, de este modo, contribuir a forjar una sociedad más segura. Sin embargo, los resultados alcanzados ponen en duda esta meta del gobierno.

  12. Estudio exploratorio sobre el fenómeno del “Bullying” en la ciudad de Cali, Colombia

    Directory of Open Access Journals (Sweden)

    María Teresa Paredes

    2008-05-01

    Full Text Available Este es el primer estudio sobre el fenómeno del hostigamiento entre pares o “bullying” que se realiza en la ciudad de Cali, Colombia. Se efectuaron 2.542 encuestas a estudiantes de sexto, séptimo y octavo grados de catorce colegios de la ciudad, con el fin de identificar la presencia del problema y –en caso de existir– de establecer las formas específicas de manifestación, teniendo en cuenta edad, género y estrato socioeconómico.Los resultados demostraron la presencia de “bullying” en el 24.7% de los encuestados y encuestadas, expresado en comportamientos de intimidación o agresión verbal, física y psicológica en estudiantes de ambos géneros de todos los estratos socioeconómicos. Se estableció que la forma de agresión de mayor frecuencia es la verbal y que ésta sucede también en presencia de otros compañeros, compañeras, profesoras y profesores en el aula de clase.

  13. El fenómeno migratorio en Galicia: del obrero emigrante al ciudadano acogedor… ¿lecciones aprendidas?

    Directory of Open Access Journals (Sweden)

    Xosé Manuel Malheiro Gutiérrez

    2013-02-01

    Full Text Available La emigración a América ha sido un fenómeno de gran repercusión en la historia reciente de Galicia. Parte de nuestro presente se desarrolla alrededor de este hecho, incidiendo en la economía, demografía, sociedad, cultura o educación… Galicia, tradicional exportadora de mano de obra (inicialmente a América; más tarde a Europa sigue enviando mano de obra joven y preparada hacia otras regiones. Sin embargo, en algunas zonas de Galicia, el incremento de la inmigración a la que hay que añadir la que conforman los retornados, empieza a tener presencia en la sociedad.El presente trabajo analiza los patrones socioculturales que tienden a repetirse entre la partida de nuestros abuelos a América y la llegada de trabajadores inmigrantes que ahora acogemos provenientes de Centroeuropa, Magreb, África subsahariana o Latinoamérica; elabora una serie de conclusiones…, y plantea un interrogante: ¿Hemos aprendido, antaño como inmigrantes, alguna lección que nos ayude a entender y aceptar a los que ahora recibimos?

  14. Migraciones Visuales: análisis del fenómeno migratorio a través del videoarte

    Directory of Open Access Journals (Sweden)

    Célia Riboulet

    Full Text Available Este ensayo explora los modos en los que la migración se desplaza (en el espacio y en el tiempo a través de las problemáticas relativas a la habitación (la casa, lengua, memoria, identidad y arquitectura. También analiza las diferentes modificaciones que generan los desplazamientos en diferentes tiempos y territorios. Porque "el arte contemporáneo se encuentra en la frontera que separa la información de la ficción, frontera entre el documental y la puesta en abismo de nuestra sociedad" (Renard, 2007, p.17 y está elegido (y más específicamente el videoarte como soporte posible para el análisis del tema estudiado: migraciones. Las nociones de fronteras, territorios, exilios, cuestionamientos identitarios y espaciales están en medio de los procesos artísticos de varios artistas "migrantes" o "no migrantes". Algunos rechazan la definición de artista migrante, no obstante sus historias personales nutren sus creaciones; otros "no migrantes" han tratado el tema como un fenómeno de relevante importancia política, social, histórica, etc.

  15. Guided Image Filtering-Based Pan-Sharpening Method: A Case Study of GaoFen-2 Imagery

    Directory of Open Access Journals (Sweden)

    Yalan Zheng

    2017-12-01

    Full Text Available GaoFen-2 (GF-2 is a civilian optical satellite self-developed by China equipped with both multispectral and panchromatic sensors, and is the first satellite in China with a resolution below 1 m. Because the pan-sharpening methods on GF-2 imagery have not been a focus of previous works, we propose a novel pan-sharpening method based on guided image filtering and compare the performance to state-of-the-art methods on GF-2 images. Guided image filtering was introduced to decompose and transfer the details and structures from the original panchromatic and multispectral bands. Thereafter, an adaptive model that considers the local spectral relationship was designed to properly inject spatial information back into the original spectral bands. Four pairs of GF-2 images acquired from urban, water body, cropland, and forest areas were selected for the experiments. Both quantitative and visual inspections were used for the assessment. The experimental results demonstrated that for GF-2 imagery acquired over different scenes, the proposed approach consistently achieves high spectral fidelity and enhances spatial details, thereby benefitting the potential classification procedures.

  16. Measurement and modelling of CO2 flux from a drained fen peatland cultivated with reed canary grass and spring barley

    DEFF Research Database (Denmark)

    Kandel, Tanka Prasad; Elsgaard, Lars; Lærke, Poul Erik

    2013-01-01

    Cultivation of bioenergy crops has been suggested as a promising option for reduction of greenhouse gas (GHG) emissions from arable organic soils (Histosols). Here, we report the annual net ecosystem exchange (NEE) fluxes of CO2 as measured with a dynamic closed chamber method at a drained fen......-C m−2 in RCG and SB plots, respectively, with Rfb accounting for 32 and 22% respectively. Total estimated annual GP was −1818 ± 42 and −1329 ± 66 g CO2-C m−2 in RCG and SB plots leading to a NEE of 69 ± 36 g CO2-C m−2 yr−1 in RCG plots (i.e., a weak net source) and −41 ± 47 g CO2-C m−2 yr−1 in SB...

  17. Annual balances of CH4 and N2O from a managed fen meadow using eddy covariance flux measurements

    International Nuclear Information System (INIS)

    Schrier-Uijl, A.P.; Veenendaal, E.M.; Kroon, P.S.; Hensen, A.; Jonker, H.J.J.

    2010-10-01

    Annual terrestrial balances of methane (CH4) and nitrous oxide (N2O) are presented for a managed fen meadow in the Netherlands for 2006, 2007 and 2008, using eddy covariance (EC) flux measurements. Annual emissions derived from different methods are compared. The most accurate annual CH4 flux is achieved by gap filling EC fluxes with an empirical multivariate regression model, with soil temperature and mean wind velocity as driving variables. This model explains about 60% of the variability in observed daily CH4 fluxes. Annual N2O emissions can be separated into background emissions and event emissions due to fertilization. The background emission is estimated using a multivariate regression model also based on EC flux data, with soil temperature and mean wind velocity as driving variables. The event emissions are estimated using emission factors. The minimum direct emission factor is derived for six fertilization events by subtracting the background emission, and the IPCC default emission factor of 1% is used for the other events. In addition, the maximum direct emission factors are determined for the six events without subtracting the background emission. The average direct emission factor ranges from 1.2 to 2.8%, which is larger than the IPCC default value. Finally, the total terrestrial greenhouse gas balance is estimated at 16 Mg ha -1 year -1 in CO2-equivalents with contributions of 30, 25 and 45% by CO2, CH4 and N2O, respectively.

  18. Fen (n=1–6) clusters chemisorbed on vacancy defects in graphene: Stability, spin-dipole moment, and magnetic anisotropy

    KAUST Repository

    Haldar, Soumyajyoti

    2014-05-09

    In this work, we have studied the chemical and magnetic interactions of Fen (n=1–6) clusters with vacancy defects (monovacancy to correlated vacancies with six missing C atoms) in a graphene sheet by ab initio density functional calculations combined with Hubbard U corrections for correlated Fe-d electrons. It is found that the vacancy formation energies are lowered in the presence of Fe, indicating an easier destruction of the graphene sheet. Due to strong chemical interactions between Fe clusters and vacancies, a complex distribution of magnetic moments appear on the distorted Fe clusters which results in reduced averaged magnetic moments compared to the free clusters. In addition to that, we have calculated spin-dipole moments and magnetic anisotropy energies. The calculated spin-dipole moments arising from anisotropic spin density distributions vary between positive and negative values, yielding increased or decreased effective moments. Depending on the cluster geometry, the easy axis of magnetization of the Fe clusters shows in-plane or out-of-plane behavior.

  19. La movilidad internacional por razones de estudio: Geografía de un fenómeno global

    Directory of Open Access Journals (Sweden)

    Rosa Emilia Bermúdez Rico

    2015-01-01

    Full Text Available El propósito central de este artículo es presentar un análisis de las recientes tendenciasy patrones que caracterizan la movilidad por razones de estudio a nivel terciario comofenómeno mundial, en el contexto general de la movilidad calificada actual. Bajo estemarco se discuten las perspectivas analíticas sobre la movilidad por razones de estudioy se identifican puntos centrales del debate actual en torno al carácter e implicacionesde este tipo de movilidad. El análisis presentado se fundamenta en las estadísticas so-bre movilidad internacional de estudiantes en educación terciaria, suministradas porel Instituto de Estadística de la Organización de Naciones Unidas para la Educacióny la Cultura (UNESCO. El análisis detallado de este flujo, tanto en los países de origencomo de recepción, muestra una geografía de este fenómeno global que se caracte-riza por su concentración hegemónica en los países del norte como receptores y elpredominio de los países asiáticos en la disputa por obtener una mayor cualificaciónprofesional con estándares internacionales en el contexto mundial.

  20. Antioxidant activity and phenolic content of agricultural by-products from wine production/ Atividade antioxidante e conteúdo fenólico do resíduo agroindustrial da produção de vinho

    Directory of Open Access Journals (Sweden)

    Eugênia Marta Kuskoski

    2008-08-01

    Full Text Available The present work aimed to investigate the antioxidant properties of byproducts derived from wine production. The varieties of PINOT GRIS and COUDERC 13 grapes, collected in Videira-SC, were analyzed as natural sources of polyphenols and other prophylactic agents (antioxidants for application in food and phytochemical industries. The biomass used for extracts was ground and dried in different temperatures (45oC, 60oC e 80oC, using acetone 80% as solvent. The phenolic compounds were quantitatively evaluated by the Folin-Ciocalteu method and the results expressed in mg/100g of Gallic acid. For the flavonoids analysis, it was applied DMACA (p- Dimethylaminocinnamaldehye method and the results were expressed in equivalent mg of catechin/100g sample. The antioxidant activity was evaluated by spectrophotometric method through the discoloration of ABTS•+ radical (2,2'-azino-bis[3- ethylbenzthiazoline-6-sulfonic acid] with potassium persulphate and by DPPH method, which is based on the reduction of DPPH• radical absorbance by antioxidant substances; the results were expressed in TEAC (antioxidant activity equivalent to Trolox and VCEAC (antioxidant activity equivalent to vitamin C. It was observed a better antioxidant activity on extracts obtained from PINOT GRIS grapes, in which the 45 oC dried extracts presented a higher number of phenolic compounds and flavonoids, as well as a better antioxidant activity in both varieties. These information become useful for phenolic compounds identifying and for a possible using of these extracts as a secure additive in food industry.Este trabalho propõe uma investigação do potencial antioxidante do resíduo no processamento de uvas das variedades COUDERC 13 e PINOT GRIS, ambas coletadas em Videira-SC, como fonte natural de polifenóis e outros agentes profiláticos (antioxidantes para aplicação nas indústrias alimentícia e de fitoterápicos. A biomassa utilizada para obtenção dos extratos foi triturada

  1. Atividade antimicrobiana de derivados fenólicos do líquen Ramalina sorediosa (B. de Lesd. Laundron Antimicrobian activity of phenols actives from the liquen Ramalina sorediosa (B. de Lesd. Laundron

    Directory of Open Access Journals (Sweden)

    Emerson P. da Silva Falcão

    2004-12-01

    Full Text Available A atividade antimicrobiana de extratos brutos de Ramalina sorediosa foi detectada pelo método de difusão em disco de papel. Dois metabólitos liquênicos de natureza fenólica foram identificados por meio de técnicas biocromatográficas. Uma dessas substâncias foi identificada por meio de cromatografia em camada delgada como sendo o ácido úsnico. A segunda substância, que se encontra presente em maior concentração em relação aos demais constituintes nos extratos, trata-se do ácido homossequicáico. As análises em cromatografia em camada delgada (CCD e cromatografia líquida de alta eficiência (CLAE revelaram ainda a presença do ácido salazínico. Os dados obtidos tornam possível atribuir a atividade antibiótica observada nesta espécie a uma provável associação sinérgica destas substâncias.The antimicrobian activity of crude extracts from Ramalina sorediosa was detected by the diffusion disc-paper method. Two phenolic compounds from the lichen considered active were detected by using biochromathograhyc technique. Two of those compounds were identified through thin layer chromatographic technique (TLC as been usnic acid and the second one, wich is present in higher concentration when compared with the other substances, was the homosekikaik acid. The TLC and high-pressure liquid chromatography (HPLC assays still detected the salazanic acid presence. The obtained data make it possible to attribute the antibiotic activity of this species to a synergic association of those two substances.

  2. Non-Targeted Metabolomics Analysis of Golden Retriever Muscular Dystrophy-Affected Muscles Reveals Alterations in Arginine and Proline Metabolism, and Elevations in Glutamic and Oleic Acid In Vivo

    Science.gov (United States)

    Abdullah, Muhammad; Kornegay, Joe N.; Honcoop, Aubree; Parry, Traci L.; Balog-Alvarez, Cynthia J.; Muehlbauer, Michael J.; Newgard, Christopher B.; Patterson, Cam

    2017-01-01

    Background: Like Duchenne muscular dystrophy (DMD), the Golden Retriever Muscular Dystrophy (GRMD) dog model of DMD is characterized by muscle necrosis, progressive paralysis, and pseudohypertrophy in specific skeletal muscles. This severe GRMD phenotype includes moderate atrophy of the biceps femoris (BF) as compared to unaffected normal dogs, while the long digital extensor (LDE), which functions to flex the tibiotarsal joint and serves as a digital extensor, undergoes the most pronounced atrophy. A recent microarray analysis of GRMD identified alterations in genes associated with lipid metabolism and energy production. Methods: We, therefore, undertook a non-targeted metabolomics analysis of the milder/earlier stage disease GRMD BF muscle versus the more severe/chronic LDE using GC-MS to identify underlying metabolic defects specific for affected GRMD skeletal muscle. Results: Untargeted metabolomics analysis of moderately-affected GRMD muscle (BF) identified eight significantly altered metabolites, including significantly decreased stearamide (0.23-fold of controls, p = 2.89 × 10−3), carnosine (0.40-fold of controls, p = 1.88 × 10−2), fumaric acid (0.40-fold of controls, p = 7.40 × 10−4), lactamide (0.33-fold of controls, p = 4.84 × 10−2), myoinositol-2-phosphate (0.45-fold of controls, p = 3.66 × 10−2), and significantly increased oleic acid (1.77-fold of controls, p = 9.27 × 10−2), glutamic acid (2.48-fold of controls, p = 2.63 × 10−2), and proline (1.73-fold of controls, p = 3.01 × 10−2). Pathway enrichment analysis identified significant enrichment for arginine/proline metabolism (p = 5.88 × 10−4, FDR 4.7 × 10−2), where alterations in L-glutamic acid, proline, and carnosine were found. Additionally, multiple Krebs cycle intermediates were significantly decreased (e.g., malic acid, fumaric acid, citric/isocitric acid, and succinic acid), suggesting that altered energy metabolism may be underlying the observed GRMD BF muscle

  3. El fenómeno del bullying: una comparación de dos protocolos de intervención en el País Vasco

    OpenAIRE

    Goirigolzarri-Sáez, Sandra

    2015-01-01

    Este trabajo tiene como objetivo abordar el fenómeno del bullying mediante la comparación de dos protocolos de actuación llevados a cabo en el País Vasco para intervenir en esta problemática. Para la consecución de este fin, se ha dividido el marco teórico en dos partes: en la primera, se abordan los aspectos más importantes dentro del fenómeno del bullying como son su definición y características, el perfil de los participantes, las consecuencias psicológicas, el rol de la fam...

  4. La definición jurídica del fenómeno metropolitano en el ámbito subnacional mexicano

    Directory of Open Access Journals (Sweden)

    Alberto Arellano Ríos

    2014-10-01

    Full Text Available En este texto se analiza la definición jurídica del fenómeno metropolitano en seis Estados de la república mexicana. Se estudian seis legislaciones estatales creadas expresamente para atender y darle forma jurídica a un problema que se ha acentuado con mayor fuerza en México, el cual desde el punto de vista de las instancias gubernamentales tiene mayor relevancia en los últimos veinte años. De este modo, el documento esboza el fenómeno metropolitano como contexto social. Luego traza los mecanismos constitucionales contemplados para gestionar y gobernar las zonas metropolitanos para, finalmente, exponer los casos estatales que ante la ausencia de un marco legal nacional, y desde la lógica del sistema federal, intentan sentar bases jurídicas para resolver este problema.

  5. FEN LABORATUARLARININ İŞLEVSELLİĞİNİN İLKÖĞRETİM OKULLARINDA DEĞERLENDİRİLMESİ

    OpenAIRE

    YILAYAZ, Ömer; TURAN, Mehmet; BAHŞİ, Muammer

    2009-01-01

    Bu araştırmada, ilköğretim okullarındaki fen laboratuarlarının işlevselliğine ilişkin öğrenci görüşlerinin belirlemesi amaçlanmıştır. Bu amaçla 19 maddelik bir anket formu hazırlanmıştır. Çalışma, Fırat Üniversitesi Eğitim Fakültesi Fen ve Teknoloji öğretmenliği bölümünde öğrenim gören 76 öğrenciye (4. sınıf) uygulanmıştır. Anket sonucunda elde edilen veriler, SPSS paket istatistik programında değerlendirilmiştir.

  6. Análisis de la influencia del fenómeno del ciberterrorismo en las dinámicas de seguridad de la Unión Europea

    OpenAIRE

    Torres Pedraza, Julián Alejandro

    2014-01-01

    El fenómeno del ciberterrorismo se constituye como una nueva amenaza a la seguridad internacional, este fenómeno es el resultado de distintos procesos en el sistema internacional como el de la globalización. La definición del concepto se establece por la convergencia entre el ciberespacio y el terrorismo. El objetivo de esta investigación es explicar las distintas dimensiones del ciberterrorismo, métodos de ataque, acciones pasadas, propósito del fenómeno, situación actual y vulnerabilidades....

  7. Pressões (sócio)linguísticas na determinação do acento enfático: análise de alguns fenômenos variáveis

    OpenAIRE

    Carlos Alexandre Gonçalves

    2017-01-01

    Analise do fenômeno da ênfase prosódica, tomando como base seu efeito em fenômenos de variação/mudança linguística. Descrição da ênfase como grupo de fator relevante em pesquisas labovianas sobre processo de assimilação -ndo/-no. os fenômenos de aférese e prótese em processos de intensificação da língua.

  8. Relación entre el fenómeno de la ilusión de la mano falsa y variables personales

    Directory of Open Access Journals (Sweden)

    Gina Rodríguez-Melgarejo

    2015-07-01

    Full Text Available El fenómeno de la ilusión de la mano falsa (IMF se ha propuesto como un diseño que permite discriminar procesos perceptuales a partir de entradas sensoriales multimodales. Se han reportado varias modificaciones y variables que podrían afectar la generación del fenómeno. Este estudio se planteó bajo un diseño descriptivo-correlacional del fenómeno. Se realizó el procedimiento en jóvenes (16-48 años M = 20.86 años, DE = 4.4 colombianos para replicar el fenómeno de IMF. Los sujetos se dividieron al azar en dos grupos que diferían en el tipo de estimulación (sincrónica y desincronizada. La identificación de la IMF se realizó mediante la escala reportada en múltiples estudios, mostrando que en algunas variables como la estimulación se presentaba una diferencia en el reporte de IMF (P2. χ2 = 5.856: p < 0.05; P3. χ2 = 6.655: p < 0.01 y P7 (χ2 = 4.764: p < 0.05. Otras variables como sexo y dominancia manual mostraron algunas diferencias. La escala presenta una consistencia interna aceptable (α = 0.8. Los resultados de la IMF son similares a algunos estudios pero con puntuaciones menores que en los estudios iniciales, la diferencia en cuanto al género en tareas perceptuales podría explicar gran parte de los resultados.

  9. El Frente Estudiantil Nacional (FEN: juventud y estudiantado en el proceso contestatario de los años sesenta en Argentina

    Directory of Open Access Journals (Sweden)

    Alejandra Reta

    2009-12-01

    Full Text Available Este artículo forma parte de un proyecto más amplio que aborda el proceso de acercamiento al Peronismo por parte de un sector del movimiento estudiantil en Argentina durante los años sesentas, tomando el caso particular del Frente Estudiantil Nacional (FEN. El FEN fue una organización universitaria “de pasaje al peronismo”, que buscaba inserción “legítima” en el mismo, vinculándose a sectores del peronismo histórico y al trabajo barrial.Proponemos privilegiar el análisis de documentos, aunque incluimos también algunos testimonios que nos sirven de apoyo. A partir de allí pretendemos explorar algunos “componentes contestatarios”, ligados al clima de ideas de la época, y visualizar cómo este actor colectivo se posiciona dentro de las categorías de “juventud” y del “estudiantado”, que aparecen en el discurso, considerando que el FEN reivindicó constantemente su carácter de tendencia estudiantil universitaria y su militancia juvenil.

  10. Análisis de los fenómenos meteorológicos que provocaron penetraciones del mar en el Malecón habanero.

    Directory of Open Access Journals (Sweden)

    Lázara Díaz Maqueira

    2003-03-01

    Full Text Available Se presenta la caracterización de algunos de los fenómenos meteorológicos peligrosos que produjeron penetraciones del mar en el Malecón habanero y su tipificación sinóptica, con el objetivo de que se utilice como herramienta de trabajo para predecir con suficiente antelación este fenómeno y de esta forma disminuir las consecuencias del mismo en el área urbana aledaña. También se realiza una descripción del Malecón habanero por tramos y los factores que producen las inundaciones costeras por penetraciones del mar. La comprensión de las interacciones entre las características constructivas del Malecón y los factores desencadenantes de las inundaciones han ayudado a predecir la magnitud del fenómeno y alertar convenientemente a las organizaciones estatales e intereses costeros para que tomen las medidas requeridas en cada caso.

  11. Conteúdo de fenólicos, flavonoides totais e atividade antioxidante de amostras de própolis comerciais

    Directory of Open Access Journals (Sweden)

    Elizângela Alves

    2013-01-01

    Full Text Available Neste trabalho foram determinadas algumas características físico-químicas de própolis de Santa Maria- RS. Foram analisadas seis amostras comerciais obtidas em farmácias e lojas de produtos naturais na cidade citada. A composição química, quanto aos fenólicos e flavonoides totais, assim como a atividade antioxidante, foi testada e comparada. A alta atividade antioxidante dos extratos puros (ou diluídos foi explicada pelo teor dos flavonoides e fenólicos totais, confirmando a relação desses compostos na ação preventiva contra radicais livres. As seis amostras comerciais analisadas possuíram de fenólicos 70,60 mg a 539,10 mg (expresso em mg de ácido gálico/g de extrato de própolis e de flavonoides 48,95 mg a 114,50 mg (expresso em mg de quercetina/g de extrato de própolis. A atividade antioxidante maior foi do extrato aquoso, tanto pela inibição do radical DPPH quanto pela atividade quelante. No extrato aquoso de própolis obteve-se resultados satisfatórios para uma futura aplicação em alimento.

  12. DNA Polymerase α (swi7) and the Flap Endonuclease Fen1 (rad2) Act Together in the S-Phase Alkylation Damage Response in S. pombe

    Science.gov (United States)

    Koulintchenko, Milana; Vengrova, Sonya; Eydmann, Trevor; Arumugam, Prakash; Dalgaard, Jacob Z.

    2012-01-01

    Polymerase α is an essential enzyme mainly mediating Okazaki fragment synthesis during lagging strand replication. A specific point mutation in Schizosaccharomyces pombe polymerase α named swi7-1, abolishes imprinting required for mating-type switching. Here we investigate whether this mutation confers any genome-wide defects. We show that the swi7-1 mutation renders cells hypersensitive to the DNA damaging agents methyl methansulfonate (MMS), hydroxyurea (HU) and UV and incapacitates activation of the intra-S checkpoint in response to DNA damage. In addition we show that, in the swi7-1 background, cells are characterized by an elevated level of repair foci and recombination, indicative of increased genetic instability. Furthermore, we detect novel Swi1-, -Swi3- and Pol α- dependent alkylation damage repair intermediates with mobility on 2D-gel that suggests presence of single-stranded regions. Genetic interaction studies showed that the flap endonuclease Fen1 works in the same pathway as Pol α in terms of alkylation damage response. Fen1 was also required for formation of alkylation- damage specific repair intermediates. We propose a model to explain how Pol α, Swi1, Swi3 and Fen1 might act together to detect and repair alkylation damage during S-phase. PMID:23071723

  13. As "confrarias" como um fenômeno organizacional brasileiro: uma reflexão sobre significados

    Directory of Open Access Journals (Sweden)

    Luis Claudio Miranda Mangi

    Full Text Available Apesar da grande quantidade de artigos acadêmicos sobre a importância dos grupos informais, produzidos nas últimas duas décadas, a maior parte dos estudos limitou-se à análise da influência das redes interorganizacionais na competitividade e na capacidade de mudança das empresas. Neste artigo, argumenta-se que os grupos informais são reproduções sociais do contexto onde estão inseridos, e que seu poder de influência precisa ser investigado numa perspectiva ampliada, interdisciplinar, onde o objeto possa ser analisado, simultaneamente, dos pontos de vista inter e intra-organizacional. Para isso, pretende-se realizar uma reflexão crítica sobre o fenômeno das "confrarias", as quais são vistas como grupos informais que emergem nas organizações a partir de valores socialmente construídos e compartilhados. O principal questionamento teórico é quanto à natureza dos valores e lógicas de ação compartilhados pelos seus participantes, dos recursos de poder de que dispõem e de como esses participantes utilizam tais recursos para atingir seus objetivos. É proposto um modelo analítico para explicar a dinâmica do processo de surgimento e legitimação das "confrarias", desenvolvido a partir dos mais recentes conceitos elaborados segundo a teoria institucional.

  14. Uncovering the formation and selection of benzylmalonyl-CoA from the biosynthesis of splenocin and enterocin reveals a versatile way to introduce amino acids into polyketide carbon scaffolds.

    Science.gov (United States)

    Chang, Chenchen; Huang, Rong; Yan, Yan; Ma, Hongmin; Dai, Zheng; Zhang, Benying; Deng, Zixin; Liu, Wen; Qu, Xudong

    2015-04-01

    Selective modification of carbon scaffolds via biosynthetic engineering is important for polyketide structural diversification. Yet, this scope is currently restricted to simple aliphatic groups due to (1) limited variety of CoA-linked extender units, which lack aromatic structures and chemical reactivity, and (2) narrow acyltransferase (AT) specificity, which is limited to aliphatic CoA-linked extender units. In this report, we uncovered and characterized the first aromatic CoA-linked extender unit benzylmalonyl-CoA from the biosynthetic pathways of splenocin and enterocin in Streptomyces sp. CNQ431. Its synthesis employs a deamination/reductive carboxylation strategy to convert phenylalanine into benzylmalonyl-CoA, providing a link between amino acid and CoA-linked extender unit synthesis. By characterization of its selection, we further validated that AT domains of splenocin, and antimycin polyketide synthases are able to select this extender unit to introduce the phenyl group into their dilactone scaffolds. The biosynthetic machinery involved in the formation of this extender unit is highly versatile and can be potentially tailored for tyrosine, histidine and aspartic acid. The disclosed aromatic extender unit, amino acid-oriented synthetic pathway, and aromatic-selective AT domains provides a systematic breakthrough toward current knowledge of polyketide extender unit formation and selection, and also opens a route for further engineering of polyketide carbon scaffolds using amino acids.

  15. Analysis of the LIV System of Campylobacter jejuni Reveals Alternative Roles for LivJ and LivK in Commensalism beyond Branched-Chain Amino Acid Transport ▿

    Science.gov (United States)

    Ribardo, Deborah A.; Hendrixson, David R.

    2011-01-01

    Campylobacter jejuni is a leading cause of diarrheal disease in humans and an intestinal commensal in poultry and other agriculturally important animals. These zoonotic infections result in significant amounts of C. jejuni present in the food supply to contribute to disease in humans. We previously found that a transposon insertion in Cjj81176_1038, encoding a homolog of the Escherichia coli LivJ periplasmic binding protein of the leucine, isoleucine, and valine (LIV) branched-chain amino acid transport system, reduced the commensal colonization capacity of C. jejuni 81-176 in chicks. Cjj81176_1038 is the first gene of a six-gene locus that encodes homologous components of the E. coli LIV system. By analyzing mutants with in-frame deletions of individual genes or pairs of genes, we found that this system constitutes a LIV transport system in C. jejuni responsible for a high level of leucine acquisition and, to a lesser extent, isoleucine and valine acquisition. Despite each LIV protein being required for branched-chain amino acid transport, only the LivJ and LivK periplasmic binding proteins were required for wild-type levels of commensal colonization of chicks. All LIV permease and ATPase components were dispensable for in vivo growth. These results suggest that the biological functions of LivJ and LivK for colonization are more complex than previously hypothesized and extend beyond a role for binding and acquiring branched-chain amino acids during commensalism. In contrast to other studies indicating a requirement and utilization of other specific amino acids for colonization, acquisition of branched-chain amino acids does not appear to be a determinant for C. jejuni during commensalism. PMID:21949065

  16. Symbiosis revisited: phosphorus and acid buffering stimulate N2 fixation but not Sphagnum growth

    Science.gov (United States)

    van den Elzen, Eva; Kox, Martine A. R.; Harpenslager, Sarah F.; Hensgens, Geert; Fritz, Christian; Jetten, Mike S. M.; Ettwig, Katharina F.; Lamers, Leon P. M.

    2017-03-01

    In pristine Sphagnum-dominated peatlands, (di)nitrogen (N2) fixing (diazotrophic) microbial communities associated with Sphagnum mosses contribute substantially to the total nitrogen input, increasing carbon sequestration. The rates of symbiotic nitrogen fixation reported for Sphagnum peatlands, are, however, highly variable, and experimental work on regulating factors that can mechanistically explain this variation is largely lacking. For two common fen species (Sphagnum palustre and S. squarrosum) from a high nitrogen deposition area (25 kg N ha-1 yr-1), we found that diazotrophic activity (as measured by 15 - 15N2 labeling) was still present at a rate of 40 nmol N gDW-1 h-1. This was surprising, given that nitrogen fixation is a costly process. We tested the effects of phosphorus availability and buffering capacity by bicarbonate-rich water, mimicking a field situation in fens with stronger groundwater or surface water influence, as potential regulators of nitrogen fixation rates and Sphagnum performance. We expected that the addition of phosphorus, being a limiting nutrient, would stimulate both diazotrophic activity and Sphagnum growth. We indeed found that nitrogen fixation rates were doubled. Plant performance, in contrast, did not increase. Raised bicarbonate levels also enhanced nitrogen fixation, but had a strong negative impact on Sphagnum performance. These results explain the higher nitrogen fixation rates reported for minerotrophic and more nutrient-rich peatlands. In addition, nitrogen fixation was found to strongly depend on light, with rates 10 times higher in light conditions suggesting high reliance on phototrophic organisms for carbon. The contrasting effects of phosphorus and bicarbonate on Sphagnum spp. and their diazotrophic communities reveal strong differences in the optimal niche for both partners with respect to conditions and resources. This suggests a trade-off for the symbiosis of nitrogen fixing microorganisms with their Sphagnum

  17. Análisis de fenómenos de localización en materiales cohesivo-friccionales

    Directory of Open Access Journals (Sweden)

    Martínez Cutillas, Francisco J.

    1994-08-01

    Full Text Available The growth of the finite element method as a tool in structural analysis requires the use of concrete models capable of exhibiting responses beyond the elastic range. In recent years, considerable interest has arisen in the characterization and modeling of materials which include a softening phase in their mechanical behaviour. This softening is often related to the interaction between microstructural components of the material, which results in the generation of non-homogeneous strain states where deformations are localized in relatively thin bands. The object of this work is to contribute to the numerical analysis of the phenomenon of strain localization as it arises in cohesive frictional materials. Special attention is paid to the behaviour of mass concrete and, particularly, to its characterization and modeling during uniaxial compression.

    El creciente empleo del método de los elementos finitos como herramienta de cálculo estructural requiere la definición de modelos de hormigón capaces de reproducir respuestas más allá del rango eminentemente elástico. En los últimos años ha crecido fuertemente el interés en la caracterización y modelización de materiales cuyo comportamiento mecánico incluye una fase de reblandecimiento en las etapas próximas a la rotura. En muchos casos dicho reblandecimiento está asociado a la interacción entre los componentes microestructurales del material que genera estados de deformación no homogéneos con una localización de las deformaciones en bandas de pequeño espesor. El objeto del presente trabajo es contribuir al análisis por métodos numéricos del fenómeno de localización de deformaciones en materiales cohesivo fricciónales. Se dedica especial atención al hormigón en masa y, de manera particular, a la caracterización y modelización de su comportamiento en compresión uniaxial.

  18. High net CO2 and CH4 release at a eutrophic shallow lake on a formerly drained fen

    Science.gov (United States)

    Franz, Daniela; Koebsch, Franziska; Larmanou, Eric; Augustin, Jürgen; Sachs, Torsten

    2016-05-01

    Drained peatlands often act as carbon dioxide (CO2) hotspots. Raising the groundwater table is expected to reduce their CO2 contribution to the atmosphere and revitalise their function as carbon (C) sink in the long term. Without strict water management rewetting often results in partial flooding and the formation of spatially heterogeneous, nutrient-rich shallow lakes. Uncertainties remain as to when the intended effect of rewetting is achieved, as this specific ecosystem type has hardly been investigated in terms of greenhouse gas (GHG) exchange. In most cases of rewetting, methane (CH4) emissions increase under anoxic conditions due to a higher water table and in terms of global warming potential (GWP) outperform the shift towards CO2 uptake, at least in the short term.Based on eddy covariance measurements we studied the ecosystem-atmosphere exchange of CH4 and CO2 at a shallow lake situated on a former fen grassland in northeastern Germany. The lake evolved shortly after flooding, 9 years previous to our investigation period. The ecosystem consists of two main surface types: open water (inhabited by submerged and floating vegetation) and emergent vegetation (particularly including the eulittoral zone of the lake, dominated by Typha latifolia). To determine the individual contribution of the two main surface types to the net CO2 and CH4 exchange of the whole lake ecosystem, we combined footprint analysis with CH4 modelling and net ecosystem exchange partitioning.The CH4 and CO2 dynamics were strikingly different between open water and emergent vegetation. Net CH4 emissions from the open water area were around 4-fold higher than from emergent vegetation stands, accounting for 53 and 13 g CH4 m-2 a-1 respectively. In addition, both surface types were net CO2 sources with 158 and 750 g CO2 m-2 a-1 respectively. Unusual meteorological conditions in terms of a warm and dry summer and a mild winter might have facilitated high respiration rates. In sum, even after 9

  19. Biodegradación de los compuestos fenólicos presentes en el alpechín

    Directory of Open Access Journals (Sweden)

    Maestro Durán, R.

    1991-08-01

    Full Text Available Oil-mill wastewater is the main responsible of the pollution in Andalusian due to high content of organic substances. Its depuration by methanization is difficult because of the antimicrobial activity of phenolic derivatives. These compounds can be drastically reduced by a previous aerobic treatment of the oil mill wastewater with specific microorganisms. After this pretreatment, anaerobic depuration takes place without inhibition, the velocity of the reaction being 5 times higher than before the pretreatment. In this paper a qualitative study of the phenols present in oil-mill wastewater by thin layer chromatography has been done. Beside that, quantitative determination of total phenols, ortoand meta-diphenols as well as Chemical Oxigen Demand (COD before the treatment, after the pretreatment and after biomethanization have been carried out. Finally, leucoanthocyanins that could originate polymerized phenols have not been found.

    Las aguas residuales de la obtención del aceite de oliva o alpechines son responsables de la mayor contaminación medioambiental de Andalucía por su elevada carga de materia orgánica. Su depuración por biometanización es difícil debido a la actividad antimicrobiana de los compuestos fenólicos. Este tipo de sustancias puede eliminarse en gran parte tratando previamente el alpechín por vía aerobia con microorganismos específicos, después de lo cual la depuración anaerobia tiene lugar sin inhibiciones, siendo la constante de velocidad cinco veces superior a la de antes del pretratamiento. En este trabajo se hace un estudio cualitativo de los fenoles por cromatografía en capa fina y cuantitativo de los fenoles totales, orto- y meta-difenoles, así como de la Demanda Química de Oxígeno del alpechín antes del tratamiento, después del pretratamiento y después de la biometanización. Se ha comprobado también la ausencia de leucoantocianinas que pudieran dar origen a fenoles polimerizados.

  20. Belowground in situ redox dynamics and methanogenesis recovery in a degraded fen during dry-wet cycles and flooding

    Directory of Open Access Journals (Sweden)

    C. Estop-Aragonés

    2013-01-01

    Full Text Available Climate change induced drying and flooding may alter the redox conditions of organic matter decomposition in peat soils. The seasonal and intermittent changes in pore water solutes (NO3, Fe2+, SO42−, H2S, acetate and dissolved soil gases (CO2, O2, CH4, H2 under natural water table fluctuations were compared to the response under a reinforced drying and flooding in fen peats. Oxygen penetration during dryings led to CO2 and CH4 degassing and to a regeneration of dissolved electron acceptors (NO3, Fe3+ and SO42−. Drying intensity controlled the extent of the electron acceptor regeneration. Iron was rapidly reduced and sulfate pools ~ 1 mM depleted upon rewetting and CH4 did not substantially accumulate until sulfate levels declined to ~ 100 μmol L−1. The post-rewetting recovery of soil methane concentrations to levels ~ 80 μmol L−1 needed 40–50 days after natural drought. This recovery was prolonged after experimentally reinforced drought. A greater regeneration of electron acceptors during drying was not related to prolonged methanogenesis suppression after rewetting. Peat compaction, solid phase content of reactive iron and total reduced inorganic sulfur and organic matter content controlled oxygen penetration, the regeneration of electron acceptors and the recovery of CH4 production, respectively. Methane production was maintained despite moderate water table decline of 20 cm in denser peats. Flooding led to accumulation of acetate and H2, promoted CH4 production and strengthened the co-occurrence of iron and sulfate reduction and methanogenesis. Mass balances during drying and flooding indicated that an important fraction of the electron flow must have been used for the

  1. Aspartic acid

    Science.gov (United States)

    ... we eat. Aspartic acid is also called asparaginic acid. Aspartic acid helps every cell in the body work. It ... release Normal nervous system function Plant sources of aspartic acid include: avocado, asparagus, and molasses. Animal sources of ...

  2. Genomic phenotyping by barcode sequencing broadly distinguishes between alkylating agents, oxidizing agents, and non-genotoxic agents, and reveals a role for aromatic amino acids in cellular recovery after quinone exposure.

    Science.gov (United States)

    Svensson, J Peter; Quirós Pesudo, Laia; McRee, Siobhan K; Adeleye, Yeyejide; Carmichael, Paul; Samson, Leona D

    2013-01-01

    Toxicity screening of compounds provides a means to identify compounds harmful for human health and the environment. Here, we further develop the technique of genomic phenotyping to improve throughput while maintaining specificity. We exposed cells to eight different compounds that rely on different modes of action: four genotoxic alkylating (methyl methanesulfonate (MMS), N-Methyl-N-nitrosourea (MNU), N,N'-bis(2-chloroethyl)-N-nitroso-urea (BCNU), N-ethylnitrosourea (ENU)), two oxidizing (2-methylnaphthalene-1,4-dione (menadione, MEN), benzene-1,4-diol (hydroquinone, HYQ)), and two non-genotoxic (methyl carbamate (MC) and dimethyl sulfoxide (DMSO)) compounds. A library of S. cerevisiae 4,852 deletion strains, each identifiable by a unique genetic 'barcode', were grown in competition; at different time points the ratio between the strains was assessed by quantitative high throughput 'barcode' sequencing. The method was validated by comparison to previous genomic phenotyping studies and 90% of the strains identified as MMS-sensitive here were also identified as MMS-sensitive in a much lower throughput solid agar screen. The data provide profiles of proteins and pathways needed for recovery after both genotoxic and non-genotoxic compounds. In addition, a novel role for aromatic amino acids in the recovery after treatment with oxidizing agents was suggested. The role of aromatic acids was further validated; the quinone subgroup of oxidizing agents were extremely toxic in cells where tryptophan biosynthesis was compromised.

  3. In Folio Respiratory Fluxomics Revealed by {sup 13}C Isotopic Labeling and H/D Isotope Effects Highlight the Non-cyclic Nature of the Tricarboxylic Acid 'Cycle' in Illuminated Leaves

    Energy Technology Data Exchange (ETDEWEB)

    Tcherkez, G.; Mahe, A.; Gauthier, P.; Hodges, M. [Institut de Biotechnologie des Plantes, Plateforme Metabolisme-Metabolome IFR87, Batiment 630, Universite Paris-Sud 11, 91405 Orsay cedex (France); Tcherkez, G.; Mauve, C.; Cornic, G. [Laboratoire d' Ecophysiologie Vegetale, Ecologie Systematique Evolution (G.C.), Batiment 630, Universite Paris-Sud 11, 91405 Orsay cedex (France); Gout, E.; Bligny, R. [Laboratoire de Physiologie Cellulaire Vegetale, Commissariat a l' Energie Atomique-Grenoble, 38054 Grenoble cedex 9 (France)

    2009-07-01

    While the possible importance of the tricarboxylic acid (TCA) cycle reactions for leaf photosynthesis operation has been recognized, many uncertainties remain on whether TCA cycle biochemistry is similar in the light compared with the dark. It is widely accepted that leaf day respiration and the metabolic commitment to TCA decarboxylation are down-regulated in illuminated leaves. However, the metabolic basis (i.e. the limiting steps involved in such a down-regulation) is not well known. Here, we investigated the in vivo metabolic fluxes of individual reactions of the TCA cycle by developing two isotopic methods, {sup 13}C tracing and fluxomics and the use of H/D isotope effects, with Xanthium strumarium leaves. We provide evidence that the TCA 'cycle' does not work in the forward direction like a proper cycle but, rather, operates in both the reverse and forward directions to produce fumarate and glutamate, respectively. Such a functional division of the cycle plausibly reflects the compromise between two contrasted forces: (1) the feedback inhibition by NADH and ATP on TCA enzymes in the light, and (2) the need to provide pH-buffering organic acids and carbon skeletons for nitrate absorption and assimilation. (authors)

  4. Genomic phenotyping by barcode sequencing broadly distinguishes between alkylating agents, oxidizing agents, and non-genotoxic agents, and reveals a role for aromatic amino acids in cellular recovery after quinone exposure.

    Directory of Open Access Journals (Sweden)

    J Peter Svensson

    Full Text Available Toxicity screening of compounds provides a means to identify compounds harmful for human health and the environment. Here, we further develop the technique of genomic phenotyping to improve throughput while maintaining specificity. We exposed cells to eight different compounds that rely on different modes of action: four genotoxic alkylating (methyl methanesulfonate (MMS, N-Methyl-N-nitrosourea (MNU, N,N'-bis(2-chloroethyl-N-nitroso-urea (BCNU, N-ethylnitrosourea (ENU, two oxidizing (2-methylnaphthalene-1,4-dione (menadione, MEN, benzene-1,4-diol (hydroquinone, HYQ, and two non-genotoxic (methyl carbamate (MC and dimethyl sulfoxide (DMSO compounds. A library of S. cerevisiae 4,852 deletion strains, each identifiable by a unique genetic 'barcode', were grown in competition; at different time points the ratio between the strains was assessed by quantitative high throughput 'barcode' sequencing. The method was validated by comparison to previous genomic phenotyping studies and 90% of the strains identified as MMS-sensitive here were also identified as MMS-sensitive in a much lower throughput solid agar screen. The data provide profiles of proteins and pathways needed for recovery after both genotoxic and non-genotoxic compounds. In addition, a novel role for aromatic amino acids in the recovery after treatment with oxidizing agents was suggested. The role of aromatic acids was further validated; the quinone subgroup of oxidizing agents were extremely toxic in cells where tryptophan biosynthesis was compromised.

  5. In Folio Respiratory Fluxomics Revealed by 13C Isotopic Labeling and H/D Isotope Effects Highlight the Non-cyclic Nature of the Tricarboxylic Acid 'Cycle' in Illuminated Leaves

    International Nuclear Information System (INIS)

    Tcherkez, G.; Mahe, A.; Gauthier, P.; Hodges, M.; Tcherkez, G.; Mauve, C.; Cornic, G.; Gout, E.; Bligny, R.

    2009-01-01

    While the possible importance of the tricarboxylic acid (TCA) cycle reactions for leaf photosynthesis operation has been recognized, many uncertainties remain on whether TCA cycle biochemistry is similar in the light compared with the dark. It is widely accepted that leaf day respiration and the metabolic commitment to TCA decarboxylation are down-regulated in illuminated leaves. However, the metabolic basis (i.e. the limiting steps involved in such a down-regulation) is not well known. Here, we investigated the in vivo metabolic fluxes of individual reactions of the TCA cycle by developing two isotopic methods, 13 C tracing and fluxomics and the use of H/D isotope effects, with Xanthium strumarium leaves. We provide evidence that the TCA 'cycle' does not work in the forward direction like a proper cycle but, rather, operates in both the reverse and forward directions to produce fumarate and glutamate, respectively. Such a functional division of the cycle plausibly reflects the compromise between two contrasted forces: (1) the feedback inhibition by NADH and ATP on TCA enzymes in the light, and (2) the need to provide pH-buffering organic acids and carbon skeletons for nitrate absorption and assimilation. (authors)

  6. In Folio Respiratory Fluxomics Revealed by {sup 13}C Isotopic Labeling and H/D Isotope Effects Highlight the Non-cyclic Nature of the Tricarboxylic Acid 'Cycle' in Illuminated Leaves

    Energy Technology Data Exchange (ETDEWEB)

    Tcherkez, G; Mahe, A; Gauthier, P; Hodges, M [Institut de Biotechnologie des Plantes, Plateforme Metabolisme-Metabolome IFR87, Batiment 630, Universite Paris-Sud 11, 91405 Orsay cedex (France); Tcherkez, G; Mauve, C; Cornic, G [Laboratoire d' Ecophysiologie Vegetale, Ecologie Systematique Evolution (G.C.), Batiment 630, Universite Paris-Sud 11, 91405 Orsay cedex (France); Gout, E; Bligny, R [Laboratoire de Physiologie Cellulaire Vegetale, Commissariat a l' Energie Atomique-Grenoble, 38054 Grenoble cedex 9 (France)

    2009-07-01

    While the possible importance of the tricarboxylic acid (TCA) cycle reactions for leaf photosynthesis operation has been recognized, many uncertainties remain on whether TCA cycle biochemistry is similar in the light compared with the dark. It is widely accepted that leaf day respiration and the metabolic commitment to TCA decarboxylation are down-regulated in illuminated leaves. However, the metabolic basis (i.e. the limiting steps involved in such a down-regulation) is not well known. Here, we investigated the in vivo metabolic fluxes of individual reactions of the TCA cycle by developing two isotopic methods, {sup 13}C tracing and fluxomics and the use of H/D isotope effects, with Xanthium strumarium leaves. We provide evidence that the TCA 'cycle' does not work in the forward direction like a proper cycle but, rather, operates in both the reverse and forward directions to produce fumarate and glutamate, respectively. Such a functional division of the cycle plausibly reflects the compromise between two contrasted forces: (1) the feedback inhibition by NADH and ATP on TCA enzymes in the light, and (2) the need to provide pH-buffering organic acids and carbon skeletons for nitrate absorption and assimilation. (authors)

  7. In Folio Respiratory Fluxomics Revealed by 13C Isotopic Labeling and H/D Isotope Effects Highlight the Noncyclic Nature of the Tricarboxylic Acid “Cycle” in Illuminated Leaves1[W

    Science.gov (United States)

    Tcherkez, Guillaume; Mahé, Aline; Gauthier, Paul; Mauve, Caroline; Gout, Elizabeth; Bligny, Richard; Cornic, Gabriel; Hodges, Michael

    2009-01-01

    While the possible importance of the tricarboxylic acid (TCA) cycle reactions for leaf photosynthesis operation has been recognized, many uncertainties remain on whether TCA cycle biochemistry is similar in the light compared with the dark. It is widely accepted that leaf day respiration and the metabolic commitment to TCA decarboxylation are down-regulated in illuminated leaves. However, the metabolic basis (i.e. the limiting steps involved in such a down-regulation) is not well known. Here, we investigated the in vivo metabolic fluxes of individual reactions of the TCA cycle by developing two isotopic methods, 13C tracing and fluxomics and the use of H/D isotope effects, with Xanthium strumarium leaves. We provide evidence that the TCA “cycle” does not work in the forward direction like a proper cycle but, rather, operates in both the reverse and forward directions to produce fumarate and glutamate, respectively. Such a functional division of the cycle plausibly reflects the compromise between two contrasted forces: (1) the feedback inhibition by NADH and ATP on TCA enzymes in the light, and (2) the need to provide pH-buffering organic acids and carbon skeletons for nitrate absorption and assimilation. PMID:19675152

  8. Substâncias fenólicas, flavonoides e capacidade antioxidante em erveiras sob diferentes coberturas do solo e sombreamentos

    Directory of Open Access Journals (Sweden)

    T.S. FERRERA

    Full Text Available RESUMO Objetivou neste trabalho analisar a concentração de polifenóis totais, flavonoides e capacidade antioxidantes por meio dos métodos ABTS e FRAP, em erveiras jovens cultivadas em solo coberto e com sombreamento. Mudas de erva-mate foram submetidas aos tratamentos com solos cobertos e desnudos em sombreamentos de 0, 18, 35 e 50%, após sete e onze meses de cultivo, verão e outono, respectivamente. Foram coletadas folhas maduras para realização dos extratos utilizados para as análises de compostos fenólicos por meio da reação de oxirredução com reagente de Folin-Ciocalteu, flavonoides por método colorimétrico e capacidade antioxidante por frente ao radical ABTS e poder de redução do ferro (FRAP. O teor de compostos fenólicos foi maior nos tratamentos com 35% de sombreamento em comparação ao grupo dos flavonoides e capacidade antioxidante, o que foi demonstrado pela correlação do sombreamento com estes parametros. No método FRAP a maior correlação demonstra que o outono é a melhor época de colheita por apresentar maior concentração de compostos fitoquímicos. Ficou evidente a influência positiva dos sombreamentos (35 e 50% no teor de compostos fenólicos e flavonoides relacionados à capacidade antioxidante e à qualidade da erva-mate para atender ao mercado consumidor.

  9. El fenómeno del apoyo al aprendizaje fuera de la escuela visto a través de un análisis comparado

    Directory of Open Access Journals (Sweden)

    Alexandre Ventura

    2006-01-01

    Full Text Available La prácticas de apoyo al aprendizaje fuera de la escuela, que se analizan en este artículo, han merecido nuestra atención por diversas razones: 1 el hecho de que son prácticamente un fenómeno mundial, a pesar de los sistemas educativos difieran de un país a otro; 2 el hecho de que las repercusiones de las explicaciones sobre los resultados escolares puedan llevar a una reubicación de los principios de equidad e igualdad de oportunidades; 3 la constatación de que los costes financieros soportados por las familias de los alumnos, por un lado, y el número creciente de “explicadores” disponibles (trabajando a tiempo parcial o en jornada completa, por otro, confieren a esta actividad una importancia social y económica considerable. Este abordaje prima un análisis cualitativo del fenómeno de las clases particulares, con el objetivo de conocer mejor algunas de sus formas: su ejercicio en exclusividad o como complemento del salario obtenido en el decurso de otra actividad; como iniciativa de base individual, característica de una actividad liberal; en el contexto de un centro/academia local; o en el contexto de un centro de estudios con franquicia, de dimensión nacional o multinacional. Al realizar un análisis comparado de este fenómeno, buscaremos mostrar como las explicaciones constituyen una actividad promovida de forma creciente en organizaciones (centros de explicaciones, sobre todo en los grandes centros urbanos. Estos centros de explicaciones están para suplementar o competir con las escuelas utilizando metodologías de sistematización o especialización.

  10. Correlações entre compostos fenólicos e atividade antioxidante em casca e polpa de variedades de uva de mesa

    Directory of Open Access Journals (Sweden)

    Angela Vacaro de Souza

    2018-02-01

    Full Text Available Resumo Uvas são consideradas excelentes fontes de compostos fenólicos, quando comparadas a outros vegetais; porém, a grande diversidade entre as cultivares resulta em frutos com diferentes características, tanto de sabor quanto de coloração, o que, certamente, está associado com o conteúdo e o perfil de compostos polifenólicos. Cascas e polpas de amostras de uva no ponto de consumo − tipos “Itália”, “Brasil”, “Rubi”, “Thompson” e “Niágara Rosada” − da região de Campinas e Jundiaí, Estado de São Paulo, foram estudadas com o objetivo de avaliar a atividade antioxidante, a atividade enzimática da peroxidase e da polifenoloxidase e os teores de compostos fenólicos e de ácido ascórbico. A fim de verificar as correlações entre as cascas e polpas das variedades e as características, utilizou-se a Correlação de Pearson, a distância generalizada de Mahalanobis (D2 e, por fim, o agrupamento das diferentes respostas através da análise multivariada. Verificou-se que as cascas das uvas analisadas apresentaram correlação positiva com o conteúdo de compostos fenólicos, a atividade da enzima polifenoloxidase e com o teor de ácido ascórbico, exceto a cultivar “Niágara Rosada”, a qual mostrou maiores valores para estas avaliações. Não houve correlação entre o índice de atividade antioxidante com as demais análises realizadas. As cascas se mostraram uma ótima fonte para estes compostos.

  11. Atividade antimicrobiana, antioxidante e teor de compostos fenólicos em casca e amêndoa de frutos de manga

    Directory of Open Access Journals (Sweden)

    Kettelin Aparecida Arbos

    2013-04-01

    Full Text Available O processamento industrial de frutos de manga gera elevada quantidade de resíduos agroindustriais, representados pelas cascas e sementes (amêndoa, os quais, sem aplicação viável, acabam sendo descartados diretamente no meio ambiente. Esses resíduos são ricos em compostos bioativos, amplamente reconhecidos pelas suas propriedades promotoras da saúde e em aplicações tecnológicas. Os objetivos foram avaliar as atividades antimicrobiana e antioxidante e o teor de compostos fenólicos de dois extratos: um obtido da casca (FC e outro da amêndoa (FA de manga variedade 'Tommy Atkins'. O teor de compostos fenólicos totais variou de 3.123 a 6.644 mg de catequina/100 g. Os extratos FC e FA demonstraram relevante atividade antimicrobiana frente às cepas das bactérias Escherichia coli, Salmonella sp., Pseudomonas aeruginosa . Staphylococcus aureus, determinadas pelo método de difusão em disco. A ação antioxidante de FC e FA aumentou com o aumento das concentrações testadas, atingindo o valor máximo de 88% (FC. Em todas as concentrações testadas os extratos FC apresentaram ação antioxidante significativamente superior às respectivas concentrações dos extratos FA. Esses resultados sugerem potencial aplicação dos resíduos de manga como fonte de compostos fenólicos, substâncias antimicrobianas e antioxidantes, podendo ser explorados pelas indústrias de alimentos.

  12. Efecto antifúngico de extractos fenólicos y de carotenoides de chiltepín (Capsicum annum var. glabriusculum en Alternaria alternata y Fusarium oxysporum

    Directory of Open Access Journals (Sweden)

    Alfonso Rodriguez-Maturino

    2015-03-01

    Full Text Available En el presente estudio se evaluó el efecto de extractos fenólicos y de carotenoides procedentes de frutos de chiltepín sobre el crecimiento micelial y la germinación de conidios de Alternaria alternata y Fusarium oxysporum, 2 importantes hongos causantes de podredumbres en frutas y hortalizas. Los extractos fenólicos presentaron una inhibición en el crecimiento micelial de A. alternata del 38,46 %, y redujeron significativamente la germinación de conidios al quinto día después del tratamiento al 92 % en relación al control. No se observaron cambios significativos en el crecimiento micelial de F. oxysporum, pero sí se redujo significativamente al 85 % en relación al control, el número de conidios germinados a los 5 días de tratamiento. Los extractos de carotenoides mostraron una inhibición del 38,5 % en el crecimiento micelial y del 85,3 % en la germinación de conidios de A. alternata, 5 días después del tratamiento. Frente a F. oxysporum, dichos extractos presentaron menor inhibición del crecimiento micelial (20,3 %, mientras que hubo una mayor inhibición en la germinación de conidios (96 %. Los extractos fenólicos y de carotenoides de chiltepín pueden ser una alternativa promisoria de importancia agrícola como fungicidas naturales.

  13. Oncogenicity of L-type amino-acid transporter 1 (LAT1) revealed by targeted gene disruption in chicken DT40 cells: LAT1 is a promising molecular target for human cancer therapy

    Energy Technology Data Exchange (ETDEWEB)

    Ohkawa, Mayumi [Molecular Cell Biology Laboratory, Graduate School of Pharmaceutical Sciences, Tohoku University, Aoba Aramaki, Aoba-ku, Sendai 980-8578 (Japan); Ohno, Yoshiya [Laboratory of Immunobiology, Department of Pharmacy, School of Pharmacy, Hyogo University of Health Sciences, Kobe-shi, Hyogo 650-8530 (Japan); Masuko, Kazue; Takeuchi, Akiko; Suda, Kentaro; Kubo, Akihiro; Kawahara, Rieko; Okazaki, Shogo [Cell Biology Laboratory, Department of Pharmaceutical Sciences, School of Pharmacy, Kinki University, 4-1 Kowakae 3-chome, Higashiosaka-shi, Osaka 577-8502 (Japan); Tanaka, Toshiyuki [Laboratory of Immunobiology, Department of Pharmacy, School of Pharmacy, Hyogo University of Health Sciences, Kobe-shi, Hyogo 650-8530 (Japan); Saya, Hideyuki [Division of Gene Regulation, Institute for Advanced Medical Research, School of Medicine, Keio University, 35 Shinano-machi, Shinjuku-ku, Tokyo 160-8502 (Japan); Seki, Masayuki; Enomoto, Takemi [Molecular Cell Biology Laboratory, Graduate School of Pharmaceutical Sciences, Tohoku University, Aoba Aramaki, Aoba-ku, Sendai 980-8578 (Japan); Yagi, Hideki [Cell Biology Laboratory, Department of Pharmaceutical Sciences, School of Pharmacy, Kinki University, 4-1 Kowakae 3-chome, Higashiosaka-shi, Osaka 577-8502 (Japan); Hashimoto, Yoshiyuki [Tohoku University, Sendai (Japan); Masuko, Takashi, E-mail: masuko@phar.kindai.ac.jp [Cell Biology Laboratory, Department of Pharmaceutical Sciences, School of Pharmacy, Kinki University, 4-1 Kowakae 3-chome, Higashiosaka-shi, Osaka 577-8502 (Japan)

    2011-03-25

    Highlights: {yields} We established LAT1 amino-acid transporter-disrupted DT40 cells. {yields} LAT1-disrupted cells showed slow growth and lost the oncogenicity. {yields} siRNA and mAb inhibited human tumor growth in vitro and in vivo. {yields} LAT1 is a promising target molecule for cancer therapy. -- Abstract: L-type amino-acid transporter 1 (LAT1) is the first identified light chain of CD98 molecule, disulfide-linked to a heavy chain of CD98. Following cDNA cloning of chicken full-length LAT1, we have constructed targeting vectors for the disruption of chicken LAT1 gene from genomic DNA of chicken LAT1 consisting of 5.4 kb. We established five homozygous LAT1-disrupted (LAT1{sup -/-}) cell clones, derived from a heterozygous LAT1{sup +/-} clone of DT40 chicken B cell line. Reactivity of anti-chicken CD98hc monoclonal antibody (mAb) with LAT1{sup -/-} DT40 cells was markedly decreased compared with that of wild-type DT40 cells. All LAT1{sup -/-} cells were deficient in L-type amino-acid transporting activity, although alternative-splice variant but not full-length mRNA of LAT1 was detected in these cells. LAT1{sup -/-} DT40 clones showed outstandingly slow growth in liquid culture and decreased colony-formation capacity in soft agar compared with wild-type DT40 cells. Cell-cycle analyses indicated that LAT1{sup -/-} DT40 clones have prolonged cell-cycle phases compared with wild-type or LAT1{sup +/-} DT40 cells. Knockdown of human LAT1 by small interfering RNAs resulted in marked in vitro cell-growth inhibition of human cancer cells, and in vivo tumor growth of HeLa cells in athymic mice was significantly inhibited by anti-human LAT1 mAb. All these results indicate essential roles of LAT1 in the cell proliferation and occurrence of malignant phenotypes and that LAT1 is a promising candidate as a molecular target of human cancer therapy.

  14. Oncogenicity of L-type amino-acid transporter 1 (LAT1) revealed by targeted gene disruption in chicken DT40 cells: LAT1 is a promising molecular target for human cancer therapy

    International Nuclear Information System (INIS)

    Ohkawa, Mayumi; Ohno, Yoshiya; Masuko, Kazue; Takeuchi, Akiko; Suda, Kentaro; Kubo, Akihiro; Kawahara, Rieko; Okazaki, Shogo; Tanaka, Toshiyuki; Saya, Hideyuki; Seki, Masayuki; Enomoto, Takemi; Yagi, Hideki; Hashimoto, Yoshiyuki; Masuko, Takashi

    2011-01-01

    Highlights: → We established LAT1 amino-acid transporter-disrupted DT40 cells. → LAT1-disrupted cells showed slow growth and lost the oncogenicity. → siRNA and mAb inhibited human tumor growth in vitro and in vivo. → LAT1 is a promising target molecule for cancer therapy. -- Abstract: L-type amino-acid transporter 1 (LAT1) is the first identified light chain of CD98 molecule, disulfide-linked to a heavy chain of CD98. Following cDNA cloning of chicken full-length LAT1, we have constructed targeting vectors for the disruption of chicken LAT1 gene from genomic DNA of chicken LAT1 consisting of 5.4 kb. We established five homozygous LAT1-disrupted (LAT1 -/- ) cell clones, derived from a heterozygous LAT1 +/- clone of DT40 chicken B cell line. Reactivity of anti-chicken CD98hc monoclonal antibody (mAb) with LAT1 -/- DT40 cells was markedly decreased compared with that of wild-type DT40 cells. All LAT1 -/- cells were deficient in L-type amino-acid transporting activity, although alternative-splice variant but not full-length mRNA of LAT1 was detected in these cells. LAT1 -/- DT40 clones showed outstandingly slow growth in liquid culture and decreased colony-formation capacity in soft agar compared with wild-type DT40 cells. Cell-cycle analyses indicated that LAT1 -/- DT40 clones have prolonged cell-cycle phases compared with wild-type or LAT1 +/- DT40 cells. Knockdown of human LAT1 by small interfering RNAs resulted in marked in vitro cell-growth inhibition of human cancer cells, and in vivo tumor growth of HeLa cells in athymic mice was significantly inhibited by anti-human LAT1 mAb. All these results indicate essential roles of LAT1 in the cell proliferation and occurrence of malignant phenotypes and that LAT1 is a promising candidate as a molecular target of human cancer therapy.

  15. Sobre los saberes culturales y el fenómeno "sentirse bien-sentirse mal" On cultural knowledge and the phenomenon "feel good-fell bad"

    OpenAIRE

    Virtudes Rodero Sánchez; Carme Vives Relats; Sagrario Acebedo Urdiales; Carme Ferré Grau

    2010-01-01

    El objetivo del presente estudio es identificar los saberes culturales inmersos en el fenómeno "sentirse-bien, sentirse mal", en diferentes situaciones de cuidado. Se elaboró un estudio cualitativo con un enfoque fenomenológico interpretativo, mediante el análisis de 18 narrativas a partir de entrevistas en profundidad realizadas por alumnas del Máster en Ciencias de la Enfermería en diferentes contextos de cuidados. Las categorías identificadas fueron: (1) Cronicidad y concepto de sentirse b...

  16. Irmandade afetada pela atrofia muscular peroneal de Charcot-Marie-Tooth com possível variante do fenômeno da antecipação

    Directory of Open Access Journals (Sweden)

    Aguinaldo Gonçalves

    1977-06-01

    Full Text Available Considerando-se a peculiaridade genética da atrofia peroneal de Charcot-Marie-Tooth, é feita a descrição clínica de família com três irmãos afetados, com idade de aparecimento progressivamente antecipada, refletindo possível variante do fenômeno da antecipação, condição inusitada na literatura, não só para esta doença, mas também, de modo geral, em Genética Humana.

  17. Evaluation of 54Fe(n,2n)53m+gFe reaction cross sections for high energy dosimetry applications

    International Nuclear Information System (INIS)

    Zolotarev, K.I.; Pashchenko, A.B.

    2001-01-01

    The new evaluation of excitation function for the high energy threshold 54 Fe(n,2n) 53m+g Fe dosimetry reaction in the energy range from the threshold to 20 MeV is briefly described. The cross section uncertainties and the covariance matrix were estimated simultaneously from the analysis. The adopted curve is compared to the available processed experimental data and the existing FEI-93, ENDF/B-VI and JENDL-3.2 evaluations. The ENDF-6 formatted data file is available from the Web site of the Russian Nuclear Data Center (RNDC) online (http://www.rndc.ippe.obninsk.ru). (author)

  18. Caracterização fenólica das uvas 'Alicante' e 'Syrah' cultivadas em safra fora de época

    Directory