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Sample records for acid pdb entries

  1. PDB2Graph: A toolbox for identifying critical amino acids map in proteins based on graph theory.

    Science.gov (United States)

    Niknam, Niloofar; Khakzad, Hamed; Arab, Seyed Shahriar; Naderi-Manesh, Hossein

    2016-05-01

    The integrative and cooperative nature of protein structure involves the assessment of topological and global features of constituent parts. Network concept takes complete advantage of both of these properties in the analysis concomitantly. High compatibility to structural concepts or physicochemical properties in addition to exploiting a remarkable simplification in the system has made network an ideal tool to explore biological systems. There are numerous examples in which different protein structural and functional characteristics have been clarified by the network approach. Here, we present an interactive and user-friendly Matlab-based toolbox, PDB2Graph, devoted to protein structure network construction, visualization, and analysis. Moreover, PDB2Graph is an appropriate tool for identifying critical nodes involved in protein structural robustness and function based on centrality indices. It maps critical amino acids in protein networks and can greatly aid structural biologists in selecting proper amino acid candidates for manipulating protein structures in a more reasonable and rational manner. To introduce the capability and efficiency of PDB2Graph in detail, the structural modification of Calmodulin through allosteric binding of Ca(2+) is considered. In addition, a mutational analysis for three well-identified model proteins including Phage T4 lysozyme, Barnase and Ribonuclease HI, was performed to inspect the influence of mutating important central residues on protein activity.

  2. The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries.

    NARCIS (Netherlands)

    Doreleijers, J.F.; Vranken, W.F.; Schulte, C.; Lin, J.; Wedell, J.R.; Penkett, C.J.; Vuister, G.W.; Vriend, G.; Markley, J.L.; Ulrich, E.L.

    2009-01-01

    Several pilot experiments have indicated that improvements in older NMR structures can be expected by applying modern software and new protocols (Nabuurs et al. in Proteins 55:483-186, 2004; Nederveen et al. in Proteins 59:662-672, 2005; Saccenti and Rosato in J Biomol NMR 40:251-261, 2008). A recen

  3. pdb-care (PDB CArbohydrate REsidue check: a program to support annotation of complex carbohydrate structures in PDB files

    Directory of Open Access Journals (Sweden)

    von der Lieth Claus-W

    2004-06-01

    Full Text Available Abstract Background Carbohydrates are involved in a variety of fundamental biological processes and pathological situations. They therefore have a large pharmaceutical and diagnostic potential. Knowledge of the 3D structure of glycans is a prerequisite for a complete understanding of their biological functions. The largest source of biomolecular 3D structures is the Protein Data Bank. However, about 30% of all 1663 PDB entries (version September 2003 containing carbohydrates comprise errors in glycan description. Unfortunately, no software is currently available which aligns the 3D information with the reported assignments. It is the aim of this work to fill this gap. Results The pdb-care program http://www.glycosciences.de/tools/pdb-care/ is able to identify and assign carbohydrate structures using only atom types and their 3D atom coordinates given in PDB-files. Looking up a translation table where systematic names and the respective PDB residue codes are listed, both assignments are compared and inconsistencies are reported. Additionally, the reliability of reported and calculated connectivities for molecules listed within the HETATOM records is checked and unusual values are reported. Conclusion Frequent use of pdb-care will help to improve the quality of carbohydrate data contained in the PDB. Automatic assignment of carbohydrate structures contained in PDB entries will enable the cross-linking of glycobiology resources with genomic and proteomic data collections.

  4. A series of PDB-related databanks for everyday needs

    NARCIS (Netherlands)

    Touw, W.G.; Baakman, C.A.B.; Black, J.; Beek, T.A. van; Krieger, E.; Joosten, R.P.; Vriend, G.

    2015-01-01

    We present a series of databanks (http://swift.cmbi.ru.nl/gv/facilities/) that hold information that is computationally derived from Protein Data Bank (PDB) entries and that might augment macromolecular structure studies. These derived databanks run parallel to the PDB, i.e. they have one entry per

  5. Protein Data Bank (PDB)

    Data.gov (United States)

    U.S. Department of Health & Human Services — The Protein Data Bank (PDB) archive is the single worldwide repository of information about the 3D structures of large biological molecules, including proteins and...

  6. Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.

    Science.gov (United States)

    Burley, Stephen K; Berman, Helen M; Kleywegt, Gerard J; Markley, John L; Nakamura, Haruki; Velankar, Sameer

    2017-01-01

    The Protein Data Bank (PDB)--the single global repository of experimentally determined 3D structures of biological macromolecules and their complexes--was established in 1971, becoming the first open-access digital resource in the biological sciences. The PDB archive currently houses ~130,000 entries (May 2017). It is managed by the Worldwide Protein Data Bank organization (wwPDB; wwpdb.org), which includes the RCSB Protein Data Bank (RCSB PDB; rcsb.org), the Protein Data Bank Japan (PDBj; pdbj.org), the Protein Data Bank in Europe (PDBe; pdbe.org), and BioMagResBank (BMRB; www.bmrb.wisc.edu). The four wwPDB partners operate a unified global software system that enforces community-agreed data standards and supports data Deposition, Biocuration, and Validation of ~11,000 new PDB entries annually (deposit.wwpdb.org). The RCSB PDB currently acts as the archive keeper, ensuring disaster recovery of PDB data and coordinating weekly updates. wwPDB partners disseminate the same archival data from multiple FTP sites, while operating complementary websites that provide their own views of PDB data with selected value-added information and links to related data resources. At present, the PDB archives experimental data, associated metadata, and 3D-atomic level structural models derived from three well-established methods: crystallography, nuclear magnetic resonance spectroscopy (NMR), and electron microscopy (3DEM). wwPDB partners are working closely with experts in related experimental areas (small-angle scattering, chemical cross-linking/mass spectrometry, Forster energy resonance transfer or FRET, etc.) to establish a federation of data resources that will support sustainable archiving and validation of 3D structural models and experimental data derived from integrative or hybrid methods.

  7. Mirrors in the PDB: left-handed α-turns guide design with D-amino acids

    Directory of Open Access Journals (Sweden)

    Nanda Vikas

    2009-09-01

    Full Text Available Abstract Background Incorporating variable amino acid stereochemistry in molecular design has the potential to improve existing protein stability and create new topologies inaccessible to homochiral molecules. The Protein Data Bank has been a reliable, rich source of information on molecular interactions and their role in protein stability and structure. D-amino acids rarely occur naturally, making it difficult to infer general rules for how they would be tolerated in proteins through an analysis of existing protein structures. However, protein elements containing short left-handed turns and helices turn out to contain useful information. Molecular mechanisms used in proteins to stabilize left-handed elements by L-amino acids are structurally enantiomeric to potential synthetic strategies for stabilizing right-handed elements with D-amino acids. Results Propensities for amino acids to occur in contiguous αL helices correlate with published thermodynamic scales for incorporation of D-amino acids into αR helices. Two backbone rules for terminating a left-handed helix are found: an αR conformation is disfavored at the amino terminus, and a βR conformation is disfavored at the carboxy terminus. Helix capping sidechain-backbone interactions are found which are unique to αL helices including an elevated propensity for L-Asn, and L-Thr at the amino terminus and L-Gln, L-Thr and L-Ser at the carboxy terminus. Conclusion By examining left-handed α-turns containing L-amino acids, new interaction motifs for incorporating D-amino acids into right-handed α-helices are identified. These will provide a basis for de novo design of novel heterochiral protein folds.

  8. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.

    Science.gov (United States)

    Adams, Paul D; Aertgeerts, Kathleen; Bauer, Cary; Bell, Jeffrey A; Berman, Helen M; Bhat, Talapady N; Blaney, Jeff M; Bolton, Evan; Bricogne, Gerard; Brown, David; Burley, Stephen K; Case, David A; Clark, Kirk L; Darden, Tom; Emsley, Paul; Feher, Victoria A; Feng, Zukang; Groom, Colin R; Harris, Seth F; Hendle, Jorg; Holder, Thomas; Joachimiak, Andrzej; Kleywegt, Gerard J; Krojer, Tobias; Marcotrigiano, Joseph; Mark, Alan E; Markley, John L; Miller, Matthew; Minor, Wladek; Montelione, Gaetano T; Murshudov, Garib; Nakagawa, Atsushi; Nakamura, Haruki; Nicholls, Anthony; Nicklaus, Marc; Nolte, Robert T; Padyana, Anil K; Peishoff, Catherine E; Pieniazek, Susan; Read, Randy J; Shao, Chenghua; Sheriff, Steven; Smart, Oliver; Soisson, Stephen; Spurlino, John; Stouch, Terry; Svobodova, Radka; Tempel, Wolfram; Terwilliger, Thomas C; Tronrud, Dale; Velankar, Sameer; Ward, Suzanna C; Warren, Gregory L; Westbrook, John D; Williams, Pamela; Yang, Huanwang; Young, Jasmine

    2016-04-05

    Crystallographic studies of ligands bound to biological macromolecules (proteins and nucleic acids) represent an important source of information concerning drug-target interactions, providing atomic level insights into the physical chemistry of complex formation between macromolecules and ligands. Of the more than 115,000 entries extant in the Protein Data Bank (PDB) archive, ∼75% include at least one non-polymeric ligand. Ligand geometrical and stereochemical quality, the suitability of ligand models for in silico drug discovery and design, and the goodness-of-fit of ligand models to electron-density maps vary widely across the archive. We describe the proceedings and conclusions from the first Worldwide PDB/Cambridge Crystallographic Data Center/Drug Design Data Resource (wwPDB/CCDC/D3R) Ligand Validation Workshop held at the Research Collaboratory for Structural Bioinformatics at Rutgers University on July 30-31, 2015. Experts in protein crystallography from academe and industry came together with non-profit and for-profit software providers for crystallography and with experts in computational chemistry and data archiving to discuss and make recommendations on best practices, as framed by a series of questions central to structural studies of macromolecule-ligand complexes. What data concerning bound ligands should be archived in the PDB? How should the ligands be best represented? How should structural models of macromolecule-ligand complexes be validated? What supplementary information should accompany publications of structural studies of biological macromolecules? Consensus recommendations on best practices developed in response to each of these questions are provided, together with some details regarding implementation. Important issues addressed but not resolved at the workshop are also enumerated. Copyright © 2016 Elsevier Ltd. All rights reserved.

  9. Widespread occurrence of the tfd-II genes in soil bacteria revealed by nucleotide sequence analysis of 2,4-dichlorophenoxyacetic acid degradative plasmids pDB1 and p712.

    Science.gov (United States)

    Kim, Dong-Uk; Kim, Min-Sun; Lim, Jong-Sung; Ka, Jong-Ok

    2013-05-01

    Variovorax sp. strain DB1 and Pseudomonas pickettii strain 712 are 2,4-dicholorophenoxy-acetic acid (2,4-D)-degrading bacteria, which were isolated from agricultural soils in Republic of Korea and USA, respectively. Each strain harbors a 2,4-D degradative plasmid and is able to utilize 2,4-D as the sole source of carbon for its growth. The 2,4-D degradative plasmid pDB1 of strain DB1 consisted of a 65,269-bp circular molecule with a G+C content of 66.23% and had 68 ORFs. The 2,4-D degradative plasmid p712 of strain 712 was composed of a 62,798-bp circular molecule with a 62.11% G+C content and had 62 ORFs. The plasmids pDB1 and p712 share significantly homologous 2,4-D degradative genes with high similarity to the tfdR, tfdB-II, tfdC-II, tfdD-II, tfdE-II, tfdF-II, tfdK and tfdA genes of plasmid pJP4 of Alcaligenes eutrophus isolated from Australia. In a phylogenetic analysis with trfA, traL, and trbA genes, pDB1 belonged to IncP-1β with pJP4, while p712 belonged to IncP-1ε with pKJK5 and pEMT3. The results indicated that, in spite of the differences in their backbone regions, the 2,4-D catabolic genes of the two plasmids were closely related and also related to the well-known 2,4-D degradative plasmid pJP4 even though all were isolated from different geographic regions. Other similarities in the genetic organization and the presence of IS1071 suggested that these catabolic genes may be on a transposable element, leading to widespread occurrence in soil bacteria. Copyright © 2013 Elsevier Inc. All rights reserved.

  10. NMR structure calculation for all small molecule ligands and non-standard residues from the PDB Chemical Component Dictionary

    Energy Technology Data Exchange (ETDEWEB)

    Yilmaz, Emel Maden; Güntert, Peter, E-mail: guentert@em.uni-frankfurt.de [Goethe University Frankfurt am Main, Center for Biomolecular Magnetic Resonance, Institute of Biophysical Chemistry (Germany)

    2015-09-15

    An algorithm, CYLIB, is presented for converting molecular topology descriptions from the PDB Chemical Component Dictionary into CYANA residue library entries. The CYANA structure calculation algorithm uses torsion angle molecular dynamics for the efficient computation of three-dimensional structures from NMR-derived restraints. For this, the molecules have to be represented in torsion angle space with rotations around covalent single bonds as the only degrees of freedom. The molecule must be given a tree structure of torsion angles connecting rigid units composed of one or several atoms with fixed relative positions. Setting up CYANA residue library entries therefore involves, besides straightforward format conversion, the non-trivial step of defining a suitable tree structure of torsion angles, and to re-order the atoms in a way that is compatible with this tree structure. This can be done manually for small numbers of ligands but the process is time-consuming and error-prone. An automated method is necessary in order to handle the large number of different potential ligand molecules to be studied in drug design projects. Here, we present an algorithm for this purpose, and show that CYANA structure calculations can be performed with almost all small molecule ligands and non-standard amino acid residues in the PDB Chemical Component Dictionary.

  11. Reading PDB: perception of molecules from 3D atomic coordinates.

    Science.gov (United States)

    Urbaczek, Sascha; Kolodzik, Adrian; Groth, Inken; Heuser, Stefan; Rarey, Matthias

    2013-01-28

    The analysis of small molecule crystal structures is a common way to gather valuable information for drug development. The necessary structural data is usually provided in specific file formats containing only element identities and three-dimensional atomic coordinates as reliable chemical information. Consequently, the automated perception of molecular structures from atomic coordinates has become a standard task in cheminformatics. The molecules generated by such methods must be both chemically valid and reasonable to provide a reliable basis for subsequent calculations. This can be a difficult task since the provided coordinates may deviate from ideal molecular geometries due to experimental uncertainties or low resolution. Additionally, the quality of the input data often differs significantly thus making it difficult to distinguish between actual structural features and mere geometric distortions. We present a method for the generation of molecular structures from atomic coordinates based on the recently published NAOMI model. By making use of this consistent chemical description, our method is able to generate reliable results even with input data of low quality. Molecules from 363 Protein Data Bank (PDB) entries could be perceived with a success rate of 98%, a result which could not be achieved with previously described methods. The robustness of our approach has been assessed by processing all small molecules from the PDB and comparing them to reference structures. The complete data set can be processed in less than 3 min, thus showing that our approach is suitable for large scale applications.

  12. Proteins of Unknown Function in the Protein Data Bank (PDB: An Inventory of True Uncharacterized Proteins and Computational Tools for Their Analysis

    Directory of Open Access Journals (Sweden)

    Nurul Nadzirin

    2012-10-01

    Full Text Available Proteins of uncharacterized functions form a large part of many of the currently available biological databases and this situation exists even in the Protein Data Bank (PDB. Our analysis of recent PDB data revealed that only 42.53% of PDB entries (1084 coordinate files that were categorized under “unknown function” are true examples of proteins of unknown function at this point in time. The remainder 1465 entries also annotated as such appear to be able to have their annotations re-assessed, based on the availability of direct functional characterization experiments for the protein itself, or for homologous sequences or structures thus enabling computational function inference.

  13. PDB: CBRC-RMAC-04-0031 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=95%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:385-812(Identity=95%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:385-812(Identity=95%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:385-812(Identity=9...5%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:385-812(Identity=95%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:385-812(Identity=95%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...385-812(Identity=95%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:385-812(Identity=95%) PDB:3DCO Chain:B (EM Resolution

  14. PDB: CBRC-PVAM-01-1491 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=90%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:337-792(Identity=90%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:337-792(Identity=90%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:337-792(Identity=9...0%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:337-792(Identity=90%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:337-792(Identity=90%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...337-792(Identity=89%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:337-792(Identity=89%) PDB:3DCO Chain:B (EM Resolution

  15. PDB: CBRC-MDOM-01-0507 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=93%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:324-795(Identity=93%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:324-795(Identity=93%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:324-795(Identity=9...3%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:324-795(Identity=93%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:324-795(Identity=93%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...324-795(Identity=92%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:324-795(Identity=92%) PDB:3DCO Chain:B (EM Resolution

  16. PDB: CBRC-OANA-01-2184 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=91%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:381-814(Identity=91%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:381-814(Identity=91%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:381-814(Identity=9...1%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:381-814(Identity=91%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:381-814(Identity=91%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...381-814(Identity=90%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:381-814(Identity=90%) PDB:3DCO Chain:B (EM Resolution

  17. PDB: CBRC-XTRO-01-3362 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=84%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:362-748(Identity=84%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:362-748(Identity=84%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:362-748(Identity=8...4%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:362-748(Identity=84%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:362-748(Identity=84%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...362-750(Identity=84%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:362-750(Identity=84%) PDB:3DCO Chain:B (EM Resolution

  18. PDB: CBRC-CFAM-05-0065 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=92%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:383-810(Identity=92%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:383-810(Identity=92%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:383-810(Identity=9...2%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:383-810(Identity=92%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:383-810(Identity=92%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...383-810(Identity=91%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:383-810(Identity=91%) PDB:3DCO Chain:B (EM Resolution

  19. PDB: CBRC-BTAU-01-1602 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=90%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:346-794(Identity=90%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:346-794(Identity=90%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:346-794(Identity=9...0%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:346-794(Identity=90%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:346-794(Identity=90%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...346-794(Identity=89%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:346-794(Identity=89%) PDB:3DCO Chain:B (EM Resolution

  20. PDB: CBRC-MDOM-02-0275 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=96%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:374-798(Identity=96%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:374-798(Identity=96%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:374-798(Identity=9...6%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:374-798(Identity=96%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:374-798(Identity=96%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...374-798(Identity=95%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:374-798(Identity=95%) PDB:3DCO Chain:B (EM Resolution

  1. PDB: CBRC-FCAT-01-1094 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=92%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:394-820(Identity=92%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:394-820(Identity=92%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:394-820(Identity=9...2%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:394-820(Identity=92%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:394-820(Identity=92%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...394-820(Identity=92%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:394-820(Identity=92%) PDB:3DCO Chain:B (EM Resolution

  2. PDB: CBRC-AGAM-03-0006 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=90%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:493-923(Identity=90%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:493-923(Identity=90%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:493-923(Identity=9...0%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:493-923(Identity=90%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:493-923(Identity=90%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...493-923(Identity=89%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:493-923(Identity=89%) PDB:3DCO Chain:B (EM Resolution

  3. PDB: CBRC-TGUT-37-0329 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=87%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:577-967(Identity=87%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:577-967(Identity=87%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:577-967(Identity=8...7%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:577-967(Identity=87%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:577-967(Identity=87%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...577-967(Identity=87%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:577-967(Identity=87%) PDB:3DCO Chain:B (EM Resolution

  4. PDB: CBRC-PABE-07-0039 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=96%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:377-801(Identity=96%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:377-801(Identity=96%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:377-801(Identity=9...6%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:377-801(Identity=96%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:377-801(Identity=96%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...377-801(Identity=95%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:377-801(Identity=95%) PDB:3DCO Chain:B (EM Resolution

  5. PDB: CBRC-RNOR-19-0067 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available (Identity=92%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:352-778(Identity=92%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:352-778(Identity=92%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:352-778(Identity=9...2%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:352-778(Identity=92%) PDB:1SA1 Chain:B (X-ray Resoluti...on=4.20),Region:352-778(Identity=92%) PDB:2WBE Chain:B (EM Resolution=9.40),Region:...352-778(Identity=91%) PDB:1Z2B Chain:B (X-ray Resolution=4.10),Region:352-778(Identity=91%) PDB:3DCO Chain:B (EM Resolution

  6. PDB: CBRC-CJAC-01-0391 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available on:421-804(Identity=82%) PDB:1FFX Chain:B (X-ray Resolution=3.95),Region:421-804(Identity=82%) PDB:1IA0 Chain:B (EM Resolution...=15.00),Region:421-804(Identity=82%) PDB:1JFF Chain:B (EM Resolution=3.50),Region:421-804(...Identity=82%) PDB:1SA0 Chain:B (X-ray Resolution=3.58),Region:421-804(Identity=82...%) PDB:1SA1 Chain:B (X-ray Resolution=4.20),Region:421-788(Identity=82%) PDB:1TUB Chain:B (EM Resolution=3.7...0),Region:421-788(Identity=82%) PDB:1TVK Chain:B (EM Resolution=2.89),Region:421-804(Identity=82%) PDB:2WBE Chain:B (EM Resolution

  7. PDB: CBRC-BTAU-01-1941 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-BTAU-01-1941 1HLL,1HO9,1HOD,1HOF, Region:118-149(Identity=100%) PDB:1HLL Chain...:A (NMR),Region:118-149(Identity=100%) PDB:1HO9 Chain:A (NMR),Region:118-149(Identity=100%) PDB:1HOD Chain:A (NMR),Region:118-149(Identity=100%) PDB:1HOF Chain:A (NMR), ...

  8. PDB: CBRC-MDOM-01-0096 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MDOM-01-0096 1HLL,1HO9,1HOD,1HOF, Region:132-163(Identity=100%) PDB:1HLL Chain...:A (NMR),Region:132-163(Identity=100%) PDB:1HO9 Chain:A (NMR),Region:132-163(Identity=100%) PDB:1HOD Chain:A (NMR),Region:132-163(Identity=100%) PDB:1HOF Chain:A (NMR), ...

  9. PDB: CBRC-MLUC-01-1163 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MLUC-01-1163 1HLL,1HO9,1HOD,1HOF, Region:118-149(Identity=100%) PDB:1HLL Chain...:A (NMR),Region:118-149(Identity=100%) PDB:1HO9 Chain:A (NMR),Region:118-149(Identity=100%) PDB:1HOD Chain:A (NMR),Region:118-149(Identity=100%) PDB:1HOF Chain:A (NMR), ...

  10. PDB: CBRC-OPRI-01-0544 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-OPRI-01-0544 1HLL,1HO9,1HOD,1HOF, Region:118-149(Identity=93%) PDB:1HLL Chain:...A (NMR),Region:118-149(Identity=93%) PDB:1HO9 Chain:A (NMR),Region:118-149(Identity=93%) PDB:1HOD Chain:A (NMR),Region:118-149(Identity=93%) PDB:1HOF Chain:A (NMR), ...

  11. PDB: CBRC-BTAU-01-2619 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-BTAU-01-2619 1U34,2JNC,2JND, Region:43-137(Identity=85%) PDB:1U34 Chain:A (NMR),Region:43-137(Identity...=85%) PDB:2JNC Chain:A (NMR),Region:43-137(Identity=85%) PDB:2JND Chain:A (NMR), ...

  12. PDB: CBRC-PABE-08-0030 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PABE-08-0030 1U34,2JNC,2JND, Region:45-139(Identity=85%) PDB:1U34 Chain:A (NMR),Region:45-139(Identity...=85%) PDB:2JNC Chain:A (NMR),Region:45-139(Identity=85%) PDB:2JND Chain:A (NMR), ...

  13. PDB: CBRC-PCAP-01-1657 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PCAP-01-1657 1U34,2JNC,2JND, Region:43-137(Identity=80%) PDB:1U34 Chain:A (NMR),Region:43-137(Identity...=80%) PDB:2JNC Chain:A (NMR),Region:43-137(Identity=80%) PDB:2JND Chain:A (NMR), ...

  14. PDB: CBRC-ACAR-01-1016 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 2E4H, Region:331-779(Identity=95%) PDB:3E22 Chain:A (X-ray Resolution=3.80),Region:331-779(Identity=97%) PDB:3DCO Chain:A (EM Resolut...ion=1.90),Region:331-779(Identity=97%) PDB:3EDL Chain:A (EM Resolution=28.00),Regio...n:331-779(Identity=96%) PDB:1FFX Chain:A (X-ray Resolution=3.95),Region:331-779(I...dentity=96%) PDB:1IA0 Chain:A (EM Resolution=15.00),Region:331-779(Identity=96%) PDB:1JFF Chain:A (EM Resolution...=3.50),Region:331-779(Identity=96%) PDB:1SA0 Chain:A (X-ray Resolution=3.58),Region:331-779(Identity=96%

  15. PDB: CBRC-TNIG-22-0159 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 2WBE,3DU7,2E4H, Region:346-770(Identity=93%) PDB:3E22 Chain:A (X-ray Resolution=3.80),Region:346-770(Identit...y=95%) PDB:3DCO Chain:A (EM Resolution=1.90),Region:346-770(Identity=95%) PDB:3EDL Chain:A (EM Resolution=28....00),Region:346-770(Identity=94%) PDB:1FFX Chain:A (X-ray Resolution=3.95),Region...:346-770(Identity=94%) PDB:1IA0 Chain:A (EM Resolution=15.00),Region:346-770(Identity=94%) PDB:1JFF Chain:A (EM Resolution...=3.50),Region:346-770(Identity=94%) PDB:1SA0 Chain:A (X-ray Resolution=3.58),Region:346-770(Id

  16. PDB: CBRC-FRUB-02-0211 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 3E22, Region:369-811(Identity=95%) PDB:1Z2B Chain:A (X-ray Resolution=4.10),Region:369-814(Identity=95%) PDB:3DCO Chain:A (EM Resolut...ion=1.90),Region:369-814(Identity=95%) PDB:3EDL Chain:A (EM Resolution=28.00),Regio...n:369-814(Identity=94%) PDB:1FFX Chain:A (X-ray Resolution=3.95),Region:369-814(I...dentity=94%) PDB:1IA0 Chain:A (EM Resolution=15.00),Region:369-814(Identity=94%) PDB:1JFF Chain:A (EM Resolution...=3.50),Region:369-814(Identity=94%) PDB:1SA0 Chain:A (X-ray Resolution=3.58),Region:369-814(Identity=94%

  17. PDB: CBRC-FRUB-02-0776 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 2E4H, Region:1326-1773(Identity=90%) PDB:2WBE Chain:A (EM Resolution=9.40),Region:1326-1773(Identity=91%) PDB:3DCO Chain:A (EM Resolu...tion=1.90),Region:1326-1773(Identity=91%) PDB:3EDL Chain:A (EM Resolution=28.00),Re...gion:1326-1773(Identity=91%) PDB:3DU7 Chain:A (X-ray Resolution=4.10),Region:1326...-1773(Identity=91%) PDB:3E22 Chain:A (X-ray Resolution=3.80),Region:1326-1773(Identity=90%) PDB:1FFX Chain:A (X-ray Resolution...=3.95),Region:1326-1773(Identity=90%) PDB:1IA0 Chain:A (EM Resolution=15.00),Region:1326-1

  18. PDB: CBRC-TGUT-37-0154 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 2E4H, Region:400-819(Identity=93%) PDB:3DU7 Chain:A (X-ray Resolution=4.10),Region:400-819(Identity=93%) PDB...:3E22 Chain:A (X-ray Resolution=3.80),Region:400-819(Identity=93%) PDB:2WBE Chain:A (EM Resolution=9.40),Reg...ion:400-819(Identity=93%) PDB:3DCO Chain:A (EM Resolution=1.90),Region:400-819(Id...entity=93%) PDB:3EDL Chain:A (EM Resolution=28.00),Region:400-819(Identity=93%) PDB:1FFX Chain:A (X-ray Resolution...=3.95),Region:400-819(Identity=93%) PDB:1IA0 Chain:A (EM Resolution=15.00),Region:400-819(Identity=93%

  19. PDB: CBRC-DRER-10-0153 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 3DU7,3E22, Region:383-831(Identity=93%) PDB:3DCO Chain:A (EM Resolution=1.90),Region:383-831(Identity=93%) PDB:3EDL Chain:A (EM Resol...ution=28.00),Region:383-831(Identity=93%) PDB:1FFX Chain:A (X-ray Resolution=3.95),...Region:383-831(Identity=93%) PDB:1IA0 Chain:A (EM Resolution=15.00),Region:383-83...1(Identity=93%) PDB:1JFF Chain:A (EM Resolution=3.50),Region:383-831(Identity=93%) PDB:1SA0 Chain:A (X-ray Resolution...=3.58),Region:383-831(Identity=93%) PDB:1SA1 Chain:A (X-ray Resolution=4.20),Region:383-821(Identit

  20. PDB: CBRC-PHAM-01-0359 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available ion=3.10),Region:38-64(Identity=100%) PDB:1NRO Chain:R (X-ray Resolution=3.10),Regi...on:38-60(Identity=100%) PDB:1NRP Chain:R (X-ray Resolution=3.00),Region:40-60(Identity=100%) PDB:1NRQ Chain:R (X-ray Resolution...=3.50),Region:43-60(Identity=100%) PDB:1NRR Chain:R (X-ray Resolution...=2.40),Region:49-57(Identity=100%) PDB:3BEF Chain:C (X-ray Resolution=2.20), ... ...CBRC-PHAM-01-0359 1NRN,1NRO,1NRP,1NRQ,1NRR,3BEF, Region:38-60(Identity=100%) PDB:1NRN Chain:R (X-ray Resolut

  1. PDB: CBRC-PABE-06-0012 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available ion=3.10),Region:38-64(Identity=100%) PDB:1NRO Chain:R (X-ray Resolution=3.10),Regi...on:38-60(Identity=100%) PDB:1NRP Chain:R (X-ray Resolution=3.00),Region:40-60(Identity=100%) PDB:1NRQ Chain:R (X-ray Resolution...=3.50),Region:43-60(Identity=100%) PDB:1NRR Chain:R (X-ray Resolution...=2.40),Region:49-57(Identity=100%) PDB:3BEF Chain:C (X-ray Resolution=2.20), ... ...CBRC-PABE-06-0012 1NRN,1NRO,1NRP,1NRQ,1NRR,3BEF, Region:38-60(Identity=100%) PDB:1NRN Chain:R (X-ray Resolut

  2. PDB: CBRC-PTRO-06-0019 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available ion=3.10),Region:38-64(Identity=100%) PDB:1NRO Chain:R (X-ray Resolution=3.10),Regi...on:38-60(Identity=100%) PDB:1NRP Chain:R (X-ray Resolution=3.00),Region:40-60(Identity=100%) PDB:1NRQ Chain:R (X-ray Resolution...=3.50),Region:43-60(Identity=100%) PDB:1NRR Chain:R (X-ray Resolution...=2.40),Region:49-57(Identity=100%) PDB:3BEF Chain:C (X-ray Resolution=2.20), ... ...CBRC-PTRO-06-0019 1NRN,1NRO,1NRP,1NRQ,1NRR,3BEF, Region:38-60(Identity=100%) PDB:1NRN Chain:R (X-ray Resolut

  3. PDB: CBRC-RMAC-06-0015 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available ion=3.10),Region:38-64(Identity=100%) PDB:1NRO Chain:R (X-ray Resolution=3.10),Regi...on:38-60(Identity=100%) PDB:1NRP Chain:R (X-ray Resolution=3.00),Region:40-60(Identity=100%) PDB:1NRQ Chain:R (X-ray Resolution...=3.50),Region:43-60(Identity=100%) PDB:1NRR Chain:R (X-ray Resolution...=2.40),Region:49-57(Identity=100%) PDB:3BEF Chain:C (X-ray Resolution=2.20), ... ...CBRC-RMAC-06-0015 1NRN,1NRO,1NRP,1NRQ,1NRR,3BEF, Region:38-60(Identity=100%) PDB:1NRN Chain:R (X-ray Resolut

  4. PDB: CBRC-PABE-06-0013 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available ion=3.10),Region:21-47(Identity=100%) PDB:1NRO Chain:R (X-ray Resolution=3.10),Regi...on:21-43(Identity=100%) PDB:1NRP Chain:R (X-ray Resolution=3.00),Region:23-43(Identity=100%) PDB:1NRQ Chain:R (X-ray Resolution...=3.50),Region:26-43(Identity=100%) PDB:1NRR Chain:R (X-ray Resolution...=2.40),Region:32-40(Identity=100%) PDB:3BEF Chain:C (X-ray Resolution=2.20), ... ...CBRC-PABE-06-0013 1NRN,1NRO,1NRP,1NRQ,1NRR,3BEF, Region:21-43(Identity=100%) PDB:1NRN Chain:R (X-ray Resolut

  5. PDB: CBRC-HSAP-05-0018 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available ion=3.10),Region:38-64(Identity=100%) PDB:1NRO Chain:R (X-ray Resolution=3.10),Regi...on:38-60(Identity=100%) PDB:1NRP Chain:R (X-ray Resolution=3.00),Region:40-60(Identity=100%) PDB:1NRQ Chain:R (X-ray Resolution...=3.50),Region:43-60(Identity=100%) PDB:1NRR Chain:R (X-ray Resolution...=2.40),Region:49-57(Identity=100%) PDB:3BEF Chain:C (X-ray Resolution=2.20), ... ...CBRC-HSAP-05-0018 1NRN,1NRO,1NRP,1NRQ,1NRR,3BEF, Region:38-60(Identity=100%) PDB:1NRN Chain:R (X-ray Resolut

  6. PDB: CBRC-TTRU-01-0897 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-TTRU-01-0897 1OF2,1OGT,3B3I, Region:408-416(Identity=100%) PDB:1OF2 Chain:C (X-ray Reso...lution=2.20),Region:408-416(Identity=100%) PDB:1OGT Chain:C (X-ray Resolution=1.47),Region:408-416(Identity=100%) PDB:3B3I Chain:C (X-ray Resolution=1.86), ...

  7. PDB: CBRC-GGOR-01-1356 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-GGOR-01-1356 1OF2,1OGT,3B3I, Region:417-425(Identity=100%) PDB:1OF2 Chain:C (X-ray Reso...lution=2.20),Region:417-425(Identity=100%) PDB:1OGT Chain:C (X-ray Resolution=1.47),Region:417-425(Identity=100%) PDB:3B3I Chain:C (X-ray Resolution=1.86), ...

  8. PDB: CBRC-PVAM-01-1208 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PVAM-01-1208 3EHS,3EHT,3EHU, Region:24-119(Identity=95%) PDB:3EHS Chain:A (X-ray Reso...lution=2.76),Region:24-119(Identity=95%) PDB:3EHT Chain:A (X-ray Resolution=3.40),Region:24-119(Identity=95%) PDB:3EHU Chain:A (X-ray Resolution=1.96), ...

  9. PDB: CBRC-MDOM-02-0161 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MDOM-02-0161 3EHS,3EHT,3EHU, Region:31-126(Identity=87%) PDB:3EHS Chain:A (X-ray Reso...lution=2.76),Region:31-126(Identity=87%) PDB:3EHT Chain:A (X-ray Resolution=3.40),Region:31-126(Identity=87%) PDB:3EHU Chain:A (X-ray Resolution=1.96), ...

  10. PDB: CBRC-GGOR-01-1460 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-GGOR-01-1460 3EHS,3EHT,3EHU, Region:22-118(Identity=85%) PDB:3EHS Chain:A (X-ray Resolution...=2.76),Region:22-118(Identity=85%) PDB:3EHT Chain:A (X-ray Resolution=3.40),Region:22-118(Identity=85%) PDB:3EHU Chain:A (X-ray Resolution=1.96), ...

  11. PDB: CBRC-RNOR-10-0233 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-RNOR-10-0233 3EHS,3EHT,3EHU, Region:26-121(Identity=95%) PDB:3EHS Chain:A (X-ray Resolution...=2.76),Region:26-121(Identity=95%) PDB:3EHT Chain:A (X-ray Resolution=3.40),Region:26-121(Identity=95%) PDB:3EHU Chain:A (X-ray Resolution=1.96), ...

  12. PDB: CBRC-OPRI-01-1523 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-OPRI-01-1523 1OF2,1OGT,3B3I, Region:401-409(Identity=100%) PDB:1OF2 Chain:C (X-ray Resolution...=2.20),Region:401-409(Identity=100%) PDB:1OGT Chain:C (X-ray Resolution=1.47),Region:401-409(Identity=100%) PDB:3B3I Chain:C (X-ray Resolution=1.86), ...

  13. PDB: CBRC-PABE-18-0028 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PABE-18-0028 3EHS,3EHT,3EHU, Region:36-131(Identity=100%) PDB:3EHS Chain:A (X-ray Resolution...=2.76),Region:36-131(Identity=100%) PDB:3EHT Chain:A (X-ray Resolution=3.40),Region:36-131(Identity=100%) PDB:3EHU Chain:A (X-ray Resolution=1.96), ...

  14. PDB: CBRC-PHAM-01-0319 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PHAM-01-0319 1OF2,1OGT,3B3I, Region:389-397(Identity=100%) PDB:1OF2 Chain:C (X-ray Resolution...=2.20),Region:389-397(Identity=100%) PDB:1OGT Chain:C (X-ray Resolution=1.47),Region:389-397(Identity=100%) PDB:3B3I Chain:C (X-ray Resolution=1.86), ...

  15. PDB: CBRC-MLUC-01-0880 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MLUC-01-0880 3EHS,3EHT,3EHU, Region:22-117(Identity=91%) PDB:3EHS Chain:A (X-ray Resolution...=2.76),Region:22-117(Identity=91%) PDB:3EHT Chain:A (X-ray Resolution=3.40),Region:22-117(Identity=91%) PDB:3EHU Chain:A (X-ray Resolution=1.96), ...

  16. PDB: CBRC-CFAM-23-0006 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CFAM-23-0006 1OF2,1OGT,3B3I, Region:402-410(Identity=100%) PDB:1OF2 Chain:C (X-ray Resolution...=2.20),Region:402-410(Identity=100%) PDB:1OGT Chain:C (X-ray Resolution=1.47),Region:402-410(Identity=100%) PDB:3B3I Chain:C (X-ray Resolution=1.86), ...

  17. PDB: CBRC-MMUS-09-0212 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MMUS-09-0212 1OF2,1OGT,3B3I, Region:402-410(Identity=100%) PDB:1OF2 Chain:C (X-ray Resolution...=2.20),Region:402-410(Identity=100%) PDB:1OGT Chain:C (X-ray Resolution=1.47),Region:402-410(Identity=100%) PDB:3B3I Chain:C (X-ray Resolution=1.86), ...

  18. PDB: CBRC-HSAP-05-0044 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-HSAP-05-0044 2R4R,2RH1,3D4S,2R4S, Region:1-365(Identity=99%) PDB:2R4R Chain:A (X-ray Resolution...=3.40),Region:1-365(Identity=99%) PDB:2RH1 Chain:A (X-ray Resolution=2.40),Region:1-365(Ide...ntity=99%) PDB:3D4S Chain:A (X-ray Resolution=2.80),Region:24-365(Identity=99%) PDB:2R4S Chain:A (X-ray Resolution=3.40), ...

  19. PDB: CBRC-PABE-06-0027 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PABE-06-0027 2R4R,2RH1,3D4S,2R4S, Region:126-492(Identity=98%) PDB:2R4R Chain:A (X-ray Resolution...=3.40),Region:126-492(Identity=98%) PDB:2RH1 Chain:A (X-ray Resolution=2.40),Region:126-4...92(Identity=98%) PDB:3D4S Chain:A (X-ray Resolution=2.80),Region:149-492(Identity=98%) PDB:2R4S Chain:A (X-ray Resolution=3.40), ...

  20. PDB: CBRC-RMAC-06-0031 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-RMAC-06-0031 2R4R,2RH1,3D4S,2R4S, Region:1-367(Identity=98%) PDB:2R4R Chain:A (X-ray Resolution...=3.40),Region:1-367(Identity=98%) PDB:2RH1 Chain:A (X-ray Resolution=2.40),Region:1-367(Ide...ntity=98%) PDB:3D4S Chain:A (X-ray Resolution=2.80),Region:24-367(Identity=97%) PDB:2R4S Chain:A (X-ray Resolution=3.40), ...

  1. PDB: CBRC-PTRO-06-0041 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PTRO-06-0041 2R4R,2RH1,3D4S,2R4S, Region:85-449(Identity=99%) PDB:2R4R Chain:A (X-ray Resolution...=3.40),Region:85-449(Identity=99%) PDB:2RH1 Chain:A (X-ray Resolution=2.40),Region:85-449(...Identity=99%) PDB:3D4S Chain:A (X-ray Resolution=2.80),Region:108-449(Identity=99%) PDB:2R4S Chain:A (X-ray Resolution=3.40), ...

  2. PDB: CBRC-CJAC-01-1334 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CJAC-01-1334 2R4R,2RH1,3D4S,2R4S, Region:32-398(Identity=96%) PDB:2R4R Chain:A (X-ray Resolution...=3.40),Region:32-398(Identity=96%) PDB:2RH1 Chain:A (X-ray Resolution=2.40),Region:32-398(...Identity=96%) PDB:3D4S Chain:A (X-ray Resolution=2.80),Region:55-398(Identity=96%) PDB:2R4S Chain:A (X-ray Resolution=3.40), ...

  3. Acid phosphatase 2 (ACP2) is required for membrane fusion during influenza virus entry

    Science.gov (United States)

    Lee, Jihye; Kim, Jinhee; Son, Kidong; d’Alexandry d’Orengiani, Anne-Laure Pham Humg; Min, Ji-Young

    2017-01-01

    Influenza viruses exploit host factors to successfully replicate in infected cells. Using small interfering RNA (siRNA) technology, we identified six human genes required for influenza A virus (IAV) replication. Here we focused on the role of acid phosphatase 2 (ACP2), as its knockdown showed the greatest inhibition of IAV replication. In IAV-infected cells, depletion of ACP2 resulted in a significant reduction in the expression of viral proteins and mRNA, and led to the attenuation of virus multi-cycle growth. ACP2 knockdown also decreased replication of seasonal influenza A and B viruses and avian IAVs of the H7 subtype. Interestingly, ACP2 depletion had no effect on the replication of Ebola or hepatitis C virus. Because ACP2 is known to be a lysosomal acid phosphatase, we assessed the role of ACP2 in influenza virus entry. While neither binding of the viral particle to the cell surface nor endosomal acidification was affected in ACP2-depleted cells, fusion of the endosomal and viral membranes was impaired. As a result, downstream steps in viral entry were blocked, including nucleocapsid uncoating and nuclear import of viral ribonucleoproteins. Our results established ACP2 as a necessary host factor for regulating the fusion step of influenza virus entry. PMID:28272419

  4. The crucial role of bile acids in the entry of porcine enteric calicivirus.

    Science.gov (United States)

    Shivanna, Vinay; Kim, Yunjeong; Chang, Kyeong-Ok

    2014-05-01

    Replication of porcine enteric calicivirus (PEC) in LLC-PK cells is dependent on the presence of bile acids in the medium. However, the mechanism of bile acid-dependent PEC replication is unknown. Understanding of bile acid-mediated PEC replication may provide insight into cultivating related human noroviruses, currently uncultivable, which are the major cause of viral gastroenteritis outbreaks in humans. Our results demonstrated that while uptake of PEC into the endosomes does not require bile acids, the presence of bile acids is critical for viral escape from the endosomes into cell cytoplasm to initiate viral replication. We also demonstrated that bile acid transporters including the sodium-taurocholate co-transporting polypeptide and the apical sodium-dependent bile acid transporter are important in exerting the effects of bile acids in PEC replication in cells. In summary, our results suggest that bile acids play a critical role in virus entry for successful replication. Copyright © 2014 Elsevier Inc. All rights reserved.

  5. PDB: CBRC-CFAM-19-0007 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CFAM-19-0007 2K03,2K04,2K05,3ODU,3OE0,3OE6,3OE8,3OE9, Region:1-39(Identity=81%...) PDB:2K03 Chain:B (NMR),Region:1-39(Identity=81%) PDB:2K04 Chain:B (NMR),Region:1-39(Identity=81%) PDB:2K05... Chain:B (NMR),Region:2-320(Identity=95%) PDB:3ODU Chain:A (X-ray Resolution=2.5),Region:2-320(Identity=95%)... PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:2-326(Identity=95%) PDB:3OE6 Chai...n:A (X-ray Resolution=3.2),Region:2-320(Identity=95%) PDB:3OE8 Chain:A (X-ray Resolution=3.1),Region:2-320(Identity=95%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  6. PDB: CBRC-VPAC-01-0675 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-VPAC-01-0675 3ODU,3OE0,3OE6,3OE8,3OE9, Region:8-326(Identity=91%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:8-326(Identity=91%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:8-332(...Identity=91%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:8-326(Identity=91%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:8-326(Identity=91%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  7. PDB: CBRC-CFAM-14-0054 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CFAM-14-0054 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-571(Identity=89%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-571(Identity=89%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-571(Identity=89%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-571(Identity=89%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-571(Identity=89%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  8. PDB: CBRC-TSYR-01-1259 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-TSYR-01-1259 3ODU,3OE0,3OE6,3OE8,3OE9, Region:1-300(Identity=88%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:1-300(Identity=88%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:1-306(...Identity=88%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:1-300(Identity=88%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:1-300(Identity=88%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  9. PDB: CBRC-MEUG-01-2373 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MEUG-01-2373 1EWK,1EWT,1EWV,1ISR,1ISS, Region:33-522(Identity=90%) PDB:1EWK Chain:A (X-ray Resolution...=2.20),Region:33-522(Identity=90%) PDB:1EWT Chain:A (X-ray Resolution=3.70),Region:33...-522(Identity=90%) PDB:1EWV Chain:A (X-ray Resolution=4.00),Region:33-522(Identity=90%) PDB:1ISR Chain:A (X-ray Resolution...=4.00),Region:33-522(Identity=90%) PDB:1ISS Chain:A (X-ray Resolution=3.30), ...

  10. PDB: CBRC-CJAC-01-1379 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CJAC-01-1379 3ODU,3OE0,3OE6,3OE8,3OE9, Region:8-323(Identity=97%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:8-323(Identity=97%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:8-329(...Identity=97%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:8-323(Identity=97%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:8-323(Identity=97%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  11. PDB: CBRC-RMAC-03-0043 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-RMAC-03-0043 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-575(Identity=96%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-575(Identity=96%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-575(Identity=96%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-575(Identity=96%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-575(Identity=96%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  12. PDB: CBRC-MLUC-01-1022 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MLUC-01-1022 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-572(Identity=87%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-572(Identity=87%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-572(Identity=87%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-572(Identity=87%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-572(Identity=87%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  13. PDB: CBRC-MEUG-01-0424 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MEUG-01-0424 3ODU,3OE0,3OE6,3OE8,3OE9, Region:13-321(Identity=83%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:13-321(Identity=83%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:13-3...27(Identity=83%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:13-321(Identity=83%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:13-321(Identity=83%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  14. PDB: CBRC-TGUT-05-0017 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-TGUT-05-0017 1EWK,1EWT,1EWV,1ISR,1ISS, Region:33-520(Identity=81%) PDB:1EWK Chain:A (X-ray Resolution...=2.20),Region:33-520(Identity=81%) PDB:1EWT Chain:A (X-ray Resolution=3.70),Region:33...-520(Identity=81%) PDB:1EWV Chain:A (X-ray Resolution=4.00),Region:33-520(Identity=81%) PDB:1ISR Chain:A (X-ray Resolution...=4.00),Region:33-520(Identity=81%) PDB:1ISS Chain:A (X-ray Resolution=3.30), ...

  15. PDB: CBRC-PABE-03-0008 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PABE-03-0008 3ODU,3OE0,3OE6,3OE8,3OE9, Region:8-324(Identity=99%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:8-324(Identity=99%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:8-330(...Identity=99%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:8-324(Identity=99%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:8-324(Identity=99%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  16. PDB: CBRC-PCAP-01-1190 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PCAP-01-1190 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:1-485(Identity=92%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:1-485(Identity=92%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:1-48...5(Identity=92%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:1-485(Identity=92%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:1-485(Identity=92%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  17. PDB: CBRC-RNOR-04-0019 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-RNOR-04-0019 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-575(Identity=100%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-575(Identity=100%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:...25-575(Identity=100%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-575(Identity=100%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-575(Identity=100%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  18. PDB: CBRC-GGOR-01-0300 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-GGOR-01-0300 3ODU,3OE0,3OE6,3OE8,3OE9, Region:8-271(Identity=98%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:8-271(Identity=98%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:8-271(...Identity=98%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:8-271(Identity=98%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:8-271(Identity=98%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  19. PDB: CBRC-MLUC-01-0762 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MLUC-01-0762 3ODU,3OE0,3OE6,3OE8,3OE9, Region:3-319(Identity=93%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:3-319(Identity=93%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:3-325(...Identity=93%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:3-319(Identity=93%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:3-319(Identity=93%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  20. PDB: CBRC-BTAU-01-1639 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-BTAU-01-1639 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-575(Identity=95%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-575(Identity=95%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-575(Identity=95%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-575(Identity=95%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-575(Identity=95%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  1. PDB: CBRC-TGUT-02-0002 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-TGUT-02-0002 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-575(Identity=89%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-575(Identity=89%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-575(Identity=89%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-575(Identity=89%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-575(Identity=89%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  2. PDB: CBRC-MMUS-10-0003 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MMUS-10-0003 1EWK,1EWT,1EWV,1ISR,1ISS, Region:33-522(Identity=99%) PDB:1EWK Chain:A (X-ray Resolution...=2.20),Region:33-522(Identity=99%) PDB:1EWT Chain:A (X-ray Resolution=3.70),Region:33...-522(Identity=99%) PDB:1EWV Chain:A (X-ray Resolution=4.00),Region:33-522(Identity=99%) PDB:1ISR Chain:A (X-ray Resolution...=4.00),Region:33-522(Identity=99%) PDB:1ISS Chain:A (X-ray Resolution=3.30), ...

  3. PDB: CBRC-BTAU-01-2808 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-BTAU-01-2808 1EWK,1EWT,1EWV,1ISR,1ISS, Region:33-522(Identity=97%) PDB:1EWK Chain:A (X-ray Resolution...=2.20),Region:33-522(Identity=97%) PDB:1EWT Chain:A (X-ray Resolution=3.70),Region:33...-522(Identity=97%) PDB:1EWV Chain:A (X-ray Resolution=4.00),Region:33-522(Identity=97%) PDB:1ISR Chain:A (X-ray Resolution...=4.00),Region:33-522(Identity=97%) PDB:1ISS Chain:A (X-ray Resolution=3.30), ...

  4. PDB: CBRC-MMUR-01-1389 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MMUR-01-1389 3ODU,3OE0,3OE6,3OE8,3OE9, Region:8-323(Identity=94%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:8-323(Identity=94%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:8-329(...Identity=94%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:8-323(Identity=94%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:8-323(Identity=94%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  5. PDB: CBRC-RNOR-01-0027 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-RNOR-01-0027 1EWK,1EWT,1EWV,1ISR,1ISS, Region:33-522(Identity=100%) PDB:1EWK Chain:A (X-ray Resolution...=2.20),Region:33-522(Identity=100%) PDB:1EWT Chain:A (X-ray Resolution=3.70),Region:...33-522(Identity=100%) PDB:1EWV Chain:A (X-ray Resolution=4.00),Region:33-522(Identity=100%) PDB:1ISR Chain:A (X-ray Resolution...=4.00),Region:33-522(Identity=100%) PDB:1ISS Chain:A (X-ray Resolution=3.30), ...

  6. PDB: CBRC-SARA-01-0838 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-SARA-01-0838 3ODU,3OE0,3OE6,3OE8,3OE9, Region:8-324(Identity=89%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:8-324(Identity=89%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:8-330(...Identity=90%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:8-324(Identity=89%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:8-324(Identity=89%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  7. PDB: CBRC-EEUR-01-1356 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-EEUR-01-1356 3ODU,3OE0,3OE6,3OE8,3OE9, Region:35-347(Identity=90%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:35-347(Identity=90%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:35-3...53(Identity=90%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:35-347(Identity=90%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:35-347(Identity=90%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  8. PDB: CBRC-HSAP-07-0055 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-HSAP-07-0055 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-575(Identity=96%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-575(Identity=96%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-575(Identity=96%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-575(Identity=96%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-575(Identity=96%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  9. PDB: CBRC-RNOR-13-0058 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-RNOR-13-0058 3ODU,3OE0,3OE6,3OE8,3OE9, Region:10-323(Identity=91%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:10-323(Identity=91%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:10-3...29(Identity=91%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:10-323(Identity=91%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:10-323(Identity=91%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  10. PDB: CBRC-GGAL-07-0011 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-GGAL-07-0011 3ODU,3OE0,3OE6,3OE8,3OE9, Region:9-325(Identity=81%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:9-325(Identity=81%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:9-331(...Identity=81%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:9-325(Identity=81%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:9-325(Identity=81%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  11. PDB: CBRC-PABE-08-0035 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PABE-08-0035 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-575(Identity=96%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-575(Identity=96%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-575(Identity=96%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-575(Identity=96%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-575(Identity=96%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  12. PDB: CBRC-RMAC-13-0023 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-RMAC-13-0023 3ODU,3OE0,3OE6,3OE8,3OE9, Region:8-323(Identity=97%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:8-323(Identity=97%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:8-329(...Identity=97%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:8-323(Identity=97%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:8-323(Identity=97%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  13. PDB: CBRC-PTRO-07-0089 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PTRO-07-0089 1EWK,1EWT,1EWV,1ISR,1ISS, Region:33-522(Identity=98%) PDB:1EWK Chain:A (X-ray Resolution...=2.20),Region:33-522(Identity=98%) PDB:1EWT Chain:A (X-ray Resolution=3.70),Region:33...-522(Identity=98%) PDB:1EWV Chain:A (X-ray Resolution=4.00),Region:33-522(Identity=98%) PDB:1ISR Chain:A (X-ray Resolution...=4.00),Region:33-522(Identity=98%) PDB:1ISS Chain:A (X-ray Resolution=3.30), ...

  14. PDB: CBRC-RMAC-04-0056 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-RMAC-04-0056 1EWK,1EWT,1EWV,1ISR,1ISS, Region:33-522(Identity=98%) PDB:1EWK Chain:A (X-ray Resolution...=2.20),Region:33-522(Identity=98%) PDB:1EWT Chain:A (X-ray Resolution=3.70),Region:33...-522(Identity=98%) PDB:1EWV Chain:A (X-ray Resolution=4.00),Region:33-522(Identity=98%) PDB:1ISR Chain:A (X-ray Resolution...=4.00),Region:33-522(Identity=98%) PDB:1ISS Chain:A (X-ray Resolution=3.30), ...

  15. PDB: CBRC-MEUG-01-2439 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MEUG-01-2439 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:35-585(Identity=94%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:35-585(Identity=94%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:35...-585(Identity=94%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:35-585(Identity=94%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:35-585(Identity=94%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  16. PDB: CBRC-OGAR-01-0515 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-OGAR-01-0515 3ODU,3OE0,3OE6,3OE8,3OE9, Region:2-318(Identity=94%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:2-318(Identity=94%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:2-324(...Identity=94%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:2-318(Identity=94%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:2-318(Identity=94%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  17. PDB: CBRC-GGAL-01-0005 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-GGAL-01-0005 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-575(Identity=89%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-575(Identity=89%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-575(Identity=89%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-575(Identity=89%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-575(Identity=89%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  18. PDB: CBRC-MMUS-05-0006 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MMUS-05-0006 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-575(Identity=98%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-575(Identity=98%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-575(Identity=98%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-575(Identity=98%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-575(Identity=98%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  19. PDB: CBRC-BTAU-01-2536 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-BTAU-01-2536 3ODU,3OE0,3OE6,3OE8,3OE9, Region:10-324(Identity=92%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:10-324(Identity=92%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:10-3...30(Identity=92%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:10-324(Identity=92%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:10-324(Identity=92%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  20. PDB: CBRC-PVAM-01-1450 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PVAM-01-1450 3ODU,3OE0,3OE6,3OE8,3OE9, Region:113-429(Identity=92%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:113-429(Identity=92%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:11...3-435(Identity=92%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:113-429(Identity=92%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:113-429(Identity=92%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  1. PDB: CBRC-LAFR-01-1328 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-LAFR-01-1328 3ODU,3OE0,3OE6,3OE8,3OE9, Region:2-311(Identity=93%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:2-311(Identity=93%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:2-317(...Identity=93%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:2-311(Identity=93%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:2-311(Identity=93%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  2. PDB: CBRC-HSAP-02-0054 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-HSAP-02-0054 3ODU,3OE0,3OE6,3OE8,3OE9, Region:8-323(Identity=99%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:8-323(Identity=99%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:8-329(...Identity=99%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:8-323(Identity=99%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:8-323(Identity=99%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  3. PDB: CBRC-OCUN-01-0879 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-OCUN-01-0879 3ODU,3OE0,3OE6,3OE8,3OE9, Region:13-326(Identity=96%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:13-326(Identity=96%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:13-3...32(Identity=96%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:13-326(Identity=96%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:13-326(Identity=96%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  4. PDB: CBRC-PCAP-01-1210 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PCAP-01-1210 3ODU,3OE0,3OE6,3OE8,3OE9, Region:8-323(Identity=93%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:8-323(Identity=93%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:8-329(...Identity=93%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:8-323(Identity=93%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:8-323(Identity=93%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  5. PDB: CBRC-HSAP-06-0098 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-HSAP-06-0098 1EWK,1EWT,1EWV,1ISR,1ISS, Region:33-522(Identity=98%) PDB:1EWK Chain:A (X-ray Resolution...=2.20),Region:33-522(Identity=98%) PDB:1EWT Chain:A (X-ray Resolution=3.70),Region:33...-522(Identity=98%) PDB:1EWV Chain:A (X-ray Resolution=4.00),Region:33-522(Identity=98%) PDB:1ISR Chain:A (X-ray Resolution...=4.00),Region:33-522(Identity=98%) PDB:1ISS Chain:A (X-ray Resolution=3.30), ...

  6. PDB: CBRC-OANA-01-1931 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-OANA-01-1931 3ODU,3OE0,3OE6,3OE8,3OE9, Region:37-348(Identity=84%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:37-348(Identity=84%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:37-3...54(Identity=84%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:37-348(Identity=84%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:37-348(Identity=84%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  7. PDB: CBRC-TGUT-10-0011 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-TGUT-10-0011 3ODU,3OE0,3OE6,3OE8,3OE9, Region:13-329(Identity=81%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:13-329(Identity=81%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:13-3...35(Identity=82%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:13-329(Identity=81%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:13-329(Identity=81%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  8. PDB: CBRC-ETEL-01-1471 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-ETEL-01-1471 3ODU,3OE0,3OE6,3OE8,3OE9, Region:52-369(Identity=87%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:52-369(Identity=87%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:52-3...75(Identity=87%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:52-369(Identity=87%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:52-369(Identity=87%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  9. PDB: CBRC-PVAM-01-1471 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PVAM-01-1471 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-575(Identity=96%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-575(Identity=96%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-575(Identity=96%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-575(Identity=96%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-575(Identity=96%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  10. PDB: CBRC-PHAM-01-1532 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PHAM-01-1532 3ODU,3OE0,3OE6,3OE8,3OE9, Region:8-323(Identity=97%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:8-323(Identity=97%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:8-329(...Identity=97%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:8-323(Identity=97%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:8-323(Identity=97%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  11. PDB: CBRC-MMUR-01-1429 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MMUR-01-1429 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-575(Identity=96%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-575(Identity=96%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-575(Identity=96%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-575(Identity=96%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-575(Identity=96%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  12. PDB: CBRC-PHAM-01-1177 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PHAM-01-1177 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:25-575(Identity=96%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:25-575(Identity=96%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:25...-575(Identity=96%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:25-575(Identity=96%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:25-575(Identity=96%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  13. PDB: CBRC-MDOM-04-0074 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MDOM-04-0074 3ODU,3OE0,3OE6,3OE8,3OE9, Region:18-334(Identity=82%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:18-334(Identity=82%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:18-3...40(Identity=82%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:18-334(Identity=82%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:18-334(Identity=82%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  14. PDB: CBRC-TTRU-01-0390 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-TTRU-01-0390 3ODU,3OE0,3OE6,3OE8,3OE9, Region:2-320(Identity=93%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:2-320(Identity=93%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:2-326(...Identity=93%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:2-320(Identity=93%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:2-320(Identity=93%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  15. PDB: CBRC-TSYR-01-0036 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-TSYR-01-0036 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:1-551(Identity=97%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:1-551(Identity=97%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:1-55...1(Identity=97%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:1-551(Identity=97%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:1-551(Identity=97%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  16. PDB: CBRC-PCAP-01-1145 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-PCAP-01-1145 1EWK,1EWT,1EWV,1ISR,1ISS, Region:33-522(Identity=98%) PDB:1EWK Chain:A (X-ray Resolution...=2.20),Region:33-522(Identity=98%) PDB:1EWT Chain:A (X-ray Resolution=3.70),Region:33...-522(Identity=98%) PDB:1EWV Chain:A (X-ray Resolution=4.00),Region:33-522(Identity=98%) PDB:1ISR Chain:A (X-ray Resolution...=4.00),Region:33-522(Identity=98%) PDB:1ISS Chain:A (X-ray Resolution=3.30), ...

  17. PDB: CBRC-MMUS-01-0060 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MMUS-01-0060 3ODU,3OE0,3OE6,3OE8,3OE9, Region:6-326(Identity=90%) PDB:3ODU Chain:A (X-ray Resolution...=2.5),Region:6-326(Identity=90%) PDB:3OE0 Chain:A (X-ray Resolution=2.9),Region:6-332(...Identity=90%) PDB:3OE6 Chain:A (X-ray Resolution=3.2),Region:6-326(Identity=90%) PDB:3OE8 Chain:A (X-ray Resolution...=3.1),Region:6-326(Identity=90%) PDB:3OE9 Chain:A (X-ray Resolution=3.1), ...

  18. PDB: CBRC-CFAM-01-0008 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-CFAM-01-0008 1EWK,1EWT,1EWV,1ISR,1ISS, Region:33-522(Identity=98%) PDB:1EWK Chain:A (X-ray Resolution...=2.20),Region:33-522(Identity=98%) PDB:1EWT Chain:A (X-ray Resolution=3.70),Region:33...-522(Identity=98%) PDB:1EWV Chain:A (X-ray Resolution=4.00),Region:33-522(Identity=98%) PDB:1ISR Chain:A (X-ray Resolution...=4.00),Region:33-522(Identity=98%) PDB:1ISS Chain:A (X-ray Resolution=3.30), ...

  19. PDB: CBRC-ACAR-01-1082 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-ACAR-01-1082 2E4U,2E4V,2E4W,2E4X,2E4Y, Region:35-585(Identity=87%) PDB:2E4U Chain:A (X-ray Resolution...=2.35),Region:35-585(Identity=87%) PDB:2E4V Chain:A (X-ray Resolution=2.40),Region:35...-585(Identity=87%) PDB:2E4W Chain:A (X-ray Resolution=2.40),Region:35-585(Identity=87%) PDB:2E4X Chain:A (X-ray Resolution...=2.75),Region:35-585(Identity=87%) PDB:2E4Y Chain:A (X-ray Resolution=3.40), ...

  20. PDB: CBRC-MDOM-02-0383 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-MDOM-02-0383 1EWK,1EWT,1EWV,1ISR,1ISS, Region:33-522(Identity=96%) PDB:1EWK Chain:A (X-ray Resolution...=2.20),Region:33-522(Identity=96%) PDB:1EWT Chain:A (X-ray Resolution=3.70),Region:33...-522(Identity=96%) PDB:1EWV Chain:A (X-ray Resolution=4.00),Region:33-522(Identity=96%) PDB:1ISR Chain:A (X-ray Resolution...=4.00),Region:33-522(Identity=96%) PDB:1ISS Chain:A (X-ray Resolution=3.30), ...

  1. MetalPDB: a database of metal sites in biological macromolecular structures.

    Science.gov (United States)

    Andreini, Claudia; Cavallaro, Gabriele; Lorenzini, Serena; Rosato, Antonio

    2013-01-01

    We present here MetalPDB (freely accessible at http://metalweb.cerm.unifi.it), a novel resource aimed at conveying the information available on the three-dimensional (3D) structures of metal-binding biological macromolecules in a consistent and effective manner. This is achieved through the systematic and automated representation of metal-binding sites in proteins and nucleic acids by way of Minimal Functional Sites (MFSs). MFSs are 3D templates that describe the local environment around the metal(s) independently of the larger context of the macromolecular structure embedding the site(s), and are the central objects of MetalPDB design. MFSs are grouped into equistructural (broadly defined as sites found in corresponding positions in similar structures) and equivalent sites (equistructural sites that contain the same metals), allowing users to easily analyse similarities and variations in metal-macromolecule interactions, and to link them to functional information. The web interface of MetalPDB allows access to a comprehensive overview of metal-containing biological structures, providing a basis to investigate the basic principles governing the properties of these systems. MetalPDB is updated monthly in an automated manner.

  2. PDB: CBRC-PHAM-01-1599 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 2HPY,2I35,2I36,2I37,2J4Y,3C9M,1RY1,1EDS,1EDV,1EDW,1FDF,1NZS,1VQX, Region:1-348(Identity=93%) PDB:2PED Chain:...A (X-ray Resolution=2.95),Region:1-348(Identity=93%) PDB:3C9L Chain:A (X-ray Resolution=2.65),Region:1-348(Identity...=93%) PDB:3CAP Chain:A (X-ray Resolution=2.90),Region:1-40(Identity=95%) P...DB:1EDX Chain:A (NMR),Region:1-348(Identity=93%) PDB:1F88 Chain:A (X-ray Resolution=2.80),Region:1-348(Identity...=93%) PDB:3DQB Chain:A (X-ray Resolution=3.20),Region:1-348(Identity=93%) PDB:1GZM Chain:A (X-ray Resolut

  3. PDB: CBRC-RMAC-11-0073 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 2HPY,2I35,2I36,2I37,2J4Y,3C9M,1RY1,1EDS,1EDV,1EDW,1FDF,1NZS,1VQX, Region:1-348(Identity=93%) PDB:2PED Chain:...A (X-ray Resolution=2.95),Region:1-348(Identity=93%) PDB:3C9L Chain:A (X-ray Resolution=2.65),Region:1-348(Identity...=93%) PDB:3CAP Chain:A (X-ray Resolution=2.90),Region:1-40(Identity=95%) P...DB:1EDX Chain:A (NMR),Region:1-348(Identity=93%) PDB:1F88 Chain:A (X-ray Resolution=2.80),Region:1-348(Identity...=93%) PDB:3DQB Chain:A (X-ray Resolution=3.20),Region:1-348(Identity=93%) PDB:1GZM Chain:A (X-ray Resolut

  4. PDB: CBRC-PVAM-01-0804 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 2HPY,2I35,2I36,2I37,2J4Y,3C9M,1RY1,1EDS,1EDV,1EDW,1FDF,1NZS,1VQX, Region:1-348(Identity=94%) PDB:2PED Chain:...A (X-ray Resolution=2.95),Region:1-348(Identity=94%) PDB:3C9L Chain:A (X-ray Resolution=2.65),Region:1-348(Identity...=94%) PDB:3CAP Chain:A (X-ray Resolution=2.90),Region:1-40(Identity=97%) P...DB:1EDX Chain:A (NMR),Region:1-348(Identity=94%) PDB:1F88 Chain:A (X-ray Resolution=2.80),Region:1-348(Identity...=94%) PDB:3DQB Chain:A (X-ray Resolution=3.20),Region:1-348(Identity=94%) PDB:1GZM Chain:A (X-ray Resolut

  5. PDB: CBRC-CFAM-20-0004 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 2HPY,2I35,2I36,2I37,2J4Y,3C9M,1RY1,1EDS,1EDV,1EDW,1FDF,1NZS,1VQX, Region:1-348(Identity=94%) PDB:2PED Chain:...A (X-ray Resolution=2.95),Region:1-348(Identity=94%) PDB:3C9L Chain:A (X-ray Resolution=2.65),Region:1-348(Identity...=94%) PDB:3CAP Chain:A (X-ray Resolution=2.90),Region:1-40(Identity=97%) P...DB:1EDX Chain:A (NMR),Region:1-348(Identity=94%) PDB:1F88 Chain:A (X-ray Resolution=2.80),Region:1-348(Identity...=94%) PDB:3DQB Chain:A (X-ray Resolution=3.20),Region:1-348(Identity=94%) PDB:1GZM Chain:A (X-ray Resolut

  6. PDB: CBRC-MDOM-06-0154 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 2HPY,2I35,2I36,2I37,2J4Y,3C9M,1RY1,1EDS,1EDV,1EDW,1FDF,1NZS,1VQX, Region:1-348(Identity=93%) PDB:2PED Chain:...A (X-ray Resolution=2.95),Region:1-348(Identity=93%) PDB:3C9L Chain:A (X-ray Resolution=2.65),Region:1-348(Identity...=93%) PDB:3CAP Chain:A (X-ray Resolution=2.90),Region:1-40(Identity=90%) P...DB:1EDX Chain:A (NMR),Region:1-348(Identity=93%) PDB:1F88 Chain:A (X-ray Resolution=2.80),Region:1-348(Identity...=93%) PDB:3DQB Chain:A (X-ray Resolution=3.20),Region:1-348(Identity=93%) PDB:1GZM Chain:A (X-ray Resolut

  7. PDB: CBRC-RNOR-04-0298 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 2HPY,2I35,2I36,2I37,2J4Y,3C9M,1RY1,1EDS,1EDV,1EDW,1FDF,1NZS,1VQX, Region:1-348(Identity=93%) PDB:2PED Chain:...A (X-ray Resolution=2.95),Region:1-348(Identity=93%) PDB:3C9L Chain:A (X-ray Resolution=2.65),Region:1-348(Identity...=93%) PDB:3CAP Chain:A (X-ray Resolution=2.90),Region:1-40(Identity=95%) P...DB:1EDX Chain:A (NMR),Region:1-348(Identity=93%) PDB:1F88 Chain:A (X-ray Resolution=2.80),Region:1-348(Identity...=93%) PDB:3DQB Chain:A (X-ray Resolution=3.20),Region:1-348(Identity=93%) PDB:1GZM Chain:A (X-ray Resolut

  8. PDB: CBRC-PTRO-04-0067 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 2HPY,2I35,2I36,2I37,2J4Y,3C9M,1RY1,1EDS,1EDV,1EDW,1FDF,1NZS,1VQX, Region:1-348(Identity=93%) PDB:2PED Chain:...A (X-ray Resolution=2.95),Region:1-348(Identity=93%) PDB:3C9L Chain:A (X-ray Resolution=2.65),Region:1-348(Identity...=93%) PDB:3CAP Chain:A (X-ray Resolution=2.90),Region:1-40(Identity=95%) P...DB:1EDX Chain:A (NMR),Region:1-348(Identity=93%) PDB:1F88 Chain:A (X-ray Resolution=2.80),Region:1-348(Identity...=93%) PDB:3DQB Chain:A (X-ray Resolution=3.20),Region:1-348(Identity=93%) PDB:1GZM Chain:A (X-ray Resolut

  9. Aquaglyceroporins Are the Entry Pathway of Boric Acid in Trypanosoma brucei.

    Science.gov (United States)

    Marsiccobetre, Sabrina; Rodríguez-Acosta, Alexis; Lang, Florian; Figarella, Katherine; Uzcátegui, Néstor L

    2017-05-01

    The boron element possesses a range of different effects on living beings. It is essential to beneficial at low concentrations, but toxic at excessive concentrations. Recently, some boron-based compounds have been identified as promising molecules against Trypanosoma brucei, the causative agent of sleeping sickness. However, until now, the boron metabolism and its access route into the parasite remained elusive. The present study addressed the permeability of T. brucei aquaglyceroporins (TbAQPs) for boric acid, the main natural boron species. To this end, the three TbAQPs were expressed in Saccharomyces cerevisiae and Xenopus laevis oocytes. Our findings in both expression systems showed that all three TbAQPs are permeable for boric acid. Especially TbAQP2 is highly permeable for this compound, displaying one of the highest conductances reported for a solute in these channels. Additionally, T. brucei aquaglyceroporin activities were sensitive to pH. Taken together, these results establish that TbAQPs are channels for boric acid and are highly efficient entry pathways for boron into the parasite. Our findings stress the importance of studying the physiological functions of boron and their derivatives in T. brucei, as well as the pharmacological implications of their uptake by trypanosome aquaglyceroporins. Copyright © 2017 Elsevier B.V. All rights reserved.

  10. Promotion of viral internal ribosomal entry site-mediated translation under amino acid starvation.

    Science.gov (United States)

    Licursi, Maria; Komatsu, Yumiko; Pongnopparat, Theerawat; Hirasawa, Kensuke

    2012-05-01

    Cap-dependent and internal ribosomal entry site (IRES)-mediated translation are regulated differently within cells. Viral IRES-mediated translation often remains active when cellular cap-dependent translation is severely impaired under cellular stresses induced by virus infection. To investigate how cellular stresses influence the efficiency of viral IRES-mediated translation, we used a bicistronic luciferase reporter construct harbouring IRES elements from the following viruses: encephalomyocarditis virus (EMCV), foot-and-mouth disease virus (FMDV), hepatitis C virus (HCV) or human rhinovirus (HRV). NIH3T3 cells transfected with these bicistronic reporter constructs were subjected to different cellular stresses. Increased translation initiation was only observed under amino acid starvation when EMCV or FMDV IRES elements were present. To identify cellular mechanisms that promoted viral IRES-mediated translation, we tested the involvement of eukaryotic initiation factor 4E-binding protein (4E-BP), general control non-depressed 2 (GCN2) and eukaryotic initiation factor 2B (eIF2B), as these are known to be modulated under amino acid starvation. Knockdown of 4E-BP1 impaired the promotion of EMCV and FMDV IRES-mediated translation under amino acid starvation, whereas GCN2 and eIF2B were not involved. To further investigate how 4E-BP1 regulates translation initiated by EMCV and FMDV IRES elements, we used a phosphoinositide kinase-3 inhibitor (LY294002), an mTOR inhibitor (Torin1) or leucine starvation to mimic 4E-BP1 dephosphorylation induced by amino acid starvation. 4E-BP1 dephosphorylation induced by the treatments was not sufficient to promote viral IRES-mediated translation. These results suggest that 4E-BP1 regulates EMCV and FMDV IRES-mediated translation under amino acid starvation, but not via its dephosphorylation.

  11. Cu(I)-catalyzed (11)C carboxylation of boronic acid esters: a rapid and convenient entry to (11)C-labeled carboxylic acids, esters, and amides.

    Science.gov (United States)

    Riss, Patrick J; Lu, Shuiyu; Telu, Sanjay; Aigbirhio, Franklin I; Pike, Victor W

    2012-03-12

    Rapid and direct: the carboxylation of boronic acid esters with (11)CO(2) provides [(11)C]carboxylic acids as a convenient entry into [(11)C]esters and [(11)C]amides. This conversion of boronates is tolerant to diverse functional groups (e.g., halo, nitro, or carbonyl).

  12. Boronic acid-modified lipid nanocapsules: a novel platform for the highly efficient inhibition of hepatitis C viral entry

    Science.gov (United States)

    Khanal, Manakamana; Barras, Alexandre; Vausselin, Thibaut; Fénéant, Lucie; Boukherroub, Rabah; Siriwardena, Aloysius; Dubuisson, Jean; Szunerits, Sabine

    2015-01-01

    The search for viral entry inhibitors that selectively target viral envelope glycoproteins has attracted increasing interest in recent years. Amongst the handful of molecules reported to show activity as hepatitis C virus (HCV) entry inhibitors are a variety of glycan-binding proteins including the lectins, cyanovirin-N (CV-N) and griffithsin. We recently demonstrated that boronic acid-modified nanoparticles are able to reduce HCV entry through a similar mechanism to that of lectins. A major obstacle to any further development of these nanostructures as viral entry inhibitors is their only moderate maximal inhibition potential. In the present study, we report that lipid nanocapsules (LNCs), surface-functionalized with amphiphilic boronic acid (BA) through their post-insertion into the semi-rigid shell of the LNCs, are indeed far superior as HCV entry inhibitors when compared with previously reported nanostructures. These 2nd generation particles (BA-LNCs) are shown to prevent HCV infection in the micromolar range (IC50 = 5.4 μM of BA moieties), whereas the corresponding BA monomers show no significant effects even at the highest analyzed concentration (20 μM). The new BA-LNCs are the most promising boronolectin-based HCV entry inhibitors reported to date and are thus observed to show great promise in the development of a pseudolectin-based therapeutic agent.The search for viral entry inhibitors that selectively target viral envelope glycoproteins has attracted increasing interest in recent years. Amongst the handful of molecules reported to show activity as hepatitis C virus (HCV) entry inhibitors are a variety of glycan-binding proteins including the lectins, cyanovirin-N (CV-N) and griffithsin. We recently demonstrated that boronic acid-modified nanoparticles are able to reduce HCV entry through a similar mechanism to that of lectins. A major obstacle to any further development of these nanostructures as viral entry inhibitors is their only moderate maximal

  13. Retinoic Acid signalling and the control of meiotic entry in the human fetal gonad.

    Directory of Open Access Journals (Sweden)

    Andrew J Childs

    Full Text Available The development of mammalian fetal germ cells along oogenic or spermatogenic fate trajectories is dictated by signals from the surrounding gonadal environment. Germ cells in the fetal testis enter mitotic arrest, whilst those in the fetal ovary undergo sex-specific entry into meiosis, the initiation of which is thought to be mediated by selective exposure of fetal ovarian germ cells to mesonephros-derived retinoic acid (RA. Aspects of this model are hard to reconcile with the spatiotemporal pattern of germ cell differentiation in the human fetal ovary, however. We have therefore examined the expression of components of the RA synthesis, metabolism and signalling pathways, and their downstream effectors and inhibitors in germ cells around the time of the initiation of meiosis in the human fetal gonad. Expression of the three RA-synthesising enzymes, ALDH1A1, 2 and 3 in the fetal ovary and testis was equal to or greater than that in the mesonephros at 8-9 weeks gestation, indicating an intrinsic capacity within the gonad to synthesise RA. Using immunohistochemistry to detect RA receptors RARα, β and RXRα, we find germ cells to be the predominant target of RA signalling in the fetal human ovary, but also reveal widespread receptor nuclear localization indicative of signalling in the testis, suggesting that human fetal testicular germ cells are not efficiently shielded from RA by the action of the RA-metabolising enzyme CYP26B1. Consistent with this, expression of CYP26B1 was greater in the human fetal ovary than testis, although the sexually-dimorphic expression patterns of the germ cell-intrinsic regulators of meiotic initiation, STRA8 and NANOS2, appear conserved. Finally, we demonstrate that RA induces a two-fold increase in STRA8 expression in cultures of human fetal testis, but is not sufficient to cause widespread meiosis-associated gene expression. Together, these data indicate that while local production of RA within the fetal ovary may

  14. A Schisandra-Derived Compound Schizandronic Acid Inhibits Entry of Pan-HCV Genotypes into Human Hepatocytes

    Science.gov (United States)

    Qian, Xi-Jing; Zhang, Xiao-Lian; Zhao, Ping; Jin, Yong-Sheng; Chen, Hai-Sheng; Xu, Qing-Qiang; Ren, Hao; Zhu, Shi-Ying; Tang, Hai-Lin; Zhu, Yong-Zhe; Qi, Zhong-Tian

    2016-01-01

    Despite recent progress in the development of hepatitis C virus (HCV) inhibitors, cost-effective antiviral drugs, especially among the patients receiving liver transplantations, are still awaited. Schisandra is a traditional medicinal herb used to treat a range of liver disorders including hepatitis for thousands of years in China. To isolate the bioactive compounds of schisandra for the treatment of HCV infection, we screened a schisandra-extracts library and identified a tetracyclic triterpenoid, schizandronic acid (SZA), as a novel HCV entry inhibitor. Our findings suggested that SZA potently inhibited pan-HCV genotype entry into hepatoma cells and primary human hepatocytes without interfering virus binding on cell surface or internalization. However, virion-cell fusion process was impaired in the presence of SZA, along with the increased host membrane fluidity. We also found that SZA inhibited the spread of HCV to the neighboring cells, and combinations of SZA with interferon or telaprevir resulted in additive synergistic effect against HCV. Additionally, SZA diminished the establishment of HCV infection in vivo. The SZA target is different from conventional direct-acting antiviral agents, therefore, SZA is a potential therapeutic compound for the development of effective HCV entry inhibitors, especially for patients who need to prevent HCV reinfection during the course of liver transplantations. PMID:27252043

  15. Carboxylic acids in crystallization of macromolecules: learning from successful crystallization experiments.

    Science.gov (United States)

    Offermann, Lesa R; He, John Z; Mank, Nicholas J; Booth, William T; Chruszcz, Maksymilian

    2014-03-01

    The production of macromolecular crystals suitable for structural analysis is one of the most important and limiting steps in the structure determination process. Often, preliminary crystallization trials are performed using hundreds of empirically selected conditions. Carboxylic acids and/or their salts are one of the most popular components of these empirically derived crystallization conditions. Our findings indicate that almost 40 % of entries deposited to the Protein Data Bank (PDB) reporting crystallization conditions contain at least one carboxylic acid. In order to analyze the role of carboxylic acids in macromolecular crystallization, a large-scale analysis of the successful crystallization experiments reported to the PDB was performed. The PDB is currently the largest source of crystallization data, however it is not easily searchable. These complications are due to a combination of a free text format, which is used to capture information on the crystallization experiments, and the inconsistent naming of chemicals used in crystallization experiments. Despite these difficulties, our approach allows for the extraction of over 47,000 crystallization conditions from the PDB. Initially, the selected conditions were investigated to determine which carboxylic acids or their salts are most often present in crystallization solutions. From this group, selected sets of crystallization conditions were analyzed in detail, assessing parameters such as concentration, pH, and precipitant used. Our findings will lead to the design of new crystallization screens focused around carboxylic acids.

  16. CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues.

    Science.gov (United States)

    Jo, Sunhwan; Cheng, Xi; Islam, Shahidul M; Huang, Lei; Rui, Huan; Zhu, Allen; Lee, Hui Sun; Qi, Yifei; Han, Wei; Vanommeslaeghe, Kenno; MacKerell, Alexander D; Roux, Benoît; Im, Wonpil

    2014-01-01

    CHARMM-GUI, http://www.charmm-gui.org, is a web-based graphical user interface to prepare molecular simulation systems and input files to facilitate the usage of common and advanced simulation techniques. Since it is originally developed in 2006, CHARMM-GUI has been widely adopted for various purposes and now contains a number of different modules designed to setup a broad range of simulations including free energy calculation and large-scale coarse-grained representation. Here, we describe functionalities that have recently been integrated into CHARMM-GUI PDB Manipulator, such as ligand force field generation, incorporation of methanethiosulfonate spin labels and chemical modifiers, and substitution of amino acids with unnatural amino acids. These new features are expected to be useful in advanced biomolecular modeling and simulation of proteins.

  17. Continuous mutual improvement of macromolecular structure models in the PDB and of X-ray crystallographic software: the dual role of deposited experimental data

    Energy Technology Data Exchange (ETDEWEB)

    Terwilliger, Thomas C., E-mail: terwilliger@lanl.gov [Los Alamos National Laboratory, Mail Stop M888, Los Alamos, NM 87507 (United States); Bricogne, Gerard, E-mail: terwilliger@lanl.gov [Global Phasing Ltd, Sheraton House, Castle Park, Cambridge CB3 0AX (United Kingdom); Los Alamos National Laboratory, Mail Stop M888, Los Alamos, NM 87507 (United States)

    2014-10-01

    Macromolecular structures deposited in the PDB can and should be continually reinterpreted and improved on the basis of their accompanying experimental X-ray data, exploiting the steady progress in methods and software that the deposition of such data into the PDB on a massive scale has made possible. Accurate crystal structures of macromolecules are of high importance in the biological and biomedical fields. Models of crystal structures in the Protein Data Bank (PDB) are in general of very high quality as deposited. However, methods for obtaining the best model of a macromolecular structure from a given set of experimental X-ray data continue to progress at a rapid pace, making it possible to improve most PDB entries after their deposition by re-analyzing the original deposited data with more recent software. This possibility represents a very significant departure from the situation that prevailed when the PDB was created, when it was envisioned as a cumulative repository of static contents. A radical paradigm shift for the PDB is therefore proposed, away from the static archive model towards a much more dynamic body of continuously improving results in symbiosis with continuously improving methods and software. These simultaneous improvements in methods and final results are made possible by the current deposition of processed crystallographic data (structure-factor amplitudes) and will be supported further by the deposition of raw data (diffraction images). It is argued that it is both desirable and feasible to carry out small-scale and large-scale efforts to make this paradigm shift a reality. Small-scale efforts would focus on optimizing structures that are of interest to specific investigators. Large-scale efforts would undertake a systematic re-optimization of all of the structures in the PDB, or alternatively the redetermination of groups of structures that are either related to or focused on specific questions. All of the resulting structures should be

  18. PDB ligand conformational energies calculated quantum-mechanically.

    Science.gov (United States)

    Sitzmann, Markus; Weidlich, Iwona E; Filippov, Igor V; Liao, Chenzhong; Peach, Megan L; Ihlenfeldt, Wolf-Dietrich; Karki, Rajeshri G; Borodina, Yulia V; Cachau, Raul E; Nicklaus, Marc C

    2012-03-26

    We present here a greatly updated version of an earlier study on the conformational energies of protein-ligand complexes in the Protein Data Bank (PDB) [Nicklaus et al. Bioorg. Med. Chem. 1995, 3, 411-428], with the goal of improving on all possible aspects such as number and selection of ligand instances, energy calculations performed, and additional analyses conducted. Starting from about 357,000 ligand instances deposited in the 2008 version of the Ligand Expo database of the experimental 3D coordinates of all small-molecule instances in the PDB, we created a "high-quality" subset of ligand instances by various filtering steps including application of crystallographic quality criteria and structural unambiguousness. Submission of 640 Gaussian 03 jobs yielded a set of about 415 successfully concluded runs. We used a stepwise optimization of internal degrees of freedom at the DFT level of theory with the B3LYP/6-31G(d) basis set and a single-point energy calculation at B3LYP/6-311++G(3df,2p) after each round of (partial) optimization to separate energy changes due to bond length stretches vs bond angle changes vs torsion changes. Even for the most "conservative" choice of all the possible conformational energies-the energy difference between the conformation in which all internal degrees of freedom except torsions have been optimized and the fully optimized conformer-significant energy values were found. The range of 0 to ~25 kcal/mol was populated quite evenly and independently of the crystallographic resolution. A smaller number of "outliers" of yet higher energies were seen only at resolutions above 1.3 Å. The energies showed some correlation with molecular size and flexibility but not with crystallographic quality metrics such as the Cruickshank diffraction-component precision index (DPI) and R(free)-R, or with the ligand instance-specific metrics such as occupancy-weighted B-factor (OWAB), real-space R factor (RSR), and real-space correlation coefficient

  19. All-trans retinoic acid promotes neural lineage entry by pluripotent embryonic stem cells via multiple pathways

    Directory of Open Access Journals (Sweden)

    Fang Bo

    2009-07-01

    Full Text Available Abstract Background All-trans retinoic acid (RA is one of the most important morphogens with pleiotropic actions. Its embryonic distribution correlates with neural differentiation in the developing central nervous system. To explore the precise effects of RA on neural differentiation of mouse embryonic stem cells (ESCs, we detected expression of RA nuclear receptors and RA-metabolizing enzymes in mouse ESCs and investigated the roles of RA in adherent monolayer culture. Results Upon addition of RA, cell differentiation was directed rapidly and exclusively into the neural lineage. Conversely, pharmacological interference with RA signaling suppressed this neural differentiation. Inhibition of fibroblast growth factor (FGF signaling did not suppress significantly neural differentiation in RA-treated cultures. Pharmacological interference with extracellular signal-regulated kinase (ERK pathway or activation of Wnt pathway effectively blocked the RA-promoted neural specification. ERK phosphorylation was enhanced in RA-treated cultures at the early stage of differentiation. Conclusion RA can promote neural lineage entry by ESCs in adherent monolayer culture systems. This effect depends on RA signaling and its crosstalk with the ERK and Wnt pathways.

  20. PDB4DNA: Implementation of DNA geometry from the Protein Data Bank (PDB) description for Geant4-DNA Monte-Carlo simulations

    Science.gov (United States)

    Delage, E.; Pham, Q. T.; Karamitros, M.; Payno, H.; Stepan, V.; Incerti, S.; Maigne, L.; Perrot, Y.

    2015-07-01

    This paper describes PDB4DNA, a new Geant4 user application, based on an independent, cross-platform, free and open source C++ library, so-called PDBlib, which enables use of atomic level description of DNA molecule in Geant4 Monte Carlo particle transport simulations. For the evaluation of direct damage induced on the DNA molecule by ionizing particles, the application makes use of an algorithm able to determine the closest atom in the DNA molecule to energy depositions. Both the PDB4DNA application and the PDBlib library are available as free and open source under the Geant4 license.

  1. Analisis Hubungan Ekspor, Impor, PDB dan Utang Luar Negeri Indonesia Periode 1970-2013

    Directory of Open Access Journals (Sweden)

    Dison M.H. Batubara

    2015-11-01

    Full Text Available Tujuan penelitian ini adalah untuk mengetahui ada tidaknya hubungan kausalitas serta kointegrasi di antara ekspor, impor, PDB dan utang luar negeri Indonesia dengan memakai data sekunder time series tahun 1970-2013. Penelitian ini menerapkan metode Vector Autoregression (VAR yang meliputi Granger-Causality test dan Johansen Co-Integration test, yang dilanjutkan dengan estimasi Vector Error Correction Model (VECM dan forecasting melalui analisis Impulse Response Function (IRF dan Forecast Error Variance Decomposition (FEVD. Hasil uji Granger-Causality menunjukkan diantara keempat variabel tidak terdapat kausalitas, namun terdapat lima hubungan satu arah (unidirectional, yang meliputi ekspor ke impor, ekspor ke utang luar negeri, PDB ke impor, impor ke utang luar negeri dan PDB ke utang luar negeri. Johansen Co-Integration test menunjukkan bahwa keempat variabel terkointegrasi. Analisis IRF dan FEVD menunjukkan bahwa variabel yang paling berpengaruh terhadap ekspor, impor dan PDB adalah ekspor, sedangkan variabel yang paling berpengaruh terhadap utang luar negeri adalah impor

  2. An approach to creating a more realistic working model from a protein data bank entry

    Science.gov (United States)

    Brandon, Christopher J.; Martin, Benjamin P.; McGee, Kelly J.; Stewart, James J. P.; Braun-Sand, Sonja B.

    2015-01-01

    An accurate model of three-dimensional protein structure is important in a variety of fields such as structure-based drug design and mechanistic studies of enzymatic reactions. While the entries in the Protein Data Bank (http://www.pdb.org) provide valuable information about protein structures, a small fraction of the PDB structures were found to contain anomalies not reported in the PDB file. The semiempirical PM7 method in MOPAC2012 was used for identifying anomalously short hydrogen bonds, C–H···O/C–H···N interactions, non-bonding close contacts, and unrealistic covalent bond lengths in recently published Protein Data Bank files. It was also used to generate new structures with these faults removed. When the semiempirical models were compared to those of PDB_REDO (http://www.cmbi.ru.nl/pdb_redo/), the clashscores, as defined by MolProbity (http://molprobity.biochem.duke.edu/), were better in about 50 % of the structures. The semiempirical models also had a lower root-mean-square-deviation value in nearly all cases than those from PDB_REDO, indicative of a better conservation of the tertiary structure. Finally, the semiempirical models were found to have lower clashscores than the initial PDB file in all but one case. Because this approach maintains as much of the original tertiary structure as possible while improving anomalous interactions, it should be useful to theoreticians, experimentalists, and crystallographers investigating the structure and function of proteins. PMID:25605595

  3. Design, synthesis and biological evaluation of novel L-ascorbic acid-conjugated pentacyclic triterpene derivatives as potential influenza virus entry inhibitors.

    Science.gov (United States)

    Wang, Han; Xu, Renyang; Shi, Yongying; Si, Longlong; Jiao, Pingxuan; Fan, Zibo; Han, Xu; Wu, Xingyu; Zhou, Xiaoshu; Yu, Fei; Zhang, Yongmin; Zhang, Liangren; Zhang, Lihe; Zhou, Demin; Xiao, Sulong

    2016-03-03

    Since the influenza viruses can rapidly evolve, it is urgently required to develop novel anti-influenza agents possessing a novel mechanism of action. In our previous study, two pentacyclic triterpene derivatives (Q8 and Y3) have been found to have anti-influenza virus entry activities. Keeping the potential synergy of biological activity of pentacyclic triterpenes and l-ascorbic acid in mind, we synthesized a series of novel l-ascorbic acid-conjugated pentacyclic triterpene derivatives (18-26, 29-31, 35-40 and 42-43). Moreover, we evaluated these novel compounds for their anti-influenza activities against A/WSN/33 virus in MDCK cells. Among all evaluated compounds, the 2,3-O,O-dibenzyl-6-deoxy-l-ascorbic acid-betulinic acid conjugate (30) showed the most significant anti-influenza activity with an EC50 of 8.7 μM, and no cytotoxic effects on MDCK cells were observed. Time-of-addition assay indicated that compound 30 acted at an early stage of the influenza life cycle. Further analyses revealed that influenza virus-induced hemagglutination of chicken red blood cells was inhibited by treatment of compound 30, and the interaction between the influenza hemagglutinin (HA) and compound 30 was determined by surface plasmon resonance (SPR) with a dissociation constant of KD = 3.76 μM. Finally, silico docking studies indicated that compound 30 and its derivative 31 were able to occupy the binding pocket of HA for sialic acid receptor. Collectively, these results suggested that l-ascorbic acid-conjugated pentacyclic triterpenes were promising anti-influenza entry inhibitors, and HA protein associated with viral entry was a promising drug target.

  4. Structural and functional studies of a phosphatidic acid-binding antifungal plant defensin MtDef4: Identification of an RGFRRR motif governing fungal cell entry

    Energy Technology Data Exchange (ETDEWEB)

    Sagaram, Uma S.; El-Mounadi, Kaoutar; Buchko, Garry W.; Berg, Howard R.; Kaur, Jagdeep; Pandurangi, Raghoottama; Smith, Thomas J.; Shah, Dilip

    2013-12-04

    A highly conserved plant defensin MtDef4 potently inhibits the growth of a filamentous fungus Fusarium graminearum. MtDef4 is internalized by cells of F. graminearum. To determine its mechanism of fungal cell entry and antifungal action, NMR solution structure of MtDef4 has been determined. The analysis of its structure has revealed a positively charged patch on the surface of the protein consisting of arginine residues in its γ-core signature, a major determinant of the antifungal activity of MtDef4. Here, we report functional analysis of the RGFRRR motif of the γ-core signature of MtDef4. The replacement of RGFRRR to AAAARR or to RGFRAA not only abolishes fungal cell entry but also results in loss of the antifungal activity of MtDef4. MtDef4 binds strongly to phosphatidic acid (PA), a precursor for the biosynthesis of membrane phospholipids and a signaling lipid known to recruit cytosolic proteins to membranes. Mutations of RGFRRR which abolish fungal cell entry of MtDef4 also impair its binding to PA. Our results suggest that RGFRRR motif is a translocation signal for entry of MtDef4 into fungal cells and that this positively charged motif likely mediates interaction of this defensin with PA as part of its antifungal action.

  5. Journey describing the discoveries of anti-HIV triterpene acid families targeting HIV-entry/fusion, protease functioning and maturation stages.

    Science.gov (United States)

    Patel, Rahul V; Park, Se Won

    2014-01-01

    HIV infection/AIDS, is a fatal disease multiplying rapidly in virtually every country. Extensive creations are in progress to arrest the replication of the HIV, following the destruction of either particular step involved in the progression of HIV infection. In such endeavors, mechanistically more diverse antiviral therapies were showcased using naturally occurring triterpene acid and their derivatives acting at various stages of HIV life cycle like entry or fusion, function of HIV protease enzyme and finally at maturation. The present article holds an extensive step-by-step summary of anti-HIV breakthroughs of triterpene acid analogues and their derivatives with synthetic and activity aspects, featuring fertile clues for novel anti-HIV drug design, which helps to develop unprecedented opportunities to discover the next-generation anti- HIV armamentarium.

  6. Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

    NARCIS (Netherlands)

    Sali, Andrej; Berman, Helen M.; Schwede, Torsten; Trewhella, Jill; Kleywegt, Gerard; Burley, Stephen K.; Markley, John; Nakamura, Haruki; Adams, Paul; Bonvin, Alexandre M J J|info:eu-repo/dai/nl/113691238; Chiu, Wah; Peraro, Matteo Dal; Di Maio, Frank; Ferrin, Thomas E.; Grünewald, Kay; Gutmanas, Aleksandras; Henderson, Richard; Hummer, Gerhard; Iwasaki, Kenji; Johnson, Graham; Lawson, Catherine L.; Meiler, Jens; Marti-Renom, Marc A.; Montelione, Gaetano T.; Nilges, Michael; Nussinov, Ruth; Patwardhan, Ardan; Rappsilber, Juri; Read, Randy J.; Saibil, Helen; Schröder, Gunnar F.; Schwieters, Charles D.; Seidel, Claus A M; Svergun, Dmitri; Topf, Maya; Ulrich, Eldon L.; Velankar, Sameer; Westbrook, John D.

    2015-01-01

    Structures of biomolecular systems are increasingly computed by integrative modeling that relies on varied types of experimental data and theoretical information. We describe here the proceedings and conclusions from the first wwPDB Hybrid/Integrative Methods Task Force Workshop held at the European

  7. Web servers and services for electrostatics calculations with APBS and PDB2PQR.

    Science.gov (United States)

    Unni, Samir; Huang, Yong; Hanson, Robert M; Tobias, Malcolm; Krishnan, Sriram; Li, Wilfred W; Nielsen, Jens E; Baker, Nathan A

    2011-05-01

    APBS and PDB2PQR are widely utilized free software packages for biomolecular electrostatics calculations. Using the Opal toolkit, we have developed a Web services framework for these software packages that enables the use of APBS and PDB2PQR by users who do not have local access to the necessary amount of computational capabilities. This not only increases accessibility of the software to a wider range of scientists, educators, and students but also increases the availability of electrostatics calculations on portable computing platforms. Users can access this new functionality in two ways. First, an Opal-enabled version of APBS is provided in current distributions, available freely on the web. Second, we have extended the PDB2PQR web server to provide an interface for the setup, execution, and visualization of electrostatic potentials as calculated by APBS. This web interface also uses the Opal framework which ensures the scalability needed to support the large APBS user community. Both of these resources are available from the APBS/PDB2PQR website: http://www.poissonboltzmann.org/.

  8. TRIIODOTHYRONINE INCREASES MYOCARDIAL FUNCTION AND PYRUVATE ENTRY INTO THE CITRIC ACID CYCLE AFTER REPERFUSION IN A MODEL OF INFANT CARDIOPULMONARY BYPASS

    Energy Technology Data Exchange (ETDEWEB)

    Olson, Aaron; Bouchard, Bertrand; Ning, Xue-Han; Isern, Nancy G.; Des Rosiers, Christine; Portman, Michael A.

    2012-03-01

    We utilized a translational model of infant CPB to test the hypothesis that T3 modulates pyruvate entry into the citric acid cycle (CAC) thereby providing the energy support for improved cardiac function after ischemia-reperfusion. Methods and Results: Neonatal piglets received intracoronary [2-13Carbon(13C)]-pyruvate for 40 minutes (8 mM) during control aerobic conditions (Cont) or immediately after reperfusion (IR) from global hypothermic ischemia. A third group (IR-Tr) received T3 (1.2 ug/kg) during reperfusion. We assessed absolute CAC intermediate levels (aCAC) and flux parameters into the CAC through oxidative pyruvate decarboxylation (PDC ) and anaplerotic carboxylation (PC; ) using 13C-labeled pyruvate and isotopomer analysis by gas and liquid chromatography-mass spectrometry and 13C NMR. Neither IR nor IR-Tr modified aCAC. However, compared to IR, T3 (group IR-Tr) increased cardiac power and oxygen consumption after CPB while elevating both PDC and PC (~ four-fold). T3 inhibited IR induced reductions in CAC intermediate molar percent enrichment (MPE) and oxaloacetate(citrate)/malate MPE ratio; an index of aspartate entry into the CAC. Conclusions: T3 markedly enhances PC and PDC thereby providing substrate for elevated cardiac function and work after reperfusion. The increases in pyruvate flux occur with preservation of the CAC intermediate pool. Additionally, T3 inhibition of reductions in CAC intermediate MPEs indicates that T3 reduces the reliance on amino acids (AA) for anaplerosis after reperfusion. Thus, AA should be more available for other functions such as protein synthesis.

  9. Triiodothyronine increases myocardial function and pyruvate entry into the citric acid cycle after reperfusion in a model of infant cardiopulmonary bypass.

    Science.gov (United States)

    Olson, Aaron K; Bouchard, Bertrand; Ning, Xue-Han; Isern, Nancy; Rosiers, Christine Des; Portman, Michael A

    2012-03-01

    Triiodothyronine (T3) supplementation improves clinical outcomes in infants after cardiac surgery using cardiopulmonary bypass by unknown mechanisms. We utilized a translational model of infant cardiopulmonary bypass to test the hypothesis that T3 modulates pyruvate entry into the citric acid cycle (CAC), thereby providing the energy support for improved cardiac function after ischemia-reperfusion (I/R). Neonatal piglets received intracoronary [2-(13)Carbon((13)C)]pyruvate for 40 min (8 mM) during control aerobic conditions (control) or immediately after reperfusion (I/R) from global hypothermic ischemia. A third group (I/R-Tr) received T3 (1.2 μg/kg) during reperfusion. We assessed absolute CAC intermediate levels and flux parameters into the CAC through oxidative pyruvate decarboxylation (PDC) and anaplerotic carboxylation (PC) using [2-(13)C]pyruvate and isotopomer analysis by gas and liquid chromatography-mass spectrometry and (13)C-nuclear magnetic resonance spectroscopy. When compared with I/R, T3 (group I/R-Tr) increased cardiac power and oxygen consumption after I/R while elevating flux of both PDC and PC (∼4-fold). Although neither I/R nor I/R-Tr modified absolute CAC levels, T3 inhibited I/R-induced reductions in their molar percent enrichment. Furthermore, (13)C-labeling of CAC intermediates suggests that T3 may decrease entry of unlabeled carbons at the level of oxaloacetate through anaplerosis or exchange reaction with asparate. T3 markedly enhances PC and PDC fluxes, thereby providing potential substrate for elevated cardiac function after reperfusion. This T3-induced increase in pyruvate fluxes occurs with preservation of the CAC intermediate pool. Our labeling data raise the possibility that T3 reduces reliance on amino acids for anaplerosis after reperfusion.

  10. Rhodium-catalyzed addition of arylboronic acids to isatins : An entry to diversity in 3-aryl-3-hydroxyoxindoles

    NARCIS (Netherlands)

    Toullec, Patrick Y.; Jagt, Richard B. C.; de Vries, Johannes G.; Feringa, Ben L.; Minnaard, Adriaan J.

    2006-01-01

    A general method for the catalytic 1,2-addition of aryl and alkenyl boronic acids to isatins is described using a rhodium(I)/triphenylphosphite catalyst. The application of this transformation allows the synthesis of a variety of 3-aryl-3-hydroxyoxindole building blocks in high yields. An enantiosel

  11. LIBP-Pred: web server for lipid binding proteins using structural network parameters; PDB mining of human cancer biomarkers and drug targets in parasites and bacteria.

    Science.gov (United States)

    González-Díaz, Humberto; Munteanu, Cristian R; Postelnicu, Lucian; Prado-Prado, Francisco; Gestal, Marcos; Pazos, Alejandro

    2012-03-01

    Lipid-Binding Proteins (LIBPs) or Fatty Acid-Binding Proteins (FABPs) play an important role in many diseases such as different types of cancer, kidney injury, atherosclerosis, diabetes, intestinal ischemia and parasitic infections. Thus, the computational methods that can predict LIBPs based on 3D structure parameters became a goal of major importance for drug-target discovery, vaccine design and biomarker selection. In addition, the Protein Data Bank (PDB) contains 3000+ protein 3D structures with unknown function. This list, as well as new experimental outcomes in proteomics research, is a very interesting source to discover relevant proteins, including LIBPs. However, to the best of our knowledge, there are no general models to predict new LIBPs based on 3D structures. We developed new Quantitative Structure-Activity Relationship (QSAR) models based on 3D electrostatic parameters of 1801 different proteins, including 801 LIBPs. We calculated these electrostatic parameters with the MARCH-INSIDE software and they correspond to the entire protein or to specific protein regions named core, inner, middle, and surface. We used these parameters as inputs to develop a simple Linear Discriminant Analysis (LDA) classifier to discriminate 3D structure of LIBPs from other proteins. We implemented this predictor in the web server named LIBP-Pred, freely available at , along with other important web servers of the Bio-AIMS portal. The users can carry out an automatic retrieval of protein structures from PDB or upload their custom protein structural models from their disk created with LOMETS server. We demonstrated the PDB mining option performing a predictive study of 2000+ proteins with unknown function. Interesting results regarding the discovery of new Cancer Biomarkers in humans or drug targets in parasites have been discussed here in this sense.

  12. US Ports of Entry

    Data.gov (United States)

    Department of Homeland Security — HSIP Non-Crossing Ports-of-Entry A Port of Entry is any designated place at which a CBP officer is authorized to accept entries of merchandise to collect duties, and...

  13. RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank.

    Science.gov (United States)

    Quinn, Gregory B; Bi, Chunxiao; Christie, Cole H; Pang, Kyle; Prlić, Andreas; Nakane, Takanori; Zardecki, Christine; Voigt, Maria; Berman, Helen M; Bourne, Philip E; Rose, Peter W

    2015-01-01

    The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) resource provides tools for query, analysis and visualization of the 3D structures in the PDB archive. As the mobile Web is starting to surpass desktop and laptop usage, scientists and educators are beginning to integrate mobile devices into their research and teaching. In response, we have developed the RCSB PDB Mobile app for the iOS and Android mobile platforms to enable fast and convenient access to RCSB PDB data and services. Using the app, users from the general public to expert researchers can quickly search and visualize biomolecules, and add personal annotations via the RCSB PDB's integrated MyPDB service. RCSB PDB Mobile is freely available from the Apple App Store and Google Play (http://www.rcsb.org). © The Author 2014. Published by Oxford University Press.

  14. Arachidonic acid mediates non-capacitative calcium entry evoked by CB1-cannabinoid receptor activation in DDT1 MF-2 smooth muscle cells

    NARCIS (Netherlands)

    Demuth, D.G.; Gkoumassi, Effimia; Droge, M.J.; Dekkers, B.G.J.; Esselink, H.J.; van Ree, Rutger; Parsons, M.E.; Zaagsma, Hans; Molleman, A; Nelemans, Herman

    2005-01-01

    Cannabinoid CB1-receptor stimulation in DDT1 MF-2 smooth muscle cells induces a rise in [Ca2+](i), which is dependent on extracellular Ca2+ and modulated by thapsigargin-sensitive stores, suggesting capacitative Ca2+ entry (CCE), and by MAP kinase. Non-capacitative Ca2+ entry (NCCE) stimulated by ar

  15. PENGARUH INFLASI, SUKU BUNGA, KURS, DAN PERTUMBUHAN PDB TERHADAP INDEKS HARGA SAHAM GABUNGAN

    Directory of Open Access Journals (Sweden)

    Suramaya Suci Kewal

    2012-04-01

    Full Text Available Abstract: The Effect of Inflation, interest rate, exchange rate, and GDP growth Toward Indonesia Composite Index. This research aims to investigate empirically the effect of selected macroeconomic variables, i.e., inflation rate, Bank Indonesia Certificate rate, the exchange rate on IDR, and GDP growth on Indonesia Composite Index at The Indonesia Stock Exchanges (IDX. This paper examines the direct effect of selected macroeconomic variabel on Indonesia Composite Index. The paper employs a regression model analysis. The result indicates that only the exchange rate on IDR significantly effects to Indonesia Composite Index. The inflation rate, Bank Certificate rate, and GDP growth do not effect to Indonesia Composite Index. This research only covers four selected macroeconomic variables. Therefore, further research should examine other potential macroeconomic variables.   Keywords: macroeconomic variables, Indonesia Composite Index   Abstrak: Pengaruh Inflasi, Suku Bunga, Kurs, dan Pertumbuhan PDB Terhadap Indeks Harga Saham Gabungan. Penelitian ini bertujuan untuk meneliti secara empiris pengaruh variabel-variabel makroekonomi, yaitu : tingkat inflasi, suku bunga sertifikat Bank Indonesia, kurs, dan tingkat pertumbuhan GDP terhadap IHSG di Bursa Efek Indonesia. Teknik analisis yang digunakan adalah regresi berganda. Hasil penelitian menemukan bahwa hanya kurs yang berpengaruh secara signifikan terhadap IHSG, sedangkan tingkat inflasi, suku bunga SBI dan pertumbuhan PDB tidak berpengaruh terhadap IHSG. Penelitian ini hanya menggunakan empat variabel makroekonomi, sehingga penelitian selanjutnya perlu menemukan variabel makroekonomi lain yang diduga berpengaruh terhadap IHSG.   Kata kunci : variabel makroekonomi, IHSG.

  16. High-resolution structure of the M14-type cytosolic carboxypeptidase from Burkholderia cenocepacia refined exploiting PDB-REDO strategies

    Energy Technology Data Exchange (ETDEWEB)

    Rimsa, Vadim; Eadsforth, Thomas C. [University of Dundee, Dundee DD1 5EH, Scotland (United Kingdom); Joosten, Robbie P. [Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam (Netherlands); Hunter, William N., E-mail: w.n.hunter@dundee.ac.uk [University of Dundee, Dundee DD1 5EH, Scotland (United Kingdom)

    2014-02-01

    The structure of a bacterial M14-family carboxypeptidase determined exploiting microfocus synchrotron radiation and highly automated refinement protocols reveals its potential to act as a polyglutamylase. A potential cytosolic metallocarboxypeptidase from Burkholderia cenocepacia has been crystallized and a synchrotron-radiation microfocus beamline allowed the acquisition of diffraction data to 1.9 Å resolution. The asymmetric unit comprises a tetramer containing over 1500 amino acids, and the high-throughput automated protocols embedded in PDB-REDO were coupled with model–map inspections in refinement. This approach has highlighted the value of such protocols for efficient analyses. The subunit is constructed from two domains. The N-terminal domain has previously only been observed in cytosolic carboxypeptidase (CCP) proteins. The C-terminal domain, which carries the Zn{sup 2+}-containing active site, serves to classify this protein as a member of the M14D subfamily of carboxypeptidases. Although eukaryotic CCPs possess deglutamylase activity and are implicated in processing modified tubulin, the function and substrates of the bacterial family members remain unknown. The B. cenocepacia protein did not display deglutamylase activity towards a furylacryloyl glutamate derivative, a potential substrate. Residues previously shown to coordinate the divalent cation and that contribute to peptide-bond cleavage in related enzymes such as bovine carboxypeptidase are conserved. The location of a conserved basic patch in the active site adjacent to the catalytic Zn{sup 2+}, where an acetate ion is identified, suggests recognition of the carboxy-terminus in a similar fashion to other carboxypeptidases. However, there are significant differences that indicate the recognition of substrates with different properties. Of note is the presence of a lysine in the S1′ recognition subsite that suggests specificity towards an acidic substrate.

  17. Mildly Acidic pH Triggers an Irreversible Conformational Change in the Fusion Domain of Herpes Simplex Virus 1 Glycoprotein B and Inactivation of Viral Entry.

    Science.gov (United States)

    Weed, Darin J; Pritchard, Suzanne M; Gonzalez, Floricel; Aguilar, Hector C; Nicola, Anthony V

    2017-03-01

    Herpes simplex virus (HSV) entry into a subset of cells requires endocytosis and endosomal low pH. Preexposure of isolated virions to mildly acidic pH of 5 to 6 partially inactivates HSV infectivity in an irreversible manner. Acid inactivation is a hallmark of viruses that enter via low-pH pathways; this occurs by pretriggering conformational changes essential for fusion. The target and mechanism(s) of low-pH inactivation of HSV are unclear. Here, low-pH-treated HSV-1 was defective in fusion activity and yet retained normal levels of attachment to cell surface heparan sulfate and binding to nectin-1 receptor. Low-pH-triggered conformational changes in gB reported to date are reversible, despite irreversible low-pH inactivation. gB conformational changes and their reversibility were measured by antigenic analysis with a panel of monoclonal antibodies and by detecting changes in oligomeric conformation. Three-hour treatment of HSV-1 virions with pH 5 or multiple sequential treatments at pH 5 followed by neutral pH caused an irreversible >2.5 log infectivity reduction. While changes in several gB antigenic sites were reversible, alteration of the H126 epitope was irreversible. gB oligomeric conformational change remained reversible under all conditions tested. Altogether, our results reveal that oligomeric alterations and fusion domain changes represent distinct conformational changes in gB, and the latter correlates with irreversible low-pH inactivation of HSV. We propose that conformational change in the gB fusion domain is important for activation of membrane fusion during viral entry and that in the absence of a host target membrane, this change results in irreversible inactivation of virions.IMPORTANCE HSV-1 is an important pathogen with a high seroprevalence throughout the human population. HSV infects cells via multiple pathways, including a low-pH route into epithelial cells, the primary portal into the host. HSV is inactivated by low-pH preexposure, and gB, a

  18. Preliminary Classification of Army and Navy Entry-Level Occupations by the Holland Coding System.

    Science.gov (United States)

    1986-12-01

    96) Realistic =55% Realistic z56% RIS 3 RIS 3 RIE 22 RIE 21 RSE 5 RIC I RSC I RSE 4 RSI I REI I I REI 15 RES 10 RES 15 REC1 REC 2 RCE 3 RCI 1 54 RCS...HOLLAND-CODED ARMY ENTRY-LEVEL OCCUPATIONS PdB-0 dM.Mill UI Holland-Coded Army Entry-Level Occupations 1. Still Photographer RSE 2. Motion Picture...9. Practical Nurse SAI 10. Medical Lab Technician ISA 11. Orthotist RSE 12. Electrocardiograph Technician RCI 13. Optometric Assistant SCI 14

  19. FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB

    DEFF Research Database (Denmark)

    Wernersson, Rasmus; Rapacki, Krzysztof; Stærfeldt, Hans Henrik

    2006-01-01

    FeatureMap3D is a web-based tool that maps protein features onto 3D structures. The user provides sequences annotated with any feature of interest, such as post-translational modifications, protease cleavage sites or exonic structure and FeatureMap3D will then search the Protein Data Bank (PDB...... without sequence annotation, to evaluate the quality of the alignment of the input sequences to the most homologous structures in the PDB, through the sequence conservation colored 3D structure visualization tool. FeatureMap3D is available at: http://www.cbs.dtu.dk/services/FeatureMap3D/....

  20. A guest molecule-host cavity fitting algorithm to mine PDB for small molecule targets.

    Science.gov (United States)

    Byrem, William C; Armstead, Stephen C; Kobayashi, Shunji; Eckenhoff, Roderic G; Eckmann, David M

    2006-08-01

    Inhaled anesthetic molecule occupancy of a protein internal cavity depends in part on the volumes of the guest molecule and the host site. Current algorithms to determine volume and surface area of cavities in proteins whose structures have been determined and cataloged make no allowance for shape or small degrees of shape adjustment to accommodate a guest. We developed an algorithm to determine spheroid dimensions matching cavity volume and surface area and applied it to screen the cavities of 6,658 nonredundant structures stored in the Protein Data Bank (PDB) for potential targets of halothane (2-bromo-2-chloro-1,1,1-trifluoroethane). Our algorithm determined sizes of prolate and oblate spheroids matching dimensions of each cavity found. If those spheroids could accommodate halothane (radius 2.91 A) as a guest, we determined the packing coefficient. 394,766 total cavities were identified. Of 58,681 cavities satisfying the fit criteria for halothane, 11,902 cavities had packing coefficients in the range of 0.46-0.64. This represents 20.3% of cavities large enough to hold halothane, 3.0% of all cavities processed, and found in 2,432 protein structures. Our algorithm incorporates shape dependence to screen guest-host relationships for potential small molecule occupancy of protein cavities. Proteins with large numbers of such cavities are more likely to be functionally altered by halothane.

  1. DLMS Voice Data Entry.

    Science.gov (United States)

    1980-06-01

    between operator and computer displayed on ADM-3A 20c A-I Possible Hardware Configuration for a Multistation Cartographic VDES ...this program a Voice Recognition System (VRS) which can be used to explore the use of voice data entry ( VDE ) in the DIMS or other cartographic data...Multi-Station Cartographic Voice Data Entry System An engineering development model voice data entry system ( VDES ) could be most efficiently

  2. Entry at Venus

    Science.gov (United States)

    Venkatapathy, Ethiraj; Smith, Brandon

    2016-01-01

    This is lecture to be given at the IPPW 2016, as part of the 2 day course on Short Course on Destination Venus: Science, Technology and Mission Architectures. The attached presentation material is intended to be introduction to entry aspects of Venus in-situ robotic missions. The presentation introduces the audience to the aerodynamic and aerothermodynamic aspects as well as the loads, both aero and thermal, generated during entry. The course touches upon the system design aspects such as TPS design and both high and low ballistic coefficient entry system concepts that allow the science payload to be protected from the extreme entry environment and yet meet the mission objectives.

  3. Double entry bookkeeping vs single entry bookkeeping

    Directory of Open Access Journals (Sweden)

    Ileana Andreica

    2016-11-01

    Full Text Available Abstract: A financial management eficiently begin, primarily, with an accounting record kept in the best possible conditions, this being conditioned on the adoption of a uniform forms, rational, clear and simple accounting. Throughout history, there have been known two forms of accounting: the simple and double entry. Romanian society after 1990 underwent a substantial change in social structure, the sector on which put a great emphasis being private, that of small manufacturers, peddler, freelance, who work independently and authorized or as associative form (family enterprises, various associations (owners, tenants, etc., liberal professions, etc.. They are obliged to keep a simple bookkeeping, because they have no juridical personality. Companies with legal personality are required to keep double entry bookkeeping; therefore, knowledge and border demarcation between the two forms of organisation of accounting is an essential. The material used for this work is mainly represented by the financial and accounting documents, by the analysis of the economic, by legislative updated sources, and as the method was used the comparison method, using hypothetical data, in case of an authorized individual and a legal entity. Based on the chosen material, an authorized individual (who perform single entry accounting system and a juridical entity (who perform double entry accounting system were selected comparative case studies, using hypothetical data, were analysed advantages and disadvantages in term of fiscal, if using two accounting systems, then were highlighted some conclusion that result.

  4. Flavivirus cell entry and membrane fusion

    NARCIS (Netherlands)

    Smit, Jolanda M.; Moesker, Bastiaan; Rodenhuis-Zybert, Izabela; Wilschut, Jan

    2011-01-01

    Flaviviruses, such as dengue virus and West Nile virus, are enveloped viruses that infect cells through receptor-mediated endocytosis and fusion from within acidic endosomes. The cell entry process of flaviviruses is mediated by the viral E glycoprotein. This short review will address recent advance

  5. Flavivirus cell entry and membrane fusion

    NARCIS (Netherlands)

    Smit, Jolanda M.; Moesker, Bastiaan; Rodenhuis-Zybert, Izabela; Wilschut, Jan

    2011-01-01

    Flaviviruses, such as dengue virus and West Nile virus, are enveloped viruses that infect cells through receptor-mediated endocytosis and fusion from within acidic endosomes. The cell entry process of flaviviruses is mediated by the viral E glycoprotein. This short review will address recent advance

  6. The base-free chemoselective ring opening of epoxides with carboxylic acids using [bmim]Br: a rapid entry into 1,2-diol mono-esters synthesis.

    Science.gov (United States)

    Rad, Mohammad Navid Soltani; Behrouz, Somayeh

    2013-02-01

    A facile and highly convenient base-free protocol for the chemoselective preparation of 1,2-diol mono-esters is described. In this method, the regioselective ring opening of epoxides with carboxylic acids in the presence of [bmim]Br furnishes the corresponding 1,2-diol mono-esters in excellent yields. This method is efficient for various structurally diverse epoxides and carboxylic acids and it can be efficiently applied for the scale up synthesis of 1,2-diol mono-esters in reasonable to good yields. [bmim]Br remarkably influences the reaction progress and acts as both solvent and catalyst in this protocol.

  7. JET2 Viewer: a database of predicted multiple, possibly overlapping, protein–protein interaction sites for PDB structures

    Science.gov (United States)

    Ripoche, Hugues; Laine, Elodie; Ceres, Nicoletta; Carbone, Alessandra

    2017-01-01

    The database JET2 Viewer, openly accessible at http://www.jet2viewer.upmc.fr/, reports putative protein binding sites for all three-dimensional (3D) structures available in the Protein Data Bank (PDB). This knowledge base was generated by applying the computational method JET2 at large-scale on more than 20 000 chains. JET2 strategy yields very precise predictions of interacting surfaces and unravels their evolutionary process and complexity. JET2 Viewer provides an online intelligent display, including interactive 3D visualization of the binding sites mapped onto PDB structures and suitable files recording JET2 analyses. Predictions were evaluated on more than 15 000 experimentally characterized protein interfaces. This is, to our knowledge, the largest evaluation of a protein binding site prediction method. The overall performance of JET2 on all interfaces are: Sen = 52.52, PPV = 51.24, Spe = 80.05, Acc = 75.89. The data can be used to foster new strategies for protein–protein interactions modulation and interaction surface redesign. PMID:27899675

  8. Low temperature activation of methane over a zinc-exchanged heteropolyacid as an entry to its selective oxidation to methanol and acetic acid

    KAUST Repository

    Patil, Umesh

    2014-01-01

    A Zn-exchanged heteropolyacid supported onto silica (Zn-HPW/SiO2) activates methane at 25 °C into Zn-methyl. At higher temperatures and with CH4/O2 or CH4/CO2, it gives methanol and acetic acid respectively. This journal is

  9. Shuttle entry guidance

    Science.gov (United States)

    Harpold, J. C.; Graves, C. A., Jr.

    1978-01-01

    This paper describes the design of the entry guidance for the Space Shuttle Orbiter. This guidance provides the steering commands for trajectory control from initial penetration of the earth's atmosphere until the terminal area guidance is activated at an earth-relative speed of 2500 fps. At this point, the Orbiter is at a distance of about 50 nmi from the runway threshold, and at an altitude of about 80,000 ft. The entry guidance design is based on an analytic solution of the equations of motion defining the drag acceleration profile that meets the terminal criteria of the entry flight while maintaining the flight within systems and operational constraints. Guidance commands, which are based on a control law that ensures damping of oscillatory type trajectory motion, are computed to steer the Orbiter to this drag acceleration profile.

  10. Deployable Entry-system Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The Deployable Entry-system ProjecT (ADEPT) will develop requirements for the ADEPT flight test.  Prior entry systems used high mass thermal protection...

  11. Re-entry and simulation

    Science.gov (United States)

    Jian, H.; Guangming, X.

    1983-11-01

    The physics of re-entry are discussed with emphasis on the re-entry trajectory of a ballistic missile. Factors discussed include re-entry speed, ablation, aerodynamic heating, and the plasma sheath shield. Experimental techniques used to simulate the aerodynamics and performance of missile systems include the computer, the wind tunnel, and free flight. Each of these is briefly discussed.

  12. PRI-Modeler: extracting RNA structural elements from PDB files of protein-RNA complexes.

    Science.gov (United States)

    Han, Kyungsook; Nepal, Chirag

    2007-05-01

    A complete understanding of protein and RNA structures and their interactions is important for determining the binding sites in protein-RNA complexes. Computational approaches exist for identifying secondary structural elements in proteins from atomic coordinates. However, similar methods have not been developed for RNA, due in part to the very limited structural data so far available. We have developed a set of algorithms for extracting and visualizing secondary and tertiary structures of RNA and for analyzing protein-RNA complexes. These algorithms have been implemented in a web-based program called PRI-Modeler (protein-RNA interaction modeler). Given one or more protein data bank files of protein-RNA complexes, PRI-Modeler analyzes the conformation of the RNA, calculates the hydrogen bond (H bond) and van der Waals interactions between amino acids and nucleotides, extracts secondary and tertiary RNA structure elements, and identifies the patterns of interactions between the proteins and RNAs. This paper presents PRI-Modeler and its application to the hydrogen bond and van der Waals interactions in the most representative set of protein-RNA complexes. The analysis reveals several interesting interaction patterns at various levels. The information provided by PRI-Modeler should prove useful for determining the binding sites in protein-RNA complexes. PRI-Modeler is accessible at http://wilab.inha.ac.kr/primodeler/, and supplementary materials are available in the analysis results section at http://wilab.inha.ac.kr/primodeler/.

  13. Dynamics of Water Entry

    CERN Document Server

    Truscott, Tadd T; Techet, Alexandra H

    2008-01-01

    The hydrodynamics associated with water-entry of spheres can be highly variable with respect to the material and kinematic properties of the sphere. This series of five fluid dynamics videos illustrates several subtle but interesting variations that can be seen. The first series of videos contrasts the nature of impact ($Fr = U_o/\\sqrt{gd} = 5.15$) between a hydrophilic (wetting angle of $\\alpha$ = 60$^\\circ$) and hydrophobic sphere ($\\alpha$ = 120$^\\circ$), and illustrates how surface coating can affect whether or not an air cavity is formed; the views from the side and from above are synchronized in time. The second video series illustrates how spin and surface treatments can alter the splash and cavity formation following water entry. The spinning sphere ($S = \\omega r / U_o = 1.7$; $Fr = 5.15$) causes a wedge of fluid to be drawn into the cavity due to the no-slip condition and follows a curved trajectory. The non-spinning sphere ($Fr = 5.15$) has two distinct surface treatments on the left and right hemi...

  14. Lamiridosins, hepatitis C virus entry inhibitors from Lamium album.

    Science.gov (United States)

    Zhang, Hongjie; Rothwangl, Katharina; Mesecar, Andrew D; Sabahi, Ali; Rong, Lijun; Fong, Harry H S

    2009-12-01

    Phytochemical study of the aqueous extract of the flowering tops of Lamium album led to identification of the antiviral iridoid isomers lamiridosins A and B (1, 2). These compounds were found to significantly inhibit hepatitis C virus entry (IC(50) 2.31 muM) in vitro. Studies of 14 iridoid analogues showed that, while the parent iridoid glucosides demonstrated no anti-HCV entry activity, the aglycones of shanzhiside methyl ester (4), loganin (5), loganic acid (6), geniposide (10), verbenalin (12), eurostoside (15), and picroside II (17) exhibited significant anti-HCV entry and anti-infectivity activities.

  15. 19 CFR 142.17 - One entry summary for multiple entries.

    Science.gov (United States)

    2010-04-01

    ...; DEPARTMENT OF THE TREASURY (CONTINUED) ENTRY PROCESS Entry Summary Documentation § 142.17 One entry summary... for which entries or immediate transportation entries have been filed. However, this provision is not.... (ii) Immediate transportation entries. Immediate transportation entries may be consolidated if the...

  16. Membrane fusion during poxvirus entry.

    Science.gov (United States)

    Moss, Bernard

    2016-12-01

    Poxviruses comprise a large family of enveloped DNA viruses that infect vertebrates and invertebrates. Poxviruses, unlike most DNA viruses, replicate in the cytoplasm and encode enzymes and other proteins that enable entry, gene expression, genome replication, virion assembly and resistance to host defenses. Entry of vaccinia virus, the prototype member of the family, can occur at the plasma membrane or following endocytosis. Whereas many viruses encode one or two proteins for attachment and membrane fusion, vaccinia virus encodes four proteins for attachment and eleven more for membrane fusion and core entry. The entry-fusion proteins are conserved in all poxviruses and form a complex, known as the Entry Fusion Complex (EFC), which is embedded in the membrane of the mature virion. An additional membrane that encloses the mature virion and is discarded prior to entry is present on an extracellular form of the virus. The EFC is held together by multiple interactions that depend on nine of the eleven proteins. The entry process can be divided into attachment, hemifusion and core entry. All eleven EFC proteins are required for core entry and at least eight for hemifusion. To mediate fusion the virus particle is activated by low pH, which removes one or more fusion repressors that interact with EFC components. Additional EFC-interacting fusion repressors insert into cell membranes and prevent secondary infection. The absence of detailed structural information, except for two attachment proteins and one EFC protein, is delaying efforts to determine the fusion mechanism.

  17. Shuttle entry guidance revisited

    Science.gov (United States)

    Mease, Kenneth D.; Kremer, Jean-Paul

    1992-08-01

    The Shuttle entry guidance concept is reviewed which is aimed at tracking a reference drag trajectory that leads to the specified range and velocity for the initiation of the terminal energy management phase. An approximate method of constructing the domain of attraction is proposed, and its validity is ascertained by simulation. An alternative guidance law yielding global exponential tracking in the absence of control saturation is derived using a feedback linearization method. It is noted that the alternative guidance law does not improve on the stability and performance of the current guidance law, for the operating domain and control capability of the Shuttle. It is suggested that the new guidance law with a larger operating domain and increased lift-to-drag capability would be superior.

  18. Shuttle entry guidance revisited

    Science.gov (United States)

    Mease, Kenneth D.; Kremer, Jean-Paul

    1992-01-01

    The Shuttle entry guidance concept is reviewed which is aimed at tracking a reference drag trajectory that leads to the specified range and velocity for the initiation of the terminal energy management phase. An approximate method of constructing the domain of attraction is proposed, and its validity is ascertained by simulation. An alternative guidance law yielding global exponential tracking in the absence of control saturation is derived using a feedback linearization method. It is noted that the alternative guidance law does not improve on the stability and performance of the current guidance law, for the operating domain and control capability of the Shuttle. It is suggested that the new guidance law with a larger operating domain and increased lift-to-drag capability would be superior.

  19. Water Entry of Projectiles

    Science.gov (United States)

    Truscott, Tadd T.; Epps, Brenden P.; Belden, Jesse

    2014-01-01

    The free-surface impact of solid objects has been investigated for well over a century. This canonical problem is influenced by many physical parameters, including projectile geometry, material properties, fluid properties, and impact parameters. Through advances in high-speed imaging and visualization techniques, discoveries about the underlying physics have improved our understanding of these phenomena. Improvements to analytical and numerical models have led to critical insights into cavity formation, the depth and time of pinch-off, forces, and trajectories for myriad different impact parameters. This topic spans a wide range of regimes, from low-speed entry phenomena dominated by surface tension to high-speed ballistics, for which cavitation is important. This review surveys experimental, theoretical, and numerical studies over this broad range, utilizing canonical images where possible to enhance intuition and insight into the rich phenomena.

  20. Ectoine and 5-hydroxyectoine accumulation in the halophile Virgibacillus halodenitrificans PDB-F2 in response to salt stress.

    Science.gov (United States)

    Tao, Ping; Li, Hui; Yu, Yunjiang; Gu, Jidong; Liu, Yongdi

    2016-08-01

    The moderately halophilic bacterium Virgibacillus halodenitrificans PDB-F2 copes with salinity by synthesizing or taking up compatible solutes. The main compatible solutes in this strain were ectoine and hydroxyectoine, as determined by (1)H nuclear magnetic resonance spectroscopy ((1)H-NMR). A high-performance liquid chromatography (HPLC) analysis showed that ectoine was the major solute that was synthesized in response to elevated salinity, while hydroxyectoine was a minor solute. However, the hydroxyectoine/ectoine ratio increased from 0.04 at 3 % NaCl to 0.45 at 15 % NaCl in the late exponential growth phase. A cluster of ectoine biosynthesis genes was identified, including three genes in the order of ectA, ectB, and ectC. The hydroxyectoine biosynthesis gene ectD was not part of the ectABC gene cluster. Reverse transcription-quantitative polymerase chain reactions (RT-qPCR) showed that the expression of the ect genes was salinity dependent. The expression of ectABC reached a maximum at 12 % NaCl, while ectD expression increased up to 15 % NaCl. Ectoine and hydroxyectoine production was growth phase dependent. The hydroxyectoine/ectoine ratio increased from 0.018 in the early exponential phase to 0.11 in the stationary phase at 5 % NaCl. Hydroxyectoine biosynthesis started much later than ectoine biosynthesis after osmotic shock, and the temporal expression of the ect genes differed under these conditions, with the ectABC genes being expressed first, followed by ectD gene. Increased culture salinity triggered ectoine or hydroxyectoine uptake when they were added to the medium. Hydroxyectoine was accumulated preferentially when both ectoine and hydroxyectoine were provided exogenously.

  1. Small-molecule inhibitors of dengue-virus entry.

    Directory of Open Access Journals (Sweden)

    Aaron G Schmidt

    Full Text Available Flavivirus envelope protein (E mediates membrane fusion and viral entry from endosomes. A low-pH induced, dimer-to-trimer rearrangement and reconfiguration of the membrane-proximal "stem" of the E ectodomain draw together the viral and cellular membranes. We found stem-derived peptides from dengue virus (DV bind stem-less E trimer and mimic the stem-reconfiguration step in the fusion pathway. We adapted this experiment as a high-throughput screen for small molecules that block peptide binding and thus may inhibit viral entry. A compound identified in this screen, 1662G07, and a number of its analogs reversibly inhibit DV infectivity. They do so by binding the prefusion, dimeric E on the virion surface, before adsorption to a cell. They also block viral fusion with liposomes. Structure-activity relationship studies have led to analogs with submicromolar IC₉₀s against DV2, and certain analogs are active against DV serotypes 1,2, and 4. The compounds do not inhibit the closely related Kunjin virus. We propose that they bind in a previously identified, E-protein pocket, exposed on the virion surface and although this pocket is closed in the postfusion trimer, its mouth is fully accessible. Examination of the E-trimer coordinates (PDB 1OK8 shows that conformational fluctuations around the hinge could open the pocket without dissociating the trimer or otherwise generating molecular collisions. We propose that compounds such as 1662G07 trap the sE trimer in a "pocket-open" state, which has lost affinity for the stem peptide and cannot support the final "zipping up" of the stem.

  2. A development of chimeric VEGFR2 TK inhibitor based on two ligand conformers from PDB: 1Y6A complex--medicinal chemistry consequences of a TKs analysis.

    Science.gov (United States)

    Lintnerová, Lucia; García-Caballero, Melissa; Gregáň, Fridrich; Melicherčík, Milan; Quesada, Ana R; Dobiaš, Juraj; Lác, Ján; Sališová, Marta; Boháč, Andrej

    2014-01-24

    VEGFR2 is an important mediator of angiogenesis and influences fate of some cancer stem cells. Here we analysed all 34 structures of VEGFR2 TK available from PDB database. From them a complex PDB: 1Y6A has an exceptional AAZ ligand bound to TK in form of two conformers (U- and S-shaped). This observation inspired us to develop three chimeric bispyridyl VEGFR2 inhibitors by combining structural features of both AAZ conformers and/or their relative ligand AAX (PDB: 1Y6B). Our most interesting inhibitor 22SYM has an enzymatic VEGFR2 TK activity (IC50: 15.1 nM) comparable or better to the active compounds from clinical drugs Nexavar and Sutent. 22SYM inhibits growth, migration and tube formation of endothelial cells (EC) and selectively induces EC apoptosis. 22SYM also inhibits in vivo angiogenesis in Zebrafish embryo assay. Additionally to the above results, we proved here that tyrosine kinases in an inactive form possessing Type I inhibitors can adopt both a closed or an opened conformation of kinase A-loop independently on their DFG-out arrangement. We proposed here that an activity of certain Type I inhibitors (e.g. 22SYM-like) in complex with DFG-out TK can be negatively influenced by collisions with a dynamically moving TK A-loop.

  3. The PDB database is a rich source of alpha-helical anti-microbial peptides to combat disease causing pathogens [version 2; referees: 2 approved, 1 approved with reservations

    Directory of Open Access Journals (Sweden)

    Sandeep Chakraborty

    2015-06-01

    Full Text Available The therapeutic potential of α-helical anti-microbial peptides (AH-AMP to combat pathogens is fast gaining prominence. Based on recently published open access software for characterizing α-helical peptides (PAGAL, we elucidate a search methodology (SCALPEL that leverages the massive structural data pre-existing in the PDB database to obtain AH-AMPs belonging to the host proteome. We provide in vitro validation of SCALPEL on plant pathogens (Xylella fastidiosa, Xanthomonas arboricola and Liberibacter crescens by identifying AH-AMPs that mirror the function and properties of cecropin B, a well-studied AH-AMP. The identified peptides include a linear AH-AMP present within the existing structure of phosphoenolpyruvate carboxylase (PPC20, and an AH-AMP mimicing the properties of the two α-helices of cecropin B from chitinase (CHITI25. The minimum inhibitory concentration of these peptides are comparable to that of cecropin B, while anionic peptides used as control failed to show any inhibitory effect on these pathogens. Substitute therapies in place of conventional chemotherapies using membrane permeabilizing peptides like these might also prove effective to target cancer cells. The use of native structures from the same organism could possibly ensure that administration of such peptides will be better tolerated and not elicit an adverse immune response. We suggest a similar approach to target Ebola epitopes, enumerated using PAGAL recently, by selecting suitable peptides from the human proteome, especially in wake of recent reports of cationic amphiphiles inhibiting virus entry and infection.

  4. Tactile Data Entry System Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Building on our successful Phase I Tactile Data Entry program, Barron Associates proposes development of a Glove-Enabled Computer Operations (GECO) system to permit...

  5. Entry, Descent, Landing Animation (Animation)

    Science.gov (United States)

    2005-01-01

    [figure removed for brevity, see original site] Click on the image for Entry, Descent, Landing animation This animation illustrates the path the Stardust return capsule will follow once it enters Earth's atmosphere.

  6. Entry, Descent, Landing Animation (Animation)

    Science.gov (United States)

    2005-01-01

    [figure removed for brevity, see original site] Click on the image for Entry, Descent, Landing animation This animation illustrates the path the Stardust return capsule will follow once it enters Earth's atmosphere.

  7. Orion Entry Handling Qualities Assessments

    Science.gov (United States)

    Bihari, B.; Tiggers, M.; Strahan, A.; Gonzalez, R.; Sullivan, K.; Stephens, J. P.; Hart, J.; Law, H., III; Bilimoria, K.; Bailey, R.

    2011-01-01

    The Orion Command Module (CM) is a capsule designed to bring crew back from the International Space Station (ISS), the moon and beyond. The atmospheric entry portion of the flight is deigned to be flown in autopilot mode for nominal situations. However, there exists the possibility for the crew to take over manual control in off-nominal situations. In these instances, the spacecraft must meet specific handling qualities criteria. To address these criteria two separate assessments of the Orion CM s entry Handling Qualities (HQ) were conducted at NASA s Johnson Space Center (JSC) using the Cooper-Harper scale (Cooper & Harper, 1969). These assessments were conducted in the summers of 2008 and 2010 using the Advanced NASA Technology Architecture for Exploration Studies (ANTARES) six degree of freedom, high fidelity Guidance, Navigation, and Control (GN&C) simulation. This paper will address the specifics of the handling qualities criteria, the vehicle configuration, the scenarios flown, the simulation background and setup, crew interfaces and displays, piloting techniques, ratings and crew comments, pre- and post-fight briefings, lessons learned and changes made to improve the overall system performance. The data collection tools, methods, data reduction and output reports will also be discussed. The objective of the 2008 entry HQ assessment was to evaluate the handling qualities of the CM during a lunar skip return. A lunar skip entry case was selected because it was considered the most demanding of all bank control scenarios. Even though skip entry is not planned to be flown manually, it was hypothesized that if a pilot could fly the harder skip entry case, then they could also fly a simpler loads managed or ballistic (constant bank rate command) entry scenario. In addition, with the evaluation set-up of multiple tasks within the entry case, handling qualities ratings collected in the evaluation could be used to assess other scenarios such as the constant bank angle

  8. Currency union entries and trade

    OpenAIRE

    Nitsch, Volker

    2005-01-01

    Recent research suggests that adopting a common currency increases bilateral trade. In this paper, I explore experiences of currency union entry in the post-war period and find no effect on trade. Previous results derived from a large panel data set (covering more than 200 countries from 1948 through 1997) appear to depend crucially on the assumption of symmetry between currency union exits and entries: While countries leaving a currency union experience significant declines in trade, currenc...

  9. Inhibition of influenza H7 hemagglutinin-mediated entry.

    Directory of Open Access Journals (Sweden)

    Aleksandar Antanasijevic

    Full Text Available The recent outbreak of H7N9 influenza in China is of high concern to public health. H7 hemagglutinin (HA plays a critical role in influenza entry and thus HA presents an attractive target for antivirals. Previous studies have suggested that the small molecule tert-butyl hydroquinone (TBHQ inhibits the entry of influenza H3 HA by binding to the stem loop of HA and stabilizing the neutral pH conformation of HA, thereby disrupting the membrane fusion step. Based on amino acid sequence, structure and immunogenicity, H7 is a related Group 2 HA. In this work we show, using a pseudovirus entry assay, that TBHQ inhibits H7 HA-mediated entry, as well as H3 HA-mediated entry, with an IC50 ~ 6 µM. Using NMR, we show that TBHQ binds to the H7 stem loop region. STD NMR experiments indicate that the aromatic ring of TBHQ makes extensive contact with the H7 HA surface. Limited proteolysis experiments indicate that TBHQ inhibits influenza entry by stabilizing the H7 HA neutral pH conformation. Together, this work suggests that the stem loop region of H7 HA is an attractive target for therapeutic intervention and that TBHQ, which is a widely used food preservative, is a promising lead compound.

  10. 19 CFR 191.143 - Drawback entry.

    Science.gov (United States)

    2010-04-01

    ... (CONTINUED) DRAWBACK Foreign-Built Jet Aircraft Engines Processed in the United States § 191.143 Drawback entry. (a) Filing of entry. Drawback entries covering these foreign-built jet aircraft engines shall be filed on Customs Form 7551, modified to show that the entry covers jet aircraft engines processed...

  11. 19 CFR 142.16 - Entry summary documentation.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Entry summary documentation. 142.16 Section 142.16... TREASURY (CONTINUED) ENTRY PROCESS Entry Summary Documentation § 142.16 Entry summary documentation. (a) Entry summary not filed at time of entry. When the entry documentation is filed before the entry...

  12. Autonomous gliding entry guidance with

    Directory of Open Access Journals (Sweden)

    Guo Jie

    2015-10-01

    Full Text Available This paper presents a novel three-dimensional autonomous entry guidance for relatively high lift-to-drag ratio vehicles satisfying geographic constraints and other path constraints. The guidance is composed of onboard trajectory planning and robust trajectory tracking. For trajectory planning, a longitudinal sub-planner is introduced to generate a feasible drag-versus-energy profile by using the interpolation between upper boundary and lower boundary of entry corridor to get the desired trajectory length. The associated magnitude of the bank angle can be specified by drag profile, while the sign of bank angle is determined by lateral sub-planner. Two-reverse mode is utilized to satisfy waypoint constraints and dynamic heading error corridor is utilized to satisfy no-fly zone constraints. The longitudinal and lateral sub-planners are iteratively employed until all of the path constraints are satisfied. For trajectory tracking, a novel tracking law based on the active disturbance rejection control is introduced. Finally, adaptability tests and Monte Carlo simulations of the entry guidance approach are performed. Results show that the proposed entry guidance approach can adapt to different entry missions and is able to make the vehicle reach the prescribed target point precisely in spite of geographic constraints.

  13. Reconstruction of the Genesis Entry

    Science.gov (United States)

    Desai, Prasun N.; Qualls, Garry D.; Schoenenberger, Mark

    2007-01-01

    An overview of the reconstruction analyses performed for the Genesis capsule entry is described. The results indicate that the actual entry prior to the drogue deployment failure was very close to the pre-entry predictions. The capsule landed 8.3 km south of the desired target at Utah Test and Training Range. Analysis on infrared video footage (obtained from the tracking stations) during the descent estimated the onset of the capsule tumble at Mach 0.9. Frequency analysis on the infrared video data indicates that the aerodynamics generated for the Genesis capsule reasonably predicted the drag and static stability. Observations of the heatshield support the pre-entry simulation estimates of a small hypersonic angles-of-attack, since there is very little, if any, charring of the shoulder region or the aftbody. Through this investigation, an overall assertion can be made that all the data gathered from the Genesis entry is consistent with flight performance that was close to the nominal preentry prediction. Consequently, the design principles and methodologies utilized for the flight dynamics, aerodynamics, and aerothermodynamics analyses have been corroborated.

  14. Membongkar Akuntansi Double Entry Systems

    Directory of Open Access Journals (Sweden)

    Whedy Prasetyo

    2013-08-01

    Full Text Available Double entry isa process of recording transactions that always involve at least two accounts ofwhich changes (increases or decreases have consequences to maintain a balance equation. This is a simple basic accounting, that the use of the funds must alwaysbe equal to the acquisition of funds. The equation is not able to include some business events that are responses to the development of business environment. A proposed view is based on the interaction of researcher (New Bond with accountant (Mrs M to dismantle the double entry accounting through Maurice Merleau Ponty's approach (1906-1961. The results prove that physical aspects of knowledge willcontinue to evolve according to environmental interactions.

  15. Characterization of hepatitis C virus recombinants with chimeric E1/E2 envelope proteins and identification of single amino acids in the E2 stem region important for entry

    DEFF Research Database (Denmark)

    Carlsen, Thomas H R; Scheel, Troels K H; Ramirez, Santseharay

    2013-01-01

    The hepatitis C virus (HCV) envelope proteins E1 and E2 play a key role in host cell entry and represent important targets for vaccine and drug development. Here, we characterized HCV recombinants with chimeric E1/E2 complexes in vitro. Using genotype 1a/2a JFH1-based recombinants expressing 1a...... in particle density. In addition, the 1b-E2 exchange led to a decrease in secreted core protein of 25 to 50%, which was further reduced by the E2 stem region mutations. These findings indicated that compensatory mutations permitted robust infectious virus production, without increasing assembly...

  16. Re-entry flight clearance

    NARCIS (Netherlands)

    Juliana, S.

    2006-01-01

    The objective of the research was to identify and evaluate promising mathematical techniques for re-entry flight clearance. To fulfil this objective, two mathematical methods were investigated and developed: μ analysis for linear models and interval analysis for both linear and non-linear model

  17. Components of Visual Prior Entry

    Science.gov (United States)

    Schneider, Keith A.; Bavelier, Daphne

    2003-01-01

    The prior entry hypothesis contends that attention accelerates sensory processing, shortening the time to perception. Typical observations supporting the hypothesis may be explained equally well by response biases, changes in decision criteria, or sensory facilitation. In a series of experiments conducted to discriminate among the potential…

  18. Entry Facilitation by Environmental Groups

    NARCIS (Netherlands)

    van der Made, Allard; Schoonbeek, Lambert

    We consider a model of vertical product differentiation where consumers care about the environmental damage their consumption causes. An environmental group is capable of increasing consumers' environmental concern via a costly campaign. We show that the prospect of such a campaign can induce entry

  19. Entry Facilitation by Environmental Groups

    NARCIS (Netherlands)

    van der Made, Allard; Schoonbeek, Lambert

    2009-01-01

    We consider a model of vertical product differentiation where consumers care about the environmental damage their consumption causes. An environmental group is capable of increasing consumers' environmental concern via a costly campaign. We show that the prospect of such a campaign can induce entry

  20. 19 CFR 142.3a - Entry numbers.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Entry numbers. 142.3a Section 142.3a Customs... (CONTINUED) ENTRY PROCESS Entry Documentation § 142.3a Entry numbers. (a) Placement on CBP forms. The importer or broker shall place an 11 character entry number on the entry and corresponding entry...

  1. Bi-weekly waterfowl survey data entry

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Data sheet for the entry of bi-weekly waterfowl survey data from the state of Kansas. This Excel file contains the data entry sheet and a chart displaying waterfowl...

  2. Amino acid differences in glycoproteins B (gB, C (gC, H (gH and L(gL are associated with enhanced herpes simplex virus type-1 (McKrae entry via the paired immunoglobulin-like type-2 receptor α

    Directory of Open Access Journals (Sweden)

    Chowdhury Sona

    2012-06-01

    Full Text Available Abstract Background Herpes simplex virus type-1 (HSV-1 enters into cells via membrane fusion of the viral envelope with plasma or endosomal membranes mediated by viral glycoproteins. HSV-1 virions attach to cell surfaces by binding of viral glycoproteins gC, gD and gB to specific cellular receptors. Here we show that the human ocular and highly neurovirulent HSV-1 strain McKrae enters substantially more efficiently into cells via the gB-specific human paired immunoglobulin-like type-2 receptor-α (hPILR-α. Comparison of the predicted amino acid sequences between HSV-1(F and McKrae strains indicates that amino acid changes within gB, gC, gH and gL may cause increased entry via the hPILR- α receptor. Results HSV-1 (McKrae entered substantially more efficiently than viral strain F in Chinese hamster ovary (CHO cells expressing hPIRL-α but not within CHO-human nectin-1, -(CHO-hNectin-1, CHO-human HVEM (CHO-hHVEM or Vero cells. The McKrae genes encoding viral glycoproteins gB, gC, gD, gH, gL, gK and the membrane protein UL20 were sequenced and their predicted amino acid (aa sequences were compared with virulent strains F, H129, and the attenuated laboratory strain KOS. Most aa differences between McKrae and F were located at their gB amino termini known to bind with the PILRα receptor. These aa changes included a C10R change, also seen in the neurovirulent strain ANG, as well as redistribution and increase of proline residues. Comparison of gC aa sequences revealed multiple aa changes including an L132P change within the 129-247 aa region known to bind to heparan sulfate (HS receptors. Two aa changes were located within the H1 domain of gH that binds gL. Multiple aa changes were located within the McKrae gL sequence, which were preserved in the H129 isolate, but differed for the F strain. Viral glycoproteins gD and gK and the membrane protein UL20 were conserved between McKrae and F strains. Conclusions The results indicate that the observed

  3. Flavivirus Entry Receptors: An Update

    Directory of Open Access Journals (Sweden)

    Manuel Perera-Lecoin

    2013-12-01

    Full Text Available Flaviviruses enter host cells by endocytosis initiated when the virus particles interact with cell surface receptors. The current model suggests that flaviviruses use at least two different sets of molecules for infectious entry: attachment factors that concentrate and/or recruit viruses on the cell surface and primary receptor(s that bind to virions and direct them to the endocytic pathway. Here, we present the currently available knowledge regarding the flavivirus receptors described so far with specific attention to C-type lectin receptors and the phosphatidylserine receptors, T-cell immunoglobulin and mucin domain (TIM and TYRO3, AXL and MER (TAM. Their role in flavivirus attachment and entry as well as their implication in the virus biology will be discussed in depth.

  4. 19 CFR 122.42 - Aircraft entry.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 1 2010-04-01 2010-04-01 false Aircraft entry. 122.42 Section 122.42 Customs Duties U.S. CUSTOMS AND BORDER PROTECTION, DEPARTMENT OF HOMELAND SECURITY; DEPARTMENT OF THE TREASURY AIR COMMERCE REGULATIONS Aircraft Entry and Entry Documents; Electronic Manifest Requirements...

  5. Sunk costs, entry deterrence, and financial constraints

    NARCIS (Netherlands)

    Arping, S.; Diaw, K.M.

    2008-01-01

    This paper studies how sunk costs affect a financially constrained incumbent's ability to deter entry into its market. Sunk costs make it less attractive to the incumbent to accommodate entry by liquidating assets in place and exiting the market. This may render entry by a prospective rival

  6. Sport entries and qualification manual: Nanjing 2014

    OpenAIRE

    2014-01-01

    Sport entries constitute an important part of the delegation registration process of the Nanjing 2014 Summer Youth Olympic Games. This manual aims to introduce to NOCs the process, relevant policies and requirements regarding sport entries so as to ensure that NOCs can successfully complete the entries for their athletes to the Nanjing 2014 Youth Olympic Games.

  7. 19 CFR 143.36 - Form of immediate delivery, entry and entry summary.

    Science.gov (United States)

    2010-04-01

    ... Form of immediate delivery, entry and entry summary. (a) Electronic form of data. If Customs determines... 19 Customs Duties 2 2010-04-01 2010-04-01 false Form of immediate delivery, entry and entry summary. 143.36 Section 143.36 Customs Duties U.S. CUSTOMS AND BORDER PROTECTION, DEPARTMENT OF...

  8. Atmospheric Entry Experiments at IRS

    Science.gov (United States)

    Auweter-Kurtz, M.; Endlich, P.; Herdrich, G.; Kurtz, H.; Laux, T.; Löhle, S.; Nazina, N.; Pidan, S.

    2002-01-01

    Entering the atmosphere of celestial bodies, spacecrafts encounter gases at velocities of several km/s, thereby being subjected to great heat loads. The thermal protection systems and the environment (plasma) have to be investigated by means of computational and ground facility based simulations. For more than a decade, plasma wind tunnels at IRS have been used for the investigation of TPS materials. Nevertheless, ground tests and computer simulations cannot re- place space flights completely. Particularly, entry mission phases encounter challenging problems, such as hypersonic aerothermodynamics. Concerning the TPS, radiation-cooled materials used for reuseable spacecrafts and ablator tech- nologies are of importance. Besides the mentioned technologies, there is the goal to manage guidance navigation, con- trol, landing technology and inflatable technologies such as ballutes that aim to keep vehicles in the atmosphere without landing. The requirement to save mass and energy for planned interplanetary missions such as Mars Society Balloon Mission, Mars Sample Return Mission, Mars Express or Venus Sample Return mission led to the need for manoeuvres like aerocapture, aero-breaking and hyperbolic entries. All three are characterized by very high kinetic vehicle energies to be dissipated by the manoeuvre. In this field flight data are rare. The importance of these manoeuvres and the need to increase the knowledge of required TPS designs and behavior during such mission phases point out the need of flight experiments. As result of the experience within the plasma diagnostic tool development and the plasma wind tunnel data base, flight experiments like the PYrometric RE-entry EXperiment PYREX were developed, fully qualified and successfully flown. Flight experiments such as the entry spectrometer RESPECT and PYREX on HOPE-X are in the conceptual phase. To increase knowledge in the scope of atmospheric manoeuvres and entries, data bases have to be created combining both

  9. Matrix Completion from Noisy Entries

    CERN Document Server

    Keshavan, Raghunandan H; Oh, Sewoong

    2009-01-01

    Given a matrix M of low-rank, we consider the problem of reconstructing it from noisy observations of a small, random subset of its entries. The problem arises in a variety of applications, from collaborative filtering (the `Netflix problem') to structure-from-motion and positioning. We study a low complexity algorithm introduced by Keshavan et al.(2009), based on a combination of spectral techniques and manifold optimization, that we call here OptSpace. We prove performance guarantees that are order-optimal in a number of circumstances.

  10. Potent D-Peptide Inhibitors of HIV-1 Entry

    Energy Technology Data Exchange (ETDEWEB)

    Welch,B.; VanDemark, A.; Heroux, A.; Hill, C.; Kay, M.

    2007-01-01

    During HIV-1 entry, the highly conserved gp41 N-trimer pocket region becomes transiently exposed and vulnerable to inhibition. Using mirror-image phage display and structure-assisted design, we have discovered protease-resistant D-amino acid peptides (D-peptides) that bind the N-trimer pocket with high affinity and potently inhibit viral entry. We also report high-resolution crystal structures of two of these D-peptides in complex with a pocket mimic that suggest sources of their high potency. A trimeric version of one of these peptides is the most potent pocket-specific entry inhibitor yet reported by three orders of magnitude (IC50 = 250 pM). These results are the first demonstration that D-peptides can form specific and high-affinity interactions with natural protein targets and strengthen their promise as therapeutic agents. The D-peptides described here address limitations associated with current L-peptide entry inhibitors and are promising leads for the prevention and treatment of HIV/AIDS.

  11. Crystal structure and ligand affinity of avidin in the complex with 4‧-hydroxyazobenzene-2-carboxylic acid

    Science.gov (United States)

    Strzelczyk, Paweł; Bujacz, Grzegorz

    2016-04-01

    Avidin is a protein found in egg white that binds numerous organic compounds with high affinity, especially biotin and its derivatives. Due to its extraordinary affinity for its ligands, avidin is extensively used in biotechnology. X-ray crystallography and fluorescence-based biophysical techniques were used to show that avidin binds the dye 4‧-hydroxyazobenzene-2-carboxylic acid (HABA) with a lower affinity than biotin. The apparent dissociation constant determined for the avidin complex with HABA by microscale thermophoresis (MST) is 4.12 μM. The crystal structure of avidin-HABA complex was determined at a resolution of 2.2 Å (PDB entry 5chk). The crystals belong to a hexagonal system, in the space group P6422. In that structure, the hydrazone tautomer of HABA is bound at the bottom part of the central calyx near the polar residues. We show interactions of the dye with avidin and compare them with the previously reported avidin-biotin complex.

  12. Endocytic Pathways Involved in Filovirus Entry: Advances, Implications and Future Directions

    Directory of Open Access Journals (Sweden)

    Suchita Bhattacharyya

    2012-12-01

    Full Text Available Detailed knowledge of the host-virus interactions that accompany filovirus entry into cells is expected to identify determinants of viral virulence and host range, and to yield targets for the development of antiviral therapeutics. While it is generally agreed that filovirus entry into the host cytoplasm requires viral internalization into acidic endosomal compartments and proteolytic cleavage of the envelope glycoprotein by endo/lysosomal cysteine proteases, our understanding of the specific endocytic pathways co-opted by filoviruses remains limited. This review addresses the current knowledge on cellular endocytic pathways implicated in filovirus entry, highlights the consensus as well as controversies, and discusses important remaining questions.

  13. Adaptive Text Entry for Mobile Devices

    DEFF Research Database (Denmark)

    Proschowsky, Morten Smidt

    for mobile devices and a framework for adaptive context-aware language models. Based on analysis of current text entry methods, the requirements to the new text entry methods are established. Transparent User guided Prediction (TUP) is a text entry method for devices with one dimensional touch input. It can......The reduced size of many mobile devices makes it difficult to enter text with them. The text entry methods are often slow or complicated to use. This affects the performance and user experience of all applications and services on the device. This work introduces new easy-to-use text entry methods...... to improve the models of human motor behaviour. TUP-Key is a variant of TUP, designed for 12 key phone keyboards. It is introduced in the thesis but has not been implemented or evaluated. Both text entry methods support adaptive context-aware language models. YourText is a framework for adaptive context...

  14. Preventing re-entry to foster care.

    Science.gov (United States)

    Carnochan, Sarah; Rizik-Baer, Daniel; Austin, Michael J

    2013-01-01

    Re-entry to foster care generally refers to circumstances in which children who have been discharged from foster care to be reunified with their family of origin, adopted, or provided kinship guardianship are returned to foster care. In the context of the federal performance measurement system, re-entry refers specifically to a return to foster care following an unsuccessful reunification. The federal Children and Family Services Review measures re-entry to foster care with a single indicator, called the permanency of reunification indicator, one of four indicators comprising the reunification composite measure. This review focuses on research related to the re-entry indicator, including the characteristics of children, caregivers and families, as well as case and child welfare services that are associated with a higher or lower risk of re-entry to foster care. Promising post-reunification services designed to prevent re-entry to foster care are described.

  15. Realistic sampling of amino acid geometries for a multipolar polarizable force field.

    Science.gov (United States)

    Hughes, Timothy J; Cardamone, Salvatore; Popelier, Paul L A

    2015-09-15

    The Quantum Chemical Topological Force Field (QCTFF) uses the machine learning method kriging to map atomic multipole moments to the coordinates of all atoms in the molecular system. It is important that kriging operates on relevant and realistic training sets of molecular geometries. Therefore, we sampled single amino acid geometries directly from protein crystal structures stored in the Protein Databank (PDB). This sampling enhances the conformational realism (in terms of dihedral angles) of the training geometries. However, these geometries can be fraught with inaccurate bond lengths and valence angles due to artefacts of the refinement process of the X-ray diffraction patterns, combined with experimentally invisible hydrogen atoms. This is why we developed a hybrid PDB/nonstationary normal modes (NM) sampling approach called PDB/NM. This method is superior over standard NM sampling, which captures only geometries optimized from the stationary points of single amino acids in the gas phase. Indeed, PDB/NM combines the sampling of relevant dihedral angles with chemically correct local geometries. Geometries sampled using PDB/NM were used to build kriging models for alanine and lysine, and their prediction accuracy was compared to models built from geometries sampled from three other sampling approaches. Bond length variation, as opposed to variation in dihedral angles, puts pressure on prediction accuracy, potentially lowering it. Hence, the larger coverage of dihedral angles of the PDB/NM method does not deteriorate the predictive accuracy of kriging models, compared to the NM sampling around local energetic minima used so far in the development of QCTFF.

  16. Border Crossing/Entry Data - Border Crossing/Entry Data Time Series tool

    Data.gov (United States)

    Department of Transportation — The dataset is known as “Border Crossing/Entry Data.” The Bureau of Transportation Statistics (BTS) Border Crossing/Entry Data provides summary statistics to the...

  17. Entry Into a Care Trajectory

    Directory of Open Access Journals (Sweden)

    Normand Carpentier

    2013-06-01

    Full Text Available A broad range of services are developing in response to the needs of an aging population. Although most interventions are carried out in the patient’s living environment—at the heart of society—few studies on service utilization refer to social theory. This paper suggests that studies on older people with chronic health conditions would benefit from a stronger theoretical foundation. Drawing on 15 in-depth interviews, it highlights the relevance of individualization processes and the network society, 2 central theoretical concerns in sociology. The research provides a unique perspective on the entry into the care trajectory and expands our comprehension of the emergence of a social organization that can respond to the needs of elderly patients. Data of this nature may be useful in service planning and the development of a care-centered approach.

  18. An investigation of the Lewis acid mediated 1,3-dipolar cycloaddition between N-benzyl-C-(2-pyridyl)nitrone and allylic alcohol. Direct entry to isoxazolidinyl C-nucleosides.

    Science.gov (United States)

    Merino, Pedro; Tejero, Tomas; Laguna, Mariano; Cerrada, Elena; Moreno, Ana; Lopez, Jose A

    2003-07-07

    The cycloaddition reaction of N-benzyl C-(2-pyridyl) nitrone with allylic alcohol has been carried out to obtain the corresponding 2-benzyl-3-(2-pyridyl)-5-hydroxymethylisoxazolidine. The influence of Lewis acids in the reaction has been studied and a complete 3,5-regioselectivity and cis diastereoselectivity was observed when the reaction was carried out with 1.0 equiv of AgOTf, [Ag(OClO3)(PPh2Me)] or Zn(OTf)2. Insight into the mechanism of the reaction has been obtained by isolating and characterizing (X-ray) the intermediate complexes. Also, a model based on both experimental and theoretical results is proposed.

  19. Entry into mitosis without Cdc2 kinase activation.

    Science.gov (United States)

    Gowdy, P M; Anderson, H J; Roberge, M

    1998-11-01

    Mouse FT210 cells at 39 degreesC cannot enter mitosis but arrest in G2 phase, because they lack Cdc2 kinase activity as a result of a temperature-sensitive lesion in the cdc2 gene. Incubation of arrested cells with the protein phosphatase 1 and 2A inhibitor okadaic acid induces morphologically normal chromosome condensation. We now show that okadaic acid also induces two other landmark events of early mitosis, nuclear lamina depolymerization and centrosome separation, in the absence of Cdc2 kinase activity. Okadaic acid-induced entry into mitosis is accompanied by partial activation of Cdc25C and may be prevented by tyrosine phosphatase inhibitors and by the protein kinase inhibitor staurosporine, suggesting that Cdc25C and kinases distinct from Cdc2 are required for these mitotic events. Using in-gel assays, we show that a 45-kDa protein kinase normally activated at mitosis is also activated by okadaic acid independently of Cdc2 kinase. The 45-kDa kinase can utilize GTP, is stimulated by spermine and is inhibited by heparin. These properties are characteristic of the kinase CK2, but immunoprecipitation studies indicate that it is not CK2. The data underline the importance of a tyrosine phosphatase, possibly Cdc25C, and of kinases other than Cdc2 in the structural changes the cell undergoes at mitosis, and indicate that entry into mitosis involves the activation of multiple kinases working in concert with Cdc2 kinase.

  20. Foreign Entry and Heterogeneous Growth of Firms

    DEFF Research Database (Denmark)

    Deng, Paul Duo; Jefferson, Gary H.

    We adopt the framework of Schumpeterian creative destruction formalized by Aghion et al. (2009) to analyze the impact of foreign entry on the productivity growth of domestic firms. In the face of foreign entry, domestic firms exhibit heterogeneous patterns of growth depending on their technological...

  1. Predicting the Diversity of Foreign Entry Modes

    DEFF Research Database (Denmark)

    Hashai, Niron; Geisler Asmussen, Christian; Benito, Gabriel;

    2007-01-01

    diversity across value chain activities and host markets. Analyzing a sample of Israeli based firms we show that larger firms exhibit a higher degree of entry mode diversity both across value chain activities and across host markets. Higher levels of knowledge intensity are also associated with more...... diversity in firms' entry modes across both dimensions....

  2. Foreign Entry and Heterogeneous Growth of Firms

    DEFF Research Database (Denmark)

    Deng, Paul Duo; Jefferson, Gary H.

    We adopt the framework of Schumpeterian creative destruction formalized by Aghion et al. (2009) to analyze the impact of foreign entry on the productivity growth of domestic firms. In the face of foreign entry, domestic firms exhibit heterogeneous patterns of growth depending on their technologic...

  3. Thermal Soak Analysis of Earth Entry Vehicles

    Science.gov (United States)

    Agrawal, Parul; Sepka, Steven A.; Aliaga, Jose F.; Venkatapathy, Ethiraj; Samareh, Jamshid A.

    2012-01-01

    The Multi-Mission Earth Entry Vehicle project is developing an integrated tool called Multi Mission System Analysis for Planetary Entry Descent and Landing that will provide key technology solutions including mass sizing, aerodynamics, aerothermodynamics, and thermal and structural analysis for any given sample return mission. Thermal soak analysis and temperature predictions of various components including the payload container of the entry vehicle are part of the solution that this tool will offer to mission designers. The present paper focuses on the thermal soak analysis of an entry vehicle design based on the Mars Sample Return entry vehicle geometry and discusses a technical approach to develop parametric models for thermal soak analysis that will be integrated into the tool.

  4. 19 CFR 142.3 - Entry documentation required.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Entry documentation required. 142.3 Section 142.3... TREASURY (CONTINUED) ENTRY PROCESS Entry Documentation § 142.3 Entry documentation required. (a) Contents. Except as provided in paragraph (b) of this section, the entry documentation required to secure...

  5. LABORATORY VOICE DATA ENTRY SYSTEM.

    Energy Technology Data Exchange (ETDEWEB)

    PRAISSMAN,J.L.SUTHERLAND,J.C.

    2003-04-01

    We have assembled a system using a personal computer workstation equipped with standard office software, an audio system, speech recognition software and an inexpensive radio-based wireless microphone that permits laboratory workers to enter or modify data while performing other work. Speech recognition permits users to enter data while their hands are holding equipment or they are otherwise unable to operate a keyboard. The wireless microphone allows unencumbered movement around the laboratory without a ''tether'' that might interfere with equipment or experimental procedures. To evaluate the potential of voice data entry in a laboratory environment, we developed a prototype relational database that records the disposal of radionuclides and/or hazardous chemicals Current regulations in our laboratory require that each such item being discarded must be inventoried and documents must be prepared that summarize the contents of each container used for disposal. Using voice commands, the user enters items into the database as each is discarded. Subsequently, the program prepares the required documentation.

  6. Novel Approaches to Inhibit HIV Entry

    Directory of Open Access Journals (Sweden)

    Chukwuka A. Didigu

    2012-02-01

    Full Text Available Human Immunodeficiency Virus (HIV entry into target cells is a multi-step process involving binding of the viral glycoprotein, Env, to its receptor CD4 and a coreceptor—either CCR5 or CXCR4. Understanding the means by which HIV enters cells has led to the identification of genetic polymorphisms, such as the 32 base-pair deletion in the ccr5 gene (ccr5∆32 that confers resistance to infection in homozygous individuals, and has also resulted in the development of entry inhibitors—small molecule antagonists that block infection at the entry step. The recent demonstration of long-term control of HIV infection in a leukemic patient following a hematopoietic stem cell transplant using cells from a ccr5∆32 homozygous donor highlights the important role of the HIV entry in maintaining an established infection and has led to a number of attempts to treat HIV infection by genetically modifying the ccr5 gene. In this review, we describe the HIV entry process and provide an overview of the different classes of approved HIV entry inhibitors while highlighting novel genetic strategies aimed at blocking HIV infection at the level of entry.

  7. Advances in spacecraft atmospheric entry guidance

    Science.gov (United States)

    Benito Manrique, Joel

    In order to advance entry guidance technology two different research areas have been explored with the objective of increasing the reachable landing area and the landing accuracy for future Mars missions. Currently only the northern hemisphere of Mars is available for landing due to its low elevation. Only low elevation landing sites have the necessary atmospheric density to allow landing using current Entry, Descent and Landing (EDL) technology. In order to reach most of the Ancient Highlands, the majority of the southern hemisphere, advanced EDL technology is needed in multiple fields, including entry guidance. The first research area is the definition and applications of reachable and controllable sets for entry. The definition of the reachable and controllable sets provides a framework for the study of the capabilities of an entry vehicle in a given planet. Reachable and controllable sets can be used to comprehensively characterize the envelope of trajectories that a vehicle can fly, the sites it can reach and the entry states that can be accommodated. The sets can also be used for the evaluation of trajectory planning algorithms and to assist in the selection of the entry or landing sites. In essence, the reachable and controllable sets offer a powerful vehicle and trajectory analysis and design framework that allows for better mission design choices. In order to illustrate the use of the sets, they are computed for a representative Mars mission using two different vehicle configurations. The sets characterize the impact of the vehicle configuration on the entry capability. Furthermore, the sets are used to find the best skip-entry trajectory for a return from the Moon mission, highlighting the utility of the sets in atmospheric maneuvers other than entry. The second research area is the development of the components of an entry guidance algorithm that allow high elevation landing and provide as well high landing accuracy. The approach taken follows the

  8. Entry Regulation under Asymmetric Information about Demand

    Directory of Open Access Journals (Sweden)

    Paula Sarmento

    2010-01-01

    Full Text Available We investigate how an incumbent firm can use the regulatory policy about entry and the informational advantage to protect his market position. This question is studied through the construction of a signalling game where we assume that the regulator has less information about demand than the firms. We conclude that there is a pooling equilibrium and partially separating equilibria in which entry is deterred and, if demand is high, there will be insufficient entry. The final effect on welfare depends on the tradeoff between short-run benefits (lower price and long-run losses (weaker competition.

  9. Market entry strategies into the BRIC countries

    DEFF Research Database (Denmark)

    Boyd, Britta; Dyhr Ulrich, Anna Marie

    2014-01-01

    Based on a sample of 177 exporting SMEs, this study investigates what market entry strategy is used by Danish family and non-family businesses. From a resource-based view, three critical internal factors (risk, flexibility and control) affecting the entry mode choice into the BRIC markets...... when entering the BRIC markets. In contrast, family firms choose high commitment entry modes which involve high risk and low flexibility when entering the BRIC markets. Further implications discuss the suitability of export strategies to BRIC markets for managers of Danish family and non-family firms....

  10. Texting while driving: is speech-based text entry less risky than handheld text entry?

    Science.gov (United States)

    He, J; Chaparro, A; Nguyen, B; Burge, R J; Crandall, J; Chaparro, B; Ni, R; Cao, S

    2014-11-01

    Research indicates that using a cell phone to talk or text while maneuvering a vehicle impairs driving performance. However, few published studies directly compare the distracting effects of texting using a hands-free (i.e., speech-based interface) versus handheld cell phone, which is an important issue for legislation, automotive interface design and driving safety training. This study compared the effect of speech-based versus handheld text entries on simulated driving performance by asking participants to perform a car following task while controlling the duration of a secondary text-entry task. Results showed that both speech-based and handheld text entries impaired driving performance relative to the drive-only condition by causing more variation in speed and lane position. Handheld text entry also increased the brake response time and increased variation in headway distance. Text entry using a speech-based cell phone was less detrimental to driving performance than handheld text entry. Nevertheless, the speech-based text entry task still significantly impaired driving compared to the drive-only condition. These results suggest that speech-based text entry disrupts driving, but reduces the level of performance interference compared to text entry with a handheld device. In addition, the difference in the distraction effect caused by speech-based and handheld text entry is not simply due to the difference in task duration.

  11. Integrated Entry Guidance for Reusable Launch Vehicle

    Institute of Scientific and Technical Information of China (English)

    NING Guo-dong; ZHANG Shu-guang; FANG Zhen-ping

    2007-01-01

    A method for the implementation of integrated three-degree-of-freedom constrained entry guidance for reusable launch vehicle is presented. Given any feasible entry conditions, terminal area energy management interface conditions, and the reference trajectory generated onboard then, the method can generate a longitudinal guidance profile rapidly, featuring linear quadratic regular method and a proportional-integral-derivative tracking law with time-varying gains, which satisfies all the entry corridor constraints and meets the requirements with high precision. Afterwards, by utilizing special features of crossrange parameter, establishing bank-reversal corridor,and determining bank-reversals according to dynamically adjusted method, the algorithm enables the lateral entry guidance system to fly a wide range of missions and provides reliable and good performance in the presence of significant aerodynamic modeling uncertainty.Fast trajectory guidance profiles and simulations with a reusable launch vehicle model for various missions and aerodynamic uncertainties are presented to demonstrate the capacity and reliability of this method.

  12. Border Crossing/Entry Data - Boarder Crossing

    Data.gov (United States)

    Department of Transportation — Border Crossing/Entry Data provides summary statistics for incoming crossings at the U.S.-Canadian and the U.S.-Mexican border at the port level. Data are available...

  13. Entry Mode and Performance of Nordic Firms

    DEFF Research Database (Denmark)

    Wulff, Jesper

    2015-01-01

    This study investigates whether the relationship between mode of international market entry and non-location bound international experience is weaker for firms that are large or have a high foreign to total sales ratio, labeled multinational experience. Empirical evidence based on 250 foreign...... market entries made by Norwegian, Danish and Swedish firms suggests that the association between equity mode choice and non-location bound international experience diminishes in the presence of higher levels of multinational experience. Furthermore, firms whose entry mode choice is predicted by the model...... including the proposed moderating effect, on average, yield higher post-entry performance. This study sheds light on inconsistent results found in previous research investigating the impact of international experience and has practical implications for managerial decision-making....

  14. The Effects of Entry in Bilateral Oligopoly

    Directory of Open Access Journals (Sweden)

    Alex Dickson

    2013-06-01

    Full Text Available The purpose of this paper is to study the effects of entry into the market for a single commodity in which both sellers and buyers are permitted to interact strategically. With the inclusion of an additional seller, the market is quasi-competitive: the price falls and volume of trade increases, as expected. However, contrary to the conventional wisdom, existing sellers’ payoffs may increase. The conditions under which entry by new sellers raises the equilibrium payoffs of existing sellers are derived. These depend in an intuitive way on the elasticity of a strategic analog of demand and the market share of existing sellers, and encompass entirely standard economic environments. Similar results are derived relating to the entry of additional buyers and the effects of entry on both sides of the market are investigated.

  15. Entry and exit decisions under uncertainty

    DEFF Research Database (Denmark)

    Kongsted, Hans Christian

    1996-01-01

    This paper establishes the general deterministic limit that corresponds to Dixit's model of entry and exit decisions under uncertainty. The interlinked nature of decisions is shown to be essential also in the deterministic limit. A numerical example illustrates the result......This paper establishes the general deterministic limit that corresponds to Dixit's model of entry and exit decisions under uncertainty. The interlinked nature of decisions is shown to be essential also in the deterministic limit. A numerical example illustrates the result...

  16. Hypersonic and planetary entry flight mechanics

    Science.gov (United States)

    Vinh, N. X.; Busemann, A.; Culp, R. D.

    1980-01-01

    The book treats hypersonic flight trajectories and atmospheric entry flight mechanics in light of their importance for space shuttle entry. Following a review of the structures of planetary atmospheres and aerodynamic forces, equations are derived for flight over a spherical planet, and the performance of long-range hypervelocity vehicles in extra-atmospheric flight is analyzed. Consideration is then given to vehicle trajectories in the powered and atmospheric reentry phases of flight, and several first-order solutions are derived for various planetary entry situations. The second-order theory of Loh for entry trajectories is presented along with the classical theories of Yaroshevskii and Chapman for entry into planetary atmospheres, and the thermal problems encountered in hypersonic flight are analyzed. A unified theory for entry into planetary atmospheres is then introduced which allows the performance of a general type of lifting vehicle to be studied, and applied to the analysis of orbit contraction due to atmospheric drag, flight with lift modulation and lateral maneuvers.

  17. Planetary/DOD entry technology flight experiments. Volume 2: Planetary entry flight experiments

    Science.gov (United States)

    Christensen, H. E.; Krieger, R. J.; Mcneilly, W. R.; Vetter, H. C.

    1976-01-01

    The technical feasibility of launching a high speed, earth entry vehicle from the space shuttle to advance technology for the exploration of the outer planets' atmospheres was established. Disciplines of thermodynamics, orbital mechanics, aerodynamics propulsion, structures, design, electronics and system integration focused on the goal of producing outer planet environments on a probe shaped vehicle during an earth entry. Major aspects of analysis and vehicle design studied include: planetary environments, earth entry environment capability, mission maneuvers, capabilities of shuttle upper stages, a comparison of earth entry planetary environments, experiment design and vehicle design.

  18. 19 CFR 142.44 - Entry number range.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Entry number range. 142.44 Section 142.44 Customs... (CONTINUED) ENTRY PROCESS Line Release § 142.44 Entry number range. After an application for Line Release has received final approval, filers must provide the port director, in writing, with a range of entry...

  19. 77 FR 5681 - Establishment of Global Entry Program

    Science.gov (United States)

    2012-02-06

    ... assist in developing a marketing strategy. The firm has created a new Global Entry logo and tag line... SENTRI II. Analysis of Comments A. Program Performance and Entry Process B. Marketing of Global Entry C.... Marketing of Global Entry Comment: CBP received two comments suggesting that CBP should expand marketing...

  20. Lessons learned from planetary entry probe missions

    Science.gov (United States)

    Niemann, Hasso; Atreya, Sushil K.; Kasprzak, Wayne

    Probing the atmospheres and surfaces of the planets and their moons with fast moving entry probes has been a very useful and essential technique to obtain in situ or quasi in situ scientific data (ground truth) which could not otherwise be obtained from fly by or orbiter only missions and where balloon, aircraft or lander missions are too complex and too costly. Planetary entry probe missions have been conducted successfully on Venus, Mars, Jupiter and Titan after having been first demonstrated in the Earth's atmosphere. Future planetary missions should also include more entry probe missions back to Venus and to the outer planets. The success of and science returns from past missions, the need for more and unique data, and a continuously advancing technology generate confidence that future missions will be even more successful with respect to science return and technical performance. There are, however, unique challenges associated with entry probe missions and with building instruments for an entry probe, as compared to orbiters, landers, or rovers. Conditions during atmospheric entry are extreme. There are operating time constraints due to the usually short duration of the probe descent, and the instruments experience rapid environmental changes in temperature and pressure. In addition, there are resource limitations, i.e. mass, power, size and bandwidth. Because of the protective heat shield and the high acceleration the probe experiences during entry, the ratio of payload to total probe mass is usually much smaller than in other missions. Finally, the demands on the instrument design are determined in large part by conditions (pressure, temperature, composition) unique to the particular body under study, and as a result, there is no one-size-fits-all instrument for an atmospheric probe. Many of these requirements are more easily met by miniaturizing the probe instrumentation and consequently reducing the required size of the probe. Improved heat shield

  1. 76 FR 82315 - Agency Information Collection Activities: Entry/Immediate Delivery Application and Simplified Entry

    Science.gov (United States)

    2011-12-30

    ... SECURITY U.S. Customs and Border Protection Agency Information Collection Activities: Entry/Immediate... Budget (OMB) for review and approval in accordance with the Paperwork Reduction Act: Entry/Immediate... process is conducted in accordance with 5 CFR 1320.10. DATES: Written comments should be received on or...

  2. Autonomous gliding entry guidance with geographic constraints

    Institute of Scientific and Technical Information of China (English)

    Guo Jie; Wu Xuzhong; Tang Shengjing

    2015-01-01

    This paper presents a novel three-dimensional autonomous entry guidance for relatively high lift-to-drag ratio vehicles satisfying geographic constraints and other path constraints. The guidance is composed of onboard trajectory planning and robust trajectory tracking. For trajectory planning, a longitudinal sub-planner is introduced to generate a feasible drag-versus-energy profile by using the interpolation between upper boundary and lower boundary of entry corridor to get the desired trajectory length. The associated magnitude of the bank angle can be specified by drag profile, while the sign of bank angle is determined by lateral sub-planner. Two-reverse mode is utilized to satisfy waypoint constraints and dynamic heading error corridor is utilized to satisfy no-fly zone constraints. The longitudinal and lateral sub-planners are iteratively employed until all of the path constraints are satisfied. For trajectory tracking, a novel tracking law based on the active disturbance rejection control is introduced. Finally, adaptability tests and Monte Carlo simulations of the entry guidance approach are performed. Results show that the proposed entry guidance approach can adapt to different entry missions and is able to make the vehicle reach the prescribed target point precisely in spite of geographic constraints.

  3. Financial Performance of Entry Mode Decisions

    DEFF Research Database (Denmark)

    Boyd, Britta; Dyhr Ulrich, Anna Marie; Hollensen, Svend

    2012-01-01

    Based on a survey of 170 Danish SMEs the paper examines influences on entry mode choices and the financial outcome of these decisions. The main research objectives are divided into two steps: Step 1: To determine the factors influencing the choice of foreign entry modes by Danish companies. Step ...... and implications are provided for companies willing to invest more into foreign markets in order to achieve a higher degree of control and better financial results.......Based on a survey of 170 Danish SMEs the paper examines influences on entry mode choices and the financial outcome of these decisions. The main research objectives are divided into two steps: Step 1: To determine the factors influencing the choice of foreign entry modes by Danish companies. Step 2......: To determine the relationship between the choice of entry mode and export performance, measured in terms of financial outcome. Drawing from transaction cost theory the authors develop and test a model where different factors affect the level of control chosen by the parent company. This study contributes...

  4. Shuttle program. MCC Level C formulation requirements: Entry guidance and entry autopilot

    Science.gov (United States)

    Harpold, J. C.; Hill, O.

    1980-01-01

    A set of preliminary entry guidance and autopilot software formulations is presented for use in the Mission Control Center (MCC) entry processor. These software formulations meet all level B requirements. Revision 2 incorporates the modifications required to functionally simulate optimal TAEM targeting capability (OTT). Implementation of this logic in the MCC must be coordinated with flight software OTT implementation and MCC TAEM guidance OTT. The entry guidance logic is based on the Orbiter avionics entry guidance software. This MCC requirements document contains a definition of coordinate systems, a list of parameter definitions for the software formulations, a description of the entry guidance detailed formulation requirements, a description of the detailed autopilot formulation requirements, a description of the targeting routine, and a set of formulation flow charts.

  5. Mechanism of store-operated calcium entry

    Indian Academy of Sciences (India)

    Devkanya Dutta

    2000-12-01

    Activation of receptors coupled to the phospholipase C/IP3 signalling pathway results in a rapid release of calcium from its intracellular stores, eventually leading to depletion of these stores. Calcium store depletion triggers an influx of extracellular calcium across the plasma membrane, a mechanism known as the store-operated calcium entry or capacitative calcium entry. Capacitative calcium current plays a key role in replenishing calcium stores and activating various physiological processes. Despite considerable efforts, very little is known about the molecular nature of the capacitative channel and the signalling pathway that activates it. This review summarizes our current knowledge about store operated calcium entry and suggests possible hypotheses for its mode of activation.

  6. Modes and orders of market entry

    DEFF Research Database (Denmark)

    Ulhøi, John Parm

    2012-01-01

    This paper focuses on the initial questions of how and when to enter a market from the perspective of a firm. By entry mode is meant a firm’s strategy (innovation or imitation) for entering the market in response to environmental changes. Entry order refers to the related issue of market timing...... strategies are more ambiguous. Based on a corporate technology and innovation strategy perspective, the paper reconceptualises and extends existing modes and orders of market entry, and in particular clarifies the ambiguity associated with imitative strategies. Four distinct imitator strategies...... are identified. The paper closes with a brief discussion of limitations, avenues for future research, and implications for managers and affected policymakers....

  7. Automated Re-Entry System using FNPEG

    Science.gov (United States)

    Johnson, Wyatt R.; Lu, Ping; Stachowiak, Susan J.

    2017-01-01

    This paper discusses the implementation and simulated performance of the FNPEG (Fully Numerical Predictor-corrector Entry Guidance) algorithm into GNC FSW (Guidance, Navigation, and Control Flight Software) for use in an autonomous re-entry vehicle. A few modifications to FNPEG are discussed that result in computational savings -- a change to the state propagator, and a modification to cross-range lateral logic. Finally, some Monte Carlo results are presented using a representative vehicle in both a high-fidelity 6-DOF (degree-of-freedom) sim as well as in a 3-DOF sim for independent validation.

  8. Form, its meaning, and dictionary entries

    Directory of Open Access Journals (Sweden)

    Violetta Koseska-Toszewa

    2015-11-01

    It is worth stressing that distinguishing between the form and its meaning in comparing the material 6 languages belonging to three different groups of Slavic languages (as is the case in the MONDILEX Project will allow us to avoid numeorus substantiva mistakes and erroneous conclusions. Hence dictionary entries should be verified and made uniform in that respect before they are “digitalized”... Distinction between the form and its meaning in a dictionary entry is fully possible, as shown by works of Z. Saloni (2002 and A.Przepiórkowski (2008.

  9. Project Prometheus and Future Entry Probe Missions

    Science.gov (United States)

    Spilker, Thomas R.

    2005-01-01

    A viewgraph presentation on project Prometheus and future entry probe missions is shown. The topics include: 1) What Is Project Prometheus?; 2) What Capabilities Can Project Prometheus Offer? What Mission Types Are Being Considered?; 3) Jupiter Icy Moons Orbiter (JIMO); 4) How Are Mission Opportunities Changing?; 5) Missions Of Interest a Year Ago; 6) Missions Now Being Considered For Further Study; 7) Galileo-Style (Conventional) Probe Delivery; 8) Galileo-Style Probe Support; 9) Conventional Delivery and Support of Multiple Probes; 10) How Entry Probe Delivery From an NEP Vehicle Is Different; and 11) Concluding Remarks.

  10. "Generic Entry and the Pricing of Pharmaceuticals"

    OpenAIRE

    Frank, Richard G.; David S. Salkever

    1995-01-01

    During the 1980s the share of prescriptions sold by retail pharmacies that was accounted for by generic products roughly doubled. The price response to generic entry of brand-name products has been a source of controversy. In this paper we estimate models of price responses to generic entry in the market for brand-name and generic drugs. We study a sample of 32 drugs that lost patent protection during the early to mid-1980s. Our results provide strong evidence that brand-name prices increase ...

  11. Position-optimization on retained entry and backfilling wall in gob-side entry retaining techniques

    Institute of Scientific and Technical Information of China (English)

    Xiaowei Feng; Nong Zhang

    2015-01-01

    This study investigates the stability problem of gob-side entry retaining (GER) and backfilling wall which located under the key block B. Based on the combined research of elastic–plastic mechanics, structure mechanics and modern theory of mining-induced pressure, the caving characteristic and roof structure over the GER were analyzed, and the vertical force and the torque on retained entry roof were also derived as the position for the retained entry varies. On the basis of the specific geology in Huainan mining area, the results indicate that a relatively more stable position for retained entry neighbors the hinge point of block A and B, and it also located at a scope ranging from this point to the one-third length of block B in horizontal direction. As to appropriate position for backfilling wall, this study recommends partial-road-in backfilling method for GER. Field trial conducted at panel face 12418 of Xieqiao Mine demonstrates that the recommended width for original entry is 3.6 m and the preferred width proportion between original retained entry and original entry is 75%or so whereas the avoidable one is 88%or so. These findings provide qualitative references to the mines which share similar geology as what Huainan mining area characterized.

  12. Mechanisms of outer membrane vesicle entry into host cells.

    Science.gov (United States)

    O'Donoghue, Eloise J; Krachler, Anne Marie

    2016-11-01

    Bacterial outer membrane vesicles (OMVs) are nano-sized compartments consisting of a lipid bilayer that encapsulates periplasm-derived, luminal content. OMVs, which pinch off of Gram-negative bacteria, are now recognized as a generalized secretion pathway which provides a means to transfer cargo to other bacterial cells as well as eukaryotic cells. Compared with other secretion systems, OMVs can transfer a chemically extremely diverse range of cargo, including small molecules, nucleic acids, proteins, and lipids to proximal cells. Although it is well recognized that OMVs can enter and release cargo inside host cells during infection, the mechanisms of host association and uptake are not well understood. This review highlights existing studies focusing on OMV-host cell interactions and entry mechanisms, and how these entry routes affect cargo processing within the host. It further compares the wide range of methods currently used to dissect uptake mechanisms, and discusses potential sources of discrepancy regarding the mechanism of OMV uptake across different studies. © 2016 The Authors Cellular Microbiology Published by John Wiley & Sons Ltd.

  13. 19 CFR 4.8 - Preliminary entry.

    Science.gov (United States)

    2010-04-01

    ... electronic equivalent of a complete Customs Form 1302 (Cargo Declaration), in the manner provided in § 4.7(b... 19 Customs Duties 1 2010-04-01 2010-04-01 false Preliminary entry. 4.8 Section 4.8 Customs Duties U.S. CUSTOMS AND BORDER PROTECTION, DEPARTMENT OF HOMELAND SECURITY; DEPARTMENT OF THE...

  14. 19 CFR 145.25 - Entry correct.

    Science.gov (United States)

    2010-04-01

    ... director believes the duty originally assessed was correct, he shall send the addressee a notice in writing... 19 Customs Duties 2 2010-04-01 2010-04-01 false Entry correct. 145.25 Section 145.25 Customs Duties U.S. CUSTOMS AND BORDER PROTECTION, DEPARTMENT OF HOMELAND SECURITY; DEPARTMENT OF THE...

  15. Continuous Aerodynamic Modelling of Entry Shapes

    NARCIS (Netherlands)

    Dirkx, D.; Mooij, E.

    2011-01-01

    During the conceptual design phase of a re-entry vehicle, the vehicle shape can be varied and its impact on performance evaluated. To this end, the continuous modeling of the aerodynamic characteristics as a function of the shape is useful in exploring the full design space. Local inclination method

  16. Radon entry into a simple test structure

    DEFF Research Database (Denmark)

    Andersen, C.E.; Søgaard-Hansen, J.; Majborn, B.

    1992-01-01

    A simple test structure for studies of radon entry into houses has been constructed at a field site at Riso National Laboratory. It consists of a 40 1, stainless-steel cylinder placed in a 0.52 m deep quadratic excavation with a side length of 2.4 m. The excavation is lined with an airtight...

  17. Processes with multiple entries and exits

    NARCIS (Netherlands)

    Bergstra, J.A.; Stefanescu, G.

    1995-01-01

    This paper is an attempt to integrate the algebra of communicating processes (ACP) and the algebra of flownomials (AF). Basically, this means to combine axiomatized parallel and looping operators. To this end we introduce a model of process graphs with multiple entries and exits. In this model the u

  18. HIV-1 Entry Inhbitors: An Overview

    Science.gov (United States)

    Kuritzkes, Daniel R.

    2009-01-01

    Purpose of review This review provides an overview of HIV-1 entry inhibitors, with a focus on chemokine receptor antagonists. Recent findings Entry of HIV-1 into target cells is an ordered multi-step process involving attachment, co-receptor binding and fusion. Inhibitors of each step have been identified and shown to have antiviral activity in clinical trials. Phase 1-2 trials of monoclonal antibodies and small-molecule attachment inhibitors have demonstrated activity in HIV-1-infected subjects, but none has progressed to later phase clinical trials. The post-attachment inhibitor ibalizumab has shown activity in phase 1 and 2 trials; further studies are anticipated. The CCR5 antagonists maraviroc (now been approved for clinical use) and vicriviroc (in phase 3 trials) have shown significant benefit in controlled trials in treatment-experienced subjects; additional CCR5 antagonists are in various stages of clinical development. Targeting CXCR4 has proven to be more challenging. Although proof of concept has been demonstrated in phase 1-2 trials of two compounds, neither proved suitable for chronic administration. Little progress has been reported in developing longer acting or orally bioavailable fusion inhibitors. Summary ACCR5 antagonist and a fusion inhibitor are approved for use as HIV-1 entry inhibitors. Development of drugs targeting other steps in HIV-1 entry is ongoing. PMID:19339945

  19. Duopoly Dynamics with a Barrier to Entry

    NARCIS (Netherlands)

    Abbring, J.H.; Campbell, Jeffrey R.

    2007-01-01

    This paper considers the effects of raising the cost of entry for a potential competitor on infinite-horizon Markov-perfect duopoly dynamics with ongoing demand uncertainty. All entrants serving the model industry incur sunk costs, and exit avoids future fixed costs. We focus on the unique equilibri

  20. Entry modes of European firms in Vietnam

    Directory of Open Access Journals (Sweden)

    Daniel Simonet

    2012-09-01

    Full Text Available Purpose: The purpose of the paper is to explore the entry modes of EU firms setting up operations in Vietnam. Design/methodology/approach: we use a case study approach on Haymarket, Cadbury, Creative Education, Fairchild, Aventis and Artemisinin and Farming International using interviews from managerial professionals in Vietnam. Findings: Despite the fact that Vietnam has been opening up for more than 20 years, licensing is the preferred entry mode because of the risks involved in venturing with local firms; that preference signals a low level commitment and a high perception of risk and state interference. In line with Vietnam transition to state - rather than private market - capitalism, a foreign company opting for a joint-venture will do so with a state-owned rather than privately-owned company. The choice of a subsidiary can be explained by the lack of trust in partners and institutions, not by improvement in the socio-political environment. Limitations: In determining the entry mode strategy, the paper focuses on the Uppsala school’s “psychic distance” (e.g. cultural distance, lack of trust rather than on firm-specific advantages (Rugman, 1980; 2006. Key-words: international entry mode; emerging markets; subsidiary; joint-venture; India; Vietnam

  1. Internet portals as portfolios of entry options

    NARCIS (Netherlands)

    Perotti, E.C.; Rossetto, S.

    2000-01-01

    We investigate the valuation of platform investment, such as a software operating system or an Internet portal WebPage. Platform investment is the creation of an innovative distribution and production infrastructure, which increases access to customers; as a result it reduces entry costs in related

  2. Internet portals as portfolios of entry options

    NARCIS (Netherlands)

    Perotti, E.C.; Rossetto, S.

    2000-01-01

    We investigate the valuation of platform investment, such as a software operating system or an Internet portal WebPage. Platform investment is the creation of an innovative distribution and production infrastructure, which increases access to customers; as a result it reduces entry costs in related

  3. Foreign Entry and Heterogeneous Growth of Firms

    DEFF Research Database (Denmark)

    Deng, Paul Duo; Jefferson, Gary H.

    distance from foreign firms. Domestic firms with smaller technological distance from their foreign counterparts tend to experience faster productivity growth, while firms with larger technological distance tend to lag further behind. We test this hypothesis using a unique firm-level data of Chinese...... manufacturing. Our empirical results confirm that foreign entry indeed generates strong heterogeneous growth patterns among domestic firms....

  4. Analytic Guidance for the First Entry in a Skip Atmospheric Entry

    Science.gov (United States)

    Garcia-Llama, Eduardo

    2007-01-01

    This paper presents an analytic method to generate a reference drag trajectory for the first entry portion of a skip atmospheric entry. The drag reference, expressed as a polynomial function of the velocity, will meet the conditions necessary to fit the requirements of the complete entry phase. The generic method proposed to generate the drag reference profile is further simplified by thinking of the drag and the velocity as density and cumulative distribution functions respectively. With this notion it will be shown that the reference drag profile can be obtained by solving a linear algebraic system of equations. The resulting drag profile is flown using the feedback linearization method of differential geometric control as guidance law with the error dynamics of a second order homogeneous equation in the form of a damped oscillator. This approach was first proposed as a revisited version of the Space Shuttle Orbiter entry guidance. However, this paper will show that it can be used to fly the first entry in a skip entry trajectory. In doing so, the gains in the error dynamics will be changed at a certain point along the trajectory to improve the tracking performance.

  5. Entry Location and Entry Timing (ELET Decision Model for International Construction Firms

    Directory of Open Access Journals (Sweden)

    Che Maznah Mat Isa

    2014-09-01

    Full Text Available This paper proposes a model for entry location (EL and entry timing (ET decisions to guide construction firms in accessing targeted international markets.  Neglecting to properly choose the right combination of the entry location and entry timing (ELET decisions can lead to poor performance of the firms’ international ventures.  The sampling frame was from the Malaysian construction firms that have undertaken and completed projects abroad.  Survey questionnaires sent to 115 firms registered with Construction Industry Development Board (CIDB Malaysia, operating in more than 50 countries, achieved a 39.1 per cent response rate. Based on a comprehensive statistical analysis of survey data it was found that the mutually inclusive significant factors that influenced the firms’ ELET decisions were: the firm’s ability to assess market signals and opportunities, international experience, financial capacity, competencies and capabilities (project management, specialist expertise and technology, resources (level of knowledge based on research and development, experience in similar works, financial support from the home country banks, technical complexities of projects and availability of funds for projects.  Hence, the present research builds on and extends the literature on the ELET decisions in a more integrated way. Keywords: Entry location, entry timing, resource-based view, international markets, Malaysian construction firms.

  6. Adaptive Deployable Entry and Placement Technology (ADEPT) Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The ADEPT Project is developing a mechanically deployable low-ballistic coefficient aeroshell entry system to perform entry descent landing (EDL) functions for...

  7. Design and Simulation Tools for Planetary Atmospheric Entry Vehicles Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Atmospheric entry is one of the most critical phases of flight during planetary exploration missions. During the design of an entry vehicle, experimental and...

  8. The SR-BI partner PDZK1 facilitates hepatitis C virus entry.

    Directory of Open Access Journals (Sweden)

    Nicholas S Eyre

    Full Text Available Entry of hepatitis C virus (HCV into hepatocytes is a multi-step process that involves a number of different host cell factors. Following initial engagement with glycosaminoglycans and the low-density lipoprotein receptor, it is thought that HCV entry proceeds via interactions with the tetraspanin CD81, scavenger receptor class B type I (SR-BI, and the tight-junction proteins claudin-1 (CLDN1 and occludin (OCLN, culminating in clathrin-dependent endocytosis of HCV particles and their pH-dependent fusion with endosomal membranes. Physiologically, SR-BI is the major receptor for high-density lipoproteins (HDL in the liver, where its expression is primarily controlled at the post-transcriptional level by its interaction with the scaffold protein PDZK1. However, the importance of interaction with PDZK1 to the involvement of SR-BI in HCV entry is unclear. Here we demonstrate that stable shRNA-knockdown of PDZK1 expression in human hepatoma cells significantly reduces their susceptibility to HCV infection, and that this effect can be reversed by overexpression of full length PDZK1 but not the first PDZ domain of PDZK1 alone. Furthermore, we found that overexpression of a green fluorescent protein chimera of the cytoplasmic carboxy-terminus of SR-BI (amino acids 479-509 in Huh-7 cells resulted in its interaction with PDZK1 and a reduced susceptibility to HCV infection. In contrast a similar chimera lacking the final amino acid of SR-BI (amino acids 479-508 failed to interact with PDZK1 and did not inhibit HCV infection. Taken together these results indicate an indirect involvement of PDZK1 in HCV entry via its ability to interact with SR-BI and enhance its activity as an HCV entry factor.

  9. Dependency of radon entry on pressure difference

    Science.gov (United States)

    Kokotti, H.; Kalliokoski, P.; Jantunen, M.

    Radon levels, ventilation rate and pressure differences were monitored continuously in four apartment houses with different ventilation systems. Two of them were ventilated by mechanical exhaust, one by mechanical supply and exhaust, and one by natural ventilation. The two-storey houses were constructed from concrete elements on a slab and located on a gravel esker. It was surprising to find that increasing the ventilation rate increased levels of radon in the apartments. Increased ventilation caused increased outdoor-indoor pressure difference, which in turn increased the entry rate of radon and counteracted the diluting effect of ventilation. The increase was significant when the outdoor-indoor pressure difference exceeded 5 Pa. Especially in the houses with mechanical exhaust ventilation the pressure difference was the most important factor of radon entry rate, and contributed up to several hundred Bq m -3 h -1.

  10. Prototipicality in entries of school dictionaries

    Directory of Open Access Journals (Sweden)

    Everton Castro de Almeida

    2015-01-01

    Full Text Available Theoretical Lexicography is the discipline which, in a general way, studies and criticizes the dictionaries. It is open to the theoretical contribution from other fields of research, such as Text Linguistics, Pragmatics, and Multimodality, once they may show another lexical dimension. Thus, we base our analysis on the theoretical support from Prototypes Theory, from cognitive sciences. In that sense, this paper aims to identify and describe the prototypicality in entries from the five type 3 dictionaries from the PNLD 2012 (National Plan for the Didactic Books. In order to do so, we use theories from Pontes (2008; 2009 and Geeraerts (2007. We analyze five entries, one from each dictionary type 3.

  11. Targeting of cytosolic phospholipase A2α impedes cell cycle re-entry of quiescent prostate cancer cells.

    Science.gov (United States)

    Yao, Mu; Xie, Chanlu; Kiang, Mei-Yee; Teng, Ying; Harman, David; Tiffen, Jessamy; Wang, Qian; Sved, Paul; Bao, Shisan; Witting, Paul; Holst, Jeff; Dong, Qihan

    2015-10-27

    Cell cycle re-entry of quiescent cancer cells has been proposed to be involved in cancer progression and recurrence. Cytosolic phospholipase A2α (cPLA2α) is an enzyme that hydrolyzes membrane glycerophospholipids to release arachidonic acid and lysophospholipids that are implicated in cancer cell proliferation. The aim of this study was to determine the role of cPLA2α in cell cycle re-entry of quiescent prostate cancer cells. When PC-3 and LNCaP cells were rendered to a quiescent state, the active form of cPLA2α with a phosphorylation at Ser505 was lower compared to their proliferating state. Conversely, the phospho-cPLA2α levels were resurgent during the induction of cell cycle re-entry. Pharmacological inhibition of cPLA2α with Efipladib upon induction of cell cycle re-entry inhibited the re-entry process, as manifested by refrained DNA synthesis, persistent high proportion of cells in G0/G1 and low percentage of cells in S and G2/M phases, together with a stagnant recovery of Ki-67 expression. Simultaneously, Efipladib prohibited the emergence of Skp2 while maintained p27 at a high level in the nuclear compartment during cell cycle re-entry. Inhibition of cPLA2α also prevented an accumulation of cyclin D1/CDK4, cyclin E/CDK2, phospho-pRb, pre-replicative complex proteins CDC6, MCM7, ORC6 and DNA synthesis-related protein PCNA during induction of cell cycle re-entry. Moreover, a pre-treatment of the prostate cancer cells with Efipladib during induction of cell cycle re-entry subsequently compromised their tumorigenic capacity in vivo. Hence, cPLA2α plays an important role in cell cycle re-entry by quiescent prostate cancer cells.

  12. 14 CFR 375.24 - Entry and clearance.

    Science.gov (United States)

    2010-01-01

    ... 14 Aeronautics and Space 4 2010-01-01 2010-01-01 false Entry and clearance. 375.24 Section 375.24 Aeronautics and Space OFFICE OF THE SECRETARY, DEPARTMENT OF TRANSPORTATION (AVIATION PROCEEDINGS) SPECIAL... Entry and clearance. All U.S. entry and clearance requirements for aircraft, passengers, crews,...

  13. 19 CFR 143.35 - Procedure for electronic entry summary.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Procedure for electronic entry summary. 143.35 Section 143.35 Customs Duties U.S. CUSTOMS AND BORDER PROTECTION, DEPARTMENT OF HOMELAND SECURITY; DEPARTMENT OF THE TREASURY (CONTINUED) SPECIAL ENTRY PROCEDURES Electronic Entry Filing § 143.35...

  14. 77 FR 17492 - Expansion of Global Entry to Additional Airports

    Science.gov (United States)

    2012-03-26

    ... selection process, and the initial airport locations. See 77 FR 5681 and 8 CFR 235.12. Travelers who wish to... SECURITY U.S. Customs and Border Protection Expansion of Global Entry to Additional Airports AGENCY: U.S... as Global Entry, at twenty major U.S. airports. Global Entry allows pre-approved,...

  15. 40 CFR 90.1207 - Entry and access.

    Science.gov (United States)

    2010-07-01

    ... 40 Protection of Environment 20 2010-07-01 2010-07-01 false Entry and access. 90.1207 Section 90... § 90.1207 Entry and access. (a) To allow the Administrator to determine whether a manufacturer is... maintenance. (c) The provisions of § 90.705(c), (d), (e), (f) and (g) also apply to entry and access...

  16. Maximum Atmospheric Entry Angle for Specified Retrofire Impulse

    Directory of Open Access Journals (Sweden)

    T. N. Srivastava

    1969-07-01

    Full Text Available Maximum atmospheric entry angles for vehicles initially moving in elliptic orbits are investigated and it is shown that tangential retrofire impulse at the apogee results in the maximum entry angle. Equivalence of maximizing the entry angle and minimizing the retrofire impulse is also established.

  17. 19 CFR 143.16 - Substitution of warehouse entry.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Substitution of warehouse entry. 143.16 Section 143.16 Customs Duties U.S. CUSTOMS AND BORDER PROTECTION, DEPARTMENT OF HOMELAND SECURITY; DEPARTMENT... warehouse entry. The importer may substitute an entry for warehouse at any time within 1 year from the...

  18. 50 CFR 91.16 - Submission procedures for entry.

    Science.gov (United States)

    2010-10-01

    ... (CONTINUED) MISCELLANEOUS PROVISIONS MIGRATORY BIRD HUNTING AND CONSERVATION STAMP CONTEST Procedures for.... Each entry must be accompanied by a non-refundable entrance fee and a completed and signed Reproduction... the Reproduction Rights Agreement must be attached to the back of the entry. (b) Each entry should...

  19. 31 CFR 337.6 - Conversions to book-entry.

    Science.gov (United States)

    2010-07-01

    ... 31 Money and Finance: Treasury 2 2010-07-01 2010-07-01 false Conversions to book-entry. 337.6... HOUSING ADMINISTRATION DEBENTURES Certificated Debentures § 337.6 Conversions to book-entry. Upon implementation of the book-entry debenture system, to be announced in advance by separate public notice, all...

  20. Sport entries & qualification manual: Innsbruck 2012 Youth Olympic Games

    OpenAIRE

    2015-01-01

    Sport entries constitute an important part of the delegation registration process of the Innsbruck 2012 Winter Youth Olympic Games. This manual aims to introduce to NOCs the process, relevant policies and requirements regarding sport entries so as to ensure that NOCs can successfully complete the entries for their athletes to the Innsbruck 2012 Winter Youth Olympic Games.

  1. Hypersonic Flight Mechanics. [for atmospheric entry trajectories

    Science.gov (United States)

    Busemann, A.; Vinh, N. X.; Culp, R. D.

    1976-01-01

    The effects of aerodynamic forces on trajectories at orbital speeds are discussed in terms of atmospheric models. The assumptions for the model are spherical symmetry, nonrotating, and an exponential atmosphere. The equations of flight, and the performance in extra-atmospheric flight are discussed along with the return to the atmosphere, and the entry. Solutions of the exact equations using directly matched asymptotic expansions are presented.

  2. Unified treatment of lifting atmospheric entry

    Science.gov (United States)

    Nachtsheim, P. R.; Lehman, L. L.

    1980-01-01

    This paper presents a unified treatment of the effect of lift on peak acceleration during atmospheric entry. Earlier studies were restricted to different regimes because of approximations invoked to solve the same transcendental equation. This paper shows the connection between the earlier studies by employing a general expression for the peak acceleration and obtains solutions to the transcendental equation without invoking the earlier approximations. Results are presented and compared with earlier studies where appropriate.

  3. Nuclear Chk1 prevents premature mitotic entry.

    Science.gov (United States)

    Matsuyama, Makoto; Goto, Hidemasa; Kasahara, Kousuke; Kawakami, Yoshitaka; Nakanishi, Makoto; Kiyono, Tohru; Goshima, Naoki; Inagaki, Masaki

    2011-07-01

    Chk1 inhibits the premature activation of the cyclin-B1-Cdk1. However, it remains controversial whether Chk1 inhibits Cdk1 in the centrosome or in the nucleus before the G2-M transition. In this study, we examined the specificity of the mouse monoclonal anti-Chk1 antibody DCS-310, with which the centrosome was stained. Conditional Chk1 knockout in mouse embryonic fibroblasts reduced nuclear but not centrosomal staining with DCS-310. In Chk1(+/myc) human colon adenocarcinoma (DLD-1) cells, Chk1 was detected in the nucleus but not in the centrosome using an anti-Myc antibody. Through the combination of protein array and RNAi technologies, we identified Ccdc-151 as a protein that crossreacted with DCS-310 on the centrosome. Mitotic entry was delayed by expression of the Chk1 mutant that localized in the nucleus, although forced immobilization of Chk1 to the centrosome had little impact on the timing of mitotic entry. These results suggest that nuclear but not centrosomal Chk1 contributes to correct timing of mitotic entry.

  4. Cell entry by human pathogenic arenaviruses.

    Science.gov (United States)

    Rojek, Jillian M; Kunz, Stefan

    2008-04-01

    The arenaviruses Lassa virus (LASV) in Africa and Machupo (MACV), Guanarito (GTOV) and Junin viruses (JUNV) in South America cause severe haemorrhagic fevers in humans with fatality rates of 15-35%. The present review focuses on the first steps of infection with human pathogenic arenaviruses, the interaction with their cellular receptor molecules and subsequent entry into the host cell. While similarities exist in genomic organization, structure and clinical disease caused by pathogenic Old World and New World arenaviruses these pathogens use different primary receptors. The Old World arenaviruses employ alpha-dystroglycan, a cellular receptor for proteins of the extracellular matrix, and the human pathogenic New World arenaviruses use the cellular cargo receptor transferrin receptor 1. While the New World arenavirus JUNV enters cells via clathrin-dependent endocytosis, evidence occurred for clathrin-independent entry of the prototypic Old World arenavirus lymphocytic choriomeningitis virus. Upon internalization, arenaviruses are delivered to the endosome, where pH-dependent membrane fusion is mediated by the envelope glycoprotein (GP). While arenavirus GPs share characteristics with class I fusion GPs of other enveloped viruses, unusual mechanistic features of GP-mediated membrane fusion have recently been discovered for arenaviruses with important implications for viral entry.

  5. Kinetics of virus entry by endocytosis

    Science.gov (United States)

    Zhdanov, Vladimir P.

    2015-04-01

    Entry of virions into the host cells is either endocytotic or fusogenic. In both cases, it occurs via reversible formation of numerous relatively weak bonds resulting in wrapping of a virion by the host membrane with subsequent membrane rupture or scission. The corresponding kinetic models are customarily focused on the formation of bonds and do not pay attention to the energetics of the whole process, which is crucially dependent, especially in the case of endocytosis, on deformation of actin filaments forming the cytoskeleton of the host cell. The kinetic model of endocytosis, proposed by the author, takes this factor into account and shows that the whole process can be divided into a rapid initial transient stage and a long steady-state stage. The entry occurs during the latter stage and can be described as a first-order reaction. Depending on the details of the dependence of the grand canonical potential on the number of bonds, the entry can be limited either by the interplay of bond formation and membrane rupture (or scission) or by reaching a maximum of this potential.

  6. Filovirus tropism: Cellular molecules for viral entry

    Directory of Open Access Journals (Sweden)

    Ayato eTakada

    2012-02-01

    Full Text Available In human and nonhuman primates, filoviruses (Ebola and Marburg viruses cause severe hemorrhagic fever.Recently, other animals such as pigs and some species of fruit bats have also been shown to be susceptible to these viruses. While having a preference for some cell types such as hepatocytes, endothelial cells, dendritic cells, monocytes, and macrophages, filoviruses are known to be pantropic in infection of primates. The envelope glycoprotein (GP is responsible for both receptor binding and fusion of the virus envelope with the host cell membrane. It has been demonstrated that filovirus GP interacts with multiple molecules for entry into host cells, whereas none of the cellular molecules so far identified as a receptor/coreceptor fully explains filovirus tissue tropism and host range. Available data suggest that the mucin-like region (MLR on GP plays an important role in attachment to the preferred target cells, whose infection is likely involved in filovirus pathogenesis, whereas the MLR is not essential for the fundamental function of the GP in viral entry into cells in vitro. Further studies elucidating the mechanisms of cellular entry of filoviruses may shed light on the development of strategies for prophylaxis and treatment of Ebola and Marburg hemorrhagic fevers.

  7. Studying Pellet Formation of a Filamentous Fungus Rhizopus oryzae to Enhance Organic Acid Production

    Science.gov (United States)

    Liao, Wei; Liu, Yan; Chen, Shulin

    Using pelletized fungal biomass can effectively improve the fermentation performance for most of fugal strains. This article studied the effects of inoculum and medium compositions such as potato dextrose broth (PDB) as carbon source, soybean peptone, calcium carbonate, and metal ions on pellet formation of Rhizopus oryzae. It has been found that metal ions had significantly negative effects on pellet formation whereas soybean peptone had positive effects. In addition PDB and calcium carbonate were beneficial to R. oryzae for growing small smooth pellets during the culture. The study also demonstrated that an inoculum size of less than 1.5×109 spores/L had no significant influence on pellet formation. Thus, a new approach to form pellets has been developed using only PDB, soybean peptone, and calcium carbonate. Meanwhile, palletized fungal fermentation significantly enhanced organic acid production. Lactic acid concentration reached 65.0 g/L in 30 h using pelletized R. oryzae NRRL 395, and fumeric acid concentration reached 31.0 g/L in 96 h using pelletized R. oryzae ATCC 20344.

  8. 19 CFR 149.6 - Entry and entry summary documentation and Importer Security Filing submitted via a single...

    Science.gov (United States)

    2010-04-01

    ... Security Filing submitted via a single electronic transmission. 149.6 Section 149.6 Customs Duties U.S... submitted via a single electronic transmission. If the Importer Security Filing is filed pursuant to § 149.2 of this part via the same electronic transmission as entry or entry/entry summary...

  9. Entry and Exit Dynamics of Nascent Business Owners

    DEFF Research Database (Denmark)

    Rocha, Vera; Carneiro, Anabela; Varum, Celeste

    2015-01-01

    in the labor market and entry modes shape the post-entry dynamics of nascent business owners. By differentiating between different entry and exit routes, this paper provides new evidence on different human capital patterns among nascent business owners and on key determinants of entrepreneurial survival. Our...... results suggest that different exit modes can be predicted by business owners’ entry route. Furthermore, different exit modes exhibit different duration dependence patterns according to the entry mode. Additionally, the paper shows that businesses started after a displacement episode are not necessarily...

  10. Exporting Complex Digital Products: Motives and Entry Modes

    DEFF Research Database (Denmark)

    Rask, Morten

    2005-01-01

    for digital product providers. However, other types of entry modes like what we call direct digital export with F2F-sales, direct digital export with F2F-support, and virtual sales subsidiary are entry modes that respond to a higher degree of pre- and postsales complexity.......When the product is digital, it will most often be distributed directly to the customer through the Internet, and therefore, the entry modes, considered in this paper, are different flavors of the entry mode called direct export: virtual export channel is generally understood as the entry mode...

  11. Exporting Complex Digital Products: Motives and Entry Modes

    DEFF Research Database (Denmark)

    Rask, Morten

    for digital product providers. However other types of entry modes like what wee call direct digital export with F2F-sales, direct digital export with F2F-support and virtual sales subsidiary are entry modes that respond to a higher degree of pre- and after-sales complexity.......When the product is digital, it will most often be distributed directly to the customer through the Internet, and therefore the entry modes, considered in this paper, are different flavors of the entry mode called direct export: Virtual export channel are generally understood as the entry mode...

  12. Exporting Complex Digital Products: Motives and Entry Modes

    DEFF Research Database (Denmark)

    Rask, Morten

    When the product is digital, it will most often be distributed directly to the customer through the Internet, and therefore the entry modes, considered in this paper, are different flavors of the entry mode called direct export: Virtual export channel are generally understood as the entry mode...... for digital product providers. However other types of entry modes like what wee call direct digital export with F2F-sales, direct digital export with F2F-support and virtual sales subsidiary are entry modes that respond to a higher degree of pre- and after-sales complexity....

  13. Exporting Complex Digital Products: Motives and Entry Modes

    DEFF Research Database (Denmark)

    Rask, Morten

    2005-01-01

    When the product is digital, it will most often be distributed directly to the customer through the Internet, and therefore, the entry modes, considered in this paper, are different flavors of the entry mode called direct export: virtual export channel is generally understood as the entry mode...... for digital product providers. However, other types of entry modes like what we call direct digital export with F2F-sales, direct digital export with F2F-support, and virtual sales subsidiary are entry modes that respond to a higher degree of pre- and postsales complexity....

  14. Imaging single retrovirus entry through alternative receptor isoforms and intermediates of virus-endosome fusion.

    Directory of Open Access Journals (Sweden)

    Naveen K Jha

    Full Text Available A large group of viruses rely on low pH to activate their fusion proteins that merge the viral envelope with an endosomal membrane, releasing the viral nucleocapsid. A critical barrier to understanding these events has been the lack of approaches to study virus-cell membrane fusion within acidic endosomes, the natural sites of virus nucleocapsid capsid entry into the cytosol. Here we have investigated these events using the highly tractable subgroup A avian sarcoma and leukosis virus envelope glycoprotein (EnvA-TVA receptor system. Through labeling EnvA pseudotyped viruses with a pH-sensitive fluorescent marker, we imaged their entry into mildly acidic compartments. We found that cells expressing the transmembrane receptor (TVA950 internalized the virus much faster than those expressing the GPI-anchored receptor isoform (TVA800. Surprisingly, TVA800 did not accelerate virus uptake compared to cells lacking the receptor. Subsequent steps of virus entry were visualized by incorporating a small viral content marker that was released into the cytosol as a result of fusion. EnvA-dependent fusion with TVA800-expressing cells occurred shortly after endocytosis and delivery into acidic endosomes, whereas fusion of viruses internalized through TVA950 was delayed. In the latter case, a relatively stable hemifusion-like intermediate preceded the fusion pore opening. The apparent size and stability of nascent fusion pores depended on the TVA isoforms and their expression levels, with TVA950 supporting more robust pores and a higher efficiency of infection compared to TVA800. These results demonstrate that surface receptor density and the intracellular trafficking pathway used are important determinants of efficient EnvA-mediated membrane fusion, and suggest that early fusion intermediates play a critical role in establishing low pH-dependent virus entry from within acidic endosomes.

  15. Contributions of herpes simplex virus type 1 envelope proteins to entry by endocytosis

    Science.gov (United States)

    Herpes simplex virus (HSV) proteins specifically required for endocytic entry but not direct penetration have not been identified. HSVs deleted of gE, gG, gI, gJ, gM, UL45, or Us9 entered cells via either pH-dependent or pH-independent endocytosis and were inactivated by mildly acidic pH. Thus, the ...

  16. Ezrin interacts with the SARS coronavirus Spike protein and restrains infection at the entry stage.

    Directory of Open Access Journals (Sweden)

    Jean Kaoru Millet

    Full Text Available BACKGROUND: Entry of Severe Acute Respiratory Syndrome coronavirus (SARS-CoV and its envelope fusion with host cell membrane are controlled by a series of complex molecular mechanisms, largely dependent on the viral envelope glycoprotein Spike (S. There are still many unknowns on the implication of cellular factors that regulate the entry process. METHODOLOGY/PRINCIPAL FINDINGS: We performed a yeast two-hybrid screen using as bait the carboxy-terminal endodomain of S, which faces the cytosol during and after opening of the fusion pore at early stages of the virus life cycle. Here we show that the ezrin membrane-actin linker interacts with S endodomain through the F1 lobe of its FERM domain and that both the eight carboxy-terminal amino-acids and a membrane-proximal cysteine cluster of S endodomain are important for this interaction in vitro. Interestingly, we found that ezrin is present at the site of entry of S-pseudotyped lentiviral particles in Vero E6 cells. Targeting ezrin function by small interfering RNA increased S-mediated entry of pseudotyped particles in epithelial cells. Furthermore, deletion of the eight carboxy-terminal amino acids of S enhanced S-pseudotyped particles infection. Expression of the ezrin dominant negative FERM domain enhanced cell susceptibility to infection by SARS-CoV and S-pseudotyped particles and potentiated S-dependent membrane fusion. CONCLUSIONS/SIGNIFICANCE: Ezrin interacts with SARS-CoV S endodomain and limits virus entry and fusion. Our data present a novel mechanism involving a cellular factor in the regulation of S-dependent early events of infection.

  17. Ezrin Interacts with the SARS Coronavirus Spike Protein and Restrains Infection at the Entry Stage

    Science.gov (United States)

    Millet, Jean Kaoru; Kien, François; Cheung, Chung-Yan; Siu, Yu-Lam; Chan, Wing-Lim; Li, Huiying; Leung, Hiu-Lan; Jaume, Martial; Bruzzone, Roberto; Malik Peiris, Joseph S.; Altmeyer, Ralf Marius; Nal, Béatrice

    2012-01-01

    Background Entry of Severe Acute Respiratory Syndrome coronavirus (SARS-CoV) and its envelope fusion with host cell membrane are controlled by a series of complex molecular mechanisms, largely dependent on the viral envelope glycoprotein Spike (S). There are still many unknowns on the implication of cellular factors that regulate the entry process. Methodology/Principal Findings We performed a yeast two-hybrid screen using as bait the carboxy-terminal endodomain of S, which faces the cytosol during and after opening of the fusion pore at early stages of the virus life cycle. Here we show that the ezrin membrane-actin linker interacts with S endodomain through the F1 lobe of its FERM domain and that both the eight carboxy-terminal amino-acids and a membrane-proximal cysteine cluster of S endodomain are important for this interaction in vitro. Interestingly, we found that ezrin is present at the site of entry of S-pseudotyped lentiviral particles in Vero E6 cells. Targeting ezrin function by small interfering RNA increased S-mediated entry of pseudotyped particles in epithelial cells. Furthermore, deletion of the eight carboxy-terminal amino acids of S enhanced S-pseudotyped particles infection. Expression of the ezrin dominant negative FERM domain enhanced cell susceptibility to infection by SARS-CoV and S-pseudotyped particles and potentiated S-dependent membrane fusion. Conclusions/Significance Ezrin interacts with SARS-CoV S endodomain and limits virus entry and fusion. Our data present a novel mechanism involving a cellular factor in the regulation of S-dependent early events of infection. PMID:23185364

  18. Assessment of the ATV-1 Re-Entry Observation Campaign for Future Re-Entry Missions

    Science.gov (United States)

    Lips, T.; Lohle, S.; Marynowsky, T.; Rees, D.; Stenbeak-Nielsen, H. C.; Beks, M. L.; Hatton, J.

    2010-09-01

    This paper summarizes the midterm results of the currently ongoing ESA study “Assessment of the ATV-1 Reentry Observation Campaign for Future Re-entry Missions”. The primary objective of this study is to investigate the data obtained during a joint ESA/NASA airborne observation campaign of the destructive re-entry of ATV-1 Jules Verne which occurred on September 29, 2008. The presented results are focused on spectroscopic fragment characterization(material identification), frame-by-frame fragment tracking(manual and automatic) for various video recordings, 3D triangulation of the tracked fragments, and fragment propagation until complete demise or ground impact, including the actual size and location of the ATV-1 debris footprint. Fragment propagation analyses comprise also the derivation of aerodynamic fragment properties and potential delta velocities. These parameters are of high importance for the re-entry safety analysis for ATV-2 Johannes Kepler.

  19. Entry properties and entry inhibitors of a human H7N9 influenza virus.

    Directory of Open Access Journals (Sweden)

    Youhui Si

    Full Text Available The recently identified human infections with a novel avian influenza H7N9 virus in China raise important questions regarding possible risk to humans. However, the entry properties and tropism of this H7N9 virus were poorly understood. Moreover, neuraminidase inhibitor resistant H7N9 isolates were recently observed in two patients and correlated with poor clinical outcomes. In this study, we aimed to elucidate the entry properties of H7N9 virus, design and evaluate inhibitors for H7N9 virus entry. We optimized and developed an H7N9-pseudotyped particle system (H7N9pp that could be neutralized by anti-H7 antibodies and closely mimicked the entry process of the H7N9 virus. Avian, human and mouse-derived cultured cells showed high, moderate and low permissiveness to H7N9pp, respectively. Based on influenza virus membrane fusion mechanisms, a potent anti-H7N9 peptide (P155-185-chol corresponding to the C-terminal ectodomain of the H7N9 hemagglutinin protein was successfully identified. P155-185-chol demonstrated H7N9pp-specific inhibition of infection with IC50 of 0.19 µM. Importantly, P155-185-chol showed significant suppression of A/Anhui/1/2013 H7N9 live virus propagation in MDCK cells and additive effects with NA inhibitors Oseltamivir and Zanamivir. These findings expand our knowledge of the entry properties of the novel H7N9 viruses, and they highlight the potential for developing a new class of inhibitors targeting viral entry for use in the next pandemic.

  20. Entry Properties and Entry Inhibitors of a Human H7N9 Influenza Virus

    OpenAIRE

    Youhui Si; Jianguo Li; Yuqiang Niu; Xiuying Liu; Lili Ren; Li Guo; Min Cheng; Hongli Zhou; Jianwei Wang; Qi Jin; Wei Yang

    2014-01-01

    The recently identified human infections with a novel avian influenza H7N9 virus in China raise important questions regarding possible risk to humans. However, the entry properties and tropism of this H7N9 virus were poorly understood. Moreover, neuraminidase inhibitor resistant H7N9 isolates were recently observed in two patients and correlated with poor clinical outcomes. In this study, we aimed to elucidate the entry properties of H7N9 virus, design and evaluate inhibitors for H7N9 virus e...

  1. Access, entry and researcher-participant position

    DEFF Research Database (Denmark)

    Louw, Arnt Vestergaard

    2015-01-01

    it deals with the research findings that such a research design produced. As well as the methodological issues of researcher access, entry and participant position in the field, this article reports on the following questions: What kinds of implicit expectations of the students are embedded in the way...... the school introduces and initiates the programme? What kinds of effects does this have on the motivation of the students? How do the terms and professional language of the profession work on the individual students in including and excluding ways? These specific descriptions of classroom pedagogy, inspired...

  2. Radiation Database for Earth and Mars Entry

    Science.gov (United States)

    2008-11-17

    d3Πg − a3Πu (0:18;0:33) Fox- Herzberg e3Πg − a3Πu (0:15;0:35) Radiation Database for Earth and Mars Entry RTO-EN-AVT-162 8 - 15 affect a few J...structures of the spectra, namely in lines. This motivates the development of approximate models which do not have the high resolution structures but provide...Dec 1996. [2] L.C. Hartung. Predicting radiative heat transfer in thermo-chemical non-equilibrium flow- fields: theory and user’s manual for the

  3. Evolved Acceleration Guidance for Planetary Entry

    Science.gov (United States)

    Mease, K. D.; Leavitt, J. A.; Ferch, M.

    The U.S. Apollo and Shuttle programs have proven the viability and effectiveness of acceleration guidance. New capabilities have been developed to augment this basic concept. Algorithms have been designed for low lift to drag ratio vehicles and for mid to high lift to drag ratio vehicles. These algorithms have been tested for Mars landing and for earth entry of reusable launch vehicles and have performed well in both cases. Also the trajectory planner has been incorporated into a landing footprint generator that is designed for on-board use.

  4. Reference pricing with endogenous generic entry.

    OpenAIRE

    Kurt R. Brekke; Canta, Chiara; Straume, Odd Rune

    2015-01-01

    In this paper we study the effect of reference pricing on pharmaceutical prices and ex-penditures when generic entry is endogenously determined. We develop a Salop-type model where a brand-name producer competes with generic producers in terms of prices. In the market there are two types of consumers: (i) brand biased consumers who choose between brand-name and generic drugs, and (ii) brand neutral consumers who choose between the different generic drugs. We find that, for a given number of ...

  5. Female entrepreneurial networks and foreign market entry

    DEFF Research Database (Denmark)

    Rosenbaum, Gitte Ohrt

    2017-01-01

    The purpose of this paper is to explore the role of networks in the 116 foreign market entries (FMEs) of women-owned small businesses. A multiple case study based on semi-structured interviews with eight female entrepreneurs in the Danish fashion design industry. The results show that contrary to...... entrepreneurial ventures....... or compromising their work-life balance. The present study’s findings suggest that ICT has a much stronger role in the FME of firms than previously envisioned. The study’s findings also have important implications for policymakers and practitioners charged with promoting the international growth of female...

  6. 77 FR 72715 - Informal Entry Limit and Removal of a Formal Entry Requirement

    Science.gov (United States)

    2012-12-06

    ... increase of the informal entry limit is also consistent with one of the goals of the Beyond the Border... the policy seemed inconsistent with the recent Congressional decision to increase the ad valorem MPFs... this analysis, CBP cannot ascertain with any degree of certainty the specific monetary impacts...

  7. Entry, Descent, and Landing Operations Analysis for the Genesis Entry Capsule

    Science.gov (United States)

    Desai, Prasun N.; Lyons, Daniel T.

    2007-01-01

    On September 8, 2004, the Genesis spacecraft returned to Earth after spending 29 months about the sun-Earth libration point (L1) collecting solar wind particles. Four hours prior to Earth arrival, the sample return capsule containing the samples was released for entry and subsequent landing at the Utah Test and Training Range. This paper provides an overview of the entry, descent, and landing trajectory analysis that was performed during the mission operations phase leading up to final approach to Earth. The final orbit determination solution produced an inertial entry flight-path angle of -8.002 deg (which was the desired nominal value) with a 3-sigma error of +/-0.0274 deg (a third of the requirement). The operations effort accurately delivered the entry capsule to the desired landing site. The final landing location was 8.3 km from the target, and was well within the allowable landing area. Overall, the Earth approach operation procedures worked well and there were no issues (logistically or performance based) that arose. As a result, the process of targeting a capsule from deep space and accurately landing it on Earth was successfully demonstrated.

  8. The Hera Saturn Entry Probe Mission

    CERN Document Server

    Mousis, O; Spilker, T; Venkatapathy, E; Poncy, J; Frampton, R; Coustenis, A; Reh, K; Lebreton, J -P; Fletcher, L N; Hueso, R; Amato, M J; Colaprete, A; Ferri, F; Stam, D; Wurz, P; Atreya, S; Aslam, S; Banfield, D J; Calcutt, S; Fischer, G; Holland, A; Keller, C; Kessler, E; Leese, M; Levacher, P; Morse, A; Munoz, O; Renard, J -B; Sheridan, S; Schmider, F -X; Snik, F; Waite, J H; Bird, M; Cavalié, T; Deleuil, M; Fortney, J; Gautier, D; Guillot, T; Lunine, J I; Marty, B; Nixon, C; Orton, G S; Sanchez-Lavega, A

    2015-01-01

    The Hera Saturn entry probe mission is proposed as an M--class mission led by ESA with a contribution from NASA. It consists of one atmospheric probe to be sent into the atmosphere of Saturn, and a Carrier-Relay spacecraft. In this concept, the Hera probe is composed of ESA and NASA elements, and the Carrier-Relay Spacecraft is delivered by ESA. The probe is powered by batteries, and the Carrier-Relay Spacecraft is powered by solar panels and batteries. We anticipate two major subsystems to be supplied by the United States, either by direct procurement by ESA or by contribution from NASA: the solar electric power system (including solar arrays and the power management and distribution system), and the probe entry system (including the thermal protection shield and aeroshell). Hera is designed to perform in situ measurements of the chemical and isotopic compositions as well as the dynamics of Saturn's atmosphere using a single probe, with the goal of improving our understanding of the origin, formation, and ev...

  9. Mycobacteria entry and trafficking into endothelial cells.

    Science.gov (United States)

    Baltierra-Uribe, Shantal Lizbeth; García-Vásquez, Manuel de Jesús; Castrejón-Jiménez, Nayeli Shantal; Estrella-Piñón, Mayra Patricia; Luna-Herrera, Julieta; García-Pérez, Blanca Estela

    2014-09-01

    Endothelial cells are susceptible to infection by mycobacteria, but the endocytic mechanisms that mycobacteria exploit to enter host cells and their mechanisms of intracellular transport are completely unknown. Using pharmacological inhibitors, we determined that the internalization of Mycobacterium tuberculosis (MTB), Mycobacterium smegmatis (MSM), and Mycobacterium abscessus (MAB) is dependent on the cytoskeleton and is differentially inhibited by cytochalasin D, nocodazole, cycloheximide, wortmannin, and amiloride. Using confocal microscopy, we investigated their endosomal trafficking by analyzing Rab5, Rab7, LAMP-1, and cathepsin D. Our results suggest that MSM exploits macropinocytosis to enter endothelial cells and that the vacuoles containing these bacteria fuse with lysosomes. Conversely, the entry of MTB seems to depend on more than one endocytic route, and the observation that only a subset of the intracellular bacilli was associated with phagolysosomes suggests that these bacteria are able to inhibit endosomal maturation to persist intracellularly. The route of entry for MAB depends mainly on microtubules, which suggests that MAB uses a different trafficking pathway. However, MAB is also able to inhibit endosomal maturation and can replicate intracellularly. Together, these findings provide the first evidence that mycobacteria modulate proteins of host endothelial cells to enter and persist within these cells.

  10. Text Entry by Gazing and Smiling

    Directory of Open Access Journals (Sweden)

    Outi Tuisku

    2013-01-01

    Full Text Available Face Interface is a wearable prototype that combines the use of voluntary gaze direction and facial activations, for pointing and selecting objects on a computer screen, respectively. The aim was to investigate the functionality of the prototype for entering text. First, three on-screen keyboard layout designs were developed and tested (n=10 to find a layout that would be more suitable for text entry with the prototype than traditional QWERTY layout. The task was to enter one word ten times with each of the layouts by pointing letters with gaze and select them by smiling. Subjective ratings showed that a layout with large keys on the edge and small keys near the center of the keyboard was rated as the most enjoyable, clearest, and most functional. Second, using this layout, the aim of the second experiment (n=12 was to compare entering text with Face Interface to entering text with mouse. The results showed that text entry rate for Face Interface was 20 characters per minute (cpm and 27 cpm for the mouse. For Face Interface, keystrokes per character (KSPC value was 1.1 and minimum string distance (MSD error rate was 0.12. These values compare especially well with other similar techniques.

  11. Structural correlates of rotavirus cell entry.

    Directory of Open Access Journals (Sweden)

    Aliaa H Abdelhakim

    2014-09-01

    Full Text Available Cell entry by non-enveloped viruses requires translocation into the cytosol of a macromolecular complex--for double-strand RNA viruses, a complete subviral particle. We have used live-cell fluorescence imaging to follow rotavirus entry and penetration into the cytosol of its ∼ 700 Å inner capsid particle ("double-layered particle", DLP. We label with distinct fluorescent tags the DLP and each of the two outer-layer proteins and track the fates of each species as the particles bind and enter BSC-1 cells. Virions attach to their glycolipid receptors in the host cell membrane and rapidly become inaccessible to externally added agents; most particles that release their DLP into the cytosol have done so by ∼ 10 minutes, as detected by rapid diffusional motion of the DLP away from residual outer-layer proteins. Electron microscopy shows images of particles at various stages of engulfment into tightly fitting membrane invaginations, consistent with the interpretation that rotavirus particles drive their own uptake. Electron cryotomography of membrane-bound virions also shows closely wrapped membrane. Combined with high resolution structural information about the viral components, these observations suggest a molecular model for membrane disruption and DLP penetration.

  12. Analytic Development of a Reference Profile for the First Entry in a Skip Atmospheric Entry

    Science.gov (United States)

    Garcia-Llama, Eduardo

    2010-01-01

    This note shows that a feasible reference drag profile for the first entry portion of a skip entry can be generated as a polynomial expression of the velocity. The coefficients of that polynomial are found through the resolution of a system composed of m + 1 equations, where m is the degree of the drag polynomial. It has been shown that a minimum of five equations (m = 4) are required to establish the range and the initial and final conditions on velocity and flight path angle. It has been shown that at least one constraint on the trajectory can be imposed through the addition of one extra equation in the system, which must be accompanied by the increase in the degree of the drag polynomial. In order to simplify the resolution of the system of equations, the drag was considered as being a probability density function of the velocity, with the velocity as a distribution function of the drag. Combining this notion with the introduction of empirically derived constants, it has been shown that the system of equations required to generate the drag profile can be successfully reduced to a system of linear algebraic equations. For completeness, the resulting drag profiles have been flown using the feedback linearization method of differential geometric control as a guidance law with the error dynamics of a second order homogeneous equation in the form of a damped oscillator. Satisfactory results were achieved when the gains in the error dynamics were changed at a certain point along the trajectory that is dependent on the velocity and the curvature of the drag as a function of the velocity. Future work should study the capacity to update the drag profile in flight when dispersions are introduced. Also, future studies should attempt to link the first entry, as presented and controlled in this note, with a more standard control concept for the second entry, such as the Apollo entry guidance, to try to assess the overall skip entry performance. A guidance law that includes

  13. Orthopoxvirus species and strain differences in cell entry

    Energy Technology Data Exchange (ETDEWEB)

    Bengali, Zain; Satheshkumar, P.S. [Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892-3210 (United States); Moss, Bernard, E-mail: bmoss@nih.gov [Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892-3210 (United States)

    2012-11-25

    Vaccinia virus (VACV) enters cells by a low pH endosomal route or by direct fusion with the plasma membrane. We previously found differences in entry properties of several VACV strains: entry of WR was enhanced by low pH, reduced by bafilomycin A1 and relatively unaffected by heparin, whereas entry of IHD-J, Copenhagen and Elstree were oppositely affected. Since binding and entry modes may have been selected by specific conditions of in vitro propagation, we now examined the properties of three distinct, recently isolated cowpox viruses and a monkeypox virus as well as additional VACV and cowpox virus strains. The recent isolates were more similar to WR than to other VACV strains, underscoring the biological importance of endosomal entry by orthopoxviruses. Sequence comparisons, gene deletions and gene swapping experiments indicated that viral determinants, other than or in addition to the A26 and A25 'fusion-suppressor' proteins, impact entry properties.

  14. Mid-L/D Lifting Body Entry Demise Analysis

    Science.gov (United States)

    Ling, Lisa

    2017-01-01

    The mid-lift-to-drag ratio (mid-L/D) lifting body is a fully autonomous spacecraft under design at NASA for enabling a rapid return of scientific payloads from the International Space Station (ISS). For contingency planning and risk assessment for the Earth-return trajectory, an entry demise analysis was performed to examine three potential failure scenarios: (1) nominal entry interface conditions with loss of control, (2) controlled entry at maximum flight path angle, and (3) controlled entry at minimum flight path angle. The objectives of the analysis were to predict the spacecraft breakup sequence and timeline, determine debris survival, and calculate the debris dispersion footprint. Sensitivity analysis was also performed to determine the effect of the initial pitch rate on the spacecraft stability and breakup during the entry. This report describes the mid-L/D lifting body and presents the results of the entry demise and sensitivity analyses.

  15. Aspirin inhibits hepatitis C virus entry by downregulating claudin-1.

    Science.gov (United States)

    Yin, P; Zhang, L

    2016-01-01

    Aspirin has previously been reported to inhibit hepatitis C virus (HCV) replication. The aim of this study was to investigate whether aspirin is involved in blocking HCV entry. We found that aspirin inhibits the entry of HCVpp and infectious HCV. The level of claudin-1, an HCV receptor, is reduced by aspirin. Our results extend the anti-HCV effect of aspirin to the HCV entry step and further reinforce the anti-HCV role of aspirin.

  16. Methodological aspects of journaling a dynamic adjusting entry model

    Directory of Open Access Journals (Sweden)

    Vlasta Kašparovská

    2011-01-01

    Full Text Available This paper expands the discussion of the importance and function of adjusting entries for loan receivables. Discussion of the cyclical development of adjusting entries, their negative impact on the business cycle and potential solutions has intensified during the financial crisis. These discussions are still ongoing and continue to be relevant to members of the professional public, banking regulators and representatives of international accounting institutions. The objective of this paper is to evaluate a method of journaling dynamic adjusting entries under current accounting law. It also expresses the authors’ opinions on the potential for consistently implementing basic accounting principles in journaling adjusting entries for loan receivables under a dynamic model.

  17. An Integrated Approach for Entry Mission Design and Flight Simulations

    Science.gov (United States)

    Lu, Ping; Rao, Prabhakara

    2004-01-01

    An integrated approach for entry trajectory design, guidance, and simulation is proposed. The key ingredients for this approach are an on-line 3 degree-of-freedom entry trajectory planning algorithm and the entry guidance algorithm that generates the guidance gains automatically. When fully developed, such a tool could enable end-bend entry mission design and simulations in 3DOF and 6DOF mode from de-orbit burn to the TAEM interface and beyond, all in one key stroke. Some preliminary examples of such a capability are presented in this paper that demonstrate the potential of this type of integrated environment.

  18. A novel peptide that inhibits HIV-1 entry

    Institute of Scientific and Technical Information of China (English)

    YU Yong; HUANG Xiaoxing; WANG Qiong; YANG Yaling; TIAN Po; ZHANG Wentao

    2004-01-01

    @@ The global epidemic of HIV infection, the cause of AIDS, has created an urgent need for novel classes of antiretroviral agent. Besides reverse transcriptase and protease, the viral entry process provides new anti-HIV-1 targets. A new generation of antiviral drugs intended to block HIV entry into host cells is now under develop- ment[1]. These compounds are generally referred to as fusion or entry inhibitor. Several HIV-1 entry inhibitors that target CD4-gp120 interactions, co-receptor function, and gp41-mediated membrane fusion are in different stages of clinical development[2].

  19. Evaluation of potential genotoxicity of HIV entry inhibitors derived from natural sources.

    Science.gov (United States)

    Paskaleva, Elena E; Arra, Manoj; Liu, Yanze; Guo, Huijun; Swartz, Glenn; Kennedy, Jeffrey S; Breneman, Curt; Shekhtman, Alexander; Canki, Mario

    2014-01-01

    AIDS is a global pandemic that has seen the development of novel and effective treatments to improve the quality of life of those infected and reduction of spread of the disease. Palmitic Acid (PA), which we identified and isolated from Sargassum fusiforme, is a naturally occurring fatty acid that specifically inhibits HIV entry by binding to a novel pocket on the CD4 receptor. We also identified a structural analogue, 2-bromopalmitate (2-BP), as a more effective HIV entry inhibitor with a 20-fold increase in efficacy. We have used the structure-activity relationship (SAR) of 2-BP as a platform to identify new small chemical molecules that fit into the various identified active sites in an effort to identify more potent CD4 entry inhibitors. To validate further drug development, we tested the PA and 2-BP scaffold molecules for genotoxic potential. The FDA and International Conference on Harmonisation (ICH) recommends using a standardized 3-test battery for testing compound genotoxicity consisting of the bacterial reverse mutation assay, mouse lymphoma assay, and rat micronucleus assay. PA and 2-BP and their metabolites tested negative in all three genotoxicty tests. 2-BP is the first derivative of PA to undergo pre-clinical screening, which will enable us to now test multiple simultaneous small chemical structures based on activity in scaffold modeling across the dimension of pre-clinical testing to enable transition to human testing.

  20. Evaluation of potential genotoxicity of HIV entry inhibitors derived from natural sources.

    Directory of Open Access Journals (Sweden)

    Elena E Paskaleva

    Full Text Available AIDS is a global pandemic that has seen the development of novel and effective treatments to improve the quality of life of those infected and reduction of spread of the disease. Palmitic Acid (PA, which we identified and isolated from Sargassum fusiforme, is a naturally occurring fatty acid that specifically inhibits HIV entry by binding to a novel pocket on the CD4 receptor. We also identified a structural analogue, 2-bromopalmitate (2-BP, as a more effective HIV entry inhibitor with a 20-fold increase in efficacy. We have used the structure-activity relationship (SAR of 2-BP as a platform to identify new small chemical molecules that fit into the various identified active sites in an effort to identify more potent CD4 entry inhibitors. To validate further drug development, we tested the PA and 2-BP scaffold molecules for genotoxic potential. The FDA and International Conference on Harmonisation (ICH recommends using a standardized 3-test battery for testing compound genotoxicity consisting of the bacterial reverse mutation assay, mouse lymphoma assay, and rat micronucleus assay. PA and 2-BP and their metabolites tested negative in all three genotoxicty tests. 2-BP is the first derivative of PA to undergo pre-clinical screening, which will enable us to now test multiple simultaneous small chemical structures based on activity in scaffold modeling across the dimension of pre-clinical testing to enable transition to human testing.

  1. Protease Inhibitors Targeting Coronavirus and Filovirus Entry

    Science.gov (United States)

    Zhou, Yanchen; Vedantham, Punitha; Lu, Kai; Agudelo, Juliet; Carrion, Ricardo; Nunneley, Jerritt W.; Barnard, Dale; Pöhlmann, Stefan; McKerrow, James H.; Renslo, Adam R.; Simmons, Graham

    2016-01-01

    In order to gain entry into cells, diverse viruses, including Ebola virus, SARS-coronavirus and the emerging MERS-coronavirus, depend on activation of their envelope glycoproteins by host cell proteases. The respective enzymes are thus excellent targets for antiviral intervention. In cell culture, activation of Ebola virus, as well as SARS- and MERS-coronavirus can be accomplished by the endosomal cysteine proteases, cathepsin L (CTSL) and cathepsin B (CTSB). In addition, SARS- and MERS-coronavirus can use serine proteases localized at the cell surface, for their activation. However, it is currently unclear which protease(s) facilitate viral spread in the infected host. We report here that the cysteine protease inhibitor K11777, ((2S)-N-[(1E,3S)-1-(benzenesulfonyl)-5-phenylpent-1-en-3-yl]-2-{[(E)-4-methylpiperazine-1-carbonyl]amino}-3-phenylpropanamide) and closely-related vinylsulfones act as broad-spectrum antivirals by targeting cathepsin-mediated cell entry. K11777 is already in advanced stages of development for a number of parasitic diseases, such as Chagas disease, and has proven to be safe and effective in a range of animal models. K11777 inhibition of SARS-CoV and Ebola virus entry was observed in the sub-nanomolar range. In order to assess, whether cysteine or serine proteases promote viral spread in the host, we compared the antiviral activity of an optimized K11777-derivative with that of camostat, an inhibitor of TMPRSS2 and related serine proteases. Employing a pathogenic animal model of SARS-CoV infection, we demonstrated that viral spread and pathogenesis of SARS-CoV is driven by serine rather than cysteine proteases and can be effectively prevented by camostat. Camostat has been clinically used to treat chronic pancreatitis, and thus represents an exciting potential therapeutic for respiratory coronavirus infections. Our results indicate that camostat, or similar serine protease inhibitors, might be an effective option for treatment of SARS and

  2. Heatshield for Extreme Entry Environment Technology (HEEET)

    Science.gov (United States)

    Venkatapathy, E.; Ellerby, D.; Stackpoole, M..; Peterson, K.; Gage, P.; Beerman, A.; Blosser, M.; Chinnapongse, R.; Dillman, R.; Feldman, J.; Gasch, M.; Munk, M.; Prabhu, D.; Poteet, C.

    2013-01-01

    Heat-shield for Extreme Entry Technology (HEEET) project is based on the 3-D Woven TPS, an emerging innovative and game changing technology funded by SMD and STMD to fill the ablative TPS gap that exists currently for reaching the depths of Saturn and Venus. Woven TPS technology will address the challenges currently faced by the Venus, Saturn, and higher speed sample return mission Science community due to lack of availability of the only TPS, namely Carbon Phenolic and enable the Science community to move forward with proposals in this decade with Woven TPS. This presentation describes the approach in maturing the technology in the next three years enabling NF-4 mission proposers to address the challenges of Venus, Saturn or higher speed sample return missions.

  3. Lattice Boltzmann modeling of water entry problems

    Science.gov (United States)

    Zarghami, A.; Falcucci, G.; Jannelli, E.; Succi, S.; Porfiri, M.; Ubertini, S.

    2014-12-01

    This paper deals with the simulation of water entry problems using the lattice Boltzmann method (LBM). The dynamics of the free surface is treated through the mass and momentum fluxes across the interface cells. A bounce-back boundary condition is utilized to model the contact between the fluid and the moving object. The method is implemented for the analysis of a two-dimensional flow physics produced by a symmetric wedge entering vertically a weakly-compressible fluid at a constant velocity. The method is used to predict the wetted length, the height of water pile-up, the pressure distribution and the overall force on the wedge. The accuracy of the numerical results is demonstrated through comparisons with data reported in the literature.

  4. Are entry criteria for cataract surgery justified?

    Directory of Open Access Journals (Sweden)

    Daniel Böhringer

    Full Text Available PURPOSE: The German Ophthalmological Society (GOS recently proposed surgical entry criteria, i.e. 300 cataract surgeries. We herein correlate the surgical hands-on experience with the risk of posterior capsule ruptures in order to assess whether this number is appropriate. METHODS: We identified all cataract operations that had been performed at the University Eye Hospital Freiburg since 1995. For each surgeon, we assigned a running number to his/her procedures in the order they had been performed. Thereafter, we excluded all combined procedures and the second eyes. We then selected the 5475 surgical reports between November 2008 and November 2012 for detailed review. We additionally classified each surgery into low- vs. high- à priori risk for posterior capsule ruptures. We fitted a multifactorial logistic regression model to assess the GOS recommendation of 300 surgeries under supervision. In the low-risk group, we additionally visualized the 'typical' learning curve by plotting the posterior capsule ruptures against the respective rank numbers. RESULTS: The odds ratio for posterior capsule ruptures of 'learning-mode' (one of the respective surgeon's 300 first procedures vs. the non-learning-mode was 3.8 (p<0.0001. By contrast, classification into the low-risk group lowered the risk of posterior capsule ruptures three fold (p<0.0001. According to the low-risk plot, the surgeons started with a complication rate of 4% and continuously improved towards 0.5% after 1500 operations. Thereafter, the rate increased again and stabilized around one percent. CONCLUSION: The learning curve with respect to posterior capsule ruptures is surprisingly flat. The GOS entry criterion of 300 cataract procedures is therefore most likely justified. Careful selection of low-risk patients for the training surgeons may help in reducing the rate of posterior capsule ruptures during training.

  5. The Hera Saturn entry probe mission

    Science.gov (United States)

    Mousis, O.; Atkinson, D. H.; Spilker, T.; Venkatapathy, E.; Poncy, J.; Frampton, R.; Coustenis, A.; Reh, K.; Lebreton, J.-P.; Fletcher, L. N.; Hueso, R.; Amato, M. J.; Colaprete, A.; Ferri, F.; Stam, D.; Wurz, P.; Atreya, S.; Aslam, S.; Banfield, D. J.; Calcutt, S.; Fischer, G.; Holland, A.; Keller, C.; Kessler, E.; Leese, M.; Levacher, P.; Morse, A.; Muñoz, O.; Renard, J.-B.; Sheridan, S.; Schmider, F.-X.; Snik, F.; Waite, J. H.; Bird, M.; Cavalié, T.; Deleuil, M.; Fortney, J.; Gautier, D.; Guillot, T.; Lunine, J. I.; Marty, B.; Nixon, C.; Orton, G. S.; Sánchez-Lavega, A.

    2016-10-01

    The Hera Saturn entry probe mission is proposed as an M-class mission led by ESA with a contribution from NASA. It consists of one atmospheric probe to be sent into the atmosphere of Saturn, and a Carrier-Relay spacecraft. In this concept, the Hera probe is composed of ESA and NASA elements, and the Carrier-Relay Spacecraft is delivered by ESA. The probe is powered by batteries, and the Carrier-Relay Spacecraft is powered by solar panels and batteries. We anticipate two major subsystems to be supplied by the United States, either by direct procurement by ESA or by contribution from NASA: the solar electric power system (including solar arrays and the power management and distribution system), and the probe entry system (including the thermal protection shield and aeroshell). Hera is designed to perform in situ measurements of the chemical and isotopic compositions as well as the dynamics of Saturn's atmosphere using a single probe, with the goal of improving our understanding of the origin, formation, and evolution of Saturn, the giant planets and their satellite systems, with extrapolation to extrasolar planets. Hera's aim is to probe well into the cloud-forming region of the troposphere, below the region accessible to remote sensing, to the locations where certain cosmogenically abundant species are expected to be well mixed. By leading to an improved understanding of the processes by which giant planets formed, including the composition and properties of the local solar nebula at the time and location of giant planet formation, Hera will extend the legacy of the Galileo and Cassini missions by further addressing the creation, formation, and chemical, dynamical, and thermal evolution of the giant planets, the entire solar system including Earth and the other terrestrial planets, and formation of other planetary systems.

  6. Coupling approaches used in atmospheric entry models

    Science.gov (United States)

    Gritsevich, M. I.

    2012-09-01

    While a planet orbits the Sun, it is subject to impact by smaller objects, ranging from tiny dust particles and space debris to much larger asteroids and comets. Such collisions have taken place frequently over geological time and played an important role in the evolution of planets and the development of life on the Earth. Though the search for near-Earth objects addresses one of the main points of the Asteroid and Comet Hazard, one should not underestimate the useful information to be gleaned from smaller atmospheric encounters, known as meteors or fireballs. Not only do these events help determine the linkages between meteorites and their parent bodies; due to their relative regularity they provide a good statistical basis for analysis. For successful cases with found meteorites, the detailed atmospheric path record is an excellent tool to test and improve existing entry models assuring the robustness of their implementation. There are many more important scientific questions meteoroids help us to answer, among them: Where do these objects come from, what are their origins, physical properties and chemical composition? What are the shapes and bulk densities of the space objects which fully ablate in an atmosphere and do not reach the planetary surface? Which values are directly measured and which are initially assumed as input to various models? How to couple both fragmentation and ablation effects in the model, taking real size distribution of fragments into account? How to specify and speed up the recovery of a recently fallen meteorites, not letting weathering to affect samples too much? How big is the pre-atmospheric projectile to terminal body ratio in terms of their mass/volume? Which exact parameters beside initial mass define this ratio? More generally, how entering object affects Earth's atmosphere and (if applicable) Earth's surface? How to predict these impact consequences based on atmospheric trajectory data? How to describe atmospheric entry

  7. Passive Earth Entry Vehicle Landing Test

    Science.gov (United States)

    Kellas, Sotiris

    2017-01-01

    Two full-scale passive Earth Entry Vehicles (EEV) with realistic structure, surrogate sample container, and surrogate Thermal Protection System (TPS) were built at NASA Langley Research Center (LaRC) and tested at the Utah Test and Training Range (UTTR). The main test objective was to demonstrate structural integrity and investigate possible impact response deviations of the realistic vehicle as compared to rigid penetrometer responses. With the exception of the surrogate TPS and minor structural differences in the back shell construction, the two test vehicles were identical in geometry and both utilized the Integrated Composite Stiffener Structure (ICoSS) structural concept in the forward shell. The ICoSS concept is a lightweight and highly adaptable composite concept developed at NASA LaRC specifically for entry vehicle TPS carrier structures. The instrumented test vehicles were released from a helicopter approximately 400 m above ground. The drop height was selected such that at least 98% of the vehicles terminal velocity would be achieved. While drop tests of spherical penetrometers and a low fidelity aerodynamic EEV model were conducted at UTTR in 1998 and 2000, this was the first time a passive EEV with flight-like structure, surrogate TPS, and sample container was tested at UTTR for the purpose of complete structural system validation. Test results showed that at a landing vertical speed of approximately 30 m/s, the test vehicle maintained structural integrity and enough rigidity to penetrate the sandy clay surface thus attenuating the landing load, as measured at the vehicle CG, to less than 600 g. This measured deceleration was found to be in family with rigid penetrometer test data from the 1998 and 2000 test campaigns. Design implications of vehicle structure/soil interaction with respect to sample container and sample survivability are briefly discussed.

  8. The Curious Case of Arenavirus Entry, and Its Inhibition

    Directory of Open Access Journals (Sweden)

    Joanne York

    2012-01-01

    Full Text Available Arenaviruses comprise a diverse family of enveloped negative-strand RNA viruses that are endemic to specific rodent hosts worldwide. Several arenaviruses cause severe hemorrhagic fevers in humans, including Junín and Machupo viruses in South America and Lassa fever virus in western Africa. Arenavirus entry into the host cell is mediated by the envelope glycoprotein complex, GPC. The virion is endocytosed on binding to a cell-surface receptor, and membrane fusion is initiated in response to physiological acidification of the endosome. As with other class I virus fusion proteins, GPC-mediated membrane fusion is promoted through a regulated sequence of conformational changes leading to formation of the classical postfusion trimer-of-hairpins structure. GPC is, however, unique among the class I fusion proteins in that the mature complex retains a stable signal peptide (SSP as a third subunit, in addition to the canonical receptor-binding and fusion proteins. We will review the curious properties of the tripartite GPC complex and describe evidence that SSP interacts with the fusion subunit to modulate pH-induced activation of membrane fusion. This unusual solution to maintaining the metastable prefusion state of GPC on the virion and activating the class I fusion cascade at acidic pH provides novel targets for antiviral intervention.

  9. Entry, Descent, and Landing Operations Analysis for the Stardust Entry Capsule

    Science.gov (United States)

    Desai, Prasun N.; Lyons, Dan T.; Tooley, Jeff; Kangas, Julie

    2008-01-01

    On the morning of January 15, 2006, the Stardust capsule successfully landed at the Utah Test and Training range in northwest Utah returning cometary samples from the comet Wild-2. An overview of the entry, descent, and landing (EDL) trajectory analysis that was performed for targeting during the mission operations phase upon final approach to Earth is described. The final orbit determination solution produced an inertial entry flight-path angle of -8.21 deg (the desired nominal value) with a 3-sigma uncertainty of +/-0.0017 deg (2% of the requirement). The navigation and EDL operations effort accurately delivered the entry capsule to the desired landing site. The final landing location was 8.1 km from the target, which was well within the allowable landing area. Overall, the Earth approach operation procedures worked well and there were no issues (logistically or performance based) that arose. As a result, the process of targeting a capsule from an interplanetary trajectory and accurately landing it on Earth was successfully demonstrated.

  10. 19 CFR 145.24 - Amendment of entry.

    Science.gov (United States)

    2010-04-01

    ... director is satisfied that the objection is valid and timely, he shall amend the mail entry. If the duty... 19 Customs Duties 2 2010-04-01 2010-04-01 false Amendment of entry. 145.24 Section 145.24 Customs Duties U.S. CUSTOMS AND BORDER PROTECTION, DEPARTMENT OF HOMELAND SECURITY; DEPARTMENT OF THE...

  11. 19 CFR 4.35 - Unlading outside port of entry.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 1 2010-04-01 2010-04-01 false Unlading outside port of entry. 4.35 Section 4.35 Customs Duties U.S. CUSTOMS AND BORDER PROTECTION, DEPARTMENT OF HOMELAND SECURITY; DEPARTMENT OF THE... of entry. (a) Upon written application from the interested party, the port director concerned, if...

  12. Strategic advantage and the optimal exercise of entry options

    NARCIS (Netherlands)

    E.C. Perotti; S. Rossetto

    2001-01-01

    We investigate the timing and the valuation of strategic investment aimed at enhancing entry opportunities in related market segments. As demand is uncertain, entry options should be exercised at the optimal time, trading off the market share gain against the option to wait until more information is

  13. The Importance of Prior Probabilities for Entry Page Search

    NARCIS (Netherlands)

    Kraaij, W.; Westerveld, T.H.W.; Hiemstra, D.

    2002-01-01

    An important class of searches on the world-wide-web has the goal to find an entry page (homepage) of an organisation. Entry page search is quite different from Ad Hoc search. Indeed a plain Ad Hoc system performs disappointingly. We explored three non-content features of web pages: page length, num

  14. 18 CFR 33.5 - Proposed accounting entries.

    Science.gov (United States)

    2010-04-01

    ... 18 Conservation of Power and Water Resources 1 2010-04-01 2010-04-01 false Proposed accounting... § 33.5 Proposed accounting entries. If the applicant is required to maintain its books of account in... present proposed accounting entries showing the effect of the transaction with sufficient detail...

  15. 15 CFR 2011.204 - Entry of specialty sugars.

    Science.gov (United States)

    2010-01-01

    ... 15 Commerce and Foreign Trade 3 2010-01-01 2010-01-01 false Entry of specialty sugars. 2011.204... UNITED STATES TRADE REPRESENTATIVE ALLOCATION OF TARIFF-RATE QUOTA ON IMPORTED SUGARS, SYRUPS AND MOLASSES Specialty Sugar § 2011.204 Entry of specialty sugars. An importer or the importer's agent...

  16. Strategic advantage and the optimal exercise of entry options

    NARCIS (Netherlands)

    Perotti, E.C.; Rossetto, S.

    2001-01-01

    We investigate the timing and the valuation of strategic investment aimed at enhancing entry opportunities in related market segments. As demand is uncertain, entry options should be exercised at the optimal time, trading off the market share gain against the option to wait until more information is

  17. Racial/Ethnic Disparities in ADHD Diagnosis by Kindergarten Entry

    Science.gov (United States)

    Morgan, Paul L.; Hillemeier, Marianne M.; Farkas, George; Maczuga, Steve

    2014-01-01

    Background: Whether and to what extent racial/ethnic disparities in attention-deficit/hyperactivity disorder (ADHD) diagnosis occur by kindergarten entry is currently unknown. We investigated risk factors associated with an ADHD diagnosis by kindergarten entry generally, and specifically whether racial/ethnic disparities in ADHD diagnosis occur by…

  18. Foreign Bank Entry and Credit Allocation in Emerging Markets

    NARCIS (Netherlands)

    Degryse, H.A.; Havrylchyk, O.; Jurzyk, E.; Kozak, S.

    2009-01-01

    We employ a unique data set containing bank-specific information to explore how foreign bank entry determines credit allocation in emerging markets. We investigate the impact of the mode of foreign entry (greenfield or takeover) on banks’ portfolio allocation to borrowers with different degrees of

  19. Foreign Bank Entry and Credit Allocation in Emerging Markets

    NARCIS (Netherlands)

    Degryse, H.A.; Havrylchyk, O.; Jurzyk, E.; Kozak, S.

    2009-01-01

    We employ a unique data set containing bank-specific information to explore how foreign bank entry determines credit allocation in emerging markets. We investigate the impact of the mode of foreign entry (greenfield or takeover) on banks’ portfolio allocation to borrowers with different degrees of i

  20. Racial/Ethnic Disparities in ADHD Diagnosis by Kindergarten Entry

    Science.gov (United States)

    Morgan, Paul L.; Hillemeier, Marianne M.; Farkas, George; Maczuga, Steve

    2014-01-01

    Background: Whether and to what extent racial/ethnic disparities in attention-deficit/hyperactivity disorder (ADHD) diagnosis occur by kindergarten entry is currently unknown. We investigated risk factors associated with an ADHD diagnosis by kindergarten entry generally, and specifically whether racial/ethnic disparities in ADHD diagnosis occur by…

  1. 19 CFR 146.64 - Entry for warehouse.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Entry for warehouse. 146.64 Section 146.64 Customs... (CONTINUED) FOREIGN TRADE ZONES Transfer of Merchandise From a Zone § 146.64 Entry for warehouse. (a) Foreign... status may not be entered for warehouse from a zone. Merchandise in nonprivileged foreign...

  2. 19 CFR 151.63 - Information on entry summary.

    Science.gov (United States)

    2010-04-01

    ... estimated or actual net weight of the wool or hair in its condition as imported, its total estimated clean... THE TREASURY (CONTINUED) EXAMINATION, SAMPLING, AND TESTING OF MERCHANDISE Wool and Hair § 151.63 Information on entry summary. Each entry summary covering wool or hair subject to duty at a rate per...

  3. 31 CFR 357.0 - Book-entry systems.

    Science.gov (United States)

    2010-07-01

    ... non-Internet-based book-entry system maintained by Treasury for purchasing and holding marketable...) TreasuryDirect ®. TreasuryDirect is a book-entry, online system maintained by the Department of the Treasury for purchasing and holding eligible marketable Treasury securities, United States Savings...

  4. 19 CFR 146.63 - Entry for consumption.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Entry for consumption. 146.63 Section 146.63... TREASURY (CONTINUED) FOREIGN TRADE ZONES Transfer of Merchandise From a Zone § 146.63 Entry for consumption... status may be entered for consumption from a zone. (b) Zone-restricted merchandise. Merchandise in a zone...

  5. A targeted functional RNA interference screen uncovers glypican 5 as an entry factor for hepatitis B and D viruses.

    Science.gov (United States)

    Verrier, Eloi R; Colpitts, Che C; Bach, Charlotte; Heydmann, Laura; Weiss, Amélie; Renaud, Mickaël; Durand, Sarah C; Habersetzer, François; Durantel, David; Abou-Jaoudé, Georges; López Ledesma, Maria M; Felmlee, Daniel J; Soumillon, Magali; Croonenborghs, Tom; Pochet, Nathalie; Nassal, Michael; Schuster, Catherine; Brino, Laurent; Sureau, Camille; Zeisel, Mirjam B; Baumert, Thomas F

    2016-01-01

    Chronic hepatitis B and D infections are major causes of liver disease and hepatocellular carcinoma worldwide. Efficient therapeutic approaches for cure are absent. Sharing the same envelope proteins, hepatitis B virus and hepatitis delta virus use the sodium/taurocholate cotransporting polypeptide (a bile acid transporter) as a receptor to enter hepatocytes. However, the detailed mechanisms of the viral entry process are still poorly understood. Here, we established a high-throughput infectious cell culture model enabling functional genomics of hepatitis delta virus entry and infection. Using a targeted RNA interference entry screen, we identified glypican 5 as a common host cell entry factor for hepatitis B and delta viruses. These findings advance our understanding of virus cell entry and open new avenues for curative therapies. As glypicans have been shown to play a role in the control of cell division and growth regulation, virus-glypican 5 interactions may also play a role in the pathogenesis of virus-induced liver disease and cancer. © 2015 by the American Association for the Study of Liver Diseases.

  6. Extended High-Gain Observer for Mars Entry Guidance

    Directory of Open Access Journals (Sweden)

    Pingyuan Cui

    2013-02-01

    Full Text Available To deliver a Mars entry vehicle to the prescribed parachute deployment point, active entry guidance is essential. This paper addresses the problem of Mars atmospheric entry guidance through drag tracking method with extended high gain observer. First, an extended high gain observer combined with feedback linearization is applied in drag tracking for Mars entry longitudinal guidance.  The observer estimates the drag and drag rate for drag tracking, estimates the perturbation due to model uncertainty and disturbance, and compensate for the perturbation by canceling its estimate. Then, bank reversal is adopted in the lateral plane to reduce the cross-range error. Finally, Mars entry simulation is performed to assess the performance of the adaptive guidance law. The results demonstrate that the proposed guidance law exhibits good performance.

  7. Strategic Orientation and Order of Market Entry of Food Firms

    Directory of Open Access Journals (Sweden)

    rasoul ghollamzadeh

    2011-12-01

    One of the strategic launch decisions is the order of market entry. Adoption of a suitable competitive strategy is dependent on firm's decision on market entry earlier or later than competitors. This research aims to analyze the relationship between order of market entry and firms’ strategic orientation. For this purpose, three strategies have been defined as cost leadership strategy, innovation differentiation strategy and marketing differentiation strategy. In this study, the essential question is whether firms use a different strategy based on their order of market entry? The proposed model has been examined on a sample of 102 manufacturing companies in the food industry using Structural Equation Modeling based on the methodology of Partial Least Squares (PLS. Findings indicate a direct influence of order of market entry on adopting a particular strategy by the firms, so that pioneer companies tend more to use differentiation strategy at two levels of marketing and innovation, while cost leadership is more common among followers.

  8. Strategic Orientation and Order of Market Entry of Food Firms

    Directory of Open Access Journals (Sweden)

    Rasoul Ghollamzadeh

    2011-01-01

    Full Text Available One of the strategic launch decisions is the order of market entry. Adoption of a suitable competitive strategy is dependent on firm's decision on market entry earlier or later than competitors. This research aims to analyze the relationship between order of market entry and firms’ strategic orientation. For this purpose, three strategies have been defined as cost leadership strategy, innovation differentiation strategy and marketing differentiation strategy. In this study, the essential question is whether firms use a different strategy based on their order of market entry? The proposed model has been examined on a sample of 102 manufacturing companies in the food industry using Structural Equation Modeling based on the methodology of Partial Least Squares (PLS. Findings indicate a direct influence of order of market entry on adopting a particular strategy by the firms, so that pioneer companies tend more to use differentiation strategy at two levels of marketing and innovation, while cost leadership is more common among followers.

  9. Market entry decisions: effects of absolute and relative confidence.

    Science.gov (United States)

    Bolger, Fergus; Pulford, Briony D; Colman, Andrew M

    2008-01-01

    In a market entry game, the number of entrants usually approaches game-theoretic equilibrium quickly, but in real-world markets business start-ups typically exceed market capacity, resulting in chronically high failure rates and suboptimal industry profits. Excessive entry has been attributed to overconfidence arising when expected payoffs depend partly on skill. In an experimental test of this hypothesis, 96 participants played 24 rounds of a market entry game, with expected payoffs dependent partly on skill on half the rounds, after their confidence was manipulated and measured. The results provide direct support for the hypothesis that high levels of confidence are largely responsible for excessive entry, and they suggest that absolute confidence, independent of interpersonal comparison, rather than confidence about one's abilities relative to others, drives excessive entry decisions when skill is involved.

  10. 9 CFR 381.208 - Poultry products offered for entry and entered to be handled and transported as domestic; entry...

    Science.gov (United States)

    2010-01-01

    ... 9 Animals and Animal Products 2 2010-01-01 2010-01-01 false Poultry products offered for entry and entered to be handled and transported as domestic; entry into official establishments; transportation. 381.208 Section 381.208 Animals and Animal Products FOOD SAFETY AND INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE AGENCY ORGANIZATION AND...

  11. BLOCKS List - DB-SPIRE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available his entry blocks3dSeqChainFamilySize Number of PDB chains whose SEQRES matches this entry blocks3dAtomIdFami...lySize Number of PDB entries whose ATOM matches this entry blocks3dAtomChainFamilySize Number of PDB chains

  12. Firm entry and aggregate efficiency growth: An optimal dynamic - Program of entry and R&D investment

    Directory of Open Access Journals (Sweden)

    Asma Raies

    2013-12-01

    Full Text Available The effect of entry on the aggregate efficiency growth is still theoretically and empirically unresolved. Many studies focused on this effect in short and long-run, without considering the dynamic transition and how do entry affect the convergence of the industrytoward its long-run equilibrium? This paper aims to provide an answer and to fill this gap by employingoptimal control principles. Our model exhibits saddlepath stability and shows that the effect of entry and entry liberalizing policy (reducing the entry cost on the aggregate efficiency growth may be positive, negative or nil depending on the industry’s initial characteristics (size and R&D. This theoretical result can justify the inconclusive current empirical evidence.

  13. Swiss Army Pathogen: The Salmonella Entry Toolkit

    Directory of Open Access Journals (Sweden)

    Peter J. Hume

    2017-08-01

    Full Text Available Salmonella causes disease in humans and animals ranging from mild self-limiting gastroenteritis to potentially life-threatening typhoid fever. Salmonellosis remains a considerable cause of morbidity and mortality globally, and hence imposes a huge socio-economic burden worldwide. A key property of all pathogenic Salmonella strains is the ability to invade non-phagocytic host cells. The major determinant of this invasiveness is a Type 3 Secretion System (T3SS, a molecular syringe that injects virulence effector proteins directly into target host cells. These effectors cooperatively manipulate multiple host cell signaling pathways to drive pathogen internalization. Salmonella does not only rely on these injected effectors, but also uses several other T3SS-independent mechanisms to gain entry into host cells. This review summarizes our current understanding of the methods used by Salmonella for cell invasion, with a focus on the host signaling networks that must be coordinately exploited for the pathogen to achieve its goal.

  14. On Heatshield Shapes for Mars Entry Capsules

    Science.gov (United States)

    Prabhu, DInesh K.; Saunders, David A.

    2012-01-01

    The 70deg sphere-cone - the standard geometry for all US Mars entry missions - is thoroughly examined via flow field simulations at a select few peak heating points along candidate flight trajectories. Emphasis is placed on turbulent heating based on the Baldwin- Lomax turbulence model. It is shown that increased leeward turbulent heating for a 70 sphere-cone flying at angle of attack is primarily due to the discontinuity in curvature between the spherical nose cap and the conical frustum - the attachment of the sonic line at this sphere-cone junction leads to a supersonic edge Mach number over the leeward acreage. In an attempt to mitigate this problem of elevated turbulent heating, alternate geometries, without any curvature discontinuities in the acreage, are developed. Two approaches, one based on nonlinear optimization with constraints, and one based on the use of non-uniform rational B-splines, are considered. All configurations examined remain axisymmetric. The aerothermal performance of alternate geometries is shown to be superior to that of the 70 sphere-cone.

  15. Inflatable Emergency Atmospheric-Entry Vehicles

    Science.gov (United States)

    Jones, Jack; Hall, Jeffrey; Wu, Jiunn Jeng

    2004-01-01

    In response to the loss of seven astronauts in the Space Shuttle Columbia disaster, large, lightweight, inflatable atmospheric- entry vehicles have been proposed as means of emergency descent and landing for persons who must abandon a spacecraft that is about to reenter the atmosphere and has been determined to be unable to land safely. Such a vehicle would act as an atmospheric decelerator at supersonic speed in the upper atmosphere, and a smaller, central astronaut pod could then separate at lower altitudes and parachute separately to Earth. Astronaut-rescue systems that have been considered previously have been massive, and the cost of designing them has exceeded the cost of fabrication of a space shuttle. In contrast, an inflatable emergency-landing vehicle according to the proposal would have a mass between 100 and 200 kg, could be stored in a volume of approximately 0.2 to 0.4 cu m, and could likely be designed and built much less expensively. When fully inflated, the escape vehicle behaves as a large balloon parachute, or ballute. Due to very low mass-per-surface area, a large radius, and a large coefficient of drag, ballutes decelerate at much higher altitudes and with much lower heating rates than the space shuttle. Although the space shuttle atmospheric reentry results in surface temperatures of about 1,600 C, ballutes can be designed for maximum temperatures below 600 C. This allows ballutes to be fabricated with lightweight ZYLON(Registered TradeMark) or polybenzoxazole (PBO), or equivalent.

  16. Intracellular route of canine parvovirus entry.

    Science.gov (United States)

    Vihinen-Ranta, M; Kalela, A; Mäkinen, P; Kakkola, L; Marjomäki, V; Vuento, M

    1998-01-01

    The present study was designed to investigate the endocytic pathway involved in canine parvovirus (CPV) infection. Reduced temperature (18 degrees C) or the microtubule-depolymerizing drug nocodazole was found to inhibit productive infection of canine A72 cells by CPV and caused CPV to be retained in cytoplasmic vesicles as indicated by immunofluorescence microscopy. Consistent with previously published results, these data indicate that CPV enters a host cell via an endocytic route and further suggest that microtubule-dependent delivery of CPV to late endosomes is required for productive infection. Cytoplasmic microinjection of CPV particles was used to circumvent the endocytosis and membrane fusion steps in the entry process. Microinjection experiments showed that CPV particles which were injected directly into the cytoplasm, thus avoiding the endocytic pathway, were unable to initiate progeny virus production. CPV treated at pH 5.0 prior to microinjection was unable to initiate virus production, showing that factors of the endocytic route other than low pH are necessary for the initiation of infection by CPV.

  17. HTCC: Broad Range Inhibitor of Coronavirus Entry.

    Directory of Open Access Journals (Sweden)

    Aleksandra Milewska

    Full Text Available To date, six human coronaviruses have been known, all of which are associated with respiratory infections in humans. With the exception of the highly pathogenic SARS and MERS coronaviruses, human coronaviruses (HCoV-NL63, HCoV-OC43, HCoV-229E, and HCoV-HKU1 circulate worldwide and typically cause the common cold. In most cases, infection with these viruses does not lead to severe disease, although acute infections in infants, the elderly, and immunocompromised patients may progress to severe disease requiring hospitalization. Importantly, no drugs against human coronaviruses exist, and only supportive therapy is available. Previously, we proposed the cationically modified chitosan, N-(2-hydroxypropyl-3-trimethylammonium chitosan chloride (HTCC, and its hydrophobically-modified derivative (HM-HTCC as potent inhibitors of the coronavirus HCoV-NL63. Here, we show that HTCC inhibits interaction of a virus with its receptor and thus blocks the entry. Further, we demonstrate that HTCC polymers with different degrees of substitution act as effective inhibitors of all low-pathogenic human coronaviruses.

  18. Lysosomotropic agents as HCV entry inhibitors

    Directory of Open Access Journals (Sweden)

    Nawaz Zafar

    2011-04-01

    Full Text Available Abstract HCV has two envelop proteins named as E1 and E2 which play an important role in cell entry through two main pathways: direct fusion at the plasma membrane and receptor-mediated endocytosis. Fusion of the HCV envelope proteins is triggered by low pH within the endosome. Lysosomotropic agents (LA such as Chloroquine and Ammonium chloride (NH4Cl are the weak bases and penetrate in lysosome as protonated form and increase the intracellular pH. To investigate the antiviral effect of LA (Chloroquine and NH4Cl on pH dependent endocytosis, HCV pseudoparticles (HCVpp of 1a and 3a genotype were produced and used to infect liver cells. The toxicological effects of Chloroquine and NH4Cl were tested in liver cells through MTT cell proliferation assay. For antiviral screening of Chloroquine and NH4Cl, liver cells were infected with HCVpp of 3a and 1a genotype in the presence or absence of different concentrations of Chloroquine and NH4Cl and there luciferase activity was determined by using a luminometer. The results demonstrated that Chloroquine and NH4Cl showed more than 50% reduction of virus infectivity at 50 μM and 10 mM concentrations respectively. These results suggest that inhibition of HCV at fusion step by increasing the lysosomal pH will be better option to treat chronic HCV.

  19. Three-dimensional acceleration planning for atmospheric entry

    Science.gov (United States)

    Chen, David Teh-Han

    The next generation of reusable launch vehicles will benefit from an improved entry guidance algorithm. Improvements have been made to the current Space Shuttle entry guidance algorithm that will provide an ability to handle aborts, reach large crossranges, and provide complete onboard planning capability. Building on the entry guidance algorithm for the Space Shuttle, three versions of a three-dimensional acceleration based entry guidance algorithm have been created and tested. The Space Shuttle entry guidance algorithm is extended to three dimensions by planning the drag profile and the occurrence of bank reversals. The three versions of the planning algorithm that have been developed are a single bank reversal planner, a two bank reversal planner, and a single bank reversal update planner. Tests of the single and two bank reversal versions show that the planning algorithms are capable of producing feasible trajectories for a wide range of various entry conditions. Integration and testing of the update planning algorithm with a feedback linearizing control law in a high fidelity simulation developed by NASA Marshall has demonstrated the algorithm's ability to handle a variety of entry conditions in an onboard environment.

  20. A Further Look at X-33 Entry Guidance and Beyond

    Science.gov (United States)

    Lu, Ping

    1999-01-01

    An entry guidance design developed at Iowa State University (ISU) for the X-33 advanced technology demonstrator is outlined and compared with the X-33 entry guidance algorithms developed at NASA Marshall. Both designs are based on the Space Shuttle entry guidance concept, but significant improvements have been made to enhance the performance and reduce the complexity. The ISU design was incorporated into MAVERIC, a high fidelity vehicle simulation software for the X-33, and evaluated in Monte Carlo simulations against random dispersions in propulsion system, wind and atmospheric properties, aerodynamic coefficients, interaction between propulsion and aerodynamics, and navigation data. The simulations clearly demonstrated the capability and precision of the ISU entry guidance design in successfully guiding the X-33 in some rather difficult flight scenarios. As the entry guidance development for the X-33 is completing, this report also offers some review of the strength and limitations of the current Shuttle-based entry guidance framework, and finally some potential candidates for next generation of more capable and cost-effective entry guidance designs are discussed.

  1. The effects of foreign banks entry in emerging market economies

    Directory of Open Access Journals (Sweden)

    MSc. Florida Veljanoska

    2011-12-01

    Full Text Available This paper investigates the effects of foreign bank entry in emerging markets. We developed a picture of a multinational bank in an emerging markets by combining statistics from several sources, in order to explore broad range of effects that brings foreign bank entry in the developing countries. Some impacts of foreign bank entry have been thoroughly studied, while others are hardly mention. Entry of foreign bank brings large benefits to host country’s financial system and economies at large. This paper is studying those benefits very carefully, by analyzing the impact of foreign bank entry on economy, government, monetary policy, large enterprises, small and medium size enterprises, domestic bank etc. But, we also consider the fact that at the same time, foreign investment in the financial sector, rises some concerns, and therefore we analyze the negative effects as well. At the end we must admit that although there are some negative consequences from foreign bank entry in emerging markets, the benefits that arise from foreign banks penetration are much more, and this trend of foreign bank entry has brought new positive economic impulse in developing world.

  2. PE_PGRS33 Contributes to Mycobacterium tuberculosis Entry in Macrophages through Interaction with TLR2.

    Directory of Open Access Journals (Sweden)

    Ivana Palucci

    Full Text Available PE_PGRS represent a large family of proteins typical of pathogenic mycobacteria whose members are characterized by an N-terminal PE domain followed by a large Gly-Ala repeat-rich C-terminal domain. Despite the abundance of PE_PGRS-coding genes in the Mycobacterium tuberculosis (Mtb genome their role and function in the biology and pathogenesis still remains elusive. In this study, we generated and characterized an Mtb H37Rv mutant (MtbΔ33 in which the structural gene of PE_PGRS33, a prototypical member of the protein family, was inactivated. We showed that this mutant entered macrophages with an efficiency up to ten times lower than parental or complemented strains, while its efficiency in infecting pneumocytes remained unaffected. Interestingly, the lack of PE_PGRS33 did not affect the intracellular growth of this mutant in macrophages. Using a series of functional deletion mutants of the PE_PGRS33 gene to complement the MtbΔ33 strain, we demonstrated that the PGRS domain is required to mediate cell entry into macrophages, with the key domain encompassing position 140-260 amino acids of PE_PGRS33. PE_PGRS33-mediated entry into macrophages was abolished in TLR2-deficient mice, as well as following treatment with wortmannin or an antibody against the complement receptor 3 (CR3, indicating that PE_PGRS33-mediated entry of Mtb in macrophages occurs through interaction with TLR2.

  3. PE_PGRS33 Contributes to Mycobacterium tuberculosis Entry in Macrophages through Interaction with TLR2.

    Science.gov (United States)

    Palucci, Ivana; Camassa, Serena; Cascioferro, Alessandro; Sali, Michela; Anoosheh, Saber; Zumbo, Antonella; Minerva, Mariachiara; Iantomasi, Raffaella; De Maio, Flavio; Di Sante, Gabriele; Ria, Francesco; Sanguinetti, Maurizio; Palù, Giorgio; Brennan, Michael J; Manganelli, Riccardo; Delogu, Giovanni

    2016-01-01

    PE_PGRS represent a large family of proteins typical of pathogenic mycobacteria whose members are characterized by an N-terminal PE domain followed by a large Gly-Ala repeat-rich C-terminal domain. Despite the abundance of PE_PGRS-coding genes in the Mycobacterium tuberculosis (Mtb) genome their role and function in the biology and pathogenesis still remains elusive. In this study, we generated and characterized an Mtb H37Rv mutant (MtbΔ33) in which the structural gene of PE_PGRS33, a prototypical member of the protein family, was inactivated. We showed that this mutant entered macrophages with an efficiency up to ten times lower than parental or complemented strains, while its efficiency in infecting pneumocytes remained unaffected. Interestingly, the lack of PE_PGRS33 did not affect the intracellular growth of this mutant in macrophages. Using a series of functional deletion mutants of the PE_PGRS33 gene to complement the MtbΔ33 strain, we demonstrated that the PGRS domain is required to mediate cell entry into macrophages, with the key domain encompassing position 140-260 amino acids of PE_PGRS33. PE_PGRS33-mediated entry into macrophages was abolished in TLR2-deficient mice, as well as following treatment with wortmannin or an antibody against the complement receptor 3 (CR3), indicating that PE_PGRS33-mediated entry of Mtb in macrophages occurs through interaction with TLR2.

  4. Phosphate-Activated Cyclin-Dependent Kinase Stabilizes G1 Cyclin To Trigger Cell Cycle Entry

    Science.gov (United States)

    Menoyo, S.; Ricco, N.; Bru, S.; Hernández-Ortega, S.; Escoté, X.; Aldea, M.

    2013-01-01

    G1 cyclins, in association with a cyclin-dependent kinase (CDK), are universal activators of the transcriptional G1-S machinery during entry into the cell cycle. Regulation of cyclin degradation is crucial for coordinating progression through the cell cycle, but the mechanisms that modulate cyclin stability to control cell cycle entry are still unknown. Here, we show that a lack of phosphate downregulates Cln3 cyclin and leads to G1 arrest in Saccharomyces cerevisiae. The stability of Cln3 protein is diminished in strains with low activity of Pho85, a phosphate-sensing CDK. Cln3 is an in vitro substrate of Pho85, and both proteins interact in vivo. More interestingly, cells that carry a CLN3 allele encoding aspartic acid substitutions at the sites of Pho85 phosphorylation maintain high levels of Cln3 independently of Pho85 activity. Moreover, these cells do not properly arrest in G1 in the absence of phosphate and they die prematurely. Finally, the activity of Pho85 is essential for accumulating Cln3 and for reentering the cell cycle after phosphate refeeding. Taken together, our data indicate that Cln3 is a molecular target of the Pho85 kinase that is required to modulate cell cycle entry in response to environmental changes in nutrient availability. PMID:23339867

  5. Cell-type specific requirements for thiol/disulfide exchange during HIV-1 entry and infection.

    Science.gov (United States)

    Stantchev, Tzanko S; Paciga, Mark; Lankford, Carla R; Schwartzkopff, Franziska; Broder, Christopher C; Clouse, Kathleen A

    2012-12-03

    The role of disulfide bond remodeling in HIV-1 infection is well described, but the process still remains incompletely characterized. At present, the data have been predominantly obtained using established cell lines and/or CXCR4-tropic laboratory-adapted virus strains. There is also ambiguity about which disulfide isomerases/reductases play a major role in HIV-1 entry, as protein disulfide isomerase (PDI) and/or thioredoxin (Trx) have emerged as the two enzymes most often implicated in this process. We have extended our previous findings and those of others by focusing on CCR5-using HIV-1 strains and their natural targets--primary human macrophages and CD4+ T lymphocytes. We found that the nonspecific thiol/disulfide exchange inhibitor, 5,5'-dithiobis(2-nitrobenzoic acid) (DTNB), significantly reduced HIV-1 entry and infection in cell lines, human monocyte-derived macrophages (MDM), and also phytohemagglutinin (PHA)-stimulated peripheral blood mononuclear cells (PBMC). Subsequent studies were performed using specific anti-PDI or Trx monoclonal antibodies (mAb) in HIV-1 envelope pseudotyped and wild type (wt) virus infection systems. Although human donor-to-donor variability was observed as expected, Trx appeared to play a greater role than PDI in HIV-1 infection of MDM. In contrast, PDI, but not Trx, was predominantly involved in HIV-1 entry and infection of the CD4+/CCR5+ T cell line, PM-1, and PHA-stimulated primary human T lymphocytes. Intriguingly, both PDI and Trx were present on the surface of MDM, PM-1 and PHA-stimulated CD4+ T cells. However, considerably lower levels of Trx were detected on freshly isolated CD4+ lymphocytes, compared to PHA-stimulated cells. Our findings clearly demonstrate the role of thiol/disulfide exchange in HIV-1 entry in primary T lymphocytes and MDM. They also establish a cell-type specificity regarding the involvement of particular disulfide isomerases/reductases in this process and may provide an explanation for differences

  6. Cell-type specific requirements for thiol/disulfide exchange during HIV-1 entry and infection

    Directory of Open Access Journals (Sweden)

    Stantchev Tzanko S

    2012-12-01

    Full Text Available Abstract Background The role of disulfide bond remodeling in HIV-1 infection is well described, but the process still remains incompletely characterized. At present, the data have been predominantly obtained using established cell lines and/or CXCR4-tropic laboratory-adapted virus strains. There is also ambiguity about which disulfide isomerases/ reductases play a major role in HIV-1 entry, as protein disulfide isomerase (PDI and/or thioredoxin (Trx have emerged as the two enzymes most often implicated in this process. Results We have extended our previous findings and those of others by focusing on CCR5-using HIV-1 strains and their natural targets - primary human macrophages and CD4+ T lymphocytes. We found that the nonspecific thiol/disulfide exchange inhibitor, 5,5'-dithiobis(2-nitrobenzoic acid (DTNB, significantly reduced HIV-1 entry and infection in cell lines, human monocyte-derived macrophages (MDM, and also phytohemagglutinin (PHA-stimulated peripheral blood mononuclear cells (PBMC. Subsequent studies were performed using specific anti-PDI or Trx monoclonal antibodies (mAb in HIV-1 envelope pseudotyped and wild type (wt virus infection systems. Although human donor-to-donor variability was observed as expected, Trx appeared to play a greater role than PDI in HIV-1 infection of MDM. In contrast, PDI, but not Trx, was predominantly involved in HIV-1 entry and infection of the CD4+/CCR5+ T cell line, PM-1, and PHA-stimulated primary human T lymphocytes. Intriguingly, both PDI and Trx were present on the surface of MDM, PM-1 and PHA-stimulated CD4+ T cells. However, considerably lower levels of Trx were detected on freshly isolated CD4+ lymphocytes, compared to PHA-stimulated cells. Conclusions Our findings clearly demonstrate the role of thiol/disulfide exchange in HIV-1 entry in primary T lymphocytes and MDM. They also establish a cell-type specificity regarding the involvement of particular disulfide isomerases/reductases in this

  7. Fuel cells selected entries from the encyclopedia of sustainability science and technology

    CERN Document Server

    Kreuer, Klaus-Dieter

    2012-01-01

    The expected end of the "oil age" will lead to increasing focus and reliance on alternative energy conversion devices, among which fuel cells have the potential to play an important role.  Not only can phosphoric acid and solid oxide fuel cells already efficiently convert today's fossil fuels, including methane, into electricity, but other types of fuel cells, such as polymer electrolyte membrane fuel cells, have the potential to become the cornerstones of a possible future hydrogen economy. Featuring 21 peer-reviewed entries from the Encyclopedia of Sustainability Science and Technology, Fuel

  8. Analysis of limited-entry well tests in layered reservoirs

    Energy Technology Data Exchange (ETDEWEB)

    Hayes, M.R.; Naismith, J.D.A.; Gunasekera, D.L.; Fitzpatrick, A.J.

    1994-12-31

    Vertical permeability, often a key parameter in reservoir engineering, can be calculated from the analysis of a limited entry pressure transient. Analytical solutions for limited entry welltests, where a fraction of the reservoir interval is perforated, have been available in the literature for some time. This paper considers the evaluation of limited entry welltests in heterogeneous layered formations. A number of field examples have been analyzed using both conventional analytical techniques and a new general purpose numerical welltest analysis application. The examples show that in layered formations vertical permeability can be significantly under estimated by conventional analytical analysis.

  9. Predicting academic outcomes in an Australian graduate entry medical programme.

    Science.gov (United States)

    Puddey, Ian B; Mercer, Annette

    2014-02-15

    Predictive validity studies for selection criteria into graduate entry courses in Australia have been inconsistent in their outcomes. One of the reasons for this inconsistency may have been failure to have adequately considered background disciplines of the graduates as well as other potential confounding socio-demographic variables that may influence academic performance. Graduate entrants into the MBBS at The University of Western Australia between 2005 and 2012 were studied (N = 421). They undertook a 6-month bridging course, before joining the undergraduate-entry students for Years 3 through 6 of the medical course. Students were selected using their undergraduate Grade Point Average (GPA), Graduate Australian Medical School Admissions Test scores (GAMSAT) and a score from a standardised interview. Students could apply from any background discipline and could also be selected through an alternative rural entry pathway again utilising these 3 entry scores. Entry scores, together with age, gender, discipline background, rural entry status and a socioeconomic indicator were entered into linear regression models to determine the relative influence of each predictor on subsequent academic performance in the course. Background discipline, age, gender and selection through the rural pathway were variously related to each of the 3 entry criteria. Their subsequent inclusion in linear regression models identified GPA at entry, being from a health/allied health background and total GAMSAT score as consistent independent predictors of stronger academic performance as measured by the weighted average mark for the core units completed throughout the course. The Interview score only weakly predicted performance later in the course and mainly in clinically-based units. The association of total GAMSAT score with academic performance was predominantly dictated by the score in GAMSAT Section 3 (Reasoning in the biological and physical sciences) with Section 1 (Reasoning in the

  10. Fluctuations of Matrix Entries of Regular Functions of Wigner Matrices

    CERN Document Server

    Pizzo, Alessandro; Soshnikov, Alexander

    2011-01-01

    We study the fluctuations of the matrix entries of regular functions of Wigner random matrices in the limit when the matrix size goes to infinity. In the case of the Gaussian ensembles (GOE and GUE) this problem was considered by A.Lytova and L.Pastur in J. Stat. Phys., v.134, 147-159 (2009). Our results are valid provided the off-diagonal matrix entries have finite fourth moment, the diagonal matrix entries have finite third moment, and the test functions have four continuous derivatives in a neighborhood of the support of the Wigner semicircle law.

  11. Japanese subsidiaries in the European Union: Entry modes and performance

    Directory of Open Access Journals (Sweden)

    David Tanganelli

    2014-12-01

    Full Text Available Japanese Foreign Direct Investment (FDI in the European Union and its performance were analysed in this work. Three different FDI or entry modes used by Japanese companies to enter the European market were compared, and the presence of a relationship between the selected entry mode and the performance of the subsidiary was investigated. We found that more than half of the Japanese investments in Europe took the form of new ventures, approximately 40% were joint ventures and less than 6% were acquisitions. We found that no specific entry mode performed better than another.

  12. Convective and radiative heating of a Saturn entry probe

    Science.gov (United States)

    Tiwari, S. N.; Szema, K. Y.; Moss, J. N.; Subramanian, S. V.

    1984-01-01

    The extent of convective and radiative heating for a Saturn entry probe is investigated in the absence and presence of ablation mass injection. The flow in the shock layer is assumed to be axisymmetric, viscous and in local thermodynamic equilibrium. The importance of chemical nonequilibrium effects for both the radiative and convective nonblowing surface heating rates is demonstrated for prescribed entry conditions. Results indicate that the nonequilibrium chemistry can significantly influence the rate of radiative heating to the entry probes. With coupled carbon-phenolic ablation injection, the convective heating rates are reduced substantially. Turbulence has little effect on radiative heating but it increases the convective heating considerably.

  13. Comparable stocks, boundedly rational stock markets and IPO entry rates.

    Directory of Open Access Journals (Sweden)

    Jay Chok

    Full Text Available In this study, we examine how initial public offerings (IPO entry rates are affected when stock markets are boundedly rational and IPO firms infer information from their counterparts in the market. We hypothesize a curvilinear relationship between the number of comparable stocks and initial public offerings (IPO entry rates into the NASDAQ Stock Exchange. Furthermore, we argue that trading volume and changes in stock returns partially mediates the relationship between the number of comparable stocks and IPO entry rates. The statistical evidence provides strong support for the hypotheses.

  14. Physics-Based Modeling of Meteor Entry and Breakup

    Science.gov (United States)

    Prabhu, Dinesh K.; Agrawal, Parul; Allen, Gary A., Jr.; Bauschlicher, Charles W., Jr.; Brandis, Aaron M.; Chen, Yih-Kang; Jaffe, Richard L.; Palmer, Grant E.; Saunders, David A.; Stern, Eric C.; Tauber, Michael E.; Venkatapathy, Ethiraj

    2015-01-01

    A new research effort at NASA Ames Research Center has been initiated in Planetary Defense, which integrates the disciplines of planetary science, atmospheric entry physics, and physics-based risk assessment. This paper describes work within the new program and is focused on meteor entry and breakup.Over the last six decades significant effort was expended in the US and in Europe to understand meteor entry including ablation, fragmentation and airburst (if any) for various types of meteors ranging from stony to iron spectral types. These efforts have produced primarily empirical mathematical models based on observations. Weaknesses of these models, apart from their empiricism, are reliance on idealized shapes (spheres, cylinders, etc.) and simplified models for thermal response of meteoritic materials to aerodynamic and radiative heating. Furthermore, the fragmentation and energy release of meteors (airburst) is poorly understood.On the other hand, flight of human-made atmospheric entry capsules is well understood. The capsules and their requisite heatshields are designed and margined to survive entry. However, the highest speed Earth entry for capsules is 13 kms (Stardust). Furthermore, Earth entry capsules have never exceeded diameters of 5 m, nor have their peak aerothermal environments exceeded 0.3 atm and 1 kW/sq cm. The aims of the current work are: (i) to define the aerothermal environments for objects with entry velocities from 13 to 20 kms; (ii) to explore various hypotheses of fragmentation and airburst of stony meteors in the near term; (iii) to explore the possibility of performing relevant ground-based tests to verify candidate hypotheses; and (iv) to quantify the energy released in airbursts. The results of the new simulations will be used to anchor said risk assessment analyses. With these aims in mind, state-of-the-art entry capsule design tools are being extended for meteor entries. We describe: (i) applications of current simulation tools to

  15. Modulation of Calcium Entry by Mitochondria.

    Science.gov (United States)

    Fonteriz, Rosalba; Matesanz-Isabel, Jessica; Arias-Del-Val, Jessica; Alvarez-Illera, Pilar; Montero, Mayte; Alvarez, Javier

    2016-01-01

    The role of mitochondria in intracellular Ca(2+) signaling relies mainly in its capacity to take up Ca(2+) from the cytosol and thus modulate the cytosolic [Ca(2+)]. Because of the low Ca(2+)-affinity of the mitochondrial Ca(2+)-uptake system, this organelle appears specially adapted to take up Ca(2+) from local high-Ca(2+) microdomains and not from the bulk cytosol. Mitochondria would then act as local Ca(2+) buffers in cellular regions where high-Ca(2+) microdomains form, that is, mainly close to the cytosolic mouth of Ca(2+) channels, both in the plasma membrane and in the endoplasmic reticulum (ER). One of the first targets proposed already in the 1990s to be regulated in this way by mitochondria were the store-operated Ca(2+) channels (SOCE). Mitochondria, by taking up Ca(2+) from the region around the cytosolic mouth of the SOCE channels, would prevent its slow Ca(2+)-dependent inactivation, thus keeping them active for longer. Since then, evidence for this mechanism has accumulated mainly in immunitary cells, where mitochondria actually move towards the immune synapse during T cell activation. However, in many other cell types the available data indicate that the close apposition between plasma and ER membranes occurring during SOCE activation precludes mitochondria from getting close to the Ca(2+)-entry sites. Alternative pathways for mitochondrial modulation of SOCE, both Ca(2+)-dependent and Ca(2+)-independent, have also been proposed, but further work will be required to elucidate the actual mechanisms at work. Hopefully, the recent knowledge of the molecular nature of the mitochondrial Ca(2+) uniporter will allow soon more precise studies on this matter.

  16. Role of recycling endosomes and lysosomes in dynein-dependent entry of canine parvovirus.

    Science.gov (United States)

    Suikkanen, Sanna; Sääjärvi, Katja; Hirsimäki, Jonna; Välilehto, Outi; Reunanen, Hilkka; Vihinen-Ranta, Maija; Vuento, Matti

    2002-05-01

    Canine parvovirus (CPV) is a nonenveloped virus with a 5-kb single-stranded DNA genome. Lysosomotropic agents and low temperature are known to prevent CPV infection, indicating that the virus enters its host cells by endocytosis and requires an acidic intracellular compartment for penetration into the cytoplasm. After escape from the endocytotic vesicles, CPV is transported to the nucleus for replication. In the present study the intracellular entry pathway of the canine parvovirus in NLFK (Nordisk Laboratory feline kidney) cells was studied. After clustering in clathrin-coated pits and being taken up in coated vesicles, CPV colocalized with coendocytosed transferrin in endosomes resembling recycling endosomes. Later, CPV was found to enter, via late endosomes, a perinuclear vesicular compartment, where it colocalized with lysosomal markers. There was no indication of CPV entry into the trans-Golgi or the endoplasmic reticulum. Similar results were obtained both with full and with empty capsids. The data thus suggest that CPV or its DNA was released from the lysosomal compartment to the cytoplasm to be then transported to the nucleus. Electron microscopy analysis revealed endosomal vesicles containing CPV to be associated with microtubules. In the presence of nocodazole, a microtubule-disrupting drug, CPV entry was blocked and the virus was found in peripheral vesicles. Thus, some step(s) of the entry process were dependent on microtubules. Microinjection of antibodies to dynein caused CPV to remain in pericellular vesicles. This suggests an important role for the motor protein dynein in transporting vesicles containing CPV along the microtubule network.

  17. Vocabulary of acid precipitation and air pollution. Terminology bulletin 175. Vocabulaire des precipitations acides et de la pollution atmospherique. Bulletin de terminologie 175

    Energy Technology Data Exchange (ETDEWEB)

    Rivard, D.

    1988-01-01

    This English-French vocabulary includes about 600 concepts on acid rain as well as general air pollution terminology. A large number of official names and their abbreviations have also been incorporated into the dictionary. The vocabulary is arranged alphabeticaly into a series of terminology files, each of which begins with a main entry in English and French. The main entry represents those terms selected as being of superior terminological quality. The main entry may be followed by sub-entries, which are synonyms, and may also be followed by a definition, an example of usage, a defining context, or a terminological observation. Sub-entries are in the same alphabetical sequence as the main entries, and refer the reader to the main entry. An index of French terms is also included. 243 refs.

  18. Structural and catalytic effects of an invariant purine substitution in the hammerhead ribozyme: implications for the mechanism of acid-base catalysis.

    Science.gov (United States)

    Schultz, Eric P; Vasquez, Ernesto E; Scott, William G

    2014-09-01

    The hammerhead ribozyme catalyzes RNA cleavage via acid-base catalysis. Whether it does so by general acid-base catalysis, in which the RNA itself donates and abstracts protons in the transition state, as is typically assumed, or by specific acid-base catalysis, in which the RNA plays a structural role and proton transfer is mediated by active-site water molecules, is unknown. Previous biochemical and crystallographic experiments implicate an invariant purine in the active site, G12, as the general base. However, G12 may play a structural role consistent with specific base catalysis. To better understand the role of G12 in the mechanism of hammerhead catalysis, a 2.2 Å resolution crystal structure of a hammerhead ribozyme from Schistosoma mansoni with a purine substituted for G12 in the active site of the ribozyme was obtained. Comparison of this structure (PDB entry 3zd4), in which A12 is substituted for G, with three previously determined structures that now serve as important experimental controls, allows the identification of structural perturbations that are owing to the purine substitution itself. Kinetic measurements for G12 purine-substituted schistosomal hammerheads confirm a previously observed dependence of rate on the pK(a) of the substituted purine; in both cases inosine, which is similar to G in pK(a) and hydrogen-bonding properties, is unexpectedly inactive. Structural comparisons indicate that this may primarily be owing to the lack of the exocyclic 2-amino group in the G12A and G12I substitutions and its structural effect upon both the nucleotide base and phosphate of A9. The latter involves the perturbation of a previously identified and well characterized metal ion-binding site known to be catalytically important in both minimal and full-length hammerhead ribozyme sequences. The results permit it to be suggested that G12 plays an important role in stabilizing the active-site structure. This result, although not inconsistent with the potential

  19. Identification of Interactions in the E1E2 Heterodimer of Hepatitis C Virus Important for Cell Entry*

    Science.gov (United States)

    Maurin, Guillemette; Fresquet, Judith; Granio, Ophélia; Wychowski, Czeslaw; Cosset, François-Loïc; Lavillette, Dimitri

    2011-01-01

    Several conserved domains critical for E1E2 assembly and hepatitis C virus entry have been identified in E1 and E2 envelope glycoproteins. However, the role of less conserved domains involved in cross-talk between either glycoprotein must be defined to fully understand how E1E2 undergoes conformational changes during cell entry. To characterize such domains and to identify their functional partners, we analyzed a set of intergenotypic E1E2 heterodimers derived from E1 and E2 of different genotypes. The infectivity of virions indicated that Con1 E1 did not form functional heterodimers when associated with E2 from H77. Biochemical analyses demonstrated that the reduced infectivity was not related to alteration of conformation and incorporation of Con1 E1/H77 E2 heterodimers but rather to cell entry defects. Thus, we generated chimeric E1E2 glycoproteins by exchanging different domains of each protein in order to restore functional heterodimers. We found that both the ectodomain and transmembrane domain of E1 influenced infectivity. Site-directed mutagenesis highlighted the role of amino acids 359, 373, and 375 in transmembrane domain in entry. In addition, we identified one domain involved in entry within the N-terminal part of E1, and we isolated a motif at position 219 that is critical for H77 function. Interestingly, using additional chimeric E1E2 complexes harboring substitutions in this motif, we found that the transmembrane domain of E1 acts as a partner of this motif. Therefore, we characterized domains of E1 and E2 that have co-evolved inside a given genotype to optimize their interactions and allow efficient entry. PMID:21555519

  20. 19 CFR 122.26 - Entry and clearance.

    Science.gov (United States)

    2010-04-01

    ... AIR COMMERCE REGULATIONS Private Aircraft § 122.26 Entry and clearance. Private aircraft, as defined... information as set forth in § 122.22(c), and grants electronic clearance via electronic mail or telephone....

  1. 27 CFR 22.25 - Right of entry and examination.

    Science.gov (United States)

    2010-04-01

    ... BUREAU, DEPARTMENT OF THE TREASURY LIQUORS DISTRIBUTION AND USE OF TAX-FREE ALCOHOL Administrative Provisions Authorities § 22.25 Right of entry and examination. An appropriate TTB officer may enter,...

  2. Multidisciplinary Design Under Uncertainty for Entry Vehicles Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The physical difficulty of designing entry vehicles originates from the large degree of coupling between the various disciplines involved in the design. Every...

  3. Higher Entry Threshold of the Secondary Lead Industry

    Institute of Scientific and Technical Information of China (English)

    2012-01-01

    <正>According to news posted on the Ministry of Industry and Information Technology’s website on September 5,the MIIT and the Ministry of Environmental Protection recently jointly issued the Entry Conditions of the Secondary

  4. Orion Entry Performance-Based Center-of-Gravity Box

    Science.gov (United States)

    Rea, Jeremy R.

    2010-01-01

    The Orion capsule has many performance requirements for its atmospheric entry trajectory. Requirements on landing accuracy, maximum heating rate, total heat load, propellant usage, and sensed acceleration must all be satised. It is desired to define a methodology to translate the many performance requirements for an atmospheric entry trajectory into language easily understood by vehicle designers in terms of an allowable center-of-gravity box. This is possible by noting that most entry performance parameters for a capsule vehicle are mainly determined by the lift-to-drag ratio of the vehicle. However, the lift-to- drag ratio should be considered a probabilistic quantity rather than deterministic, where variations in the lift-to-drag are caused by both aerodynamic and center-of-gravity un- certainties. This paper discusses the technique used by the Orion program to define the allowable dispersions in center-of-gravity to achieve the desired entry performance while accounting for aerodynamic uncertainty.

  5. 33 CFR 151.08 - Denial of entry.

    Science.gov (United States)

    2010-07-01

    ... BALLAST WATER Implementation of MARPOL 73/78 and the Protocol on Environmental Protection to the Antarctic Treaty as it Pertains to Pollution from Ships General § 151.08 Denial of entry. (a) Unless a ship...

  6. The state-of-the-art port of entry workshop

    Energy Technology Data Exchange (ETDEWEB)

    Godfrey, B.

    1995-05-01

    The increased demand for freight movements through international ports of entry and the signing of the North American Free Trade Agreement (NAFTA) have increased freight traffic at border ports of entry. The State-of-the-Art Port of Entry Workshop initiated a dialogue among technologists and stakeholders to explore the potential uses of technology at border crossings and to set development priorities. International ports of entry are both information and labor intensive, and there are many promising technologies that could be used to provide timely information and optimize inspection resources. Participants universally held that integration of technologies and operations is critical to improving port services. A series of Next Steps was developed to address stakeholder issues and national priorities, such as the National Transportation Policy and National Drug Policy. This report documents the views of the various stakeholders and technologists present at the workshop and outlines future directions of study.

  7. Adapting Mars Entry, Descent and Landing System for Earth

    Science.gov (United States)

    Heilimo, J.; Harri, A.-M.; Aleksashkin, S.; Koryanov, V.; Guerrero, H.; Schmidt, W.; Haukka, H.; Finchenko, V.; Martynov, M.; Ostresko, B.; Ponomarenko, A.; Kazakovtsev, V.; Arruego, I.; Martin, S.; Siili, T.

    2013-09-01

    In 2001 - 2011 an inflatable Entry, Descent and Landing System (EDLS) for Martian atmosphere was developed by FMI and the MetNet team. This MetNet Mars Lander EDLS is used in both the initial deceleration during atmospheric entry and in the final deceleration before the semi-hard impact of the penetrator to Martian surface. The EDLS design is ingenious and its applicability to Earth's atmosphere is studied in the on-going project. In particular, the behavior of the system in the critical transonic aerodynamic (from hypersonic to subsonic) regime will be investigated. This project targets to analyze and test the transonic behavior of this compact and light weight payload entry system to Earth's atmosphere [1]. Scaling and adaptation for terrestrial atmospheric conditions, instead of a completely new design, is a favorable approach for providing a new re-entry vehicle for terrestrial space applications.

  8. Entry Vehicle Control System Design for the Mars Smart Lander

    Science.gov (United States)

    Calhoun, Philip C.; Queen, Eric M.

    2002-01-01

    The NASA Langley Research Center, in cooperation with the Jet Propulsion Laboratory, participated in a preliminary design study of the Entry, Descent and Landing phase for the Mars Smart Lander Project. This concept utilizes advances in Guidance, Navigation and Control technology to significantly reduce uncertainty in the vehicle landed location on the Mars surface. A candidate entry vehicle controller based on the Reaction Control System controller for the Apollo Lunar Excursion Module digital autopilot is proposed for use in the entry vehicle attitude control. A slight modification to the phase plane controller is used to reduce jet-firing chattering while maintaining good control response for the Martian entry probe application. The controller performance is demonstrated in a six-degree-of-freedom simulation with representative aerodynamics.

  9. Multidisciplinary Design Under Uncertainty for Entry Vehicles Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The physical difficulty of designing entry vehicles originates from the large degree of coupling between the various disciplines involved in the design. Every...

  10. Advanced Metal Rubber Sensors for Hypersonic Decelerator Entry Systems Project

    Data.gov (United States)

    National Aeronautics and Space Administration — NanoSonic proposes to design and develop light-weight, low-modulus, and durable Metal Rubber™ sensors for aeroelastic analysis of Hypersonic Decelerator Entry...

  11. Simulation of the ATV Re-Entry Obsrvations

    Science.gov (United States)

    Bastida Virgili, B.; Krag, H.; Lips, T.; De Pasquale, E.

    2010-09-01

    The first ATV was launched on 9th March 2008 and, after a successful mission, the last phase was a controlled destructive re-entry on 29th September 2008, shortly after 13:30 UTC, in which the remains of the ATV and its load fell into the South Pacific Ocean. In order to better understand the re-entry processes, an insitu optical observation campaign was launched to record and analyze the ATV controlled re-entry with several instruments on board of two airplanes and also from the ISS. This observation campaign was successful and triggered several different still-ongoing studies on the extraction and analysis of data to draw conclusions on the adequacy of the re-entry break-up and explosion models used for the safety analysis of the ATV re-entry. This paper addresses the validation process for ESA’s model for re-entry survivability and on-ground risk assessment for explosive re-entry events using the observation data. The underlying rationale is to improve the models for the benefit of planning and execution of future controlled re-entries and in risk calculation in case of uncontrolled ones. The re-entry trajectory of the ATV, the explosive event and the trajectories of the fragments are simulated with the existing ESA tools and the EVOLVE explosion model. Additional software has been developed to simulate airborne sensor field of view(FOV) crossings based on the aircraft trajectories, attitude profile, sensor mounts and FOVs. Sensor performance and object radiation are modeled in order to generate synthetic images for the different sensors in the ISS and the two airplanes. These synthetic images and synthetic videos are compared with the available reentry observations of the ATV. This paper will present the software and techniques to generate synthetic imagery. It will give results of the comparison between the simulated and the real trajectories and fragmentation and explain the subsequent validation process of the ESA re-entry tools and the potential

  12. Harnessing the Electrophilicity of Keteniminium Ions: A Simple and Straightforward Entry to Tetrahydropyridines and Piperidines from Ynamides

    Science.gov (United States)

    Lecomte, Morgan

    2016-01-01

    Abstract An efficient, modular and straightforward entry to tetrahydropyridines and piperidines is reported. This reaction is based on a formal intramolecular hydroalkylation of readily available, properly substituted ynamides which, upon simple activation under acidic conditions, generate highly reactive activated keteniminium ions whose reactivity can be finely controlled to induce a remarkably efficient [1,5]‐hydride shift from unactivated C−H bonds and trigger a cationic cyclization which is complete within minutes. PMID:26934474

  13. FDI In India : Determinents Of Entry Modes In India

    OpenAIRE

    Jain, Gaurav

    2003-01-01

    Although cultural distance between countries have gained a lot of attention in the FDI literature but impact on cultural distance on entry mode has recently been extensively researched, after Kogut and Singh introduced the simple measure to calculate cultural distance between the countries. This dissertation tests the proposition that do cultural distance, Sector, or Nationality affect the entry mode strategies of multinational firms when they enter foreign countries. I focus my study by conc...

  14. Lipoprotein Receptors Redundantly Participate in Entry of Hepatitis C Virus.

    Directory of Open Access Journals (Sweden)

    Satomi Yamamoto

    2016-05-01

    Full Text Available Scavenger receptor class B type 1 (SR-B1 and low-density lipoprotein receptor (LDLR are known to be involved in entry of hepatitis C virus (HCV, but their precise roles and their interplay are not fully understood. In this study, deficiency of both SR-B1 and LDLR in Huh7 cells was shown to impair the entry of HCV more strongly than deficiency of either SR-B1 or LDLR alone. In addition, exogenous expression of not only SR-B1 and LDLR but also very low-density lipoprotein receptor (VLDLR rescued HCV entry in the SR-B1 and LDLR double-knockout cells, suggesting that VLDLR has similar roles in HCV entry. VLDLR is a lipoprotein receptor, but the level of its hepatic expression was lower than those of SR-B1 and LDLR. Moreover, expression of mutant lipoprotein receptors incapable of binding to or uptake of lipid resulted in no or slight enhancement of HCV entry in the double-knockout cells, suggesting that binding and/or uptake activities of lipid by lipoprotein receptors are essential for HCV entry. In addition, rescue of infectivity in the double-knockout cells by the expression of the lipoprotein receptors was not observed following infection with pseudotype particles bearing HCV envelope proteins produced in non-hepatic cells, suggesting that lipoproteins associated with HCV particles participate in the entry through their interaction with lipoprotein receptors. Buoyant density gradient analysis revealed that HCV utilizes these lipoprotein receptors in a manner dependent on the lipoproteins associated with HCV particles. Collectively, these results suggest that lipoprotein receptors redundantly participate in the entry of HCV.

  15. Lipoprotein Receptors Redundantly Participate in Entry of Hepatitis C Virus.

    Science.gov (United States)

    Yamamoto, Satomi; Fukuhara, Takasuke; Ono, Chikako; Uemura, Kentaro; Kawachi, Yukako; Shiokawa, Mai; Mori, Hiroyuki; Wada, Masami; Shima, Ryoichi; Okamoto, Toru; Hiraga, Nobuhiko; Suzuki, Ryosuke; Chayama, Kazuaki; Wakita, Takaji; Matsuura, Yoshiharu

    2016-05-01

    Scavenger receptor class B type 1 (SR-B1) and low-density lipoprotein receptor (LDLR) are known to be involved in entry of hepatitis C virus (HCV), but their precise roles and their interplay are not fully understood. In this study, deficiency of both SR-B1 and LDLR in Huh7 cells was shown to impair the entry of HCV more strongly than deficiency of either SR-B1 or LDLR alone. In addition, exogenous expression of not only SR-B1 and LDLR but also very low-density lipoprotein receptor (VLDLR) rescued HCV entry in the SR-B1 and LDLR double-knockout cells, suggesting that VLDLR has similar roles in HCV entry. VLDLR is a lipoprotein receptor, but the level of its hepatic expression was lower than those of SR-B1 and LDLR. Moreover, expression of mutant lipoprotein receptors incapable of binding to or uptake of lipid resulted in no or slight enhancement of HCV entry in the double-knockout cells, suggesting that binding and/or uptake activities of lipid by lipoprotein receptors are essential for HCV entry. In addition, rescue of infectivity in the double-knockout cells by the expression of the lipoprotein receptors was not observed following infection with pseudotype particles bearing HCV envelope proteins produced in non-hepatic cells, suggesting that lipoproteins associated with HCV particles participate in the entry through their interaction with lipoprotein receptors. Buoyant density gradient analysis revealed that HCV utilizes these lipoprotein receptors in a manner dependent on the lipoproteins associated with HCV particles. Collectively, these results suggest that lipoprotein receptors redundantly participate in the entry of HCV.

  16. Fractionation and fragmentation of glass cosmic spherules during atmospheric entry

    Digital Repository Service at National Institute of Oceanography (India)

    Rudraswami, N.G.; ShyamPrasad, M.; Babu, E.V.S.S.K.; VijayaKumar, T.; Feng, W.; Plane, J.M.C.

    of these elements during atmospheric entry (Fig. 7). However, the bulk chemical compositions of Al, Ca, Mg, Fe are generally CI-like except for some volatile elements, which rules out an achondritic parent body. Taylor et al. (2007) reported anorthite with low... entry with the exception of the particles having high velocities and low zenith angles (Love and Brownlee, 1991; Vondrak et al., 2008). Larger micrometeorites have undergone ablation leading to siderophile and volatile element depletion, and mass...

  17. The choice of foreign entry modes in a control perspective

    DEFF Research Database (Denmark)

    Boyd, Britta; Dyhr Ulrich, Anna Marie; Hollensen, Svend

    The aim of this article is to investigate the choice of entry modes for international markets in a control perspective. A survey from The Confederation of Danish Industry with 234 Danish small- and medium sized enterprises served as a data base. The entry modes are categorized into three groups d...... turnover. The factors: personal networks and the interruption of the international activities were the most significant factors for the choice of intermediate mode (joint ventures and strategic alliances)....

  18. Principles of safe abdominal entry in laparoscopic gynecologic surgery

    Directory of Open Access Journals (Sweden)

    Jongrak Thepsuwan

    2013-11-01

    Full Text Available Laparoscopic gynecologic surgery has been widely used with a range of benefits. However, there are complications that are related to the abdominal entry process. Serious complications are gastrointestinal tract and major blood vessel injuries. This review introduces the recent available literature to prevent and eliminate the laparoscopic entry complications. The open entry technique is associated with a significant reduction of failed entry, compared to the closed entry technique; however there is no difference in the incidence of visceral or vascular injury. Laparoscopic entry by the left upper abdomen (i.e., Palmer's point or the middle upper abdomen (i.e., the Lee-Huang point could be considered in patients with suspected periumbilical adhesions or a history of umbilical hernia, or after three failed attempts of insufflation at the umbilicus. The Lee-Huang point has its own benefit for the operative laparoscopy in large pelvic pathologies and gynecology malignancy cases. The angle of Veress needle insertion varies from 45° in nonobese women to 90° in extraordinarily obese women. The high intra-peritoneal pressure entries, which range from 20 mmHg to 25 mmHg, minimize the risk of vascular injury. Therefore, this will not adversely affect the cardiopulmonary function in healthy women. The Veress intraperitoneal pressure (<10 mmHg is a reliable indicator of correct intraperitoneal placement of the Veress needle. The elevation of anterior abdominal wall for placement of a Veress needle increases the risks of failed entry and shows no advantage in regard to vascular or visceral complications. Surgeons should continue to increase their knowledge of anatomy, their training, and their experience to decrease laparoscopic complications.

  19. 19 CFR 147.44 - Entry for another fair.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Entry for another fair. 147.44 Section 147.44 Customs Duties U.S. CUSTOMS AND BORDER PROTECTION, DEPARTMENT OF HOMELAND SECURITY; DEPARTMENT OF THE TREASURY (CONTINUED) TRADE FAIRS Disposition of Articles Entered for Fairs § 147.44 Entry for another fair. Articles entered for a fair which are to...

  20. Entry ramps in the Nagel-Schreckenberg model

    DEFF Research Database (Denmark)

    Pedersen, Morten Monrad; Ruhoff, Peder Thusgaard

    2002-01-01

    This paper describes a way of including entry ramps in the Nagel-Schreckenberg traffic model. The idea is to place what are called shadow cars on a highway next to cars on entry ramps, which enables the drivers to take ramp cars into account. The model is shown to capture important real......-life traffic phenomena that have not been included in previous models. Furthermore, it is demonstrated that the desirable properties of the Nagel-Schreckenberg model are retained....

  1. Fragmentation of weak non-ablating objects during entry

    Energy Technology Data Exchange (ETDEWEB)

    Canavan, G.H.

    1997-04-01

    Fragmentation of objects during entry can be treated with developed models of breakup, fragment cascade, separation, and deceleration. The results reduce to those derived earlier for strong objects. Model predictions are in agreement with the key features of numerical simulations. Model equations can be inverted analytically to infer object size, entry speed, and strength from measurements of peak power and altitude and fragmentation altitude or time.

  2. Using analytic network process for evaluating mobile text entry methods.

    Science.gov (United States)

    Ocampo, Lanndon A; Seva, Rosemary R

    2016-01-01

    This paper highlights a preference evaluation methodology for text entry methods in a touch keyboard smartphone using analytic network process (ANP). Evaluation of text entry methods in literature mainly considers speed and accuracy. This study presents an alternative means for selecting text entry method that considers user preference. A case study was carried out with a group of experts who were asked to develop a selection decision model of five text entry methods. The decision problem is flexible enough to reflect interdependencies of decision elements that are necessary in describing real-life conditions. Results showed that QWERTY method is more preferred than other text entry methods while arrangement of keys is the most preferred criterion in characterizing a sound method. Sensitivity analysis using simulation of normally distributed random numbers under fairly large perturbation reported the foregoing results reliable enough to reflect robust judgment. The main contribution of this paper is the introduction of a multi-criteria decision approach in the preference evaluation of text entry methods.

  3. Effects ok ikea's entry into a furniture production cluster

    Directory of Open Access Journals (Sweden)

    Vasco Eiriz

    2016-04-01

    Full Text Available The entry of a multinational into a cluster, a geographic agglomeration in a given place or region of predominantly small and medium enterprises specialized in a given industry or related industries, impacts the incumbent in the cluster. Aiming to identify the main effects of a multinational entry on the firms’ strategy in a cluster, it was analyzed the entry of IKEA, a Swedish multinational, into the cluster of furniture production in Paços de Ferreira and Paredes, in Portugal. In this study, the data collection technique to access primary data was a survey. The sample has small enterprises, which is similar to the structure of firms in the studied cluster. Results show that more than half the sample thinks that the entry of the multinational had not affected them. However, the firms that acknowledge a significant impact, assess that impact as negative. The competitiveness factors that have improved more significantly after IKEA’s entry were new product development and exporting strategies. The main responses of incumbent firms to the multinational entry were internationalization and the development of generic strategies of differentiation and focus based on differentiation.

  4. Thermal Testing of Woven TPS Materials in Extreme Entry Environments

    Science.gov (United States)

    Gonzales, G.; Stackpoole, M.

    2014-01-01

    NASAs future robotic missions to Venus and outer planets, namely, Saturn, Uranus, Neptune, result in extremely high entry conditions that exceed the capabilities of current mid density ablators (PICA or Avcoat). Therefore mission planners assume the use of a fully dense carbon phenolic heatshield similar to what was flown on Pioneer Venus and Galileo. Carbon phenolic (CP) is a robust TPS however its high density and thermal conductivity constrain mission planners to steep entries, high heat fluxes, high pressures and short entry durations, in order for CP to be feasible from a mass perspective. In 2012 the Game Changing Development Program in NASAs Space Technology Mission Directorate funded NASA ARC to investigate the feasibility of a Woven Thermal Protection System to meet the needs of NASAs most challenging entry missions. The high entry conditions pose certification challenges in existing ground based test facilities. Recent updates to NASAs IHF and AEDCs H3 high temperature arcjet test facilities enable higher heatflux (2000 Wcm2) and high pressure (5 atm) testing of TPS. Some recent thermal tests of woven TPS will be discussed in this paper. These upgrades have provided a way to test higher entry conditions of potential outer planet and Venus missions and provided a baseline against carbon phenolic material. The results of these tests have given preliminary insight to sample configuration and physical recession profile characteristics.

  5. Three-stage entry game: The strategic effects of advertising

    Directory of Open Access Journals (Sweden)

    Kuzmanović Marija

    2011-01-01

    Full Text Available This paper analyzes the effects of investment in advertising in the three-stage entry game model with one incumbent and one potential entrant firm. It is shown that if a game theory is applied, under particular conditions, advertising can be used as a strategic weapon in the market entry game. Depending on the level of the advertising interaction factor, conditions for over-investment in advertising for strategic purposes are given. Furthermore, three specific cases are analyzed: strictly predatory advertising, informative advertising and the case when one firm’s advertising cannot directly influence the other firm's profit. For each of them, depending on the costs of advertising and marginal costs, equilibrium is determined, and conditions under which it is possible to deter the entry are given. It is shown that if the value of the advertising interaction factor increases, power of using advertising as a weapon to deter entry into the market decreases. Thus, in the case of informative advertising, advertising cannot be used as a tool for deterring entry into the market, while in the case of predatory advertising, it can. Also, we have proved that in the case of strictly informative advertising an over-investment never occurs, while in the two other cases, there is always over-investment either to deter or to accommodate the entry.

  6. Dynamics of ambulatory surgery centers and hospitals market entry.

    Science.gov (United States)

    Housman, Michael; Al-Amin, Mona

    2013-08-01

    In this article, we investigate the diversity of healthcare delivery organizations by comparing the market determinants of hospitals entry rates with those of ambulatory surgery centers (ASCs). Unlike hospitals, ASCs is one of the growing populations of specialized healthcare delivery organizations. There are reasons to believe that firm entry patterns differ within growing organizational populations since these markets are characterized by different levels of organizational legitimacy, technological uncertainty, and information asymmetry. We compare the entry patterns of firms in a mature population of hospitals to those of firms within a growing population of ASCs. By using patient-level datasets from the state of Florida, we break down our explanatory variables by facility type (ASC vs. hospital) and utilize negative binomial regression models to evaluate the impact of niche density on ASC and hospital entry. Our results indicate that ASCs entry rates is higher in markets with overlapping ASCs while hospitals entry rates are less in markets with overlapping hospitals and ASCs. These results are consistent with the notion that firms in growing populations tend to seek out crowded markets as they compete to occupy the most desirable market segments while firms in mature populations such as general hospitals avoid direct competition.

  7. Entry and Exit Stress Variation of Cold Rolling Strip

    Institute of Scientific and Technical Information of China (English)

    WANGDong—cheng

    2012-01-01

    The shortcomings of an exit stress variation formula which has been well accepted are analyzed~ it is found that the exit stress variation formula violates the premise of the law of volume constancy. The shortcomings of an en- try stress variation formula are analyzed too, and the basic assumption of the formula is uniform exit velocity. How- ever, for a rigid-plastic material uniform exit velocity implies that the lateral distributioi1 of elongation is uniform, so the exit stress must be uniform and any type of flatness defect is impossible, which is contrary to the practice. In fact, entry and exit velocity variation influence entry and exit stress variation, and entry and exit stress variation in- fluence entry and exit velocity variation too, so a precise explicit stress variation formula cannot be got easily. Con- sidering the relationship between stress variation and velocity variation, an iteration method is presented to calculate entry and exit stress variation of cold rolling strip. To avoid divergent phenomenon of the iteration course, a relaxa- tion factor method is adopted. The calculation results are compared with the entry and exit stress variation formula commonly used by many researchers. The difference is remarkable, while the result calculated agree more well with measured result if the exit elastic recovery zone is considered. Specially, the incoming flatnessI propagate efficiency calculated ~ives a more realistic result.

  8. Nursing medication administration and workflow using computerized physician order entry.

    Science.gov (United States)

    Tschannen, Dana; Talsma, Akkeneel; Reinemeyer, Nicholas; Belt, Christine; Schoville, Rhonda

    2011-07-01

    The benefits of computerized physician order entry systems have been described widely; however, the impact of computerized physician order entry on nursing workflow and its potential for error are unclear. The purpose of this study was to determine the impact of a computerized physician order entry system on nursing workflow. Using an exploratory design, nurses employed on an adult ICU (n = 36) and a general pediatric unit (n = 50) involved in computerized physician order entry-based medication delivery were observed. Nurses were also asked questions regarding the impact of computerized physician order entry on nursing workflow. Observations revealed total time required for administering medications averaged 8.45 minutes in the ICU and 9.93 minutes in the pediatric unit. Several additional steps were required in the process for pediatric patients, including preparing the medications and communicating with patients and family, which resulted in greater time associated with the delivery of medications. Frequent barriers to workflow were noted by nurses across settings, including system issues (ie, inefficient medication reconciliation processes, long order sets requiring more time to determine medication dosage), less frequent interaction between the healthcare team, and greater use of informal communication modes. Areas for nursing workflow improvement include (1) medication reconciliation/order duplication, (2) strategies to improve communication, and (3) evaluation of the impact of computerized physician order entry on practice standards.

  9. Acceptions of the "death"entry in language dictionaries

    Directory of Open Access Journals (Sweden)

    Jessica Camara Siqueira

    2013-08-01

    Full Text Available Language dictionaries present the meaning of an entry in a way not restricted to linguistic information, since we also have interdisciplinary and contextual aspects that dialogue with socio-cultural issues in which the entry is inserted. Considering the potential character of the study of contextual meanings, the “death” entry was chosen to carry out a comparative analysis among language dictionaries. The choice was motivated by the recurrence of this entry in ancient and contemporary dictionaries, and the fact of its having a concept that allows various historical, social and ideological discussions. The goal is to reveal the different nuances of the “death” entry in language dictionaries, observing four main aspects: etymology, diachrony, synonymic construction and meaning of “death” in school dictionaries. Based on lexicographical studies of classical authors, we did a comparative analysis of meanings of “death” in different types of language dictionaries. We found that in each group dictionary we may find traces of ideological choices in the construction of the contextual meaning of the “death” entry.

  10. Calcium influx factor (CIF) as a diffusible messenger for the activation of capacitative calcium entry in Xenopus oocytes.

    Science.gov (United States)

    Kim, H Y; Hanley, M R

    1999-06-30

    Acid extracts of thapsigargin-treated Xenopus oocytes revealed Ca2(+)-dependent Cl- currents by microinjection into Xenopus oocytes. These currents were detected in highly purified fractions by carrying out a sequence of purification steps including gel filtration chromatography and high performance thin layer chromatography. The nature of the membrane currents evoked by the highly purified fractions were carried by chloride ions as blockade by the selective chloride channel blocker 1 mM niflumic acid. Injection of the Ca2+ chelator 1,2-bis(2-aminophenoxy)ethane-N,N,N',N'-tetraacetic acid (BAPTA) eradicated the current activities, indicating that the current responses are completely Ca2(+)-dependent. Moreover, the currents were sensitive to the removal of extracellular calcium, indicating the dependence on calcium entry through plasma membrane calcium entry channels. These results elucidate that the highly purified fractions aquired by thapsigargin-stimulated oocytes is an authentic calcium influx factor (CIF). Thus, the detection of increased CIF production from thapsigargin treatment in Xenopus oocytes would give strong support for the existence of CIF as a diffusible messenger for the activation of capacitative calcium entry pathways in Xenopus oocytes.

  11. White spot syndrome virus entry is dependent on multiple endocytic routes and strongly facilitated by Cq-GABARAP in a CME-dependent manner.

    Science.gov (United States)

    Chen, Rong-Yuan; Shen, Kai-Li; Chen, Zhen; Fan, Wei-Wei; Xie, Xiao-Lu; Meng, Chuang; Chang, Xue-Jiao; Zheng, Li-Bing; Jeswin, Joseph; Li, Cheng-Hua; Wang, Ke-Jian; Liu, Hai-Peng

    2016-07-07

    White spot syndrome virus (WSSV) is a lethal pathogen of shrimp and many other crustaceans, including crayfish. However, the molecular mechanism underlying its cellular entry remains elusive due to the lack of shrimp cell lines for viral propagation. Crayfish hematopoietic tissue (Hpt) cell culture was recently established as a good model for WSSV infection study. Here, we showed that multiple endocytic routes, including clathrin-mediated endocytosis (CME), macropinocytosis and caveolae-mediated endocytosis, were indispensably employed for the viral entry into Hpt cell of the crayfish Cherax quadricarinatus. Intriguingly, cellular autophagic activity was positively correlated with efficient viral entry, in which a key autophagy-related protein, γ-aminobutyric acid receptor-associated protein (Cq-GABARAP), that not only localized but also co-localized with WSSV on the Hpt cell membrane, strongly facilitated WSSV entry by binding to the viral envelope VP28 in a CME-dependent manner that was negatively regulated by Cq-Rac1. Furthermore, cytoskeletal components, including Cq-β-tubulin and Cq-β-actin, bound to both recombinant rCq-GABARAP and WSSV envelope proteins, which likely led to viral entry promotion via cooperation with rCq-GABARAP. Even under conditions that promoted viral entry, rCq-GABARAP significantly reduced viral replication at an early stage of infection, which was probably caused by the formation of WSSV aggregates in the cytoplasm.

  12. Generic entry, reformulations and promotion of SSRIs in the US.

    Science.gov (United States)

    Huskamp, Haiden A; Donohue, Julie M; Koss, Catherine; Berndt, Ernst R; Frank, Richard G

    2008-01-01

    Previous research has shown that a manufacturer's promotional strategy for a brand name drug is typically affected by generic entry. However, little is known about how newer strategies to extend patent life, including product reformulation introduction or obtaining approval to market for additional clinical indications, influence promotion. To examine the relationships among promotional expenditures, generic entry, reformulation entry and new indication approval. We used quarterly data on national product-level promotional spending (including expenditures for physician detailing and direct-to-consumer advertising [DTCA], and the retail value of free samples distributed in physician offices) for selective serotonin reuptake inhibitors (SSRIs) over the period 1997-2004. We estimated econometric models of detailing, DTCA and total quarterly promotional expenditures as a function of the timing of generic entry, entry of new product formulations and US FDA approval for new clinical indications for existing medications in the SSRI class. Expenditures by pharmaceutical manufacturers for promotion of antidepressant medications was the main outcome measure. Over the period 1997-2004, there was considerable variation in the composition of promotional expenditures across the SSRIs. Promotional expenditures for the original brand molecule decreased dramatically when a reformulation of the molecule was introduced. Promotional spending (both total and detailing alone) for a specific molecule was generally lower after generic entry than before, although the effect of generic entry on promotional spending appears to be closely linked with the choice of product reformulation strategy pursued by the manufacturer. Detailing expenditures for Paxil were increased after the manufacturer received FDA approval to market the drug for generalized anxiety disorder (GAD), while the likelihood of DTCA outlays for the drug was not changed. In contrast, FDA approval to market Paxil and Zoloft

  13. Virus entry. Lassa virus entry requires a trigger-induced receptor switch.

    Science.gov (United States)

    Jae, Lucas T; Raaben, Matthijs; Herbert, Andrew S; Kuehne, Ana I; Wirchnianski, Ariel S; Soh, Timothy K; Stubbs, Sarah H; Janssen, Hans; Damme, Markus; Saftig, Paul; Whelan, Sean P; Dye, John M; Brummelkamp, Thijn R

    2014-06-27

    Lassa virus spreads from a rodent to humans and can lead to lethal hemorrhagic fever. Despite its broad tropism, chicken cells were reported 30 years ago to resist infection. We found that Lassa virus readily engaged its cell-surface receptor α-dystroglycan in avian cells, but virus entry in susceptible species involved a pH-dependent switch to an intracellular receptor, the lysosome-resident protein LAMP1. Iterative haploid screens revealed that the sialyltransferase ST3GAL4 was required for the interaction of the virus glycoprotein with LAMP1. A single glycosylated residue in LAMP1, present in susceptible species but absent in birds, was essential for interaction with the Lassa virus envelope protein and subsequent infection. The resistance of Lamp1-deficient mice to Lassa virus highlights the relevance of this receptor switch in vivo.

  14. Quality of data entry using single entry, double entry and automated forms processing--an example based on a study of patient-reported outcomes

    DEFF Research Database (Denmark)

    Paulsen, Aksel; Overgaard, Søren; Lauritsen, Jens Martin

    2012-01-01

    The clinical and scientific usage of patient-reported outcome measures is increasing in the health services. Often paper forms are used. Manual double entry of data is defined as the definitive gold standard for transferring data to an electronic format, but the process is laborious. Automated...

  15. Reversible and efficient activation of HIV-1 cell entry by a tyrosine-sulfated peptide dissects endocytic entry and inhibitor mechanisms.

    Science.gov (United States)

    Platt, Emily J; Gomes, Michelle M; Kabat, David

    2014-04-01

    HIV-1 membranes contain gp120-gp41 trimers. Binding of gp120 to CD4 and a coreceptor (CCR5 or CXCR4) reduces the constraint on metastable gp41, enabling a series of conformational changes that cause membrane fusion. An analytic difficulty occurs because these steps occur slowly and asynchronously within cohorts of adsorbed virions. We previously isolated HIV-1JRCSF variants that efficiently use CCR5 mutants severely damaged in the tyrosine-sulfated amino terminus or extracellular loop 2. Surprisingly, both independent adaptations included gp120 mutations S298N, F313L, and N403S, supporting other evidence that they function by weakening gp120's grip on gp41 rather than by altering gp120 binding to specific CCR5 sites. Although several natural HIV-1 isolates reportedly use CCR5(Δ18) (CCR5 with a deletion of 18 N-terminal amino acids, including the tyrosine-sulfated region) when the soluble tyrosine-sulfated peptide is present, we show that HIV-1JRCSF with the adaptive mutations [HIV-1JRCSF(Ad)] functions approximately 100 times more efficiently and that coreceptor activation is reversible, enabling synchronous efficient entry control under physiological conditions. This system revealed that three-stranded gp41 folding intermediates susceptible to the inhibitor enfuvirtide form slowly and asynchronously on cell surface virions but resolve rapidly, with virions generally forming only one target. Adsorbed virions asynchronously and transiently become competent for entry at 37°C but are inactivated if the CCR5 peptide is absent during their window of opportunity. This competency is conferred by endocytosis, which results in inactivation if the peptide is absent. For both wild-type and adapted HIV-1 isolates, early gp41 refolding steps obligatorily occur on cell surfaces, whereas the final step(s) is endosomal. This system powerfully dissects HIV-1 entry and inhibitor mechanisms. We present a powerful means to reversibly and efficiently activate or terminate HIV-1 entry

  16. Neural stem cell-derived exosomes mediate viral entry

    Directory of Open Access Journals (Sweden)

    Sims B

    2014-10-01

    Full Text Available Brian Sims,1,2,* Linlin Gu,3,* Alexandre Krendelchtchikov,3 Qiana L Matthews3,4 1Division of Neonatology, Department of Pediatrics, 2Department of Cell, Developmental, and Integrative Biology, 3Division of Infectious Diseases, Department of Medicine, 4Center for AIDS Research, University of Alabama at Birmingham, Birmingham, AL, USA *These authors contributed equally to this work Background: Viruses enter host cells through interactions of viral ligands with cellular receptors. Viruses can also enter cells in a receptor-independent fashion. Mechanisms regarding the receptor-independent viral entry into cells have not been fully elucidated. Exosomal trafficking between cells may offer a mechanism by which viruses can enter cells.Methods: To investigate the role of exosomes on cellular viral entry, we employed neural stem cell-derived exosomes and adenovirus type 5 (Ad5 for the proof-of-principle study. Results: Exosomes significantly enhanced Ad5 entry in Coxsackie virus and adenovirus receptor (CAR-deficient cells, in which Ad5 only had very limited entry. The exosomes were shown to contain T-cell immunoglobulin mucin protein 4 (TIM-4, which binds phosphatidylserine. Treatment with anti-TIM-4 antibody significantly blocked the exosome-mediated Ad5 entry.Conclusion: Neural stem cell-derived exosomes mediated significant cellular entry of Ad5 in a receptor-independent fashion. This mediation may be hampered by an antibody specifically targeting TIM-4 on exosomes. This set of results will benefit further elucidation of virus/exosome pathways, which would contribute to reducing natural viral infection by developing therapeutic agents or vaccines. Keywords: neural stem cell-derived exosomes, adenovirus type 5, TIM-4, viral entry, phospholipids

  17. Improving laboratory data entry quality using Six Sigma.

    Science.gov (United States)

    Elbireer, Ali; Le Chasseur, Julie; Jackson, Brooks

    2013-01-01

    The Uganda Makerere University provides clinical laboratory support to over 70 clients in Uganda. With increased volume, manual data entry errors have steadily increased, prompting laboratory managers to employ the Six Sigma method to evaluate and reduce their problems. The purpose of this paper is to describe how laboratory data entry quality was improved by using Six Sigma. The Six Sigma Quality Improvement (QI) project team followed a sequence of steps, starting with defining project goals, measuring data entry errors to assess current performance, analyzing data and determining data-entry error root causes. Finally the team implemented changes and control measures to address the root causes and to maintain improvements. Establishing the Six Sigma project required considerable resources and maintaining the gains requires additional personnel time and dedicated resources. After initiating the Six Sigma project, there was a 60.5 percent reduction in data entry errors from 423 errors a month (i.e. 4.34 Six Sigma) in the first month, down to an average 166 errors/month (i.e. 4.65 Six Sigma) over 12 months. The team estimated the average cost of identifying and fixing a data entry error to be $16.25 per error. Thus, reducing errors by an average of 257 errors per month over one year has saved the laboratory an estimated $50,115 a year. The Six Sigma QI project provides a replicable framework for Ugandan laboratory staff and other resource-limited organizations to promote quality environment. Laboratory staff can deliver excellent care at a lower cost, by applying QI principles. This innovative QI method of reducing data entry errors in medical laboratories may improve the clinical workflow processes and make cost savings across the health care continuum.

  18. 14 CFR 121.709 - Airworthiness release or aircraft log entry.

    Science.gov (United States)

    2010-01-01

    ... 14 Aeronautics and Space 3 2010-01-01 2010-01-01 false Airworthiness release or aircraft log entry... Airworthiness release or aircraft log entry. (a) No certificate holder may operate an aircraft after maintenance... appropriate entry in the aircraft log. (b) The airworthiness release or log entry required by paragraph (a)...

  19. Using quantum mechanics to improve estimates of amino acid side chain rotamer energies.

    Science.gov (United States)

    Renfrew, P Douglas; Butterfoss, Glenn L; Kuhlman, Brian

    2008-06-01

    Amino acid side chains adopt a discrete set of favorable conformations typically referred to as rotamers. The relative energies of rotamers partially determine which side chain conformations are more often observed in protein structures and accurate estimates of these energies are important for predicting protein structure and designing new proteins. Protein modelers typically calculate side chain rotamer energies by using molecular mechanics (MM) potentials or by converting rotamer probabilities from the protein database (PDB) into relative free energies. One limitation of the knowledge-based energies is that rotamer preferences observed in the PDB can reflect internal side chain energies as well as longer-range interactions with the rest of the protein. Here, we test an alternative approach for calculating rotamer energies. We use three different quantum mechanics (QM) methods (second order Møller-Plesset (MP2), density functional theory (DFT) energy calculation using the B3LYP functional, and Hartree-Fock) to calculate the energy of amino acid rotamers in a dipeptide model system, and then use these pre-calculated values in side chain placement simulations. Energies were calculated for over 36,000 different conformations of leucine, isoleucine, and valine dipeptides with backbone torsion angles from the helical and strand regions of the Ramachandran plot. In a subset of cases these energies differ significantly from those calculated with standard molecular mechanics potentials or those derived from PDB statistics. We find that in these cases the energies from the QM methods result in more accurate placement of amino acid side chains in structure prediction tests.

  20. Caveolin-1 associated adenovirus entry into human corneal cells.

    Directory of Open Access Journals (Sweden)

    Mohammad A Yousuf

    Full Text Available The cellular entry of viruses represents a critical area of study, not only for viral tropism, but also because viral entry dictates the nature of the immune response elicited upon infection. Epidemic keratoconjunctivitis (EKC, caused by viruses within human adenovirus species D (HAdV-D, is a severe, ocular surface infection associated with corneal inflammation. Clathrin-mediated endocytosis has previously been shown to play a critical role in entry of other HAdV species into many host cell types. However, HAdV-D endocytosis into corneal cells has not been extensively studied. Herein, we show an essential role for cholesterol rich, lipid raft microdomains and caveolin-1, in the entry of HAdV-D37 into primary human corneal fibroblasts. Cholesterol depletion using methyl-β-cyclodextrin (MβCD profoundly reduced viral infection. When replenished with soluble cholesterol, the effect of MβCD was reversed, allowing productive viral infection. HAdV-D37 DNA was identified in caveolin-1 rich endosomal fractions after infection. Src kinase activity was also increased in caveolin-1 rich endosomal fractions after infection, and Src phosphorylation and CXCL1 induction were both decreased in caveolin-1-/- mice corneas compared to wild type mice. siRNA knock down of caveolin-1 in corneal cells reduced chemokine induction upon viral infection, and caveolin-1-/- mouse corneas showed reduced cellular entry of HAdV-D37. As a control, HAdV-C2, a non-corneal pathogen, appeared to utilize the caveolar pathway for entry into A549 cells, but failed to infect corneal cells entirely, indicating virus and cell specific tropism. Immuno-electron microscopy confirmed the presence of caveolin-1 in HAdV-D37-containing vesicles during the earliest stages of viral entry. Collectively, these experiments indicate for the first time that HAdV-D37 uses a lipid raft mediated caveolin-1 associated pathway for entry into corneal cells, and connects the processes of viral entry with

  1. Advanced entry guidance algorithm with landing footprint computation

    Science.gov (United States)

    Leavitt, James Aaron

    The design and performance evaluation of an entry guidance algorithm for future space transportation vehicles is presented. The algorithm performs two functions: on-board trajectory planning and trajectory tracking. The planned longitudinal path is followed by tracking drag acceleration, as is done by the Space Shuttle entry guidance. Unlike the Shuttle entry guidance, lateral path curvature is also planned and followed. A new trajectory planning function for the guidance algorithm is developed that is suitable for suborbital entry and that significantly enhances the overall performance of the algorithm for both orbital and suborbital entry. In comparison with the previous trajectory planner, the new planner produces trajectories that are easier to track, especially near the upper and lower drag boundaries and for suborbital entry. The new planner accomplishes this by matching the vehicle's initial flight path angle and bank angle, and by enforcing the full three-degree-of-freedom equations of motion with control derivative limits. Insights gained from trajectory optimization results contribute to the design of the new planner, giving it near-optimal downrange and crossrange capabilities. Planned trajectories and guidance simulation results are presented that demonstrate the improved performance. Based on the new planner, a method is developed for approximating the landing footprint for entry vehicles in near real-time, as would be needed for an on-board flight management system. The boundary of the footprint is constructed from the endpoints of extreme downrange and crossrange trajectories generated by the new trajectory planner. The footprint algorithm inherently possesses many of the qualities of the new planner, including quick execution, the ability to accurately approximate the vehicle's glide capabilities, and applicability to a wide range of entry conditions. Footprints can be generated for orbital and suborbital entry conditions using a pre

  2. Dopamine Receptor Activation Increases HIV Entry into Primary Human Macrophages

    Science.gov (United States)

    Gaskill, Peter J.; Yano, Hideaki H.; Kalpana, Ganjam V.; Javitch, Jonathan A.; Berman, Joan W.

    2014-01-01

    Macrophages are the primary cell type infected with HIV in the central nervous system, and infection of these cells is a major component in the development of neuropathogenesis and HIV-associated neurocognitive disorders. Within the brains of drug abusers, macrophages are exposed to increased levels of dopamine, a neurotransmitter that mediates the addictive and reinforcing effects of drugs of abuse such as cocaine and methamphetamine. In this study we examined the effects of dopamine on HIV entry into primary human macrophages. Exposure to dopamine during infection increased the entry of R5 tropic HIV into macrophages, irrespective of the concentration of the viral inoculum. The entry pathway affected was CCR5 dependent, as antagonizing CCR5 with the small molecule inhibitor TAK779 completely blocked entry. The effect was dose-dependent and had a steep threshold, only occurring above 108 M dopamine. The dopamine-mediated increase in entry required dopamine receptor activation, as it was abrogated by the pan-dopamine receptor antagonist flupenthixol, and could be mediated through both subtypes of dopamine receptors. These findings indicate that the effects of dopamine on macrophages may have a significant impact on HIV pathogenesis. They also suggest that drug-induced increases in CNS dopamine may be a common mechanism by which drugs of abuse with distinct modes of action exacerbate neuroinflammation and contribute to HIV-associated neurocognitive disorders in infected drug abusers. PMID:25268786

  3. Dopamine receptor activation increases HIV entry into primary human macrophages.

    Directory of Open Access Journals (Sweden)

    Peter J Gaskill

    Full Text Available Macrophages are the primary cell type infected with HIV in the central nervous system, and infection of these cells is a major component in the development of neuropathogenesis and HIV-associated neurocognitive disorders. Within the brains of drug abusers, macrophages are exposed to increased levels of dopamine, a neurotransmitter that mediates the addictive and reinforcing effects of drugs of abuse such as cocaine and methamphetamine. In this study we examined the effects of dopamine on HIV entry into primary human macrophages. Exposure to dopamine during infection increased the entry of R5 tropic HIV into macrophages, irrespective of the concentration of the viral inoculum. The entry pathway affected was CCR5 dependent, as antagonizing CCR5 with the small molecule inhibitor TAK779 completely blocked entry. The effect was dose-dependent and had a steep threshold, only occurring above 108 M dopamine. The dopamine-mediated increase in entry required dopamine receptor activation, as it was abrogated by the pan-dopamine receptor antagonist flupenthixol, and could be mediated through both subtypes of dopamine receptors. These findings indicate that the effects of dopamine on macrophages may have a significant impact on HIV pathogenesis. They also suggest that drug-induced increases in CNS dopamine may be a common mechanism by which drugs of abuse with distinct modes of action exacerbate neuroinflammation and contribute to HIV-associated neurocognitive disorders in infected drug abusers.

  4. A Novel Keyless Entry System Using Visible Light Communication

    Directory of Open Access Journals (Sweden)

    Kuniyoshi Okuda

    2014-10-01

    Full Text Available A major conventional car key is the mechanical key. When users inserted the key into a cylinder mechanical key and turn, users can unlock. The mechanical key may be able to be worn away for physical contact. And it may be impossible to use. Further the mechanical key may be damaged or destroyed by mischief. So a keyless entry system has been developed. The keyless entry system locks and unlocks using the infrared ray and radio waves communication. The keyless entry system does not require physical contacts. Therefore, the possibilities of damage due to mischief and be worn away are fell. However, the transmission ranges of infrared ray and radio waves communication are not clear. Submitting data might be tapped to the malicious people. If the information is tapped, then you have theft of the car and the risk of car break. We propose a keyless entry system using visible light communication in order to solve this problem. Visible light communication transmits signal using blinking light. Thus the transmission range is clear. The user can transmit the information only to the aimed place. Therefore, the usability is improved. We measure the durations of "take out the remote control", "put the aim" and "takes to unlock key" in order to evaluate the usability in the experiment. We also compared with the infrared ray communication and examined the superiority. Usability is improved in the experimental results, and usability is better than conventional keyless entry system.

  5. Structural and mechanistic studies of measles virus illuminate paramyxovirus entry.

    Directory of Open Access Journals (Sweden)

    Richard K Plemper

    2011-06-01

    Full Text Available Measles virus (MeV, a member of the paramyxovirus family of enveloped RNA viruses and one of the most infectious viral pathogens identified, accounts for major pediatric morbidity and mortality worldwide although coordinated efforts to achieve global measles control are in place. Target cell entry is mediated by two viral envelope glycoproteins, the attachment (H and fusion (F proteins, which form a complex that achieves merger of the envelope with target cell membranes. Despite continually expanding knowledge of the entry strategies employed by enveloped viruses, our molecular insight into the organization of functional paramyxovirus fusion complexes and the mechanisms by which the receptor binding by the attachment protein triggers the required conformational rearrangements of the fusion protein remain incomplete. Recently reported crystal structures of the MeV attachment protein in complex with its cellular receptors CD46 or SLAM and newly developed functional assays have now illuminated some of the fundamental principles that govern cell entry by this archetype member of the paramyxovirus family. Here, we review these advances in our molecular understanding of MeV entry in the context of diverse entry strategies employed by other members of the paramyxovirus family.

  6. A Gestalt approach to Gram-negative entry.

    Science.gov (United States)

    Silver, Lynn L

    2016-12-15

    A major obstacle confronting the discovery and development of new antibacterial agents to combat resistant Gram-negative (GN) organisms is the lack of a rational process for endowing compounds with properties that allow (or promote) entry into the bacterial cytoplasm. The major permeability difference between GN and Gram-positive (GP) bacteria is the GN outer membrane (OM) which is a permeability barrier itself and potentiates efflux pumps that expel compounds. Based on the fact that OM-permeable and efflux-deleted GNs are sensitive to many anti-GP drugs, recent efforts to approach the GN entry problem have focused on ways of avoiding efflux and transiting or compromising the OM, with the tacit assumption that this could allow entry of compounds into the GN cytoplasm. But bypassing the OM and efflux obstacles does not take into account the additional requirement of penetrating the cytoplasmic membrane (CM) whose sieving properties appear to be orthogonal to that of the OM. That is, tailoring compounds to transit the OM may well compromise their ability to enter the cytoplasm. Thus, a Gestalt approach to understanding the chemical requirements for GN entry seems a useful adjunct. This might consist of characterizing compounds which reach the cytoplasm, grouping (or binning) by routes of entry and formulating chemical 'rules' for those bins. This will require acquisition of data on large numbers of compounds, using non-activity-dependent methods of measuring accumulation in the cytoplasm. Copyright © 2016 Elsevier Ltd. All rights reserved.

  7. Trading Robustness Requirements in Mars Entry Trajectory Design

    Science.gov (United States)

    Lafleur, Jarret M.

    2009-01-01

    One of the most important metrics characterizing an atmospheric entry trajectory in preliminary design is the size of its predicted landing ellipse. Often, requirements for this ellipse are set early in design and significantly influence both the expected scientific return from a particular mission and the cost of development. Requirements typically specify a certain probability level (6-level) for the prescribed ellipse, and frequently this latter requirement is taken at 36. However, searches for the justification of 36 as a robustness requirement suggest it is an empirical rule of thumb borrowed from non-aerospace fields. This paper presents an investigation into the sensitivity of trajectory performance to varying robustness (6-level) requirements. The treatment of robustness as a distinct objective is discussed, and an analysis framework is presented involving the manipulation of design variables to effect trades between performance and robustness objectives. The scenario for which this method is illustrated is the ballistic entry of an MSL-class Mars entry vehicle. Here, the design variable is entry flight path angle, and objectives are parachute deploy altitude performance and error ellipse robustness. Resulting plots show the sensitivities between these objectives and trends in the entry flight path angles required to design to these objectives. Relevance to the trajectory designer is discussed, as are potential steps for further development and use of this type of analysis.

  8. BST2/Tetherin enhances entry of human cytomegalovirus.

    Directory of Open Access Journals (Sweden)

    Kasinath Viswanathan

    2011-11-01

    Full Text Available Interferon-induced BST2/Tetherin prevents budding of vpu-deficient HIV-1 by tethering mature viral particles to the plasma membrane. BST2 also inhibits release of other enveloped viruses including Ebola virus and Kaposi's sarcoma associated herpesvirus (KSHV, indicating that BST2 is a broadly acting antiviral host protein. Unexpectedly however, recovery of human cytomegalovirus (HCMV from supernatants of BST2-expressing human fibroblasts was increased rather than decreased. Furthermore, BST2 seemed to enhance viral entry into cells since more virion proteins were released into BST2-expressing cells and subsequent viral gene expression was elevated. A significant increase in viral entry was also observed upon induction of endogenous BST2 during differentiation of the pro-monocytic cell line THP-1. Moreover, treatment of primary human monocytes with siRNA to BST2 reduced HCMV infection, suggesting that BST2 facilitates entry of HCMV into cells expressing high levels of BST2 either constitutively or in response to exogenous stimuli. Since BST2 is present in HCMV particles we propose that HCMV entry is enhanced via a reverse-tethering mechanism with BST2 in the viral envelope interacting with BST2 in the target cell membrane. Our data suggest that HCMV not only counteracts the well-established function of BST2 as inhibitor of viral egress but also employs this anti-viral protein to gain entry into BST2-expressing hematopoietic cells, a process that might play a role in hematogenous dissemination of HCMV.

  9. Rhadinovirus host entry by co-operative infection.

    Directory of Open Access Journals (Sweden)

    Clara Lawler

    2015-03-01

    Full Text Available Rhadinoviruses establish chronic infections of clinical and economic importance. Several show respiratory transmission and cause lung pathologies. We used Murid Herpesvirus-4 (MuHV-4 to understand how rhadinovirus lung infection might work. A primary epithelial or B cell infection often is assumed. MuHV-4 targeted instead alveolar macrophages, and their depletion reduced markedly host entry. While host entry was efficient, alveolar macrophages lacked heparan - an important rhadinovirus binding target - and were infected poorly ex vivo. In situ analysis revealed that virions bound initially not to macrophages but to heparan⁺ type 1 alveolar epithelial cells (AECs. Although epithelial cell lines endocytose MuHV-4 readily in vitro, AECs did not. Rather bound virions were acquired by macrophages; epithelial infection occurred only later. Thus, host entry was co-operative - virion binding to epithelial cells licensed macrophage infection, and this in turn licensed AEC infection. An antibody block of epithelial cell binding failed to block host entry: opsonization provided merely another route to macrophages. By contrast an antibody block of membrane fusion was effective. Therefore co-operative infection extended viral tropism beyond the normal paradigm of a target cell infected readily in vitro; and macrophage involvement in host entry required neutralization to act down-stream of cell binding.

  10. Space Shuttle Orbiter entry guidance and control system sensitivity analysis

    Science.gov (United States)

    Stone, H. W.; Powell, R. W.

    1976-01-01

    An approach has been developed to determine the guidance and control system sensitivity to off-nominal aerodynamics for the Space Shuttle Orbiter during entry. This approach, which uses a nonlinear six-degree-of-freedom interactive, digital simulation, has been applied to both the longitudinal and lateral-directional axes for a portion of the orbiter entry. Boundary values for each of the aerodynamic parameters have been identified, the key parameters have been determined, and system modifications that will increase system tolerance to off-nominal aerodynamics have been recommended. The simulations were judged by specified criteria and the performance was evaluated by use of key dependent variables. The analysis is now being expanded to include the latest shuttle guidance and control systems throughout the entry speed range.

  11. Shuttle entry guidance revisited using nonlinear geometric methods

    Science.gov (United States)

    Mease, Kenneth D.; Kremer, Jean-Paul

    1994-11-01

    The entry guidance law for the space shuttle orbiter is revisited using nonlinear geometric methods. The shuttle guidance concept is to track a reference drag trajectory that has been designed to lead a specified range and velocity. It is shown that the approach taken in the original derivation of the shuttle entry guidance has much in common with the more recently developed feedback linearization method of differential geometric control. Using the feedback linearization method, however, an alternative, potentially superior, guidance law was formulated. Comparing the two guidance laws based performance domains in state space, taking into account the nonlinear dynamics, the alternative guidance law achieves the desired performance over larger domains in state space; the stability domain of the laws are similar. With larger operating domain for the shuttle or some other entry vehicle, the alternative guidance law should be considered.

  12. Confined space entry program for the Westinghouse Hanford Company

    Energy Technology Data Exchange (ETDEWEB)

    Cornell, T.M.

    1993-11-01

    To comply with anticipated OSHA regulatory requirements concerning Permit-Required Confined Spaces, Westinghouse Hanford Company (WHC) created a Confined Spaces Task Team. The primary focus of the task team was to prepare a formal Confined Space Entry (CSE) Program that would ensure full compliance with the anticipated OSHA requirements. A comprehensive training plan was also prepared and submitted for approval as soon as the new CSE Program was approved and released for implementation. On January 14, 1993, OSHA released their final ruling which contained several further changes, requiring the WHC Confined Space Entry Program and Training Plan to be revised. The revised training manual and lessons learned in establishing a Confined Space Entry Program are presented.

  13. Pesticides re-entry dermal exposure of workers in greenhouses.

    Science.gov (United States)

    Caffarelli, V; Conte, E; Correnti, A; Gatti, R; Musmeci, F; Morali, G; Spagnoli, G; Tranfo, G; Triolo, L; Vita, M; Zappa, G

    2004-01-01

    This research has the aim to evaluate the risk of pesticide dermal exposure for workers in greenhouses. We considered the following crops: tomato, cucumber and strawberry, largely spread in Bracciano lake district. The pesticides monitored were: tetradifon on strawberry: metalaxyl, azoxystrobin and fenarimol on cucumber; acrinathrin, azoxystrobin and chlorpyrifos ethyl on tomato. The dermal exposure was evaluated by Dislodgeable Foliar Residue (DFR) measurements employing transfer coefficients got from literature. For risk evaluation, we have compared the dermal exposures with Acceptable Operator Exposure Levels (AOEL). The re-entry time were obtained intercepting the dose decay curves with AOEL values. The re-entry times result higher than two days in the cases of chlorpyrifos on tomato (re-entry time: 3 days), azoxystrobin on tomato (4 days), and tetradifon on strawberry (8 days). The need of measuring specific transfer coefficients is pointed out.

  14. Mars Entry Atmospheric Data System Modeling, Calibration, and Error Analysis

    Science.gov (United States)

    Karlgaard, Christopher D.; VanNorman, John; Siemers, Paul M.; Schoenenberger, Mark; Munk, Michelle M.

    2014-01-01

    The Mars Science Laboratory (MSL) Entry, Descent, and Landing Instrumentation (MEDLI)/Mars Entry Atmospheric Data System (MEADS) project installed seven pressure ports through the MSL Phenolic Impregnated Carbon Ablator (PICA) heatshield to measure heatshield surface pressures during entry. These measured surface pressures are used to generate estimates of atmospheric quantities based on modeled surface pressure distributions. In particular, the quantities to be estimated from the MEADS pressure measurements include the dynamic pressure, angle of attack, and angle of sideslip. This report describes the calibration of the pressure transducers utilized to reconstruct the atmospheric data and associated uncertainty models, pressure modeling and uncertainty analysis, and system performance results. The results indicate that the MEADS pressure measurement system hardware meets the project requirements.

  15. Tannin inhibits HIV-1 entry by targeting gp41

    Institute of Scientific and Technical Information of China (English)

    Lin L(U); Shu-wen LIU; Shi-bo JIANG; Shu-guang WU

    2004-01-01

    AIM: To investigate the mechanism by which tannin inhibits HIV-1 entry into target cells. METHODS: The inhibitory activity of tannin on HIV-1 replication and entry was detected by p24 production and HIV-1-mediated cell fusion, respectively. The inhibitory activity on the gp41 six-helix bundle formation was determined by an improved sandwich ELISA. RESULTS: Tannins from different sources showed potent inhibitory activity on HIV-1 replication,HIV-1-mediated cell fusion, and the gp4 six-helix bundle formation. CONCLUSION: Tannin inhibits HIV-1 entry into target cells by interfering with the gp41 six-helix bundle formation, thus blocking HIV-1 fusion with the target cell.

  16. Towards a Market Entry Framework for Digital Payment Platforms

    DEFF Research Database (Denmark)

    Kazan, Erol; Damsgaard, Jan

    2016-01-01

    This study presents a framework to understand and explain the design and configuration of digital payment platforms and how these platforms create conditions for market entries. By embracing the theoretical lens of platform envelopment, we employed a multiple and comparative-case study...... in a European setting by using our framework as an analytical lens to assess market-entry conditions. We found that digital payment platforms have acquired market entry capabilities, which is achieved through strategic platform design (i.e., platform development and service distribution) and technology design...... (i.e., issuing evolutionary and revolutionary payment instruments). The studied cases reveal that digital platforms leverage payment services as a mean to bridge and converge core and adjacent platform markets. In so doing, platform envelopment strengthens firms’ market position in their respective...

  17. Mars Atmospheric Entry Integrated Navigation with Partial Intermittent Measurements

    Directory of Open Access Journals (Sweden)

    Tai-shan Lou

    2017-01-01

    Full Text Available Signal degradation suffered by the vehicle is a combination brownout and blackout during Mars atmospheric entry. The communications brownout means that signal fades and blackout means that the signal is lost completely. The communications brownout and blackout periods are analyzed and predicted with an altitude and velocity profiles. In the brownout period, the range measurements between the vehicle and the orbiters are modeled as intermittent measurements with the radio signal arrival probabilities, which are distributed as a Rayleigh distribution of the electron number density around the entry vehicle. A new integrated navigation strategy during the Mars atmospheric entry phase is proposed to consider the probabilities of the radio measurements in the communications brownout and blackout periods under the IMU/beacon scenario based on the information filter with intermittent measurements. Numerical navigation simulations are designed to show the performance of the proposed navigation strategy under the integrated navigation scenario.

  18. Towards a Market Entry Framework for Digital Payment Platforms

    DEFF Research Database (Denmark)

    Kazan, Erol; Damsgaard, Jan

    2016-01-01

    (i.e., issuing evolutionary and revolutionary payment instruments). The studied cases reveal that digital platforms leverage payment services as a mean to bridge and converge core and adjacent platform markets. In so doing, platform envelopment strengthens firms’ market position in their respective......This study presents a framework to understand and explain the design and configuration of digital payment platforms and how these platforms create conditions for market entries. By embracing the theoretical lens of platform envelopment, we employed a multiple and comparative-case study...... in a European setting by using our framework as an analytical lens to assess market-entry conditions. We found that digital payment platforms have acquired market entry capabilities, which is achieved through strategic platform design (i.e., platform development and service distribution) and technology design...

  19. Disambiguating bilingual nominal entries against WordNet

    CERN Document Server

    Rigau, G; Rigau, German; Agirre, Eneko

    1995-01-01

    This paper explores the acquisition of conceptual knowledge from bilingual dictionaries (French/English, Spanish/English and English/Spanish) using a pre-existing broad coverage Lexical Knowledge Base (LKB) WordNet. Bilingual nominal entries are disambiguated agains WordNet, therefore linking the bilingual dictionaries to WordNet yielding a multilingual LKB (MLKB). The resulting MLKB has the same structure as WordNet, but some nodes are attached additionally to disambiguated vocabulary of other languages. Two different, complementary approaches are explored. In one of the approaches each entry of the dictionary is taken in turn, exploiting the information in the entry itself. The inferential capability for disambiguating the translation is given by Semantic Density over WordNet. In the other approach, the bilingual dictionary was merged with WordNet, exploiting mainly synonymy relations. Each of the approaches was used in a different dictionary. Both approaches attain high levels of precision on their own, sh...

  20. Nonequilibrium radiative heating of a Jovian entry body

    Science.gov (United States)

    Tiwari, S. N.; Subramanian, S. V.

    1979-01-01

    The influence of nonlocal thermodynamic equilibrium (NLTE) radiative transfer on radiative and convective heating of a Jovian entry body is investigated. The flow in the shock layer is assumed to be axisymmetric, viscous, and in chemical equilibrium. The chemical species considered for the collisional deactivation processes are H2, H, H+. The NLTE radiative transfer equations are derived for multilevel energy transitions. The rotational and vibrational energy modes are assumed to be in local thermodynamic equilibrium. The results indicate that higher-level energy transitions have little influence on the overall NLTE results. The NLTE results, however, are found to be greatly influenced by the temperature distributions in the shock layer. The convective and radiative heating to the entry body are reduced significantly because of the NLTE conditions; the reduction in convective heating, however, is relatively small. The influence of NLTE is found to be greater at higher entry altitudes.

  1. HIV entry inhibitors: a new generation of antiretroviral drugs

    Institute of Scientific and Technical Information of China (English)

    Elias KRAMBOVITIS; Filippos PORICHIS; Demetrios A SPANDIDOS

    2005-01-01

    AIDS is presently treatable, and patients can have a good prognosis due to the success of highly active antiretroviral therapy (HAART), but it is still not curable or preventable. High toxicity of HAART, and the emergence of drug resistance add to the imperative to continue research into new strategies and interventions.Considerable progress in the understanding of HIV attachment and entry into host cells has suggested new possibilities for rationally designing agents that interfere with this process. The approval and introduction of the fusion inhibitor enfuvirtide (Fuzeon) for clinical use signals a new era in AIDS therapeutics. Here we review the crucial steps the virus uses to achieve cell entry, which merit attention as potential targets, and the compounds at pre-clinical and clinical development stages, reported to effectively inhibit cell entry.

  2. Mars Science Laboratory Entry Guidance Improvements for Mars 2018 (DRAFT)

    Science.gov (United States)

    Garcia-Llama, Eduardo; Winski, Richard G.; Shidner, Jeremy D.; Ivanov, Mark C.; Grover, Myron R.; Prakash, Ravi

    2011-01-01

    In 2011, the Mars Science Laboratory (MSL) will be launched in a mission to deliver the largest and most capable rover to date to the surface of Mars. A follow on MSL-derived mission, referred to as Mars 2018, is planned for 2018. Mars 2018 goals include performance enhancements of the Entry, Descent and Landing over that of its predecessor MSL mission of 2011. This paper will discuss the main elements of the modified 2018 EDL preliminary design that will increase performance on the entry phase of the mission. In particular, these elements will increase the parachute deploy altitude to allow for more time margin during the subsequent descent and landing phases and reduce the delivery ellipse size at parachute deploy through modifications in the entry reference trajectory design, guidance trigger logic design, and the effect of additional navigation hardware.

  3. Features of Human Herpesvirus-6A and -6B Entry

    Directory of Open Access Journals (Sweden)

    Takahiro Maeki

    2012-01-01

    Full Text Available Human herpesvirus-6 (HHV-6 is a T lymphotropic herpesvirus belonging to the Betaherpesvirinae subfamily. HHV-6 was long classified into variants A and B (HHV-6A and HHV-6B; however, recently, HHV-6A and HHV-6B were reclassified as different species. The process of herpesvirus entry into target cells is complicated, and in the case of HHV-6A and HHV-6B, the detailed mechanism remains to be elucidated, although both viruses are known to enter cells via endocytosis. In this paper, (1 findings about the cellular receptor and its ligand for HHV-6A and HHV-6B are summarized, and (2 a schematic model of HHV-6A’s replication cycle, including its entry, is presented. In addition, (3 reports showing the importance of lipids in both the HHV-6A envelope and target-cell membrane for viral entry are reviewed, and (4 glycoproteins involved in cell fusion are discussed.

  4. The role of digital data entry in participatory environmental monitoring.

    Science.gov (United States)

    Brammer, Jeremy R; Brunet, Nicolas D; Burton, A Cole; Cuerrier, Alain; Danielsen, Finn; Dewan, Kanwaljeet; Herrmann, Thora Martina; Jackson, Micha V; Kennett, Rod; Larocque, Guillaume; Mulrennan, Monica; Pratihast, Arun Kumar; Saint-Arnaud, Marie; Scott, Colin; Humphries, Murray M

    2016-12-01

    Many argue that monitoring conducted exclusively by scientists is insufficient to address ongoing environmental challenges. One solution entails the use of mobile digital devices in participatory monitoring (PM) programs. But how digital data entry affects programs with varying levels of stakeholder participation, from nonscientists collecting field data to nonscientists administering every step of a monitoring program, remains unclear. We reviewed the successes, in terms of management interventions and sustainability, of 107 monitoring programs described in the literature (hereafter programs) and compared these with case studies from our PM experiences in Australia, Canada, Ethiopia, Ghana, Greenland, and Vietnam (hereafter cases). Our literature review showed that participatory programs were less likely to use digital devices, and 2 of our 3 more participatory cases were also slow to adopt digital data entry. Programs that were participatory and used digital devices were more likely to report management actions, which was consistent with cases in Ethiopia, Greenland, and Australia. Programs engaging volunteers were more frequently reported as ongoing, but those involving digital data entry were less often sustained when data collectors were volunteers. For the Vietnamese and Canadian cases, sustainability was undermined by a mismatch in stakeholder objectives. In the Ghanaian case, complex field protocols diminished monitoring sustainability. Innovative technologies attract interest, but the foundation of effective participatory adaptive monitoring depends more on collaboratively defined questions, objectives, conceptual models, and monitoring approaches. When this foundation is built through effective partnerships, digital data entry can enable the collection of more data of higher quality. Without this foundation, or when implemented ineffectively or unnecessarily, digital data entry can be an additional expense that distracts from core monitoring objectives

  5. Optometry Australia Entry-level Competency Standards for Optometry 2014.

    Science.gov (United States)

    Kiely, Patricia M; Slater, Jared

    2015-01-01

    Competency standards for entry-level to the profession of optometry in Australia were first developed in 1993, revised in 1997 and 2000, and again in 2008, when therapeutic competency standards were introduced but differentiated from the entry-level competencies. Therapeutic competencies were an additional requirement for the purpose of endorsing optometric registration to allow prescription of medicines for conditions of the eye. Recent changes to educational and registration requirements mean that therapeutic competencies are now required at entry-level. To address this and to ensure the standards reflect current best practice, a full revision of the standards was undertaken. A steering committee oversaw the review of the standards, which involved a literature review, workshops with optometrists and broad consultation with stakeholders, including the Optometry Board of Australia, individual optometrists and employers of optometrists, to identify changes needed. Representatives of the profession from Australia and New Zealand and from academia in Australia were involved. A modified document based on the feedback received was circulated to the State Divisions and the National Board of the then Optometrists Association Australia. The updated standards reflect the state of entry to the optometric profession in 2014; competencies for prescribing of scheduled medicines are included, new material has been added, other areas have been modified. The updated entry-level competency standards were adopted on behalf of the profession by the National Board of the then Optometrists Association Australia in March 2014. Competency standards have been updated so that they continue to be current and useful for the profession, individual optometrists and Australian and New Zealand registration authorities for the purposes of accreditation of optometric programs and assessment of overseas-trained optometrists. This paper details the revision process and presents the 2014 version of

  6. Alternative endocytosis pathway for productive entry of hepatitis C virus.

    Science.gov (United States)

    Matsuda, Mami; Suzuki, Ryosuke; Kataoka, Chikako; Watashi, Koichi; Aizaki, Hideki; Kato, Nobuyuki; Matsuura, Yoshiharu; Suzuki, Tetsuro; Wakita, Takaji

    2014-12-01

    Previous studies have shown that hepatitis C virus (HCV) enters human hepatic cells through interaction with a series of cellular receptors, followed by clathrin-mediated, pH-dependent endocytosis. Here, we investigated the mechanisms of HCV entry into multiple HCV-permissive human hepatocyte-derived cells using trans-complemented HCV particles (HCVtcp). Knockdown of CD81 and claudin-1, or treatment with bafilomycin A1, reduced infection in Huh-7 and Huh7.5.1 cells, suggesting that HCV entered both cell types via receptor-mediated, pH-dependent endocytosis. Interestingly, knockdown of the clathrin heavy chain or dynamin-2 (Dyn2), as well as expression of the dominant-negative form of Dyn2, reduced infection of Huh-7 cells with HCVtcp, whereas infectious entry of HCVtcp into Huh7.5.1 cells was not impaired. Infection of Huh7.5.1 cells with culture-derived HCV (HCVcc) via a clathrin-independent pathway was also observed. Knockdown of caveolin-1, ADP-ribosylation factor 6 (Arf6), flotillin, p21-activated kinase 1 (PAK1) and the PAK1 effector C-terminal binding protein 1 of E1A had no inhibitory effects on HCVtcp infection into Huh7.5.1 cells, thus suggesting that the infectious entry pathway of HCV into Huh7.5.1 cells was not caveolae-mediated, or Arf6- and flotillin-mediated endocytosis and macropinocytosis, but rather may have occurred via an undefined endocytic pathway. Further analysis revealed that HCV entry was clathrin- and dynamin-dependent in ORL8c and HepCD81/miR122 cells, but productive entry of HCV was clathrin- and dynamin-independent in Hep3B/miR122 cells. Collectively, these data indicated that HCV entered different target cells through different entry routes.

  7. BeppoSAX equatorial uncontrolled re-entry

    Science.gov (United States)

    Portelli, C.

    The X-ray astronomy satellite BeppoSAX (Satellite per Astronomia X, "Beppo" in honor of Giuseppe Occhialini), is a project of the Italian Space Agency (ASI) with participation of the Netherlands Agency for Aerospace Programs (NIVR). BeppoSAX was launched by an Atlas G Centaur directly into a circular 600 km- orbit at 3.9 degrees inclination on April 30th, 1996. The satellite is a three axis stabilized spacecraft with a total mass of about 1400 kg. The current (May 1, 2002) flight altitude is about 470 km and its uncontrolled re-entry is predicted late in 2002, or in 2003, with a 26 kg of hydrazine on board that could not be vented or used for controlled re-entry due to gyro's package total failure. Due to the relatively high mass of BeppoSAX, it has to be expected that parts of the satellite will survive the re-entry into the earth atmosphere. The Italian Space Agency has committed a study to HTG for the analysis of the destructive phase of the uncontrolled atmospheric re-entry by means of a dedicated European software tool (SCARAB). The expected outputs will be used in order to determine how much of the spacecraft and how many fragments parts of it will reach the ground on the equatorial earth zone. This paper will address the peculiarities of the spacecraft initial status, its risks at end of life and the SCARAB modelling as well as its 6D flight dynamics re-entry analysis results also in terms of the destruction history tree. Consideration will be made on the ground dispersion and casualt y area due to the very restricted equatorial zone impacted. References B. Fritsche, H. Klinkrad, A. Kashkovsky, E.Grinberg; Spacecraft Disintegration during uncontrolled atmospheric entry ; IAA-99-IAA.6.7.02; 50t h IAC 4-8 Oct. 1999

  8. Using common spatial distributions of atoms to relate functionally divergent influenza virus N10 and N11 protein structures to functionally characterized neuraminidase structures, toxin cell entry domains, and non-influenza virus cell entry domains.

    Directory of Open Access Journals (Sweden)

    Arthur Weininger

    Full Text Available The ability to identify the functional correlates of structural and sequence variation in proteins is a critical capability. We related structures of influenza A N10 and N11 proteins that have no established function to structures of proteins with known function by identifying spatially conserved atoms. We identified atoms with common distributed spatial occupancy in PDB structures of N10 protein, N11 protein, an influenza A neuraminidase, an influenza B neuraminidase, and a bacterial neuraminidase. By superposing these spatially conserved atoms, we aligned the structures and associated molecules. We report spatially and sequence invariant residues in the aligned structures. Spatially invariant residues in the N6 and influenza B neuraminidase active sites were found in previously unidentified spatially equivalent sites in the N10 and N11 proteins. We found the corresponding secondary and tertiary structures of the aligned proteins to be largely identical despite significant sequence divergence. We found structural precedent in known non-neuraminidase structures for residues exhibiting structural and sequence divergence in the aligned structures. In N10 protein, we identified staphylococcal enterotoxin I-like domains. In N11 protein, we identified hepatitis E E2S-like domains, SARS spike protein-like domains, and toxin components shared by alpha-bungarotoxin, staphylococcal enterotoxin I, anthrax lethal factor, clostridium botulinum neurotoxin, and clostridium tetanus toxin. The presence of active site components common to the N6, influenza B, and S. pneumoniae neuraminidases in the N10 and N11 proteins, combined with the absence of apparent neuraminidase function, suggests that the role of neuraminidases in H17N10 and H18N11 emerging influenza A viruses may have changed. The presentation of E2S-like, SARS spike protein-like, or toxin-like domains by the N10 and N11 proteins in these emerging viruses may indicate that H17N10 and H18N11 sialidase

  9. Using Common Spatial Distributions of Atoms to Relate Functionally Divergent Influenza Virus N10 and N11 Protein Structures to Functionally Characterized Neuraminidase Structures, Toxin Cell Entry Domains, and Non-Influenza Virus Cell Entry Domains

    Science.gov (United States)

    Weininger, Arthur; Weininger, Susan

    2015-01-01

    The ability to identify the functional correlates of structural and sequence variation in proteins is a critical capability. We related structures of influenza A N10 and N11 proteins that have no established function to structures of proteins with known function by identifying spatially conserved atoms. We identified atoms with common distributed spatial occupancy in PDB structures of N10 protein, N11 protein, an influenza A neuraminidase, an influenza B neuraminidase, and a bacterial neuraminidase. By superposing these spatially conserved atoms, we aligned the structures and associated molecules. We report spatially and sequence invariant residues in the aligned structures. Spatially invariant residues in the N6 and influenza B neuraminidase active sites were found in previously unidentified spatially equivalent sites in the N10 and N11 proteins. We found the corresponding secondary and tertiary structures of the aligned proteins to be largely identical despite significant sequence divergence. We found structural precedent in known non-neuraminidase structures for residues exhibiting structural and sequence divergence in the aligned structures. In N10 protein, we identified staphylococcal enterotoxin I-like domains. In N11 protein, we identified hepatitis E E2S-like domains, SARS spike protein-like domains, and toxin components shared by alpha-bungarotoxin, staphylococcal enterotoxin I, anthrax lethal factor, clostridium botulinum neurotoxin, and clostridium tetanus toxin. The presence of active site components common to the N6, influenza B, and S. pneumoniae neuraminidases in the N10 and N11 proteins, combined with the absence of apparent neuraminidase function, suggests that the role of neuraminidases in H17N10 and H18N11 emerging influenza A viruses may have changed. The presentation of E2S-like, SARS spike protein-like, or toxin-like domains by the N10 and N11 proteins in these emerging viruses may indicate that H17N10 and H18N11 sialidase-facilitated cell

  10. Developing international market entry strategy for cultural tourism of Turkey

    Directory of Open Access Journals (Sweden)

    Faruk Alaeddinoğlu

    2009-03-01

    Full Text Available The aims of this paper are to examine potential international markets for culture tourism of Turkey and to determine a mode of entry strategy for it. The structure of this paper includes screening, identification, and selection stage based on applied various analysis, techniques, methods, and statistics. The major findings here suggest that South Korea and Canada are two possible foreign markets to penetrate. After deeply analysis of South Korea and Canada outbound tourism market, opening overseas tourism promotion office and applying agency are recommended as an appropriate mode of entry strategy for them, respectively. In this regard, practical implications are also mentioned for Destination Marketing Organisation of Turkey.

  11. Geometry of Weyl theory for Jacobi matrices with matrix entries

    CERN Document Server

    Schulz-Baldes, Hermann

    2008-01-01

    A Jacobi matrix with matrix entries is a self-adjoint block tridiagonal matrix with invertible blocks on the off-diagonals. The Weyl surface describing the dependence of Green's matrix on the boundary conditions is interpreted as the set of maximally isotropic subspace of a quadratic from given by the Wronskian. Analysis of the possibly degenerate limit quadratic form leads to the limit point/limit surface theory of maximal symmetric extensions for semi-infinite Jacobi matrices with matrix entries with arbitrary deficiency indices. The resolvent of the extensions is explicitly calculated.

  12. Entry, Descent and Landing Systems Analysis Study: Phase 1 Report

    Science.gov (United States)

    DwyerCianciolo, Alicia M.; Davis, Jody L.; Komar, David R.; Munk, Michelle M.; Samareh, Jamshid A.; Powell, Richard W.; Shidner, Jeremy D.; Stanley, Douglas O.; Wilhite, Alan W.; Kinney, David J.; McGuire, M. Kathleen; Arnold, James O.; Howard, Austin R.; Sostaric, Ronald R.; Studak, Joseph W.; Zumwalt, Carlie H.; Llama, Eduardo G.; Casoliva, Jordi; Ivanov, Mark C.; Clark, Ian; Sengupta, Anita

    2010-01-01

    NASA senior management commissioned the Entry, Descent and Landing Systems Analysis (EDL-SA) Study in 2008 to identify and roadmap the Entry, Descent and Landing (EDL) technology investments that the agency needed to make in order to successfully land large payloads at Mars for both robotic and human-scale missions. This paper summarizes the motivation, approach and top-level results from Year 1 of the study, which focused on landing 10-50 mt on Mars, but also included a trade study of the best advanced parachute design for increasing the landed payloads within the EDL architecture of the Mars Science Laboratory (MSL) mission

  13. Experience of a Medicaid nursing home entry cohort

    Science.gov (United States)

    Ray, Wayne A.; Federspiel, Charles F.; Baugh, David K.; Dodds, Suzanne

    1989-01-01

    Long-term care cost-containment policies have focused on reducing the numbers of persons entering nursing homes. To provide insight and background for such efforts, the authors studied the experience of Medicaid nursing home entry cohorts in three individual States. They found substantial interstate variation in rates of nursing home entry and subsequent patterns of discharge, suggesting the operation of fundamentally different policies for provision of Medicaid nursing home services. Analysis of the cost effectiveness and quality of care implications of these policies may provide guidance for future cost-containment efforts. PMID:10313279

  14. The V domain of dog PVRL4 (nectin-4) mediates canine distemper virus entry and virus cell-to-cell spread

    Energy Technology Data Exchange (ETDEWEB)

    Delpeut, Sebastien; Noyce, Ryan S. [The Department of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada B3H 1X5 (Canada); IWK Health Centre, Canadian Center for Vaccinology, Goldbloom Pavilion, Halifax, Nova Scotia, Canada B3H 1X5 (Canada); Richardson, Christopher D., E-mail: chris.richardson@dal.ca [The Department of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada B3H 1X5 (Canada); IWK Health Centre, Canadian Center for Vaccinology, Goldbloom Pavilion, Halifax, Nova Scotia, Canada B3H 1X5 (Canada); The Department of Pediatrics, Dalhousie University, Halifax, Nova Scotia (Canada)

    2014-04-15

    The entry of canine distemper virus (CDV) is a multistep process that involves the attachment of CDV hemagglutinin (H) to its cellular receptor, followed by fusion between virus and cell membranes. Our laboratory recently identified PVRL4 (nectin-4) to be the epithelial receptor for measles and canine distemper viruses. In this study, we demonstrate that the V domain of PVRL4 is critical for CDV entry and virus cell-to-cell spread. Furthermore, four key amino acid residues within the V domain of dog PVRL4 and two within the CDV hemagglutinin were shown to be essential for receptor-mediated virus entry. - Highlights: • PVRL4 (nectin-4) is the epithelial cell receptor for measles and canine distemper viruses. • V domain of PVRL4 is critical for CDV entry, cell-to-cell spread, and syncytia formation. • Chimeric PVRL1 backbone substituted with the V domain of PVRL4 can function as a receptor. • Amino acids (F132/P133/A134/G135) within the V domain are essential for PVRL4 receptor activity. • Amino acids (P493/Y539) within CDV H protein are essential for PVRL4 receptor interaction.

  15. DCl Transport through Dodecyl Sulfate Films on Salty Glycerol: Effects of Seawater Ions on Gas Entry.

    Science.gov (United States)

    Shaloski, Michael A; Sobyra, Thomas B; Nathanson, Gilbert M

    2015-12-17

    Gas-liquid scattering experiments were employed to measure the entry and dissociation of the acidic gas DCl into salty glycerol coated with dodecyl sulfate ions (DS(-) = CH3(CH2)11OSO3(-)). Five sets of salty solutions were examined: 0.25 and 0.5 M NaCl, 0.25 M MgCl2, 0.25 M CaCl2, and artificial sea salt. DS(-) bulk concentrations were varied from 0 to 11 mM, generating DS(-) surface coverages of up to 34% of a compact monolayer, as determined by surface tension and argon scattering measurements. DS(-) surface segregation is enhanced by the dissolved salts in the order MgCl2 ≈ CaCl2 > sea salt > NaCl. We find that DCl penetration through the dodecyl chains decreases at first gradually and then sharply as more chains segregate to the surface, dropping from 70% entry on bare glycerol to 11% for DS(-) surface concentrations of 1.8 × 10(14) cm(-2). When plotted against DS(-) surface concentration, the DCl entry probabilities fall within a single band for all solutions. These observations imply that the monovalent Na(+) and divalent Ca(2+) and Mg(2+) ions do not bind differently enough to the ROSO3(-) headgroup to significantly alter the diffusive passage of DCl molecules through the dodecyl chains at the same DS(-) chain density. The chief difference among the salts is the greater propensity for the divalent salts to expel the soluble ionic surfactant to the surface.

  16. Airborne re-entry observation experiment SLIT: UV spectroscopy during STARDUST and ATV1 re-entry

    Science.gov (United States)

    Löhle, Stefan; Wernitz, Ricarda; Herdrich, Georg; Fertig, Markus; Röser, Hans-Peter; Ritter, Heiko

    2011-09-01

    Emission spectra during re-entry have been measured in 2006 for the STARDUST capsule and in 2008 for the ATV1 "Jules Verne" re-entry. This paper summarizes the approach to design the airborne UV spectroscopic setup and its modifications with respect to the missions. For the STARDUST mission, results of data analysis of data presented in 2008 are given while for the ATV1 observation first spectra of the main disruption are exemplary presented. The surface radiation during the STARDUST re-entry is used to estimate convective and radiative heat flux using different analytical models. A first look at the spectroscopic footprint of ATV1 shows that during the first explosive event, a severe break-up of the main ATV1 structure occurs. However, a correlation with an explosion of fuel could not be observed.

  17. Acute - Glossary Entry - Genetics Home Reference [Genetics Home Reference (Glossary)

    Lifescience Database Archive (English)

    Full Text Available | F | G | H | I | J | K | L | M | N | O | P | Q-R | S | T | U | V | W | X | Y-Z Acute Definition(s) Having ...ding Medical Terminology . Published : October 27, 2014 Acute - Glossary Entry - Genetics Home Reference ...

  18. 76 FR 13703 - New Origin Entry Separation & Containerization Standards

    Science.gov (United States)

    2011-03-14

    ... AGENCY: Postal Service TM . ACTION: Proposed rule. SUMMARY: The Postal Service is proposing to revise... March 14, 2011 Part II Postal Service 39 CFR Part 111 New Origin Entry Separation & Containerization Standards; Proposed Rule #0;#0;Federal Register / Vol. 76 , No. 49 / Monday, March 14, 2011 / Proposed Rules...

  19. Unraveling the Entry Mechanism of Baculoviruses and Its Evolutionary Implications

    NARCIS (Netherlands)

    Wang, M.; Wang, J.; Yin, F.; Tan, Y.; Deng, F.; Chen, X.; Jehle, J.A.; Vlak, J.M.; Hu, Zhihong; Wang, H.

    2014-01-01

    The entry of baculovirus budded virus into host cells is mediated by two distinct types of envelope fusion proteins (EFPs), GP64 and F protein. Phylogenetic analysis suggested that F proteins were ancestral baculovirus EFPs, whereas GP64 was acquired by progenitor group I alphabaculovirus more recen

  20. Essays on Empirical Industrial Organization : Entry and Innovation

    NARCIS (Netherlands)

    Fernandez Machado, Roxana

    2017-01-01

    The dissertation contains three essays on empirical industrial organization devoted to studying firms' strategic interaction in different settings. The first essay develops an entry model to address an important matter in the area of urban economics: the development of cities. In particular, it

  1. The importance of prior probabilities for entry page search

    NARCIS (Netherlands)

    Kraaij, W.; Westerveld, T.; Hiemstra, D.

    2002-01-01

    Een belangrijke groep zoekopdrachten op het internet heeft ten doel de startpagina of 'entry page' van een organisatie te vinden. Zoeken naar een startpagina verschilt sterk van algemeen of 'Ad Hoc' zoeken. De resultaten van een simpel algemeen zoeksysteem zijn teleurstellend. In het rapport wordt g

  2. 50 CFR 635.41 - Products denied entry.

    Science.gov (United States)

    2010-10-01

    ... vessel listed on the ICCAT record as engaged in illegal, unreported, and unregulated fishing will be... included on the ICCAT list as engaged in illegal, unreported, and unregulated fishing will be denied entry... ICCAT convention area by a fishing vessel that is required to be listed, but not listed on the...

  3. Application of an Aesthetic Evaluation Model to Data Entry Screens.

    Science.gov (United States)

    Ngo, D. C. L.; Byrne, J. G.

    2001-01-01

    Describes a new model for quantitatively assessing screen formats. Results of applying the model to data entry screens support the use of the model. Also described is a critiquing mechanism embedded in a user interface design environment as a demonstration of this approach. (Author/AEF)

  4. Does competitive entry structurally change key marketing metrics?

    NARCIS (Netherlands)

    Kornelis, M.; Dekimpe, de M.G.; Leeflang, P.S.H.

    2008-01-01

    To what extent does competitive entry create a structural change in keymarketingmetrics? New players may just be a temporal nuisance to incumbents, but could also fundamentally change the latter's performance evolution, or induce them to permanently alter their spending levels and/or pricing decisio

  5. Does competitive entry structurally change key marketing metrics?

    NARCIS (Netherlands)

    Kornelis, Marcel; Dekimpe, Marnik G.; Leeflang, Peter S. H.

    2008-01-01

    To what extent does competitive entry create a structural change in key marketing metrics? New players mayjust be a temporal nuisance to incumbents, but could also fundamentally change the latter's performance evolution, or induce them to permanently alter their spending levels and/or pricing decisi

  6. Entry Level Systems Analysts: What Does the Industry Want?

    Directory of Open Access Journals (Sweden)

    Donna M. Grant

    2016-06-01

    Full Text Available This study investigates the skill sets necessary for entry level systems analysts. Towards this end, the study combines two sources of data, namely, a content analysis of 200 systems analysts’ online job advertisements and a survey of 20 senior Information Systems (IS professionals. Based on Chi-square tests, the results reveal that most employers prefer entry level systems analysts with an undergraduate Computer Science degree. Furthermore, most of the employers prefer entry level systems analysts to have some years of experience as well as industry certifications. The results also reveal that there is a higher preference for entry level systems analysts who have non-technical and people skills (e.g., problem solving and oral communication. The empirical results from this study will inform IS educators as they develop future systems analysts. Additionally, the results will be useful to the aspiring systems analysts who need to make sure that they have the necessary job skills before graduating and entering the labor market.

  7. Detecting entanglement of states by entries of their density matrices

    CERN Document Server

    Qi, Xiaofei

    2010-01-01

    For any bipartite systems, a universal entanglement witness of rank-4 for pure states is obtained and a class of finite rank entanglement witnesses is constructed. In addition, a method of detecting entanglement of a state only by entries of its density matrix is obtained.

  8. Handling Qualities of a Capsule Spacecraft During Atmospheric Entry

    Science.gov (United States)

    Bilimoria, Karl D.; Mueller, Eric R.

    2010-01-01

    A piloted simulation was conducted to study handling qualities for capsule spacecraft entering the Earth s atmosphere. Eight evaluation pilots, including six pilot astronauts, provided Cooper-Harper ratings, workload ratings, and qualitative comments. The simulation began after descending through the atmospheric entry interface point and continued until the drogue parachutes deployed. There were two categories of piloting tasks, both of which required bank angle control. In one task category, the pilot followed a closed-loop bank angle command computed by the backup guidance system to manage g-loads during entry. In the other task category, the pilot used intuitive rules to determine the desired bank angle independently, based on an open-loop schedule of vertical speed, Mach, and total energy specified at several range-to-target gates along the entry trajectory. Pilots were able to accurately track the bank angle guidance commands and steered the capsule toward the recovery site with essentially the same range error as the benchmark autopilot trajectory albeit with substantially higher propellant usage, and the handling qualities for this task were satisfactory. Another key result was that the complex piloting task of atmospheric entry could be performed satisfactorily, even in the presence of large dispersions, by controlling bank angle to follow a simple open-loop schedule.

  9. Customizable tool for ecological data entry, assessment, monitoring, and interpretation

    Science.gov (United States)

    The Database for Inventory, Monitoring and Assessment (DIMA) is a highly customizable tool for data entry, assessment, monitoring, and interpretation. DIMA is a Microsoft Access database that can easily be used without Access knowledge and is available at no cost. Data can be entered for common, nat...

  10. 19 CFR 10.100 - Entry, examination, and tariff status.

    Science.gov (United States)

    2010-04-01

    ...; DEPARTMENT OF THE TREASURY ARTICLES CONDITIONALLY FREE, SUBJECT TO A REDUCED RATE, ETC. General Provisions United States Government Importations § 10.100 Entry, examination, and tariff status. Except as otherwise..., importations made by or for the account of any agency or office of the United States Government are subject...

  11. Early versus Late Entry to Preschool: Some Developmental Implications

    Science.gov (United States)

    Zupancic, Maja; Kavcic, Tina

    2004-01-01

    This study explores the relationship between cognitive, motor, social and personality development of 3-year-old children and the age of their entry into preschool, which ranged from 10 to 45 months. 247 children from 17 preschools in different regions of Slovenia, all implementing the same National Curriculum, participated. Preschool teachers…

  12. The Entrepreneurial Process: An International Analysis of Entry and Exit

    NARCIS (Netherlands)

    P.W. van der Zwan (Peter)

    2011-01-01

    textabstractThis thesis deals with the entrepreneurial process from an international perspective. The first part explores which people decide to enter entrepreneurship. A distinction is made between two modes of entrepreneurial entry: taking over an existing firm and starting a new firm. The second

  13. 19 CFR 147.43 - Entry under the Customs laws.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Entry under the Customs laws. 147.43 Section 147.43 Customs Duties U.S. CUSTOMS AND BORDER PROTECTION, DEPARTMENT OF HOMELAND SECURITY; DEPARTMENT OF... the Customs laws. (a) Payment of duties and taxes. Any applicable duties and internal revenue taxes...

  14. SME's perceptions regarding strategic and structural entry barriers

    NARCIS (Netherlands)

    Lutz, Clemens; Kemp, Ron; Dijkstra, S. Gerhard

    2007-01-01

    Abstract Extant literature discusses a large number of different entry barriers that may hamper market efficiency or entrepreneurial activity. In practice several of these barriers cohere and stem from the same root. Factor analysis is used to identify the underlying dimensions of these barriers. 7

  15. Partial Acquistion as an Entry Mode in Transition Economies

    DEFF Research Database (Denmark)

    Jakobsen, Kristian; Meyer, Klaus E.

    2007-01-01

    Multinational enterprises often acquire stakes in an existing enterprise when entering emerging economies. This paper examines the determinants of entry mode choices with a special focus on these partial acquisitions, which have received little attention in the scholarly literature. We show that ...

  16. Widening Participation and Contextual Entry Policy in Accounting and Finance

    Science.gov (United States)

    Rowbottom, N.

    2017-01-01

    The paper examines the performance of accounting and finance students entering university via a "widening participation" scheme that seeks to attract students who have been historically under-represented in higher education. Focus is placed on the policy of providing contextual entry offers that recognise that academic qualifications be…

  17. 9 CFR 93.806 - Animals refused entry.

    Science.gov (United States)

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Animals refused entry. 93.806 Section 93.806 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE EXPORTATION AND IMPORTATION OF ANIMALS (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION...

  18. Childhood cancer survivors' school (re)entry: Australian parents' perceptions.

    Science.gov (United States)

    McLoone, J K; Wakefield, C E; Cohn, R J

    2013-07-01

    Starting or returning to school after intense medical treatment can be academically and socially challenging for childhood cancer survivors. This study aimed to evaluate the school (re)entry experience of children who had recently completed cancer treatment. Forty-two semi-structured telephone interviews were conducted to explore parents' perceptions of their child's (re)entry to school after completing treatment (23 mothers, 19 fathers, parent mean age 39.5 years; child mean age 7.76 years). Interviews were analysed using the framework of Miles and Huberman and emergent themes were organised using QSR NVivo8. Parents closely monitored their child's school (re)entry and fostered close relationships with their child's teacher to ensure swift communication of concerns should they arise. The most commonly reported difficulty related to aspects of peer socialisation; survivors either displayed a limited understanding of social rules such as turn taking, or related more to older children or teachers relative to their peers. Additionally, parents placed a strong emphasis on their child's overall personal development, above academic achievement alone. Improved parent, clinician and teacher awareness of the importance of continued peer socialisation during the treatment period is recommended in order to limit the ongoing ramifications this may have on school (re)entry post-treatment completion.

  19. Risk Factors for Mosquito House Entry in the Lao PDR

    NARCIS (Netherlands)

    Hiscox, A.F.; Khammanithong, P.; Kaul, S.; Sananikhom, P.; Luthi, R.; Hill, N.; Brey, P.T.; Lindsay, S.W.

    2013-01-01

    Background Construction of the Nam Theun 2 hydroelectric project and flooding of a 450 km2 area of mountain plateau in south-central Lao PDR resulted in the resettlement of 6,300 people to newly built homes. We examined whether new houses would have altered risk of house entry by mosquitoes compared

  20. Macropinocytosis is the Entry Mechanism of Amphotropic Murine Leukemia Virus

    DEFF Research Database (Denmark)

    Rasmussen, Izabela; Vilhardt, Frederik

    2015-01-01

    The entry mechanism of murine amphotropic retrovirus (A-MLV) has not been unambiguously determined. We show here that A-MLV does not internalize by caveolae or other pinocytic mechanism, but by macropinocytosis. Thus A-MLV infection of mouse embryonic fibroblasts deficient for caveolin or dynamin...

  1. 40 CFR 86.1849-01 - Right of entry.

    Science.gov (United States)

    2010-07-01

    ... Complete Otto-Cycle Heavy-Duty Vehicles § 86.1849-01 Right of entry. (a) Any manufacturer who has applied for certification of a new motor vehicle subject to testing under this subpart, or any manufacturer or... activities connected with such testing are or were performed. (2) Any facility where any new motor vehicle...

  2. 25 CFR 227.12 - Mineral reserves in nonmineral entries.

    Science.gov (United States)

    2010-04-01

    ... 25 Indians 1 2010-04-01 2010-04-01 false Mineral reserves in nonmineral entries. 227.12 Section 227.12 Indians BUREAU OF INDIAN AFFAIRS, DEPARTMENT OF THE INTERIOR ENERGY AND MINERALS LEASING OF CERTAIN LANDS IN WIND RIVER INDIAN RESERVATION, WYOMING, FOR OIL AND GAS MINING How to Acquire...

  3. Risk Factors for Mosquito House Entry in the Lao PDR

    NARCIS (Netherlands)

    Hiscox, A.F.; Khammanithong, P.; Kaul, S.; Sananikhom, P.; Luthi, R.; Hill, N.; Brey, P.T.; Lindsay, S.W.

    2013-01-01

    Background Construction of the Nam Theun 2 hydroelectric project and flooding of a 450 km2 area of mountain plateau in south-central Lao PDR resulted in the resettlement of 6,300 people to newly built homes. We examined whether new houses would have altered risk of house entry by mosquitoes compared

  4. Spectral averaging techniques for Jacobi matrices with matrix entries

    CERN Document Server

    Sadel, Christian

    2009-01-01

    A Jacobi matrix with matrix entries is a self-adjoint block tridiagonal matrix with invertible blocks on the off-diagonals. Averaging over boundary conditions leads to explicit formulas for the averaged spectral measure which can potentially be useful for spectral analysis. Furthermore another variant of spectral averaging over coupling constants for these operators is presented.

  5. Public University Entry in Ghana: Is It Equitable?

    Science.gov (United States)

    Yusif, Hadrat; Yussof, Ishak; Osman, Zulkifly

    2013-01-01

    Public universities in Ghana are highly subsidised by the central government and account for about 80 per cent of university students in the country. Yet issues of fairness in terms of entry into the public university system have so far hardly been addressed. To find out whether participation in public university education is equitable, the…

  6. Oblique water entry of a three dimensional body

    Directory of Open Access Journals (Sweden)

    Scolan Yves-Marie

    2014-12-01

    Full Text Available The problem of the oblique water entry of a three dimensional body is considered. Wagner theory is the theoretical framework. Applications are discussed for an elliptic paraboloid entering an initially flat free surface. A dedicated experimental campaign yields a data base for comparisons. In the present analysis, pressure, force and dynamics of the wetted surface expansion are assessed.

  7. Late entry to antenatal care in New South Wales, Australia

    Directory of Open Access Journals (Sweden)

    Rubin George

    2006-08-01

    Full Text Available Abstract Aims This study aimed to assess the prevalence of women who entered antenatal care (ANC late and to identify factors related to the late entry to ANC in New South Wales (NSW in 2004. Methods The NSW Midwives Data Collection contained data of 85,034 women who gave birth in 2004. Data were downloaded using SAS and transferred to STATA 8.0. Entering ANC after 12 weeks of gestation was classified as late. The Andersen Health Seeking Behaviour Model was used for selection and analyses of related factors. Regression and hierarchical analyses were used to identify significant factors and their relative contributions to the variation of pregnancy duration at entry to ANC. Results 41% of women commenced ANC after 12 weeks of gestation. Inequality existed between groups of women with predisposing characteristics and enabling resources contributed more to the variation in pregnancy duration at entry to ANC than needs. The groups of women with highest risk were teenagers, migrants from developing countries, women living in Western Sydney, Aboriginal and Torres Strait Islanders, women with three or more previous pregnancies and heavy smokers. The high risk groups with largest number of women were migrants from developing countries and women living in Western Sydney. Conclusion A large number of women in NSW entered ANC late in their pregnancies. Efforts to increase early entry to ANC should be targeted on identified high risk groups of women.

  8. Human Mars Entry, Descent and Landing Architectures Study Overview

    Science.gov (United States)

    Polsgrove, Tara T.; Dwyer Cianciolo, Alicia

    2016-01-01

    Landing humans on Mars will require entry, descent and landing (EDL) capability beyond the current state of the art. Nearly twenty times more delivered payload and an order of magnitude improvement in precision landing capability will be necessary. Several EDL technologies capable of meeting the human class payload delivery requirements are being considered. The EDL technologies considered include low lift-to-drag vehicles like Hypersonic Inflatable Aerodynamic Decelerators (HIAD), Adaptable Deployable Entry and Placement Technology (ADEPT), and mid range lift-to-drag vehicles like rigid aeroshell configurations. To better assess EDL technology options and sensitivities to future human mission design variations, a series of design studies has been conducted. The design studies incorporate EDL technologies with conceptual payload arrangements defined by the Evolvable Mars Campaign to evaluate the integrated system with higher fidelity than have been performed to date. This paper describes the results of the design studies for a lander design using the HIAD, ADEPT and rigid shell entry technologies and includes system and subsystem design details including mass and power estimates. This paper will review the point design for three entry configurations capable of delivering a 20 t human class payload to the surface of Mars.

  9. Integrated alarm annunciation and entry control systems -- Survey results

    Energy Technology Data Exchange (ETDEWEB)

    Clever, J.J.; Arakaki, L.H.; Monaco, F.M.; Juarros, L.E.; Quintana, G.R.

    1993-10-01

    This report provides the results and analyses of a detailed survey undertaken in Summer 1993 to address integrated intrusion detection alarm annunciation and entry control system issues. This survey was undertaken as a first attempt toward beginning to answer questions about integrated systems and commercial capabilities to meet or partially meet US Department of Energy (DOE) site needs.

  10. Does competitive entry structurally change key marketing metrics?

    NARCIS (Netherlands)

    Kornelis, Marcel; Dekimpe, Marnik G.; Leeflang, Peter S. H.

    To what extent does competitive entry create a structural change in key marketing metrics? New players mayjust be a temporal nuisance to incumbents, but could also fundamentally change the latter's performance evolution, or induce them to permanently alter their spending levels and/or pricing

  11. Wigner law for matrices with dependent entries - a perturbative approach

    CERN Document Server

    Krajewski, T; Vu, D L

    2016-01-01

    We show that Wigner semi-circle law holds for Hermitian matrices with dependent entries, provided the deviation of the cumulants from the normalised Gaussian case obeys a simple power law bound in the size of the matrix. To establish this result, we use replicas interpreted as a zero-dimensional quantum field theoretical model whose effective potential obey a renormalisation group equation.

  12. 46 CFR 14.305 - Entries in continuous discharge book.

    Science.gov (United States)

    2010-10-01

    ... 46 Shipping 1 2010-10-01 2010-10-01 false Entries in continuous discharge book. 14.305 Section 14.305 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY MERCHANT MARINE OFFICERS AND SEAMEN SHIPMENT... discharge book. If the merchant mariner holds a continuous discharge book, the master or individual...

  13. 7 CFR 322.19 - Inspection; refusal of entry.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Inspection; refusal of entry. 322.19 Section 322.19 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE BEES, BEEKEEPING BYPRODUCTS, AND BEEKEEPING EQUIPMENT Importation...

  14. 7 CFR 322.35 - Ports of entry.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Ports of entry. 322.35 Section 322.35 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE BEES, BEEKEEPING BYPRODUCTS, AND BEEKEEPING EQUIPMENT Importation and Transit...

  15. 7 CFR 322.10 - Inspection; refusal of entry.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Inspection; refusal of entry. 322.10 Section 322.10 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE BEES, BEEKEEPING BYPRODUCTS, AND BEEKEEPING EQUIPMENT Importation...

  16. 7 CFR 322.11 - Ports of entry.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Ports of entry. 322.11 Section 322.11 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE BEES, BEEKEEPING BYPRODUCTS, AND BEEKEEPING EQUIPMENT Importation of...

  17. 7 CFR 322.20 - Ports of entry.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Ports of entry. 322.20 Section 322.20 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE BEES, BEEKEEPING BYPRODUCTS, AND BEEKEEPING EQUIPMENT Importation of...

  18. 7 CFR 322.34 - Inspection; refusal of entry.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Inspection; refusal of entry. 322.34 Section 322.34 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE BEES, BEEKEEPING BYPRODUCTS, AND BEEKEEPING EQUIPMENT Importation...

  19. Wikipedia pages as entry points for book search

    NARCIS (Netherlands)

    Koolen, M.; Kazai, G.; Craswell, N.; Baeza-Yates, R.; Boldi, P.; Ribeiro-Neto, B.; Cambazoglu, B.

    2009-01-01

    A lot of the world's knowledge is stored in books, which, as a result of recent mass-digitisation efforts, are increasingly available online. Search engines, such as Google Books, provide mechanisms for searchers to enter this vast knowledge space using queries as entry points. In this paper, we vie

  20. The role of digital data entry in participatory environmental monitoring

    NARCIS (Netherlands)

    Brammer, Jeremy R.; Brunet, Nicolas D.; Burton, A.C.; Cuerrier, Alain; Danielsen, Finn; Dewan, Kanwaljeet; Herrmann, Thora Martina; Jackson, Micha V.; Kennett, Rod; Larocque, Guillaume; Mulrennan, Monica; Pratihast, Arun Kumar; Saint-Arnaud, Marie; Scott, Colin; Humphries, Murray M.

    2016-01-01

    Many argue that monitoring conducted exclusively by scientists is insufficient to address ongoing environmental challenges. One solution entails the use of mobile digital devices in participatory monitoring (PM) programs. But how digital data entry affects programs with varying levels of