Full Text Available Abstract Background Acetabularia acetabulum is a giant unicellular green alga whose size and complex life cycle make it an attractive model for understanding morphogenesis and subcellular compartmentalization. The life cycle of this marine unicell is composed of several developmental phases. Juvenile and adult phases are temporally sequential but physiologically and morphologically distinct. To identify genes specific to juvenile and adult phases, we created two subtracted cDNA libraries, one adult-specific and one juvenile-specific, and analyzed 941 randomly chosen ESTs from them. Results Clustering analysis suggests virtually no overlap between the two libraries. Preliminary expression data also suggests that we were successful at isolating transcripts differentially expressed between the two developmental phases and that many transcripts are specific to one phase or the other. Comparison of our EST sequences against publicly available sequence databases indicates that ESTs from the adult and the juvenile libraries partition into different functional classes. Three conserved sequence elements were common to several of the ESTs and were also found within the genomic sequence of the carbonic anhydrase1 gene from A. acetabulum. To date, these conserved elements are specific to A. acetabulum. Conclusions Our data provide strong evidence that adult and juvenile phases in A. acetabulum vary significantly in gene expression. We discuss their possible roles in cell growth and morphogenesis as well as in phase change. We also discuss the potential role of the conserved elements found within the EST sequences in post-transcriptional regulation, particularly mRNA localization and/or stability.
Muhammad Raziq Rahimi Kooh
Full Text Available Seaweed is well known about for potential in chelating heavy metals. In this study, carbon paste electrodes were fabricated with siphonous seaweed Acetabularia acetabulum as the modifiers to sense lead (II and copper (II by square-wave anodic stripping voltammetry. Various scan rates and deposition potentials were measured to obtain the optimal peak current for Pb(II and Cu(II. Optimum conditions of Acetabularia-CPE for sensing Pb(II were at the scan rate of 75 mV/s and deposition potential of −800 mV, while for Cu(II sensing were at 100 mV/s and −300 mV, respectively. The electrodes were characterized by the duration of accumulation time, preconcentration over a range of standards, supporting electrolyte, and standard solutions of various pH values. Interference studies were carried out. Both Zn(II and Cu(II were found to interfere with Pb(II sensing, whereas only Zn(II causes interference with Cu(II sensing. The electrode was found to have good regeneration ability via electrochemical cleaning. Preliminary testing of complex samples such as NPK fertilisers, black soil, and sea salt samples was included.
Exchangeability of the b subunit of the Cl(-)-translocating ATPase of Acetabularia acetabulum with the beta subunit of E. coli F1-ATPase: construction of the chimeric beta subunits and complementation studies.
Ikeda, M; Kadowaki, H; Ikeda, H; Moritani, C; Kanazawa, H
The gene encoding the b subunit of the Cl(-)-translocating ATPase (aclB) was isolated from total RNA and poly(A)+ RNA of Acetabularia acetabulum and sequenced (total nucleotides of 3038 bp and an open reading frame with 478 amino acids). The deduced amino acid sequence showed high similarity to the beta subunit of the F type ATPases, but was different in the N-terminal 120 amino acids. The role of the N-terminal region was investigated using an F -ATPase beta-less mutant of E. coli, JP17. The JP17 strain expressing the aclB could not grow under conditions permitting oxidative phosphorylation, although ACLB was detected in the membrane fraction. The beta subunit was divided into three portions: amino acid position from 1 to 95 (portion A), 96 to 161 (portion B) and 162 to the C-terminus (portion C). The corresponding regions of ACLB were designated as portions A' (from 1 to 106), B' (from 107 to 172) and C' (from 173 to 478). Chimeric proteins with combinations of A-B'-C', A-B-C' and A'-B-C restored the function as the beta subunit in E. coli F0F1-complex, but those with combinations of A'-B'-C and A-B'-C had no function as the beta subunit. These findings suggested that portion B plays an important role in the assembly and function of the beta subunit in the F0F1-complex, while portion B' of ACLB exhibited inhibitory effects on assembly and function. In addition, portion A was also important for interaction of the beta subunit with the alpha subunit in E. coli F0F1-complex. These findings also suggested that the b subunit of the Cl(-)-translocating ATPase of A. acetabulum has a different function in the Cl(-)-translocating ATPase complex, although the primary structure resembled to the beta subunit of the F1-ATPase.
Sônia Maria Barreto Pereira
Full Text Available É apresentado o levantamento florístico sobre as clorofíceas marinhas bentônicas encontradas na Praia de Serrambi, litoral Sul do Estado de Pernambuco. O material estudado foi coletado em três estações, as quais foram visitadas mensalmente durante o período de abril de 1986 a setembro de 1987. As clorofíceas foram representadas na flora local por 39 espécies, três variedades e uma forma, pertencentes às ordens Ulotrichales, Ulvales, Siphonocladales, Cladophorales, Caulerpales e Dasycladales. Acetabularia calyculus Quoy & Gaimard. In Freycinet, Bryopsis pennata Lamouroux, Bryopsis plumosa (Hudson C. Agardh, Caulerpa ambigua Okamura, Caulerpa serrulata (Forsskål J. Agardh emend Børgesen, Chaetomorpha brachygona Harvey, Cladophora coelothrix Kützing, Cladophoropsis membranacea (C. Agardh Børgesen, Codium intertextum Collins & Hervey, Ernodesmis verticillata (Kützing Børgesen são novas referências para a flora do litoral de Pernambuco. Pringsheimiella scutata (Reinke von Höhnel ex Marchewianka o é também para o litoral continental do Brasil. Halimeda opuntia (L. Lamouroux foi hospedeira de maior número de epífitas, enquanto Bryopsis plumosa, quando epífita, foi a que cresceu sobre maior número de hospedeiros.This survey presents studies about benthics marine chlorophyceae found in the Serrambi Beach, South coast of Pernambuco. The material studied was collected in three stations, which were visited monthly during the period from April, 1986 to September, 1987. The chlorophyceae were represented in this flora by 39 species, three varieties and one form, from orders Ulotrichales, Ulvales, Siphonocladales, Cladophorales, Caulerpales and Dasycladales. Acetabularia calyculus Quoy & Gaimard. In Freycinet, Bryopsis pennata Lamouroux, Bryopsis plumosa (Hudson C. Agardh, Caulerpa ambigua Okamura, Caulerpa serrulata (Forsskål J. Agardh emend Børgesen, Chaetomorpha brachygona Harvey, Cladophora coelothrix Kützing, Cladophoropsis
The distribution of Elongation Factor-1 Alpha (EF-1alpha), Elongation Factor-Like (EFL), and a non-canonical genetic code in the ulvophyceae: discrete genetic characters support a consistent phylogenetic framework.
Gile, Gillian H; Novis, Philip M; Cragg, David S; Zuccarello, Giuseppe C; Keeling, Patrick J
The systematics of the green algal class Ulvophyceae have been difficult to resolve with ultrastructural and molecular phylogenetic analyses. Therefore, we investigated relationships among ulvophycean orders by determining the distribution of two discrete genetic characters previously identified only in the order Dasycladales. First, Acetabularia acetabulum uses the core translation GTPase Elongation Factor 1alpha (EF-1alpha) while most Chlorophyta instead possess the related GTPase Elongation Factor-Like (EFL). Second, the nuclear genomes of dasycladaleans A. acetabulum and Batophora oerstedii use a rare non-canonical genetic code in which the canonical termination codons TAA and TAG instead encode glutamine. Representatives of Ulvales and Ulotrichales were found to encode EFL, while Caulerpales, Dasycladales, Siphonocladales, and Ignatius tetrasporus were found to encode EF-1alpha, in congruence with the two major lineages previously proposed for the Ulvophyceae. The EF-1alpha of I. tetrasporus supports its relationship with Caulerpales/Dasycladales/Siphonocladales, in agreement with ultrastructural evidence, but contrary to certain small subunit rRNA analyses that place it with Ulvales/Ulotrichales. The same non-canonical genetic code previously described in A. acetabulum was observed in EF-1alpha sequences from Parvocaulis pusillus (Dasycladales), Chaetomorpha coliformis, and Cladophora cf. crinalis (Siphonocladales), whereas Caulerpales use the universal code. This supports a sister relationship between Siphonocladales and Dasycladales and further refines our understanding of ulvophycean phylogeny.
Osawa, S.; Jukes, T. H.; Watanabe, K.; Muto, A.
The genetic code, formerly thought to be frozen, is now known to be in a state of evolution. This was first shown in 1979 by Barrell et al. (G. Barrell, A. T. Bankier, and J. Drouin, Nature [London] 282:189-194, 1979), who found that the universal codons AUA (isoleucine) and UGA (stop) coded for methionine and tryptophan, respectively, in human mitochondria. Subsequent studies have shown that UGA codes for tryptophan in Mycoplasma spp. and in all nonplant mitochondria that have been examined. Universal stop codons UAA and UAG code for glutamine in ciliated protozoa (except Euplotes octacarinatus) and in a green alga, Acetabularia. E. octacarinatus uses UAA for stop and UGA for cysteine. Candida species, which are yeasts, use CUG (leucine) for serine. Other departures from the universal code, all in nonplant mitochondria, are CUN (leucine) for threonine (in yeasts), AAA (lysine) for asparagine (in platyhelminths and echinoderms), UAA (stop) for tyrosine (in planaria), and AGR (arginine) for serine (in several animal orders) and for stop (in vertebrates). We propose that the changes are typically preceded by loss of a codon from all coding sequences in an organism or organelle, often as a result of directional mutation pressure, accompanied by loss of the tRNA that translates the codon. The codon reappears later by conversion of another codon and emergence of a tRNA that translates the reappeared codon with a different assignment. Changes in release factors also contribute to these revised assignments. We also discuss the use of UGA (stop) as a selenocysteine codon and the early history of the code.
Edmunds, L N
This review considers cellular chronobiology and examines, at least in a superficial way, several classes of models and mechanisms that have been proposed for circadian rhythmicity and some of the experimental approaches that have appeared to be most productive. After a brief discussion of temporal organization and the metabolic, epigenetic, and circadian time domains, the general properties of circadian rhythms are enumerated. A survey of independent oscillations in isolated organs, tissues, and cells is followed by a review of selected circadian rhythms in eukaryotic microorganisms, with particular emphasis placed on the rhythm of cell division in the algal flagellate Euglena as a model system illustrating temporal differentiation. In the ensuing section, experimental approaches to circadian clock mechanisms are considered. The dissection of the clock by the use of chemical inhibitors is illustrated for the rhythm of bioluminescence in the marine dinoflagellate Gonyaulax and for the rhythm of photosynthetic capacity in the unicellular green alga Acetabularia. Alternatively, genetic analysis of circadian oscillators is considered in the green alga Chlamydomonas and in the bread mold Neurospora, both of which have yielded clock mutants and mutants having biochemical lesions that exhibit altered clock properties. On the basis of the evidence generated by these experimental approaches, several classes of biochemical and molecular models for circadian clocks have been proposed. These include strictly molecular models, feedback loop (network) models, transcriptional (tape-reading) models, and membrane models; some of their key elements and predictions are discussed. Finally, a number of general unsolved problems at the cellular level are briefly mentioned: cell cycle interfaces, the evolution of circadian rhythmicity, the possibility of multiple cellular oscillators, chronopharmacology and chronotherapy, and cell-cycle clocks in development and aging.
Full Text Available Abstract Background The Viridiplantae (green algae and land plants consist of two monophyletic lineages: the Chlorophyta and the Streptophyta. Most green algae belong to the Chlorophyta, while the Streptophyta include all land plants and a small group of freshwater algae known as Charophyceae. Eukaryotes attach a poly-A tail to the 3' ends of most nuclear-encoded mRNAs. In embryophytes, animals and fungi, the signal for polyadenylation contains an A-rich sequence (often AAUAAA or related sequence 13 to 30 nucleotides upstream from the cleavage site, which is commonly referred to as the near upstream element (NUE. However, it has been reported that the pentanucleotide UGUAA is used as polyadenylation signal for some genes in volvocalean algae. Results We set out to investigate polyadenylation signal differences between streptophytes and chlorophytes that may have emerged shortly after the evolutionary split between Streptophyta and Chlorophyta. We therefore analyzed expressed genes (ESTs from three streptophyte algae, Mesostigma viride, Klebsormidium subtile and Coleochaete scutata, and from two early-branching chlorophytes, Pyramimonas parkeae and Scherffelia dubia. In addition, to extend the database, our analyses included ESTs from six other chlorophytes (Acetabularia acetabulum, Chlamydomonas reinhardtii, Helicosporidium sp. ex Simulium jonesii, Prototheca wickerhamii, Scenedesmus obliquus and Ulva linza and one streptophyte (Closterium peracerosum. Our results indicate that polyadenylation signals in green algae vary widely. The UGUAA motif is confined to late-branching Chlorophyta. Most streptophyte algae do not have an A-rich sequence motif like that in embryophytes, animals and fungi. We observed polyadenylation signals similar to those of Arabidopsis and other land plants only in Mesostigma. Conclusion Polyadenylation signals in green algae show considerable variation. A new NUE (UGUAA was invented in derived chlorophytes and replaced
李永奖; 林瑞新; 张力成; 杨国敬; 蔡春元; 周德彪; 吴立军
Objective To study the effect of the orientation of total hip components, different head/neck ratios and collodiaphyseal angles on the impingement and the range of hip, and abtain the cup safe - zone and the optimum combination of cup and neck antever-sions. Methods A three - dimensional generic parametric and kinematic simulation module of THA was developed. Range of motion (ROM) of flexion ≥10°, internal -rotation≥30° at 90° flexion, extension ≥30° and external rotation ≥40° were defined as the normal criteria for desired ROM for activities of daily living, and ROM of flexion ≥120°, internal - rotation ≥45° at 90° flexion, extension ≥30° and external rotation ≥40° as the severe criteria. The range of the changes in the general head - neck ratios, the femoral neck an-teversion(FA), the anteveraion of acetabular,( AA) the inclination of the acetabular(IA) were 2.0-2.92, 0° -30°, 10° -60°, 0° -70° respectively. For two collodiaphyseal angle of 130° and 135°, the corresponding anteveraion of acetabular related to the inclination of the acetabular which every 5° was calculated. All data was analyzed. Results It is recommended that HNR be more than 2.37 as it further increases the size of safe - zone. The size of cup safe - zone of the severe criteria was smaller than that of the normal criteria. When the collodiaphyseal angle was 130°, the optimum relationship between A A and FA of the normal criteria and the severe criteria can be estimated by the formula: AA1 = -0.8164FA1 +41.914(r2 = 0.9988)and AA2 = -0.8028FA2 + 47.094(r2 =0.9998)respectively, and the minimum allowable inclination (IAmin) should be more than 168. 13HNR1-2.504(r2 = 0.9985)and 213.79HNR2-2.272(r2 = 0. 996)respec-tively. When the collodiaphyseal changed from 135° to 130°, the cup safe - zone moved to the area of smaller AA values, and its size got slightly smaller. Conclusion Large HNR greatly increases the size of safe -zone and it is recommended that HNR be