WorldWideScience

Sample records for accelerated similarity searching

  1. The HMMER Web Server for Protein Sequence Similarity Search.

    Science.gov (United States)

    Prakash, Ananth; Jeffryes, Matt; Bateman, Alex; Finn, Robert D

    2017-12-08

    Protein sequence similarity search is one of the most commonly used bioinformatics methods for identifying evolutionarily related proteins. In general, sequences that are evolutionarily related share some degree of similarity, and sequence-search algorithms use this principle to identify homologs. The requirement for a fast and sensitive sequence search method led to the development of the HMMER software, which in the latest version (v3.1) uses a combination of sophisticated acceleration heuristics and mathematical and computational optimizations to enable the use of profile hidden Markov models (HMMs) for sequence analysis. The HMMER Web server provides a common platform by linking the HMMER algorithms to databases, thereby enabling the search for homologs, as well as providing sequence and functional annotation by linking external databases. This unit describes three basic protocols and two alternate protocols that explain how to use the HMMER Web server using various input formats and user defined parameters. © 2017 by John Wiley & Sons, Inc. Copyright © 2017 John Wiley & Sons, Inc.

  2. Query-dependent banding (QDB for faster RNA similarity searches.

    Directory of Open Access Journals (Sweden)

    Eric P Nawrocki

    2007-03-01

    Full Text Available When searching sequence databases for RNAs, it is desirable to score both primary sequence and RNA secondary structure similarity. Covariance models (CMs are probabilistic models well-suited for RNA similarity search applications. However, the computational complexity of CM dynamic programming alignment algorithms has limited their practical application. Here we describe an acceleration method called query-dependent banding (QDB, which uses the probabilistic query CM to precalculate regions of the dynamic programming lattice that have negligible probability, independently of the target database. We have implemented QDB in the freely available Infernal software package. QDB reduces the average case time complexity of CM alignment from LN(2.4 to LN(1.3 for a query RNA of N residues and a target database of L residues, resulting in a 4-fold speedup for typical RNA queries. Combined with other improvements to Infernal, including informative mixture Dirichlet priors on model parameters, benchmarks also show increased sensitivity and specificity resulting from improved parameterization.

  3. Cloud4Psi: cloud computing for 3D protein structure similarity searching.

    Science.gov (United States)

    Mrozek, Dariusz; Małysiak-Mrozek, Bożena; Kłapciński, Artur

    2014-10-01

    Popular methods for 3D protein structure similarity searching, especially those that generate high-quality alignments such as Combinatorial Extension (CE) and Flexible structure Alignment by Chaining Aligned fragment pairs allowing Twists (FATCAT) are still time consuming. As a consequence, performing similarity searching against large repositories of structural data requires increased computational resources that are not always available. Cloud computing provides huge amounts of computational power that can be provisioned on a pay-as-you-go basis. We have developed the cloud-based system that allows scaling of the similarity searching process vertically and horizontally. Cloud4Psi (Cloud for Protein Similarity) was tested in the Microsoft Azure cloud environment and provided good, almost linearly proportional acceleration when scaled out onto many computational units. Cloud4Psi is available as Software as a Service for testing purposes at: http://cloud4psi.cloudapp.net/. For source code and software availability, please visit the Cloud4Psi project home page at http://zti.polsl.pl/dmrozek/science/cloud4psi.htm. © The Author 2014. Published by Oxford University Press.

  4. GPU Accelerated Chemical Similarity Calculation for Compound Library Comparison

    Science.gov (United States)

    Ma, Chao; Wang, Lirong; Xie, Xiang-Qun

    2012-01-01

    Chemical similarity calculation plays an important role in compound library design, virtual screening, and “lead” optimization. In this manuscript, we present a novel GPU-accelerated algorithm for all-vs-all Tanimoto matrix calculation and nearest neighbor search. By taking advantage of multi-core GPU architecture and CUDA parallel programming technology, the algorithm is up to 39 times superior to the existing commercial software that runs on CPUs. Because of the utilization of intrinsic GPU instructions, this approach is nearly 10 times faster than existing GPU-accelerated sparse vector algorithm, when Unity fingerprints are used for Tanimoto calculation. The GPU program that implements this new method takes about 20 minutes to complete the calculation of Tanimoto coefficients between 32M PubChem compounds and 10K Active Probes compounds, i.e., 324G Tanimoto coefficients, on a 128-CUDA-core GPU. PMID:21692447

  5. Accelerated Profile HMM Searches.

    Directory of Open Access Journals (Sweden)

    Sean R Eddy

    2011-10-01

    Full Text Available Profile hidden Markov models (profile HMMs and probabilistic inference methods have made important contributions to the theory of sequence database homology search. However, practical use of profile HMM methods has been hindered by the computational expense of existing software implementations. Here I describe an acceleration heuristic for profile HMMs, the "multiple segment Viterbi" (MSV algorithm. The MSV algorithm computes an optimal sum of multiple ungapped local alignment segments using a striped vector-parallel approach previously described for fast Smith/Waterman alignment. MSV scores follow the same statistical distribution as gapped optimal local alignment scores, allowing rapid evaluation of significance of an MSV score and thus facilitating its use as a heuristic filter. I also describe a 20-fold acceleration of the standard profile HMM Forward/Backward algorithms using a method I call "sparse rescaling". These methods are assembled in a pipeline in which high-scoring MSV hits are passed on for reanalysis with the full HMM Forward/Backward algorithm. This accelerated pipeline is implemented in the freely available HMMER3 software package. Performance benchmarks show that the use of the heuristic MSV filter sacrifices negligible sensitivity compared to unaccelerated profile HMM searches. HMMER3 is substantially more sensitive and 100- to 1000-fold faster than HMMER2. HMMER3 is now about as fast as BLAST for protein searches.

  6. Protein structural similarity search by Ramachandran codes

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    Chang Chih-Hung

    2007-08-01

    Full Text Available Abstract Background Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed, several methods have been designed to reduce three-dimensional protein structures to one-dimensional text strings that are then analyzed by traditional sequence alignment methods; however, the accuracy is usually sacrificed and the speed is still unable to match sequence similarity search tools. Here, we aimed to improve the linear encoding methodology and develop efficient search tools that can rapidly retrieve structural homologs from large protein databases. Results We propose a new linear encoding method, SARST (Structural similarity search Aided by Ramachandran Sequential Transformation. SARST transforms protein structures into text strings through a Ramachandran map organized by nearest-neighbor clustering and uses a regenerative approach to produce substitution matrices. Then, classical sequence similarity search methods can be applied to the structural similarity search. Its accuracy is similar to Combinatorial Extension (CE and works over 243,000 times faster, searching 34,000 proteins in 0.34 sec with a 3.2-GHz CPU. SARST provides statistically meaningful expectation values to assess the retrieved information. It has been implemented into a web service and a stand-alone Java program that is able to run on many different platforms. Conclusion As a database search method, SARST can rapidly distinguish high from low similarities and efficiently retrieve homologous structures. It demonstrates that the easily accessible linear encoding methodology has the potential to serve as a foundation for efficient protein structural similarity search tools. These search tools are supposed applicable to automated and high-throughput functional annotations or predictions for the ever increasing number of published protein structures in this post-genomic era.

  7. Search for Dark Photons with Accelerators

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    Merkel Harald

    2014-01-01

    Full Text Available A dark photon as the mediator of an interaction of the dark sector is a well motivated extension of the standard model. While possible dark matter particles are heavy and seem to be beyond the reach of current accelerators, the dark photon is not necessarily heavy and might have a mass in the range of existing accelerators. In recent years, an extensive experimental program at several accelerators for the search for dark photons were established. In this talk, recent results and progress in the determination of exclusion limits with accelerators is presented.

  8. SpolSimilaritySearch - A web tool to compare and search similarities between spoligotypes of Mycobacterium tuberculosis complex.

    Science.gov (United States)

    Couvin, David; Zozio, Thierry; Rastogi, Nalin

    2017-07-01

    Spoligotyping is one of the most commonly used polymerase chain reaction (PCR)-based methods for identification and study of genetic diversity of Mycobacterium tuberculosis complex (MTBC). Despite its known limitations if used alone, the methodology is particularly useful when used in combination with other methods such as mycobacterial interspersed repetitive units - variable number of tandem DNA repeats (MIRU-VNTRs). At a worldwide scale, spoligotyping has allowed identification of information on 103,856 MTBC isolates (corresponding to 98049 clustered strains plus 5807 unique isolates from 169 countries of patient origin) contained within the SITVIT2 proprietary database of the Institut Pasteur de la Guadeloupe. The SpolSimilaritySearch web-tool described herein (available at: http://www.pasteur-guadeloupe.fr:8081/SpolSimilaritySearch) incorporates a similarity search algorithm allowing users to get a complete overview of similar spoligotype patterns (with information on presence or absence of 43 spacers) in the aforementioned worldwide database. This tool allows one to analyze spread and evolutionary patterns of MTBC by comparing similar spoligotype patterns, to distinguish between widespread, specific and/or confined patterns, as well as to pinpoint patterns with large deleted blocks, which play an intriguing role in the genetic epidemiology of M. tuberculosis. Finally, the SpolSimilaritySearch tool also provides with the country distribution patterns for each queried spoligotype. Copyright © 2017 Elsevier Ltd. All rights reserved.

  9. SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters

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    Lefkowitz Elliot J

    2004-10-01

    Full Text Available Abstract Background Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a useful source of functional and structural information about these sequences. Using software such as the basic local alignment search tool (BLAST or HMMPFAM to identify statistically significant matches between newly sequenced segments of genetic material and those in databases is an important task for most molecular biologists. Searching algorithms are intrinsically slow and data-intensive, especially in light of the rapid growth of biological sequence databases due to the emergence of high throughput DNA sequencing techniques. Thus, traditional bioinformatics tools are impractical on PCs and even on dedicated UNIX servers. To take advantage of larger databases and more reliable methods, high performance computation becomes necessary. Results We describe the implementation of SS-Wrapper (Similarity Search Wrapper, a package of wrapper applications that can parallelize similarity search applications on a Linux cluster. Our wrapper utilizes a query segmentation-search (QS-search approach to parallelize sequence database search applications. It takes into consideration load balancing between each node on the cluster to maximize resource usage. QS-search is designed to wrap many different search tools, such as BLAST and HMMPFAM using the same interface. This implementation does not alter the original program, so newly obtained programs and program updates should be accommodated easily. Benchmark experiments using QS-search to optimize BLAST and HMMPFAM showed that QS-search accelerated the performance of these programs almost linearly in proportion to the number of CPUs used. We have also implemented a wrapper that utilizes a database segmentation approach (DS-BLAST that provides a complementary solution for BLAST searches when the database is too large to fit into

  10. SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters.

    Science.gov (United States)

    Wang, Chunlin; Lefkowitz, Elliot J

    2004-10-28

    Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a useful source of functional and structural information about these sequences. Using software such as the basic local alignment search tool (BLAST) or HMMPFAM to identify statistically significant matches between newly sequenced segments of genetic material and those in databases is an important task for most molecular biologists. Searching algorithms are intrinsically slow and data-intensive, especially in light of the rapid growth of biological sequence databases due to the emergence of high throughput DNA sequencing techniques. Thus, traditional bioinformatics tools are impractical on PCs and even on dedicated UNIX servers. To take advantage of larger databases and more reliable methods, high performance computation becomes necessary. We describe the implementation of SS-Wrapper (Similarity Search Wrapper), a package of wrapper applications that can parallelize similarity search applications on a Linux cluster. Our wrapper utilizes a query segmentation-search (QS-search) approach to parallelize sequence database search applications. It takes into consideration load balancing between each node on the cluster to maximize resource usage. QS-search is designed to wrap many different search tools, such as BLAST and HMMPFAM using the same interface. This implementation does not alter the original program, so newly obtained programs and program updates should be accommodated easily. Benchmark experiments using QS-search to optimize BLAST and HMMPFAM showed that QS-search accelerated the performance of these programs almost linearly in proportion to the number of CPUs used. We have also implemented a wrapper that utilizes a database segmentation approach (DS-BLAST) that provides a complementary solution for BLAST searches when the database is too large to fit into the memory of a single node. Used together

  11. Similarity search processing. Paralelization and indexing technologies.

    Directory of Open Access Journals (Sweden)

    Eder Dos Santos

    2015-08-01

    The next Scientific-Technical Report addresses the similarity search and the implementation of metric structures on parallel environments. It also presents the state of the art related to similarity search on metric structures and parallelism technologies. Comparative analysis are also proposed, seeking to identify the behavior of a set of metric spaces and metric structures over processing platforms multicore-based and GPU-based.

  12. The search for new accelerator techniques

    International Nuclear Information System (INIS)

    Anon.

    1982-01-01

    The European Committee for Future Accelerators, ECFA, organized a Conference from 27-30 September under the title The Challenge of Ultra-high Energies'. The aims were to discuss possible new acceleration techniques and, if possible, to help identify the most promising and encourage further research on them. Appropriately enough this search for the new took place in the dignified setting of New College Oxford. The fact that New College is many centuries old should have helped put things in perspective

  13. Expections for future neutrino searches at accelerators

    International Nuclear Information System (INIS)

    Reay, N.W.

    1995-01-01

    Anomalies in the flux of solar and atmosphere neutrinos have motivated a renaissance in the study of neutrino oscillations. Among many new experiments proposed, approved or commencing to run are several which rely on neutrino beams created at accelerators. These latter can be divided into short-baseline efforts searching at ultra-small mixing for neutrino masses in the cosmologically interesting mass range, and long-baseline efforts searching at larger mixing for oscillations in the mass range suggested by the atmosphere anomaly. A brief summary of these searches will be presented

  14. Fast business process similarity search

    NARCIS (Netherlands)

    Yan, Z.; Dijkman, R.M.; Grefen, P.W.P.J.

    2012-01-01

    Nowadays, it is common for organizations to maintain collections of hundreds or even thousands of business processes. Techniques exist to search through such a collection, for business process models that are similar to a given query model. However, those techniques compare the query model to each

  15. Using SQL Databases for Sequence Similarity Searching and Analysis.

    Science.gov (United States)

    Pearson, William R; Mackey, Aaron J

    2017-09-13

    Relational databases can integrate diverse types of information and manage large sets of similarity search results, greatly simplifying genome-scale analyses. By focusing on taxonomic subsets of sequences, relational databases can reduce the size and redundancy of sequence libraries and improve the statistical significance of homologs. In addition, by loading similarity search results into a relational database, it becomes possible to explore and summarize the relationships between all of the proteins in an organism and those in other biological kingdoms. This unit describes how to use relational databases to improve the efficiency of sequence similarity searching and demonstrates various large-scale genomic analyses of homology-related data. It also describes the installation and use of a simple protein sequence database, seqdb_demo, which is used as a basis for the other protocols. The unit also introduces search_demo, a database that stores sequence similarity search results. The search_demo database is then used to explore the evolutionary relationships between E. coli proteins and proteins in other organisms in a large-scale comparative genomic analysis. © 2017 by John Wiley & Sons, Inc. Copyright © 2017 John Wiley & Sons, Inc.

  16. Predicting the performance of fingerprint similarity searching.

    Science.gov (United States)

    Vogt, Martin; Bajorath, Jürgen

    2011-01-01

    Fingerprints are bit string representations of molecular structure that typically encode structural fragments, topological features, or pharmacophore patterns. Various fingerprint designs are utilized in virtual screening and their search performance essentially depends on three parameters: the nature of the fingerprint, the active compounds serving as reference molecules, and the composition of the screening database. It is of considerable interest and practical relevance to predict the performance of fingerprint similarity searching. A quantitative assessment of the potential that a fingerprint search might successfully retrieve active compounds, if available in the screening database, would substantially help to select the type of fingerprint most suitable for a given search problem. The method presented herein utilizes concepts from information theory to relate the fingerprint feature distributions of reference compounds to screening libraries. If these feature distributions do not sufficiently differ, active database compounds that are similar to reference molecules cannot be retrieved because they disappear in the "background." By quantifying the difference in feature distribution using the Kullback-Leibler divergence and relating the divergence to compound recovery rates obtained for different benchmark classes, fingerprint search performance can be quantitatively predicted.

  17. BLAST and FASTA similarity searching for multiple sequence alignment.

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    Pearson, William R

    2014-01-01

    BLAST, FASTA, and other similarity searching programs seek to identify homologous proteins and DNA sequences based on excess sequence similarity. If two sequences share much more similarity than expected by chance, the simplest explanation for the excess similarity is common ancestry-homology. The most effective similarity searches compare protein sequences, rather than DNA sequences, for sequences that encode proteins, and use expectation values, rather than percent identity, to infer homology. The BLAST and FASTA packages of sequence comparison programs provide programs for comparing protein and DNA sequences to protein databases (the most sensitive searches). Protein and translated-DNA comparisons to protein databases routinely allow evolutionary look back times from 1 to 2 billion years; DNA:DNA searches are 5-10-fold less sensitive. BLAST and FASTA can be run on popular web sites, but can also be downloaded and installed on local computers. With local installation, target databases can be customized for the sequence data being characterized. With today's very large protein databases, search sensitivity can also be improved by searching smaller comprehensive databases, for example, a complete protein set from an evolutionarily neighboring model organism. By default, BLAST and FASTA use scoring strategies target for distant evolutionary relationships; for comparisons involving short domains or queries, or searches that seek relatively close homologs (e.g. mouse-human), shallower scoring matrices will be more effective. Both BLAST and FASTA provide very accurate statistical estimates, which can be used to reliably identify protein sequences that diverged more than 2 billion years ago.

  18. Accelerated Simplified Swarm Optimization with Exploitation Search Scheme for Data Clustering.

    Directory of Open Access Journals (Sweden)

    Wei-Chang Yeh

    Full Text Available Data clustering is commonly employed in many disciplines. The aim of clustering is to partition a set of data into clusters, in which objects within the same cluster are similar and dissimilar to other objects that belong to different clusters. Over the past decade, the evolutionary algorithm has been commonly used to solve clustering problems. This study presents a novel algorithm based on simplified swarm optimization, an emerging population-based stochastic optimization approach with the advantages of simplicity, efficiency, and flexibility. This approach combines variable vibrating search (VVS and rapid centralized strategy (RCS in dealing with clustering problem. VVS is an exploitation search scheme that can refine the quality of solutions by searching the extreme points nearby the global best position. RCS is developed to accelerate the convergence rate of the algorithm by using the arithmetic average. To empirically evaluate the performance of the proposed algorithm, experiments are examined using 12 benchmark datasets, and corresponding results are compared with recent works. Results of statistical analysis indicate that the proposed algorithm is competitive in terms of the quality of solutions.

  19. Improving GPU-accelerated adaptive IDW interpolation algorithm using fast kNN search.

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    Mei, Gang; Xu, Nengxiong; Xu, Liangliang

    2016-01-01

    This paper presents an efficient parallel Adaptive Inverse Distance Weighting (AIDW) interpolation algorithm on modern Graphics Processing Unit (GPU). The presented algorithm is an improvement of our previous GPU-accelerated AIDW algorithm by adopting fast k-nearest neighbors (kNN) search. In AIDW, it needs to find several nearest neighboring data points for each interpolated point to adaptively determine the power parameter; and then the desired prediction value of the interpolated point is obtained by weighted interpolating using the power parameter. In this work, we develop a fast kNN search approach based on the space-partitioning data structure, even grid, to improve the previous GPU-accelerated AIDW algorithm. The improved algorithm is composed of the stages of kNN search and weighted interpolating. To evaluate the performance of the improved algorithm, we perform five groups of experimental tests. The experimental results indicate: (1) the improved algorithm can achieve a speedup of up to 1017 over the corresponding serial algorithm; (2) the improved algorithm is at least two times faster than our previous GPU-accelerated AIDW algorithm; and (3) the utilization of fast kNN search can significantly improve the computational efficiency of the entire GPU-accelerated AIDW algorithm.

  20. Similarity search of business process models

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    Dumas, M.; García-Bañuelos, L.; Dijkman, R.M.

    2009-01-01

    Similarity search is a general class of problems in which a given object, called a query object, is compared against a collection of objects in order to retrieve those that most closely resemble the query object. This paper reviews recent work on an instance of this class of problems, where the

  1. Target-nontarget similarity decreases search efficiency and increases stimulus-driven control in visual search.

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    Barras, Caroline; Kerzel, Dirk

    2017-10-01

    Some points of criticism against the idea that attentional selection is controlled by bottom-up processing were dispelled by the attentional window account. The attentional window account claims that saliency computations during visual search are only performed for stimuli inside the attentional window. Therefore, a small attentional window may avoid attentional capture by salient distractors because it is likely that the salient distractor is located outside the window. In contrast, a large attentional window increases the chances of attentional capture by a salient distractor. Large and small attentional windows have been associated with efficient (parallel) and inefficient (serial) search, respectively. We compared the effect of a salient color singleton on visual search for a shape singleton during efficient and inefficient search. To vary search efficiency, the nontarget shapes were either similar or dissimilar with respect to the shape singleton. We found that interference from the color singleton was larger with inefficient than efficient search, which contradicts the attentional window account. While inconsistent with the attentional window account, our results are predicted by computational models of visual search. Because of target-nontarget similarity, the target was less salient with inefficient than efficient search. Consequently, the relative saliency of the color distractor was higher with inefficient than with efficient search. Accordingly, stronger attentional capture resulted. Overall, the present results show that bottom-up control by stimulus saliency is stronger when search is difficult, which is inconsistent with the attentional window account.

  2. Astrophysical search strategies for accelerator blind dark matter

    International Nuclear Information System (INIS)

    Wells, J.D.

    1998-04-01

    A weakly interacting dark matter particle may be very difficult to discover at an accelerator because it either (1) is too heavy, (2) has no standard model gauge interactions, or (3) is almost degenerate with other states. In each of these cases, searches for annihilation products in the galactic halo are useful probes of dark matter properties. Using the example of supersymmetric dark matter, the author demonstrates how astrophysical searches for dark matter may provide discovery and mass information inaccessible to collider physics programs such as the Tevatron and LHC

  3. The physics of particle acceleration and the search for new ideas

    International Nuclear Information System (INIS)

    Lawson, J.D.

    1988-06-01

    In recent years there has been an intensive search for 'new ideas' to enable the energy range of accelerators to be increased beyond that attainable with existing techniques. Some comment is made on these ideas, but before this is done, a general discussion of accelerating mechanisms is presented. (author)

  4. Similarity-based search of model organism, disease and drug effect phenotypes

    KAUST Repository

    Hoehndorf, Robert

    2015-02-19

    Background: Semantic similarity measures over phenotype ontologies have been demonstrated to provide a powerful approach for the analysis of model organism phenotypes, the discovery of animal models of human disease, novel pathways, gene functions, druggable therapeutic targets, and determination of pathogenicity. Results: We have developed PhenomeNET 2, a system that enables similarity-based searches over a large repository of phenotypes in real-time. It can be used to identify strains of model organisms that are phenotypically similar to human patients, diseases that are phenotypically similar to model organism phenotypes, or drug effect profiles that are similar to the phenotypes observed in a patient or model organism. PhenomeNET 2 is available at http://aber-owl.net/phenomenet. Conclusions: Phenotype-similarity searches can provide a powerful tool for the discovery and investigation of molecular mechanisms underlying an observed phenotypic manifestation. PhenomeNET 2 facilitates user-defined similarity searches and allows researchers to analyze their data within a large repository of human, mouse and rat phenotypes.

  5. MEASURING THE PERFORMANCE OF SIMILARITY PROPAGATION IN AN SEMANTIC SEARCH ENGINE

    Directory of Open Access Journals (Sweden)

    S. K. Jayanthi

    2013-10-01

    Full Text Available In the current scenario, web page result personalization is playing a vital role. Nearly 80 % of the users expect the best results in the first page itself without having any persistence to browse longer in URL mode. This research work focuses on two main themes: Semantic web search through online and Domain based search through offline. The first part is to find an effective method which allows grouping similar results together using BookShelf Data Structure and organizing the various clusters. The second one is focused on the academic domain based search through offline. This paper focuses on finding documents which are similar and how Vector space can be used to solve it. So more weightage is given for the principles and working methodology of similarity propagation. Cosine similarity measure is used for finding the relevancy among the documents.

  6. Searching for oscillations of atmospheric and accelerator neutrinos with GeNIUS

    International Nuclear Information System (INIS)

    Michael, Douglas G.

    1994-01-01

    A very large (17KT) fine-grained sampling calorimeter is discussed for use in studying contained events induced by atmospheric or accelerator neutrinos for the purpose of searching for neutrino oscillations. The ratio of neutral current to charged current events can be used to rule out a large region of the currently allowed parameter space with accelerator and atmospheric neutrinos providing complimentary measurements. ((orig.))

  7. Accelerating Neuroimage Registration through Parallel Computation of Similarity Metric.

    Directory of Open Access Journals (Sweden)

    Yun-Gang Luo

    Full Text Available Neuroimage registration is crucial for brain morphometric analysis and treatment efficacy evaluation. However, existing advanced registration algorithms such as FLIRT and ANTs are not efficient enough for clinical use. In this paper, a GPU implementation of FLIRT with the correlation ratio (CR as the similarity metric and a GPU accelerated correlation coefficient (CC calculation for the symmetric diffeomorphic registration of ANTs have been developed. The comparison with their corresponding original tools shows that our accelerated algorithms can greatly outperform the original algorithm in terms of computational efficiency. This paper demonstrates the great potential of applying these registration tools in clinical applications.

  8. Combined semantic and similarity search in medical image databases

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    Seifert, Sascha; Thoma, Marisa; Stegmaier, Florian; Hammon, Matthias; Kramer, Martin; Huber, Martin; Kriegel, Hans-Peter; Cavallaro, Alexander; Comaniciu, Dorin

    2011-03-01

    The current diagnostic process at hospitals is mainly based on reviewing and comparing images coming from multiple time points and modalities in order to monitor disease progression over a period of time. However, for ambiguous cases the radiologist deeply relies on reference literature or second opinion. Although there is a vast amount of acquired images stored in PACS systems which could be reused for decision support, these data sets suffer from weak search capabilities. Thus, we present a search methodology which enables the physician to fulfill intelligent search scenarios on medical image databases combining ontology-based semantic and appearance-based similarity search. It enabled the elimination of 12% of the top ten hits which would arise without taking the semantic context into account.

  9. Towards novel organic high-Tc superconductors: Data mining using density of states similarity search

    Science.gov (United States)

    Geilhufe, R. Matthias; Borysov, Stanislav S.; Kalpakchi, Dmytro; Balatsky, Alexander V.

    2018-02-01

    Identifying novel functional materials with desired key properties is an important part of bridging the gap between fundamental research and technological advancement. In this context, high-throughput calculations combined with data-mining techniques highly accelerated this process in different areas of research during the past years. The strength of a data-driven approach for materials prediction lies in narrowing down the search space of thousands of materials to a subset of prospective candidates. Recently, the open-access organic materials database OMDB was released providing electronic structure data for thousands of previously synthesized three-dimensional organic crystals. Based on the OMDB, we report about the implementation of a novel density of states similarity search tool which is capable of retrieving materials with similar density of states to a reference material. The tool is based on the approximate nearest neighbor algorithm as implemented in the ANNOY library and can be applied via the OMDB web interface. The approach presented here is wide ranging and can be applied to various problems where the density of states is responsible for certain key properties of a material. As the first application, we report about materials exhibiting electronic structure similarities to the aromatic hydrocarbon p-terphenyl which was recently discussed as a potential organic high-temperature superconductor exhibiting a transition temperature in the order of 120 K under strong potassium doping. Although the mechanism driving the remarkable transition temperature remains under debate, we argue that the density of states, reflecting the electronic structure of a material, might serve as a crucial ingredient for the observed high Tc. To provide candidates which might exhibit comparable properties, we present 15 purely organic materials with similar features to p-terphenyl within the electronic structure, which also tend to have structural similarities with p

  10. Inference-Based Similarity Search in Randomized Montgomery Domains for Privacy-Preserving Biometric Identification.

    Science.gov (United States)

    Wang, Yi; Wan, Jianwu; Guo, Jun; Cheung, Yiu-Ming; C Yuen, Pong

    2017-07-14

    Similarity search is essential to many important applications and often involves searching at scale on high-dimensional data based on their similarity to a query. In biometric applications, recent vulnerability studies have shown that adversarial machine learning can compromise biometric recognition systems by exploiting the biometric similarity information. Existing methods for biometric privacy protection are in general based on pairwise matching of secured biometric templates and have inherent limitations in search efficiency and scalability. In this paper, we propose an inference-based framework for privacy-preserving similarity search in Hamming space. Our approach builds on an obfuscated distance measure that can conceal Hamming distance in a dynamic interval. Such a mechanism enables us to systematically design statistically reliable methods for retrieving most likely candidates without knowing the exact distance values. We further propose to apply Montgomery multiplication for generating search indexes that can withstand adversarial similarity analysis, and show that information leakage in randomized Montgomery domains can be made negligibly small. Our experiments on public biometric datasets demonstrate that the inference-based approach can achieve a search accuracy close to the best performance possible with secure computation methods, but the associated cost is reduced by orders of magnitude compared to cryptographic primitives.

  11. δ-Similar Elimination to Enhance Search Performance of Multiobjective Evolutionary Algorithms

    Science.gov (United States)

    Aguirre, Hernán; Sato, Masahiko; Tanaka, Kiyoshi

    In this paper, we propose δ-similar elimination to improve the search performance of multiobjective evolutionary algorithms in combinatorial optimization problems. This method eliminates similar individuals in objective space to fairly distribute selection among the different regions of the instantaneous Pareto front. We investigate four eliminating methods analyzing their effects using NSGA-II. In addition, we compare the search performance of NSGA-II enhanced by our method and NSGA-II enhanced by controlled elitism.

  12. Similarity relations in visual search predict rapid visual categorization

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    Mohan, Krithika; Arun, S. P.

    2012-01-01

    How do we perform rapid visual categorization?It is widely thought that categorization involves evaluating the similarity of an object to other category items, but the underlying features and similarity relations remain unknown. Here, we hypothesized that categorization performance is based on perceived similarity relations between items within and outside the category. To this end, we measured the categorization performance of human subjects on three diverse visual categories (animals, vehicles, and tools) and across three hierarchical levels (superordinate, basic, and subordinate levels among animals). For the same subjects, we measured their perceived pair-wise similarities between objects using a visual search task. Regardless of category and hierarchical level, we found that the time taken to categorize an object could be predicted using its similarity to members within and outside its category. We were able to account for several classic categorization phenomena, such as (a) the longer times required to reject category membership; (b) the longer times to categorize atypical objects; and (c) differences in performance across tasks and across hierarchical levels. These categorization times were also accounted for by a model that extracts coarse structure from an image. The striking agreement observed between categorization and visual search suggests that these two disparate tasks depend on a shared coarse object representation. PMID:23092947

  13. Accelerator-based neutrino oscillation searches

    International Nuclear Information System (INIS)

    Whitehouse, D.A.; Rameika, R.; Stanton, N.

    1993-01-01

    This paper attempts to summarize the neutrino oscillation section of the Workshop on Future Directions in Particle and Nuclear Physics at Multi-GeV Hadron Beam Facilities. There were very lively discussions about the merits of the different oscillation channels, experiments, and facilities, but we believe a substantial consensus emerged. First, the next decade is one of great potential for discovery in neutrino physics, but it is also one of great peril. The possibility that neutrino oscillations explain the solar neutrino and atmospheric neutrino experiments, and the indirect evidence that Hot Dark Matter (HDM) in the form of light neutrinos might make up 30% of the mass of the universe, point to areas where accelerator-based experiments could play a crucial role in piecing together the puzzle. At the same time, the field faces a very uncertain future. The LSND experiment at LAMPF is the only funded neutrino oscillation experiment in the United States and it is threatened by the abrupt shutdown of LAMPF proposed for fiscal 1994. The future of neutrino physics at the Brookhaven National Laboratory AGS depends the continuation of High Energy Physics (HEP) funding after the RHIC startup. Most proposed neutrino oscillation searches at Fermilab depend on the completion of the Main Injector project and on the construction of a new neutrino beamline, which is uncertain at this point. The proposed KAON facility at TRIUMF would provide a neutrino beam similar to that at the AGS but with a much increase intensity. The future of KAON is also uncertain. Despite the difficult obstacles present, there is a real possibility that we are on the verge of understanding the masses and mixings of the neutrinos. The physics importance of such a discovery can not be overstated. The current experimental status and future possibilities are discussed below

  14. Using relational databases for improved sequence similarity searching and large-scale genomic analyses.

    Science.gov (United States)

    Mackey, Aaron J; Pearson, William R

    2004-10-01

    Relational databases are designed to integrate diverse types of information and manage large sets of search results, greatly simplifying genome-scale analyses. Relational databases are essential for management and analysis of large-scale sequence analyses, and can also be used to improve the statistical significance of similarity searches by focusing on subsets of sequence libraries most likely to contain homologs. This unit describes using relational databases to improve the efficiency of sequence similarity searching and to demonstrate various large-scale genomic analyses of homology-related data. This unit describes the installation and use of a simple protein sequence database, seqdb_demo, which is used as a basis for the other protocols. These include basic use of the database to generate a novel sequence library subset, how to extend and use seqdb_demo for the storage of sequence similarity search results and making use of various kinds of stored search results to address aspects of comparative genomic analysis.

  15. Retrospective group fusion similarity search based on eROCE evaluation metric.

    Science.gov (United States)

    Avram, Sorin I; Crisan, Luminita; Bora, Alina; Pacureanu, Liliana M; Avram, Stefana; Kurunczi, Ludovic

    2013-03-01

    In this study, a simple evaluation metric, denoted as eROCE was proposed to measure the early enrichment of predictive methods. We demonstrated the superior robustness of eROCE compared to other known metrics throughout several active to inactive ratios ranging from 1:10 to 1:1000. Group fusion similarity search was investigated by varying 16 similarity coefficients, five molecular representations (binary and non-binary) and two group fusion rules using two reference structure set sizes. We used a dataset of 3478 actives and 43,938 inactive molecules and the enrichment was analyzed by means of eROCE. This retrospective study provides optimal similarity search parameters in the case of ALDH1A1 inhibitors. Copyright © 2013 Elsevier Ltd. All rights reserved.

  16. How Google Web Search copes with very similar documents

    NARCIS (Netherlands)

    W. Mettrop (Wouter); P. Nieuwenhuysen; H. Smulders

    2006-01-01

    textabstractA significant portion of the computer files that carry documents, multimedia, programs etc. on the Web are identical or very similar to other files on the Web. How do search engines cope with this? Do they perform some kind of “deduplication”? How should users take into account that

  17. OS2: Oblivious similarity based searching for encrypted data outsourced to an untrusted domain

    Science.gov (United States)

    Pervez, Zeeshan; Ahmad, Mahmood; Khattak, Asad Masood; Ramzan, Naeem

    2017-01-01

    Public cloud storage services are becoming prevalent and myriad data sharing, archiving and collaborative services have emerged which harness the pay-as-you-go business model of public cloud. To ensure privacy and confidentiality often encrypted data is outsourced to such services, which further complicates the process of accessing relevant data by using search queries. Search over encrypted data schemes solve this problem by exploiting cryptographic primitives and secure indexing to identify outsourced data that satisfy the search criteria. Almost all of these schemes rely on exact matching between the encrypted data and search criteria. A few schemes which extend the notion of exact matching to similarity based search, lack realism as those schemes rely on trusted third parties or due to increase storage and computational complexity. In this paper we propose Oblivious Similarity based Search (OS2) for encrypted data. It enables authorized users to model their own encrypted search queries which are resilient to typographical errors. Unlike conventional methodologies, OS2 ranks the search results by using similarity measure offering a better search experience than exact matching. It utilizes encrypted bloom filter and probabilistic homomorphic encryption to enable authorized users to access relevant data without revealing results of search query evaluation process to the untrusted cloud service provider. Encrypted bloom filter based search enables OS2 to reduce search space to potentially relevant encrypted data avoiding unnecessary computation on public cloud. The efficacy of OS2 is evaluated on Google App Engine for various bloom filter lengths on different cloud configurations. PMID:28692697

  18. Similarity searching and scaffold hopping in synthetically accessible combinatorial chemistry spaces.

    Science.gov (United States)

    Boehm, Markus; Wu, Tong-Ying; Claussen, Holger; Lemmen, Christian

    2008-04-24

    Large collections of combinatorial libraries are an integral element in today's pharmaceutical industry. It is of great interest to perform similarity searches against all virtual compounds that are synthetically accessible by any such library. Here we describe the successful application of a new software tool CoLibri on 358 combinatorial libraries based on validated reaction protocols to create a single chemistry space containing over 10 (12) possible products. Similarity searching with FTrees-FS allows the systematic exploration of this space without the need to enumerate all product structures. The search result is a set of virtual hits which are synthetically accessible by one or more of the existing reaction protocols. Grouping these virtual hits by their synthetic protocols allows the rapid design and synthesis of multiple follow-up libraries. Such library ideas support hit-to-lead design efforts for tasks like follow-up from high-throughput screening hits or scaffold hopping from one hit to another attractive series.

  19. Acceleration of saddle-point searches with machine learning

    Energy Technology Data Exchange (ETDEWEB)

    Peterson, Andrew A., E-mail: andrew-peterson@brown.edu [School of Engineering, Brown University, Providence, Rhode Island 02912 (United States)

    2016-08-21

    In atomistic simulations, the location of the saddle point on the potential-energy surface (PES) gives important information on transitions between local minima, for example, via transition-state theory. However, the search for saddle points often involves hundreds or thousands of ab initio force calls, which are typically all done at full accuracy. This results in the vast majority of the computational effort being spent calculating the electronic structure of states not important to the researcher, and very little time performing the calculation of the saddle point state itself. In this work, we describe how machine learning (ML) can reduce the number of intermediate ab initio calculations needed to locate saddle points. Since machine-learning models can learn from, and thus mimic, atomistic simulations, the saddle-point search can be conducted rapidly in the machine-learning representation. The saddle-point prediction can then be verified by an ab initio calculation; if it is incorrect, this strategically has identified regions of the PES where the machine-learning representation has insufficient training data. When these training data are used to improve the machine-learning model, the estimates greatly improve. This approach can be systematized, and in two simple example problems we demonstrate a dramatic reduction in the number of ab initio force calls. We expect that this approach and future refinements will greatly accelerate searches for saddle points, as well as other searches on the potential energy surface, as machine-learning methods see greater adoption by the atomistics community.

  20. Acceleration of saddle-point searches with machine learning

    International Nuclear Information System (INIS)

    Peterson, Andrew A.

    2016-01-01

    In atomistic simulations, the location of the saddle point on the potential-energy surface (PES) gives important information on transitions between local minima, for example, via transition-state theory. However, the search for saddle points often involves hundreds or thousands of ab initio force calls, which are typically all done at full accuracy. This results in the vast majority of the computational effort being spent calculating the electronic structure of states not important to the researcher, and very little time performing the calculation of the saddle point state itself. In this work, we describe how machine learning (ML) can reduce the number of intermediate ab initio calculations needed to locate saddle points. Since machine-learning models can learn from, and thus mimic, atomistic simulations, the saddle-point search can be conducted rapidly in the machine-learning representation. The saddle-point prediction can then be verified by an ab initio calculation; if it is incorrect, this strategically has identified regions of the PES where the machine-learning representation has insufficient training data. When these training data are used to improve the machine-learning model, the estimates greatly improve. This approach can be systematized, and in two simple example problems we demonstrate a dramatic reduction in the number of ab initio force calls. We expect that this approach and future refinements will greatly accelerate searches for saddle points, as well as other searches on the potential energy surface, as machine-learning methods see greater adoption by the atomistics community.

  1. Acceleration of saddle-point searches with machine learning.

    Science.gov (United States)

    Peterson, Andrew A

    2016-08-21

    In atomistic simulations, the location of the saddle point on the potential-energy surface (PES) gives important information on transitions between local minima, for example, via transition-state theory. However, the search for saddle points often involves hundreds or thousands of ab initio force calls, which are typically all done at full accuracy. This results in the vast majority of the computational effort being spent calculating the electronic structure of states not important to the researcher, and very little time performing the calculation of the saddle point state itself. In this work, we describe how machine learning (ML) can reduce the number of intermediate ab initio calculations needed to locate saddle points. Since machine-learning models can learn from, and thus mimic, atomistic simulations, the saddle-point search can be conducted rapidly in the machine-learning representation. The saddle-point prediction can then be verified by an ab initio calculation; if it is incorrect, this strategically has identified regions of the PES where the machine-learning representation has insufficient training data. When these training data are used to improve the machine-learning model, the estimates greatly improve. This approach can be systematized, and in two simple example problems we demonstrate a dramatic reduction in the number of ab initio force calls. We expect that this approach and future refinements will greatly accelerate searches for saddle points, as well as other searches on the potential energy surface, as machine-learning methods see greater adoption by the atomistics community.

  2. Optimal neighborhood indexing for protein similarity search.

    Science.gov (United States)

    Peterlongo, Pierre; Noé, Laurent; Lavenier, Dominique; Nguyen, Van Hoa; Kucherov, Gregory; Giraud, Mathieu

    2008-12-16

    Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data flow involves heuristics with large seed indexes. In order to speed up this technique, the index can be enhanced by storing additional information to limit the number of random memory accesses. However, this improvement leads to a larger index that may become a bottleneck. In the case of protein similarity search, we propose to decrease the index size by reducing the amino acid alphabet. The paper presents two main contributions. First, we show that an optimal neighborhood indexing combining an alphabet reduction and a longer neighborhood leads to a reduction of 35% of memory involved into the process, without sacrificing the quality of results nor the computational time. Second, our approach led us to develop a new kind of substitution score matrices and their associated e-value parameters. In contrast to usual matrices, these matrices are rectangular since they compare amino acid groups from different alphabets. We describe the method used for computing those matrices and we provide some typical examples that can be used in such comparisons. Supplementary data can be found on the website http://bioinfo.lifl.fr/reblosum. We propose a practical index size reduction of the neighborhood data, that does not negatively affect the performance of large-scale search in protein sequences. Such an index can be used in any study involving large protein data. Moreover, rectangular substitution score matrices and their associated statistical parameters can have applications in any study involving an alphabet reduction.

  3. Optimal neighborhood indexing for protein similarity search

    Directory of Open Access Journals (Sweden)

    Nguyen Van

    2008-12-01

    Full Text Available Abstract Background Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data flow involves heuristics with large seed indexes. In order to speed up this technique, the index can be enhanced by storing additional information to limit the number of random memory accesses. However, this improvement leads to a larger index that may become a bottleneck. In the case of protein similarity search, we propose to decrease the index size by reducing the amino acid alphabet. Results The paper presents two main contributions. First, we show that an optimal neighborhood indexing combining an alphabet reduction and a longer neighborhood leads to a reduction of 35% of memory involved into the process, without sacrificing the quality of results nor the computational time. Second, our approach led us to develop a new kind of substitution score matrices and their associated e-value parameters. In contrast to usual matrices, these matrices are rectangular since they compare amino acid groups from different alphabets. We describe the method used for computing those matrices and we provide some typical examples that can be used in such comparisons. Supplementary data can be found on the website http://bioinfo.lifl.fr/reblosum. Conclusion We propose a practical index size reduction of the neighborhood data, that does not negatively affect the performance of large-scale search in protein sequences. Such an index can be used in any study involving large protein data. Moreover, rectangular substitution score matrices and their associated statistical parameters can have applications in any study involving an alphabet reduction.

  4. [Formula: see text]: Oblivious similarity based searching for encrypted data outsourced to an untrusted domain.

    Science.gov (United States)

    Pervez, Zeeshan; Ahmad, Mahmood; Khattak, Asad Masood; Ramzan, Naeem; Khan, Wajahat Ali

    2017-01-01

    Public cloud storage services are becoming prevalent and myriad data sharing, archiving and collaborative services have emerged which harness the pay-as-you-go business model of public cloud. To ensure privacy and confidentiality often encrypted data is outsourced to such services, which further complicates the process of accessing relevant data by using search queries. Search over encrypted data schemes solve this problem by exploiting cryptographic primitives and secure indexing to identify outsourced data that satisfy the search criteria. Almost all of these schemes rely on exact matching between the encrypted data and search criteria. A few schemes which extend the notion of exact matching to similarity based search, lack realism as those schemes rely on trusted third parties or due to increase storage and computational complexity. In this paper we propose Oblivious Similarity based Search ([Formula: see text]) for encrypted data. It enables authorized users to model their own encrypted search queries which are resilient to typographical errors. Unlike conventional methodologies, [Formula: see text] ranks the search results by using similarity measure offering a better search experience than exact matching. It utilizes encrypted bloom filter and probabilistic homomorphic encryption to enable authorized users to access relevant data without revealing results of search query evaluation process to the untrusted cloud service provider. Encrypted bloom filter based search enables [Formula: see text] to reduce search space to potentially relevant encrypted data avoiding unnecessary computation on public cloud. The efficacy of [Formula: see text] is evaluated on Google App Engine for various bloom filter lengths on different cloud configurations.

  5. SHOP: scaffold hopping by GRID-based similarity searches

    DEFF Research Database (Denmark)

    Bergmann, Rikke; Linusson, Anna; Zamora, Ismael

    2007-01-01

    A new GRID-based method for scaffold hopping (SHOP) is presented. In a fully automatic manner, scaffolds were identified in a database based on three types of 3D-descriptors. SHOP's ability to recover scaffolds was assessed and validated by searching a database spiked with fragments of known...... scaffolds were in the 31 top-ranked scaffolds. SHOP also identified new scaffolds with substantially different chemotypes from the queries. Docking analysis indicated that the new scaffolds would have similar binding modes to those of the respective query scaffolds observed in X-ray structures...

  6. Semantic similarity measure in biomedical domain leverage web search engine.

    Science.gov (United States)

    Chen, Chi-Huang; Hsieh, Sheau-Ling; Weng, Yung-Ching; Chang, Wen-Yung; Lai, Feipei

    2010-01-01

    Semantic similarity measure plays an essential role in Information Retrieval and Natural Language Processing. In this paper we propose a page-count-based semantic similarity measure and apply it in biomedical domains. Previous researches in semantic web related applications have deployed various semantic similarity measures. Despite the usefulness of the measurements in those applications, measuring semantic similarity between two terms remains a challenge task. The proposed method exploits page counts returned by the Web Search Engine. We define various similarity scores for two given terms P and Q, using the page counts for querying P, Q and P AND Q. Moreover, we propose a novel approach to compute semantic similarity using lexico-syntactic patterns with page counts. These different similarity scores are integrated adapting support vector machines, to leverage the robustness of semantic similarity measures. Experimental results on two datasets achieve correlation coefficients of 0.798 on the dataset provided by A. Hliaoutakis, 0.705 on the dataset provide by T. Pedersen with physician scores and 0.496 on the dataset provided by T. Pedersen et al. with expert scores.

  7. Generating "fragment-based virtual library" using pocket similarity search of ligand-receptor complexes.

    Science.gov (United States)

    Khashan, Raed S

    2015-01-01

    As the number of available ligand-receptor complexes is increasing, researchers are becoming more dedicated to mine these complexes to aid in the drug design and development process. We present free software which is developed as a tool for performing similarity search across ligand-receptor complexes for identifying binding pockets which are similar to that of a target receptor. The search is based on 3D-geometric and chemical similarity of the atoms forming the binding pocket. For each match identified, the ligand's fragment(s) corresponding to that binding pocket are extracted, thus forming a virtual library of fragments (FragVLib) that is useful for structure-based drug design. The program provides a very useful tool to explore available databases.

  8. BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server

    Directory of Open Access Journals (Sweden)

    Jiang Hualiang

    2010-01-01

    Full Text Available Abstract Background Genome sequencing and post-genomics projects such as structural genomics are extending the frontier of the study of sequence-structure-function relationship of genes and their products. Although many sequence/structure-based methods have been devised with the aim of deciphering this delicate relationship, there still remain large gaps in this fundamental problem, which continuously drives researchers to develop novel methods to extract relevant information from sequences and structures and to infer the functions of newly identified genes by genomics technology. Results Here we present an ultrafast method, named BSSF(Binding Site Similarity & Function, which enables researchers to conduct similarity searches in a comprehensive three-dimensional binding site database extracted from PDB structures. This method utilizes a fingerprint representation of the binding site and a validated statistical Z-score function scheme to judge the similarity between the query and database items, even if their similarities are only constrained in a sub-pocket. This fingerprint based similarity measurement was also validated on a known binding site dataset by comparing with geometric hashing, which is a standard 3D similarity method. The comparison clearly demonstrated the utility of this ultrafast method. After conducting the database searching, the hit list is further analyzed to provide basic statistical information about the occurrences of Gene Ontology terms and Enzyme Commission numbers, which may benefit researchers by helping them to design further experiments to study the query proteins. Conclusions This ultrafast web-based system will not only help researchers interested in drug design and structural genomics to identify similar binding sites, but also assist them by providing further analysis of hit list from database searching.

  9. Efficient blind search for similar-waveform earthquakes in years of continuous seismic data

    Science.gov (United States)

    Yoon, C. E.; Bergen, K.; Rong, K.; Elezabi, H.; Bailis, P.; Levis, P.; Beroza, G. C.

    2017-12-01

    Cross-correlating an earthquake waveform template with continuous seismic data has proven to be a sensitive, discriminating detector of small events missing from earthquake catalogs, but a key limitation of this approach is that it requires advance knowledge of the earthquake signals we wish to detect. To overcome this limitation, we can perform a blind search for events with similar waveforms, comparing waveforms from all possible times within the continuous data (Brown et al., 2008). However, the runtime for naive blind search scales quadratically with the duration of continuous data, making it impractical to process years of continuous data. The Fingerprint And Similarity Thresholding (FAST) detection method (Yoon et al., 2015) enables a comprehensive blind search for similar-waveform earthquakes in a fast, scalable manner by adapting data-mining techniques originally developed for audio and image search within massive databases. FAST converts seismic waveforms into compact "fingerprints", which are efficiently organized and searched within a database. In this way, FAST avoids the unnecessary comparison of dissimilar waveforms. To date, the longest duration of continuous data used for event detection with FAST was 3 months at a single station near Guy-Greenbrier, Arkansas, which revealed microearthquakes closely correlated with stages of hydraulic fracturing (Yoon et al., 2017). In this presentation we introduce an optimized, parallel version of the FAST software with improvements to the fingerprinting algorithm and the ability to detect events using continuous data from a network of stations (Bergen et al., 2016). We demonstrate its ability to detect low-magnitude earthquakes within several years of continuous data at locations of interest in California.

  10. GPU-Accelerated Text Mining

    International Nuclear Information System (INIS)

    Cui, X.; Mueller, F.; Zhang, Y.; Potok, Thomas E.

    2009-01-01

    Accelerating hardware devices represent a novel promise for improving the performance for many problem domains but it is not clear for which domains what accelerators are suitable. While there is no room in general-purpose processor design to significantly increase the processor frequency, developers are instead resorting to multi-core chips duplicating conventional computing capabilities on a single die. Yet, accelerators offer more radical designs with a much higher level of parallelism and novel programming environments. This present work assesses the viability of text mining on CUDA. Text mining is one of the key concepts that has become prominent as an effective means to index the Internet, but its applications range beyond this scope and extend to providing document similarity metrics, the subject of this work. We have developed and optimized text search algorithms for GPUs to exploit their potential for massive data processing. We discuss the algorithmic challenges of parallelization for text search problems on GPUs and demonstrate the potential of these devices in experiments by reporting significant speedups. Our study may be one of the first to assess more complex text search problems for suitability for GPU devices, and it may also be one of the first to exploit and report on atomic instruction usage that have recently become available in NVIDIA devices

  11. Fast parallel tandem mass spectral library searching using GPU hardware acceleration.

    Science.gov (United States)

    Baumgardner, Lydia Ashleigh; Shanmugam, Avinash Kumar; Lam, Henry; Eng, Jimmy K; Martin, Daniel B

    2011-06-03

    Mass spectrometry-based proteomics is a maturing discipline of biologic research that is experiencing substantial growth. Instrumentation has steadily improved over time with the advent of faster and more sensitive instruments collecting ever larger data files. Consequently, the computational process of matching a peptide fragmentation pattern to its sequence, traditionally accomplished by sequence database searching and more recently also by spectral library searching, has become a bottleneck in many mass spectrometry experiments. In both of these methods, the main rate-limiting step is the comparison of an acquired spectrum with all potential matches from a spectral library or sequence database. This is a highly parallelizable process because the core computational element can be represented as a simple but arithmetically intense multiplication of two vectors. In this paper, we present a proof of concept project taking advantage of the massively parallel computing available on graphics processing units (GPUs) to distribute and accelerate the process of spectral assignment using spectral library searching. This program, which we have named FastPaSS (for Fast Parallelized Spectral Searching), is implemented in CUDA (Compute Unified Device Architecture) from NVIDIA, which allows direct access to the processors in an NVIDIA GPU. Our efforts demonstrate the feasibility of GPU computing for spectral assignment, through implementation of the validated spectral searching algorithm SpectraST in the CUDA environment.

  12. Localized saddle-point search and application to temperature-accelerated dynamics

    Energy Technology Data Exchange (ETDEWEB)

    Shim, Yunsic; Amar, Jacques G. [Department of Physics and Astronomy, University of Toledo, Toledo, Ohio 43606 (United States); Callahan, Nathan B. [Department of Physics and Astronomy, University of Toledo, Toledo, Ohio 43606 (United States); Department of Physics, Indiana University, Bloomington, Indiana 47405 (United States)

    2013-03-07

    We present a method for speeding up temperature-accelerated dynamics (TAD) simulations by carrying out a localized saddle-point (LSAD) search. In this method, instead of using the entire system to determine the energy barriers of activated processes, the calculation is localized by only including a small chunk of atoms around the atoms directly involved in the transition. Using this method, we have obtained N-independent scaling for the computational cost of the saddle-point search as a function of system size N. The error arising from localization is analyzed using a variety of model systems, including a variety of activated processes on Ag(100) and Cu(100) surfaces, as well as multiatom moves in Cu radiation damage and metal heteroepitaxial growth. Our results show significantly improved performance of TAD with the LSAD method, for the case of Ag/Ag(100) annealing and Cu/Cu(100) growth, while maintaining a negligibly small error in energy barriers.

  13. The Research and Test of Fast Radio Burst Real-time Search Algorithm Based on GPU Acceleration

    Science.gov (United States)

    Wang, J.; Chen, M. Z.; Pei, X.; Wang, Z. Q.

    2017-03-01

    In order to satisfy the research needs of Nanshan 25 m radio telescope of Xinjiang Astronomical Observatory (XAO) and study the key technology of the planned QiTai radio Telescope (QTT), the receiver group of XAO studied the GPU (Graphics Processing Unit) based real-time FRB searching algorithm which developed from the original FRB searching algorithm based on CPU (Central Processing Unit), and built the FRB real-time searching system. The comparison of the GPU system and the CPU system shows that: on the basis of ensuring the accuracy of the search, the speed of the GPU accelerated algorithm is improved by 35-45 times compared with the CPU algorithm.

  14. Accelerating Smith-Waterman Algorithm for Biological Database Search on CUDA-Compatible GPUs

    Science.gov (United States)

    Munekawa, Yuma; Ino, Fumihiko; Hagihara, Kenichi

    This paper presents a fast method capable of accelerating the Smith-Waterman algorithm for biological database search on a cluster of graphics processing units (GPUs). Our method is implemented using compute unified device architecture (CUDA), which is available on the nVIDIA GPU. As compared with previous methods, our method has four major contributions. (1) The method efficiently uses on-chip shared memory to reduce the data amount being transferred between off-chip video memory and processing elements in the GPU. (2) It also reduces the number of data fetches by applying a data reuse technique to query and database sequences. (3) A pipelined method is also implemented to overlap GPU execution with database access. (4) Finally, a master/worker paradigm is employed to accelerate hundreds of database searches on a cluster system. In experiments, the peak performance on a GeForce GTX 280 card reaches 8.32 giga cell updates per second (GCUPS). We also find that our method reduces the amount of data fetches to 1/140, achieving approximately three times higher performance than a previous CUDA-based method. Our 32-node cluster version is approximately 28 times faster than a single GPU version. Furthermore, the effective performance reaches 75.6 giga instructions per second (GIPS) using 32 GeForce 8800 GTX cards.

  15. Fast Structural Search in Phylogenetic Databases

    Directory of Open Access Journals (Sweden)

    William H. Piel

    2005-01-01

    Full Text Available As the size of phylogenetic databases grows, the need for efficiently searching these databases arises. Thanks to previous and ongoing research, searching by attribute value and by text has become commonplace in these databases. However, searching by topological or physical structure, especially for large databases and especially for approximate matches, is still an art. We propose structural search techniques that, given a query or pattern tree P and a database of phylogenies D, find trees in D that are sufficiently close to P . The “closeness” is a measure of the topological relationships in P that are found to be the same or similar in a tree D in D. We develop a filtering technique that accelerates searches and present algorithms for rooted and unrooted trees where the trees can be weighted or unweighted. Experimental results on comparing the similarity measure with existing tree metrics and on evaluating the efficiency of the search techniques demonstrate that the proposed approach is promising

  16. RxnFinder: biochemical reaction search engines using molecular structures, molecular fragments and reaction similarity.

    Science.gov (United States)

    Hu, Qian-Nan; Deng, Zhe; Hu, Huanan; Cao, Dong-Sheng; Liang, Yi-Zeng

    2011-09-01

    Biochemical reactions play a key role to help sustain life and allow cells to grow. RxnFinder was developed to search biochemical reactions from KEGG reaction database using three search criteria: molecular structures, molecular fragments and reaction similarity. RxnFinder is helpful to get reference reactions for biosynthesis and xenobiotics metabolism. RxnFinder is freely available via: http://sdd.whu.edu.cn/rxnfinder. qnhu@whu.edu.cn.

  17. Efficient Similarity Search Using the Earth Mover's Distance for Large Multimedia Databases

    DEFF Research Database (Denmark)

    Assent, Ira; Wichterich, Marc; Meisen, Tobias

    2008-01-01

    Multimedia similarity search in large databases requires efficient query processing. The Earth mover's distance, introduced in computer vision, is successfully used as a similarity model in a number of small-scale applications. Its computational complexity hindered its adoption in large multimedia...... databases. We enable directly indexing the Earth mover's distance in structures such as the R-tree and the VA-file by providing the accurate 'MinDist' function to any bounding rectangle in the index. We exploit the computational structure of the new MinDist to derive a new lower bound for the EMD Min...

  18. Content Based Retrieval Database Management System with Support for Similarity Searching and Query Refinement

    National Research Council Canada - National Science Library

    Ortega-Binderberger, Michael

    2002-01-01

    ... as a critical area of research. This thesis explores how to enhance database systems with content based search over arbitrary abstract data types in a similarity based framework with query refinement...

  19. Accelerated search of gamma-quantum families in a X-ray emulsion chamber

    International Nuclear Information System (INIS)

    Takibaev, Zh.S.; Bajgubekov, A.S.; Sadykov, T.Kh.

    1977-01-01

    The criteria are derived allowing to considerably accelerate the process of detecting the pure gamma-quantum families. The suitable criterion is the apparent size of the distribution of black spots due to electromagnetic cascades inside a circle of specific radius. The results of assaying 27 gamma-families with energies above 3 TeV generated in a target above the chamber are presented. The method of search for the target families suggested in this paper allows to cut four-fold the roentgen-emulsion cloud chamber treatment time

  20. GPU-accelerated low-latency real-time searches for gravitational waves from compact binary coalescence

    International Nuclear Information System (INIS)

    Liu Yuan; Du Zhihui; Chung, Shin Kee; Hooper, Shaun; Blair, David; Wen Linqing

    2012-01-01

    We present a graphics processing unit (GPU)-accelerated time-domain low-latency algorithm to search for gravitational waves (GWs) from coalescing binaries of compact objects based on the summed parallel infinite impulse response (SPIIR) filtering technique. The aim is to facilitate fast detection of GWs with a minimum delay to allow prompt electromagnetic follow-up observations. To maximize the GPU acceleration, we apply an efficient batched parallel computing model that significantly reduces the number of synchronizations in SPIIR and optimizes the usage of the memory and hardware resource. Our code is tested on the CUDA ‘Fermi’ architecture in a GTX 480 graphics card and its performance is compared with a single core of Intel Core i7 920 (2.67 GHz). A 58-fold speedup is achieved while giving results in close agreement with the CPU implementation. Our result indicates that it is possible to conduct a full search for GWs from compact binary coalescence in real time with only one desktop computer equipped with a Fermi GPU card for the initial LIGO detectors which in the past required more than 100 CPUs. (paper)

  1. Semantic similarity measures in the biomedical domain by leveraging a web search engine.

    Science.gov (United States)

    Hsieh, Sheau-Ling; Chang, Wen-Yung; Chen, Chi-Huang; Weng, Yung-Ching

    2013-07-01

    Various researches in web related semantic similarity measures have been deployed. However, measuring semantic similarity between two terms remains a challenging task. The traditional ontology-based methodologies have a limitation that both concepts must be resided in the same ontology tree(s). Unfortunately, in practice, the assumption is not always applicable. On the other hand, if the corpus is sufficiently adequate, the corpus-based methodologies can overcome the limitation. Now, the web is a continuous and enormous growth corpus. Therefore, a method of estimating semantic similarity is proposed via exploiting the page counts of two biomedical concepts returned by Google AJAX web search engine. The features are extracted as the co-occurrence patterns of two given terms P and Q, by querying P, Q, as well as P AND Q, and the web search hit counts of the defined lexico-syntactic patterns. These similarity scores of different patterns are evaluated, by adapting support vector machines for classification, to leverage the robustness of semantic similarity measures. Experimental results validating against two datasets: dataset 1 provided by A. Hliaoutakis; dataset 2 provided by T. Pedersen, are presented and discussed. In dataset 1, the proposed approach achieves the best correlation coefficient (0.802) under SNOMED-CT. In dataset 2, the proposed method obtains the best correlation coefficient (SNOMED-CT: 0.705; MeSH: 0.723) with physician scores comparing with measures of other methods. However, the correlation coefficients (SNOMED-CT: 0.496; MeSH: 0.539) with coder scores received opposite outcomes. In conclusion, the semantic similarity findings of the proposed method are close to those of physicians' ratings. Furthermore, the study provides a cornerstone investigation for extracting fully relevant information from digitizing, free-text medical records in the National Taiwan University Hospital database.

  2. Efficient protein structure search using indexing methods.

    Science.gov (United States)

    Kim, Sungchul; Sael, Lee; Yu, Hwanjo

    2013-01-01

    Understanding functions of proteins is one of the most important challenges in many studies of biological processes. The function of a protein can be predicted by analyzing the functions of structurally similar proteins, thus finding structurally similar proteins accurately and efficiently from a large set of proteins is crucial. A protein structure can be represented as a vector by 3D-Zernike Descriptor (3DZD) which compactly represents the surface shape of the protein tertiary structure. This simplified representation accelerates the searching process. However, computing the similarity of two protein structures is still computationally expensive, thus it is hard to efficiently process many simultaneous requests of structurally similar protein search. This paper proposes indexing techniques which substantially reduce the search time to find structurally similar proteins. In particular, we first exploit two indexing techniques, i.e., iDistance and iKernel, on the 3DZDs. After that, we extend the techniques to further improve the search speed for protein structures. The extended indexing techniques build and utilize an reduced index constructed from the first few attributes of 3DZDs of protein structures. To retrieve top-k similar structures, top-10 × k similar structures are first found using the reduced index, and top-k structures are selected among them. We also modify the indexing techniques to support θ-based nearest neighbor search, which returns data points less than θ to the query point. The results show that both iDistance and iKernel significantly enhance the searching speed. In top-k nearest neighbor search, the searching time is reduced 69.6%, 77%, 77.4% and 87.9%, respectively using iDistance, iKernel, the extended iDistance, and the extended iKernel. In θ-based nearest neighbor serach, the searching time is reduced 80%, 81%, 95.6% and 95.6% using iDistance, iKernel, the extended iDistance, and the extended iKernel, respectively.

  3. Detecting atypical examples of known domain types by sequence similarity searching: the SBASE domain library approach.

    Science.gov (United States)

    Dhir, Somdutta; Pacurar, Mircea; Franklin, Dino; Gáspári, Zoltán; Kertész-Farkas, Attila; Kocsor, András; Eisenhaber, Frank; Pongor, Sándor

    2010-11-01

    SBASE is a project initiated to detect known domain types and predicting domain architectures using sequence similarity searching (Simon et al., Protein Seq Data Anal, 5: 39-42, 1992, Pongor et al, Nucl. Acids. Res. 21:3111-3115, 1992). The current approach uses a curated collection of domain sequences - the SBASE domain library - and standard similarity search algorithms, followed by postprocessing which is based on a simple statistics of the domain similarity network (http://hydra.icgeb.trieste.it/sbase/). It is especially useful in detecting rare, atypical examples of known domain types which are sometimes missed even by more sophisticated methodologies. This approach does not require multiple alignment or machine learning techniques, and can be a useful complement to other domain detection methodologies. This article gives an overview of the project history as well as of the concepts and principles developed within this the project.

  4. Similarity Digest Search: A Survey and Comparative Analysis of Strategies to Perform Known File Filtering Using Approximate Matching

    Directory of Open Access Journals (Sweden)

    Vitor Hugo Galhardo Moia

    2017-01-01

    Full Text Available Digital forensics is a branch of Computer Science aiming at investigating and analyzing electronic devices in the search for crime evidence. There are several ways to perform this search. Known File Filter (KFF is one of them, where a list of interest objects is used to reduce/separate data for analysis. Holding a database of hashes of such objects, the examiner performs lookups for matches against the target device. However, due to limitations over hash functions (inability to detect similar objects, new methods have been designed, called approximate matching. This sort of function has interesting characteristics for KFF investigations but suffers mainly from high costs when dealing with huge data sets, as the search is usually done by brute force. To mitigate this problem, strategies have been developed to better perform lookups. In this paper, we present the state of the art of similarity digest search strategies, along with a detailed comparison involving several aspects, as time complexity, memory requirement, and search precision. Our results show that none of the approaches address at least these main aspects. Finally, we discuss future directions and present requirements for a new strategy aiming to fulfill current limitations.

  5. Attrition and success rates of accelerated students in nursing courses: a systematic review.

    Science.gov (United States)

    Doggrell, Sheila Anne; Schaffer, Sally

    2016-01-01

    There is a comprehensive literature on the academic outcomes (attrition and success) of students in traditional/baccalaureate nursing programs, but much less is known about the academic outcomes of students in accelerated nursing programs. The aim of this systematic review is to report on the attrition and success rates (either internal examination or NCLEX-RN) of accelerated students, compared to traditional students. For the systematic review, the databases (Pubmed, Cinahl and PsychINFO) and Google Scholar were searched using the search terms 'accelerated' or 'accreditation for prior learning', 'fast-track' or 'top up' and 'nursing' with 'attrition' or 'retention' or 'withdrawal' or 'success' from 1994 to January 2016. All relevant articles were included, regardless of quality. The findings of 19 studies of attrition rates and/or success rates for accelerated students are reported. For international accelerated students, there were only three studies, which are heterogeneous, and have major limitations. One of three studies has lower attrition rates, and one has shown higher success rates, than traditional students. In contrast, another study has shown high attrition and low success for international accelerated students. For graduate accelerated students, most of the studies are high quality, and showed that they have rates similar or better than traditional students. Thus, five of six studies have shown similar or lower attrition rates. Four of these studies with graduate accelerated students and an additional seven studies of success rates only, have shown similar or better success rates, than traditional students. There are only three studies of non-university graduate accelerated students, and these had weaknesses, but were consistent in reporting higher attrition rates than traditional students. The paucity and weakness of information available makes it unclear as to the attrition and/or success of international accelerated students in nursing programs. The

  6. SimShiftDB; local conformational restraints derived from chemical shift similarity searches on a large synthetic database

    Energy Technology Data Exchange (ETDEWEB)

    Ginzinger, Simon W. [Center of Applied Molecular Engineering, University of Salzburg, Department of Molecular Biology, Division of Bioinformatics (Austria)], E-mail: simon@came.sbg.ac.at; Coles, Murray [Max-Planck-Institute for Developmental Biology, Department of Protein Evolution (Germany)], E-mail: Murray.Coles@tuebingen.mpg.de

    2009-03-15

    We present SimShiftDB, a new program to extract conformational data from protein chemical shifts using structural alignments. The alignments are obtained in searches of a large database containing 13,000 structures and corresponding back-calculated chemical shifts. SimShiftDB makes use of chemical shift data to provide accurate results even in the case of low sequence similarity, and with even coverage of the conformational search space. We compare SimShiftDB to HHSearch, a state-of-the-art sequence-based search tool, and to TALOS, the current standard tool for the task. We show that for a significant fraction of the predicted similarities, SimShiftDB outperforms the other two methods. Particularly, the high coverage afforded by the larger database often allows predictions to be made for residues not involved in canonical secondary structure, where TALOS predictions are both less frequent and more error prone. Thus SimShiftDB can be seen as a complement to currently available methods.

  7. SimShiftDB; local conformational restraints derived from chemical shift similarity searches on a large synthetic database

    International Nuclear Information System (INIS)

    Ginzinger, Simon W.; Coles, Murray

    2009-01-01

    We present SimShiftDB, a new program to extract conformational data from protein chemical shifts using structural alignments. The alignments are obtained in searches of a large database containing 13,000 structures and corresponding back-calculated chemical shifts. SimShiftDB makes use of chemical shift data to provide accurate results even in the case of low sequence similarity, and with even coverage of the conformational search space. We compare SimShiftDB to HHSearch, a state-of-the-art sequence-based search tool, and to TALOS, the current standard tool for the task. We show that for a significant fraction of the predicted similarities, SimShiftDB outperforms the other two methods. Particularly, the high coverage afforded by the larger database often allows predictions to be made for residues not involved in canonical secondary structure, where TALOS predictions are both less frequent and more error prone. Thus SimShiftDB can be seen as a complement to currently available methods

  8. Accelerators - instruments and symbols for power

    International Nuclear Information System (INIS)

    Vogt, E.

    1985-01-01

    I examine the cult of accelerator physics, describe the laws which govern its development, compare and contrast it with other similar cults in the past, and search for its driving force. It is a story of sheer power. Not only of grand projects whose scale dwarfs everything we have imagined, whose funds deplete federal treasuries and whose real estate transcends national boundaries, but also of the very symbols of human power, directly connected to the destiny of our race

  9. Accelerators and Dinosaurs

    CERN Multimedia

    Turner, Michael Stanley

    2003-01-01

    Using naturally occuring particles on which to research might have made accelerators become extinct. But in fact, results from astrophysics have made accelerator physics even more important. Not only are accelerators used in hospitals but they are also being used to understand nature's inner workings by searching for Higgs bosons, CP violation, neutrino mass and dark matter (2 pages)

  10. Similarity-regulation of OS-EM for accelerated SPECT reconstruction

    Science.gov (United States)

    Vaissier, P. E. B.; Beekman, F. J.; Goorden, M. C.

    2016-06-01

    Ordered subsets expectation maximization (OS-EM) is widely used to accelerate image reconstruction in single photon emission computed tomography (SPECT). Speedup of OS-EM over maximum likelihood expectation maximization (ML-EM) is close to the number of subsets used. Although a high number of subsets can shorten reconstruction times significantly, it can also cause severe image artifacts such as improper erasure of reconstructed activity if projections contain few counts. We recently showed that such artifacts can be prevented by using a count-regulated OS-EM (CR-OS-EM) algorithm which automatically adapts the number of subsets for each voxel based on the estimated number of counts that the voxel contributed to the projections. While CR-OS-EM reached high speed-up over ML-EM in high-activity regions of images, speed in low-activity regions could still be very slow. In this work we propose similarity-regulated OS-EM (SR-OS-EM) as a much faster alternative to CR-OS-EM. SR-OS-EM also automatically and locally adapts the number of subsets, but it uses a different criterion for subset regulation: the number of subsets that is used for updating an individual voxel depends on how similar the reconstruction algorithm would update the estimated activity in that voxel with different subsets. Reconstructions of an image quality phantom and in vivo scans show that SR-OS-EM retains all of the favorable properties of CR-OS-EM, while reconstruction speed can be up to an order of magnitude higher in low-activity regions. Moreover our results suggest that SR-OS-EM can be operated with identical reconstruction parameters (including the number of iterations) for a wide range of count levels, which can be an additional advantage from a user perspective since users would only have to post-filter an image to present it at an appropriate noise level.

  11. Special issue - Applying the accelerator

    International Nuclear Information System (INIS)

    Anon.

    1995-01-01

    T'he CERN Courier is the international journal of high energy physics, covering current developments in and around this branch of basic science. A recurrent theme is applying the technology developed for particle accelerators, the machines which produce beams of high energy particles for physics experiments. Twentieth-century science is full of similar examples of applications derived from pure research. This special issue of the CERN Courier is given over to one theme - the applications of accelerators. Accelerator systems and facilities are normally associated with highenergy particle physics research, the search for fundamental particles and the quest to understand the physics of the Big Bang. To the layman, accelerator technology has become synonymous with large and expensive machines, exploiting the most modern technology for basic research. In reality, the range of accelerators and their applications is much broader. A vast number of accelerators, usually much smaller and operating for specific applications, create wealth and directly benefit the population, particularly in the important areas of healthcare, energy and the environment. There are well established applications in diagnostic and therapeutic medicine for research and routine clinical treatments. Accelerators and associated technologies are widely employed by industry for manufacturing and process control. In fundamental and applied research, accelerator systems are frequently used as tools. The biennial conference on the Applications of Accelerators in Industry and Research at Denton, Texas, attracts a thousand participants. This special issue of the CERN Courier includes articles on major applications, reflecting the diversity and value of accelerator technology. Under Guest Editor Dewi Lewis of Amersham International, contributions from leading international specialists with experience of the application end of the accelerator chain describe their fields of direct interest. The

  12. Special issue - Applying the accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Anon.

    1995-07-15

    T'he CERN Courier is the international journal of high energy physics, covering current developments in and around this branch of basic science. A recurrent theme is applying the technology developed for particle accelerators, the machines which produce beams of high energy particles for physics experiments. Twentieth-century science is full of similar examples of applications derived from pure research. This special issue of the CERN Courier is given over to one theme - the applications of accelerators. Accelerator systems and facilities are normally associated with highenergy particle physics research, the search for fundamental particles and the quest to understand the physics of the Big Bang. To the layman, accelerator technology has become synonymous with large and expensive machines, exploiting the most modern technology for basic research. In reality, the range of accelerators and their applications is much broader. A vast number of accelerators, usually much smaller and operating for specific applications, create wealth and directly benefit the population, particularly in the important areas of healthcare, energy and the environment. There are well established applications in diagnostic and therapeutic medicine for research and routine clinical treatments. Accelerators and associated technologies are widely employed by industry for manufacturing and process control. In fundamental and applied research, accelerator systems are frequently used as tools. The biennial conference on the Applications of Accelerators in Industry and Research at Denton, Texas, attracts a thousand participants. This special issue of the CERN Courier includes articles on major applications, reflecting the diversity and value of accelerator technology. Under Guest Editor Dewi Lewis of Amersham International, contributions from leading international specialists with experience of the application end of the accelerator chain describe their fields of direct interest. The contributions

  13. CAS CERN Accelerator School. Measurement and alignment of accelerator and detector magnets. Proceedings

    International Nuclear Information System (INIS)

    Turner, S.

    1998-01-01

    These proceedings present the lectures given at the eleventh specialised course organised by the CERN Accelerator School (CAS), the topic this time being 'Measurement and Alignment of Accelerator and Detector Magnets'. A similar course was already presented at Montreux, Switzerland in 1992 and its proceedings published as CERN 92-05. However recent progress in the field, especially in the use of superconducting magnets, has been so rapid that a revised course had become imperative. The lectures start with basic magnet theory and the motivation for magnet measurements followed by a review of superconducting magnets and their field dynamics. After a review of measurement methods, the details of search and harmonic coils, magnetic resonance techniques and Hall generators are given followed by methods to minimise errors in mechanical equipment, series production and detector magnet measurements. Turning to magnet metrology and alignment, first data quality control is explained followed by the setting of reference targets, and the alignment methods for accelerators and experiments including alignment by feedback. Finally seminars are presented on the biological effects of magnetic fields and on superconducting magnet fabrication and quality control. (orig.)

  14. Prospects for searching axion-like particle dark matter with dipole, toroidal and wiggler magnets

    Energy Technology Data Exchange (ETDEWEB)

    Baker, Oliver K. [Yale Univ., New Haven, CT (United States). Dept. of Physics; Betz, Michael; Caspers, Fritz [European Organization for Nuclear Research (CERN), Geneva (Switzerland); Jaeckel, Joerg [Institute for Particle Physics Phenomenology, Durham (United Kingdom); Lindner, Axel; Ringwald, Andreas [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany); Semertzidis, Yannis [Brookhaven National Lab., Upton, NY (United States); Sikivie, Pierre [Florida Univ., Gainesville, FL (United States). Dept. of Physics; Zioutas, Konstantin [Patras Univ. (Greece)

    2011-10-15

    In this work we consider searches for dark matter made of axions or axion-like particles (ALPs) using resonant radio frequency cavities inserted into dipole magnets from particle accelerators, wiggler magnets developed for accelerator based advanced light sources, and toroidal magnets similar to those used in particle physics detectors. We investigate the expected sensitivity of such ALP dark matter detectors and discuss the engineering aspects of building and tuning them. Brief mention is also made of even stronger field magnets that are becoming available due to improvements in magnetic technology. It is concluded that new experiments utilizing already existing magnets could greatly enlarge the mass region in searches for axion-like dark matter particles. (orig.)

  15. Prospects for searching axion-like particle dark matter with dipole, toroidal and wiggler magnets

    International Nuclear Information System (INIS)

    Baker, Oliver K.; Jaeckel, Joerg; Lindner, Axel; Ringwald, Andreas; Semertzidis, Yannis; Sikivie, Pierre

    2011-10-01

    In this work we consider searches for dark matter made of axions or axion-like particles (ALPs) using resonant radio frequency cavities inserted into dipole magnets from particle accelerators, wiggler magnets developed for accelerator based advanced light sources, and toroidal magnets similar to those used in particle physics detectors. We investigate the expected sensitivity of such ALP dark matter detectors and discuss the engineering aspects of building and tuning them. Brief mention is also made of even stronger field magnets that are becoming available due to improvements in magnetic technology. It is concluded that new experiments utilizing already existing magnets could greatly enlarge the mass region in searches for axion-like dark matter particles. (orig.)

  16. Accelerating Information Retrieval from Profile Hidden Markov Model Databases.

    Science.gov (United States)

    Tamimi, Ahmad; Ashhab, Yaqoub; Tamimi, Hashem

    2016-01-01

    Profile Hidden Markov Model (Profile-HMM) is an efficient statistical approach to represent protein families. Currently, several databases maintain valuable protein sequence information as profile-HMMs. There is an increasing interest to improve the efficiency of searching Profile-HMM databases to detect sequence-profile or profile-profile homology. However, most efforts to enhance searching efficiency have been focusing on improving the alignment algorithms. Although the performance of these algorithms is fairly acceptable, the growing size of these databases, as well as the increasing demand for using batch query searching approach, are strong motivations that call for further enhancement of information retrieval from profile-HMM databases. This work presents a heuristic method to accelerate the current profile-HMM homology searching approaches. The method works by cluster-based remodeling of the database to reduce the search space, rather than focusing on the alignment algorithms. Using different clustering techniques, 4284 TIGRFAMs profiles were clustered based on their similarities. A representative for each cluster was assigned. To enhance sensitivity, we proposed an extended step that allows overlapping among clusters. A validation benchmark of 6000 randomly selected protein sequences was used to query the clustered profiles. To evaluate the efficiency of our approach, speed and recall values were measured and compared with the sequential search approach. Using hierarchical, k-means, and connected component clustering techniques followed by the extended overlapping step, we obtained an average reduction in time of 41%, and an average recall of 96%. Our results demonstrate that representation of profile-HMMs using a clustering-based approach can significantly accelerate data retrieval from profile-HMM databases.

  17. General relativistic self-similar waves that induce an anomalous acceleration into the standard model of cosmology

    CERN Document Server

    Smoller, Joel

    2012-01-01

    We prove that the Einstein equations in Standard Schwarzschild Coordinates close to form a system of three ordinary differential equations for a family of spherically symmetric, self-similar expansion waves, and the critical ($k=0$) Friedmann universe associated with the pure radiation phase of the Standard Model of Cosmology (FRW), is embedded as a single point in this family. Removing a scaling law and imposing regularity at the center, we prove that the family reduces to an implicitly defined one parameter family of distinct spacetimes determined by the value of a new {\\it acceleration parameter} $a$, such that $a=1$ corresponds to FRW. We prove that all self-similar spacetimes in the family are distinct from the non-critical $k\

  18. Accelerator development

    International Nuclear Information System (INIS)

    Anon.

    1975-01-01

    Because the use of accelerated heavy ions would provide many opportunities for new and important studies in nuclear physics and nuclear chemistry, as well as other disciplines, both the Chemistry and Physics Divisions are supporting the development of a heavy-ion accelerator. The design of greatest current interest includes a tandem accelerator with a terminal voltage of approximately 25 MV injecting into a linear accelerator with rf superconducting resonators. This combined accelerator facility would be capable of accelerating ions of masses ranging over the entire periodic table to an energy corresponding to approximately 10 MeV/nucleon. This approach, as compared to other concepts, has the advantages of lower construction costs, lower operating power, 100 percent duty factor, and high beam quality (good energy resolution, good timing resolution, small beam size, and small beam divergence). The included sections describe the concept of the proposed heavy-ion accelerator, and the development program aiming at: (1) investigation of the individual questions concerning the superconducting accelerating resonators; (2) construction and testing of prototype accelerator systems; and (3) search for economical solutions to engineering problems. (U.S.)

  19. Similar head impact acceleration measured using instrumented ear patches in a junior rugby union team during matches in comparison with other sports.

    Science.gov (United States)

    King, Doug A; Hume, Patria A; Gissane, Conor; Clark, Trevor N

    2016-07-01

    OBJECTIVE Direct impact with the head and the inertial loading of the head have been postulated as major mechanisms of head-related injuries, such as concussion. METHODS This descriptive observational study was conducted to quantify the head impact acceleration characteristics in under-9-year-old junior rugby union players in New Zealand. The impact magnitude, frequency, and location were collected with a wireless head impact sensor that was worn by 14 junior rugby players who participated in 4 matches. RESULTS A total of 721 impacts > 10g were recorded. The median (interquartile range [IQR]) number of impacts per player was 46 (IQR 37-58), resulting in 10 (IQR 4-18) impacts to the head per player per match. The median impact magnitudes recorded were 15g (IQR 12g-21g) for linear acceleration and 2296 rad/sec(2) (IQR 1352-4152 rad/sec(2)) for rotational acceleration. CONCLUSIONS There were 121 impacts (16.8%) above the rotational injury risk limit and 1 (0.1%) impact above the linear injury risk limit. The acceleration magnitude and number of head impacts in junior rugby union players were higher than those previously reported in similar age-group sports participants. The median linear acceleration for the under-9-year-old rugby players were similar to 7- to 8-year-old American football players, but lower than 9- to 12-year-old youth American football players. The median rotational accelerations measured were higher than the median and 95th percentiles in youth, high school, and collegiate American football players.

  20. Current trends in non-accelerator particle physics: 1, Neutrino mass and oscillation. 2, High energy neutrino astrophysics. 3, Detection of dark matter. 4, Search for strange quark matter. 5, Magnetic monopole searches

    International Nuclear Information System (INIS)

    He, Yudong

    1995-07-01

    This report is a compilation of papers reflecting current trends in non-accelerator particle physics, corresponding to talks that its author was invited to present at the Workshop on Tibet Cosmic Ray Experiment and Related Physics Topics held in Beijing, China, April 4--13, 1995. The papers are entitled 'Neutrino Mass and Oscillation', 'High Energy Neutrino Astrophysics', 'Detection of Dark Matter', 'Search for Strange Quark Matter', and 'Magnetic Monopole Searches'. The report is introduced by a survey of the field and a brief description of each of the author's papers

  1. Simrank: Rapid and sensitive general-purpose k-mer search tool

    Energy Technology Data Exchange (ETDEWEB)

    DeSantis, T.Z.; Keller, K.; Karaoz, U.; Alekseyenko, A.V; Singh, N.N.S.; Brodie, E.L; Pei, Z.; Andersen, G.L; Larsen, N.

    2011-04-01

    Terabyte-scale collections of string-encoded data are expected from consortia efforts such as the Human Microbiome Project (http://nihroadmap.nih.gov/hmp). Intra- and inter-project data similarity searches are enabled by rapid k-mer matching strategies. Software applications for sequence database partitioning, guide tree estimation, molecular classification and alignment acceleration have benefited from embedded k-mer searches as sub-routines. However, a rapid, general-purpose, open-source, flexible, stand-alone k-mer tool has not been available. Here we present a stand-alone utility, Simrank, which allows users to rapidly identify database strings the most similar to query strings. Performance testing of Simrank and related tools against DNA, RNA, protein and human-languages found Simrank 10X to 928X faster depending on the dataset. Simrank provides molecular ecologists with a high-throughput, open source choice for comparing large sequence sets to find similarity.

  2. Exceptional Ground Accelerations and Velocities Caused by Earthquakes

    Energy Technology Data Exchange (ETDEWEB)

    Anderson, John

    2008-01-17

    This project aims to understand the characteristics of the free-field strong-motion records that have yielded the 100 largest peak accelerations and the 100 largest peak velocities recorded to date. The peak is defined as the maximum magnitude of the acceleration or velocity vector during the strong shaking. This compilation includes 35 records with peak acceleration greater than gravity, and 41 records with peak velocities greater than 100 cm/s. The results represent an estimated 150,000 instrument-years of strong-motion recordings. The mean horizontal acceleration or velocity, as used for the NGA ground motion models, is typically 0.76 times the magnitude of this vector peak. Accelerations in the top 100 come from earthquakes as small as magnitude 5, while velocities in the top 100 all come from earthquakes with magnitude 6 or larger. Records are dominated by crustal earthquakes with thrust, oblique-thrust, or strike-slip mechanisms. Normal faulting mechanisms in crustal earthquakes constitute under 5% of the records in the databases searched, and an even smaller percentage of the exceptional records. All NEHRP site categories have contributed exceptional records, in proportions similar to the extent that they are represented in the larger database.

  3. New accelerator ideas

    International Nuclear Information System (INIS)

    Anon.

    1985-01-01

    In the past, providing higher particle beam energies meant building bigger accelerators. It is now universally accepted that with the current generation of accelerator projects either under construction (such as LEP at CERN) or proposed (such as the Superconducting Super Collider in the US), conventional techniques are reaching their practical limit. With the growing awareness that progress in particle physics requires new methods to accelerate particles, workshops and study groups are being set up across the world to search for ideas for the machines of tomorrow

  4. New accelerator ideas

    Energy Technology Data Exchange (ETDEWEB)

    Anon.

    1985-05-15

    In the past, providing higher particle beam energies meant building bigger accelerators. It is now universally accepted that with the current generation of accelerator projects either under construction (such as LEP at CERN) or proposed (such as the Superconducting Super Collider in the US), conventional techniques are reaching their practical limit. With the growing awareness that progress in particle physics requires new methods to accelerate particles, workshops and study groups are being set up across the world to search for ideas for the machines of tomorrow.

  5. Accelerating execution of the integrated TIGER series Monte Carlo radiation transport codes

    Science.gov (United States)

    Smith, L. M.; Hochstedler, R. D.

    1997-02-01

    Execution of the integrated TIGER series (ITS) of coupled electron/photon Monte Carlo radiation transport codes has been accelerated by modifying the FORTRAN source code for more efficient computation. Each member code of ITS was benchmarked and profiled with a specific test case that directed the acceleration effort toward the most computationally intensive subroutines. Techniques for accelerating these subroutines included replacing linear search algorithms with binary versions, replacing the pseudo-random number generator, reducing program memory allocation, and proofing the input files for geometrical redundancies. All techniques produced identical or statistically similar results to the original code. Final benchmark timing of the accelerated code resulted in speed-up factors of 2.00 for TIGER (the one-dimensional slab geometry code), 1.74 for CYLTRAN (the two-dimensional cylindrical geometry code), and 1.90 for ACCEPT (the arbitrary three-dimensional geometry code).

  6. Accelerating execution of the integrated TIGER series Monte Carlo radiation transport codes

    International Nuclear Information System (INIS)

    Smith, L.M.; Hochstedler, R.D.

    1997-01-01

    Execution of the integrated TIGER series (ITS) of coupled electron/photon Monte Carlo radiation transport codes has been accelerated by modifying the FORTRAN source code for more efficient computation. Each member code of ITS was benchmarked and profiled with a specific test case that directed the acceleration effort toward the most computationally intensive subroutines. Techniques for accelerating these subroutines included replacing linear search algorithms with binary versions, replacing the pseudo-random number generator, reducing program memory allocation, and proofing the input files for geometrical redundancies. All techniques produced identical or statistically similar results to the original code. Final benchmark timing of the accelerated code resulted in speed-up factors of 2.00 for TIGER (the one-dimensional slab geometry code), 1.74 for CYLTRAN (the two-dimensional cylindrical geometry code), and 1.90 for ACCEPT (the arbitrary three-dimensional geometry code)

  7. Accelerating Information Retrieval from Profile Hidden Markov Model Databases.

    Directory of Open Access Journals (Sweden)

    Ahmad Tamimi

    Full Text Available Profile Hidden Markov Model (Profile-HMM is an efficient statistical approach to represent protein families. Currently, several databases maintain valuable protein sequence information as profile-HMMs. There is an increasing interest to improve the efficiency of searching Profile-HMM databases to detect sequence-profile or profile-profile homology. However, most efforts to enhance searching efficiency have been focusing on improving the alignment algorithms. Although the performance of these algorithms is fairly acceptable, the growing size of these databases, as well as the increasing demand for using batch query searching approach, are strong motivations that call for further enhancement of information retrieval from profile-HMM databases. This work presents a heuristic method to accelerate the current profile-HMM homology searching approaches. The method works by cluster-based remodeling of the database to reduce the search space, rather than focusing on the alignment algorithms. Using different clustering techniques, 4284 TIGRFAMs profiles were clustered based on their similarities. A representative for each cluster was assigned. To enhance sensitivity, we proposed an extended step that allows overlapping among clusters. A validation benchmark of 6000 randomly selected protein sequences was used to query the clustered profiles. To evaluate the efficiency of our approach, speed and recall values were measured and compared with the sequential search approach. Using hierarchical, k-means, and connected component clustering techniques followed by the extended overlapping step, we obtained an average reduction in time of 41%, and an average recall of 96%. Our results demonstrate that representation of profile-HMMs using a clustering-based approach can significantly accelerate data retrieval from profile-HMM databases.

  8. PLC-based search and secure interlock system for the personnel safety in folded tandem ion accelerator

    International Nuclear Information System (INIS)

    Padmakumar, Sapna; Subramanyum, N.B.V.; Bhatt, Jignesh P.; Ware, Shailaja V.; Kansara, M.J.; Gupta, S.K.; Singh, P.

    2006-01-01

    Safety of the personnel is one of the key issues addressed in any accelerator project. The FOTIA facility at BARC is capable of operating under standard operation conditions without any radiation hazard. Even then for a safe and reliable operation of FOTIA a PLC (Programmable logic controller) based interlock system has been implemented. This interlocking system is compact, modular, flexible, robust and easy for troubleshooting. These advantages led to the popularity of PLC rather than using a relay-based system. This paper highlights the salient features of the search and secure interlock for the personal safety of FOTIA. (author)

  9. A periodic plasma waveguide accelerator

    International Nuclear Information System (INIS)

    Cole, F.T.

    1985-01-01

    The increasing cost of synchrotrons and storage rings has given new interest in the search for new methods of acceleration. The primary goal of this search is very large accelerating fields, because the cost of an accelerator to reach TeV energies is dominated by costs that scale with length. Very large electric fields are possible in plasmas and in lasers and many geometries are being studied that make use of plasmas, lasers, or combinations of them. In a plasma accelerator, the plasma can have several different functions. It may act as a medium for the propagation of accelerating electric-field waves. In addition, these waves may also act as a source of the energy needed to accelerate particles. Accelerators using various waves in plasmas have been built and studied in many laboratories. The device proposed here is an attempt to separate the two functions of providing a medium and providing an energy source. A relatively low-energy electron beam is used as a non-neutral plasma only to make a slow-wave medium for the propagation of an externally generated wave. The wave is a TM electromagnetic wave and the device may be thought of as a conventional electron linear accelerator with the evacuated volume and metallic envelope replaced by the electron beam. A separate second beam, which may be electrons or heavier particles, is accelerated. The application in mind here is a single-pass collider

  10. Pushing hard on the accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Anon.

    1987-09-15

    The quest for new techniques to drive future generations of particle accelerators has been pushed hard in recent years, efforts having been highlighted by workshops in Europe, organized by the European Committee for Future Accelerators, and in the US. The latest ECFA Workshop on New Developments in Particle Acceleration Techniques, held at Orsay from 29 June to 4 July, showed how the initial frantic search for innovation is now maturing.

  11. Sequence heterogeneity accelerates protein search for targets on DNA

    International Nuclear Information System (INIS)

    Shvets, Alexey A.; Kolomeisky, Anatoly B.

    2015-01-01

    The process of protein search for specific binding sites on DNA is fundamentally important since it marks the beginning of all major biological processes. We present a theoretical investigation that probes the role of DNA sequence symmetry, heterogeneity, and chemical composition in the protein search dynamics. Using a discrete-state stochastic approach with a first-passage events analysis, which takes into account the most relevant physical-chemical processes, a full analytical description of the search dynamics is obtained. It is found that, contrary to existing views, the protein search is generally faster on DNA with more heterogeneous sequences. In addition, the search dynamics might be affected by the chemical composition near the target site. The physical origins of these phenomena are discussed. Our results suggest that biological processes might be effectively regulated by modifying chemical composition, symmetry, and heterogeneity of a genome

  12. Sequence heterogeneity accelerates protein search for targets on DNA

    Energy Technology Data Exchange (ETDEWEB)

    Shvets, Alexey A.; Kolomeisky, Anatoly B., E-mail: tolya@rice.edu [Department of Chemistry and Center for Theoretical Biological Physics, Rice University, Houston, Texas 77005 (United States)

    2015-12-28

    The process of protein search for specific binding sites on DNA is fundamentally important since it marks the beginning of all major biological processes. We present a theoretical investigation that probes the role of DNA sequence symmetry, heterogeneity, and chemical composition in the protein search dynamics. Using a discrete-state stochastic approach with a first-passage events analysis, which takes into account the most relevant physical-chemical processes, a full analytical description of the search dynamics is obtained. It is found that, contrary to existing views, the protein search is generally faster on DNA with more heterogeneous sequences. In addition, the search dynamics might be affected by the chemical composition near the target site. The physical origins of these phenomena are discussed. Our results suggest that biological processes might be effectively regulated by modifying chemical composition, symmetry, and heterogeneity of a genome.

  13. Outsourced similarity search on metric data assets

    KAUST Repository

    Yiu, Man Lung

    2012-02-01

    This paper considers a cloud computing setting in which similarity querying of metric data is outsourced to a service provider. The data is to be revealed only to trusted users, not to the service provider or anyone else. Users query the server for the most similar data objects to a query example. Outsourcing offers the data owner scalability and a low-initial investment. The need for privacy may be due to the data being sensitive (e.g., in medicine), valuable (e.g., in astronomy), or otherwise confidential. Given this setting, the paper presents techniques that transform the data prior to supplying it to the service provider for similarity queries on the transformed data. Our techniques provide interesting trade-offs between query cost and accuracy. They are then further extended to offer an intuitive privacy guarantee. Empirical studies with real data demonstrate that the techniques are capable of offering privacy while enabling efficient and accurate processing of similarity queries.

  14. A Similarity Search Using Molecular Topological Graphs

    Directory of Open Access Journals (Sweden)

    Yoshifumi Fukunishi

    2009-01-01

    Full Text Available A molecular similarity measure has been developed using molecular topological graphs and atomic partial charges. Two kinds of topological graphs were used. One is the ordinary adjacency matrix and the other is a matrix which represents the minimum path length between two atoms of the molecule. The ordinary adjacency matrix is suitable to compare the local structures of molecules such as functional groups, and the other matrix is suitable to compare the global structures of molecules. The combination of these two matrices gave a similarity measure. This method was applied to in silico drug screening, and the results showed that it was effective as a similarity measure.

  15. Disruption of gut homeostasis by opioids accelerates HIV disease progression

    Directory of Open Access Journals (Sweden)

    Jingjing eMeng

    2015-06-01

    Full Text Available Cumulative studies during the past 30 years have established the correlation between opioid abuse and human immunodeficiency virus (HIV infection. Further studies also demonstrate that opioid addiction is associated with faster progression to AIDS in patients. Recently, it was revealed that disruption of gut homeostasis and subsequent microbial translocation play important roles in pathological activation of the immune system during HIV infection and contributes to accelerated disease progression. Similarly, opioids have been shown to modulate gut immunity and induce gut bacterial translocation. This review will explore the mechanisms by which opioids accelerate HIV disease progression by disrupting gut homeostasis. Better understanding of these mechanisms will facilitate the search for new therapeutic interventions to treat HIV infection especially in opioid abusing population.

  16. Semantic search during divergent thinking.

    Science.gov (United States)

    Hass, Richard W

    2017-09-01

    Divergent thinking, as a method of examining creative cognition, has not been adequately analyzed in the context of modern cognitive theories. This article casts divergent thinking responding in the context of theories of memory search. First, it was argued that divergent thinking tasks are similar to semantic fluency tasks, but are more constrained, and less well structured. Next, response time distributions from 54 participants were analyzed for temporal and semantic clustering. Participants responded to two prompts from the alternative uses test: uses for a brick and uses for a bottle, for two minutes each. Participants' cumulative response curves were negatively accelerating, in line with theories of search of associative memory. However, results of analyses of semantic and temporal clustering suggested that clustering is less evident in alternative uses responding compared to semantic fluency tasks. This suggests either that divergent thinking responding does not involve an exhaustive search through a clustered memory trace, but rather that the process is more exploratory, yielding fewer overall responses that tend to drift away from close associates of the divergent thinking prompt. Copyright © 2017 Elsevier B.V. All rights reserved.

  17. Beyond the search surface: visual search and attentional engagement.

    Science.gov (United States)

    Duncan, J; Humphreys, G

    1992-05-01

    Treisman (1991) described a series of visual search studies testing feature integration theory against an alternative (Duncan & Humphreys, 1989) in which feature and conjunction search are basically similar. Here the latter account is noted to have 2 distinct levels: (a) a summary of search findings in terms of stimulus similarities, and (b) a theory of how visual attention is brought to bear on relevant objects. Working at the 1st level, Treisman found that even when similarities were calibrated and controlled, conjunction search was much harder than feature search. The theory, however, can only really be tested at the 2nd level, because the 1st is an approximation. An account of the findings is developed at the 2nd level, based on the 2 processes of input-template matching and spreading suppression. New data show that, when both of these factors are controlled, feature and conjunction search are equally difficult. Possibilities for unification of the alternative views are considered.

  18. The baryonic self similarity of dark matter

    International Nuclear Information System (INIS)

    Alard, C.

    2014-01-01

    The cosmological simulations indicates that dark matter halos have specific self-similar properties. However, the halo similarity is affected by the baryonic feedback. By using momentum-driven winds as a model to represent the baryon feedback, an equilibrium condition is derived which directly implies the emergence of a new type of similarity. The new self-similar solution has constant acceleration at a reference radius for both dark matter and baryons. This model receives strong support from the observations of galaxies. The new self-similar properties imply that the total acceleration at larger distances is scale-free, the transition between the dark matter and baryons dominated regime occurs at a constant acceleration, and the maximum amplitude of the velocity curve at larger distances is proportional to M 1/4 . These results demonstrate that this self-similar model is consistent with the basics of modified Newtonian dynamics (MOND) phenomenology. In agreement with the observations, the coincidence between the self-similar model and MOND breaks at the scale of clusters of galaxies. Some numerical experiments show that the behavior of the density near the origin is closely approximated by a Einasto profile.

  19. Combination of Pharmacophore Matching, 2D Similarity Search, and In Vitro Biological Assays in the Selection of Potential 5-HT6 Antagonists from Large Commercial Repositories.

    Science.gov (United States)

    Dobi, Krisztina; Flachner, Beáta; Pukáncsik, Mária; Máthé, Enikő; Bognár, Melinda; Szaszkó, Mária; Magyar, Csaba; Hajdú, István; Lőrincz, Zsolt; Simon, István; Fülöp, Ferenc; Cseh, Sándor; Dormán, György

    2015-10-01

    Rapid in silico selection of target-focused libraries from commercial repositories is an attractive and cost-effective approach. If structures of active compounds are available, rapid 2D similarity search can be performed on multimillion compound databases, but the generated library requires further focusing. We report here a combination of the 2D approach with pharmacophore matching which was used for selecting 5-HT6 antagonists. In the first screening round, 12 compounds showed >85% antagonist efficacy of the 91 screened. For the second-round (hit validation) screening phase, pharmacophore models were built, applied, and compared with the routine 2D similarity search. Three pharmacophore models were created based on the structure of the reference compounds and the first-round hit compounds. The pharmacophore search resulted in a high hit rate (40%) and led to novel chemotypes, while 2D similarity search had slightly better hit rate (51%), but lacking the novelty. To demonstrate the power of the virtual screening cascade, ligand efficiency indices were also calculated and their steady improvement was confirmed. © 2015 John Wiley & Sons A/S.

  20. Searching the protein structure database for ligand-binding site similarities using CPASS v.2

    Directory of Open Access Journals (Sweden)

    Caprez Adam

    2011-01-01

    Full Text Available Abstract Background A recent analysis of protein sequences deposited in the NCBI RefSeq database indicates that ~8.5 million protein sequences are encoded in prokaryotic and eukaryotic genomes, where ~30% are explicitly annotated as "hypothetical" or "uncharacterized" protein. Our Comparison of Protein Active-Site Structures (CPASS v.2 database and software compares the sequence and structural characteristics of experimentally determined ligand binding sites to infer a functional relationship in the absence of global sequence or structure similarity. CPASS is an important component of our Functional Annotation Screening Technology by NMR (FAST-NMR protocol and has been successfully applied to aid the annotation of a number of proteins of unknown function. Findings We report a major upgrade to our CPASS software and database that significantly improves its broad utility. CPASS v.2 is designed with a layered architecture to increase flexibility and portability that also enables job distribution over the Open Science Grid (OSG to increase speed. Similarly, the CPASS interface was enhanced to provide more user flexibility in submitting a CPASS query. CPASS v.2 now allows for both automatic and manual definition of ligand-binding sites and permits pair-wise, one versus all, one versus list, or list versus list comparisons. Solvent accessible surface area, ligand root-mean square difference, and Cβ distances have been incorporated into the CPASS similarity function to improve the quality of the results. The CPASS database has also been updated. Conclusions CPASS v.2 is more than an order of magnitude faster than the original implementation, and allows for multiple simultaneous job submissions. Similarly, the CPASS database of ligand-defined binding sites has increased in size by ~ 38%, dramatically increasing the likelihood of a positive search result. The modification to the CPASS similarity function is effective in reducing CPASS similarity scores

  1. Outsourced Similarity Search on Metric Data Assets

    DEFF Research Database (Denmark)

    Yiu, Man Lung; Assent, Ira; Jensen, Christian S.

    2012-01-01

    . Outsourcing offers the data owner scalability and a low initial investment. The need for privacy may be due to the data being sensitive (e.g., in medicine), valuable (e.g., in astronomy), or otherwise confidential. Given this setting, the paper presents techniques that transform the data prior to supplying......This paper considers a cloud computing setting in which similarity querying of metric data is outsourced to a service provider. The data is to be revealed only to trusted users, not to the service provider or anyone else. Users query the server for the most similar data objects to a query example...

  2. A Framework for Similarity Search with Space-Time Tradeoffs using Locality Sensitive Filtering

    DEFF Research Database (Denmark)

    Christiani, Tobias Lybecker

    2017-01-01

    that satisfies certain locality-sensitivity properties, we can construct a dynamic data structure that solves the approximate near neighbor problem in $d$-dimensional space with query time $dn^{\\rho_q + o(1)}$, update time $dn^{\\rho_u + o(1)}$, and space usage $dn + n^{1 + \\rho_u + o(1)}$ where $n$ denotes......We present a framework for similarity search based on Locality-Sensitive Filtering~(LSF),generalizing the Indyk-Motwani (STOC 1998) Locality-Sensitive Hashing~(LSH) framework to support space-time tradeoffs. Given a family of filters, defined as a distribution over pairs of subsets of space...... the number of points in the data structure.The space-time tradeoff is tied to the tradeoff between query time and update time (insertions/deletions), controlled by the exponents $\\rho_q, \\rho_u$ that are determined by the filter family. \\\\ Locality-sensitive filtering was introduced by Becker et al. (SODA...

  3. Identification of cosmic accelerators: search for GeV pulsar nebulae with the Large Area Fermi telescope

    International Nuclear Information System (INIS)

    Rousseau, R.

    2013-01-01

    The Fermi Gamma-ray Space Telescope was launched on 2008 June 11, carrying the Large Area Telescope (LAT), sensitive to gamma-rays from 20 MeV to more than 300 GeV. Its constantly improving sensitivity and performance offer a new opportunity to understand the sources of the gamma-ray sky including Pulsar Wind Nebulae (PWNe). PWNe are powered by the constant injection of a relativistic wind of electrons and positrons from their central pulsars. These charged particles are accelerated at the shock front forming the PWN and emit photons which can be observed along the entire electromagnetic spectrum, including the high energy gamma-ray domain via inverse Compton scattering. This thesis presents the detailed analysis of two sources of gamma-ray emission potentially associated to PWNe: MSH 11-62 and HESS J1857+026. The combination of the spatial and spectral analyses provide new elements to confirm these associations. In a second step, we describe a search for counterparts to sources detected by Cerenkov telescopes. This search led to the detection of six new LAT sources potentially associated with PWNe. These studies bring new insights and constraints on the physical properties of the sources as well as on emitting processes by constraining the models and allowing population studies. (author)

  4. Accelerating object detection via a visual-feature-directed search cascade: algorithm and field programmable gate array implementation

    Science.gov (United States)

    Kyrkou, Christos; Theocharides, Theocharis

    2016-07-01

    Object detection is a major step in several computer vision applications and a requirement for most smart camera systems. Recent advances in hardware acceleration for real-time object detection feature extensive use of reconfigurable hardware [field programmable gate arrays (FPGAs)], and relevant research has produced quite fascinating results, in both the accuracy of the detection algorithms as well as the performance in terms of frames per second (fps) for use in embedded smart camera systems. Detecting objects in images, however, is a daunting task and often involves hardware-inefficient steps, both in terms of the datapath design and in terms of input/output and memory access patterns. We present how a visual-feature-directed search cascade composed of motion detection, depth computation, and edge detection, can have a significant impact in reducing the data that needs to be examined by the classification engine for the presence of an object of interest. Experimental results on a Spartan 6 FPGA platform for face detection indicate data search reduction of up to 95%, which results in the system being able to process up to 50 1024×768 pixels images per second with a significantly reduced number of false positives.

  5. Improving performance of content-based image retrieval schemes in searching for similar breast mass regions: an assessment

    International Nuclear Information System (INIS)

    Wang Xiaohui; Park, Sang Cheol; Zheng Bin

    2009-01-01

    This study aims to assess three methods commonly used in content-based image retrieval (CBIR) schemes and investigate the approaches to improve scheme performance. A reference database involving 3000 regions of interest (ROIs) was established. Among them, 400 ROIs were randomly selected to form a testing dataset. Three methods, namely mutual information, Pearson's correlation and a multi-feature-based k-nearest neighbor (KNN) algorithm, were applied to search for the 15 'the most similar' reference ROIs to each testing ROI. The clinical relevance and visual similarity of searching results were evaluated using the areas under receiver operating characteristic (ROC) curves (A Z ) and average mean square difference (MSD) of the mass boundary spiculation level ratings between testing and selected ROIs, respectively. The results showed that the A Z values were 0.893 ± 0.009, 0.606 ± 0.021 and 0.699 ± 0.026 for the use of KNN, mutual information and Pearson's correlation, respectively. The A Z values increased to 0.724 ± 0.017 and 0.787 ± 0.016 for mutual information and Pearson's correlation when using ROIs with the size adaptively adjusted based on actual mass size. The corresponding MSD values were 2.107 ± 0.718, 2.301 ± 0.733 and 2.298 ± 0.743. The study demonstrates that due to the diversity of medical images, CBIR schemes using multiple image features and mass size-based ROIs can achieve significantly improved performance.

  6. A study of reflex tandem accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Nakajima, Takao; Morinobu, Shunpei; Gono, Yasuyuki; Sagara, Kenji; Sugimitsu, Tsuyoshi; Mitarai, Shiro; Nakamura, Hiroyuki; Ikeda, Nobuo; Morikawa, Tsuneyasu [Kyushu Univ., Fukuoka (Japan). Faculty of Science

    1996-12-01

    An investigation on `developing research theme and its realizing experimental apparatus` based on the tandem accelerator facility is executed. At a standpoint of recognition on essentiality of preparation, improvement or novel technical development capable of extreme increase in capacity of the tandem accelerator facility to form COE with high uniqueness, proposal of numerous ideas and their investigations and searches were conducted. In this paper, consideration results of `beam reacceleration using tandem accelerator` were shown as follows: (1) Short life unstable nuclei formed by nuclear reaction using tandem acceleration primary beam is ionized to negative and to reaccelerate by using the same tandem accelerator. And (2) by combination of plural electrons with the tandem primary accelerated beam, numbers of charge is reduced to reaccelerate by the tandem. (G.K.)

  7. Accelerator and Ion Beam Tradeoffs for Studies of Warm Dense Matter

    International Nuclear Information System (INIS)

    Barnard, J.J.; Briggs, R.J.; Callahan, D.A.; Davidson, R.C.; Friedman, A.; Grisham, L.; Lee, E.P.; Lee, R.W.; Logan, B.G.; Olson, C.L.; Rose, D.V.; Santhanam, P.; Sessler, A.M.; Staples, J.W.; Tabak, M.; Welch, D.R.; Wurtele, J.S.; Yu, S.S.

    2006-01-01

    One approach for heating a target to ''Warm Dense Matter'' conditions (similar, for example, to the interiors of giant planets or certain stages in inertial confinement fusion targets), is to use intense ion beams as the heating source (see refs.[6] and [7] and references therein for motivation and accelerator concepts). By consideration of ion beam phase-space constraints, both at the injector, and at the final focus, and consideration of simple equations of state and relations for ion stopping, approximate conditions at the target foil may be calculated. Thus, target temperature and pressure may be calculated as a function of ion mass, ion energy, pulse duration, velocity tilt, and other accelerator parameters. We connect some of these basic parameters to help search the extensive parameter space including ion mass, ion energy, total charge in beam pulse, beam emittance, target thickness and density

  8. Searches for new physics

    International Nuclear Information System (INIS)

    Ellis, J.; Pauss, F.

    1989-01-01

    The CERN p bar p Collider has been the first accelerator to operate in a completely new energy domain, reaching center-of-mass energies an order of magnitude larger than those previously available with the intersecting Storage Rings (ISR) at CERN, or with the Positron-Electron Tandem Ring Accelerator (PETRA) at DESY and the Positron-Electron Project (PEP) at SLAC. Naturally there has been great interest in the searches for new physics in this virgin territory. Theorists have approached these searches from either or both of two rival points of view. Either they have had an a priori prejudice as to what new physics should be searched for, and what its signatures should be, or they have tried to interpret a posteriori some experimental observations. The basic building-blocks of new physics in the 100 GeV energy domain are jets j, charged leptons l, photons γ, and missing transverse energy E T . Therefore searches have been conducted in channels which are combinations of these elements. It also shows some of the main a priori theoretical prejudices which can be explored in each of these channels. The layout of the rest of this paper is as follows. There are sections discussing each of the major prejudices: the Standard Model supersymmetry; extra gauge degrees of freedom; composite models; and other possibilities. Each of these sections contains a description of the motivations and characteristics of the new physics to be searched for, followed by a review of the searches made up to now at the CERN p bar p Collider. Finally, it summarizes the lessons to be learnt so far from searches for new physics at the CERN p bar p Collider, and previews some of the prospects for the next rounds of collider searches at CERN and FNAL

  9. The High Time Resolution Universe Pulsar Survey - XII. Galactic plane acceleration search and the discovery of 60 pulsars

    Science.gov (United States)

    Ng, C.; Champion, D. J.; Bailes, M.; Barr, E. D.; Bates, S. D.; Bhat, N. D. R.; Burgay, M.; Burke-Spolaor, S.; Flynn, C. M. L.; Jameson, A.; Johnston, S.; Keith, M. J.; Kramer, M.; Levin, L.; Petroff, E.; Possenti, A.; Stappers, B. W.; van Straten, W.; Tiburzi, C.; Eatough, R. P.; Lyne, A. G.

    2015-07-01

    We present initial results from the low-latitude Galactic plane region of the High Time Resolution Universe pulsar survey conducted at the Parkes 64-m radio telescope. We discuss the computational challenges arising from the processing of the terabyte-sized survey data. Two new radio interference mitigation techniques are introduced, as well as a partially coherent segmented acceleration search algorithm which aims to increase our chances of discovering highly relativistic short-orbit binary systems, covering a parameter space including potential pulsar-black hole binaries. We show that under a constant acceleration approximation, a ratio of data length over orbital period of ≈0.1 results in the highest effectiveness for this search algorithm. From the 50 per cent of data processed thus far, we have redetected 435 previously known pulsars and discovered a further 60 pulsars, two of which are fast-spinning pulsars with periods less than 30 ms. PSR J1101-6424 is a millisecond pulsar whose heavy white dwarf (WD) companion and short spin period of 5.1 ms indicate a rare example of full-recycling via Case A Roche lobe overflow. PSR J1757-27 appears to be an isolated recycled pulsar with a relatively long spin period of 17 ms. In addition, PSR J1244-6359 is a mildly recycled binary system with a heavy WD companion, PSR J1755-25 has a significant orbital eccentricity of 0.09 and PSR J1759-24 is likely to be a long-orbit eclipsing binary with orbital period of the order of tens of years. Comparison of our newly discovered pulsar sample to the known population suggests that they belong to an older population. Furthermore, we demonstrate that our current pulsar detection yield is as expected from population synthesis.

  10. Intermittent search strategies

    Science.gov (United States)

    Bénichou, O.; Loverdo, C.; Moreau, M.; Voituriez, R.

    2011-01-01

    This review examines intermittent target search strategies, which combine phases of slow motion, allowing the searcher to detect the target, and phases of fast motion during which targets cannot be detected. It is first shown that intermittent search strategies are actually widely observed at various scales. At the macroscopic scale, this is, for example, the case of animals looking for food; at the microscopic scale, intermittent transport patterns are involved in a reaction pathway of DNA-binding proteins as well as in intracellular transport. Second, generic stochastic models are introduced, which show that intermittent strategies are efficient strategies that enable the minimization of search time. This suggests that the intrinsic efficiency of intermittent search strategies could justify their frequent observation in nature. Last, beyond these modeling aspects, it is proposed that intermittent strategies could also be used in a broader context to design and accelerate search processes.

  11. Trajectory similarity join in spatial networks

    KAUST Repository

    Shang, Shuo; Chen, Lisi; Wei, Zhewei; Jensen, Christian S.; Zheng, Kai; Kalnis, Panos

    2017-01-01

    With these applications in mind, we provide a purposeful definition of similarity. To enable efficient TS-Join processing on large sets of trajectories, we develop search space pruning techniques and take into account the parallel processing capabilities of modern processors. Specifically, we present a two-phase divide-and-conquer algorithm. For each trajectory, the algorithm first finds similar trajectories. Then it merges the results to achieve a final result. The algorithm exploits an upper bound on the spatiotemporal similarity and a heuristic scheduling strategy for search space pruning. The algorithm's per-trajectory searches are independent of each other and can be performed in parallel, and the merging has constant cost. An empirical study with real data offers insight in the performance of the algorithm and demonstrates that is capable of outperforming a well-designed baseline algorithm by an order of magnitude.

  12. CAS CERN accelerator school: 5. general accelerator physics course. Vol. 2. Proceedings

    International Nuclear Information System (INIS)

    Turner, S.

    1994-01-01

    The fifth CERN Accelerator School (CAS) basic course on General Accelerator Physics was given at the University of Jyvaeskylae, Finland, from 7 to 18 September 1992. Its syllabus was based on the previous similar courses held at Gif-sur-Yvette in 1984, Aarhus 1986, Salamanca 1988 and Juelich 1990, and whose proceedings were published as CERN Reports 85-19, 87-10, 89-05 and 91-04, respectively. However, certain topics were treated in a different way, improved or extended, while new subjects were introduced. As far as the proceedings of this school are concerned the opportunity was taken not only to include the lectures presented but also to select and revise the most appropriate chapters from the previous similar schools. In this way the present volumes constitute a rather complete introduction to all aspects of the design and construction of particle accelerators, including optics, emittance, luminosity, longitudinal and transverse beam dynamics, insertions, chromaticity, transfer lines, resonances, accelerating structures, tune shifts, coasting beams, lifetime, synchrotron radiation, radiation damping, beam-beam effects, diagnostics, cooling, ion and positron sources, RF and vacuum systems, injection and extraction, conventional, permanent and superconducting magnets, cyclotrons, RF linear accelerators, microtrons, as well as applications of particle accelerators (including therapy) and the history of accelerators. See hints under the relevant topics. (orig.)

  13. Linear Accelerator (LINAC)

    Science.gov (United States)

    ... uses microwave technology (similar to that used for radar) to accelerate electrons in a part of the accelerator called the "wave guide," then allows ... risk of accidental exposure is extremely low. top of page This page was ... No Please type your comment or suggestion into the following text ...

  14. Outsourced similarity search on metric data assets

    KAUST Repository

    Yiu, Man Lung; Assent, Ira; Jensen, Christian Sø ndergaard; Kalnis, Panos

    2012-01-01

    for the most similar data objects to a query example. Outsourcing offers the data owner scalability and a low-initial investment. The need for privacy may be due to the data being sensitive (e.g., in medicine), valuable (e.g., in astronomy), or otherwise

  15. Search for Light Dark Matter Produced in a Proton Beam Dump

    Energy Technology Data Exchange (ETDEWEB)

    Thornton, Remington Tyler [Indiana Univ., Bloomington, IN (United States)

    2017-01-01

    Cosmological observations indicate that our universe contains dark matter (DM), yet we have no measurements of its microscopic properties. Whereas the gravitational interaction of DM is well understood, its interaction with the Standard Model is not. Direct detection experiments, the current standard, search for a nuclear recoil interaction and have a low-mass sensitivity edge of order 1 GeV. A path to detect DM with mass below 1 GeV is the use of accelerators producing boosted low-mass DM. Using neutrino detectors to search for low-mass DM is logical due to the similarity of the DM and neutrino signatures in the detector. The MiniBooNE experiment, located at Fermilab on the Booster Neutrino Beamline, has produced the first proton beam-dump light DM search results. Using dark matter scattering from nucleons 90% confidence limits were set over a large parameter space and, to allow tests of other theories, a model independent DM rate was extracted.

  16. Particle accelerator; the Universe machine

    CERN Multimedia

    Yurkewicz, Katie

    2008-01-01

    "In summer 2008, scientists will switch on one of the largest machines in the world to search for the smallest of particle. CERN's Large Hadron Collider particle accelerator has the potential to chagne our understanding of the Universe."

  17. Acceleration of polarized proton beams

    International Nuclear Information System (INIS)

    Roser, T.

    1998-01-01

    The acceleration of polarized beams in circular accelerators is complicated by the numerous depolarizing spin resonances. Using a partial Siberian snake and a rf dipole that ensure stable adiabatic spin motion during acceleration has made it possible to accelerate polarized protons to 25 GeV at the Brookhaven AGS. Full Siberian snakes are being developed for RHIC to make the acceleration of polarized protons to 250 GeV possible. A similar scheme is being studied for the 800 GeV HERA proton accelerator

  18. Search for new physics at LEP 2

    CERN Document Server

    Gross, Eilam

    1997-01-01

    The results of the search for Higgs bosons, Charginos, Neutralinos, Sleptons, Squarks and light Gravitinos with the LEP accelerator at 130-172 GeV center-of-mass energy are briefly described. Prospects for Standard Model Higgs search at higher center-of-mass energies are also given.

  19. Trajectory similarity join in spatial networks

    KAUST Repository

    Shang, Shuo

    2017-09-07

    The matching of similar pairs of objects, called similarity join, is fundamental functionality in data management. We consider the case of trajectory similarity join (TS-Join), where the objects are trajectories of vehicles moving in road networks. Thus, given two sets of trajectories and a threshold θ, the TS-Join returns all pairs of trajectories from the two sets with similarity above θ. This join targets applications such as trajectory near-duplicate detection, data cleaning, ridesharing recommendation, and traffic congestion prediction. With these applications in mind, we provide a purposeful definition of similarity. To enable efficient TS-Join processing on large sets of trajectories, we develop search space pruning techniques and take into account the parallel processing capabilities of modern processors. Specifically, we present a two-phase divide-and-conquer algorithm. For each trajectory, the algorithm first finds similar trajectories. Then it merges the results to achieve a final result. The algorithm exploits an upper bound on the spatiotemporal similarity and a heuristic scheduling strategy for search space pruning. The algorithm\\'s per-trajectory searches are independent of each other and can be performed in parallel, and the merging has constant cost. An empirical study with real data offers insight in the performance of the algorithm and demonstrates that is capable of outperforming a well-designed baseline algorithm by an order of magnitude.

  20. AIR-MRF: Accelerated iterative reconstruction for magnetic resonance fingerprinting.

    Science.gov (United States)

    Cline, Christopher C; Chen, Xiao; Mailhe, Boris; Wang, Qiu; Pfeuffer, Josef; Nittka, Mathias; Griswold, Mark A; Speier, Peter; Nadar, Mariappan S

    2017-09-01

    Existing approaches for reconstruction of multiparametric maps with magnetic resonance fingerprinting (MRF) are currently limited by their estimation accuracy and reconstruction time. We aimed to address these issues with a novel combination of iterative reconstruction, fingerprint compression, additional regularization, and accelerated dictionary search methods. The pipeline described here, accelerated iterative reconstruction for magnetic resonance fingerprinting (AIR-MRF), was evaluated with simulations as well as phantom and in vivo scans. We found that the AIR-MRF pipeline provided reduced parameter estimation errors compared to non-iterative and other iterative methods, particularly at shorter sequence lengths. Accelerated dictionary search methods incorporated into the iterative pipeline reduced the reconstruction time at little cost of quality. Copyright © 2017 Elsevier Inc. All rights reserved.

  1. Pharmacological interventions for acceleration of the onset time of rocuronium: a meta-analysis.

    Science.gov (United States)

    Dong, Jing; Gao, Lingqi; Lu, Wenqing; Xu, Zifeng; Zheng, Jijian

    2014-01-01

    Rocuronium is an acceptable alternative when succinylcholine is contraindicated for facilitating the endotracheal intubation. However, the onset time of rocuronium for good intubation condition is still slower than that condition of succinylcholine. This study systematically investigated the most efficacious pharmacological interventions for accelerating the onset time of rocuronium. Medline, Embase, Cochrane Library databases, www.clinicaltrials.gov, and hand searching from the reference lists of identified papers were searched for randomized controlled trials comparing drug interventions with placebo or another drug to shorten the onset time of rocuronium. Statistical analyses were performed using RevMan5.2 and ADDIS 1.16.5 softwares. Mean differences (MDs) with their 95% confidence intervals (95% CIs) were used to analyze the effects of drug interventions on the onset time of rocuronium. 43 randomized controlled trials with 2,465 patients were analyzed. The average onset time of rocuronium was 102.4±24.9 s. Priming with rocuronium [Mean difference (MD) -21.0 s, 95% confidence interval (95% CI) (-27.6 to -14.3 s)], pretreatment with ephedrine [-22.3 s (-29.1 to -15.5 s)], pretreatment with magnesium sulphate [-28.2 s (-50.9 to -5.6 s)] were all effective in reducing the onset time of rocuronium. Statistical testing of indirect comparisons showed that rocuronium priming, pretreatment with ephedrine, and pretreatment with magnesium sulphate had the similar efficacy. Rocuronium priming, pretreatment with ephedrine, and pretreatment with magnesium sulphate were all effective in accelerating the onset time of rocuronium, and furthermore their efficacies were similar. Considering the convenience and efficacy, priming with rocuronium is recommended for accelerating the onset time of rocuronium. However, more strict clinical trials are still needed to reach a more solid conclusion due to the large heterogeneities exist among different studies.

  2. World Wide Web-based system for the calculation of substituent parameters and substituent similarity searches.

    Science.gov (United States)

    Ertl, P

    1998-02-01

    Easy to use, interactive, and platform-independent WWW-based tools are ideal for development of chemical applications. By using the newly emerging Web technologies such as Java applets and sophisticated scripting, it is possible to deliver powerful molecular processing capabilities directly to the desk of synthetic organic chemists. In Novartis Crop Protection in Basel, a Web-based molecular modelling system has been in use since 1995. In this article two new modules of this system are presented: a program for interactive calculation of important hydrophobic, electronic, and steric properties of organic substituents, and a module for substituent similarity searches enabling the identification of bioisosteric functional groups. Various possible applications of calculated substituent parameters are also discussed, including automatic design of molecules with the desired properties and creation of targeted virtual combinatorial libraries.

  3. Magnetic monopole search experiments

    International Nuclear Information System (INIS)

    Stone, J.L.

    1986-01-01

    Experimental searches for the elusive magnetic monopole have extended over 50 years -- ever since Dirac showed that the existence of isolated magnetic charges could account for the observation of quantized electric charge. Early searches for Dirac's monopole were hampered since there was no indication of the expected monopole mass, velocity, or origin in the theory. Consequently, numerous experiments searched more or less blindly for relativistic low mass monopoles in the cosmic rays and in particle collisions at high energy accelerators. In this paper, the author reviews briefly the monopole properties which are relevant for their detection and summarize current experimental efforts using induction, ionization/excitation, and catalysis techniques

  4. Rayleigh-Taylor mixing with time-dependent acceleration

    Science.gov (United States)

    Abarzhi, Snezhana

    2016-10-01

    We extend the momentum model to describe Rayleigh-Taylor (RT) mixing driven by a time-dependent acceleration. The acceleration is a power-law function of time, similarly to astrophysical and plasma fusion applications. In RT flow the dynamics of a fluid parcel is driven by a balance per unit mass of the rates of momentum gain and loss. We find analytical solutions in the cases of balanced and imbalanced gains and losses, and identify their dependence on the acceleration exponent. The existence is shown of two typical regimes of self-similar RT mixing-acceleration-driven Rayleigh-Taylor-type and dissipation-driven Richtymer-Meshkov-type with the latter being in general non-universal. Possible scenarios are proposed for transitions from the balanced dynamics to the imbalanced self-similar dynamics. Scaling and correlations properties of RT mixing are studied on the basis of dimensional analysis. Departures are outlined of RT dynamics with time-dependent acceleration from canonical cases of homogeneous turbulence as well as blast waves with first and second kind self-similarity. The work is supported by the US National Science Foundation.

  5. Searching for Single Pulses Using Heimdall

    Science.gov (United States)

    Walsh, Gregory; Lynch, Ryan

    2018-01-01

    In radio pulsar surveys, the interstellar medium causes a frequency dependent dispersive delay of a pulsed signal across the observing band. If not corrected, this delay substantially lowers S/N and makes most pulses undetectable. The delay is proportional to an unknown dispersion measure (DM), which must be searched over with many trial values. A number of new, GPU-accelerated codes are now available to optimize this dedispersion task, and to search for transient pulsed radio emission. We report on the use of Heimdall, one such GPU-accelerated tree dedispersion utility, to search for transient radio sources in a Green Bank Telescope survey of the Cygnus Region and North Galactic Plane. The survey is carried out at central frequency of 820 MHz with a goal of finding Fast Radio Bursts, Rotating Radio Transients, young pulsars, and millisecond pulsars. We describe the the survey, data processing pipeline, and follow-up of candidate sources.

  6. Domain similarity based orthology detection.

    Science.gov (United States)

    Bitard-Feildel, Tristan; Kemena, Carsten; Greenwood, Jenny M; Bornberg-Bauer, Erich

    2015-05-13

    Orthologous protein detection software mostly uses pairwise comparisons of amino-acid sequences to assert whether two proteins are orthologous or not. Accordingly, when the number of sequences for comparison increases, the number of comparisons to compute grows in a quadratic order. A current challenge of bioinformatic research, especially when taking into account the increasing number of sequenced organisms available, is to make this ever-growing number of comparisons computationally feasible in a reasonable amount of time. We propose to speed up the detection of orthologous proteins by using strings of domains to characterize the proteins. We present two new protein similarity measures, a cosine and a maximal weight matching score based on domain content similarity, and new software, named porthoDom. The qualities of the cosine and the maximal weight matching similarity measures are compared against curated datasets. The measures show that domain content similarities are able to correctly group proteins into their families. Accordingly, the cosine similarity measure is used inside porthoDom, the wrapper developed for proteinortho. porthoDom makes use of domain content similarity measures to group proteins together before searching for orthologs. By using domains instead of amino acid sequences, the reduction of the search space decreases the computational complexity of an all-against-all sequence comparison. We demonstrate that representing and comparing proteins as strings of discrete domains, i.e. as a concatenation of their unique identifiers, allows a drastic simplification of search space. porthoDom has the advantage of speeding up orthology detection while maintaining a degree of accuracy similar to proteinortho. The implementation of porthoDom is released using python and C++ languages and is available under the GNU GPL licence 3 at http://www.bornberglab.org/pages/porthoda .

  7. Acceleration of magnetized plasma rings

    International Nuclear Information System (INIS)

    Hartman, D.; Eddleman, J.; Hammer, J.H.

    1982-01-01

    One scheme is considered, acceleration of a ring between coaxial electrodes by a B/sub theta/ field as in a coaxial rail-gun. If the electrodes are conical, a ring accelerated towards the apex of the cone undergoes self-similar compression (focussing) during acceleration. Because the allowable acceleration force F/sub a/ = kappa U/sub m//R (kappa - 2 , the accelerating distance for conical electrodes is considerably shortened over that required for coaxial electrodes. In either case however, since the accelerating flux can expand as the ring moves, most of the accelerating field energy can be converted into kinetic energy of the ring leading to high efficiency

  8. Parallel trajectory similarity joins in spatial networks

    KAUST Repository

    Shang, Shuo

    2018-04-04

    The matching of similar pairs of objects, called similarity join, is fundamental functionality in data management. We consider two cases of trajectory similarity joins (TS-Joins), including a threshold-based join (Tb-TS-Join) and a top-k TS-Join (k-TS-Join), where the objects are trajectories of vehicles moving in road networks. Given two sets of trajectories and a threshold θ, the Tb-TS-Join returns all pairs of trajectories from the two sets with similarity above θ. In contrast, the k-TS-Join does not take a threshold as a parameter, and it returns the top-k most similar trajectory pairs from the two sets. The TS-Joins target diverse applications such as trajectory near-duplicate detection, data cleaning, ridesharing recommendation, and traffic congestion prediction. With these applications in mind, we provide purposeful definitions of similarity. To enable efficient processing of the TS-Joins on large sets of trajectories, we develop search space pruning techniques and enable use of the parallel processing capabilities of modern processors. Specifically, we present a two-phase divide-and-conquer search framework that lays the foundation for the algorithms for the Tb-TS-Join and the k-TS-Join that rely on different pruning techniques to achieve efficiency. For each trajectory, the algorithms first find similar trajectories. Then they merge the results to obtain the final result. The algorithms for the two joins exploit different upper and lower bounds on the spatiotemporal trajectory similarity and different heuristic scheduling strategies for search space pruning. Their per-trajectory searches are independent of each other and can be performed in parallel, and the mergings have constant cost. An empirical study with real data offers insight in the performance of the algorithms and demonstrates that they are capable of outperforming well-designed baseline algorithms by an order of magnitude.

  9. Parallel trajectory similarity joins in spatial networks

    KAUST Repository

    Shang, Shuo; Chen, Lisi; Wei, Zhewei; Jensen, Christian S.; Zheng, Kai; Kalnis, Panos

    2018-01-01

    The matching of similar pairs of objects, called similarity join, is fundamental functionality in data management. We consider two cases of trajectory similarity joins (TS-Joins), including a threshold-based join (Tb-TS-Join) and a top-k TS-Join (k-TS-Join), where the objects are trajectories of vehicles moving in road networks. Given two sets of trajectories and a threshold θ, the Tb-TS-Join returns all pairs of trajectories from the two sets with similarity above θ. In contrast, the k-TS-Join does not take a threshold as a parameter, and it returns the top-k most similar trajectory pairs from the two sets. The TS-Joins target diverse applications such as trajectory near-duplicate detection, data cleaning, ridesharing recommendation, and traffic congestion prediction. With these applications in mind, we provide purposeful definitions of similarity. To enable efficient processing of the TS-Joins on large sets of trajectories, we develop search space pruning techniques and enable use of the parallel processing capabilities of modern processors. Specifically, we present a two-phase divide-and-conquer search framework that lays the foundation for the algorithms for the Tb-TS-Join and the k-TS-Join that rely on different pruning techniques to achieve efficiency. For each trajectory, the algorithms first find similar trajectories. Then they merge the results to obtain the final result. The algorithms for the two joins exploit different upper and lower bounds on the spatiotemporal trajectory similarity and different heuristic scheduling strategies for search space pruning. Their per-trajectory searches are independent of each other and can be performed in parallel, and the mergings have constant cost. An empirical study with real data offers insight in the performance of the algorithms and demonstrates that they are capable of outperforming well-designed baseline algorithms by an order of magnitude.

  10. Efficient data retrieval method for similar plasma waveforms in EAST

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Ying, E-mail: liuying-ipp@szu.edu.cn [SZU-CASIPP Joint Laboratory for Applied Plasma, Shenzhen University, Shenzhen 518060 (China); Huang, Jianjun; Zhou, Huasheng; Wang, Fan [SZU-CASIPP Joint Laboratory for Applied Plasma, Shenzhen University, Shenzhen 518060 (China); Wang, Feng [Institute of Plasma Physics Chinese Academy of Sciences, Hefei 230031 (China)

    2016-11-15

    Highlights: • The proposed method is carried out by means of bounding envelope and angle distance. • It allows retrieving for whole similar waveforms of any time length. • In addition, the proposed method is also possible to retrieve subsequences. - Abstract: Fusion research relies highly on data analysis due to its massive-sized database. In the present work, we propose an efficient method for searching and retrieving similar plasma waveforms in Experimental Advanced Superconducting Tokamak (EAST). Based on Piecewise Linear Aggregate Approximation (PLAA) for extracting feature values, the searching process is accomplished in two steps. The first one is coarse searching to narrow down the search space, which is carried out by means of bounding envelope. The second step is fine searching to retrieval similar waveforms, which is implemented by the angle distance. The proposed method is tested in EAST databases and turns out to have good performance in retrieving similar waveforms.

  11. Search predicts and changes patience in intertemporal choice

    Science.gov (United States)

    Johnson, Eric J.

    2017-01-01

    Intertemporal choice impacts many important outcomes, such as decisions about health, education, wealth, and the environment. However, the psychological processes underlying decisions involving outcomes at different points in time remain unclear, limiting opportunities to intervene and improve people’s patience. This research examines information-search strategies used during intertemporal choice and their impact on decisions. In experiment 1, we demonstrate that search strategies vary substantially across individuals. We subsequently identify two distinct search strategies across individuals. Comparative searchers, who compare features across options, discount future options less and are more susceptible to acceleration versus delay framing than integrative searchers, who integrate the features of an option. Experiment 2 manipulates search using an unobtrusive method to establish a causal relationship between strategy and choice, randomly assigning participants to conditions promoting either comparative or integrative search. Again, comparative search promotes greater patience than integrative search. Additionally, when participants adopt a comparative search strategy, they also exhibit greater effects of acceleration versus delay framing. Although most participants reported that the manipulation did not change their behavior, promoting comparative search decreased discounting of future rewards substantially and speeded patient choices. These findings highlight the central role that heterogeneity in psychological processes plays in shaping intertemporal choice. Importantly, these results indicate that theories that ignore variability in search strategies may be inadvertently aggregating over different subpopulations that use very different processes. The findings also inform interventions in choice architecture to increase patience and improve consumer welfare. PMID:29078303

  12. Personalized Search

    CERN Document Server

    AUTHOR|(SzGeCERN)749939

    2015-01-01

    As the volume of electronically available information grows, relevant items become harder to find. This work presents an approach to personalizing search results in scientific publication databases. This work focuses on re-ranking search results from existing search engines like Solr or ElasticSearch. This work also includes the development of Obelix, a new recommendation system used to re-rank search results. The project was proposed and performed at CERN, using the scientific publications available on the CERN Document Server (CDS). This work experiments with re-ranking using offline and online evaluation of users and documents in CDS. The experiments conclude that the personalized search result outperform both latest first and word similarity in terms of click position in the search result for global search in CDS.

  13. The Application of Similar Image Retrieval in Electronic Commerce

    Science.gov (United States)

    Hu, YuPing; Yin, Hua; Han, Dezhi; Yu, Fei

    2014-01-01

    Traditional online shopping platform (OSP), which searches product information by keywords, faces three problems: indirect search mode, large search space, and inaccuracy in search results. For solving these problems, we discuss and research the application of similar image retrieval in electronic commerce. Aiming at improving the network customers' experience and providing merchants with the accuracy of advertising, we design a reasonable and extensive electronic commerce application system, which includes three subsystems: image search display subsystem, image search subsystem, and product information collecting subsystem. This system can provide seamless connection between information platform and OSP, on which consumers can automatically and directly search similar images according to the pictures from information platform. At the same time, it can be used to provide accuracy of internet marketing for enterprises. The experiment shows the efficiency of constructing the system. PMID:24883411

  14. The Application of Similar Image Retrieval in Electronic Commerce

    Directory of Open Access Journals (Sweden)

    YuPing Hu

    2014-01-01

    Full Text Available Traditional online shopping platform (OSP, which searches product information by keywords, faces three problems: indirect search mode, large search space, and inaccuracy in search results. For solving these problems, we discuss and research the application of similar image retrieval in electronic commerce. Aiming at improving the network customers’ experience and providing merchants with the accuracy of advertising, we design a reasonable and extensive electronic commerce application system, which includes three subsystems: image search display subsystem, image search subsystem, and product information collecting subsystem. This system can provide seamless connection between information platform and OSP, on which consumers can automatically and directly search similar images according to the pictures from information platform. At the same time, it can be used to provide accuracy of internet marketing for enterprises. The experiment shows the efficiency of constructing the system.

  15. The application of similar image retrieval in electronic commerce.

    Science.gov (United States)

    Hu, YuPing; Yin, Hua; Han, Dezhi; Yu, Fei

    2014-01-01

    Traditional online shopping platform (OSP), which searches product information by keywords, faces three problems: indirect search mode, large search space, and inaccuracy in search results. For solving these problems, we discuss and research the application of similar image retrieval in electronic commerce. Aiming at improving the network customers' experience and providing merchants with the accuracy of advertising, we design a reasonable and extensive electronic commerce application system, which includes three subsystems: image search display subsystem, image search subsystem, and product information collecting subsystem. This system can provide seamless connection between information platform and OSP, on which consumers can automatically and directly search similar images according to the pictures from information platform. At the same time, it can be used to provide accuracy of internet marketing for enterprises. The experiment shows the efficiency of constructing the system.

  16. Applications of accelerator mass spectrometry to nuclear physics and astrophysics

    International Nuclear Information System (INIS)

    Guo Zhiyu; Zhang Chuan

    2002-01-01

    As an ultra high sensitive analyzing method, accelerator mass spectrometry is playing an important role in the studies of nuclear physics and astrophysics. The accelerator mass spectrometry (AMS) applications in searching for violation of Pauli exclusion principle and study on supernovae are discussed as examples

  17. FPGA Hardware Acceleration of a Phylogenetic Tree Reconstruction with Maximum Parsimony Algorithm

    OpenAIRE

    BLOCK, Henry; MARUYAMA, Tsutomu

    2017-01-01

    In this paper, we present an FPGA hardware implementation for a phylogenetic tree reconstruction with a maximum parsimony algorithm. We base our approach on a particular stochastic local search algorithm that uses the Progressive Neighborhood and the Indirect Calculation of Tree Lengths method. This method is widely used for the acceleration of the phylogenetic tree reconstruction algorithm in software. In our implementation, we define a tree structure and accelerate the search by parallel an...

  18. Application of 3D Zernike descriptors to shape-based ligand similarity searching.

    Science.gov (United States)

    Venkatraman, Vishwesh; Chakravarthy, Padmasini Ramji; Kihara, Daisuke

    2009-12-17

    The identification of promising drug leads from a large database of compounds is an important step in the preliminary stages of drug design. Although shape is known to play a key role in the molecular recognition process, its application to virtual screening poses significant hurdles both in terms of the encoding scheme and speed. In this study, we have examined the efficacy of the alignment independent three-dimensional Zernike descriptor (3DZD) for fast shape based similarity searching. Performance of this approach was compared with several other methods including the statistical moments based ultrafast shape recognition scheme (USR) and SIMCOMP, a graph matching algorithm that compares atom environments. Three benchmark datasets are used to thoroughly test the methods in terms of their ability for molecular classification, retrieval rate, and performance under the situation that simulates actual virtual screening tasks over a large pharmaceutical database. The 3DZD performed better than or comparable to the other methods examined, depending on the datasets and evaluation metrics used. Reasons for the success and the failure of the shape based methods for specific cases are investigated. Based on the results for the three datasets, general conclusions are drawn with regard to their efficiency and applicability. The 3DZD has unique ability for fast comparison of three-dimensional shape of compounds. Examples analyzed illustrate the advantages and the room for improvements for the 3DZD.

  19. Rayleigh-Taylor mixing with space-dependent acceleration

    Science.gov (United States)

    Abarzhi, Snezhana

    2016-11-01

    We extend the momentum model to describe Rayleigh-Taylor (RT) mixing driven by a space-dependent acceleration. The acceleration is a power-law function of space coordinate, similarly to astrophysical and plasma fusion applications. In RT flow the dynamics of a fluid parcel is driven by a balance per unit mass of the rates of momentum gain and loss. We find analytical solutions in the cases of balanced and imbalanced gains and losses, and identify their dependence on the acceleration exponent. The existence is shown of two typical sub-regimes of self-similar RT mixing - the acceleration-driven Rayleigh-Taylor-type mixing and dissipation-driven Richtymer-Meshkov-type mixing with the latter being in general non-universal. Possible scenarios are proposed for transitions from the balanced dynamics to the imbalanced self-similar dynamics. Scaling and correlations properties of RT mixing are studied on the basis of dimensional analysis. Departures are outlined of RT dynamics with space-dependent acceleration from canonical cases of homogeneous turbulence as well as blast waves with first and second kind self-similarity. The work is supported by the US National Science Foundation.

  20. Studies of accelerated compact toruses

    International Nuclear Information System (INIS)

    Hartman, C.W.; Eddleman, J.; Hammer, J.H.

    1983-01-01

    In an earlier publication we considered acceleration of plasma rings (Compact Torus). Several possible accelerator configurations were suggested and the possibility of focusing the accelerated rings was discussed. In this paper we consider one scheme, acceleration of a ring between coaxial electrodes by a B/sub theta/ field as in a coaxial rail-gun. If the electrodes are conical, a ring accelerated towards the apex of the cone undergoes self-similar compression (focusing) during acceleration. Because the allowable acceleration force, F/sub a/ = kappaU/sub m//R where (kappa - 2 , the accelerating distance for conical electrodes is considerably shortened over that required for coaxial electrodes. In either case, however, since the accelerating flux can expand as the ring moves, most of the accelerating field energy can be converted into kinetic energy of the ring leading to high efficiency

  1. A Hybrid Model Ranking Search Result for Research Paper Searching on Social Bookmarking

    Directory of Open Access Journals (Sweden)

    pijitra jomsri

    2015-11-01

    Full Text Available Social bookmarking and publication sharing systems are essential tools for web resource discovery. The performance and capabilities of search results from research paper bookmarking system are vital. Many researchers use social bookmarking for searching papers related to their topics of interest. This paper proposes a combination of similarity based indexing “tag title and abstract” and static ranking to improve search results. In this particular study, the year of the published paper and type of research paper publication are combined with similarity ranking called (HybridRank. Different weighting scores are employed. The retrieval performance of these weighted combination rankings are evaluated using mean values of NDCG. The results suggest that HybridRank and similarity rank with weight 75:25 has the highest NDCG scores. From the preliminary result of experiment, the combination ranking technique provide more relevant research paper search results. Furthermore the chosen heuristic ranking can improve the efficiency of research paper searching on social bookmarking websites.

  2. Motivation and short-term memory in visual search: Attention's accelerator revisited.

    Science.gov (United States)

    Schneider, Daniel; Bonmassar, Claudia; Hickey, Clayton

    2018-05-01

    A cue indicating the possibility of cash reward will cause participants to perform memory-based visual search more efficiently. A recent study has suggested that this performance benefit might reflect the use of multiple memory systems: when needed, participants may maintain the to-be-remembered object in both long-term and short-term visual memory, with this redundancy benefitting target identification during search (Reinhart, McClenahan & Woodman, 2016). Here we test this compelling hypothesis. We had participants complete a memory-based visual search task involving a reward cue that either preceded presentation of the to-be-remembered target (pre-cue) or followed it (retro-cue). Following earlier work, we tracked memory representation using two components of the event-related potential (ERP): the contralateral delay activity (CDA), reflecting short-term visual memory, and the anterior P170, reflecting long-term storage. We additionally tracked attentional preparation and deployment in the contingent negative variation (CNV) and N2pc, respectively. Results show that only the reward pre-cue impacted our ERP indices of memory. However, both types of cue elicited a robust CNV, reflecting an influence on task preparation, both had equivalent impact on deployment of attention to the target, as indexed in the N2pc, and both had equivalent impact on visual search behavior. Reward prospect thus has an influence on memory-guided visual search, but this does not appear to be necessarily mediated by a change in the visual memory representations indexed by CDA. Our results demonstrate that the impact of motivation on search is not a simple product of improved memory for target templates. Copyright © 2017 Elsevier Ltd. All rights reserved.

  3. Density-based similarity measures for content based search

    Energy Technology Data Exchange (ETDEWEB)

    Hush, Don R [Los Alamos National Laboratory; Porter, Reid B [Los Alamos National Laboratory; Ruggiero, Christy E [Los Alamos National Laboratory

    2009-01-01

    We consider the query by multiple example problem where the goal is to identify database samples whose content is similar to a coUection of query samples. To assess the similarity we use a relative content density which quantifies the relative concentration of the query distribution to the database distribution. If the database distribution is a mixture of the query distribution and a background distribution then it can be shown that database samples whose relative content density is greater than a particular threshold {rho} are more likely to have been generated by the query distribution than the background distribution. We describe an algorithm for predicting samples with relative content density greater than {rho} that is computationally efficient and possesses strong performance guarantees. We also show empirical results for applications in computer network monitoring and image segmentation.

  4. Does linear separability really matter? Complex visual search is explained by simple search

    Science.gov (United States)

    Vighneshvel, T.; Arun, S. P.

    2013-01-01

    Visual search in real life involves complex displays with a target among multiple types of distracters, but in the laboratory, it is often tested using simple displays with identical distracters. Can complex search be understood in terms of simple searches? This link may not be straightforward if complex search has emergent properties. One such property is linear separability, whereby search is hard when a target cannot be separated from its distracters using a single linear boundary. However, evidence in favor of linear separability is based on testing stimulus configurations in an external parametric space that need not be related to their true perceptual representation. We therefore set out to assess whether linear separability influences complex search at all. Our null hypothesis was that complex search performance depends only on classical factors such as target-distracter similarity and distracter homogeneity, which we measured using simple searches. Across three experiments involving a variety of artificial and natural objects, differences between linearly separable and nonseparable searches were explained using target-distracter similarity and distracter heterogeneity. Further, simple searches accurately predicted complex search regardless of linear separability (r = 0.91). Our results show that complex search is explained by simple search, refuting the widely held belief that linear separability influences visual search. PMID:24029822

  5. Search predicts and changes patience in intertemporal choice.

    Science.gov (United States)

    Reeck, Crystal; Wall, Daniel; Johnson, Eric J

    2017-11-07

    Intertemporal choice impacts many important outcomes, such as decisions about health, education, wealth, and the environment. However, the psychological processes underlying decisions involving outcomes at different points in time remain unclear, limiting opportunities to intervene and improve people's patience. This research examines information-search strategies used during intertemporal choice and their impact on decisions. In experiment 1, we demonstrate that search strategies vary substantially across individuals. We subsequently identify two distinct search strategies across individuals. Comparative searchers, who compare features across options, discount future options less and are more susceptible to acceleration versus delay framing than integrative searchers, who integrate the features of an option. Experiment 2 manipulates search using an unobtrusive method to establish a causal relationship between strategy and choice, randomly assigning participants to conditions promoting either comparative or integrative search. Again, comparative search promotes greater patience than integrative search. Additionally, when participants adopt a comparative search strategy, they also exhibit greater effects of acceleration versus delay framing. Although most participants reported that the manipulation did not change their behavior, promoting comparative search decreased discounting of future rewards substantially and speeded patient choices. These findings highlight the central role that heterogeneity in psychological processes plays in shaping intertemporal choice. Importantly, these results indicate that theories that ignore variability in search strategies may be inadvertently aggregating over different subpopulations that use very different processes. The findings also inform interventions in choice architecture to increase patience and improve consumer welfare. Copyright © 2017 the Author(s). Published by PNAS.

  6. Results from non-accelerator experiments

    International Nuclear Information System (INIS)

    Wilkerson, J.F.

    1992-01-01

    The diversity of non-accelerator experiments is at first look both dazzling and even daunting. However, nearly all of these experiments strive to attain the same goal, to search for new physics, beyond the current Standard Model. These measurements are also unified in the fact that their results are often dominated by systematic uncertainties. This review necessarily covers only a limited subset of non-accelerator experiments, and will concentrate on the experimental areas where there has been significant recent progress. The topics reviewed include neutrino mazes, double beta decay, solar neutrino, and long-baseline neutrino oscillation measurements

  7. Application of 3D Zernike descriptors to shape-based ligand similarity searching

    Directory of Open Access Journals (Sweden)

    Venkatraman Vishwesh

    2009-12-01

    Full Text Available Abstract Background The identification of promising drug leads from a large database of compounds is an important step in the preliminary stages of drug design. Although shape is known to play a key role in the molecular recognition process, its application to virtual screening poses significant hurdles both in terms of the encoding scheme and speed. Results In this study, we have examined the efficacy of the alignment independent three-dimensional Zernike descriptor (3DZD for fast shape based similarity searching. Performance of this approach was compared with several other methods including the statistical moments based ultrafast shape recognition scheme (USR and SIMCOMP, a graph matching algorithm that compares atom environments. Three benchmark datasets are used to thoroughly test the methods in terms of their ability for molecular classification, retrieval rate, and performance under the situation that simulates actual virtual screening tasks over a large pharmaceutical database. The 3DZD performed better than or comparable to the other methods examined, depending on the datasets and evaluation metrics used. Reasons for the success and the failure of the shape based methods for specific cases are investigated. Based on the results for the three datasets, general conclusions are drawn with regard to their efficiency and applicability. Conclusion The 3DZD has unique ability for fast comparison of three-dimensional shape of compounds. Examples analyzed illustrate the advantages and the room for improvements for the 3DZD.

  8. Recent trends in particle accelerator radiation safety

    International Nuclear Information System (INIS)

    Ohnesorge, W.F.; Butler, H.M.

    1974-01-01

    The use of particle accelerators in applied and research activities continues to expand, bringing new machines with higher energy and current capabilities which create radiation safety problems not commonly encountered before. An overview is given of these increased ionizing radiation hazards, along with a discussion of some of the new techniques required in evaluating and controlling them. A computer search of the literature provided a relatively comprehensive list of publications describing accelerator radiation safety problems and related subjects

  9. Similar muscles contribute to horizontal and vertical acceleration of center of mass in forward and backward walking: implications for neural control

    Science.gov (United States)

    Jansen, Karen; De Groote, Friedl; Massaad, Firas; Meyns, Pieter; Jonkers, Ilse

    2012-01-01

    Leg kinematics during backward walking (BW) are very similar to the time-reversed kinematics during forward walking (FW). This suggests that the underlying muscle activation pattern could originate from a simple time reversal, as well. Experimental electromyography studies have confirmed that this is the case for some muscles. Furthermore, it has been hypothesized that muscles showing a time reversal should also exhibit a reversal in function [from accelerating the body center of mass (COM) to decelerating]. However, this has not yet been verified in simulation studies. In the present study, forward simulations were used to study the effects of muscles on the acceleration of COM in FW and BW. We found that a reversal in function was indeed present in the muscle control of the horizontal movement of COM (e.g., tibialis anterior and gastrocnemius). In contrast, muscles' antigravity contributions maintained their function for both directions of movement. An important outcome of the present study is therefore that similar muscles can be used to achieve opposite functional demands at the level of control of the COM when walking direction is reversed. However, some muscles showed direction-specific contributions (i.e., dorsiflexors). We concluded that the changes in muscle contributions imply that a simple time reversal would be insufficient to produce BW from FW. We therefore propose that BW utilizes extra elements, presumably supraspinal, in addition to a common spinal drive. These additions are needed for propulsion and require a partial reconfiguration of lower level common networks. PMID:22423005

  10. The Search for Stable, Massive, Elementary Particles

    International Nuclear Information System (INIS)

    Kim, Peter C.

    2001-01-01

    In this paper we review the experimental and observational searches for stable, massive, elementary particles other than the electron and proton. The particles may be neutral, may have unit charge or may have fractional charge. They may interact through the strong, electromagnetic, weak or gravitational forces or through some unknown force. The purpose of this review is to provide a guide for future searches--what is known, what is not known, and what appear to be the most fruitful areas for new searches. A variety of experimental and observational methods such as accelerator experiments, cosmic ray studies, searches for exotic particles in bulk matter and searches using astrophysical observations is included in this review

  11. Plasma based accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Caldwell, Allen [Max-Planck-Institut fuer Physik, Muenchen (Germany)

    2015-05-01

    The concept of laser-induced plasma wakefields as a technique to accelerate charged particles was introduced 35 years ago as a means to go beyond the accelerating gradients possible with metallic cavities supporting radio frequency electromagnetic fields. Significant developments in laser technology have made possible the pulse intensity needed to realize this concept, and rapid progress is now underway in the realization of laser-driven plasma wakefield acceleration. It has also been realized that similar accelerating gradients can be produced by particle beams propagating in plasmas, and experimental programs have also been undertaken to study this possibility. Positive results have been achieved with electron-driven plasma wakefields, and a demonstration experiment with proton-driven wakefields is under construction at CERN. The concepts behind these different schemes and their pros and cons are described, as well as the experimental results achieved. An outlook for future practical uses of plasma based accelerators will also be given.

  12. Accelerated convergence and robust asymptotic regression of the Gumbel scale parameter for gapped sequence alignment

    International Nuclear Information System (INIS)

    Park, Yonil; Sheetlin, Sergey; Spouge, John L

    2005-01-01

    Searches through biological databases provide the primary motivation for studying sequence alignment statistics. Other motivations include physical models of annealing processes or mathematical similarities to, e.g., first-passage percolation and interacting particle systems. Here, we investigate sequence alignment statistics, partly to explore two general mathematical methods. First, we model the global alignment of random sequences heuristically with Markov additive processes. In sequence alignment, the heuristic suggests a numerical acceleration scheme for simulating an important asymptotic parameter (the Gumbel scale parameter λ). The heuristic might apply to similar mathematical theories. Second, we extract the asymptotic parameter λ from simulation data with the statistical technique of robust regression. Robust regression is admirably suited to 'asymptotic regression' and deserves to be better known for it

  13. CAS CERN Accelerator School: Fourth general accelerator physics course

    International Nuclear Information System (INIS)

    Turner, S.

    1991-01-01

    The fourth CERN Accelerator School (CAS) basic course on General Accelerator Physics was given at KFA, Juelich, from 17 to 28 September 1990. Its syllabus was based on the previous similar courses held at Gif-sur-Yvette in 1984, Aarhus 1986, and Salamanca 1988, and whose proceedings were published as CERN Reports 85-19, 87-10, and 89-05, respectively. However, certain topics were treated in a different way, improved or extended, while new subjects were introduced. All of these appear in the present proceedings, which include lectures or seminars on the history and applications of accelerators, phase space and emittance, chromaticity, beam-beam effects, synchrotron radiation, radiation damping, tune measurement, transition, electron cooling, the designs of superconducting magnets, ring lattices, conventional RF cavities and ring RF systems, and an introduction to cyclotrons. (orig.)

  14. Non-SUSY Searches at the Tevatron

    International Nuclear Information System (INIS)

    Strologas, John

    2011-01-01

    We present recent results from searches for new physics beyond supersymmetry performed at the Tevatron accelerator at Fermilab. The CDF and D0 analyses presented here utilized data of integrated luminosity up to 6 fb -1 . We cover leptonic and bosonic resonances interpreted in the Randall-Sundrum graviton and new-boson models, rare final states, and the search for vector-like quarks. The search for new phenomena beyond the weak-scale supersymmetry is a vital part of the Fermilab program. Both CDF and D0 experiments at the Tevatron collider actively look for signals not expected by the standard model (SM) or minimal supersymmetric models. The searches can be sorted in three categories: (a) searches for generic resonances that can be interpreted in several new-physics models; (b) searches for exotic combinations of final-state objects or abnormal kinematics (not necessarily predicted by current theories); and (c) model-dependent searches that test a particular theory. We present here latest results from all these categories: searches for new dilepton and diboson resonances (interpreted as gravitons and new gauge bosons), searches for anomalous γ + E T + X production, and searches for vector-like quarks.

  15. Custom Search Engines: Tools & Tips

    Science.gov (United States)

    Notess, Greg R.

    2008-01-01

    Few have the resources to build a Google or Yahoo! from scratch. Yet anyone can build a search engine based on a subset of the large search engines' databases. Use Google Custom Search Engine or Yahoo! Search Builder or any of the other similar programs to create a vertical search engine targeting sites of interest to users. The basic steps to…

  16. In-Storage Embedded Accelerator for Sparse Pattern Processing

    OpenAIRE

    Jun, Sang-Woo; Nguyen, Huy T.; Gadepally, Vijay N.; Arvind

    2016-01-01

    We present a novel architecture for sparse pattern processing, using flash storage with embedded accelerators. Sparse pattern processing on large data sets is the essence of applications such as document search, natural language processing, bioinformatics, subgraph matching, machine learning, and graph processing. One slice of our prototype accelerator is capable of handling up to 1TB of data, and experiments show that it can outperform C/C++ software solutions on a 16-core system at a fracti...

  17. Evolutionary optimization methods for accelerator design

    Science.gov (United States)

    Poklonskiy, Alexey A.

    Many problems from the fields of accelerator physics and beam theory can be formulated as optimization problems and, as such, solved using optimization methods. Despite growing efficiency of the optimization methods, the adoption of modern optimization techniques in these fields is rather limited. Evolutionary Algorithms (EAs) form a relatively new and actively developed optimization methods family. They possess many attractive features such as: ease of the implementation, modest requirements on the objective function, a good tolerance to noise, robustness, and the ability to perform a global search efficiently. In this work we study the application of EAs to problems from accelerator physics and beam theory. We review the most commonly used methods of unconstrained optimization and describe the GATool, evolutionary algorithm and the software package, used in this work, in detail. Then we use a set of test problems to assess its performance in terms of computational resources, quality of the obtained result, and the tradeoff between them. We justify the choice of GATool as a heuristic method to generate cutoff values for the COSY-GO rigorous global optimization package for the COSY Infinity scientific computing package. We design the model of their mutual interaction and demonstrate that the quality of the result obtained by GATool increases as the information about the search domain is refined, which supports the usefulness of this model. We Giscuss GATool's performance on the problems suffering from static and dynamic noise and study useful strategies of GATool parameter tuning for these and other difficult problems. We review the challenges of constrained optimization with EAs and methods commonly used to overcome them. We describe REPA, a new constrained optimization method based on repairing, in exquisite detail, including the properties of its two repairing techniques: REFIND and REPROPT. We assess REPROPT's performance on the standard constrained

  18. Data mining technique for fast retrieval of similar waveforms in Fusion massive databases

    International Nuclear Information System (INIS)

    Vega, J.; Pereira, A.; Portas, A.; Dormido-Canto, S.; Farias, G.; Dormido, R.; Sanchez, J.; Duro, N.; Santos, M.; Sanchez, E.; Pajares, G.

    2008-01-01

    Fusion measurement systems generate similar waveforms for reproducible behavior. A major difficulty related to data analysis is the identification, in a rapid and automated way, of a set of discharges with comparable behaviour, i.e. discharges with 'similar' waveforms. Here we introduce a new technique for rapid searching and retrieval of 'similar' signals. The approach consists of building a classification system that avoids traversing the whole database looking for similarities. The classification system diminishes the problem dimensionality (by means of waveform feature extraction) and reduces the searching space to just the most probable 'similar' waveforms (clustering techniques). In the searching procedure, the input waveform is classified in any of the existing clusters. Then, a similarity measure is computed between the input signal and all cluster elements in order to identify the most similar waveforms. The inner product of normalized vectors is used as the similarity measure as it allows the searching process to be independent of signal gain and polarity. This development has been applied recently to TJ-II stellarator databases and has been integrated into its remote participation system

  19. Emittance measurements from the LLUMC proton accelerator

    International Nuclear Information System (INIS)

    Coutrakon, G.; Gillespie, G.H.; Hubbard, J.; Sanders, E.

    2005-01-01

    A new method of calculating beam emittances at the extraction point of a particle accelerator is presented. The technique uses the optimization programs NPSOL and MINOS developed at Stanford University in order to determine the initial values of beam size, divergence and correlation parameters (i.e. beam sigma matrix, σ ij ) that best fit measured beam parameters. These σ ij elements are then used to compute the Twiss parameters α, β, and the phase space area, ε, of the beam at the extraction point. Beam size measurements in X and Y throughout the transport line were input to the optimizer along with the magnetic elements of bends, quads, and drifts. The σ ij parameters were optimized at the accelerator's extraction point by finding the best agreement between these measured beam sizes and those predicted by TRANSPORT. This expands upon a previous study in which a 'trial and error' technique was used instead of the optimizer software, and which yielded similar results. The Particle Beam Optics Laboratory (PBO Lab TM ) program used for this paper integrates particle beam optics and other codes into a single intuitive graphically-based computing environment. This new software provides a seamless interface between the NPSOL and MINOS optimizer and TRANSPORT calculations. The results of these emittance searches are presented here for the eight clinical energies between 70 and 250 MeV currently being used at LLUMC

  20. Data mining technique for fast retrieval of similar waveforms in Fusion massive databases

    Energy Technology Data Exchange (ETDEWEB)

    Vega, J. [Asociacion EURATOM/CIEMAT Para Fusion, Madrid (Spain)], E-mail: jesus.vega@ciemat.es; Pereira, A.; Portas, A. [Asociacion EURATOM/CIEMAT Para Fusion, Madrid (Spain); Dormido-Canto, S.; Farias, G.; Dormido, R.; Sanchez, J.; Duro, N. [Departamento de Informatica y Automatica, UNED, Madrid (Spain); Santos, M. [Departamento de Arquitectura de Computadores y Automatica, UCM, Madrid (Spain); Sanchez, E. [Asociacion EURATOM/CIEMAT Para Fusion, Madrid (Spain); Pajares, G. [Departamento de Arquitectura de Computadores y Automatica, UCM, Madrid (Spain)

    2008-01-15

    Fusion measurement systems generate similar waveforms for reproducible behavior. A major difficulty related to data analysis is the identification, in a rapid and automated way, of a set of discharges with comparable behaviour, i.e. discharges with 'similar' waveforms. Here we introduce a new technique for rapid searching and retrieval of 'similar' signals. The approach consists of building a classification system that avoids traversing the whole database looking for similarities. The classification system diminishes the problem dimensionality (by means of waveform feature extraction) and reduces the searching space to just the most probable 'similar' waveforms (clustering techniques). In the searching procedure, the input waveform is classified in any of the existing clusters. Then, a similarity measure is computed between the input signal and all cluster elements in order to identify the most similar waveforms. The inner product of normalized vectors is used as the similarity measure as it allows the searching process to be independent of signal gain and polarity. This development has been applied recently to TJ-II stellarator databases and has been integrated into its remote participation system.

  1. Linear accelerator accelerating module to suppress back-acceleration of field-emitted particles

    Science.gov (United States)

    Benson, Stephen V.; Marhauser, Frank; Douglas, David R.; Ament, Lucas J. P.

    2017-12-05

    A method for the suppression of upstream-directed field emission in RF accelerators. The method is not restricted to a certain number of cavity cells, but requires similar operating field levels in all cavities to efficiently annihilate the once accumulated energy. Such a field balance is desirable to minimize dynamic RF losses, but not necessarily achievable in reality depending on individual cavity performance, such as early Q.sub.0-drop or quench field. The method enables a significant energy reduction for upstream-directed electrons within a relatively short distance. As a result of the suppression of upstream-directed field emission, electrons will impact surfaces at rather low energies leading to reduction of dark current and less issues with heating and damage of accelerator components as well as radiation levels including neutron generation and thus radio-activation.

  2. Radiative damping in plasma-based accelerators

    Directory of Open Access Journals (Sweden)

    I. Yu. Kostyukov

    2012-11-01

    Full Text Available The electrons accelerated in a plasma-based accelerator undergo betatron oscillations and emit synchrotron radiation. The energy loss to synchrotron radiation may seriously affect electron acceleration. The electron dynamics under combined influence of the constant accelerating force and the classical radiation reaction force is studied. It is shown that electron acceleration cannot be limited by radiation reaction. If initially the accelerating force was stronger than the radiation reaction force, then the electron acceleration is unlimited. Otherwise the electron is decelerated by radiative damping up to a certain instant of time and then accelerated without limits. It is shown that regardless of the initial conditions the infinite-time asymptotic behavior of an electron is governed by a self-similar solution providing that the radiative damping becomes exactly equal to 2/3 of the accelerating force. The relative energy spread induced by the radiative damping decreases with time in the infinite-time limit. The multistage schemes operating in the asymptotic acceleration regime when electron dynamics is determined by the radiation reaction are discussed.

  3. Remarks on search methods for stable, massive, elementary particles

    International Nuclear Information System (INIS)

    Perl, Martin L.

    2001-01-01

    This paper was presented at the 69th birthday celebration of Professor Eugene Commins, honoring his research achievements. These remarks are about the experimental techniques used in the search for new stable, massive particles, particles at least as massive as the electron. A variety of experimental methods such as accelerator experiments, cosmic ray studies, searches for halo particles in the galaxy and searches for exotic particles in bulk matter are described. A summary is presented of the measured limits on the existence of new stable, massive particle

  4. Protein search for multiple targets on DNA

    Energy Technology Data Exchange (ETDEWEB)

    Lange, Martin [Johannes Gutenberg University, Mainz 55122 (Germany); Department of Chemistry, Rice University, Houston, Texas 77005 (United States); Kochugaeva, Maria [Department of Chemistry, Rice University, Houston, Texas 77005 (United States); Kolomeisky, Anatoly B., E-mail: tolya@rice.edu [Department of Chemistry, Rice University, Houston, Texas 77005 (United States); Center for Theoretical Biological Physics, Rice University, Houston, Texas 77005 (United States)

    2015-09-14

    Protein-DNA interactions are crucial for all biological processes. One of the most important fundamental aspects of these interactions is the process of protein searching and recognizing specific binding sites on DNA. A large number of experimental and theoretical investigations have been devoted to uncovering the molecular description of these phenomena, but many aspects of the mechanisms of protein search for the targets on DNA remain not well understood. One of the most intriguing problems is the role of multiple targets in protein search dynamics. Using a recently developed theoretical framework we analyze this question in detail. Our method is based on a discrete-state stochastic approach that takes into account most relevant physical-chemical processes and leads to fully analytical description of all dynamic properties. Specifically, systems with two and three targets have been explicitly investigated. It is found that multiple targets in most cases accelerate the search in comparison with a single target situation. However, the acceleration is not always proportional to the number of targets. Surprisingly, there are even situations when it takes longer to find one of the multiple targets in comparison with the single target. It depends on the spatial position of the targets, distances between them, average scanning lengths of protein molecules on DNA, and the total DNA lengths. Physical-chemical explanations of observed results are presented. Our predictions are compared with experimental observations as well as with results from a continuum theory for the protein search. Extensive Monte Carlo computer simulations fully support our theoretical calculations.

  5. Accelerator technology in tokamaks

    International Nuclear Information System (INIS)

    Kustom, R.L.

    1977-01-01

    This article presents the similarities in the technology required for high energy accelerators and tokamak fusion devices. The tokamak devices and R and D programs described in the text represent only a fraction of the total fusion program. The technological barriers to producing successful, economical tokamak fusion power plants are as many as the plasma physics problems to be overcome. With the present emphasis on energy problems in this country and elsewhere, it is very likely that fusion technology related R and D programs will vigorously continue; and since high energy accelerator technology has so much in common with fusion technology, more scientists from the accelerator community are likely to be attracted to fusion problems

  6. Applications of accelerator mass spectrometry: advances and innovation

    International Nuclear Information System (INIS)

    Fifield, L.K.

    2004-01-01

    Emerging trends in the applications of accelerator mass spectrometry (AMS) are identified and illustrated with specific examples. Areas of application covered include rapid landscape evolution, calibration of the radiocarbon time scale, compound-specific radiocarbon studies, tracing of nuclear discharges, and searches for extraterrestrial isotopes

  7. Strange quark matter in the Universe and accelerator nuclear beams

    International Nuclear Information System (INIS)

    Okonov, Eh.

    1995-01-01

    An almost symmetric mixture of u, d and s-quarks - Strange Quark Matter (SQM) is strongly argued to be the ground and absolutely stable of the matter. Astrophysical objects, supposed to be the SQM states, could be formed as the result of the Big Bang (in the early Universe) and the conversion of neutron stars into strange ones. Such objects are considered to be favourable candidates as black holes. The unique possibility to produce the SQM under terrestrial conditions (at accelerator laboratories) are violent relativistic nucleus-nucleus collisions so called 'little big bang'. The expected singulares of SQM are reviewed which could be revealed from astrophysical observations of peculiarities of large SQM objects as well as from accelerator experiments with searching smaller SQM states including the simplest one - metastable six-quark H dihyperon. The first results of the Dubna search experiments, with considerable heating of matter and formation a dense strangeness abundant fireball (mixed phase?) in central nuclear collisions, is presented. Under these favourable conditions a candidate for H dihyperon is observed and an upper limit of production cross sections of this SQM state is estimated. Some prospects and advantages of further searches for light SQM states, using the JINR new superconducting accelerator - Nuclotron with energy 5-6 GeV per nucleon, are briefly outlined. 19 refs., 7 figs

  8. Textual and chemical information processing: different domains but similar algorithms

    Directory of Open Access Journals (Sweden)

    Peter Willett

    2000-01-01

    Full Text Available This paper discusses the extent to which algorithms developed for the processing of textual databases are also applicable to the processing of chemical structure databases, and vice versa. Applications discussed include: an algorithm for distribution sorting that has been applied to the design of screening systems for rapid chemical substructure searching; the use of measures of inter-molecular structural similarity for the analysis of hypertext graphs; a genetic algorithm for calculating term weights for relevance feedback searching for determining whether a molecule is likely to exhibit biological activity; and the use of data fusion to combine the results of different chemical similarity searches.

  9. Laser acceleration in vacuum with an open iris-loaded waveguide

    International Nuclear Information System (INIS)

    Xie, Ming

    1997-05-01

    An open iris-loaded waveguide structure is considered for laser acceleration of highly relativistic particle in vacuum. Complete characterization of all eigenmodes are given in analytical form for the structure. In particular the dominant radially polarized TM mode is evaluated in detail for laser acceleration. The entire parameter space is searched and it is found that below the laser damage threshold of the structure an acceleration gradient around 1 GV/m can be obtained over a phase slippage length of 10s of cm with TWs laser in the wavelength range from 1 to 10 μm

  10. Social-emotional characteristics of gifted accelerated and non-accelerated students in the Netherlands.

    Science.gov (United States)

    Hoogeveen, Lianne; van Hell, Janet G; Verhoeven, Ludo

    2012-12-01

    In the studies of acceleration conducted so far a multidimensional perspective has largely been neglected. No attempt has been made to relate social-emotional characteristics of accelerated versus non-accelerated students in perspective of environmental factors. In this study, social-emotional characteristics of accelerated gifted students in the Netherlands were examined in relation to personal and environmental factors. Self-concept and social contacts of accelerated (n = 148) and non-accelerated (n = 55) gifted students, aged 4 to 27 (M = 11.22, SD = 4.27) were measured. Self-concept and social contacts of accelerated and non-accelerated gifted students were measured using a questionnaire and a diary, and parents of these students evaluated their behavioural characteristics. Gender and birth order were studied as personal factors and grade, classroom, teachers' gender, teaching experience, and the quality of parent-school contact as environmental factors. The results showed minimal differences in the social-emotional characteristics of accelerated and non-accelerated gifted students. The few differences we found favoured the accelerated students. We also found that multiple grade skipping does not have negative effects on social-emotional characteristics, and that long-term effects of acceleration tend to be positive. As regards the possible modulation of personal and environmental factors, we merely found an impact of such factors in the non-accelerated group. The results of this study strongly suggest that social-emotional characteristics of accelerated gifted students and non-accelerated gifted students are largely similar. These results thus do not support worries expressed by teachers about the acceleration of gifted students. Our findings parallel the outcomes of earlier studies in the United States and Germany in that we observed that acceleration does not harm gifted students, not even in the case of multiple grade skipping. On the contrary, there is a

  11. A procedure for combining rotating-coil measurements of large-aperture accelerator magnets

    Energy Technology Data Exchange (ETDEWEB)

    Köster, Oliver, E-mail: oliver.koester@cern.ch; Fiscarelli, Lucio, E-mail: lucio.fiscarelli@cern.ch; Russenschuck, Stephan, E-mail: stephan.russenschuck@cern.ch

    2016-05-11

    The rotating search coil is a precise and widely used tool for measuring the magnetic field harmonics of accelerator magnets. This paper deals with combining several such multipole measurements, in order to cover magnet apertures largely exceeding the diameter of the available search coil. The method relies on the scaling laws for multipole coefficients and on the method of analytic continuation along zero-homotopic paths. By acquiring several measurements of the integrated magnetic flux density at different transverse positions within the bore of the accelerator magnet, the uncertainty on the field harmonics can be reduced at the expense of tight tolerances on the positioning. These positioning tolerances can be kept under control by mounting the rotating coil and its motor-drive unit on precision alignment stages. Therefore, the proposed technique is able to yield even more precise results for the higher-order field components than a dedicated rotating search coil of larger diameter. Moreover, the versatility of the measurement bench is enhanced by avoiding the construction of rotating search coils of different measurement radii.

  12. gWEGA: GPU-accelerated WEGA for molecular superposition and shape comparison.

    Science.gov (United States)

    Yan, Xin; Li, Jiabo; Gu, Qiong; Xu, Jun

    2014-06-05

    Virtual screening of a large chemical library for drug lead identification requires searching/superimposing a large number of three-dimensional (3D) chemical structures. This article reports a graphic processing unit (GPU)-accelerated weighted Gaussian algorithm (gWEGA) that expedites shape or shape-feature similarity score-based virtual screening. With 86 GPU nodes (each node has one GPU card), gWEGA can screen 110 million conformations derived from an entire ZINC drug-like database with diverse antidiabetic agents as query structures within 2 s (i.e., screening more than 55 million conformations per second). The rapid screening speed was accomplished through the massive parallelization on multiple GPU nodes and rapid prescreening of 3D structures (based on their shape descriptors and pharmacophore feature compositions). Copyright © 2014 Wiley Periodicals, Inc.

  13. Simulation of a medical linear accelerator for teaching purposes.

    Science.gov (United States)

    Anderson, Rhys; Lamey, Michael; MacPherson, Miller; Carlone, Marco

    2015-05-08

    Simulation software for medical linear accelerators that can be used in a teaching environment was developed. The components of linear accelerators were modeled to first order accuracy using analytical expressions taken from the literature. The expressions used constants that were empirically set such that realistic response could be expected. These expressions were programmed in a MATLAB environment with a graphical user interface in order to produce an environment similar to that of linear accelerator service mode. The program was evaluated in a systematic fashion, where parameters affecting the clinical properties of medical linear accelerator beams were adjusted independently, and the effects on beam energy and dose rate recorded. These results confirmed that beam tuning adjustments could be simulated in a simple environment. Further, adjustment of service parameters over a large range was possible, and this allows the demonstration of linear accelerator physics in an environment accessible to both medical physicists and linear accelerator service engineers. In conclusion, a software tool, named SIMAC, was developed to improve the teaching of linear accelerator physics in a simulated environment. SIMAC performed in a similar manner to medical linear accelerators. The authors hope that this tool will be valuable as a teaching tool for medical physicists and linear accelerator service engineers.

  14. Implications of accelerator experiments for models of the Kolar Gold Mine particles

    Energy Technology Data Exchange (ETDEWEB)

    Sarma, K V.L. [Tata Inst. of Fundamental Research, Bombay (India); Wolfenstein, L [Carnegie-Mellon Univ., Pittsburgh, Pa. (USA)

    1976-03-01

    The significance of accelerator searches for the new particles discovered in the Kolar Gold Mine experiments depends on the characteristics of the models of these particles. Models that could give cosmic ray neutrinos a great advantage over accelerator neutrinos are presented. The new particles should be produced in e/sup +/e/sup -/ colliding beams, but the cross-section is model dependent.

  15. CAS CERN Accelerator School. 5. Advanced accelerator physics course. Proceedings. Vol. 2

    International Nuclear Information System (INIS)

    Turner, S.

    1995-01-01

    The fifth CERN Accelerator School (CAS) advanced course on Accelerator Physics was given at the Paradise Hotel, Rhodes, Greece from 20 September to 1 October 1993. Its syllabus was based on the previous similar courses held at Oxford 1985, Berlin 1987, Uppsala 1989 and Noordwijkerhout 1991, and whose proceedings were published as CERN Reports 97-03, 89-01, 90-04 and 92-01, respectively. The present volumes are intended to replace and to bring up to date all the material in earlier publications. They contain not only all the lectures given in the Rhodes course but a number of important contributions to previous courses which are thought to be essential for a complete understanding of all aspects of the design and construction of particle accelerators at an advanced level. They include sections on Hamiltonian equations and accelerator optics, chromaticity and dynamic beam aperture, particle tracking, the kinetic theory, longitudinal beam optics, coherent instabilities, beam-beam dynamics, intra-beam scattering, beam cooling, Schottky noise, beam radiation, neutralisation, beam polarisation, radio-frequency quadrupoles, as well as chapters on space charge, superconducting magnets, crystal bending, beam-beam measurement and accelerator medical applications. (orig.)

  16. CAS CERN Accelerator School. 5. Advanced accelerator physics course. Proceedings. Vol. 1

    Energy Technology Data Exchange (ETDEWEB)

    Turner, S [ed.

    1995-11-22

    The fifth CERN Accelerator School (CAS) advanced course on Accelerator Physics was given at the Paradise Hotel, Rhodes, Greece from 20 September to 1 October 1993. Its syllabus was based on the previous similar courses held at Oxford 1985, Berlin 1987, Uppsala 1989 and Noordwijkerhout 1991, and whose proceedings were published as CERN Reports 87-03, 89-01, 90-04 and 92-01, respectively. The present volumes are intended to replace and to bring up to date all the material in earlier publications. They contain not only all the lectures given in the Rhodes course but a number of important contributions to previous courses which are thought to be essential for a complete understanding of all aspects of the design and construction of particle accelerators at an advanced level. They include sections on Hamiltonian equations and accelerator optics, chromaticity and dynamic beam aperture, particle tracking, the kinetic theory, longitudinal beam optics, coherent instabilities, beam-beam dynamics, intra-beam scattering, beam cooling, Schottky noise, beam radiation, neutralisation, beam polarisation, radio-frequency quadrupoles, as well as chapters on space charge, superconducting magnets, crystal bending, beam-beam measurement and accelerator medical applications. (orig.).

  17. CAS CERN Accelerator School. 5. Advanced accelerator physics course. Proceedings. Vol. 1

    International Nuclear Information System (INIS)

    Turner, S.

    1995-01-01

    The fifth CERN Accelerator School (CAS) advanced course on Accelerator Physics was given at the Paradise Hotel, Rhodes, Greece from 20 September to 1 October 1993. Its syllabus was based on the previous similar courses held at Oxford 1985, Berlin 1987, Uppsala 1989 and Noordwijkerhout 1991, and whose proceedings were published as CERN Reports 87-03, 89-01, 90-04 and 92-01, respectively. The present volumes are intended to replace and to bring up to date all the material in earlier publications. They contain not only all the lectures given in the Rhodes course but a number of important contributions to previous courses which are thought to be essential for a complete understanding of all aspects of the design and construction of particle accelerators at an advanced level. They include sections on Hamiltonian equations and accelerator optics, chromaticity and dynamic beam aperture, particle tracking, the kinetic theory, longitudinal beam optics, coherent instabilities, beam-beam dynamics, intra-beam scattering, beam cooling, Schottky noise, beam radiation, neutralisation, beam polarisation, radio-frequency quadrupoles, as well as chapters on space charge, superconducting magnets, crystal bending, beam-beam measurement and accelerator medical applications. (orig.)

  18. CAS CERN Accelerator School. 5. Advanced accelerator physics course. Proceedings. Vol. 2

    Energy Technology Data Exchange (ETDEWEB)

    Turner, S [ed.

    1995-11-22

    The fifth CERN Accelerator School (CAS) advanced course on Accelerator Physics was given at the Paradise Hotel, Rhodes, Greece from 20 September to 1 October 1993. Its syllabus was based on the previous similar courses held at Oxford 1985, Berlin 1987, Uppsala 1989 and Noordwijkerhout 1991, and whose proceedings were published as CERN Reports 97-03, 89-01, 90-04 and 92-01, respectively. The present volumes are intended to replace and to bring up to date all the material in earlier publications. They contain not only all the lectures given in the Rhodes course but a number of important contributions to previous courses which are thought to be essential for a complete understanding of all aspects of the design and construction of particle accelerators at an advanced level. They include sections on Hamiltonian equations and accelerator optics, chromaticity and dynamic beam aperture, particle tracking, the kinetic theory, longitudinal beam optics, coherent instabilities, beam-beam dynamics, intra-beam scattering, beam cooling, Schottky noise, beam radiation, neutralisation, beam polarisation, radio-frequency quadrupoles, as well as chapters on space charge, superconducting magnets, crystal bending, beam-beam measurement and accelerator medical applications. (orig.).

  19. Efficient Similarity Retrieval in Music Databases

    DEFF Research Database (Denmark)

    Ruxanda, Maria Magdalena; Jensen, Christian Søndergaard

    2006-01-01

    Audio music is increasingly becoming available in digital form, and the digital music collections of individuals continue to grow. Addressing the need for effective means of retrieving music from such collections, this paper proposes new techniques for content-based similarity search. Each music...

  20. COBRA: a Bayesian approach to pulsar searching

    Science.gov (United States)

    Lentati, L.; Champion, D. J.; Kramer, M.; Barr, E.; Torne, P.

    2018-02-01

    We introduce COBRA, a GPU-accelerated Bayesian analysis package for performing pulsar searching, that uses candidates from traditional search techniques to set the prior used for the periodicity of the source, and performs a blind search in all remaining parameters. COBRA incorporates models for both isolated and accelerated systems, as well as both Keplerian and relativistic binaries, and exploits pulse phase information to combine search epochs coherently, over time, frequency or across multiple telescopes. We demonstrate the efficacy of our approach in a series of simulations that challenge typical search techniques, including highly aliased signals, and relativistic binary systems. In the most extreme case, we simulate an 8 h observation containing 24 orbits of a pulsar in a binary with a 30 M⊙ companion. Even in this scenario we show that we can build up from an initial low-significance candidate, to fully recovering the signal. We also apply the method to survey data of three pulsars from the globular cluster 47Tuc: PSRs J0024-7204D, J0023-7203J and J0024-7204R. This final pulsar is in a 1.6 h binary, the shortest of any pulsar in 47Tuc, and additionally shows significant scintillation. By allowing the amplitude of the source to vary as a function of time, however, we show that we are able to obtain optimal combinations of such noisy data. We also demonstrate the ability of COBRA to perform high-precision pulsar timing directly on the single pulse survey data, and obtain a 95 per cent upper limit on the eccentricity of PSR J0024-7204R of εb < 0.0007.

  1. Cube search, revisited

    Science.gov (United States)

    Zhang, Xuetao; Huang, Jie; Yigit-Elliott, Serap; Rosenholtz, Ruth

    2015-01-01

    Observers can quickly search among shaded cubes for one lit from a unique direction. However, replace the cubes with similar 2-D patterns that do not appear to have a 3-D shape, and search difficulty increases. These results have challenged models of visual search and attention. We demonstrate that cube search displays differ from those with “equivalent” 2-D search items in terms of the informativeness of fairly low-level image statistics. This informativeness predicts peripheral discriminability of target-present from target-absent patches, which in turn predicts visual search performance, across a wide range of conditions. Comparing model performance on a number of classic search tasks, cube search does not appear unexpectedly easy. Easy cube search, per se, does not provide evidence for preattentive computation of 3-D scene properties. However, search asymmetries derived from rotating and/or flipping the cube search displays cannot be explained by the information in our current set of image statistics. This may merely suggest a need to modify the model's set of 2-D image statistics. Alternatively, it may be difficult cube search that provides evidence for preattentive computation of 3-D scene properties. By attributing 2-D luminance variations to a shaded 3-D shape, 3-D scene understanding may slow search for 2-D features of the target. PMID:25780063

  2. Combination of 2D/3D ligand-based similarity search in rapid virtual screening from multimillion compound repositories. Selection and biological evaluation of potential PDE4 and PDE5 inhibitors.

    Science.gov (United States)

    Dobi, Krisztina; Hajdú, István; Flachner, Beáta; Fabó, Gabriella; Szaszkó, Mária; Bognár, Melinda; Magyar, Csaba; Simon, István; Szisz, Dániel; Lőrincz, Zsolt; Cseh, Sándor; Dormán, György

    2014-05-28

    Rapid in silico selection of target focused libraries from commercial repositories is an attractive and cost effective approach. If structures of active compounds are available rapid 2D similarity search can be performed on multimillion compound databases but the generated library requires further focusing by various 2D/3D chemoinformatics tools. We report here a combination of the 2D approach with a ligand-based 3D method (Screen3D) which applies flexible matching to align reference and target compounds in a dynamic manner and thus to assess their structural and conformational similarity. In the first case study we compared the 2D and 3D similarity scores on an existing dataset derived from the biological evaluation of a PDE5 focused library. Based on the obtained similarity metrices a fusion score was proposed. The fusion score was applied to refine the 2D similarity search in a second case study where we aimed at selecting and evaluating a PDE4B focused library. The application of this fused 2D/3D similarity measure led to an increase of the hit rate from 8.5% (1st round, 47% inhibition at 10 µM) to 28.5% (2nd round at 50% inhibition at 10 µM) and the best two hits had 53 nM inhibitory activities.

  3. OpenMP for Accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Beyer, J C; Stotzer, E J; Hart, A; de Supinski, B R

    2011-03-15

    OpenMP [13] is the dominant programming model for shared-memory parallelism in C, C++ and Fortran due to its easy-to-use directive-based style, portability and broad support by compiler vendors. Similar characteristics are needed for a programming model for devices such as GPUs and DSPs that are gaining popularity to accelerate compute-intensive application regions. This paper presents extensions to OpenMP that provide that programming model. Our results demonstrate that a high-level programming model can provide accelerated performance comparable to hand-coded implementations in CUDA.

  4. Semantic Annotation of Unstructured Documents Using Concepts Similarity

    Directory of Open Access Journals (Sweden)

    Fernando Pech

    2017-01-01

    Full Text Available There is a large amount of information in the form of unstructured documents which pose challenges in the information storage, search, and retrieval. This situation has given rise to several information search approaches. Some proposals take into account the contextual meaning of the terms specified in the query. Semantic annotation technique can help to retrieve and extract information in unstructured documents. We propose a semantic annotation strategy for unstructured documents as part of a semantic search engine. In this proposal, ontologies are used to determine the context of the entities specified in the query. Our strategy for extracting the context is focused on concepts similarity. Each relevant term of the document is associated with an instance in the ontology. The similarity between each of the explicit relationships is measured through the combination of two types of associations: the association between each pair of concepts and the calculation of the weight of the relationships.

  5. Accelerated Peer-Review Journal Usage Technique for Undergraduates

    Science.gov (United States)

    Wallace, J. D.

    2008-01-01

    The internet has given undergraduate students ever-increasing access to academic journals via search engines and online databases. However, students typically do not have the ability to use these journals effectively. This often poses a dilemma for instructors. The accelerated peer-review journal usage (APJU) technique provides a way for…

  6. VEDs for charged particle accelerators: Indian scenario

    International Nuclear Information System (INIS)

    Bhandari, R.K.

    2012-01-01

    In the initial times after their invention, the charged particle accelerators have, primarily, been used for fundamental studies on nuclei and atoms. From the first modern accelerator, the cathode ray tube, used by J.J. Thomson for the discovery of electron, very recently the gigantic 27 km circumference Large Hadron Collider (LHC) is operational in the search of Higg's boson and related physics issues. Particle accelerators have emerged as powerful microscopes for investigating the finest details of cells, genes, molecules, atoms, protons, neutrons, muons, electrons, quarks and, possibly, still undiscovered even more fundamental constituents of the universe, such as dark matter and dark energy. Several noble prize winning discoveries have been made using accelerators. Accelerators are now being used in a wide area of industrial and medical applications. They are used for the production of radioisotopes for medical imaging, cancer therapy, food sterilization, treatment of waste water, sterilization of medical equipment, material modification, mass spectroscopy, cargo scanning, fabrication of semiconductors etc. Ongoing effort towards the development of accelerators with megawatt beam power is showing hope for a cleaner source of nuclear energy and treatment of nuclear waste. Several tens of thousands of accelerators are presently operational in the world for basic research and applications. Development of new accelerators has several times been driven by new technologies and materials and sometimes they have driven the technological developments towards cutting edge. Some examples are ultra-high vacuum in large volumes, superfluid helium in cryogenics, cryocoolers, superconducting magnets and RF cavities, high power vacuum electronic devices, global control systems, superfast computing and communication networks, giant data storage/processing systems etc. India has been pursuing a fairly robust programme of accelerator development at various institutions. It

  7. Semi-similar properties of light nuclear collisions

    International Nuclear Information System (INIS)

    Glagolev, V.V.; Hlavakova, J.; Martinska, G.; Urban, J.; Vytykacova, M.

    2000-01-01

    A new way of the representation of the nuclei fragmentation data is suggested. The self-similar behaviour of these processes called out by the kinematics is demonstrated. The convenience of working in accelerated nuclei is emphasized particularly for the determination of the binding energy of a wide class of nuclear fragments [ru

  8. Searching for heavy leptons

    International Nuclear Information System (INIS)

    Perl, M.L.

    1979-11-01

    This frankly speculative paper discusses ways in which leptons heavier than the tau (if they exist) might be found. The status of the tau is briefly reviewed, and methods for searching for sequential charged leptons beyond the tau and other charged leptons at PEP, PETRA, and CESR are sketched. Charged leptons with mass greater than 20 GeV/c 2 might be found at proton accelerators in hadron-hadron, photon-hadron, or ν-hadron collisions. Unstable, neutral heavy leptons might have unique, conserved lepton number or nonunique lepton number. The most difficult leptons to detect are stable neutral heavy leptons; nevertheless, a possible detection method is suggested. The obvious solution to seeking the postulated leptons is an e + e - colliding beam storage ring with c.m. energy = several hundred GeV. Until such a machine is built, one can employ Z 0 → L + + L - ; the use of R/sub Z 0 / and GAMMA/sub Z 0 / in this connection is discussed. If heavier Z 0 's exist, the heavy lepton search can be extended to higher energies. Another solution for producing these leptons involves the use of clashing e + e - linear accelerators. Characteristics of storage rings are compared with those of clashing linacs; a general description is given of the proposed SLAC Linac-Collider, along with the physics that could be done at such a machine. 6 figures

  9. The role of crowding in parallel search: Peripheral pooling is not responsible for logarithmic efficiency in parallel search.

    Science.gov (United States)

    Madison, Anna; Lleras, Alejandro; Buetti, Simona

    2018-02-01

    Recent results from our laboratory showed that, in fixed-target parallel search tasks, reaction times increase in a logarithmic fashion with set size, and the slope of this logarithmic function is modulated by lure-target similarity. These results were interpreted as being consistent with a processing architecture where early vision (stage one) processes elements in the display in exhaustive fashion with unlimited capacity and with a limitation in resolution. Here, we evaluate the contribution of crowding to our recent logarithmic search slope findings, considering the possibility that peripheral pooling of features (as observed in crowding) may be responsible for logarithmic efficiency. Factors known to affect the strength of crowding were varied, specifically: item spacing and similarity. The results from three experiments converge on the same pattern of results: reaction times increased logarithmically with set size and were modulated by lure-target similarity even when crowding was minimized within displays through an inter-item spacing manipulation. Furthermore, we found logarithmic search efficiencies were overall improved in displays where crowding was minimized compared to displays where crowding was possible. The findings from these three experiments suggest logarithmic efficiency in efficient search is not the result peripheral pooling of features. That said, the presence of crowding does tend to reduce search efficiency, even in "pop-out" search situations.

  10. Annotated bibliography on high-intensity linear accelerators

    International Nuclear Information System (INIS)

    Jameson, R.A.; Roybal, E.U.

    1978-01-01

    A technical bibliography covering subjects important to the design of high-intensity beam transport systems and linear accelerators is presented. Space charge and emittance growth are stressed. Subject and author concordances provide cross-reference to detailed citations, which include an abstract and notes on the material. The bibliography resides in a computer database that can be searched for key words and phrases

  11. On the structure of acceleration in turbulence

    DEFF Research Database (Denmark)

    Liberzon, A.; Lüthi, B.; Holzner, M.

    2012-01-01

    Acceleration and spatial velocity gradients are obtained simultaneously in an isotropic turbulent flow via three dimensional particle tracking velocimetry. We observe two distinct populations of intense acceleration events: one in flow regions of strong strain and another in regions of strong...... vorticity. Geometrical alignments with respect to vorticity vector and to the strain eigenvectors, curvature of Lagrangian trajectories and of streamlines for total acceleration, and for its convective part, , are studied in detail. We discriminate the alignment features of total and convective acceleration...... statistics, which are genuine features of turbulent nature from those of kinematic nature. We find pronounced alignment of acceleration with vorticity. Similarly, and especially are predominantly aligned at 45°with the most stretching and compressing eigenvectors of the rate of the strain tensor...

  12. Triplet Focusing for Recirculating Linear Muon Accelerators

    CERN Document Server

    Keil, Eberhard

    2001-01-01

    Focusing by symmetrical triplets is studied for the linear accelerator lattices in recirculating muon accelerators with several passes where the ratio of final to initial muon energy is about four. Triplet and FODO lattices are compared. At similar acceptance, triplet lattices have straight sections for the RF cavities that are about twice as long as in FODO lat-tices. For the same energy gain, the total lengths of the linear accelerators with triplet lattices are about the same as of those with FODO lattices.

  13. Accelerating Families of Fuzzy K-Means Algorithms for Vector Quantization Codebook Design.

    Science.gov (United States)

    Mata, Edson; Bandeira, Silvio; de Mattos Neto, Paulo; Lopes, Waslon; Madeiro, Francisco

    2016-11-23

    The performance of signal processing systems based on vector quantization depends on codebook design. In the image compression scenario, the quality of the reconstructed images depends on the codebooks used. In this paper, alternatives are proposed for accelerating families of fuzzy K-means algorithms for codebook design. The acceleration is obtained by reducing the number of iterations of the algorithms and applying efficient nearest neighbor search techniques. Simulation results concerning image vector quantization have shown that the acceleration obtained so far does not decrease the quality of the reconstructed images. Codebook design time savings up to about 40% are obtained by the accelerated versions with respect to the original versions of the algorithms.

  14. Final Report to the Department of Energy on the 1994 International Accelerator School: Frontiers of Accelerator Technology

    International Nuclear Information System (INIS)

    Harris, F.A.

    1998-01-01

    The international accelerator school on Frontiers of Accelerator Technology was organized jointly by the US Particle Accelerator School (Dr. Mel Month and Ms. Marilyn Paul), the CERN Accelerator School, and the KEK Accelerator School, and was hosted by the University of Hawaii. The course was held on Maui, Hawaii, November 3-9, 1994 and was made possible in part by a grant from the Department of Energy under award number DE-FG03-94ER40875, AMDT M006. The 1994 program was preceded by similar joint efforts held at Santa Margherita di Pula, Sardinia in February 1985, South Padre Island, Texas in October 1986, Anacapri, Italy in October 1988, Hilton Head Island, South Carolina in October 1990, and Benalmedena, Spain in October/November 1992. The most recent program was held in Montreux, Switzerland in May 1998. The purpose of the program is to disseminate knowledge on the latest ideas and developments in the technology of particle accelerators by bringing together known world experts and younger scientists in the field. It is intended for individuals with professional interest in accelerator physics and technology, for graduate students, for post-docs, for those interested in accelerator based sciences, and for scientific and engineering staff at industrial firms, especially those companies specializing in accelerator components

  15. CAS - CERN Accelerator School and ALBA Synchrotron Light Facility : Course on Vacuum in Accelerators

    CERN Document Server

    Vacuum in Accelerators

    2007-01-01

    These proceedings present the lectures given at the twentieth specialized course organized by the CERN Accelerator School (CAS), the topic being Vacuum in Accelerators. The course was held in Platja d’Aro, Spain, from 16 to 24 May 2006. A similar course took place in Snekersten, Denmark, in 1999, with proceedings published as CERN 99-05. After an interval of seven years, the aim of this course was to present a review of the actual state of the art and to highlight the latest developments in the field. The lectures start with a general overview of vacuum, accelerators and cryogenics followed by a more detailed review of the basic principles concerning thermal and non-thermal outgassing. More specialized lectures are then proposed on gas dynamics, on the interaction of energetic particles with matter, and on beam–gas collisions. The production and measurement of vacuum is addressed in subsequent lectures on pumps and vacuum gauges which present a detailed view of the materials currently used in accelerators...

  16. Music Retrieval based on Melodic Similarity

    NARCIS (Netherlands)

    Typke, R.

    2007-01-01

    This thesis introduces a method for measuring melodic similarity for notated music such as MIDI files. This music search algorithm views music as sets of notes that are represented as weighted points in the two-dimensional space of time and pitch. Two point sets can be compared by calculating how

  17. Background to Dark Matter Searches from Galactic Cosmic Rays

    CERN Multimedia

    CERN. Geneva

    2015-01-01

    Just as searches for BSM physics at the LHC necessitate a careful audit of SM backgrounds, the search for signals of dark matter in cosmic rays must contend with production of secondaries like e+ and pbar through cosmic ray propagation in the Galaxy. The theoretical framework for calculating this has however not been directly calibrated at the high energies being explored by AMS-02 and there may be surprises in store. In particular a nearby source where cosmic rays are being accelerated stochastically can naturally generate a e+ fraction rising with energy as is observed. The test of this is the expected correlated rise in other secondary/primary ratios e.g. B/C and pbar/p. Such a nearby cosmic accelerator should also be detectable through the concomitant flux of neutrinos and its discovery would be (nearly!) as exciting as that of dark matter.

  18. Low voltage electron beam accelerators

    International Nuclear Information System (INIS)

    Ochi, Masafumi

    2003-01-01

    Widely used electron accelerators in industries are the electron beams with acceleration voltage at 300 kV or less. The typical examples are shown on manufactures in Japan, equipment configuration, operation, determination of process parameters, and basic maintenance requirement of the electron beam processors. New electron beam processors with acceleration voltage around 100 kV were introduced maintaining the relatively high dose speed capability of around 10,000 kGy x mpm at production by ESI (Energy Science Inc. USA, Iwasaki Electric Group). The application field like printing and coating for packaging requires treating thickness of 30 micron or less. It does not require high voltage over 110 kV. Also recently developed is a miniature bulb type electron beam tube with energy less than 60 kV. The new application area for this new electron beam tube is being searched. The drive force of this technology to spread in the industries would be further development of new application, process and market as well as the price reduction of the equipment, upon which further acknowledgement and acceptance of the technology to societies and industries would entirely depend. (Y. Tanaka)

  19. Low voltage electron beam accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Ochi, Masafumi [Iwasaki Electric Co., Ltd., Tokyo (Japan)

    2003-02-01

    Widely used electron accelerators in industries are the electron beams with acceleration voltage at 300 kV or less. The typical examples are shown on manufactures in Japan, equipment configuration, operation, determination of process parameters, and basic maintenance requirement of the electron beam processors. New electron beam processors with acceleration voltage around 100 kV were introduced maintaining the relatively high dose speed capability of around 10,000 kGy x mpm at production by ESI (Energy Science Inc. USA, Iwasaki Electric Group). The application field like printing and coating for packaging requires treating thickness of 30 micron or less. It does not require high voltage over 110 kV. Also recently developed is a miniature bulb type electron beam tube with energy less than 60 kV. The new application area for this new electron beam tube is being searched. The drive force of this technology to spread in the industries would be further development of new application, process and market as well as the price reduction of the equipment, upon which further acknowledgement and acceptance of the technology to societies and industries would entirely depend. (Y. Tanaka)

  20. Timescales for detecting a significant acceleration in sea level rise.

    Science.gov (United States)

    Haigh, Ivan D; Wahl, Thomas; Rohling, Eelco J; Price, René M; Pattiaratchi, Charitha B; Calafat, Francisco M; Dangendorf, Sönke

    2014-04-14

    There is observational evidence that global sea level is rising and there is concern that the rate of rise will increase, significantly threatening coastal communities. However, considerable debate remains as to whether the rate of sea level rise is currently increasing and, if so, by how much. Here we provide new insights into sea level accelerations by applying the main methods that have been used previously to search for accelerations in historical data, to identify the timings (with uncertainties) at which accelerations might first be recognized in a statistically significant manner (if not apparent already) in sea level records that we have artificially extended to 2100. We find that the most important approach to earliest possible detection of a significant sea level acceleration lies in improved understanding (and subsequent removal) of interannual to multidecadal variability in sea level records.

  1. Neutrino mass and mixing, and non-accelerator experiments

    International Nuclear Information System (INIS)

    Robertson, R.G.H.

    1992-01-01

    We review the current status of experimental knowledge about neutrinos derived from kinematic mass measurements, neutrino oscillation searches at reactors and accelerators, solar neutrinos, atmospheric neutrinos, and single and double beta decay. The solar neutrino results yield fairly strong and consistent indication that neutrino oscillations are occurring. Other evidence for new physics is less consistent and convincing

  2. Comparing image search behaviour in the ARRS GoldMiner search engine and a clinical PACS/RIS.

    Science.gov (United States)

    De-Arteaga, Maria; Eggel, Ivan; Do, Bao; Rubin, Daniel; Kahn, Charles E; Müller, Henning

    2015-08-01

    Information search has changed the way we manage knowledge and the ubiquity of information access has made search a frequent activity, whether via Internet search engines or increasingly via mobile devices. Medical information search is in this respect no different and much research has been devoted to analyzing the way in which physicians aim to access information. Medical image search is a much smaller domain but has gained much attention as it has different characteristics than search for text documents. While web search log files have been analysed many times to better understand user behaviour, the log files of hospital internal systems for search in a PACS/RIS (Picture Archival and Communication System, Radiology Information System) have rarely been analysed. Such a comparison between a hospital PACS/RIS search and a web system for searching images of the biomedical literature is the goal of this paper. Objectives are to identify similarities and differences in search behaviour of the two systems, which could then be used to optimize existing systems and build new search engines. Log files of the ARRS GoldMiner medical image search engine (freely accessible on the Internet) containing 222,005 queries, and log files of Stanford's internal PACS/RIS search called radTF containing 18,068 queries were analysed. Each query was preprocessed and all query terms were mapped to the RadLex (Radiology Lexicon) terminology, a comprehensive lexicon of radiology terms created and maintained by the Radiological Society of North America, so the semantic content in the queries and the links between terms could be analysed, and synonyms for the same concept could be detected. RadLex was mainly created for the use in radiology reports, to aid structured reporting and the preparation of educational material (Lanlotz, 2006) [1]. In standard medical vocabularies such as MeSH (Medical Subject Headings) and UMLS (Unified Medical Language System) specific terms of radiology are often

  3. Interdisciplinary glossary — particle accelerators and medicine

    International Nuclear Information System (INIS)

    Dmitrieva, V V; Dyubkov, V S; Nikitaev, V G; Ulin, S E

    2016-01-01

    A general concept of a new interdisciplinary glossary, which includes particle accelerator terminology used in medicine, as well as relevant medical concepts, is presented. Its structure and usage rules are described. An example, illustrating the quickly searching technique of relevant information in this Glossary, is considered. A website address, where one can get an access to the Glossary, is specified. Glossary can be refined and supplemented. (paper)

  4. Heavy Ion Acceleration at J-PARC

    Science.gov (United States)

    SATO, Susumu

    2018-02-01

    J-PARC, the Japan Proton Accelerator Research Complex, is an accelerator, which provides a high-intensity proton beam. Recently as a very attractive project, the acceleration of heavy ions produced by supplementary ion sources, called J-PARC-HI, is seriously contemplated by domestic as well as international communities. The planned facility would accelerate heavy ions up to U92+ with a beam energy 20 AGeV ( of 6.2 AGeV). The highlight of the J-PARC-HI project is its very high beam rate up to 1011 Hz, which will enable the study of very rare events. Taking advantage of this high intensity, J-PARC-HI will carry out frontier studies of new and rare observables in this energy region: (i) nuclear medium modification of chiral property of vector mesons through low-mass di-lepton signal, (ii) QCD critical pointcharacterization through event-by-event fluctuation signals of particle production, (iii) systematic measurements related to the equation of state through collective flow signal or two-particle momentum correlation signal, or (iv) the search of hyper nuclei with multi strangeness including or exceeding S = 3. The current plan of J-PARC-HI aims to carrying out the first experimental measurements in 2025.

  5. Search for K/sub L//sup O/→μe at the 10-13 level

    International Nuclear Information System (INIS)

    McFarlane, W.K.; Cooper, M.D.

    1989-01-01

    A few of the experimental problems of searching for the lepton non-conserving decay K/sub L//sup O/ → μe are discussed in the light of the experience of BNL E791. This experiment was designed to have high rate capability and excellent background rejection; as such it provides information useful in evaluating designs for similar experiments at high-intensity facilities. The conclusion is that a level of a few times 10 -13 may be reachable, but requires careful design and makes significant demands on the accelerator, particularly as regards beam time structure. Development of precise positron-sensitive detectors with shorter resolving times is also necessary. 4 refs., 1 fig

  6. Proposal for a Similar Question Search System on a Q&A Site

    Directory of Open Access Journals (Sweden)

    Katsutoshi Kanamori

    2014-06-01

    Full Text Available There is a service to help Internet users obtain answers to specific questions when they visit a Q&A site. A Q&A site is very useful for the Internet user, but posted questions are often not answered immediately. This delay in answering occurs because in most cases another site user is answering the question manually. In this study, we propose a system that can present a question that is similar to a question posted by a user. An advantage of this system is that a user can refer to an answer to a similar question. This research measures the similarity of a candidate question based on word and dependency parsing. In an experiment, we examined the effectiveness of the proposed system for questions actually posted on the Q&A site. The result indicates that the system can show the questioner the answer to a similar question. However, the system still has a number of aspects that should be improved.

  7. Accelerated Optimization in the PDE Framework: Formulations for the Active Contour Case

    KAUST Repository

    Yezzi, Anthony; Sundaramoorthi, Ganesh

    2017-01-01

    Following the seminal work of Nesterov, accelerated optimization methods have been used to powerfully boost the performance of first-order, gradient-based parameter estimation in scenarios where second-order optimization strategies are either inapplicable or impractical. Not only does accelerated gradient descent converge considerably faster than traditional gradient descent, but it also performs a more robust local search of the parameter space by initially overshooting and then oscillating back as it settles into a final configuration, thereby selecting only local minimizers with a basis of attraction large enough to contain the initial overshoot. This behavior has made accelerated and stochastic gradient search methods particularly popular within the machine learning community. In their recent PNAS 2016 paper, Wibisono, Wilson, and Jordan demonstrate how a broad class of accelerated schemes can be cast in a variational framework formulated around the Bregman divergence, leading to continuum limit ODE's. We show how their formulation may be further extended to infinite dimension manifolds (starting here with the geometric space of curves and surfaces) by substituting the Bregman divergence with inner products on the tangent space and explicitly introducing a distributed mass model which evolves in conjunction with the object of interest during the optimization process. The co-evolving mass model, which is introduced purely for the sake of endowing the optimization with helpful dynamics, also links the resulting class of accelerated PDE based optimization schemes to fluid dynamical formulations of optimal mass transport.

  8. Accelerated Optimization in the PDE Framework: Formulations for the Active Contour Case

    KAUST Repository

    Yezzi, Anthony

    2017-11-27

    Following the seminal work of Nesterov, accelerated optimization methods have been used to powerfully boost the performance of first-order, gradient-based parameter estimation in scenarios where second-order optimization strategies are either inapplicable or impractical. Not only does accelerated gradient descent converge considerably faster than traditional gradient descent, but it also performs a more robust local search of the parameter space by initially overshooting and then oscillating back as it settles into a final configuration, thereby selecting only local minimizers with a basis of attraction large enough to contain the initial overshoot. This behavior has made accelerated and stochastic gradient search methods particularly popular within the machine learning community. In their recent PNAS 2016 paper, Wibisono, Wilson, and Jordan demonstrate how a broad class of accelerated schemes can be cast in a variational framework formulated around the Bregman divergence, leading to continuum limit ODE\\'s. We show how their formulation may be further extended to infinite dimension manifolds (starting here with the geometric space of curves and surfaces) by substituting the Bregman divergence with inner products on the tangent space and explicitly introducing a distributed mass model which evolves in conjunction with the object of interest during the optimization process. The co-evolving mass model, which is introduced purely for the sake of endowing the optimization with helpful dynamics, also links the resulting class of accelerated PDE based optimization schemes to fluid dynamical formulations of optimal mass transport.

  9. Kyushu University Tandem Accelerator Laboratory report, 1988-1990

    International Nuclear Information System (INIS)

    Sagara, Kenshi; Morinobu, Shunpei

    1991-03-01

    Ten years have elapsed since the first beam was obtained from the Kyushu University tandem accelerator. Although the laboratory has achieved successful scientific results, the performance of the accelerator has been on a decline mainly due to the aging. In the last two and a half years, the tandem accelerator has suffered from the fall of terminal voltage to around 8 MV. However, the experimental studies in the laboratory have been active. The utilization of the polarized beams of protons and deuterons to study the scattering of the p+d system, the use of heavy ion beam for the systematic search for the molecular resonance in relatively heavy systems and for the study on reaction mechanism, the use of both light and heavy ion beams for the studies on nuclear engineering, material science and geological science and so on were carried out. The gamma ray spectroscopic study on the state near yrast line was largely hampered by the accelerator troubles, instead, the collaboration with the Niels Bohr Institute provided a wonderful research ground for the studies. (K.I.)

  10. Brazing techniques for side-coupled electron accelerator structures

    International Nuclear Information System (INIS)

    Hansborough, L.D.; Clark, W.L.; DePaula, R.A.; Martinez, F.A.; Roybal, P.L.; Wilkerson, L.C.; Young, L.M.

    1986-01-01

    The collaboration between the Los Alamos National Laboratory and the National Bureau of Standards (NBS), started in 1979, has led to the development of an advanced c-w microtron accelerator design. The four 2380-MHz NBS accelerating structures, containing a total of 184 accelerating cavities, have been fabricated and delivered. New fabrication methods, coupled with refinements of hydrogen-furnace brazing techniques described in this paper, allow efficient production of side-coupled structures. Success with the NBS RTM led to Los Alamos efforts on similar 2450-MHz accelerators for the microtron accelerator operated by the Nuclear Physics Department of the University of Illinois. Two accelerators (each with 17 cavities) have been fabricated; in 1986, a 45-cavity accelerator is being fabricated by private industry with some assistance from Los Alamos. Further private industry experience and refinement of the described fabrication techniques may allow future accelerators of this type to be completely fabricated by private industry

  11. Whether and How to Select Inertia and Acceleration of Discrete Particle Swarm Optimization Algorithm: A Study on Channel Assignment

    Directory of Open Access Journals (Sweden)

    Min Jin

    2014-01-01

    Full Text Available There is recently a great deal of interest and excitement in understanding the role of inertia and acceleration in the motion equation of discrete particle swarm optimization (DPSO algorithms. It still remains unknown whether the inertia section should be abandoned and how to select the appropriate acceleration in order for DPSO to show the best convergence performance. Adopting channel assignment as a case study, this paper systematically conducts experimental filtering research on this issue. Compared with other channel assignment schemes, the proposed scheme and the selection of inertia and acceleration are verified to have the advantage to channel assignment in three respects of convergence rate, convergence speed, and the independency of the quality of initial solution. Furthermore, the experimental result implies that DSPO might have the best convergence performance when its motion equation includes an inertia section in a less medium weight, a bigger acceleration coefficient for global-search optimum, and a smaller acceleration coefficient for individual-search optimum.

  12. Final Report to the Department of Energy on the 1994 International Accelerator School: Frontiers of Accelerator Technology; FINAL

    International Nuclear Information System (INIS)

    Harris, F.A.

    1998-01-01

    The international accelerator school on Frontiers of Accelerator Technology was organized jointly by the US Particle Accelerator School (Dr. Mel Month and Ms. Marilyn Paul), the CERN Accelerator School, and the KEK Accelerator School, and was hosted by the University of Hawaii. The course was held on Maui, Hawaii, November 3-9, 1994 and was made possible in part by a grant from the Department of Energy under award number DE-FG03-94ER40875, AMDT M006. The 1994 program was preceded by similar joint efforts held at Santa Margherita di Pula, Sardinia in February 1985, South Padre Island, Texas in October 1986, Anacapri, Italy in October 1988, Hilton Head Island, South Carolina in October 1990, and Benalmedena, Spain in October/November 1992. The most recent program was held in Montreux, Switzerland in May 1998. The purpose of the program is to disseminate knowledge on the latest ideas and developments in the technology of particle accelerators by bringing together known world experts and younger scientists in the field. It is intended for individuals with professional interest in accelerator physics and technology, for graduate students, for post-docs, for those interested in accelerator based sciences, and for scientific and engineering staff at industrial firms, especially those companies specializing in accelerator components

  13. In search of late time evolution self-similar scaling laws of Rayleigh-Taylor and Richtmyer-Meshkov hydrodynamic instabilities - recent theorical advance and NIF Discovery-Science experiments

    Science.gov (United States)

    Shvarts, Dov

    2017-10-01

    Hydrodynamic instabilities, and the mixing that they cause, are of crucial importance in describing many phenomena, from very large scales such as stellar explosions (supernovae) to very small scales, such as inertial confinement fusion (ICF) implosions. Such mixing causes the ejection of stellar core material in supernovae, and impedes attempts at ICF ignition. The Rayleigh-Taylor instability (RTI) occurs at an accelerated interface between two fluids with the lower density accelerating the higher density fluid. The Richtmyer-Meshkov (RM) instability occurs when a shock wave passes an interface between the two fluids of different density. In the RTI, buoyancy causes ``bubbles'' of the light fluid to rise through (penetrate) the denser fluid, while ``spikes'' of the heavy fluid sink through (penetrate) the lighter fluid. With realistic multi-mode initial conditions, in the deep nonlinear regime, the mixing zone width, H, and its internal structure, progress through an inverse cascade of spatial scales, reaching an asymptotic self-similar evolution: hRT =αRT Agt2 for RT and hRM =αRM tθ for RM. While this characteristic behavior has been known for years, the self-similar parameters αRT and θRM and their dependence on dimensionality and density ratio have continued to be intensively studied and a relatively wide distribution of those values have emerged. This talk will describe recent theoretical advances in the description of this turbulent mixing evolution that sheds light on the spread in αRT and θRM. Results of new and specially designed experiments, done by scientists from several laboratories, were performed recently using NIF, the only facility that is powerful enough to reach the self-similar regime, for quantitative testing of this theoretical advance, will be presented.

  14. Bystander cells enhance NK cytotoxic efficiency by reducing search time.

    Science.gov (United States)

    Zhou, Xiao; Zhao, Renping; Schwarz, Karsten; Mangeat, Matthieu; Schwarz, Eva C; Hamed, Mohamed; Bogeski, Ivan; Helms, Volkhard; Rieger, Heiko; Qu, Bin

    2017-03-13

    Natural killer (NK) cells play a central role during innate immune responses by eliminating pathogen-infected or tumorigenic cells. In the microenvironment, NK cells encounter not only target cells but also other cell types including non-target bystander cells. The impact of bystander cells on NK killing efficiency is, however, still elusive. In this study we show that the presence of bystander cells, such as P815, monocytes or HUVEC, enhances NK killing efficiency. With bystander cells present, the velocity and persistence of NK cells were increased, whereas the degranulation of lytic granules remained unchanged. Bystander cell-derived H 2 O 2 was found to mediate the acceleration of NK cell migration. Using mathematical diffusion models, we confirm that local acceleration of NK cells in the vicinity of bystander cells reduces their search time to locate target cells. In addition, we found that integrin β chains (β1, β2 and β7) on NK cells are required for bystander-enhanced NK migration persistence. In conclusion, we show that acceleration of NK cell migration in the vicinity of H 2 O 2 -producing bystander cells reduces target cell search time and enhances NK killing efficiency.

  15. Enhancing Divergent Search through Extinction Events

    DEFF Research Database (Denmark)

    Lehman, Joel; Miikkulainen, Risto

    2015-01-01

    for the capacity to evolve. This hypothesis is tested through experiments in two evolutionary robotics domains. The results show that combining extinction events with divergent search increases evolvability, while combining them with convergent search offers no similar benefit. The conclusion is that extinction...

  16. Online Information Search Performance and Search Strategies in a Health Problem-Solving Scenario.

    Science.gov (United States)

    Sharit, Joseph; Taha, Jessica; Berkowsky, Ronald W; Profita, Halley; Czaja, Sara J

    2015-01-01

    Although access to Internet health information can be beneficial, solving complex health-related problems online is challenging for many individuals. In this study, we investigated the performance of a sample of 60 adults ages 18 to 85 years in using the Internet to resolve a relatively complex health information problem. The impact of age, Internet experience, and cognitive abilities on measures of search time, amount of search, and search accuracy was examined, and a model of Internet information seeking was developed to guide the characterization of participants' search strategies. Internet experience was found to have no impact on performance measures. Older participants exhibited longer search times and lower amounts of search but similar search accuracy performance as their younger counterparts. Overall, greater search accuracy was related to an increased amount of search but not to increased search duration and was primarily attributable to higher cognitive abilities, such as processing speed, reasoning ability, and executive function. There was a tendency for those who were younger, had greater Internet experience, and had higher cognitive abilities to use a bottom-up (i.e., analytic) search strategy, although use of a top-down (i.e., browsing) strategy was not necessarily unsuccessful. Implications of the findings for future studies and design interventions are discussed.

  17. Experimental Study of Dowel Bar Alternatives Based on Similarity Model Test

    Directory of Open Access Journals (Sweden)

    Chichun Hu

    2017-01-01

    Full Text Available In this study, a small-scaled accelerated loading test based on similarity theory and Accelerated Pavement Analyzer was developed to evaluate dowel bars with different materials and cross-sections. Jointed concrete specimen consisting of one dowel was designed as scaled model for the test, and each specimen was subjected to 864 thousand loading cycles. Deflections between jointed slabs were measured with dial indicators, and strains of the dowel bars were monitored with strain gauges. The load transfer efficiency, differential deflection, and dowel-concrete bearing stress for each case were calculated from these measurements. The test results indicated that the effect of the dowel modulus on load transfer efficiency can be characterized based on the similarity model test developed in the study. Moreover, round steel dowel was found to have similar performance to larger FRP dowel, and elliptical dowel can be preferentially considered in practice.

  18. Numerical study of similarity in prototype and model pumped turbines

    International Nuclear Information System (INIS)

    Li, Z J; Wang, Z W; Bi, H L

    2014-01-01

    Similarity study of prototype and model pumped turbines are performed by numerical simulation and the partial discharge case is analysed in detail. It is found out that in the RSI (rotor-stator interaction) region where the flow is convectively accelerated with minor flow separation, a high level of similarity in flow patterns and pressure fluctuation appear with relative pressure fluctuation amplitude of model turbine slightly higher than that of prototype turbine. As for the condition in the runner where the flow is convectively accelerated with severe separation, similarity fades substantially due to different topology of flow separation and vortex formation brought by distinctive Reynolds numbers of the two turbines. In the draft tube where the flow is diffusively decelerated, similarity becomes debilitated owing to different vortex rope formation impacted by Reynolds number. It is noted that the pressure fluctuation amplitude and characteristic frequency of model turbine are larger than those of prototype turbine. The differences in pressure fluctuation characteristics are discussed theoretically through dimensionless Navier-Stokes equation. The above conclusions are all made based on simulation without regard to the penstock response and resonance

  19. Exotic particle searches using the Purdue AMS facility

    International Nuclear Information System (INIS)

    Javorsek, D. II; Elmore, D.; Fischbach, E.; Miller, T.

    2001-01-01

    Two exotic particle searches are being performed using the Accelerator Mass Spectrometer (AMS) at the Purdue Rare Isotope Measurement Laboratory (PRIME Lab). Recent theoretical developments allow for the possibility of small violations of the symmetrization postulate, which may lead in turn to detectable violations of the Pauli exclusion principle. We report the results of a new experimental search for paronic (Pauli-violating) Be, denoted by Be', in samples where Be' retention would be highest. Our limits represent an improvement by a factor of approximately 300 over a previous search for Be'. There are also several recent cosmological motivations for strongly interacting massive particles (SIMPs). We present results from our current search for anomalous heavy isotopes of Au in samples of Australian and laboratory gold with a limit on SIMP abundance ratios as low as 10 -12 . This experiment provides significant constraints on the existence of such particles in high Z nuclei

  20. NONTHERMALLY DOMINATED ELECTRON ACCELERATION DURING MAGNETIC RECONNECTION IN A LOW-β PLASMA

    International Nuclear Information System (INIS)

    Li, Xiaocan; Li, Gang; Guo, Fan; Li, Hui

    2015-01-01

    By means of fully kinetic simulations, we investigate electron acceleration during magnetic reconnection in a nonrelativistic proton–electron plasma with conditions similar to solar corona and flares. We demonstrate that reconnection leads to a nonthermally dominated electron acceleration with a power-law energy distribution in the nonrelativistic low-β regime but not in the high-β regime, where β is the ratio of the plasma thermal pressure and the magnetic pressure. The accelerated electrons contain most of the dissipated magnetic energy in the low-β regime. A guiding-center current description is used to reveal the role of electron drift motions during the bulk nonthermal energization. We find that the main acceleration mechanism is a Fermi-type acceleration accomplished by the particle curvature drift motion along the electric field induced by the reconnection outflows. Although the acceleration mechanism is similar for different plasma β, low-β reconnection drives fast acceleration on Alfvénic timescales and develops power laws out of thermal distribution. The nonthermally dominated acceleration resulting from magnetic reconnection in low-β plasma may have strong implications for the  highly efficient electron acceleration in solar flares and other astrophysical systems

  1. A New Search for $ \

    CERN Multimedia

    Dore, U; Kodama, K; Ushida, N; Loverre, P F

    2002-01-01

    % WA95\\\\ \\\\ The question whether neutrino flavours mix at some level - and the related question whether neutrinos have non-zero mass - is one of the remaining great challenges of experimental physics. Neutrinos from supernovae, from the sun, from the earth's atmosphere, from nuclear reactors and from radioactive decays are currently under study; in this frame, experiments using accelerators play a privileged role because the well known neutrino source properties allow high precision measurements and background control.\\\\ \\\\The main goal of the CHORUS experiment is to search for neutrino oscillations in the $\

  2. Search Engine For Ebook Portal

    Directory of Open Access Journals (Sweden)

    Prashant Kanade

    2017-05-01

    Full Text Available The purpose of this paper is to establish the textual analytics involved in developing a search engine for an ebook portal. We have extracted our dataset from Project Gutenberg using a robot harvester. Textual Analytics is used for efficient search retrieval. The entire dataset is represented using Vector Space Model where each document is a vector in the vector space. Further for computational purposes we represent our dataset in the form of a Term Frequency- Inverse Document Frequency tf-idf matrix. The first step involves obtaining the most coherent sequence of words of the search query entered. The entered query is processed using Front End algorithms this includes-Spell Checker Text Segmentation and Language Modeling. Back End processing includes Similarity Modeling Clustering Indexing and Retrieval. The relationship between documents and words is established using cosine similarity measured between the documents and words in Vector Space. Clustering performed is used to suggest books that are similar to the search query entered by the user. Lastly the Lucene Based Elasticsearch engine is used for indexing on the documents. This allows faster retrieval of data. Elasticsearch returns a dictionary and creates a tf-idf matrix. The processed query is compared with the dictionary obtained and tf-idf matrix is used to calculate the score for each match to give most relevant result.

  3. MINOS Sterile Neutrino Search

    Energy Technology Data Exchange (ETDEWEB)

    Koskinen, David Jason [Univ. College London, Bloomsbury (United Kingdom)

    2009-02-01

    The Main Injector Neutrino Oscillation Search (MINOS) is a long-baseline accelerator neutrino experiment designed to measure properties of neutrino oscillation. Using a high intensity muon neutrino beam, produced by the Neutrinos at Main Injector (NuMI) complex at Fermilab, MINOS makes two measurements of neutrino interactions. The first measurement is made using the Near Detector situated at Fermilab and the second is made using the Far Detector located in the Soudan Underground laboratory in northern Minnesota. The primary goal of MINOS is to verify, and measure the properties of, neutrino oscillation between the two detectors using the v μ→ Vτ transition. A complementary measurement can be made to search for the existence of sterile neutrinos; an oft theorized, but experimentally unvalidated particle. The following thesis will show the results of a sterile neutrino search using MINOS RunI and RunII data totaling ~2.5 x 1020 protons on target. Due to the theoretical nature of sterile neutrinos, complete formalism that covers transition probabilities for the three known active states with the addition of a sterile state is also presented.

  4. Extending the search for high-energy muon neutrinos from GRBs with ANTARES

    CERN Multimedia

    2017-01-01

    Gamma-ray bursts (GRBs) are transient sources, potential sites of cosmic-rays acceleration: they are expected to produce high-energy neutrinos in pγ interactions through the decay of charged mesons, thus they constitute promising targets for neutrino telescopes. A search for muon neutrinos from GRBs using 9 years of ANTARES data is here presented, assuming particle acceleration at internal shocks, as expected in the fireball model.

  5. Single atom counting with accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Woelfli, W [Eidgenoessische Technische Hochschule, Zurich (Switzerland)

    1984-02-01

    Direct detection of radioisotopes with conventional mass spectrometers is possible when the potential background atoms, in particular stable isotopes of the same mass (isobars) or molecules of similar mass are present in sufficiently low concentrations. Most of the long lived radioisotopes of interest for dating purposes however, occur in such small concentrations that their peak in the mass spectrum is obscured by the stable isobar and molecule distributions. The key idea of the new AMS technique which allows us to measure directly such small concentrations is the acceleration of the sample atoms to MeV energies and to use various filter processes and particle identification techniques developed for nuclear physics research to eliminate the isobaric and molecular interferences. The detection methods used for each radioisotope depend on the dominant background atoms and these in turn depend on the specific accelerator used. The problems encountered in transforming an existing particle accelerator into a high precision dating tool are considerable and have been solved only recently for one type of accelerator, notably the tandem Van de Graaff. For this reason the description of the AMS method and some of its applications is restricted to this type of accelerator only.

  6. Linear accelerator stereotactic radiosurgery for trigeminal neuralgia.

    Science.gov (United States)

    Varela-Lema, Leonor; Lopez-Garcia, Marisa; Maceira-Rozas, Maria; Munoz-Garzon, Victor

    2015-01-01

    Stereotactic radiosurgery is accepted as an alternative for patients with refractory trigeminal neuralgia, but existing evidence is fundamentally based on the Gamma Knife, which is a specific device for intracranial neurosurgery, available in few facilities. Over the last decade it has been shown that the use of linear accelerators can achieve similar diagnostic accuracy and equivalent dose distribution. To assess the effectiveness and safety of linear-accelerator stereotactic radiosurgery for the treatment of patients with refractory trigeminal neuralgia. We carried out a systematic search of the literature in the main electronic databases (PubMed, Embase, ISI Web of Knowledge, Cochrane, Biomed Central, IBECS, IME, CRD) and reviewed grey literature. All original studies on the subject published in Spanish, French, English, and Portuguese were eligible for inclusion. The selection and critical assessment was carried out by 2 independent reviewers based on pre-defined criteria. In view of the impossibility of carrying out a pooled analysis, data were analyzed in a qualitative way. Eleven case series were included. In these, satisfactory pain relief (BIN I-IIIb or reduction in pain = 50) was achieved in 75% to 95.7% of the patients treated. The mean time to relief from pain ranged from 8.5 days to 3.8 months. The percentage of patients who presented with recurrences after one year of follow-up ranged from 5% to 28.8%. Facial swelling or hypoesthesia, mostly of a mild-moderate grade appeared in 7.5% - 51.9% of the patients. Complete anaesthesia dolorosa was registered in only study (5.3%). Cases of hearing loss (2.5%), brainstem edema (5.8%), and neurotrophic keratoplasty (3.5%) were also isolated. The results suggest that stereotactic radiosurgery with linear accelerators could constitute an effective and safe therapeutic alternative for drug-resistant trigeminal neuralgia. However, existing studies leave important doubts as to optimal treatment doses or the

  7. Search for hadronic resonance in multijet final states with the CDF detector

    International Nuclear Information System (INIS)

    Seitz, Claudia

    2011-01-01

    This thesis describes a search for a new hadronic resonance in 3.2 fb -1 of data using the Collider Detector at Fermilab. The Fermilab Tevatron accelerator collides beams of protons and antiprotons at a center of mass energy of √s = 1.96 TeV. A unique approach is presented to extract multijet resonances from the large QCD background. Although the search is model independent, a pair produced supersymmetric gluino decaying through R-parity violation into three partons each is used to test our sensitivity to new physics. We measure these partons as jets, and require a minimum of six jets in an event. We make use of the kinematic features and correlations and use an ensemble of jet combinations to distinguish signal from multijet QCD backgrounds. Our background estimates also include all-hadronic t(bar t) decays that have a signature similar to signal. We observe no significant excess in an invariant mass range of 77 GeV/c 2 to 240 GeV/c 2 and place 95% C.L. limits on σ(p(bar p) → (tilde g)(tilde g) → 3jets + 3jets) as a function of gluino invariant mass.

  8. Interest in Anesthesia as Reflected by Keyword Searches using Common Search Engines.

    Science.gov (United States)

    Liu, Renyu; García, Paul S; Fleisher, Lee A

    2012-01-23

    Since current general interest in anesthesia is unknown, we analyzed internet keyword searches to gauge general interest in anesthesia in comparison with surgery and pain. The trend of keyword searches from 2004 to 2010 related to anesthesia and anaesthesia was investigated using Google Insights for Search. The trend of number of peer reviewed articles on anesthesia cited on PubMed and Medline from 2004 to 2010 was investigated. The average cost on advertising on anesthesia, surgery and pain was estimated using Google AdWords. Searching results in other common search engines were also analyzed. Correlation between year and relative number of searches was determined with psearch engines may provide different total number of searching results (available posts), the ratios of searching results between some common keywords related to perioperative care are comparable, indicating similar trend. The peer reviewed manuscripts on "anesthesia" and the proportion of papers on "anesthesia and outcome" are trending up. Estimates for spending of advertising dollars are less for anesthesia-related terms when compared to that for pain or surgery due to relative smaller number of searching traffic. General interest in anesthesia (anaesthesia) as measured by internet searches appears to be decreasing. Pain, preanesthesia evaluation, anesthesia and outcome and side effects of anesthesia are the critical areas that anesthesiologists should focus on to address the increasing concerns.

  9. An electrostatic beam line for accelerator mass spectroscopy of exotic particles

    International Nuclear Information System (INIS)

    Elmore, D.; Kubik, P.W.; Hemmick, T.; Teng, R.; Kagan, H.; Haas, P.; Boyd, R.N.; Turner, R.; Nitz, D.; Ciampa, D.; Olsen, S.L.; Gentile, T.; Haelen, T.

    1985-01-01

    An all-electrostatic charged particle spectrometer has been constructed to perform high sensitivity searches for exotic states of matter. This spectrometer consists of an electrosatic beam line capable of mass independent charged particle transport and selection together with time-of-flight, energy loss and total energy detectors. This system has been used in conjunction with the tandem electrostatic accelerator at the Nuclear Structure Research Laboratory of the University of Rochester to search for fractionally charged or anomalously heavy particles. (orig.)

  10. A study of Consistency in the Selection of Search Terms and Search Concepts: A Case Study in National Taiwan University

    Directory of Open Access Journals (Sweden)

    Mu-hsuan Huang

    2001-12-01

    Full Text Available This article analyzes the consistency in the selection of search terms and search contents of college and graduate students in National Taiwan University when they are using PsycLIT CD-ROM database. 31 students conducted pre-assigned searches, doing 59 searches generating 609 search terms. The study finds the consistency in selection of search terms of first level is 22.14% and second level is 35%. These results are similar with others’ researches. About the consistency in search concepts, no matter the overlaps of searched articles or judge relevant articles are lower than other researches. [Article content in Chinese

  11. Acceleration to failure in geophysical signals prior to laboratory rock failure and volcanic eruptions (Invited)

    Science.gov (United States)

    Main, I. G.; Bell, A. F.; Greenhough, J.; Heap, M. J.; Meredith, P. G.

    2010-12-01

    The nucleation processes that ultimately lead to earthquakes, volcanic eruptions, rock bursts in mines, and landslides from cliff slopes are likely to be controlled at some scale by brittle failure of the Earth’s crust. In laboratory brittle deformation experiments geophysical signals commonly exhibit an accelerating trend prior to dynamic failure. Similar signals have been observed prior to volcanic eruptions, including volcano-tectonic earthquake event and moment release rates. Despite a large amount of effort in the search, no such statistically robust systematic trend is found prior to natural earthquakes. Here we describe the results of a suite of laboratory tests on Mount Etna Basalt and other rocks to examine the nature of the non-linear scaling from laboratory to field conditions, notably using laboratory ‘creep’ tests to reduce the boundary strain rate to conditions more similar to those in the field. Seismic event rate, seismic moment release rate and rate of porosity change show a classic ‘bathtub’ graph that can be derived from a simple damage model based on separate transient and accelerating sub-critical crack growth mechanisms, resulting from separate processes of negative and positive feedback in the population dynamics. The signals exhibit clear precursors based on formal statistical model tests using maximum likelihood techniques with Poisson errors. After correcting for the finite loading time of the signal, the results show a transient creep rate that decays as a classic Omori law for earthquake aftershocks, and remarkably with an exponent near unity, as commonly observed for natural earthquake sequences. The accelerating trend follows an inverse power law when fitted in retrospect, i.e. with prior knowledge of the failure time. In contrast the strain measured on the sample boundary shows a less obvious but still accelerating signal that is often absent altogether in natural strain data prior to volcanic eruptions. To test the

  12. Accelerated oxygen-induced retinopathy is a reliable model of ischemia-induced retinal neovascularization.

    Science.gov (United States)

    Villacampa, Pilar; Menger, Katja E; Abelleira, Laura; Ribeiro, Joana; Duran, Yanai; Smith, Alexander J; Ali, Robin R; Luhmann, Ulrich F; Bainbridge, James W B

    2017-01-01

    Retinal ischemia and pathological angiogenesis cause severe impairment of sight. Oxygen-induced retinopathy (OIR) in young mice is widely used as a model to investigate the underlying pathological mechanisms and develop therapeutic interventions. We compared directly the conventional OIR model (exposure to 75% O2 from postnatal day (P) 7 to P12) with an alternative, accelerated version (85% O2 from P8 to P11). We found that accelerated OIR induces similar pre-retinal neovascularization but greater retinal vascular regression that recovers more rapidly. The extent of retinal gliosis is similar but neuroretinal function, as measured by electroretinography, is better maintained in the accelerated model. We found no systemic or maternal morbidity in either model. Accelerated OIR offers a safe, reliable and more rapid alternative model in which pre-retinal neovascularization is similar but retinal vascular regression is greater.

  13. Simultaneous Multislice Echo Planar Imaging With Blipped Controlled Aliasing in Parallel Imaging Results in Higher Acceleration: A Promising Technique for Accelerated Diffusion Tensor Imaging of Skeletal Muscle.

    Science.gov (United States)

    Filli, Lukas; Piccirelli, Marco; Kenkel, David; Guggenberger, Roman; Andreisek, Gustav; Beck, Thomas; Runge, Val M; Boss, Andreas

    2015-07-01

    The aim of this study was to investigate the feasibility of accelerated diffusion tensor imaging (DTI) of skeletal muscle using echo planar imaging (EPI) applying simultaneous multislice excitation with a blipped controlled aliasing in parallel imaging results in higher acceleration unaliasing technique. After federal ethics board approval, the lower leg muscles of 8 healthy volunteers (mean [SD] age, 29.4 [2.9] years) were examined in a clinical 3-T magnetic resonance scanner using a 15-channel knee coil. The EPI was performed at a b value of 500 s/mm2 without slice acceleration (conventional DTI) as well as with 2-fold and 3-fold acceleration. Fractional anisotropy (FA) and mean diffusivity (MD) were measured in all 3 acquisitions. Fiber tracking performance was compared between the acquisitions regarding the number of tracks, average track length, and anatomical precision using multivariate analysis of variance and Mann-Whitney U tests. Acquisition time was 7:24 minutes for conventional DTI, 3:53 minutes for 2-fold acceleration, and 2:38 minutes for 3-fold acceleration. Overall FA and MD values ranged from 0.220 to 0.378 and 1.595 to 1.829 mm2/s, respectively. Two-fold acceleration yielded similar FA and MD values (P ≥ 0.901) and similar fiber tracking performance compared with conventional DTI. Three-fold acceleration resulted in comparable MD (P = 0.199) but higher FA values (P = 0.006) and significantly impaired fiber tracking in the soleus and tibialis anterior muscles (number of tracks, P DTI of skeletal muscle with similar image quality and quantification accuracy of diffusion parameters. This may increase the clinical applicability of muscle anisotropy measurements.

  14. Dual Target Search is Neither Purely Simultaneous nor Purely Successive.

    Science.gov (United States)

    Cave, Kyle R; Menneer, Tamaryn; Nomani, Mohammad S; Stroud, Michael J; Donnelly, Nick

    2017-08-31

    Previous research shows that visual search for two different targets is less efficient than search for a single target. Stroud, Menneer, Cave and Donnelly (2012) concluded that two target colours are represented separately based on modeling the fixation patterns. Although those analyses provide evidence for two separate target representations, they do not show whether participants search simultaneously for both targets, or first search for one target and then the other. Some studies suggest that multiple target representations are simultaneously active, while others indicate that search can be voluntarily simultaneous, or switching, or a mixture of both. Stroud et al.'s participants were not explicitly instructed to use any particular strategy. These data were revisited to determine which strategy was employed. Each fixated item was categorised according to whether its colour was more similar to one target or the other. Once an item similar to one target is fixated, the next fixated item is more likely to be similar to that target than the other, showing that at a given moment during search, one target is generally favoured. However, the search for one target is not completed before search for the other begins. Instead, there are often short runs of one or two fixations to distractors similar to one target, with each run followed by a switch to the other target. Thus, the results suggest that one target is more highly weighted than the other at any given time, but not to the extent that search is purely successive.

  15. The efficiency of similarity-focused comparisons in person perception.

    Science.gov (United States)

    Corcoran, Katja

    2013-01-01

    Comparison processes are ubiquitous in person perception. Comparative thinking can follow two routes: People either search for similarities or for dissimilarities while comparing. Which of these two routes is more efficient? Previous research indicates that people could compare two geometrical figures faster if they focused on similarities rather than dissimilarities. I examine comparisons of people and measure the consumption of cognitive resources as indicator for efficiency. The results confirm an efficiency-advantage of similarity-focused comparisons for social stimuli.

  16. The visible Smith-Purcell radiation search

    International Nuclear Information System (INIS)

    Fernow, R.C.; Kirk, H.G.; Ulc, S. Wang, X.

    1994-03-01

    We report here the results of an experiment at the Accelerator Test Facility at Brookhaven National Laboratory to search for the production of visible radiation from the Smith-Purcell effect using a 3 MeV electron beam. After running the experiment under a variety of conditions we were unable to isolate a definite signal from Smith-Parcell effect. Any Smith-Purcell signal present in the measured radiation was less than 10% of the background signal

  17. Neutrino mixing and future accelerator neutrino experiments

    International Nuclear Information System (INIS)

    Bilenky, S.M.

    1992-01-01

    No evidence for neutrino mixing has been obtained in experiments searching for oscillations with neutrinos from accelerators and reactors. The possible reason is that neutrino masses are too small to produce any sizable effects in the experiments with terrestrial neutrinos. We put forward here the point of view that the reason for that can be traced to the presence of a hierarchy of neutrino masses as well as strength of couplings between lepton families. (orig.)

  18. Accelerating cosmologies from exponential potentials

    International Nuclear Information System (INIS)

    Neupane, Ishwaree P.

    2003-11-01

    It is learnt that exponential potentials of the form V ∼ exp(-2cφ/M p ) arising from the hyperbolic or flux compactification of higher-dimensional theories are of interest for getting short periods of accelerated cosmological expansions. Using a similar potential but derived for the combined case of hyperbolic-flux compactification, we study a four-dimensional flat (or open) FRW cosmologies and give analytic (and numerical) solutions with exponential behavior of scale factors. We show that, for the M-theory motivated potentials, the cosmic acceleration of the universe can be eternal if the spatial curvature of the 4d spacetime is negative, while the acceleration is only transient for a spatially flat universe. We also briefly discuss about the mass of massive Kaluza-Klein modes and the dynamical stabilization of the compact hyperbolic extra dimensions. (author)

  19. Keep Searching and You’ll Find

    DEFF Research Database (Denmark)

    Laursen, Keld

    2012-01-01

    This article critically reviews and synthesizes the contributions found in theoretical and empirical studies of firm-level innovation search processes. It explores the advantages and disadvantages of local and non-local search, discusses organizational responses, and identifies potential exogenous...... different search strategies, but end up with very similar technological profiles in fast-growing technologies. The article concludes by highlighting what we have learnt from the literature and suggesting some new avenues for research....

  20. Power Supplies for High Energy Particle Accelerators

    Science.gov (United States)

    Dey, Pranab Kumar

    2016-06-01

    The on-going research and the development projects with Large Hadron Collider at CERN, Geneva, Switzerland has generated enormous enthusiasm and interest amongst all to know about the ultimate findings on `God's Particle'. This paper has made an attempt to unfold the power supply requirements and the methodology adopted to provide the stringent demand of such high energy particle accelerators during the initial stages of the search for the ultimate particles. An attempt has also been made to highlight the present status on the requirement of power supplies in some high energy accelerators with a view that, precautionary measures can be drawn during design and development from earlier experience which will be of help for the proposed third generation synchrotron to be installed in India at a huge cost.

  1. Similarity-based search of model organism, disease and drug effect phenotypes

    KAUST Repository

    Hoehndorf, Robert; Gruenberger, Michael; Gkoutos, Georgios V; Schofield, Paul N

    2015-01-01

    Background: Semantic similarity measures over phenotype ontologies have been demonstrated to provide a powerful approach for the analysis of model organism phenotypes, the discovery of animal models of human disease, novel pathways, gene functions

  2. Accelerator mass spectrometry for measurement of long-lived radioisotopes.

    Science.gov (United States)

    Elmore, D; Phillips, F M

    1987-05-01

    Particle accelerators, such as those built for research in nuclear physics, can also be used together with magnetic and electrostatic mass analyzers to measure rare isotopes at very low abundance ratios. All molecular ions can be eliminated when accelerated to energies of millions of electron volts. Some atomic isobars can be eliminated with the use of negative ions; others can be separated at high energies by measuring their rate of energy loss in a detector. The long-lived radioisotopes (10)Be, (14)C,(26)A1, 36Cl, and (129)1 can now be measured in small natural samples having isotopic abundances in the range 10(-12) to 10(- 5) and as few as 10(5) atoms. In the past few years, research applications of accelerator mass spectrometry have been concentrated in the earth sciences (climatology, cosmochemistry, environmental chemistry, geochronology, glaciology, hydrology, igneous petrogenesis, minerals exploration, sedimentology, and volcanology), in anthropology and archeology (radiocarbon dating), and in physics (searches for exotic particles and measurement of halflives). In addition, accelerator mass spectrometry may become an important tool for the materials and biological sciences.

  3. Mass spectrometry with accelerators.

    Science.gov (United States)

    Litherland, A E; Zhao, X-L; Kieser, W E

    2011-01-01

    As one in a series of articles on Canadian contributions to mass spectrometry, this review begins with an outline of the history of accelerator mass spectrometry (AMS), noting roles played by researchers at three Canadian AMS laboratories. After a description of the unique features of AMS, three examples, (14)C, (10)Be, and (129)I are given to illustrate the methods. The capabilities of mass spectrometry have been extended by the addition of atomic isobar selection, molecular isobar attenuation, further ion acceleration, followed by ion detection and ion identification at essentially zero dark current or ion flux. This has been accomplished by exploiting the techniques and accelerators of atomic and nuclear physics. In 1939, the first principles of AMS were established using a cyclotron. In 1977 the selection of isobars in the ion source was established when it was shown that the (14)N(-) ion was very unstable, or extremely difficult to create, making a tandem electrostatic accelerator highly suitable for assisting the mass spectrometric measurement of the rare long-lived radioactive isotope (14)C in the environment. This observation, together with the large attenuation of the molecular isobars (13)CH(-) and (12)CH 2(-) during tandem acceleration and the observed very low background contamination from the ion source, was found to facilitate the mass spectrometry of (14)C to at least a level of (14)C/C ~ 6 × 10(-16), the equivalent of a radiocarbon age of 60,000 years. Tandem Accelerator Mass Spectrometry, or AMS, has now made possible the accurate radiocarbon dating of milligram-sized carbon samples by ion counting as well as dating and tracing with many other long-lived radioactive isotopes such as (10)Be, (26)Al, (36)Cl, and (129)I. The difficulty of obtaining large anion currents with low electron affinities and the difficulties of isobar separation, especially for the heavier mass ions, has prompted the use of molecular anions and the search for alternative

  4. Successful betatron acceleration of kiloampere electron rings in RECE-Christa

    International Nuclear Information System (INIS)

    Taggart, D.P.; Parker, M.R.; Hopman, H.J.; Jayakumar, R.; Fleischmann, H.H.

    1984-01-01

    This paper reports on betatron acceleration experiments using the space-charge-neutralized electron rings in the RECE-Christa device. Magnetic probe and x-ray-absorption measurements indicate that electron ring currents of up to 2 kA were accelerated to 3.3 +- 0.3 MeV without indication of instabilities. A similar neutralization and acceleration method also appears applicable to electron rings generated in B/sub theta/-free configurations

  5. The effect of acceleration on turbulent entrainment

    International Nuclear Information System (INIS)

    Breidenthal, Robert E

    2008-01-01

    A new class of self-similar turbulent flows is proposed, which exhibits dramatically reduced entrainment rates. Under strong acceleration, the rotation period of the large-scale vortices is forced to decrease linearly in time. In ordinary unforced turbulence, the rotation period always increases linearly with time, at least in the mean. However, by imposing an exponential acceleration on the flow, the vortex rotation period is forced to become the e-folding timescale of the acceleration. If the e-folding timescale itself decreases linearly in time, the forcing is 'super-exponential', characterized by an acceleration parameter α. Based on dimensional and heuristic arguments, a model suggests that the dissipation rate is an exponential function of α and the dimensions of the conserved quantity of the flow. Acceleration decreases the dissipation and entrainment rates in all canonical laboratory flows except for Rayleigh-Taylor. Experiments of exponential jets and super-exponential transverse jets are in accord with the model. As noted by Johari, acceleration is the only known means of affecting the entrainment rate of the far-field jet. Numerical simulations of Rayleigh-Taylor flow by Cook and Greenough are also consistent. In the limit of large acceleration, vortices do not move far before their rotation period changes substantially. In this sense, extreme acceleration corresponds to stationary vortices.

  6. Analysis of a librarian-mediated literature search service.

    Science.gov (United States)

    Friesen, Carol; Lê, Mê-Linh; Cooke, Carol; Raynard, Melissa

    2015-01-01

    Librarian-mediated literature searching is a key service provided at medical libraries. This analysis outlines ten years of data on 19,248 literature searches and describes information on the volume and frequency of search requests, time spent per search, databases used, and professional designations of the patron requestors. Combined with information on best practices for expert searching and evaluations of similar services, these findings were used to form recommendations on the improvement and standardization of a literature search service at a large health library system.

  7. Scalable Parallel Distributed Coprocessor System for Graph Searching Problems with Massive Data

    Directory of Open Access Journals (Sweden)

    Wanrong Huang

    2017-01-01

    Full Text Available The Internet applications, such as network searching, electronic commerce, and modern medical applications, produce and process massive data. Considerable data parallelism exists in computation processes of data-intensive applications. A traversal algorithm, breadth-first search (BFS, is fundamental in many graph processing applications and metrics when a graph grows in scale. A variety of scientific programming methods have been proposed for accelerating and parallelizing BFS because of the poor temporal and spatial locality caused by inherent irregular memory access patterns. However, new parallel hardware could provide better improvement for scientific methods. To address small-world graph problems, we propose a scalable and novel field-programmable gate array-based heterogeneous multicore system for scientific programming. The core is multithread for streaming processing. And the communication network InfiniBand is adopted for scalability. We design a binary search algorithm to address mapping to unify all processor addresses. Within the limits permitted by the Graph500 test bench after 1D parallel hybrid BFS algorithm testing, our 8-core and 8-thread-per-core system achieved superior performance and efficiency compared with the prior work under the same degree of parallelism. Our system is efficient not as a special acceleration unit but as a processor platform that deals with graph searching applications.

  8. Searching for patterns in TJ-II time evolution signals

    International Nuclear Information System (INIS)

    Farias, G.; Dormido-Canto, S.; Vega, J.; Sanchez, J.; Duro, N.; Dormido, R.; Ochando, M.; Santos, M.; Pajares, G.

    2006-01-01

    Since fusion plasma experiments generate hundreds of signals, it is important for their analysis to have automatic mechanisms for searching for similarities and retrieving specific data from the signal database. This paper describes a technique for searching in the TJ-II database that combines support vector machines and similarity query methods. Firstly, plasma signals are pre-processed by wavelet transform or discrete Fourier transform to reduce the dimensionality of the problem and to extract their main features. Secondly, support vector machines are used to classify a set of signals by reference to an input signal. Finally, similarity query methods (Euclidean distance and bounding envelope) are used to search the set of signals that best matches the input signal

  9. Accelerating Inexact Newton Schemes for Large Systems of Nonlinear Equations

    NARCIS (Netherlands)

    Fokkema, D.R.; Sleijpen, G.L.G.; Vorst, H.A. van der

    Classical iteration methods for linear systems, such as Jacobi iteration, can be accelerated considerably by Krylov subspace methods like GMRES. In this paper, we describe how inexact Newton methods for nonlinear problems can be accelerated in a similar way and how this leads to a general

  10. Perceptual load corresponds with factors known to influence visual search.

    Science.gov (United States)

    Roper, Zachary J J; Cosman, Joshua D; Vecera, Shaun P

    2013-10-01

    One account of the early versus late selection debate in attention proposes that perceptual load determines the locus of selection. Attention selects stimuli at a late processing level under low-load conditions but selects stimuli at an early level under high-load conditions. Despite the successes of perceptual load theory, a noncircular definition of perceptual load remains elusive. We investigated the factors that influence perceptual load by using manipulations that have been studied extensively in visual search, namely target-distractor similarity and distractor-distractor similarity. Consistent with previous work, search was most efficient when targets and distractors were dissimilar and the displays contained homogeneous distractors; search became less efficient when target-distractor similarity increased irrespective of display heterogeneity. Importantly, we used these same stimuli in a typical perceptual load task that measured attentional spillover to a task-irrelevant flanker. We found a strong correspondence between search efficiency and perceptual load; stimuli that generated efficient searches produced flanker interference effects, suggesting that such displays involved low perceptual load. Flanker interference effects were reduced in displays that produced less efficient searches. Furthermore, our results demonstrate that search difficulty, as measured by search intercept, has little bearing on perceptual load. We conclude that rather than be arbitrarily defined, perceptual load might be defined by well-characterized, continuous factors that influence visual search. PsycINFO Database Record (c) 2013 APA, all rights reserved.

  11. Annotated bibliography on high-intensity linear accelerators. [240 citations

    Energy Technology Data Exchange (ETDEWEB)

    Jameson, R.A.; Roybal, E.U.

    1978-01-01

    A technical bibliography covering subjects important to the design of high-intensity beam transport systems and linear accelerators is presented. Space charge and emittance growth are stressed. Subject and author concordances provide cross-reference to detailed citations, which include an abstract and notes on the material. The bibliography resides in a computer database that can be searched for key words and phrases.

  12. Dynamic Search and Working Memory in Social Recall

    Science.gov (United States)

    Hills, Thomas T.; Pachur, Thorsten

    2012-01-01

    What are the mechanisms underlying search in social memory (e.g., remembering the people one knows)? Do the search mechanisms involve dynamic local-to-global transitions similar to semantic search, and are these transitions governed by the general control of attention, associated with working memory span? To find out, we asked participants to…

  13. Microparticles in high-voltage accelerator tubes

    International Nuclear Information System (INIS)

    Griffith, G.L.; Eastham, D.A.

    1979-01-01

    Microparticles with radii greater than 2 μm have been observed in a high voltage vacuum accelerator tube. The charge acquired by most of the particles is similar to the contact charging of a conducting sphere on a plane. (author)

  14. Accelerator mass spectrometry - From DNA to astrophysics

    International Nuclear Information System (INIS)

    Kutschera, W.

    2013-01-01

    A brief review of accelerator mass spectrometry (AMS) is presented. The present work touches on a few technical aspects and recent developments of AMS, and describes two specific applications of AMS, the dating of human DNA with the 14 C bomb peak and the search for superheavy elements in nature. Since two extended general reviews on technical developments in AMS [1] and applications of AMS [2] will appear in 2013, frequent reference to these reviews is made. (authors)

  15. Electromagnetic Structure and Electron Acceleration in Shock–Shock Interaction

    Energy Technology Data Exchange (ETDEWEB)

    Nakanotani, Masaru [Interdisciplinary Graduate School of Engineering Sciences, Kyushu University, 6-1 Kasuga-Koen, Kasuga, Fukuoka, 816-8580 (Japan); Matsukiyo, Shuichi; Hada, Tohru [Faculty of Engineering Sciences, Kyushu University, 6-1 Kasuga-Koen, Kasuga, Fukuoka, 816-8580 (Japan); Mazelle, Christian X., E-mail: nakanot@esst.kyushu-u.ac.jp [IRAP, Université Paul Sabatier Toulouse III-CNRS, F-31028 Toulouse Cedex 4 (France)

    2017-09-10

    A shock–shock interaction is investigated by using a one-dimensional full particle-in-cell simulation. The simulation reproduces the collision of two symmetrical high Mach number quasi-perpendicular shocks. The basic structure of the shocks and ion dynamics is similar to that obtained by previous hybrid simulations. The new aspects obtained here are as follows. Electrons are already strongly accelerated before the two shocks collide through multiple reflection. The reflected electrons self-generate waves upstream between the two shocks before they collide. The waves far upstream are generated through the right-hand resonant instability with the anomalous Doppler effect. The waves generated near the shock are due to firehose instability and have much larger amplitudes than those due to the resonant instability. The high-energy electrons are efficiently scattered by the waves so that some of them gain large pitch angles. Those electrons can be easily reflected at the shock of the other side. The accelerated electrons form a power-law energy spectrum. Due to the accelerated electrons, the pressure of upstream electrons increases with time. This appears to cause the deceleration of the approaching shock speed. The accelerated electrons having sufficiently large Larmor radii are further accelerated through the similar mechanism working for ions when the two shocks are colliding.

  16. Cavity characterization for general use in linear electron accelerators

    International Nuclear Information System (INIS)

    Souza Neto, M.V. de.

    1985-01-01

    The main objective of this work is to is to develop measurement techniques for the characterization of microwave cavities used in linear electron accelerators. Methods are developed for the measurement of parameters that are essential to the design of an accelerator structure using conventional techniques of resonant cavities at low power. Disk-loaded cavities were designed and built, similar to those in most existing linear electron accelerators. As a result, the methods developed and the estimated accuracy were compared with those from other investigators. The results of this work are relevant for the design of cavities with the objective of developing linear electron accelerators. (author) [pt

  17. SHiP: a new facility to search for heavy neutrinos and study $\

    CERN Document Server

    De Serio, Marilisa

    2016-01-01

    SHiP (Search for Hidden Particles) is a newly designed fixed target facility, proposed at the CERN SPS accelerator, with the aim of complementing searches for New Physics at LHC by searching for light long-lived exotic particles with masses below a few GeV/c2. The sensitivity to Heavy Neutrinos will allow for the first time probing a region of the parameter space where Baryogenesis and active neutrino masses and oscillation could also be explained. A dedicated detector, based on OPERA-like bricks, will provide the first observation of the tau anti-neutrino. Moreover, $\

  18. Convectively driven decadal zonal accelerations in Earth's fluid core

    Science.gov (United States)

    More, Colin; Dumberry, Mathieu

    2018-04-01

    Azimuthal accelerations of cylindrical surfaces co-axial with the rotation axis have been inferred to exist in Earth's fluid core on the basis of magnetic field observations and changes in the length-of-day. These accelerations have a typical timescale of decades. However, the physical mechanism causing the accelerations is not well understood. Scaling arguments suggest that the leading order torque averaged over cylindrical surfaces should arise from the Lorentz force. Decadal fluctuations in the magnetic field inside the core, driven by convective flows, could then force decadal changes in the Lorentz torque and generate zonal accelerations. We test this hypothesis by constructing a quasi-geostrophic model of magnetoconvection, with thermally driven flows perturbing a steady, imposed background magnetic field. We show that when the Alfvén number in our model is similar to that in Earth's fluid core, temporal fluctuations in the torque balance are dominated by the Lorentz torque, with the latter generating mean zonal accelerations. Our model reproduces both fast, free Alfvén waves and slow, forced accelerations, with ratios of relative strength and relative timescale similar to those inferred for the Earth's core. The temporal changes in the magnetic field which drive the time-varying Lorentz torque are produced by the underlying convective flows, shearing and advecting the magnetic field on a timescale associated with convective eddies. Our results support the hypothesis that temporal changes in the magnetic field deep inside Earth's fluid core drive the observed decadal zonal accelerations of cylindrical surfaces through the Lorentz torque.

  19. Optimizing Vector-Quantization Processor Architecture for Intelligent Query-Search Applications

    Science.gov (United States)

    Xu, Huaiyu; Mita, Yoshio; Shibata, Tadashi

    2002-04-01

    The architecture of a very large scale integration (VLSI) vector-quantization processor (VQP) has been optimized to develop a general-purpose intelligent query-search agent. The agent performs a similarity-based search in a large-volume database. Although similarity-based search processing is computationally very expensive, latency-free searches have become possible due to the highly parallel maximum-likelihood search architecture of the VQP chip. Three architectures of the VQP chip have been studied and their performances are compared. In order to give reasonable searching results according to the different policies, the concept of penalty function has been introduced into the VQP. An E-commerce real-estate agency system has been developed using the VQP chip implemented in a field-programmable gate array (FPGA) and the effectiveness of such an agency system has been demonstrated.

  20. Acceleration mechanisms for energetic particles in the earth's magnetosphere

    International Nuclear Information System (INIS)

    Schiferl, S.; Fan, C.Y.; Hsieh, K.C.; Erickson, K.N.; Gloeckler, G.; Hovestadt, D.

    1982-01-01

    By analyzing data on energetic particle fluxes measured simultaneously with detector systems on several earth satellites, we searched for signatures of different acceleration mechanisms for these particles. One of the samples is an event observed on ATS-6 and IMP-7. IMP-7 was in the dusk quarter at 38 Rsub(E) while ATS-6 was located at local midnight at a distance of 6.6 Rsub(E). Although the flux variations as observed on the two spacecraft both showed 1.5 min. periodicity, there was a 40-second time lag with IMP-7 behind. The results indicate that the particles are accelerated by magnetic field line annihilation, with the ''x-point'' located at approximately 10 Rsub(E)

  1. Search for Muon Neutrino Disappearance in a Short-Baseline Accelerator Neutrino Beam

    OpenAIRE

    Nakajima, Yasuhiro; Collaboration, for the SciBooNE

    2010-01-01

    We report a search for muon neutrino disappearance in the $\\Delta m^{2}$ region of 0.5-40 $eV^2$ using data from both SciBooNE and MiniBooNE experiments. SciBooNE data provides a constraint on the neutrino flux, so that the sensitivity to $\

  2. Gaussian variable neighborhood search for the file transfer scheduling problem

    Directory of Open Access Journals (Sweden)

    Dražić Zorica

    2016-01-01

    Full Text Available This paper presents new modifications of Variable Neighborhood Search approach for solving the file transfer scheduling problem. To obtain better solutions in a small neighborhood of a current solution, we implement two new local search procedures. As Gaussian Variable Neighborhood Search showed promising results when solving continuous optimization problems, its implementation in solving the discrete file transfer scheduling problem is also presented. In order to apply this continuous optimization method to solve the discrete problem, mapping of uncountable set of feasible solutions into a finite set is performed. Both local search modifications gave better results for the large size instances, as well as better average performance for medium and large size instances. One local search modification achieved significant acceleration of the algorithm. The numerical experiments showed that the results obtained by Gaussian modifications are comparable with the results obtained by standard VNS based algorithms, developed for combinatorial optimization. In some cases Gaussian modifications gave even better results. [Projekat Ministarstava nauke Republike Srbije, br. 174010

  3. Distractor dwelling, skipping, and revisiting determine target absent performance in difficult visual search

    Directory of Open Access Journals (Sweden)

    Gernot Horstmann

    2016-08-01

    Full Text Available Some targets in visual search are more difficult to find than others. In particular, a target that is similar to the distractors is more difficult to find than a target that is dissimilar to the distractors. Efficiency differences between easy and difficult searches are manifest not only in target-present trials but also in target-absent trials. In fact, even physically identical displays are searched through with different efficiency depending on the searched-for target. Here, we monitored eye movements in search for a target similar to the distractors (difficult search versus a target dissimilar to the distractors (easy search. We aimed to examine three hypotheses concerning the causes of differential search efficiencies in target-absent trials: (a distractor dwelling (b distractor skipping, and (c distractor revisiting. Reaction times increased with target similarity which is consistent with existing theories and replicates earlier results. Eye movement data indicated guidance in target trials, even though search was very slow. Dwelling, skipping, and revisiting contributed to low search efficiency in difficult search, with dwelling being the strongest factor. It is argued that differences in dwell time account for a large amount of total search time differences.

  4. Distractor Dwelling, Skipping, and Revisiting Determine Target Absent Performance in Difficult Visual Search

    Science.gov (United States)

    Horstmann, Gernot; Herwig, Arvid; Becker, Stefanie I.

    2016-01-01

    Some targets in visual search are more difficult to find than others. In particular, a target that is similar to the distractors is more difficult to find than a target that is dissimilar to the distractors. Efficiency differences between easy and difficult searches are manifest not only in target-present trials but also in target-absent trials. In fact, even physically identical displays are searched through with different efficiency depending on the searched-for target. Here, we monitored eye movements in search for a target similar to the distractors (difficult search) versus a target dissimilar to the distractors (easy search). We aimed to examine three hypotheses concerning the causes of differential search efficiencies in target-absent trials: (a) distractor dwelling (b) distractor skipping, and (c) distractor revisiting. Reaction times increased with target similarity which is consistent with existing theories and replicates earlier results. Eye movement data indicated guidance in target trials, even though search was very slow. Dwelling, skipping, and revisiting contributed to low search efficiency in difficult search, with dwelling being the strongest factor. It is argued that differences in dwell time account for a large amount of total search time differences. PMID:27574510

  5. A self-similar magnetohydrodynamic model for ball lightnings

    International Nuclear Information System (INIS)

    Tsui, K. H.

    2006-01-01

    Ball lightning is modeled by magnetohydrodynamic (MHD) equations in two-dimensional spherical geometry with azimuthal symmetry. Dynamic evolutions in the radial direction are described by the self-similar evolution function y(t). The plasma pressure, mass density, and magnetic fields are solved in terms of the radial label η. This model gives spherical MHD plasmoids with axisymmetric force-free magnetic field, and spherically symmetric plasma pressure and mass density, which self-consistently determine the polytropic index γ. The spatially oscillating nature of the radial and meridional field structures indicate embedded regions of closed field lines. These regions are named secondary plasmoids, whereas the overall self-similar spherical structure is named the primary plasmoid. According to this model, the time evolution function allows the primary plasmoid expand outward in two modes. The corresponding ejection of the embedded secondary plasmoids results in ball lightning offering an answer as how they come into being. The first is an accelerated expanding mode. This mode appears to fit plasmoids ejected from thundercloud tops with acceleration to ionosphere seen in high altitude atmospheric observations of sprites and blue jets. It also appears to account for midair high-speed ball lightning overtaking airplanes, and ground level high-speed energetic ball lightning. The second is a decelerated expanding mode, and it appears to be compatible to slowly moving ball lightning seen near ground level. The inverse of this second mode corresponds to an accelerated inward collapse, which could bring ball lightning to an end sometimes with a cracking sound

  6. Personnel hazards from medical electron accelerator photoneutrons

    International Nuclear Information System (INIS)

    McCall, R.C.; Jenkins, T.M.; Shore, R.A.; LaRiviere, P.D.

    1979-12-01

    For medical accelerators, neutron penetration through the room entry door is the major personnel hazard. Most therapy accelerator rooms are designed with at least a rudimentary maze to avoid the use of massive doors. Often, however, the maze may be similar to those shown in scale outline drawings of some medical electron accelerator rooms where the authors have made neutron measurements outside the doors which were of different thicknesses and compositions. The results are tabulated. It should be noted that there can be significant dose equivalents (H) at the door when a maze is inadequate, and that all three components - fast neutron, thermal neutron, and neutron capture γ rays - can be equally important

  7. Hardwired interlock system with fault latchability and annunciation panel for electron accelerators

    International Nuclear Information System (INIS)

    Mukesh Kumar; Roychoudhury, P.; Nimje, V.T.

    2011-01-01

    A hard-wired interlock system is designed, developed, installed and tested to ensure healthy status for interlock signals, coming from the various sub-systems of electron accelerators as digital inputs. Each electron accelerator has approximately ninety-six interlock signals. Hardwired Interlock system consists of twelve-channel 19 inches rack mountable hard-wired interlock module of 4U height. Digital inputs are fed to the hard-wired interlock module in the form of 24V dc for logic 'TRUE' and 0V for logic 'FALSE'. These signals are flow signals to ensure cooling of the various sub-systems, signals from the klystron modulator system in RF Linac to ensure its healthy state to start, signals from high voltage system of DC accelerator, vacuum signals from vacuum system to ensure proper vacuum in the electron accelerator, door interlock signals, air flow signals, and area search and secure signals. This hard-wired interlock system ensures the safe start-up, fault annunciation and alarm, fault latchablity, and fail-safe operation of the electron accelerators. Safe start-up feature ensures that beam generation system can be made ON only when cooling of all the electron accelerator sub-systems are confirmed, all the fault signals of high voltage generation system are attended, proper vacuum is achieved inside the beam transport system, all the doors are closed and various areas have been searched and secured manually. Fault annunciation and alarm feature ensures that during the start up and operation of the electron accelerators, if any fault is there, that fault signal window keeps on flashing with red colour and alarm is sounded till the operator acknowledges the fault. Once acknowledged, flashing and alarm stops but display of the window in red colour remains till the operator clears the fault. Fault latchability feature ensures that if any fault has happened, accelerator cannot be started again till the operator resets that interlock signal. Fail-safe feature ensures

  8. Notions of similarity for computational biology models

    KAUST Repository

    Waltemath, Dagmar

    2016-03-21

    Computational models used in biology are rapidly increasing in complexity, size, and numbers. To build such large models, researchers need to rely on software tools for model retrieval, model combination, and version control. These tools need to be able to quantify the differences and similarities between computational models. However, depending on the specific application, the notion of similarity may greatly vary. A general notion of model similarity, applicable to various types of models, is still missing. Here, we introduce a general notion of quantitative model similarities, survey the use of existing model comparison methods in model building and management, and discuss potential applications of model comparison. To frame model comparison as a general problem, we describe a theoretical approach to defining and computing similarities based on different model aspects. Potentially relevant aspects of a model comprise its references to biological entities, network structure, mathematical equations and parameters, and dynamic behaviour. Future similarity measures could combine these model aspects in flexible, problem-specific ways in order to mimic users\\' intuition about model similarity, and to support complex model searches in databases.

  9. Notions of similarity for computational biology models

    KAUST Repository

    Waltemath, Dagmar; Henkel, Ron; Hoehndorf, Robert; Kacprowski, Tim; Knuepfer, Christian; Liebermeister, Wolfram

    2016-01-01

    Computational models used in biology are rapidly increasing in complexity, size, and numbers. To build such large models, researchers need to rely on software tools for model retrieval, model combination, and version control. These tools need to be able to quantify the differences and similarities between computational models. However, depending on the specific application, the notion of similarity may greatly vary. A general notion of model similarity, applicable to various types of models, is still missing. Here, we introduce a general notion of quantitative model similarities, survey the use of existing model comparison methods in model building and management, and discuss potential applications of model comparison. To frame model comparison as a general problem, we describe a theoretical approach to defining and computing similarities based on different model aspects. Potentially relevant aspects of a model comprise its references to biological entities, network structure, mathematical equations and parameters, and dynamic behaviour. Future similarity measures could combine these model aspects in flexible, problem-specific ways in order to mimic users' intuition about model similarity, and to support complex model searches in databases.

  10. Search for high-energy neutrinos from bright GRBs with ANTARES

    NARCIS (Netherlands)

    Albert, A.; André, M.; Anghinolfi, M.; Anton, G.; Ardid, M.; Aubert, J.-J.; Avgitas, T.; Baret, B.; Barrios-Martí, J.; Basa, S.; Bertin, V.; Biagi, S.; Bormuth, R.; Bourret, S.; Bouwhuis, M.C.; Bruijn, R.; Brunner, J.; Busto, J.; Capone, A.; Caramete, L.; Carr, J.; Celli, S.; Chiarusi, T.; Circella, M.; Coelho, J.A.B.; Coleiro, A.; Coniglione, R.; Costantini, H.; Coyle, P.; Creusot, A.; Deschamps, A.; De Bonis, G.; Distefano, C.; Di Palma, I.; Donzaud, C.; Dornic, D.; Drouhin, D.; Eberl, T.; El Bojaddaini, I.; Elsässer, D.; Enzenhöfer, A.; Felis, I.; Fusco, L.A.; Galatà, S.; Gay, P.; Geißelsöder, S.; Geyer, K.; Giordano, V.; Gleixner, A.; Glotin, H.; Grégoire, T.; Gracia-Ruiz, R.; Graf, K.; Hallmann, S.; van Haren, H.; Heijboer, A.J.; Hello, Y.; Hernández-Rey, J.J.; Hößl, J.; Hofestädt, J.; Hugon, C.; Illuminati, G.; James, C.W.; de Jong, M.; Jongen, M.; Kadler, M.; Kalekin, O.; Katz, U.; Kießling, D.; Kouchner, A.; Kreter, M.; Kreykenbohm, I.; Kulikovskiy, V.; Lachaud, C.; Lahmann, R.; Lefèvre, D.; Leonora, E.; Lotze, M.; Loucatos, S.; Marcelin, M.; Margiotta, A.; Marinelli, A.; Martínez-Mora, J.A.; Mathieu, A.; Mele, R.; Melis, K.; Michael, T.; Migliozzi, P.; Moussa, A.; Mueller, C.; Nezri, E.; Pavalas, G.E.; Pellegrino, C.; Perrina, C.; Piattelli, P.; Popa, V.; Pradier, T.; Quinn, L.; Racca, C.; Riccobene, G.; Roensch, K.; Sánchez-Losa, A.; Saldaña, M.; Salvadori, I.; Samtleben, D.F.E.; Sanguineti, M.; Sapienza, P.; Schnabel, J.; Schüssler, F.; Seitz, T.; Sieger, C.; Spurio, M.; Stolarczyk, T.; Taiuti, M.; Tayalati, Y.; Trovato, A.; Tselengidou, M.; Turpin, D.; Tönnis, C.; Vallage, B.; Vallée, C.; Van Elewyck, V.; Vivolo, D.; Vizzocca, A.; Wagner, S.; Wilms, J.; Zornoza, J.D.; Zúñiga, J.

    2017-01-01

    Gamma-ray bursts are thought to be sites of hadronic acceleration, thus neutrinos are expected from the decay of charged particles, produced in pγ interactions. The methods and results of a search for muon neutrinos in the data of the ANTARES neutrino telescope from four bright GRBs (GRB 080916C,

  11. Distribution uniformity of laser-accelerated proton beams

    Science.gov (United States)

    Zhu, Jun-Gao; Zhu, Kun; Tao, Li; Xu, Xiao-Han; Lin, Chen; Ma, Wen-Jun; Lu, Hai-Yang; Zhao, Yan-Ying; Lu, Yuan-Rong; Chen, Jia-Er; Yan, Xue-Qing

    2017-09-01

    Compared with conventional accelerators, laser plasma accelerators can generate high energy ions at a greatly reduced scale, due to their TV/m acceleration gradient. A compact laser plasma accelerator (CLAPA) has been built at the Institute of Heavy Ion Physics at Peking University. It will be used for applied research like biological irradiation, astrophysics simulations, etc. A beamline system with multiple quadrupoles and an analyzing magnet for laser-accelerated ions is proposed here. Since laser-accelerated ion beams have broad energy spectra and large angular divergence, the parameters (beam waist position in the Y direction, beam line layout, drift distance, magnet angles etc.) of the beamline system are carefully designed and optimised to obtain a radially symmetric proton distribution at the irradiation platform. Requirements of energy selection and differences in focusing or defocusing in application systems greatly influence the evolution of proton distributions. With optimal parameters, radially symmetric proton distributions can be achieved and protons with different energy spread within ±5% have similar transverse areas at the experiment target. Supported by National Natural Science Foundation of China (11575011, 61631001) and National Grand Instrument Project (2012YQ030142)

  12. Notions of similarity for systems biology models.

    Science.gov (United States)

    Henkel, Ron; Hoehndorf, Robert; Kacprowski, Tim; Knüpfer, Christian; Liebermeister, Wolfram; Waltemath, Dagmar

    2018-01-01

    Systems biology models are rapidly increasing in complexity, size and numbers. When building large models, researchers rely on software tools for the retrieval, comparison, combination and merging of models, as well as for version control. These tools need to be able to quantify the differences and similarities between computational models. However, depending on the specific application, the notion of 'similarity' may greatly vary. A general notion of model similarity, applicable to various types of models, is still missing. Here we survey existing methods for the comparison of models, introduce quantitative measures for model similarity, and discuss potential applications of combined similarity measures. To frame model comparison as a general problem, we describe a theoretical approach to defining and computing similarities based on a combination of different model aspects. The six aspects that we define as potentially relevant for similarity are underlying encoding, references to biological entities, quantitative behaviour, qualitative behaviour, mathematical equations and parameters and network structure. We argue that future similarity measures will benefit from combining these model aspects in flexible, problem-specific ways to mimic users' intuition about model similarity, and to support complex model searches in databases. © The Author 2016. Published by Oxford University Press.

  13. Dusty-Plasma Particle Accelerator

    Science.gov (United States)

    Foster, John E.

    2005-01-01

    A dusty-plasma apparatus is being investigated as means of accelerating nanometer- and micrometer-sized particles. Applications for the dusty-plasma particle accelerators fall into two classes: Simulation of a variety of rapidly moving dust particles and micrometeoroids in outer-space environments that include micrometeoroid streams, comet tails, planetary rings, and nebulae and Deposition or implantation of nanoparticles on substrates for diverse industrial purposes that could include hardening, increasing thermal insulation, altering optical properties, and/or increasing permittivities of substrate materials. Relative to prior apparatuses used for similar applications, dusty-plasma particle accelerators offer such potential advantages as smaller size, lower cost, less complexity, and increased particle flux densities. A dusty-plasma particle accelerator exploits the fact that an isolated particle immersed in plasma acquires a net electric charge that depends on the relative mobilities of electrons and ions. Typically, a particle that is immersed in a low-temperature, partially ionized gas, wherein the average kinetic energy of electrons exceeds that of ions, causes the particle to become negatively charged. The particle can then be accelerated by applying an appropriate electric field. A dusty-plasma particle accelerator (see figure) includes a plasma source such as a radio-frequency induction discharge apparatus containing (1) a shallow cup with a biasable electrode to hold the particles to be accelerated and (2) a holder for the substrate on which the particles are to impinge. Depending on the specific design, a pair of electrostatic-acceleration grids between the substrate and discharge plasma can be used to both collimate and further accelerate particles exiting the particle holder. Once exposed to the discharge plasma, the particles in the cup quickly acquire a negative charge. Application of a negative voltage pulse to the biasable electrode results in the

  14. Accelerator driven light water fast reactor (revisiting to the accelerator LWR fuel regenerator)

    International Nuclear Information System (INIS)

    Takahashi, H.; Zhang, J.

    1999-01-01

    A tight-latticed, high-enriched Pu fuel reactor cooled by water or by super-critical steam has a high neutron economy, similar to that of Na-or Pb-cooled fast reactor. Operating in a subcritical condition by providing spallation neutrons, this Pu-fueled reactor can run safely, despite the positive coolant void coefficients. It can be used to transmute the proliferation-prone Pu into proliferation-resistive U-233 fuel using thorium as the fertile material. Rather than employing the large linear accelerator proposed for the LWR fuel regenerator studied in the INFCE program, a small circular accelerator, such as a cyclotron or a Fixed Field Alternating Gradient Synchrotron (FFAG), can run a large power reactor in a slightly subcritical reactor using control rods, on-line fuel reshuffling, and slightly graded proton-beam injection. Some thoughts on improving the reliability of the proton accelerator, on transmutation of the long-lived fission products of Tc-99, and I-129, and the future direction of the development of the fast reactor are discussed. (author)

  15. McMaster Accelerator Laboratory annual report, 1984

    International Nuclear Information System (INIS)

    1984-11-01

    Summaries of projects in progress constitute the major portion of this report. The tandem accelerator operated well during most of the year, with a number of heavy ion runs carried out at 10.44 MV. Tritium beams and polarized deuteron beams have been used extensively. Experiments using the multiplicity filter to study high spin states continue. An experiment was carried out relating to the search for a neutrino mass. Activity also continued in other areas of physics, engineering and medicine

  16. C IV BROAD ABSORPTION LINE ACCELERATION IN SLOAN DIGITAL SKY SURVEY QUASARS

    Energy Technology Data Exchange (ETDEWEB)

    Grier, C. J.; Brandt, W. N.; Trump, J. R.; Schneider, D. P.; Sun, M.; Beatty, T. G. [Department of Astronomy and Astrophysics, The Pennsylvania State University, 525 Davey Laboratory, University Park, PA 16802 (United States); Hall, P. B. [Department of Physics and Astronomy, York University, Toronto, ON M3J 1P3 (Canada); Filiz Ak, N. [Faculty of Sciences, Department of Astronomy and Space Sciences, Erciyes University, 38039 Kayseri (Turkey); Anderson, S. F. [Department of Astronomy, University of Washington, Box 351580, Seattle, WA 98195 (United States); Green, Paul J. [Harvard Smithsonian Center for Astrophysics, 60 Garden St, Cambridge, MA 02138 (United States); Vivek, M.; Brownstein, Joel R. [Department of Physics and Astronomy, University of Utah, 115 S. 1400 E., Salt Lake City, UT 84112 (United States); Roman-Lopes, Alexandre, E-mail: grier@psu.edu [Departamento de Fisica, Facultad de Ciencias, Universidad de La Serena, Cisternas 1200, La Serena (Chile)

    2016-06-20

    We present results from the largest systematic investigation of broad absorption line (BAL) acceleration to date. We use spectra of 140 quasars from three Sloan Digital Sky Survey programs to search for global velocity offsets in BALs over timescales of ≈2.5–5.5 years in the quasar rest frame. We carefully select acceleration candidates by requiring monolithic velocity shifts over the entire BAL trough, avoiding BALs with velocity shifts that might be caused by profile variability. The C iv BALs of two quasars show velocity shifts consistent with the expected signatures of BAL acceleration, and the BAL of one quasar shows a velocity-shift signature of deceleration. In our two acceleration candidates, we see evidence that the magnitude of the acceleration is not constant over time; the magnitudes of the change in acceleration for both acceleration candidates are difficult to produce with a standard disk-wind model or via geometric projection effects. We measure upper limits to acceleration and deceleration for 76 additional BAL troughs and find that the majority of BALs are stable to within about 3% of their mean velocities. The lack of widespread acceleration/deceleration could indicate that the gas producing most BALs is located at large radii from the central black hole and/or is not currently strongly interacting with ambient material within the host galaxy along our line of sight.

  17. Search for superdeformation in {sup 144,145}Gd

    Energy Technology Data Exchange (ETDEWEB)

    Rzaca-Urban, T [Warsaw Univ. (Poland); Lieder, R M; Strahle, K; Utzelmann, S; Gast, W; Kutchin, D; Schnare, H [Forschungszentrum Juelich GmbH (Germany). Inst. fuer Kernphysik; Georgiev, A [Sofia Univ. (Bulgaria); Marti, G [Comision Nacional de Energia Atomica, Buenos Aires (Argentina). Dept. de Fisica; Spohr, K [Forschungszentrum Juelich GmbH (Germany). Inst. fuer Kernphysik; [Hahn-Meitner-Institut Berlin GmbH (Germany); Brentano, P; Eberth, J; Eschenauer, M; Freund, S; Ott, E; Theuerkauf, J; Wolters, H; Zell, K O [Koeln Univ. (Germany). Inst. fuer Kernphysik; Maier, K H; Grave, H; Bach, C; Heese, J; Kluge, H; Schramm, M; Schubarth, R [Hahn-Meitner-Institut Berlin GmbH (Germany)

    1992-08-01

    Two experiments were performed and analyzed to search for superdeformation band in {sup 144,145}Gd by bombarding {sup 108,110}Pd targets with {sup 40A}r ions with energies of 182 and 189 MeV respectively, at the VICKSI accelerator of the Hahn-Meitner Institut, Berlin. The gamma radiation was measured with the OSIRIS spectrometer. An extended level system was proposed. 8 refs., 2 figs.

  18. Adaptive and accelerated tracking-learning-detection

    Science.gov (United States)

    Guo, Pengyu; Li, Xin; Ding, Shaowen; Tian, Zunhua; Zhang, Xiaohu

    2013-08-01

    An improved online long-term visual tracking algorithm, named adaptive and accelerated TLD (AA-TLD) based on Tracking-Learning-Detection (TLD) which is a novel tracking framework has been introduced in this paper. The improvement focuses on two aspects, one is adaption, which makes the algorithm not dependent on the pre-defined scanning grids by online generating scale space, and the other is efficiency, which uses not only algorithm-level acceleration like scale prediction that employs auto-regression and moving average (ARMA) model to learn the object motion to lessen the detector's searching range and the fixed number of positive and negative samples that ensures a constant retrieving time, but also CPU and GPU parallel technology to achieve hardware acceleration. In addition, in order to obtain a better effect, some TLD's details are redesigned, which uses a weight including both normalized correlation coefficient and scale size to integrate results, and adjusts distance metric thresholds online. A contrastive experiment on success rate, center location error and execution time, is carried out to show a performance and efficiency upgrade over state-of-the-art TLD with partial TLD datasets and Shenzhou IX return capsule image sequences. The algorithm can be used in the field of video surveillance to meet the need of real-time video tracking.

  19. Towards MRI-guided linear accelerator control: gating on an MRI accelerator.

    Science.gov (United States)

    Crijns, S P M; Kok, J G M; Lagendijk, J J W; Raaymakers, B W

    2011-08-07

    To boost the possibilities of image guidance in radiotherapy by providing images with superior soft-tissue contrast during treatment, we pursue diagnostic quality MRI functionality integrated with a linear accelerator. Large respiration-induced semi-periodic target excursions hamper treatment of cancer of the abdominal organs. Methods to compensate in real time for such motion are gating and tracking. These strategies are most effective in cases where anatomic motion can be visualized directly, which supports the use of an integrated MRI accelerator. We establish here an infrastructure needed to realize gated radiation delivery based on MR feedback and demonstrate its potential as a first step towards more advanced image guidance techniques. The position of a phantom subjected to one-dimensional periodic translation is tracked with the MR scanner. Real-time communication with the MR scanner and control of the radiation beam are established. Based on the time-resolved position of the phantom, gated radiation delivery to the phantom is realized. Dose distributions for dynamic delivery conditions with varying gating windows are recorded on gafchromic film. The similarity between dynamically and statically obtained dose profiles gradually increases as the gating window is decreased. With gating windows of 5 mm, we obtain sharp dose profiles. We validate our gating implementation by comparing measured dose profiles to theoretical profiles calculated using the knowledge of the imposed motion pattern. Excellent correspondence is observed. At the same time, we show that real-time on-line reconstruction of the accumulated dose can be performed using time-resolved target position information. This facilitates plan adaptation not only on a fraction-to-fraction scale but also during one fraction, which is especially valuable in highly accelerated treatment strategies. With the currently established framework and upcoming improvements to our prototype-integrated MRI accelerator

  20. Predictive Performance Tuning of OpenACC Accelerated Applications

    KAUST Repository

    Siddiqui, Shahzeb

    2014-05-04

    Graphics Processing Units (GPUs) are gradually becoming mainstream in supercomputing as their capabilities to significantly accelerate a large spectrum of scientific applications have been clearly identified and proven. Moreover, with the introduction of high level programming models such as OpenACC [1] and OpenMP 4.0 [2], these devices are becoming more accessible and practical to use by a larger scientific community. However, performance optimization of OpenACC accelerated applications usually requires an in-depth knowledge of the hardware and software specifications. We suggest a prediction-based performance tuning mechanism [3] to quickly tune OpenACC parameters for a given application to dynamically adapt to the execution environment on a given system. This approach is applied to a finite difference kernel to tune the OpenACC gang and vector clauses for mapping the compute kernels into the underlying accelerator architecture. Our experiments show a significant performance improvement against the default compiler parameters and a faster tuning by an order of magnitude compared to the brute force search tuning.

  1. Using the Dual-Target Cost to Explore the Nature of Search Target Representations

    Science.gov (United States)

    Stroud, Michael J.; Menneer, Tamaryn; Cave, Kyle R.; Donnelly, Nick

    2012-01-01

    Eye movements were monitored to examine search efficiency and infer how color is mentally represented to guide search for multiple targets. Observers located a single color target very efficiently by fixating colors similar to the target. However, simultaneous search for 2 colors produced a dual-target cost. In addition, as the similarity between…

  2. Search for Hidden Particles: a new experiment proposal

    Science.gov (United States)

    De Lellis, G.

    2015-08-01

    Searches for new physics with accelerators are being performed at the LHC, looking for high massive particles coupled to matter with ordinary strength. We propose a new experiment meant to search for very weakly coupled particles in the few GeV mass domain. The existence of such particles, foreseen in different models beyond the Standard Model, is largely unexplored from the experimental point of view. A beam dump facility, built at CERN in the north area, using 400 GeV protons is a copious factory of charmed hadrons and it could be used to probe the existence of such particles. The beam dump is also an ideal source of tau neutrinos, the less known particle in the Standard Model. In particular, tau anti-neutrinos have not been observed so far. We therefore propose an experiment to search for hidden particles and study tau neutrino physics at the same time.

  3. The NSC 16 MV tandem accelerator control system

    International Nuclear Information System (INIS)

    Ajith Kumar, B.P.; Kannaiyan, J.; Sugathan, P.; Bhowmik, R.K.

    1994-01-01

    The computerized control system for the 16 MV Pelletron accelerator at the Nuclear Science Centre runs on a PC-AT 386 computer. Devices in the accelerator are interfaced to the computer by using a CAMAC Serial Highway. The software, written in C, is Database oriented and supports many features useful for the accelerator operation. The control console consists of an EGA monitor, keyboard, assignable control knobs and meters, a diagrammatic display showing the overall status of the machine and a similar panel for showing the status of radiation safety interlocks. The system has been operational for the past three years and is discussed below. (orig.)

  4. Supersonic jets of hydrogen and helium for laser wakefield acceleration

    CERN Document Server

    Svensson, K.; Wojda, F.; Senje, L.; Burza, M.; Aurand, B.; Genoud, G.; Persson, A.; Wahlström, C.-G.; Lundh, O.

    2016-01-01

    The properties of laser wakefield accelerated electrons in supersonic gas flows of hydrogen and helium are investigated. At identical backing pressure, we find that electron beams emerging from helium show large variations in their spectral and spatial distributions, whereas electron beams accelerated in hydrogen plasmas show a higher degree of reproducibility. In an experimental investigation of the relation between neutral gas density and backing pressure, it is found that the resulting number density for helium is ∼30% higher than for hydrogen at the same backing pressure. The observed differences in electron beam properties between the two gases can thus be explained by differences in plasma electron density. This interpretation is verified by repeating the laser wakefield acceleration experiment using similar plasma electron densities for the two gases, which then yielded electron beams with similar properties.

  5. Supersonic jets of hydrogen and helium for laser wakefield acceleration

    Directory of Open Access Journals (Sweden)

    K. Svensson

    2016-05-01

    Full Text Available The properties of laser wakefield accelerated electrons in supersonic gas flows of hydrogen and helium are investigated. At identical backing pressure, we find that electron beams emerging from helium show large variations in their spectral and spatial distributions, whereas electron beams accelerated in hydrogen plasmas show a higher degree of reproducibility. In an experimental investigation of the relation between neutral gas density and backing pressure, it is found that the resulting number density for helium is ∼30% higher than for hydrogen at the same backing pressure. The observed differences in electron beam properties between the two gases can thus be explained by differences in plasma electron density. This interpretation is verified by repeating the laser wakefield acceleration experiment using similar plasma electron densities for the two gases, which then yielded electron beams with similar properties.

  6. Diffusive Shock Acceleration and Turbulent Reconnection

    Science.gov (United States)

    Garrel, Christian; Vlahos, Loukas; Isliker, Heinz; Pisokas, Theophilos

    2018-05-01

    Diffusive Shock Acceleration (DSA) cannot efficiently accelerate particles without the presence of self-consistently generated or pre-existing strong turbulence (δB/B ˜ 1) in the vicinity of the shock. The problem we address in this article is: if large amplitude magnetic disturbances are present upstream and downstream of a shock then Turbulent Reconnection (TR) will set in and will participate not only in the elastic scattering of particles but also in their heating and acceleration. We demonstrate that large amplitude magnetic disturbances and Unstable Current Sheets (UCS), spontaneously formed in the strong turbulence in the vicinity of a shock, can accelerate particles as efficiently as DSA in large scale systems and on long time scales. We start our analysis with "elastic" scatterers upstream and downstream and estimate the energy distribution of particles escaping from the shock, recovering the well known results from the DSA theory. Next we analyze the additional interaction of the particles with active scatterers (magnetic disturbances and UCS) upstream and downstream of the shock. We show that the asymptotic energy distribution of the particles accelerated by DSA/TR has very similar characteristics with the one due to DSA alone, but the synergy of DSA with TR is much more efficient: The acceleration time is an order of magnitude shorter and the maximum energy reached two orders of magnitude higher. We claim that DSA is the dominant acceleration mechanism in a short period before TR is established, and then strong turbulence will dominate the heating and acceleration of the particles. In other words, the shock serves as the mechanism to set up a strongly turbulent environment, in which the acceleration mechanism will ultimately be the synergy of DSA and TR.

  7. Resampling to accelerate cross-correlation searches for continuous gravitational waves from binary systems

    Science.gov (United States)

    Meadors, Grant David; Krishnan, Badri; Papa, Maria Alessandra; Whelan, John T.; Zhang, Yuanhao

    2018-02-01

    Continuous-wave (CW) gravitational waves (GWs) call for computationally-intensive methods. Low signal-to-noise ratio signals need templated searches with long coherent integration times and thus fine parameter-space resolution. Longer integration increases sensitivity. Low-mass x-ray binaries (LMXBs) such as Scorpius X-1 (Sco X-1) may emit accretion-driven CWs at strains reachable by current ground-based observatories. Binary orbital parameters induce phase modulation. This paper describes how resampling corrects binary and detector motion, yielding source-frame time series used for cross-correlation. Compared to the previous, detector-frame, templated cross-correlation method, used for Sco X-1 on data from the first Advanced LIGO observing run (O1), resampling is about 20 × faster in the costliest, most-sensitive frequency bands. Speed-up factors depend on integration time and search setup. The speed could be reinvested into longer integration with a forecast sensitivity gain, 20 to 125 Hz median, of approximately 51%, or from 20 to 250 Hz, 11%, given the same per-band cost and setup. This paper's timing model enables future setup optimization. Resampling scales well with longer integration, and at 10 × unoptimized cost could reach respectively 2.83 × and 2.75 × median sensitivities, limited by spin-wandering. Then an O1 search could yield a marginalized-polarization upper limit reaching torque-balance at 100 Hz. Frequencies from 40 to 140 Hz might be probed in equal observing time with 2 × improved detectors.

  8. Search for the 36Cl isotope in natural samples by cyclotron or tandem accelerators

    International Nuclear Information System (INIS)

    Brissaud, I.; Kalifa, J.; Laurnet, H.

    1981-01-01

    Because of the Half-life of 36 Cl (305.000 years), the measurement of the concentration of 36 Cl/Cl in natural samples is essential to the dating of very old ground waters. Thus, this measurement can provide an unique tool in fundamental research (such as knowledge of slow ground water movements) or in applied research (such as the evaluation of fossil water natural resources... etc...). We are more especially involved in age determination of groundwaters from confined aquifers in regions with presently arid or semi-arid climates where deep aquifers were recharged during post pluvial episodes. Accelerators as mass spectrometers have been used for approximately three years for the detection of different isotopes and especially 36 Cl. As a first step our group has tried to evaluate the possibilities of different accelerators by measuring the concentration 36 Cl/Cl of different samples prepared artificially. Then, we have begun to measure the 36 Cl presence in Sahara ground water samples

  9. Excitation of Accelerating Plasma Waves by Counter-propagating Laser Beams

    International Nuclear Information System (INIS)

    Gennady Shvets; Nathaniel J. Fisch; Alexander Pukhov

    2001-01-01

    Generation of accelerating plasma waves using two counter-propagating laser beams is considered. Colliding-beam accelerator requires two laser pulses: the long pump and the short timing beam. We emphasize the similarities and differences between the conventional laser wakefield accelerator and the colliding-beam accelerator (CBA). The highly nonlinear nature of the wake excitation is explained using both nonlinear optics and plasma physics concepts. Two regimes of CBA are considered: (i) the short-pulse regime, where the timing beam is shorter than the plasma period, and (ii) the parametric excitation regime, where the timing beam is longer than the plasma period. Possible future experiments are also outlined

  10. A similarity-based data warehousing environment for medical images.

    Science.gov (United States)

    Teixeira, Jefferson William; Annibal, Luana Peixoto; Felipe, Joaquim Cezar; Ciferri, Ricardo Rodrigues; Ciferri, Cristina Dutra de Aguiar

    2015-11-01

    A core issue of the decision-making process in the medical field is to support the execution of analytical (OLAP) similarity queries over images in data warehousing environments. In this paper, we focus on this issue. We propose imageDWE, a non-conventional data warehousing environment that enables the storage of intrinsic features taken from medical images in a data warehouse and supports OLAP similarity queries over them. To comply with this goal, we introduce the concept of perceptual layer, which is an abstraction used to represent an image dataset according to a given feature descriptor in order to enable similarity search. Based on this concept, we propose the imageDW, an extended data warehouse with dimension tables specifically designed to support one or more perceptual layers. We also detail how to build an imageDW and how to load image data into it. Furthermore, we show how to process OLAP similarity queries composed of a conventional predicate and a similarity search predicate that encompasses the specification of one or more perceptual layers. Moreover, we introduce an index technique to improve the OLAP query processing over images. We carried out performance tests over a data warehouse environment that consolidated medical images from exams of several modalities. The results demonstrated the feasibility and efficiency of our proposed imageDWE to manage images and to process OLAP similarity queries. The results also demonstrated that the use of the proposed index technique guaranteed a great improvement in query processing. Copyright © 2015 Elsevier Ltd. All rights reserved.

  11. Prior knowledge of category size impacts visual search.

    Science.gov (United States)

    Wu, Rachel; McGee, Brianna; Echiverri, Chelsea; Zinszer, Benjamin D

    2018-03-30

    Prior research has shown that category search can be similar to one-item search (as measured by the N2pc ERP marker of attentional selection) for highly familiar, smaller categories (e.g., letters and numbers) because the finite set of items in a category can be grouped into one unit to guide search. Other studies have shown that larger, more broadly defined categories (e.g., healthy food) also can elicit N2pc components during category search, but the amplitude of these components is typically attenuated. Two experiments investigated whether the perceived size of a familiar category impacts category and exemplar search. We presented participants with 16 familiar company logos: 8 from a smaller category (social media companies) and 8 from a larger category (entertainment/recreation manufacturing companies). The ERP results from Experiment 1 revealed that, in a two-item search array, search was more efficient for the smaller category of logos compared to the larger category. In a four-item search array (Experiment 2), where two of the four items were placeholders, search was largely similar between the category types, but there was more attentional capture by nontarget members from the same category as the target for smaller rather than larger categories. These results support a growing literature on how prior knowledge of categories affects attentional selection and capture during visual search. We discuss the implications of these findings in relation to assessing cognitive abilities across the lifespan, given that prior knowledge typically increases with age. © 2018 Society for Psychophysiological Research.

  12. Accelerated behavioural development changes fine-scale search behaviour and spatial memory in honey bees (Apis mellifera L.).

    Science.gov (United States)

    Ushitani, Tomokazu; Perry, Clint J; Cheng, Ken; Barron, Andrew B

    2016-02-01

    Normally, worker honey bees (Apis mellifera) begin foraging when more than 2 weeks old as adults, but if individual bees or the colony is stressed, bees often begin foraging precociously. Here, we examined whether bees that accelerated their behavioural development to begin foraging precociously differed from normal-aged foragers in cognitive performance. We used a social manipulation to generate precocious foragers from small experimental colonies and tested their performance in a free-flight visual reversal learning task, and a test of spatial memory. To assess spatial memory, bees were trained to learn the location of a small sucrose feeder within an array of three landmarks. In tests, the feeder and one landmark were removed and the search behaviour of the bees was recorded. Performance of precocious and normal-aged foragers did not differ in a visual reversal learning task, but the two groups showed a clear difference in spatial memory. Flight behaviour suggested normal-aged foragers were better able to infer the position of the removed landmark and feeder relative to the remaining landmarks than precocious foragers. Previous studies have documented the cognitive decline of old foragers, but this is the first suggestion of a cognitive deficit in young foragers. These data imply that worker honey bees continue their cognitive development during the adult stage. These findings may also help to explain why precocious foragers perform quite poorly as foragers and have a higher than normal loss rate. © 2016. Published by The Company of Biologists Ltd.

  13. Parallel content-based sub-image retrieval using hierarchical searching.

    Science.gov (United States)

    Yang, Lin; Qi, Xin; Xing, Fuyong; Kurc, Tahsin; Saltz, Joel; Foran, David J

    2014-04-01

    The capacity to systematically search through large image collections and ensembles and detect regions exhibiting similar morphological characteristics is central to pathology diagnosis. Unfortunately, the primary methods used to search digitized, whole-slide histopathology specimens are slow and prone to inter- and intra-observer variability. The central objective of this research was to design, develop, and evaluate a content-based image retrieval system to assist doctors for quick and reliable content-based comparative search of similar prostate image patches. Given a representative image patch (sub-image), the algorithm will return a ranked ensemble of image patches throughout the entire whole-slide histology section which exhibits the most similar morphologic characteristics. This is accomplished by first performing hierarchical searching based on a newly developed hierarchical annular histogram (HAH). The set of candidates is then further refined in the second stage of processing by computing a color histogram from eight equally divided segments within each square annular bin defined in the original HAH. A demand-driven master-worker parallelization approach is employed to speed up the searching procedure. Using this strategy, the query patch is broadcasted to all worker processes. Each worker process is dynamically assigned an image by the master process to search for and return a ranked list of similar patches in the image. The algorithm was tested using digitized hematoxylin and eosin (H&E) stained prostate cancer specimens. We have achieved an excellent image retrieval performance. The recall rate within the first 40 rank retrieved image patches is ∼90%. Both the testing data and source code can be downloaded from http://pleiad.umdnj.edu/CBII/Bioinformatics/.

  14. Meson spectroscopy at the Serpukhov accelerator

    International Nuclear Information System (INIS)

    Prokoshkin, Yu.D.

    1987-01-01

    At present meson spectroscopy is a dominating direction of experimental studies at the IHEP accelerator. The main attention is paid to the search and study of exotic meson states. This report presents some new results obtained recently at the IHEP accelerator. First, observation is made of a narrow 1750 MeV meson decays into ηη. Above |t| ∼ 0.2 (GeV-c) 2 (t: a square of 4-momentum transferred to a neutron), a clear narrow peak appears in Mηη mass spectrum at a mass of 1750 MeV. Second, 2.22 GeV narrow meson decaying into η'η is described. At present only premature conclusions have been obtained in this area and the situation with ζ is not clear. Third, a study is made on new exotic tensor meson χ(1810) decaying into 4π deg and ηη channels. The decay M deg → 4π deg is a very promissing instrument in search for exotic mesons. Next, G(1590)-meson as a scalar glueball is discussed. BR(G → 4π deg) has a large value, an independent evidence of the exotic nature of G(1590)-meson. Experimental data obtained on all essential decay channels of G(1590)-meson allows to give a selfconsistent description of its production and decay as the scalar glueball, a particle with the dominating gluon component. The final two parts deal with exotic vector meson C(1480) decaying into ψπ deg and observation of D(1285) → ψγ decay. (Nogami, K.)

  15. What can we expect from future accelerators

    International Nuclear Information System (INIS)

    Panofsky, W.K.H.

    1984-06-01

    This talk covers a general but highly subjective overview of the expectation for new accelerator development. An updated version of the Livingston chart demonstrates the exponential growth in time of the equivalent laboratory energy of accelerators. A similar Livingston chart pertaining only to electron-positron colliders shows an exponential growth but in the past only one technology - electron-positron storage rings - have been responsible for this development. The question addressed is whether the type of exponential growth reflected by these two charts can be sustained in the future

  16. RAG-3D: a search tool for RNA 3D substructures

    Science.gov (United States)

    Zahran, Mai; Sevim Bayrak, Cigdem; Elmetwaly, Shereef; Schlick, Tamar

    2015-01-01

    To address many challenges in RNA structure/function prediction, the characterization of RNA's modular architectural units is required. Using the RNA-As-Graphs (RAG) database, we have previously explored the existence of secondary structure (2D) submotifs within larger RNA structures. Here we present RAG-3D—a dataset of RNA tertiary (3D) structures and substructures plus a web-based search tool—designed to exploit graph representations of RNAs for the goal of searching for similar 3D structural fragments. The objects in RAG-3D consist of 3D structures translated into 3D graphs, cataloged based on the connectivity between their secondary structure elements. Each graph is additionally described in terms of its subgraph building blocks. The RAG-3D search tool then compares a query RNA 3D structure to those in the database to obtain structurally similar structures and substructures. This comparison reveals conserved 3D RNA features and thus may suggest functional connections. Though RNA search programs based on similarity in sequence, 2D, and/or 3D structural elements are available, our graph-based search tool may be advantageous for illuminating similarities that are not obvious; using motifs rather than sequence space also reduces search times considerably. Ultimately, such substructuring could be useful for RNA 3D structure prediction, structure/function inference and inverse folding. PMID:26304547

  17. A search for sterile neutrinos in MINOS

    International Nuclear Information System (INIS)

    Osiecki, Thomas Henry

    2007-01-01

    MINOS, the Main Injector Neutrino Oscillation Search, is a long baseline neutrino oscillation experiment based at Fermilab National Accelerator Laboratory. The experiment uses a neutrino beam, which is measured 1 km downstream from its origin in the Near detector at Fermilab and then 735 km later in the Far detector at the Soudan mine. By comparing these two measurements, MINOS can attain a very high precision for parameters in the atmospheric sector of neutrino oscillations. In addition to precisely determining Δm 23 2 and θ 23 through the disappearance of ν μ , MINOS is able to measure ν μ → ν sterile by looking for a deficit in the number of neutral current interactions seen in the Far detector. In this thesis, we present the results of a search for sterile neutrinos in MINOS

  18. Search for Muon neutrino → Tau neutrino oscillations motivation and feasibility

    International Nuclear Information System (INIS)

    Zacek, V.

    1988-01-01

    Theoretical prejudices derived from solar-neutrino matter oscillations and assumptions of neutrino mass hierarchies suggest, that neutrino-oscillations are observable in laboratory with mass parameters of Δm 2 = 10 -3 -10 4 eV 2 . In particular Muon neutrino → Tau neutrino appearance searches at accelerators seem strongly motivated

  19. Monte-Carlo Tree Search for Poly-Y

    NARCIS (Netherlands)

    Wevers, L.; te Brinke, Steven

    2014-01-01

    Monte-Carlo tree search (MCTS) is a heuristic search algorithm that has recently been very successful in the games of Go and Hex. In this paper, we describe an MCTS player for the game of Poly-Y, which is a connection game similar to Hex. Our player won the CodeCup 2014 AI programming competition.

  20. Fast protein tertiary structure retrieval based on global surface shape similarity.

    Science.gov (United States)

    Sael, Lee; Li, Bin; La, David; Fang, Yi; Ramani, Karthik; Rustamov, Raif; Kihara, Daisuke

    2008-09-01

    Characterization and identification of similar tertiary structure of proteins provides rich information for investigating function and evolution. The importance of structure similarity searches is increasing as structure databases continue to expand, partly due to the structural genomics projects. A crucial drawback of conventional protein structure comparison methods, which compare structures by their main-chain orientation or the spatial arrangement of secondary structure, is that a database search is too slow to be done in real-time. Here we introduce a global surface shape representation by three-dimensional (3D) Zernike descriptors, which represent a protein structure compactly as a series expansion of 3D functions. With this simplified representation, the search speed against a few thousand structures takes less than a minute. To investigate the agreement between surface representation defined by 3D Zernike descriptor and conventional main-chain based representation, a benchmark was performed against a protein classification generated by the combinatorial extension algorithm. Despite the different representation, 3D Zernike descriptor retrieved proteins of the same conformation defined by combinatorial extension in 89.6% of the cases within the top five closest structures. The real-time protein structure search by 3D Zernike descriptor will open up new possibility of large-scale global and local protein surface shape comparison. 2008 Wiley-Liss, Inc.

  1. Privacy-Preserving Patient Similarity Learning in a Federated Environment: Development and Analysis.

    Science.gov (United States)

    Lee, Junghye; Sun, Jimeng; Wang, Fei; Wang, Shuang; Jun, Chi-Hyuck; Jiang, Xiaoqian

    2018-04-13

    There is an urgent need for the development of global analytic frameworks that can perform analyses in a privacy-preserving federated environment across multiple institutions without privacy leakage. A few studies on the topic of federated medical analysis have been conducted recently with the focus on several algorithms. However, none of them have solved similar patient matching, which is useful for applications such as cohort construction for cross-institution observational studies, disease surveillance, and clinical trials recruitment. The aim of this study was to present a privacy-preserving platform in a federated setting for patient similarity learning across institutions. Without sharing patient-level information, our model can find similar patients from one hospital to another. We proposed a federated patient hashing framework and developed a novel algorithm to learn context-specific hash codes to represent patients across institutions. The similarities between patients can be efficiently computed using the resulting hash codes of corresponding patients. To avoid security attack from reverse engineering on the model, we applied homomorphic encryption to patient similarity search in a federated setting. We used sequential medical events extracted from the Multiparameter Intelligent Monitoring in Intensive Care-III database to evaluate the proposed algorithm in predicting the incidence of five diseases independently. Our algorithm achieved averaged area under the curves of 0.9154 and 0.8012 with balanced and imbalanced data, respectively, in κ-nearest neighbor with κ=3. We also confirmed privacy preservation in similarity search by using homomorphic encryption. The proposed algorithm can help search similar patients across institutions effectively to support federated data analysis in a privacy-preserving manner. ©Junghye Lee, Jimeng Sun, Fei Wang, Shuang Wang, Chi-Hyuck Jun, Xiaoqian Jiang. Originally published in JMIR Medical Informatics (http

  2. A sensitive search for dark energy through chameleon scalar fields using neutron interferometry

    International Nuclear Information System (INIS)

    Snow, W M; Li, K; Skavysh, V; Arif, M; Huber, M; Heacock, B; Young, A R; Pushin, D

    2015-01-01

    The physical origin of the dark energy, which is postulated to cause the accelerated expansion rate of the universe, is one of the major open questions of cosmology. A large subset of theories postulate the existence of a scalar field with a nonlinear coupling to matter chosen so that the effective range and/or strength of the field is greatly suppressed unless the source is placed in vacuum. We describe a measurement using neutron interferometry which can place a stringent upper bound on chameleon fields proposed as a solution to the problem of the origin of dark energy of the universe in the regime with a strongly-nolinear coupling term. In combination with other experiments searching for exotic short-range forces and laser-based measurements, slow neutron experiments are capable of eliminating this and many similar types of scalar-field-based dark energy models by laboratory experiments

  3. Fast Depiction Invariant Visual Similarity for Content Based Image Retrieval Based on Data-driven Visual Similarity using Linear Discriminant Analysis

    Science.gov (United States)

    Wihardi, Y.; Setiawan, W.; Nugraha, E.

    2018-01-01

    On this research we try to build CBIRS based on Learning Distance/Similarity Function using Linear Discriminant Analysis (LDA) and Histogram of Oriented Gradient (HoG) feature. Our method is invariant to depiction of image, such as similarity of image to image, sketch to image, and painting to image. LDA can decrease execution time compared to state of the art method, but it still needs an improvement in term of accuracy. Inaccuracy in our experiment happen because we did not perform sliding windows search and because of low number of negative samples as natural-world images.

  4. Ultra-relativistic ion acceleration in the laser-plasma interactions

    Energy Technology Data Exchange (ETDEWEB)

    Huang Yongsheng; Wang Naiyan; Tang Xiuzhang; Shi Yijin [China Institute of Atomic Energy, Beijing 102413 (China); Xueqing Yan [Institute of Heavy Ion Physics, Peking University, Beijing 100871 (China)

    2012-09-15

    An analytical relativistic model is proposed to describe the relativistic ion acceleration in the interaction of ultra-intense laser pulses with thin-foil plasmas. It is found that there is a critical value of the ion momentum to make sure that the ions are trapped by the light sail and accelerated in the radiation pressure acceleration (RPA) region. If the initial ion momentum is smaller than the critical value, that is in the classical case of RPA, the potential has a deep well and traps the ions to be accelerated, as the same described before by simulation results [Eliasson et al., New J. Phys. 11, 073006 (2009)]. There is a new ion acceleration region different from RPA, called ultra-relativistic acceleration, if the ion momentum exceeds the critical value. In this case, ions will experience a potential downhill. The dependence of the ion momentum and the self-similar variable at the ion front on the acceleration time has been obtained. In the ultra-relativistic limit, the ion momentum at the ion front is proportional to t{sup 4/5}, where t is the acceleration time. In our analytical hydrodynamical model, it is naturally predicted that the ion distribution from RPA is not monoenergetic, although the phase-stable acceleration mechanism is effective. The critical conditions of the laser and plasma parameters which identify the two acceleration modes have been achieved.

  5. Ultra-relativistic ion acceleration in the laser-plasma interactions

    International Nuclear Information System (INIS)

    Huang Yongsheng; Wang Naiyan; Tang Xiuzhang; Shi Yijin; Xueqing Yan

    2012-01-01

    An analytical relativistic model is proposed to describe the relativistic ion acceleration in the interaction of ultra-intense laser pulses with thin-foil plasmas. It is found that there is a critical value of the ion momentum to make sure that the ions are trapped by the light sail and accelerated in the radiation pressure acceleration (RPA) region. If the initial ion momentum is smaller than the critical value, that is in the classical case of RPA, the potential has a deep well and traps the ions to be accelerated, as the same described before by simulation results [Eliasson et al., New J. Phys. 11, 073006 (2009)]. There is a new ion acceleration region different from RPA, called ultra-relativistic acceleration, if the ion momentum exceeds the critical value. In this case, ions will experience a potential downhill. The dependence of the ion momentum and the self-similar variable at the ion front on the acceleration time has been obtained. In the ultra-relativistic limit, the ion momentum at the ion front is proportional to t 4/5 , where t is the acceleration time. In our analytical hydrodynamical model, it is naturally predicted that the ion distribution from RPA is not monoenergetic, although the phase-stable acceleration mechanism is effective. The critical conditions of the laser and plasma parameters which identify the two acceleration modes have been achieved.

  6. Dirac's Dream - the Search for the Magnetic Monopole

    International Nuclear Information System (INIS)

    Pinfold, James L.

    2010-01-01

    I first quickly summarize the history of the Magnetic Monopole leading to the quantum theory of magnetic charge that started with a 1931 paper by Paul Dirac who showed that the existence of magnetic monopoles was consistent with Maxwell's equations only if electric charges are quantized. Next I will briefly review the status of monopole searches. Last, but not least I discuss in more detail the MoEDAL experiment--the latest accelerator experiment designed to search for direct production of magnetic monopoles or dyons (particles with electric and magnetic charge) and other highly ionizing particles - such as heavy (pseudo-) stable particles with conventional electric charge - at the LHC. The MoEDAL experiment employs nuclear track-etch detectors deployed in the VELO vertex region of the LHCb experiment.

  7. Self-similar compression of a magnetized plasma filled liner

    International Nuclear Information System (INIS)

    Felber, F.S.; Liberman, M.A.; Velikovich, A.L.

    1985-01-01

    New analytic, one-dimensional, self-similar solutions of magnetohydrodynamic equations describing the compression of a magnetized plasma by a thin cylindrical liner are presented. The solutions include several features that have not been included in an earlier self-similar solution of the equations of ideal magnetohydrodynamics. These features are the effects of finite plasma electrical conductivity, induction heating, thermal conductivity and related thermogalvanomagnetic effects, plasma turbulence, and plasma boundary effects. These solutions have been motivated by recent suggestions for production of ultrahigh magnetic fields by new methods. The methods involve radially imploding plasmas in which axial magnetic fields have been entrained. These methods may be capable of producing controlled magnetic fields up to approx. = 100 MG. Specific methods of implosion suggested were by ablative radial acceleration of a liner by a laser and by a gas-puff Z pinch. The model presented here addresses the first of these methods. The solutions derived here are used to estimate magnetic flux losses out of the compression volume, and to indicate conditions under which an impulsively-accelerated, plasma-filled liner may compress an axial magnetic field to large magnitude

  8. Accelerator developments since the ZGS by ZGS people

    International Nuclear Information System (INIS)

    Cho, Y.

    1994-01-01

    The ZGS was a facility, as well as an organization, where people got together to pursue a common goal of doing exciting science of the day. In this note, the authors describe notable events related to accelerators and accelerator people since the closing of the ZGS program some 15 years ago. Many of the same ZGS people have been carrying out the state-of-the art accelerator work around the Laboratory with the same dedication that characterized their work in the earlier days. First the authors describe how the activities were re-organized after the closing of the ZGS, the migration of people, and the organizational evolution since that time. Doing this shows the similarity between the birth of the ZGS and the birth of the Advanced Photon Source (APS). Then, some of the accelerator work by the former ZGS people are described. These include: (1) Intense Pulsed Neutron Source (IPNS), (2) GeV Electron Microtron (GEM), (3) Wake Field Accelerator Test Facility, (4) Advanced Photon Source, and (5) IPNS Upgrade

  9. PubData: search engine for bioinformatics databases worldwide

    OpenAIRE

    Vand, Kasra; Wahlestedt, Thor; Khomtchouk, Kelly; Sayed, Mohammed; Wahlestedt, Claes; Khomtchouk, Bohdan

    2016-01-01

    We propose a search engine and file retrieval system for all bioinformatics databases worldwide. PubData searches biomedical data in a user-friendly fashion similar to how PubMed searches biomedical literature. PubData is built on novel network programming, natural language processing, and artificial intelligence algorithms that can patch into the file transfer protocol servers of any user-specified bioinformatics database, query its contents, retrieve files for download, and adapt to the use...

  10. Database automation of accelerator operation

    International Nuclear Information System (INIS)

    Casstevens, B.J.; Ludemann, C.A.

    1983-01-01

    Database management techniques are applied to automating the setup of operating parameters of a heavy-ion accelerator used in nuclear physics experiments. Data files consist of ion-beam attributes, the interconnection assignments of the numerous power supplies and magnetic elements that steer the ions' path through the system, the data values that represent the electrical currents supplied by the power supplies, as well as the positions of motors and status of mechanical actuators. The database is relational and permits searching on ranges of any subset of the ion-beam attributes. A file selected from the database is used by the control software to replicate the ion beam conditions by adjusting the physical elements in a continuous manner

  11. GEMINI: a computationally-efficient search engine for large gene expression datasets.

    Science.gov (United States)

    DeFreitas, Timothy; Saddiki, Hachem; Flaherty, Patrick

    2016-02-24

    Low-cost DNA sequencing allows organizations to accumulate massive amounts of genomic data and use that data to answer a diverse range of research questions. Presently, users must search for relevant genomic data using a keyword, accession number of meta-data tag. However, in this search paradigm the form of the query - a text-based string - is mismatched with the form of the target - a genomic profile. To improve access to massive genomic data resources, we have developed a fast search engine, GEMINI, that uses a genomic profile as a query to search for similar genomic profiles. GEMINI implements a nearest-neighbor search algorithm using a vantage-point tree to store a database of n profiles and in certain circumstances achieves an [Formula: see text] expected query time in the limit. We tested GEMINI on breast and ovarian cancer gene expression data from The Cancer Genome Atlas project and show that it achieves a query time that scales as the logarithm of the number of records in practice on genomic data. In a database with 10(5) samples, GEMINI identifies the nearest neighbor in 0.05 sec compared to a brute force search time of 0.6 sec. GEMINI is a fast search engine that uses a query genomic profile to search for similar profiles in a very large genomic database. It enables users to identify similar profiles independent of sample label, data origin or other meta-data information.

  12. Relations between perceptual and conceptual scope: how global versus local processing fits a focus on similarity versus dissimilarity.

    Science.gov (United States)

    Förster, Jens

    2009-02-01

    Nine studies showed a bidirectional link (a) between a global processing style and generation of similarities and (b) between a local processing style and generation of dissimilarities. In Experiments 1-4, participants were primed with global versus local perception styles and then asked to work on an allegedly unrelated generation task. Across materials, participants generated more similarities than dissimilarities after global priming, whereas for participants with local priming, the opposite was true. Experiments 5-6 demonstrated a bidirectional link whereby participants who were first instructed to search for similarities attended more to the gestalt of a stimulus than to its details, whereas the reverse was true for those who were initially instructed to search for dissimilarities. Because important psychological variables are correlated with processing styles, in Experiments 7-9, temporal distance, a promotion focus, and high power were predicted and shown to enhance the search for similarities, whereas temporal proximity, a prevention focus, and low power enhanced the search for dissimilarities. (PsycINFO Database Record (c) 2009 APA, all rights reserved).

  13. Effect of accelerated matter in neutron optics

    International Nuclear Information System (INIS)

    Frank, A. I.; Geltenbort, P.; Jentschel, M.; Kustov, D. V.; Kulin, G. V.; Nosov, V. G.; Strepetov, A. N.

    2008-01-01

    Results of experiments aimed at observing the change in the energy of a neutron traversing an accelerated refractive sample are reported. The experiments were performed with ultracold neutrons, the energy transfer in these experiments being ±(2-6) x 10 -10 eV. The results suggest the existence of the effect and agree with theoretical predictions to a precision higher than 10%. A similar effect was previously predicted for the change in the frequency of an electromagnetic wave traversing an accelerated dielectric slab. In all probability, the effect has a very general nature, but it is presently observed only in neutron optics.

  14. Use of the calorimeter in the dosimetry for electron accelerators

    International Nuclear Information System (INIS)

    Chavez B, A.

    1991-02-01

    The measure of different radiation types, with specific dosemeters, requires that the absorbed dose should be measured with accuracy by some common standard. The existent problem around the dosimetry of accelerated electrons has forced to the development of diverse detector types that after having analyzed the characteristics; dependability and reproducibility are used as dosemeters. Recently the calorimeters have been developed, with the purpose of carrying out dosimetry for electron accelerators. The RISO laboratory in Denmark, in it 10 MeV accelerator had been used for the dosimetry those water calorimeters, later on, using the principle of the water calorimeter, it was designing one similar, for the accelerator of 400 keV. Recently manufactured simple calorimeters of graphite have been used, which can be used in both accelerators of 10 MeV and 400 keV. (Author)

  15. Stanford Linear Accelerator Center selects Verity Ultraseek for public and internal Web Sites

    CERN Multimedia

    2004-01-01

    Verity Inc., a provider of enterprise software has announced the latest version of its powerful, downloadable Verity(R) Ultraseek(R) enterprise search engine is being used by the Stanford Linear Accelerator Center, a research facility funded by the U.S. Department of Energy and operated by Stanford University (1/2 page).

  16. Survival Processing Enhances Visual Search Efficiency.

    Science.gov (United States)

    Cho, Kit W

    2018-05-01

    Words rated for their survival relevance are remembered better than when rated using other well-known memory mnemonics. This finding, which is known as the survival advantage effect and has been replicated in many studies, suggests that our memory systems are molded by natural selection pressures. In two experiments, the present study used a visual search task to examine whether there is likewise a survival advantage for our visual systems. Participants rated words for their survival relevance or for their pleasantness before locating that object's picture in a search array with 8 or 16 objects. Although there was no difference in search times among the two rating scenarios when set size was 8, survival processing reduced visual search times when set size was 16. These findings reflect a search efficiency effect and suggest that similar to our memory systems, our visual systems are also tuned toward self-preservation.

  17. Pentaquark searches with ALICE

    CERN Document Server

    Bobulska, Dana

    2016-01-01

    In this report we present the results of the data analysis for searching for possible invariant mass signals from pentaquarks in the ALICE data. Analysis was based on filtered data from real p-Pb events at psNN=5.02 TeV collected in 2013. The motivation for this project was the recent discovery of pentaquark states by the LHCb collaboration (c ¯ cuud resonance P+ c ) [1]. The search for similar not yet observed pentaquarks is an interesting research topic [2]. In this analysis we searched for a s ¯ suud pentaquark resonance P+ s and its possible decay channel to f meson and proton. The ALICE detector is well suited for the search of certain candidates thanks to its low material budget and strong PID capabilities. Additionally we might expect the production of such particles in ALICE as in heavy-ion and proton-ion collisions the thermal models describes well the particle yields and ratios [3]. Therefore it is reasonable to expect other species of hadrons, including also possible pentaquarks, to be produced w...

  18. Efficient SAT engines for concise logics: Accelerating proof search for zero-one linear constraint systems

    DEFF Research Database (Denmark)

    Fränzle, Martin; Herde, Christian

    2003-01-01

    We investigate the problem of generalizing acceleration techniques as found in recent satisfiability engines for conjunctive normal forms (CNFs) to linear constraint systems over the Booleans. The rationale behind this research is that rewriting the propositional formulae occurring in e.g. bounde...

  19. New particle searches at CDF

    International Nuclear Information System (INIS)

    Nodulman, L.J.

    1995-09-01

    One of the fundamental roles of a general purpose detector exploring, by means of increasing luminosity, higher and higher mass reach, is to search for new particles and exotic phenomena. This is a continuing effort for the CDF collaboration, and will report on several searches using about 20 pb -1 from the 1992/93 run labelled open-quotes run 1aclose quotes and ∼50 of the 90 pb -1 so far from the current open-quotes run 1b.close quotes These are mostly preliminary analyses, typically using a total of 70 pb -1 . Our limits on SUSY using missing E T with jets as well as three leptons are discussed elsewhere; results from the D0 collaboration are similar. I will discuss searches for additional vector bosons Z' and W', second generation scalar leptoquarks, as well as a broad search for objects decaying into jet pairs, including b-tagged jet pairs. I will also describe two events which do not fit in comfortably with either the standard model or a phenomenologically motivated search

  20. Search for fractional charge

    International Nuclear Information System (INIS)

    Turner, R.E.

    1984-01-01

    A search was made for fractional charges of the form Z plus two-thirds e, where Z is an integer. It was assumed that the charges exist in natural form bound with other fractional charges in neutral molecules. It was further assumed that these neutral molecules are present in air. Two concentration schemes were employed. One sample was derived from the waste gases from a xenon distillation plant. This assumes that high mass, low vapor pressure components of air are concentrated along with the xenon. The second sample involved ionizing air, allowing a brief recombination period, and then collecting residual ions on the surface of titanium discs. Both samples were analyzed at the University of Rochester in a system using a tandem Van de Graff to accelerate particles through an essentially electrostatic beam handling system. The detector system employed both a Time of Flight and an energy-sensitive gas ionization detector. In the most sensitive mode of analysis, a gas absorber was inserted in the beam path to block the intense background. The presence of an absorber limited the search to highly penetrating particles. Effectively, this limited the search to particles with low Z and masses greater than roughly fifty GeV. The final sensitivities attained were on the order of 1 x 10 -20 for the ionized air sample and 1 x 10 -21 for the gas sample. A discussion of the caveats that could reduce the actual level of sensitivity is included

  1. Simulation of visual search in the natural 2-D situation

    Directory of Open Access Journals (Sweden)

    Blanka Borin

    2004-08-01

    Full Text Available The goal of this research was to imitate the process of visual search in a natural two-dimensional situation and also to investigate the influence of variable features on the speed of the visual search. The experiment was designed upon one of the most influential theories in the research field of the visual search phenomenon – The Feature Integration Theory (Treisman, 1982. Although the FIT theory claims, that in case of a larger number of synchronous targets the mechanism of attention serially directs the mental processing from one target towards another, the results of our experiment has shown the possibility of not just serial but also parallel visual search. The results of the experiment have also shown that the similarity between features of the target and its surroundings takes effect on the speed of the target recognition. If the features are very similar or if there is no difference between the target and its surroundings, the visual search for the target is longer in comparison to the visual search for the target, which features don't resemble the target's surroundings.

  2. Quantum random-walk search algorithm

    International Nuclear Information System (INIS)

    Shenvi, Neil; Whaley, K. Birgitta; Kempe, Julia

    2003-01-01

    Quantum random walks on graphs have been shown to display many interesting properties, including exponentially fast hitting times when compared with their classical counterparts. However, it is still unclear how to use these novel properties to gain an algorithmic speedup over classical algorithms. In this paper, we present a quantum search algorithm based on the quantum random-walk architecture that provides such a speedup. It will be shown that this algorithm performs an oracle search on a database of N items with O(√(N)) calls to the oracle, yielding a speedup similar to other quantum search algorithms. It appears that the quantum random-walk formulation has considerable flexibility, presenting interesting opportunities for development of other, possibly novel quantum algorithms

  3. CASE in CERN's accelerator sector

    International Nuclear Information System (INIS)

    Albrecht, A.; Cabas-Alonso, A.; Chevrier, F.

    1992-01-01

    As in the software industry where computer aided software engineering (CASE) methodologies and tools are commonly used, CERN endeavours to introduce this technology to improve the efficiency of designing, producing and maintaining software. A large project is currently under development in the administrative area whereas a dedicated group had been set up to evaluate state of the art techniques for software development relating to physics experiments. A similar activity, though on a smaller scale, has been initiated in the accelerator sector also in view of the large amount of software that will be required by the LEP200 and the LHC projects. This paper briefly describes this technology and gives an account of current experience with the use of CASE methods and tools for technical projects in the accelerator sector at CERN. (author)

  4. Applications of High Intensity Proton Accelerators

    Science.gov (United States)

    Raja, Rajendran; Mishra, Shekhar

    2010-06-01

    collider and neutrino factory - summary of working group 2 / J. Galambos, R. Garoby and S. Geer -- Prospects for a very high power CW SRF linac / R. A. Rimmer -- Indian accelerator program for ADS applications / V. C. Sahni and P. Singh -- Ion accelerator activities at VECC (particularly, operating at low temperature) / R. K. Bhandari -- Chinese efforts in high intensity proton accelerators / S. Fu, J. Wang and S. Fang -- ADSR activity in the UK / R. J. Barlow -- ADS development in Japan / K. Kikuchi -- Project-X, SRF, and very large power stations / C. M. Ankenbrandt, R. P. Johnson and M. Popovic -- Power production and ADS / R. Raja -- Experimental neutron source facility based on accelerator driven system / Y. Gohar -- Transmutation mission / W. S. Yang -- Safety performance and issues / J. E. Cahalan -- Spallation target design for accelerator-driven systems / Y. Gohar -- Design considerations for accelerator transmutation of waste system / W. S. Yang -- Japan ADS program / T. Sasa -- Overview of members states' and IAEA activities in the field of Accelerator Driven Systems (ADS) / A. Stanculescu -- Linac for ADS applications - accelerator technologies / R. W. Garnett and R. L. Sheffield -- SRF linacs and accelerator driven sub-critical systems - summary working groups 3 & 4 / J. Delayen -- Production of Actinium-225 via high energy proton induced spallation of Thorium-232 / J. Harvey ... [et al.] -- Search for the electric dipole moment of Radium-225 / R. J. Holt, Z.-T. Lu and R. Mueller -- SRF linac and material science and medicine - summary of working group 5 / J. Nolen, E. Pitcher and H. Kirk.

  5. Hierarchical Matching of Traffic Information Services Using Semantic Similarity

    Directory of Open Access Journals (Sweden)

    Zongtao Duan

    2018-01-01

    Full Text Available Service matching aims to find the information similar to a given query, which has numerous applications in web search. Although existing methods yield promising results, they are not applicable for transportation. In this paper, we propose a multilevel matching method based on semantic technology, towards efficiently searching the traffic information requested. Our approach is divided into two stages: service clustering, which prunes candidate services that are not promising, and functional matching. The similarity at function level between services is computed by grouping the connections between the services into inheritance and noninheritance relationships. We also developed a three-layer framework with a semantic similarity measure that requires less time and space cost than existing method since the scale of candidate services is significantly smaller than the whole transportation network. The OWL_TC4 based service set was used to verify the proposed approach. The accuracy of offline service clustering reached 93.80%, and it reduced the response time to 651 ms when the total number of candidate services was 1000. Moreover, given the different thresholds for the semantic similarity measure, the proposed mixed matching model did better in terms of recall and precision (i.e., up to 72.7% and 80%, respectively, for more than 1000 services compared to the compared models based on information theory and taxonomic distance. These experimental results confirmed the effectiveness and validity of service matching for responding quickly and accurately to user queries.

  6. Visual search for features and conjunctions in development.

    Science.gov (United States)

    Lobaugh, N J; Cole, S; Rovet, J F

    1998-12-01

    Visual search performance was examined in three groups of children 7 to 12 years of age and in young adults. Colour and orientation feature searches and a conjunction search were conducted. Reaction time (RT) showed expected improvements in processing speed with age. Comparisons of RT's on target-present and target-absent trials were consistent with parallel search on the two feature conditions and with serial search in the conjunction condition. The RT results indicated searches for feature and conjunctions were treated similarly for children and adults. However, the youngest children missed more targets at the largest array sizes, most strikingly in conjunction search. Based on an analysis of speed/accuracy trade-offs, we suggest that low target-distractor discriminability leads to an undersampling of array elements, and is responsible for the high number of misses in the youngest children.

  7. Functional similarities between the dictyostelium protein AprA and the human protein dipeptidyl-peptidase IV.

    Science.gov (United States)

    Herlihy, Sarah E; Tang, Yu; Phillips, Jonathan E; Gomer, Richard H

    2017-03-01

    Autocrine proliferation repressor protein A (AprA) is a protein secreted by Dictyostelium discoideum cells. Although there is very little sequence similarity between AprA and any human protein, AprA has a predicted structural similarity to the human protein dipeptidyl peptidase IV (DPPIV). AprA is a chemorepellent for Dictyostelium cells, and DPPIV is a chemorepellent for neutrophils. This led us to investigate if AprA and DPPIV have additional functional similarities. We find that like AprA, DPPIV is a chemorepellent for, and inhibits the proliferation of, D. discoideum cells, and that AprA binds some DPPIV binding partners such as fibronectin. Conversely, rAprA has DPPIV-like protease activity. These results indicate a functional similarity between two eukaryotic chemorepellent proteins with very little sequence similarity, and emphasize the usefulness of using a predicted protein structure to search a protein structure database, in addition to searching for proteins with similar sequences. © 2016 The Protein Society.

  8. Functional similarities between the dictyostelium protein AprA and the human protein dipeptidyl‐peptidase IV

    Science.gov (United States)

    Herlihy, Sarah E.; Tang, Yu; Phillips, Jonathan E.

    2017-01-01

    Abstract Autocrine proliferation repressor protein A (AprA) is a protein secreted by Dictyostelium discoideum cells. Although there is very little sequence similarity between AprA and any human protein, AprA has a predicted structural similarity to the human protein dipeptidyl peptidase IV (DPPIV). AprA is a chemorepellent for Dictyostelium cells, and DPPIV is a chemorepellent for neutrophils. This led us to investigate if AprA and DPPIV have additional functional similarities. We find that like AprA, DPPIV is a chemorepellent for, and inhibits the proliferation of, D. discoideum cells, and that AprA binds some DPPIV binding partners such as fibronectin. Conversely, rAprA has DPPIV‐like protease activity. These results indicate a functional similarity between two eukaryotic chemorepellent proteins with very little sequence similarity, and emphasize the usefulness of using a predicted protein structure to search a protein structure database, in addition to searching for proteins with similar sequences. PMID:28028841

  9. A LEGO paradigm for virtual accelerator concept

    International Nuclear Information System (INIS)

    Andrianov, S.; Ivanov, A.; Podzyvalov, E.

    2012-01-01

    The paper considers basic features of a Virtual Accelerator concept based on LEGO paradigm. This concept involves three types of components: different mathematical models for accelerator design problems, integrated beam simulation packages (i. e. COSY, MAD, OptiM and others), and a special class of virtual feedback instruments similar to real control systems (EPICS). All of these components should inter-operate for more complete analysis of control systems and increased fault tolerance. The Virtual Accelerator is an information and computing environment which provides a framework for analysis based on these components that can be combined in different ways. Corresponding distributed computing services establish interaction between mathematical models and low level control system. The general idea of the software implementation is based on the Service-Oriented Architecture (SOA) that allows using cloud computing technology and enables remote access to the information and computing resources. The Virtual Accelerator allows a designer to combine powerful instruments for modeling beam dynamics in a friendly way including both self-developed and well-known packages. In the scope of this concept the following is also proposed: the control system identification, analysis and result verification, visualization as well as virtual feedback for beam line operation. The architecture of the Virtual Accelerator system itself and results of beam dynamics studies are presented. (authors)

  10. Computer simulations of compact toroid formation and acceleration

    International Nuclear Information System (INIS)

    Peterkin, R.E. Jr.; Sovinec, C.R.

    1990-01-01

    Experiments to form, accelerate, and focus compact toroid plasmas will be performed on the 9.4 MJ SHIVA STAR fast capacitor bank at the Air Force Weapons Laboratory during the 1990. The MARAUDER (magnetically accelerated rings to achieve ultrahigh directed energy and radiation) program is a research effort to accelerate magnetized plasma rings with the masses between 0.1 and 1.0 mg to velocities above 10 8 cm/sec and energies above 1 MJ. Research on these high-velocity compact toroids may lead to development of very fast opening switches, high-power microwave sources, and an alternative path to inertial confinement fusion. Design of a compact toroid accelerator experiment on the SHIVA STAR capacitor bank is underway, and computer simulations with the 2 1/2-dimensional magnetohydrodynamics code, MACH2, have been performed to guide this endeavor. The compact toroids are produced in a magnetized coaxial plasma gun, and the acceleration will occur in a configuration similar to a coaxial railgun. Detailed calculations of formation and equilibration of a low beta magnetic force-free configuration (curl B = kB) have been performed with MACH2. In this paper, the authors discuss computer simulations of the focusing and acceleration of the toroid

  11. The CHASE laboratory search for chameleon dark energy

    International Nuclear Information System (INIS)

    Steffen, Jason H.

    2010-01-01

    A scalar field is a favorite candidate for the particle responsible for dark energy. However, few theoretical means exist that can simultaneously explain the observed acceleration of the Universe and evade tests of gravity. The chameleon mechanism, whereby the properties of a particle depend upon the local environment, is one possible avenue. We present the results of the Chameleon Afterglow Search (CHASE) experiment, a laboratory probe for chameleon dark energy. CHASE marks a significant improvement other searches for chameleons both in terms of its sensitivity to the photon/chameleon coupling as well as its sensitivity to the classes of chameleon dark energy models and standard power-law models. Since chameleon dark energy is virtually indistinguishable from a cosmological constant, CHASE tests dark energy models in a manner not accessible to astronomical surveys.

  12. The CHASE laboratory search for chameleon dark energy

    Energy Technology Data Exchange (ETDEWEB)

    Steffen, Jason [Fermi National Accelerator Laboratory - Fermilab, P.O. Box 500, Batavia, IL 60510-5011 (United States)

    2010-07-01

    A scalar field is a favorite candidate for the particle responsible for dark energy. However, few theoretical means exist that can simultaneously explain the observed acceleration of the Universe and evade tests of gravity. The chameleon mechanism, whereby the properties of a particle depend upon the local environment, is one possible avenue. I present the results of the Chameleon Afterglow Search (CHASE) experiment, a laboratory probe for chameleon dark energy. CHASE marks a significant improvement over other searches for chameleons both in terms of its sensitivity to the photon/chameleon coupling as well as its sensitivity to the classes of chameleon dark energy models and standard power-law models. Since chameleon dark energy is virtually indistinguishable from a cosmological constant, CHASE tests dark energy models in a manner not accessible to astronomical surveys. (author)

  13. Plasma accelerators

    International Nuclear Information System (INIS)

    Bingham, R.; Angelis, U. de; Johnston, T.W.

    1991-01-01

    Recently attention has focused on charged particle acceleration in a plasma by a fast, large amplitude, longitudinal electron plasma wave. The plasma beat wave and plasma wakefield accelerators are two efficient ways of producing ultra-high accelerating gradients. Starting with the plasma beat wave accelerator (PBWA) and laser wakefield accelerator (LWFA) schemes and the plasma wakefield accelerator (PWFA) steady progress has been made in theory, simulations and experiments. Computations are presented for the study of LWFA. (author)

  14. Compact toroid formation, compression, and acceleration

    International Nuclear Information System (INIS)

    Degnan, J.H.; Peterkin, R.E. Jr.; Baca, G.P.; Beason, J.D.; Bell, D.E.; Dearborn, M.E.; Dietz, D.; Douglas, M.R.; Englert, S.E.; Englert, T.J.; Hackett, K.E.; Holmes, J.H.; Hussey, T.W.; Kiuttu, G.F.; Lehr, F.M.; Marklin, G.J.; Mullins, B.W.; Price, D.W.; Roderick, N.F.; Ruden, E.L.; Sovinec, C.R.; Turchi, P.J.; Bird, G.; Coffey, S.K.; Seiler, S.W.; Chen, Y.G.; Gale, D.; Graham, J.D.; Scott, M.; Sommars, W.

    1993-01-01

    Research on forming, compressing, and accelerating milligram-range compact toroids using a meter diameter, two-stage, puffed gas, magnetic field embedded coaxial plasma gun is described. The compact toroids that are studied are similar to spheromaks, but they are threaded by an inner conductor. This research effort, named MARAUDER (Magnetically Accelerated Ring to Achieve Ultra-high Directed Energy and Radiation), is not a magnetic confinement fusion program like most spheromak efforts. Rather, the ultimate goal of the present program is to compress toroids to high mass density and magnetic field intensity, and to accelerate the toroids to high speed. There are a variety of applications for compressed, accelerated toroids including fast opening switches, x-radiation production, radio frequency (rf) compression, as well as charge-neutral ion beam and inertial confinement fusion studies. Experiments performed to date to form and accelerate toroids have been diagnosed with magnetic probe arrays, laser interferometry, time and space resolved optical spectroscopy, and fast photography. Parts of the experiment have been designed by, and experimental results are interpreted with, the help of two-dimensional (2-D), time-dependent magnetohydrodynamic (MHD) numerical simulations. When not driven by a second discharge, the toroids relax to a Woltjer--Taylor equilibrium state that compares favorably to the results of 2-D equilibrium calculations and to 2-D time-dependent MHD simulations. Current, voltage, and magnetic probe data from toroids that are driven by an acceleration discharge are compared to 2-D MHD and to circuit solver/slug model predictions. Results suggest that compact toroids are formed in 7--15 μsec, and can be accelerated intact with material species the same as injected gas species and entrained mass ≥1/2 the injected mass

  15. OrChem - An open source chemistry search engine for Oracle®

    Science.gov (United States)

    2009-01-01

    Background Registration, indexing and searching of chemical structures in relational databases is one of the core areas of cheminformatics. However, little detail has been published on the inner workings of search engines and their development has been mostly closed-source. We decided to develop an open source chemistry extension for Oracle, the de facto database platform in the commercial world. Results Here we present OrChem, an extension for the Oracle 11G database that adds registration and indexing of chemical structures to support fast substructure and similarity searching. The cheminformatics functionality is provided by the Chemistry Development Kit. OrChem provides similarity searching with response times in the order of seconds for databases with millions of compounds, depending on a given similarity cut-off. For substructure searching, it can make use of multiple processor cores on today's powerful database servers to provide fast response times in equally large data sets. Availability OrChem is free software and can be redistributed and/or modified under the terms of the GNU Lesser General Public License as published by the Free Software Foundation. All software is available via http://orchem.sourceforge.net. PMID:20298521

  16. OrChem - An open source chemistry search engine for Oracle(R).

    Science.gov (United States)

    Rijnbeek, Mark; Steinbeck, Christoph

    2009-10-22

    Registration, indexing and searching of chemical structures in relational databases is one of the core areas of cheminformatics. However, little detail has been published on the inner workings of search engines and their development has been mostly closed-source. We decided to develop an open source chemistry extension for Oracle, the de facto database platform in the commercial world. Here we present OrChem, an extension for the Oracle 11G database that adds registration and indexing of chemical structures to support fast substructure and similarity searching. The cheminformatics functionality is provided by the Chemistry Development Kit. OrChem provides similarity searching with response times in the order of seconds for databases with millions of compounds, depending on a given similarity cut-off. For substructure searching, it can make use of multiple processor cores on today's powerful database servers to provide fast response times in equally large data sets. OrChem is free software and can be redistributed and/or modified under the terms of the GNU Lesser General Public License as published by the Free Software Foundation. All software is available via http://orchem.sourceforge.net.

  17. Shape representation modulating the effect of motion on visual search performance.

    Science.gov (United States)

    Yang, Lindong; Yu, Ruifeng; Lin, Xuelian; Liu, Na

    2017-11-02

    The effect of motion on visual search has been extensively investigated, but that of uniform linear motion of display on search performance for tasks with different target-distractor shape representations has been rarely explored. The present study conducted three visual search experiments. In Experiments 1 and 2, participants finished two search tasks that differed in target-distractor shape representations under static and dynamic conditions. Two tasks with clear and blurred stimuli were performed in Experiment 3. The experiments revealed that target-distractor shape representation modulated the effect of motion on visual search performance. For tasks with low target-distractor shape similarity, motion negatively affected search performance, which was consistent with previous studies. However, for tasks with high target-distractor shape similarity, if the target differed from distractors in that a gap with a linear contour was added to the target, and the corresponding part of distractors had a curved contour, motion positively influenced search performance. Motion blur contributed to the performance enhancement under dynamic conditions. The findings are useful for understanding the influence of target-distractor shape representation on dynamic visual search performance when display had uniform linear motion.

  18. Permission-based Index Clustering for Secure Multi-User Search

    OpenAIRE

    Eirini C. Micheli; Giorgos Margaritis; Stergios V. Anastasiadis

    2015-01-01

    Secure keyword search in shared infrastructures prevents stored documents from leaking sensitive information to unauthorized users. A shared index provides confidentiality if it is exclusively used by users authorized to search all the indexed documents. We introduce the Lethe indexing workflow to improve query and update efficiency in secure keyword search. The Lethe workflow clusters together documents with similar sets of authorized users, and creates shared indices for configurable docume...

  19. When Gravity Fails: Local Search Topology

    Science.gov (United States)

    Frank, Jeremy; Cheeseman, Peter; Stutz, John; Lau, Sonie (Technical Monitor)

    1997-01-01

    Local search algorithms for combinatorial search problems frequently encounter a sequence of states in which it is impossible to improve the value of the objective function; moves through these regions, called {\\em plateau moves), dominate the time spent in local search. We analyze and characterize {\\em plateaus) for three different classes of randomly generated Boolean Satisfiability problems. We identify several interesting features of plateaus that impact the performance of local search algorithms. We show that local minima tend to be small but occasionally may be very large. We also show that local minima can be escaped without unsatisfying a large number of clauses, but that systematically searching for an escape route may be computationally expensive if the local minimum is large. We show that plateaus with exits, called benches, tend to be much larger than minima, and that some benches have very few exit states which local search can use to escape. We show that the solutions (i.e. global minima) of randomly generated problem instances form clusters, which behave similarly to local minima. We revisit several enhancements of local search algorithms and explain their performance in light of our results. Finally we discuss strategies for creating the next generation of local search algorithms.

  20. Predicting user click behaviour in search engine advertisements

    Science.gov (United States)

    Daryaie Zanjani, Mohammad; Khadivi, Shahram

    2015-10-01

    According to the specific requirements and interests of users, search engines select and display advertisements that match user needs and have higher probability of attracting users' attention based on their previous search history. New objects such as user, advertisement or query cause a deterioration of precision in targeted advertising due to their lack of history. This article surveys this challenge. In the case of new objects, we first extract similar observed objects to the new object and then we use their history as the history of new object. Similarity between objects is measured based on correlation, which is a relation between user and advertisement when the advertisement is displayed to the user. This method is used for all objects, so it has helped us to accurately select relevant advertisements for users' queries. In our proposed model, we assume that similar users behave in a similar manner. We find that users with few queries are similar to new users. We will show that correlation between users and advertisements' keywords is high. Thus, users who pay attention to advertisements' keywords, click similar advertisements. In addition, users who pay attention to specific brand names might have similar behaviours too.

  1. Patient-Centered Tools for Medication Information Search.

    Science.gov (United States)

    Wilcox, Lauren; Feiner, Steven; Elhadad, Noémie; Vawdrey, David; Tran, Tran H

    2014-05-20

    Recent research focused on online health information seeking highlights a heavy reliance on general-purpose search engines. However, current general-purpose search interfaces do not necessarily provide adequate support for non-experts in identifying suitable sources of health information. Popular search engines have recently introduced search tools in their user interfaces for a range of topics. In this work, we explore how such tools can support non-expert, patient-centered health information search. Scoping the current work to medication-related search, we report on findings from a formative study focused on the design of patient-centered, medication-information search tools. Our study included qualitative interviews with patients, family members, and domain experts, as well as observations of their use of Remedy, a technology probe embodying a set of search tools. Post-operative cardiothoracic surgery patients and their visiting family members used the tools to find information about their hospital medications and were interviewed before and after their use. Domain experts conducted similar search tasks and provided qualitative feedback on their preferences and recommendations for designing these tools. Findings from our study suggest the importance of four valuation principles underlying our tools: credibility, readability, consumer perspective, and topical relevance.

  2. Quasar 3C351: VLA maps and a deep search for optical emission in the outer lobes

    International Nuclear Information System (INIS)

    Kronberg, P.P.; Clarke, J.N.; van den Bergh, S.

    1980-01-01

    VLA radio maps of the quasar 3C351 (z=0.371) at approx.2'' and 0.''4 resolution (a) show interaction with a relatively dense intergalactic medium, (b) show that there is electron acceleration within at least one of the radio lobes, and (c) imply that the intergalactic gas density is different on one side of the source than on the other. Striking similarities are found between the northern radio lobe of 3C351 and one of the outer hotspots of Cygnus A, and possibly other similar systems, in that the outer, on-axis hotspot is resolved and cusp-shaped, and the ''secondary'' off-axis hotspot is more compact. A search for optical emission in the outer lobes shows no emission stronger than 22/sup m/ in the J band and approx.21/sup m/ in the F band. There is also no evidence at these limits for a cluster of galaxies near the radio source, as is suggested by our conclusion that it is interacting with a medium of typical intracluster density

  3. Relativistically Induced Transparency Acceleration (RITA) - laser-plasma accelerated quasi-monoenergetic GeV ion-beams with existing lasers?

    Science.gov (United States)

    Sahai, Aakash A.

    2013-10-01

    Laser-plasma ion accelerators have the potential to produce beams with unprecedented characteristics of ultra-short bunch lengths (100s of fs) and high bunch-charge (1010 particles) over acceleration length of about 100 microns. However, creating and controlling mono-energetic bunches while accelerating to high-energies has been a challenge. If high-energy mono-energetic beams can be demonstrated with minimal post-processing, laser (ω0)-plasma (ωpe) ion accelerators may be used in a wide-range of applications such as cancer hadron-therapy, medical isotope production, neutron generation, radiography and high-energy density science. Here we demonstrate using analysis and simulations that using relativistic intensity laser-pulses and heavy-ion (Mi ×me) targets doped with a proton (or light-ion) species (mp ×me) of trace density (at least an order of magnitude below the cold critical density) we can scale up the energy of quasi-mono-energetically accelerated proton (or light-ion) beams while controlling their energy, charge and energy spectrum. This is achieved by controlling the laser propagation into an overdense (ω0 RITA). Desired proton or light-ion energies can be achieved by controlling the velocity of the snowplow, which is shown to scale inversely with the rise-time of the laser (higher energies for shorter pulses) and directly with the scale-length of the plasma density gradient. Similar acceleration can be produced by controlling the increase of the laser frequency (Chirp Induced Transparency Acceleration, ChITA). Work supported by the National Science Foundation under NSF- PHY-0936278. Also, NSF-PHY-0936266 and NSF-PHY-0903039; the US Department of Energy under DEFC02-07ER41500, DE- FG02-92ER40727 and DE-FG52-09NA29552.

  4. An algorithm for online optimization of accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Huang, Xiaobiao [SLAC National Accelerator Lab., Menlo Park, CA (United States); Corbett, Jeff [SLAC National Accelerator Lab., Menlo Park, CA (United States); Safranek, James [SLAC National Accelerator Lab., Menlo Park, CA (United States); Wu, Juhao [SLAC National Accelerator Lab., Menlo Park, CA (United States)

    2013-10-01

    We developed a general algorithm for online optimization of accelerator performance, i.e., online tuning, using the performance measure as the objective function. This method, named robust conjugate direction search (RCDS), combines the conjugate direction set approach of Powell's method with a robust line optimizer which considers the random noise in bracketing the minimum and uses parabolic fit of data points that uniformly sample the bracketed zone. Moreover, it is much more robust against noise than traditional algorithms and is therefore suitable for online application. Simulation and experimental studies have been carried out to demonstrate the strength of the new algorithm.

  5. First muon acceleration using a radio-frequency accelerator

    Directory of Open Access Journals (Sweden)

    S. Bae

    2018-05-01

    Full Text Available Muons have been accelerated by using a radio-frequency accelerator for the first time. Negative muonium atoms (Mu^{-}, which are bound states of positive muons (μ^{+} and two electrons, are generated from μ^{+}’s through the electron capture process in an aluminum degrader. The generated Mu^{-}’s are initially electrostatically accelerated and injected into a radio-frequency quadrupole linac (RFQ. In the RFQ, the Mu^{-}’s are accelerated to 89 keV. The accelerated Mu^{-}’s are identified by momentum measurement and time of flight. This compact muon linac opens the door to various muon accelerator applications including particle physics measurements and the construction of a transmission muon microscope.

  6. Acceleration Modes and Transitions in Pulsed Plasma Accelerators

    Science.gov (United States)

    Polzin, Kurt A.; Greve, Christine M.

    2018-01-01

    Pulsed plasma accelerators typically operate by storing energy in a capacitor bank and then discharging this energy through a gas, ionizing and accelerating it through the Lorentz body force. Two plasma accelerator types employing this general scheme have typically been studied: the gas-fed pulsed plasma thruster and the quasi-steady magnetoplasmadynamic (MPD) accelerator. The gas-fed pulsed plasma accelerator is generally represented as a completely transient device discharging in approximately 1-10 microseconds. When the capacitor bank is discharged through the gas, a current sheet forms at the breech of the thruster and propagates forward under a j (current density) by B (magnetic field) body force, entraining propellant it encounters. This process is sometimes referred to as detonation-mode acceleration because the current sheet representation approximates that of a strong shock propagating through the gas. Acceleration of the initial current sheet ceases when either the current sheet reaches the end of the device and is ejected or when the current in the circuit reverses, striking a new current sheet at the breech and depriving the initial sheet of additional acceleration. In the quasi-steady MPD accelerator, the pulse is lengthened to approximately 1 millisecond or longer and maintained at an approximately constant level during discharge. The time over which the transient phenomena experienced during startup typically occur is short relative to the overall discharge time, which is now long enough for the plasma to assume a relatively steady-state configuration. The ionized gas flows through a stationary current channel in a manner that is sometimes referred to as the deflagration-mode of operation. The plasma experiences electromagnetic acceleration as it flows through the current channel towards the exit of the device. A device that had a short pulse length but appeared to operate in a plasma acceleration regime different from the gas-fed pulsed plasma

  7. POSTER: Privacy-Preserving Profile Similarity Computation in Online Social Networks

    NARCIS (Netherlands)

    Jeckmans, Arjan; Tang, Qiang; Hartel, Pieter H.

    2011-01-01

    Currently, none of the existing online social networks (OSNs) enables its users to make new friends without revealing their private information. This leaves the users in a vulnerable position when searching for new friends. We propose a solution which enables a user to compute her profile similarity

  8. Hybrid rail gun electromagnetic accelerators

    International Nuclear Information System (INIS)

    Chen, K.W.; Hachen, H.; Lee, A.; Legh, G.; Lin, T.; Mattay, S.; Wipf, S.

    1983-01-01

    Theoretical and experimental investigations on hybrid rail accelerators are presented. It is shown that the side surface areas and in some cases sabots of the projectile can be used to provide substantial amount of additional thrust. Moreover, it is shown that in most cases examined, external magnetic fields can be conveniently incorporated in the accelerator designs to supplement the rail-induced fields. Total thrusts in excess of 10 MN for kilogram-sized projectiles can in principle be established with driving currents of the order of 1 MA. No obvious stress limitations are foreseen. The percentages of thrust from external magnetic fields are sufficiently high that the use of which should be encouraged. The increased flexibility in the projectile shapes available permits the use of the proposed hybrid electromagnetic launcher technology in a variety of new areas, such as thrust boosts in conventional chemical rockets and other similar applications. Furthermore, the additional thrust obtained from the use of side surface areas greatly increases the maximum permissable thrust otherwise limited by material strength considerations. Thrust analyses for projectiles in several hybrid rail accelerator designs are discussed. Some laboratory experimental observations are presented

  9. A survey on visual information search behavior and requirements of radiologists.

    Science.gov (United States)

    Markonis, D; Holzer, M; Dungs, S; Vargas, A; Langs, G; Kriewel, S; Müller, H

    2012-01-01

    The main objective of this study is to learn more on the image use and search requirements of radiologists. These requirements will then be taken into account to develop a new search system for images and associated meta data search in the Khresmoi project. Observations of the radiology workflow, case discussions and a literature review were performed to construct a survey form that was given online and in paper form to radiologists. Eye tracking was performed on a radiology viewing station to analyze typical tasks and to complement the survey. In total 34 radiologists answered the survey online or on paper. Image search was mentioned as a frequent and common task, particularly for finding cases of interest for differential diagnosis. Sources of information besides the Internet are books and discussions with colleagues. Search for images is unsuccessful in around 25% of the cases, stopping the search after around 10 minutes. The most common reason for failure is that target images are considered rare. Important additions for search requested in the survey are filtering by pathology and modality, as well as search for visually similar images and cases. Few radiologists are familiar with visual retrieval but they desire the option to upload images for searching similar ones. Image search is common in radiology but few radiologists are fully aware of visual information retrieval. Taking into account the many unsuccessful searches and time spent for this, a good image search could improve the situation and help in clinical practice.

  10. Search for Hidden Particles (SHiP): a new experiment proposal

    Science.gov (United States)

    De Lellis, G.

    2015-06-01

    Searches for new physics with accelerators are being performed at the LHC, looking for high massive particles coupled to matter with ordinary strength. We propose a new experimental facility meant to search for very weakly coupled particles in the few GeV mass domain. The existence of such particles, foreseen in different theoretical models beyond the Standard Model, is largely unexplored from the experimental point of view. A beam dump facility, built at CERN in the north area, using 400 GeV protons is a copious factory of charmed hadrons and could be used to probe the existence of such particles. The beam dump is also an ideal source of tau neutrinos, the less known particle in the Standard Model. In particular, tau anti-neutrinos have not been observed so far. We therefore propose an experiment to search for hidden particles and study tau neutrino physics at the same time.

  11. Search for Lepton Flavor Violation with Muons

    International Nuclear Information System (INIS)

    Kuno, Yoshitaka

    2009-01-01

    Physics motivation and phenomenology of muon to electron conversion (μ - +N(A,Z)→e - +N(A,Z)) in a muonic atom, which is one the most important muon processes to search for lepton flavor violation of charged leptons, are presented. Prospects for future experiments at J-PARC (Japan Proton Accelerator Complex) in Japan, such as the COMET experiment for a sensitivity of less than 10 -16 as the first stage, and then the PRISM/PRIME experiment for a sensitivity of less than 10 -18 as the ultimate stage, are discussed.

  12. A search for sterile neutrinos in MINOS

    Energy Technology Data Exchange (ETDEWEB)

    Osiecki, Thomas Henry [Univ. of Texas, Austin, TX (United States)

    2007-01-01

    MINOS, the Main Injector Neutrino Oscillation Search, is a long baseline neutrino oscillation experiment based at Fermilab National Accelerator Laboratory. The experiment uses a neutrino beam, which is measured 1 km downstream from its origin in the Near detector at Fermilab and then 735 km later in the Far detector at the Soudan mine. By comparing these two measurements, MINOS can attain a very high precision for parameters in the atmospheric sector of neutrino oscillations. In addition to precisely determining Δm$2\\atop{23}$ and θ23 through the disappearance of vμ, MINOS is able to measure vμ → vsterile by looking for a deficit in the number of neutral current interactions seen in the Far detector. In this thesis, we present the results of a search for sterile neutrinos in MINOS.

  13. WIMP dark matter and supersymmetry searches with neutrino telescopes

    International Nuclear Information System (INIS)

    Fornengo, N.

    2011-01-01

    The particle physics interpretation of the missing-mass, or dark-matter, a problem of cosmological and astrophysical nature, is going to be placed under strong scrutiny in the next years. From the particle physics side, accelerator physics will deeply test theoretical ideas about new physics beyond the Standard Model, where a particle physics candidate to dark matter is often naturally obtained. From the astrophysical side, many probes are already providing a great deal of independent information on signals which can be produced by the galactic or extra-galactic dark matter. The current and new-generation experimental efforts are therefore going to place under deep scrutiny the theoretical explanations of the relevant signals. The ultimate hope is in fact to be able to disentangle a dark matter signal from the various sources of backgrounds. Neutrino telescopes are one of the prominent tools for looking at dark matter and search for a signal, the neutrino flux from Earth and Sun. In this neutrino dark matter searches share properties with both direct dark matter searches and cosmic-ray indirect dark matter searches, and therefore complement these different detection techniques.

  14. Accelerated subcutaneous immunotherapy in pediatric population – Systematic review

    Directory of Open Access Journals (Sweden)

    R.A. Gomes dos Reis Pimentel

    2018-05-01

    Full Text Available Background: Accelerated subcutaneous immunotherapy (SCIT schedules represent an alternative to conventional SCIT, providing immunotherapy benefits in a shorter period of time. The objectives of this systematic review were to assess clinical and immunological efficacy as well as safety of accelerated SCIT build-up schedules for the treatment of respiratory allergy in pediatric patients. Methods: Studies were located by searching PubMed, using “immunotherapy” and “desensitization” as keywords. The selection of studies, published from January 1st, 2006, to December 31th, 2015, was performed in two stages: screening of titles and abstracts, and assessment of the full papers identified as relevant, considering the inclusion criteria. Data were extracted in a standardized way and synthesized qualitatively to assess efficacy and safety of accelerated schedules in respiratory allergy. Results: Eleven trials were included: two evaluated rush SCIT and nine assessed cluster SCIT. This review demonstrated that rush and cluster schedules are clinically and immunological efficacious, with faster effect than conventional schedules. No relevant difference with respect to clinical outcomes was noticed between subgroups (pediatric, adult and mixed populations. Regarding safety, most local adverse reactions were mild and there were neither life-threatening systemic reactions nor fatal events. No relevant differences in the incidence and severity of either local or systemic reactions between the accelerated schedule group and control group were registered. Conclusions: Accelerated SCIT build-up schedules are effective in the treatment of respiratory allergy in pediatric patients, representing a safe alternative to the conventional schedules with the advantage of achieving clinical effectiveness sooner. Keywords: Allergy, Immunotherapy, Pediatrics

  15. Accelerator Technology: Geodesy and Alignment for Particle Accelerators

    CERN Document Server

    Missiaen, D

    2013-01-01

    This document is part of Subvolume C 'Accelerators and Colliders' of Volume 21 'Elementary Particles' of Landolt-Börnstein - Group I 'Elementary Particles, Nuclei and Atoms'. It contains the the Section '8.9 Geodesy and Alignment for Particle Accelerators' of the Chapter '8 Accelerator Technology' with the content: 8.9 Geodesy and Alignment for Particle Accelerators 8.9.1 Introduction 8.9.2 Reference and Co-ordinate Systems 8.9.3 Definition of the Beam Line on the Accelerator Site 8.9.4 Geodetic Network 8.9.5 Tunnel Preliminary Works 8.9.6 The Alignment References 8.9.7 Alignment of Accelerator Components 8.9.8 Permanent Monitoring and Remote Alignment of Low Beta Quadrupoles 8.9.9 Alignment of Detector Components

  16. Scaling, Similarity, and the Fourth Paradigm for Hydrology

    Science.gov (United States)

    Peters-Lidard, Christa D.; Clark, Martyn; Samaniego, Luis; Verhoest, Niko E. C.; van Emmerik, Tim; Uijlenhoet, Remko; Achieng, Kevin; Franz, Trenton E.; Woods, Ross

    2017-01-01

    In this synthesis paper addressing hydrologic scaling and similarity, we posit that roadblocks in the search for universal laws of hydrology are hindered by our focus on computational simulation (the third paradigm), and assert that it is time for hydrology to embrace a fourth paradigm of data-intensive science. Advances in information-based hydrologic science, coupled with an explosion of hydrologic data and advances in parameter estimation and modelling, have laid the foundation for a data-driven framework for scrutinizing hydrological scaling and similarity hypotheses. We summarize important scaling and similarity concepts (hypotheses) that require testing, describe a mutual information framework for testing these hypotheses, describe boundary condition, state flux, and parameter data requirements across scales to support testing these hypotheses, and discuss some challenges to overcome while pursuing the fourth hydrological paradigm. We call upon the hydrologic sciences community to develop a focused effort towards adopting the fourth paradigm and apply this to outstanding challenges in scaling and similarity.

  17. Department of Accelerator Physics and Technology: Overview

    International Nuclear Information System (INIS)

    Plawski, E.

    2003-01-01

    model resonators for a new type of 2 x 9 cell accelerating superstructures was successfully designed, built and sent to DESY for further tests. In DESY, the long term tests of the first type 4 x 7-cell superconducting superstructure (part of which was made in our Department in 1999) ended with very good results. The works on RF vacuum windows protection against the multipactor effects in high power couplers are still continued in DESY. The new technologies of thin TiN coating of ceramic windows were tested and a new coating setup was designed. The results were presented on the Workshop on High-Power Couplers for Superconducting Accelerators held Oct. 2002. The experience of Department's performance in last year evokes important conclusions: - we are always able to undertake new important tasks in accelerator physics and technology, and collaborate with eminent accelerator laboratories, - there exists a real necessity to keep and develop accelerator physics in our Institute. Searching for new ways in difficult financial conditions, the Department should be stepwise reconstructed and developed. (author)

  18. Evolution and development of the Oak Ridge 25URC tandem accelerator control system

    International Nuclear Information System (INIS)

    Juras, R.C.; Ziegler, N.F.; Meigs, M.J.; McPherson, R.L.; Hoglund, D.E.; Biggerstaff, J.A.

    1987-01-01

    Since acceptance of the 25URC accelerator in 1982, we have continued to develop and improve both the accelerator control system and associated software. In this paper, we describe these improvements and also discuss how our experience with the present system would influence the architecture and design of future, similar systems

  19. SA-Search: a web tool for protein structure mining based on a Structural Alphabet.

    Science.gov (United States)

    Guyon, Frédéric; Camproux, Anne-Claude; Hochez, Joëlle; Tufféry, Pierre

    2004-07-01

    SA-Search is a web tool that can be used to mine for protein structures and extract structural similarities. It is based on a hidden Markov model derived Structural Alphabet (SA) that allows the compression of three-dimensional (3D) protein conformations into a one-dimensional (1D) representation using a limited number of prototype conformations. Using such a representation, classical methods developed for amino acid sequences can be employed. Currently, SA-Search permits the performance of fast 3D similarity searches such as the extraction of exact words using a suffix tree approach, and the search for fuzzy words viewed as a simple 1D sequence alignment problem. SA-Search is available at http://bioserv.rpbs.jussieu.fr/cgi-bin/SA-Search.

  20. Gesture Recognition from Data Streams of Human Motion Sensor Using Accelerated PSO Swarm Search Feature Selection Algorithm

    Directory of Open Access Journals (Sweden)

    Simon Fong

    2015-01-01

    Full Text Available Human motion sensing technology gains tremendous popularity nowadays with practical applications such as video surveillance for security, hand signing, and smart-home and gaming. These applications capture human motions in real-time from video sensors, the data patterns are nonstationary and ever changing. While the hardware technology of such motion sensing devices as well as their data collection process become relatively mature, the computational challenge lies in the real-time analysis of these live feeds. In this paper we argue that traditional data mining methods run short of accurately analyzing the human activity patterns from the sensor data stream. The shortcoming is due to the algorithmic design which is not adaptive to the dynamic changes in the dynamic gesture motions. The successor of these algorithms which is known as data stream mining is evaluated versus traditional data mining, through a case of gesture recognition over motion data by using Microsoft Kinect sensors. Three different subjects were asked to read three comic strips and to tell the stories in front of the sensor. The data stream contains coordinates of articulation points and various positions of the parts of the human body corresponding to the actions that the user performs. In particular, a novel technique of feature selection using swarm search and accelerated PSO is proposed for enabling fast preprocessing for inducing an improved classification model in real-time. Superior result is shown in the experiment that runs on this empirical data stream. The contribution of this paper is on a comparative study between using traditional and data stream mining algorithms and incorporation of the novel improved feature selection technique with a scenario where different gesture patterns are to be recognized from streaming sensor data.

  1. Database automation of accelerator operation

    International Nuclear Information System (INIS)

    Casstevens, B.J.; Ludemann, C.A.

    1982-01-01

    The Oak Ridge Isochronous Cyclotron (ORIC) is a variable energy, multiparticle accelerator that produces beams of energetic heavy ions which are used as probes to study the structure of the atomic nucleus. To accelerate and transmit a particular ion at a specified energy to an experimenter's apparatus, the electrical currents in up to 82 magnetic field producing coils must be established to accuracies of from 0.1 to 0.001 percent. Mechanical elements must also be positioned by means of motors or pneumatic drives. A mathematical model of this complex system provides a good approximation of operating parameters required to produce an ion beam. However, manual tuning of the system must be performed to optimize the beam quality. The database system was implemented as an on-line query and retrieval system running at a priority lower than the cyclotron real-time software. It was designed for matching beams recorded in the database with beams specified for experiments. The database is relational and permits searching on ranges of any subset of the eleven beam categorizing attributes. A beam file selected from the database is transmitted to the cyclotron general control software which handles the automatic slewing of power supply currents and motor positions to the file values, thereby replicating the desired parameters

  2. THE USE OF DISPERSION STRENGTHENED COPPER IN ACCELERATOR DESIGNS

    International Nuclear Information System (INIS)

    VALDIVIEZ, R.; SCHRAGE, D.

    2000-01-01

    Dispersion strengthened copper, known by the trade name GLIDCOP(reg sign), has found various applications in accelerator designs. Glidcop has material properties similar to OFE copper, such as thermal and electrical conductivity. Unlike OFE, however, Glidcop has yield and ultimate strengths equivalent to those of mild-carbon steel, making it a good structural material. This paper covers some accelerator components fabricated with Glidcop, material properties measured from room to brazing temperatures, and a furnace-brazing process that has produced good, consistent results with Glidcop

  3. Object recognition based on Google's reverse image search and image similarity

    Science.gov (United States)

    Horváth, András.

    2015-12-01

    Image classification is one of the most challenging tasks in computer vision and a general multiclass classifier could solve many different tasks in image processing. Classification is usually done by shallow learning for predefined objects, which is a difficult task and very different from human vision, which is based on continuous learning of object classes and one requires years to learn a large taxonomy of objects which are not disjunct nor independent. In this paper I present a system based on Google image similarity algorithm and Google image database, which can classify a large set of different objects in a human like manner, identifying related classes and taxonomies.

  4. 2014 CERN Accelerator Schools: Plasma Wake Acceleration

    CERN Multimedia

    2014-01-01

    A specialised school on Plasma Wake Acceleration will be held at CERN, Switzerland from 23-29 November, 2014.   This course will be of interest to staff and students in accelerator laboratories, university departments and companies working in or having an interest in the field of new acceleration techniques. Following introductory lectures on plasma and laser physics, the course will cover the different components of a plasma wake accelerator and plasma beam systems. An overview of the experimental studies, diagnostic tools and state of the art wake acceleration facilities, both present and planned, will complement the theoretical part. Topical seminars and a visit of CERN will complete the programme. Further information can be found at: http://cas.web.cern.ch/cas/PlasmaWake2014/CERN-advert.html http://indico.cern.ch/event/285444/

  5. Radiation safety and radiation protection problems on the TESLA Accelerator Installation

    International Nuclear Information System (INIS)

    Pavlovic, R.; Pavlovic, S.; Orlic, M.

    1997-01-01

    As we can see from the examples of many accelerator facilities installed throughout the world with ion beam energy, mass and charge characteristics and design similar to the TESLA Accelerator Installation, there is a great diversity among them, and each radiation protection and safety programme must be designed to facilitate the safe and effective operation of the accelerator according to the needs of the operating installation. Although there is no standard radiation protection and safety organization suitable for all institutions, experience suggests some general principles that should be integrated with all the disciplines involved in a comprehensive safety programme. (author)

  6. Stuxnet and the impact on accelerator control systems

    International Nuclear Information System (INIS)

    Lueders, S.

    2012-01-01

    2010 has seen wide news coverage of a new kind of computer attack, named 'Stuxnet', targeting control systems. Due to its level of sophistication, it is widely acknowledged that this attack marks the very first case of a cyber-war of one country against the industrial infrastructure of another, although there is still much speculation about the details. Worse yet, experts recognize that Stuxnet might just be the beginning and that similar attacks, eventually with much less sophistication, but with much more collateral damage, can be expected in the years to come. Stuxnet was targeting a special model of the Siemens 400 PLC series. Similar modules are also deployed for accelerator controls like the LHC cryogenics or vacuum systems as well as the detector control systems in LHC experiments. Therefore, the aim of this presentation is to give an insight into what this new attack does and why it is deemed to be special. In particular, the potential impact on accelerator and experiment control systems will be discussed, and means will be presented on how to properly protect against similar attacks. Deploying a 'Defense-in-depth' approach appears to be mandatory. (author)

  7. Virtual Accelerator for Accelerator Optics Improvement

    CERN Document Server

    Yan Yi Ton; Decker, Franz Josef; Ecklund, Stanley; Irwin, John; Seeman, John; Sullivan, Michael K; Turner, J L; Wienands, Ulrich

    2005-01-01

    Through determination of all quadrupole strengths and sextupole feed-downs by fitting quantities derivable from precision orbit measurement, one can establish a virtual accelerator that matches the real accelerator optics. These quantities (the phase advances, the Green's functions, and the coupling eigen-plane ellipses tilt angles and axis ratios) are obtained by analyzing turn-by-turn Beam Position Monitor (BPM) data with a model-independent analysis (MIA). Instead of trying to identify magnet errors, a limited number of quadrupoles are chosen for optimized strength adjustment to improve the virtual accelerator optics and then applied to the real accelerator accordingly. These processes have been successfully applied to PEP-II rings for beta beating fixes, phase and working tune adjustments, and linear coupling reduction to improve PEP-II luminosity.

  8. Interactive searching of facial image databases

    Science.gov (United States)

    Nicholls, Robert A.; Shepherd, John W.; Shepherd, Jean

    1995-09-01

    A set of psychological facial descriptors has been devised to enable computerized searching of criminal photograph albums. The descriptors have been used to encode image databased of up to twelve thousand images. Using a system called FACES, the databases are searched by translating a witness' verbal description into corresponding facial descriptors. Trials of FACES have shown that this coding scheme is more productive and efficient than searching traditional photograph albums. An alternative method of searching the encoded database using a genetic algorithm is currenly being tested. The genetic search method does not require the witness to verbalize a description of the target but merely to indicate a degree of similarity between the target and a limited selection of images from the database. The major drawback of FACES is that is requires a manual encoding of images. Research is being undertaken to automate the process, however, it will require an algorithm which can predict human descriptive values. Alternatives to human derived coding schemes exist using statistical classifications of images. Since databases encoded using statistical classifiers do not have an obvious direct mapping to human derived descriptors, a search method which does not require the entry of human descriptors is required. A genetic search algorithm is being tested for such a purpose.

  9. Airy Wave Packets Accelerating in Space-Time

    Science.gov (United States)

    Kondakci, H. Esat; Abouraddy, Ayman F.

    2018-04-01

    Although diffractive spreading is an unavoidable feature of all wave phenomena, certain waveforms can attain propagation invariance. A lesser-explored strategy for achieving optical self-similar propagation exploits the modification of the spatiotemporal field structure when observed in reference frames moving at relativistic speeds. For such an observer, it is predicted that the associated Lorentz boost can bring to a halt the axial dynamics of a wave packet of an arbitrary profile. This phenomenon is particularly striking in the case of a self-accelerating beam—such as an Airy beam—whose peak normally undergoes a transverse displacement upon free propagation. Here we synthesize an acceleration-free Airy wave packet that travels in a straight line by deforming its spatiotemporal spectrum to reproduce the impact of a Lorentz boost. The roles of the axial spatial coordinate and time are swapped, leading to "time diffraction" manifested in self-acceleration observed in the propagating Airy wave-packet frame.

  10. Solving Large Clustering Problems with Meta-Heuristic Search

    DEFF Research Database (Denmark)

    Turkensteen, Marcel; Andersen, Kim Allan; Bang-Jensen, Jørgen

    In Clustering Problems, groups of similar subjects are to be retrieved from data sets. In this paper, Clustering Problems with the frequently used Minimum Sum-of-Squares Criterion are solved using meta-heuristic search. Tabu search has proved to be a successful methodology for solving optimization...... problems, but applications to large clustering problems are rare. The simulated annealing heuristic has mainly been applied to relatively small instances. In this paper, we implement tabu search and simulated annealing approaches and compare them to the commonly used k-means approach. We find that the meta-heuristic...

  11. Report of the 1997 LEP2 working group on 'searches'

    International Nuclear Information System (INIS)

    Allanach, B.C.; Blair, G.A.; Diaz, M.A.

    1997-08-01

    A number of research program reports are presented from the LEP2 positron-electron collider in the area of searches for Higgs bosons, supersymmetry and supergravity. Working groups' reports cover prospective sensitivity of Higgs boson searches, radiative corrections to chargino production, charge and colour breaking minima in minimal Supersymmetric Standard Model, R-party violation effects upon unification predictions, searches for new pair-produced particles, single sneutrino production and searches related to effects similar to HERA experiments. The final section of the report summarizes the LEP 2 searches, concentrating on gians from running at 200 GeV and alternative paradigms for supersymmetric phenomenology. (UK)

  12. Role of accelerator-driven systems in waste incineration scenarios

    Energy Technology Data Exchange (ETDEWEB)

    Salvatores, M.; Slessarev, I.; Tchistiakov, A. [CEA Centre d`Etudes de Cadarache, 13 - Saint-Paul-lez-Durance (France). Direction des Reacteurs Nucleaires; Spiro, M.; Terrien, Y.; Mouney, H.; Vergnes, J.

    1997-12-31

    At CEA accelerator-driven systems (ADS) are studied in the frame of the R and D required to answer the request of a law voted in 1991 by the French Parliament, `to search for solutions allowing to partition and transmute long lived radioactive wastes, in order to reduce their volume and toxicity`. These systems (called `INCAs`) are still at a conceptual level. However, the role of ADS has been clarified as a first step, and this will be the subject of the present paper. (author)

  13. Photon damping in cosmic-ray acceleration in active galactic nuclei

    International Nuclear Information System (INIS)

    Colgate, S.A.

    1983-01-01

    The usual assumption of the acceleration of ultra high energy cosmic rays, greater than or equal to 10 18 eV in quasars, Seyfert galaxies and other active galactic nuclei is challenged on the basis of the photon interactions with the accelerated nucleons. This is similar to the effect of the black body radiation on particles > 10 20 eV for times of the age of the universe except that the photon spectrum is harder and the energy density greater by approx. = 10 15 . Hence, a single traversal, radial or circumferential, of radiation whose energy density is no greater than the emitted flux will damp an ultra high energy. Hence, it is unlikely that any reasonable configuration of acceleration can void disastrous photon energy loss. A different site for ultra high energy cosmic ray acceleration must be found

  14. Cosmic acceleration in a dust only universe via energy-momentum powered gravity

    Science.gov (United States)

    Akarsu, Özgür; Katırcı, Nihan; Kumar, Suresh

    2018-01-01

    We propose a modified theory of gravitation constructed by the addition of the term f (Tμ νTμ ν) to the Einstein-Hilbert action, and elaborate a particular case f (Tμ νTμ ν)=α (Tμ νTμ ν)η, where α and η are real constants, dubbed energy-momentum powered gravity (EMPG). We search for viable cosmologies arising from EMPG, especially in the context of the late-time accelerated expansion of the Universe. We investigate the ranges of the EMPG parameters (α ,η ) on theoretical as well as observational grounds leading to the late-time acceleration of the Universe with pressureless matter only, while keeping the successes of standard general relativity at early times. We find that η =0 corresponds to the Λ CDM model, whereas η ≠0 leads to a w CDM -type model. However, the underlying physics of the EMPG model is entirely different in the sense that the energy in the EMPG Universe is sourced by pressureless matter only. Moreover, the energy of the pressureless matter is not conserved, namely, in general it does not dilute as ρ ∝a-3 with the expansion of the Universe. Finally, we constrain the parameters of an EMPG-based cosmology with a recent compilation of 28 Hubble parameter measurements, and find that this model describes an evolution of the Universe similar to that in the Λ CDM model. We briefly discuss that EMPG can be unified with Starobinsky gravity to describe the complete history of the Universe including the inflationary era.

  15. STUXNET and the Impact on Accelerator Control Systems

    CERN Document Server

    Lüders, S

    2011-01-01

    2010 has seen wide news coverage of a new kind of computer attack, named "Stuxnet", targeting control systems. Due to its level of sophistication, it is widely acknowledged that this attack marks the very first case of a cyber-war of one country against the industrial infrastructure of another, although there is still much speculation about the details. Worse yet, experts recognize that Stuxnet might just be the beginning and that similar attacks, eventually with much less sophistication, but with much more collateral damage, can be expected in the years to come. Stuxnet was targeting a special model of the Siemens 400 PLC series. Similar modules are also deployed for accelerator controls like the LHC cryogenics or vacuum systems as well as the detector control systems in LHC experiments. Therefore, the aim of this presentation is to give an insight into what this new attack does and why it is deemed to be special. In particular, the potential impact on accelerator and experiment control sys...

  16. Analyzing radial acceleration with a smartphone acceleration sensor

    Science.gov (United States)

    Vogt, Patrik; Kuhn, Jochen

    2013-03-01

    This paper continues the sequence of experiments using the acceleration sensor of smartphones (for description of the function and the use of the acceleration sensor, see Ref. 1) within this column, in this case for analyzing the radial acceleration.

  17. Visual Fashion-Product Search at SK Planet

    OpenAIRE

    Kim, Taewan; Kim, Seyeong; Na, Sangil; Kim, Hayoon; Kim, Moonki; Jeon, Byoung-Ki

    2016-01-01

    We build a large-scale visual search system which finds similar product images given a fashion item. Defining similarity among arbitrary fashion-products is still remains a challenging problem, even there is no exact ground-truth. To resolve this problem, we define more than 90 fashion-related attributes, and combination of these attributes can represent thousands of unique fashion-styles. The fashion-attributes are one of the ingredients to define semantic similarity among fashion-product im...

  18. Automatic Planning of External Search Engine Optimization

    Directory of Open Access Journals (Sweden)

    Vita Jasevičiūtė

    2015-07-01

    Full Text Available This paper describes an investigation of the external search engine optimization (SEO action planning tool, dedicated to automatically extract a small set of most important keywords for each month during whole year period. The keywords in the set are extracted accordingly to external measured parameters, such as average number of searches during the year and for every month individually. Additionally the position of the optimized web site for each keyword is taken into account. The generated optimization plan is similar to the optimization plans prepared manually by the SEO professionals and can be successfully used as a support tool for web site search engine optimization.

  19. SANSparallel: interactive homology search against Uniprot.

    Science.gov (United States)

    Somervuo, Panu; Holm, Liisa

    2015-07-01

    Proteins evolve by mutations and natural selection. The network of sequence similarities is a rich source for mining homologous relationships that inform on protein structure and function. There are many servers available to browse the network of homology relationships but one has to wait up to a minute for results. The SANSparallel webserver provides protein sequence database searches with immediate response and professional alignment visualization by third-party software. The output is a list, pairwise alignment or stacked alignment of sequence-similar proteins from Uniprot, UniRef90/50, Swissprot or Protein Data Bank. The stacked alignments are viewed in Jalview or as sequence logos. The database search uses the suffix array neighborhood search (SANS) method, which has been re-implemented as a client-server, improved and parallelized. The method is extremely fast and as sensitive as BLAST above 50% sequence identity. Benchmarks show that the method is highly competitive compared to previously published fast database search programs: UBLAST, DIAMOND, LAST, LAMBDA, RAPSEARCH2 and BLAT. The web server can be accessed interactively or programmatically at http://ekhidna2.biocenter.helsinki.fi/cgi-bin/sans/sans.cgi. It can be used to make protein functional annotation pipelines more efficient, and it is useful in interactive exploration of the detailed evidence supporting the annotation of particular proteins of interest. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

  20. Accelerator research on MBE-4, an experimental multi-beam induction linac

    International Nuclear Information System (INIS)

    Meuth, H.; Fessenden, T.J.; Keefe, D.; Warwick, A.I.

    1988-06-01

    The multiple beam accelerator MBE-4 is a device for research toward a heavy ion driver for inertial confinement fusion, based on the induction linac concept. Its main goal is proof of the principle of current amplification by acceleration and controlled self-similar beam pulse compression. Into the 16-m long device four beams, each with an initial current of 10 mA are injected from a Marx-driven diode at 200 keV. The current amplification is up to nine-fold, with a final beam energy of about 800 keV in the middle of the bunch. Now that all the apparatus' accelerator sections have been completed, installed and aligned, and its unaccelerated transport properties have been studied, our experimental research has reached the crucial phase of implementing appropriate accelerator schedules that approximate self-similar current-pulse compression. These schedules are established through a close interplay of computations using a one-dimensional simulation code and a manual empirical tuning procedure. In a first approach, with a rather vigorous schedule that uses most of the accelerator modules to their voltage limits, we have determined the limits of our capability for controlled pulse compression, mainly due to waveform shaping of the driving pulse-forming networks. We shall report on these results. In the future, we will also aim for gentler schedules that would model more closely an inertial confinement fusion scenario. 8 refs., 11 figs., 1 tab

  1. A reproducible accelerated in vitro release testing method for PLGA microspheres.

    Science.gov (United States)

    Shen, Jie; Lee, Kyulim; Choi, Stephanie; Qu, Wen; Wang, Yan; Burgess, Diane J

    2016-02-10

    The objective of the present study was to develop a discriminatory and reproducible accelerated in vitro release method for long-acting PLGA microspheres with inner structure/porosity differences. Risperidone was chosen as a model drug. Qualitatively and quantitatively equivalent PLGA microspheres with different inner structure/porosity were obtained using different manufacturing processes. Physicochemical properties as well as degradation profiles of the prepared microspheres were investigated. Furthermore, in vitro release testing of the prepared risperidone microspheres was performed using the most common in vitro release methods (i.e., sample-and-separate and flow through) for this type of product. The obtained compositionally equivalent risperidone microspheres had similar drug loading but different inner structure/porosity. When microsphere particle size appeared similar, porous risperidone microspheres showed faster microsphere degradation and drug release compared with less porous microspheres. Both in vitro release methods investigated were able to differentiate risperidone microsphere formulations with differences in porosity under real-time (37 °C) and accelerated (45 °C) testing conditions. Notably, only the accelerated USP apparatus 4 method showed good reproducibility for highly porous risperidone microspheres. These results indicated that the accelerated USP apparatus 4 method is an appropriate fast quality control tool for long-acting PLGA microspheres (even with porous structures). Copyright © 2015 Elsevier B.V. All rights reserved.

  2. Folksonomical P2P File Sharing Networks Using Vectorized KANSEI Information as Search Tags

    Science.gov (United States)

    Ohnishi, Kei; Yoshida, Kaori; Oie, Yuji

    We present the concept of folksonomical peer-to-peer (P2P) file sharing networks that allow participants (peers) to freely assign structured search tags to files. These networks are similar to folksonomies in the present Web from the point of view that users assign search tags to information distributed over a network. As a concrete example, we consider an unstructured P2P network using vectorized Kansei (human sensitivity) information as structured search tags for file search. Vectorized Kansei information as search tags indicates what participants feel about their files and is assigned by the participant to each of their files. A search query also has the same form of search tags and indicates what participants want to feel about files that they will eventually obtain. A method that enables file search using vectorized Kansei information is the Kansei query-forwarding method, which probabilistically propagates a search query to peers that are likely to hold more files having search tags that are similar to the query. The similarity between the search query and the search tags is measured in terms of their dot product. The simulation experiments examine if the Kansei query-forwarding method can provide equal search performance for all peers in a network in which only the Kansei information and the tendency with respect to file collection are different among all of the peers. The simulation results show that the Kansei query forwarding method and a random-walk-based query forwarding method, for comparison, work effectively in different situations and are complementary. Furthermore, the Kansei query forwarding method is shown, through simulations, to be superior to or equal to the random-walk based one in terms of search speed.

  3. Community Petascale Project for Accelerator Science and Simulation: Advancing Computational Science for Future Accelerators and Accelerator Technologies

    Energy Technology Data Exchange (ETDEWEB)

    Spentzouris, P.; /Fermilab; Cary, J.; /Tech-X, Boulder; McInnes, L.C.; /Argonne; Mori, W.; /UCLA; Ng, C.; /SLAC; Ng, E.; Ryne, R.; /LBL, Berkeley

    2011-11-14

    The design and performance optimization of particle accelerators are essential for the success of the DOE scientific program in the next decade. Particle accelerators are very complex systems whose accurate description involves a large number of degrees of freedom and requires the inclusion of many physics processes. Building on the success of the SciDAC-1 Accelerator Science and Technology project, the SciDAC-2 Community Petascale Project for Accelerator Science and Simulation (ComPASS) is developing a comprehensive set of interoperable components for beam dynamics, electromagnetics, electron cooling, and laser/plasma acceleration modelling. ComPASS is providing accelerator scientists the tools required to enable the necessary accelerator simulation paradigm shift from high-fidelity single physics process modeling (covered under SciDAC1) to high-fidelity multiphysics modeling. Our computational frameworks have been used to model the behavior of a large number of accelerators and accelerator R&D experiments, assisting both their design and performance optimization. As parallel computational applications, the ComPASS codes have been shown to make effective use of thousands of processors. ComPASS is in the first year of executing its plan to develop the next-generation HPC accelerator modeling tools. ComPASS aims to develop an integrated simulation environment that will utilize existing and new accelerator physics modules with petascale capabilities, by employing modern computing and solver technologies. The ComPASS vision is to deliver to accelerator scientists a virtual accelerator and virtual prototyping modeling environment, with the necessary multiphysics, multiscale capabilities. The plan for this development includes delivering accelerator modeling applications appropriate for each stage of the ComPASS software evolution. Such applications are already being used to address challenging problems in accelerator design and optimization. The ComPASS organization

  4. Accelerator Service

    International Nuclear Information System (INIS)

    Champelovier, Y.; Ferrari, M.; Gardon, A.; Hadinger, G.; Martin, J.; Plantier, A.

    1998-01-01

    Since the cessation of the operation of hydrogen cluster accelerator in July 1996, four electrostatic accelerators were in operation and used by the peri-nuclear teams working in multidisciplinary collaborations. These are the 4 MV Van de Graaff accelerator, 2,5 MV Van de Graaff accelerator, 400 kV ion implanter as well as the 120 kV isotope separator

  5. Life estimation I and C cable insulation materials based on accelerated life testing accelerated life testing

    International Nuclear Information System (INIS)

    Santhosh, T.V.; Ramteke, P.K.; Shrestha, N.B.; Ahirwar, A.K.; Gopika, V.

    2016-01-01

    Accelerated Iife tests are becoming increasingly popular in today's industry due to the need for obtaining life data quickly and reliably. Life testing of products under higher stress levels without introducing additional failure modes can provide significant savings of both time and money. Correct analysis of data gathered via such accelerated life testing will yield parameters and other information for the product's life under use stress conditions. To be of practical use in assessing the operational behaviour of cables in NPPs, laboratory ageing aims to mimic the type of degradation observed under operational conditions. Conditions of testing therefore need to be carefully chosen to ensure that the degradation mechanism occurring in the accelerated tests are similar to those which occur in service. This paper presents the results of an investigation in which the elongation-at-break (EAB) measurements were carried on a typical control cable to predict the mean life at service conditions. A low voltage polyvinyl chloride (PVC) insulated and PVC sheathed control cable, used in NPP instrumentation and control (I and C) applications, was subjected thermal ageing at three elevated temperatures

  6. Recent electronic improvements to the Oak Ridge 25URC accelerator

    International Nuclear Information System (INIS)

    Ziegler, N.F.; Schulze, G.K.; Rochelle, J.W.; Milner, W.T.; Meigs, M.J.; McPherson, R.L.; Juras, R.C.

    1987-01-01

    A new chopper-buncher system has been installed in the 25URC accelerator injection line. The buncher is similar to the one used previously, but incorporates several significant improvements. The chopper is a new device to provide beam pulses for time-of-flight experiments. The accelerator charging system has been modified to increase reliability and improve chain monitoring. A display unit for beam profile monitors (BPM) is being developed. The display will allow the operator to observe four BPM traces simultaneously

  7. Annotated bibliography of Accelerator Technology Division research and development, 1978-1985

    International Nuclear Information System (INIS)

    Jameson, R.A.; Nicol, C.S.; Cochran, M.A.

    1985-09-01

    A bibliography is presented of unclassified published and in-house technical material written by members of the Accelerator Technology Division, Los Alamos National Laboratory, since its inception in January, 1978. The author and subject concordances in this report provide cross-reference to detailed citations kept in a computer database and a microfilm file of the documents. The citations include an abstract and other notes, and can be searched for key words and phrases

  8. New approaches for searching for the Dirac magnetic monopole

    International Nuclear Information System (INIS)

    Kukhtin, V.V.; Krivokhizhin, V.G.; Stetsenko, S.G.; Cheplakov, A.P.

    2012-01-01

    Three new approaches, not applied earlier, are proposed to search for the Dirac monopole - an object whose existence was proposed by P.Dirac more than 80 years ago to explain the electrical charge quantization. The first approach assumes that the monopole must be accelerated by a magnetic field, and such acceleration is constant in the magnetic field which is homogeneous and constant. The conclusion about the object movement nature can be drawn by measuring the time marks for equidistant registering planes. The second approach is supposed to reconstruct the movement trajectory in the homogeneous and permanent electrical field, which is the circle or its part for the magnetic monopole. The third approach is based on the constancy of energy losses by Dirac monopole due to medium ionization in the multilayer passive dielectric tracking detectors placed in the homogeneous and permanent electrical field

  9. Divide and Conquer (DC BLAST: fast and easy BLAST execution within HPC environments

    Directory of Open Access Journals (Sweden)

    Won Cheol Yim

    2017-06-01

    Full Text Available Bioinformatics is currently faced with very large-scale data sets that lead to computational jobs, especially sequence similarity searches, that can take absurdly long times to run. For example, the National Center for Biotechnology Information (NCBI Basic Local Alignment Search Tool (BLAST and BLAST+ suite, which is by far the most widely used tool for rapid similarity searching among nucleic acid or amino acid sequences, is highly central processing unit (CPU intensive. While the BLAST suite of programs perform searches very rapidly, they have the potential to be accelerated. In recent years, distributed computing environments have become more widely accessible and used due to the increasing availability of high-performance computing (HPC systems. Therefore, simple solutions for data parallelization are needed to expedite BLAST and other sequence analysis tools. However, existing software for parallel sequence similarity searches often requires extensive computational experience and skill on the part of the user. In order to accelerate BLAST and other sequence analysis tools, Divide and Conquer BLAST (DCBLAST was developed to perform NCBI BLAST searches within a cluster, grid, or HPC environment by using a query sequence distribution approach. Scaling from one (1 to 256 CPU cores resulted in significant improvements in processing speed. Thus, DCBLAST dramatically accelerates the execution of BLAST searches using a simple, accessible, robust, and parallel approach. DCBLAST works across multiple nodes automatically and it overcomes the speed limitation of single-node BLAST programs. DCBLAST can be used on any HPC system, can take advantage of hundreds of nodes, and has no output limitations. This freely available tool simplifies distributed computation pipelines to facilitate the rapid discovery of sequence similarities between very large data sets.

  10. Community petascale project for accelerator science and simulation: Advancing computational science for future accelerators and accelerator technologies

    International Nuclear Information System (INIS)

    Spentzouris, P.; Cary, J.; McInnes, L.C.; Mori, W.; Ng, C.; Ng, E.; Ryne, R.

    2008-01-01

    The design and performance optimization of particle accelerators are essential for the success of the DOE scientific program in the next decade. Particle accelerators are very complex systems whose accurate description involves a large number of degrees of freedom and requires the inclusion of many physics processes. Building on the success of the SciDAC-1 Accelerator Science and Technology project, the SciDAC-2 Community Petascale Project for Accelerator Science and Simulation (ComPASS) is developing a comprehensive set of interoperable components for beam dynamics, electromagnetics, electron cooling, and laser/plasma acceleration modelling. ComPASS is providing accelerator scientists the tools required to enable the necessary accelerator simulation paradigm shift from high-fidelity single physics process modeling (covered under SciDAC1) to high-fidelity multiphysics modeling. Our computational frameworks have been used to model the behavior of a large number of accelerators and accelerator R and D experiments, assisting both their design and performance optimization. As parallel computational applications, the ComPASS codes have been shown to make effective use of thousands of processors.

  11. Towards Efficient Search for Activity Trajectories

    DEFF Research Database (Denmark)

    Zheng, Kai; Shang, Shuo; Yuan, Jing

    2013-01-01

    , recent proliferation in location-based web applications (e.g., Foursquare, Facebook) has given rise to large amounts of trajectories associated with activity information, called activity trajectory. In this paper, we study the problem of efficient similarity search on activity trajectory database. Given...

  12. Preliminary Determination of Activation Products for a Varian Truebeam Linear Accelerator.

    Science.gov (United States)

    Waller, Edward; Ram, Rohan; Steadman, Ian

    2017-09-01

    Medical linear accelerators used to treat various forms of cancers are operated at a number of different energies. A by-product of the high-energy photons produced by accelerators is activation of components within the machine itself and its surrounding bunker. The activation products pose radiological and regulatory challenges during the operation of the accelerator as well as when it is time for final decommissioning. The Varian TrueBeam is a new state-of-the-art linear accelerator now operating in the Canadian market. There is currently limited information on the production of its activation products and the resulting impacts on operation and decommissioning. In this paper, activation products in the Varian TrueBeam accelerator are experimentally determined by performing gamma spectroscopy using a portable high purity germanium detector. A total of 10 isotopes are identified for the conditions tested, which include Na, Al, Mn, Ni, Cu, Cu, Br, Sb, Sb, W. The half-lives of these isotopes range from 2.3 min to 60.2 d. These preliminary results indicate that a decommissioning case similar to other radiotherapy accelerators can be made.

  13. Identification and Analysis of Multi-tasking Product Information Search Sessions with Query Logs

    Directory of Open Access Journals (Sweden)

    Xiang Zhou

    2016-09-01

    Full Text Available Purpose: This research aims to identify product search tasks in online shopping and analyze the characteristics of consumer multi-tasking search sessions. Design/methodology/approach: The experimental dataset contains 8,949 queries of 582 users from 3,483 search sessions. A sequential comparison of the Jaccard similarity coefficient between two adjacent search queries and hierarchical clustering of queries is used to identify search tasks. Findings: (1 Users issued a similar number of queries (1.43 to 1.47 with similar lengths (7.3-7.6 characters per task in mono-tasking and multi-tasking sessions, and (2 Users spent more time on average in sessions with more tasks, but spent less time for each task when the number of tasks increased in a session. Research limitations: The task identification method that relies only on query terms does not completely reflect the complex nature of consumer shopping behavior. Practical implications: These results provide an exploratory understanding of the relationships among multiple shopping tasks, and can be useful for product recommendation and shopping task prediction. Originality/value: The originality of this research is its use of query clustering with online shopping task identification and analysis, and the analysis of product search session characteristics.

  14. Quantifying the Search Behaviour of Different Demographics Using Google Correlate

    Science.gov (United States)

    Letchford, Adrian; Preis, Tobias; Moat, Helen Susannah

    2016-01-01

    Vast records of our everyday interests and concerns are being generated by our frequent interactions with the Internet. Here, we investigate how the searches of Google users vary across U.S. states with different birth rates and infant mortality rates. We find that users in states with higher birth rates search for more information about pregnancy, while those in states with lower birth rates search for more information about cats. Similarly, we find that users in states with higher infant mortality rates search for more information about credit, loans and diseases. Our results provide evidence that Internet search data could offer new insight into the concerns of different demographics. PMID:26910464

  15. Advanced concepts for acceleration

    International Nuclear Information System (INIS)

    Keefe, D.

    1986-07-01

    Selected examples of advanced accelerator concepts are reviewed. Such plasma accelerators as plasma beat wave accelerator, plasma wake field accelerator, and plasma grating accelerator are discussed particularly as examples of concepts for accelerating relativistic electrons or positrons. Also covered are the pulsed electron-beam, pulsed laser accelerator, inverse Cherenkov accelerator, inverse free-electron laser, switched radial-line accelerators, and two-beam accelerator. Advanced concepts for ion acceleration discussed include the electron ring accelerator, excitation of waves on intense electron beams, and two-wave combinations

  16. Photon losses in cosmic ray acceleration in active galactic nuclei

    International Nuclear Information System (INIS)

    Colgate, S.A.

    1984-01-01

    The usual assumption of the acceleration of ultrahigh energy cosmic rays, greater than or equal to 10 18 eV in quasars, Seyfert galaxies, and other active galactic nuclei is challenged on the basis of the photon interactions with the accelerated nucleons. This is similar to the effect of the black body radiation on particles > 10 20 eV for times of the age of the universe except that the photon spectrum is harder and the energy density greater by approx. = 10 13 . Hence, a single traversal, radial or circumferential, of radiation whose energy density is no greater than the emitted flux will damp an ultrahigh energy cosmic ray 10 20 eV by greater than 10 4 times its energy. Hence, it is unlikely that any reasonable configuration of acceleration can avoid disastrous photon energy loss. A different site for ultrahigh energy cosmic ray acceleration must be found

  17. Search for exotic baryons with the Sphinx facility

    International Nuclear Information System (INIS)

    Landsberg, L.G.

    1993-01-01

    In the experiments at the Sphinx facility in the proton beam of the IHEP accelerator (E p = 70 GeV) a number of diffractive production reactions were studied. Among them are p + N → (K + K - p) + N, p + N → (φp) + N, p + N → [Λ(1520)K + ] + N, p + N → [Σ(1385) 0 K + ] + N, as well as some other processes. The results of the search for narrow heavy baryon states, candidates for the cryptoexotic hadrons with hidden strangeness, are presented. 15 refs., 5 figs., 1 tab

  18. How to improve your PubMed/MEDLINE searches: 2. display settings, complex search queries and topic searching.

    Science.gov (United States)

    Fatehi, Farhad; Gray, Leonard C; Wootton, Richard

    2014-01-01

    The way that PubMed results are displayed can be changed using the Display Settings drop-down menu in the result screen. There are three groups of options: Format, Items per page and Sort by, which allow a good deal of control. The results from several searches can be temporarily stored on the Clipboard. Records of interest can be selected on the results page using check boxes and can then be combined, for example to form a reference list. The Related Citations is a valuable feature of PubMed that can provide a set of similar articles when you have identified a record of interest among the results. You can easily search for RCTs or reviews using the appropriate filters or field tags. If you are interested in clinical articles, rather than basic science or health service research, then the Clinical Queries tool on the PubMed home page can be used to retrieve them.

  19. The Heavy Photon Search beamline and its performance

    Energy Technology Data Exchange (ETDEWEB)

    Baltzell, N.; Egiyan, H.; Ehrhart, M.; Field, C.; Freyberger, A.; Girod, F.-X.; Holtrop, M.; Jaros, J.; Kalicy, G.; Maruyama, T.; McKinnon, B.; Moffeit, K.; Nelson, T.; Odian, A.; Oriunno, M.; Paremuzyan, R.; Stepanyan, S.; Tiefenback, M.; Uemura, S.; Ungaro, M.; Vance, H.

    2017-04-04

    The Heavy Photon Search (HPS) is an experiment to search for a hidden sector photon, aka a heavy photon or dark photon, in fixed target electroproduction at the Thomas Jefferson National Accelerator Facility (JLab). The HPS experiment searches for the e+e- decay of the heavy photon with bump hunt and detached vertex strategies using a compact, large acceptance forward spectrometer, consisting of a silicon microstrip detector (SVT) for tracking and vertexing, and a PbWO4 electromagnetic calorimeter for energy measurement and fast triggering. To achieve large acceptance and good vertexing resolution, the first layer of silicon detectors is placed just 10 cm downstream of the target with the sensor edges only 500 μm above and below the beam. Placing the SVT in such close proximity to the beam puts stringent requirements on the beam profile and beam position stability. As part of an approved engineering run, HPS took data in 2015 and 2016 at 1.05 GeV and 2.3 GeV beam energies, respectively. This paper describes the beam line and its performance during that data taking.

  20. Accelerating tube for the ''EG-1'' electrostatic accelerator

    International Nuclear Information System (INIS)

    Romanov, V.A.; Ivanov, V.V.; Krupnov, E.P.; Debin, V.K.; Dudkin, N.I.; Volodin, V.I.

    1980-01-01

    A design of an accelerating tube (AT) for an electrostatic accelerator of the EG-1 type is described. Primary consideration in the development of the AT has been given to increasing the electric strength of accelerating gaps, the vacuum conductivity and better insulator screening from charged particles. After AT vacuum and high-voltage ageing in the accelerator, a hydrogen ions beam of up to 80 μA has been produced. The beam was adequately shaped in the energy range from 1.8 to 5.0 MeV [ru

  1. Architecture of petawatt-class z-pinch accelerators

    International Nuclear Information System (INIS)

    Stygar, William A.; Mazarakis, Michael Gerrassimos; Cuneo, Michael Edward; Leeper, Ramon Joe; Ives, H.C.; Headley, D.I.; Wagoner, Tim C.; Porter, John Larry Jr.

    2006-01-01

    We have developed an accelerator architecture that can serve as the basis of the design of petawatt-class z-pinch drivers. The architecture has been applied to the design of two z-pinch accelerators, each of which can be contained within a 104-m-diameter cylindrical tank. One accelerator is driven by slow (∼1 (micro)s) Marx generators, which are a mature technology but which necessitate significant pulse compression to achieve the short pulses ( 4 capacitors, store 98 MJ, and erect to 5 MV; (ii) 600 water-dielectric triplate intermediate-store transmission lines, which also serve as pulse-forming lines; (iii) 600 5-MV laser-triggered gas switches; (iv) three monolithic radial-transmission-line impedance transformers, with triplate geometries and exponential impedance profiles; (v) a 6-level 5.5-m-diameter 15-MV vacuum insulator stack; (vi) six magnetically insulated vacuum transmission lines (MITLs); and (vii) a triple-post-hole vacuum convolute that adds the output currents of the six MITLs, and delivers the combined current to a z-pinch load. The accelerator delivers an effective peak current of 52 MA to a 10-mm-length z pinch that implodes in 95 ns, and 57 MA to a pinch that implodes in 120 ns. The LTD-driven accelerator includes monolithic radial transformers and a MITL system similar to those described above, but does not include intermediate-store transmission lines, multimegavolt gas switches, or a laser trigger system. Instead, this accelerator is driven by 210 LTD modules that include a total of 1 x 10 6 capacitors and 5 x 10 5 200-kV electrically triggered gas switches. The LTD accelerator stores 182 MJ and produces a peak electrical power of 1000 TW. The accelerator delivers an effective peak current of 68 MA to a pinch that implodes in 95 ns, and 75 MA to a pinch that implodes in 120 ns. Conceptually straightforward upgrades to these designs would deliver even higher pinch currents and faster implosions

  2. Role of sugammadex in accelerating postoperative discharge: A meta-analysis.

    Science.gov (United States)

    Carron, Michele; Zarantonello, Francesco; Lazzarotto, Nadia; Tellaroli, Paola; Ori, Carlo

    2017-06-01

    Sugammadex has been introduced for reversal of neuromuscular blockade (NMB) induced by rocuronium (or vecuronium). Although its efficacy and safety have been established, data are conflicting as to whether it accelerates discharge to the surgical ward compared with neostigmine, which is traditionally used for reversing NMB. The object of this systematic review and meta-analysis was to review the research comparing sugammadex and neostigmine in the context of patient discharge after general anesthesia. Systematic review and meta-analysis. University medical hospital. Five-hundred eighteen patients from six studies were included. A comprehensive search was conducted using PubMed, Web of Science, Google Scholar, and Cochrane Library electronic databases to identify randomized controlled trials written in English. Two reviewers independently selected the studies, extracted data regarding postoperative discharge, and assessed the trials' methodological quality and evidence level. Postoperative discharge time was determined from the operating room (OR) to the postanesthesia care unit (PACU) and from the PACU to the surgical ward. This study was conducted using PRISMA methodology. Time to discharge after NMB reversal with sugammadex or neostigmine. Compared with neostigmine, sugammadex was associated with a significantly faster discharge from the OR to the PACU (mean difference [MD]=22.14min, 95% CI (14.62, 29.67), Psugammadex than for neostigmine from the OR to the PACU (MD=5.58min, 95% CI (3.03, 8.14), P≤0.0001, I 2 =0%). However, discharge-readiness was similar in both groups for patients moving from the PACU to the surgical ward (MD=-1.10min, 95% CI (-5.69, 3.50), P=0.6394, I 2 =25.3%). Results from this meta-analysis suggest that sugammadex accelerates postoperative discharge of patients after general anesthesia compared with neostigmine. Copyright © 2017 Elsevier Inc. All rights reserved.

  3. Status report on the accelerators operation

    International Nuclear Information System (INIS)

    Biri, S.; Kormany, Z.; Berzi, I.; Racz, R.

    2011-01-01

    During 2011 our particle accelerators operated as scheduled, safely and without major or long breakdowns. The utilization rates of the accelerators were similar to the preceding year. The cyclotron delivered 1735 hours and the 40- years old 5 MeV Van de Graaff generator supplied more than 1900 hours. The 1 MeV Van de Graaff accelerator was also operated for several short basic physics experiments last year (84 hours) with requests for much more beamtime in 2012. The plasma and beam-on-target time at the ECR ion source was less than in previous years (322 hours) due to several time consuming technical developments in this laboratory. The isotope separator, as ion beam accelerator was utilized only for a few hours in 2011, since the research and development in this lab focused on other fields. Nevertheless it is continuously available for research requiring special deposition techniques and for isotope tracing studies. After judging and accepting the importance and quality of our accelerators and staff the title 'Strategic Research Infrastructure' was addressed to the Accelerator Center by the Hungarian authorities. In order to get access to the accelerators a new system was introduced. The beamtime (within the frames of the capacities) is available for everyone with equal chance if an acceptable scientific program is provided together with the request. The users have to contact our Program Advisory Committee (PAC). Since last year the requests - both from external or local users - must be delivered by filling out and e-sending on on-line form available in the homepage of the institute. In the next sub-chapters the 2011 operation and development details at the cyclotron, VdG-5 and ECR accelerators are summarized. Cyclotron operation. The operation of the cyclotron in 2011 was concentrated to the usual 9 months; January, July and August were reserved for maintenance and holidays. The overall working time of the accelerator was 2603 hours; the time used for systematic

  4. CAS CERN Accelerator School superconductivity in particle accelerators

    International Nuclear Information System (INIS)

    Turner, S.

    1989-01-01

    One of the objectives of the CERN Accelerator School is to run courses on specialised topics in the particle accelerator field. The present volume contains the proceedings of one such course, this time organized in conjunction with the Deutsches Elektronen Synchrotron (DESY) on the subject of superconductivity in particle accelerators. This course reflects the very considerable progress made over the last few years in the use of the technology for the magnet and radio-frequency systems of many large and small accelerators already in use or nearing completion, while also taking account of the development work now going on for future machines. The lectures cover the theory of superconductivity, cryogenics and accelerator magnets and cavities, while the seminars include superfluidity, superconductors, special magnets and the prospects for high-temperature superconductors. (orig.)

  5. A measurement of hadron production cross sections for the simulation of accelerator neutrino beams and a search for muon-neutrino to electron-neutrino oscillations in the Δm2 about equals 1-eV2 region

    Energy Technology Data Exchange (ETDEWEB)

    Schmitz, David W. [Columbia Univ., New York, NY (United States)

    2008-01-01

    A measurement of hadron production cross-sections for the simulation of accelerator neutrino beams and a search for muon neutrino to electron neutrino oscillations in the Δm2 ~ 1 eV2} region. This dissertation presents measurements from two different high energy physics experiments with a very strong connection: the Hadron Production (HARP) experiment located at CERN in Geneva, Switzerland, and the Mini Booster Neutrino Experiment (Mini-BooNE) located at Fermilab in Batavia, Illinois.

  6. Similarity solutions of time-dependent relativistic radiation-hydrodynamical plane-parallel flows

    Science.gov (United States)

    Fukue, Jun

    2018-04-01

    Similarity solutions are examined for the frequency-integrated relativistic radiation-hydrodynamical flows, which are described by the comoving quantities. The flows are vertical plane-parallel time-dependent ones with a gray opacity coefficient. For adequate boundary conditions, the flows are accelerated in a somewhat homologous manner, but terminate at some singular locus, which originates from the pathological behavior in relativistic radiation moment equations truncated in finite orders.

  7. Search for SUSY in gauge mediated and anomaly mediated supersymmetry breaking models

    International Nuclear Information System (INIS)

    Nunnnemann, Thomas

    2004-01-01

    In this note, recent results on the search for Gauge Mediated Supersymmetry Breaking (GMSB) and Anomaly Mediated Supersymmetry Breaking (AMSB) at the LEP and Tevatron colliders are summarized. We report on DOe's search for GMSB in di-photon events with large missing transverse energy and discuss the sensitivity of similar searches based on future Tevatron integrated luminosities. (orig.)

  8. Study on the limiting acceleration rate in the VLEPP linear accelerator

    International Nuclear Information System (INIS)

    Balakin, V.E.; Brezhnev, O.N.; Zakhvatkin, M.N.

    1987-01-01

    To realize the design of colliding linear electron-positron beams it is necessary to solve the radical problem of production of accelerating structure with acceleration rate of approximately 100 MeV/m which can accelerate 10 12 particles in a bunch. Results of experimental studies of the limiting acceleration rate in the VLEPP accelerating structure are presented. Accelerating sections of different length were tested. When testing sections 29 cm long the acceleration rate of 55 MeV/m was attained, and for 1 m section the value reached 40 MeV/m. The maximum rate of acceleration (90 MeV/m) was attained when electric field intensity on the structure surface constituted more than 150 MV/m

  9. Particle-accelerator decommissioning

    International Nuclear Information System (INIS)

    Opelka, J.H.; Mundis, R.L.; Marmer, G.J.; Peterson, J.M.; Siskind, B.; Kikta, M.J.

    1979-12-01

    Generic considerations involved in decommissioning particle accelerators are examined. There are presently several hundred accelerators operating in the United States that can produce material containing nonnegligible residual radioactivity. Residual radioactivity after final shutdown is generally short-lived induced activity and is localized in hot spots around the beam line. The decommissioning options addressed are mothballing, entombment, dismantlement with interim storage, and dismantlement with disposal. The recycle of components or entire accelerators following dismantlement is a definite possibility and has occurred in the past. Accelerator components can be recycled either immediately at accelerator shutdown or following a period of storage, depending on the nature of induced activation. Considerations of cost, radioactive waste, and radiological health are presented for four prototypic accelerators. Prototypes considered range from small accelerators having minimal amounts of radioactive mmaterial to a very large accelerator having massive components containing nonnegligible amounts of induced activation. Archival information on past decommissionings is presented, and recommendations concerning regulations and accelerator design that will aid in the decommissioning of an accelerator are given

  10. Search for νμ → νe oscillations

    International Nuclear Information System (INIS)

    Godley, A.R.

    1998-01-01

    Full text: Neutrino oscillations, the changing of neutrino flavour state from one of τ, μ or e, to another, are proof of massive neutrinos, in turn pointing to Physics beyond the Standard Model, and so are of great current interest. Solar and atmospheric neutrino results suggested evidence for neutrino oscillations. Further, a tau neutrino mass of ∼ 10 eV could supply the missing mass needed to close the Universe. To satisfy the increasing interest, CERN's Neutrino Physics Program commissioned two concurrent experiments to investigate the possibility of neutrino oscillations, one of which is NOMAD, Neutrino Oscillation Magnetic Detector. NOMAD was designed to verify or deny the earlier positive neutrino oscillations results by searching for muon to tauon neutrino oscillations in accelerator neutrinos. The LSND experiment later provided evidence for muon to electron neutrino oscillations, but due to the multi-purpose design of NOMAD, it was also possible to investigate this channel. Moreover, the area of phase space being uncovered, (related to neutrino energy and oscillation length), overlaps considerably with that of LSND. An electron neutrino oscillation search involves looking for electron neutrinos in what is primarily a muon neutrino beam, with just a small contamination of electron neutrinos. It is surmised that the excess of electron neutrinos come from oscillated muon neutrinos. This type of search is called an appearance search. The principles of such a search will be detailed herein. These include a breakdown of the CERN Neutrino Beam and a method for detecting and collating different neutrino flavours at NOMAD

  11. Computing Principal Eigenvectors of Large Web Graphs: Algorithms and Accelerations Related to PageRank and HITS

    Science.gov (United States)

    Nagasinghe, Iranga

    2010-01-01

    This thesis investigates and develops a few acceleration techniques for the search engine algorithms used in PageRank and HITS computations. PageRank and HITS methods are two highly successful applications of modern Linear Algebra in computer science and engineering. They constitute the essential technologies accounted for the immense growth and…

  12. Accelerating artificial intelligence with reconfigurable computing

    Science.gov (United States)

    Cieszewski, Radoslaw

    Reconfigurable computing is emerging as an important area of research in computer architectures and software systems. Many algorithms can be greatly accelerated by placing the computationally intense portions of an algorithm into reconfigurable hardware. Reconfigurable computing combines many benefits of both software and ASIC implementations. Like software, the mapped circuit is flexible, and can be changed over the lifetime of the system. Similar to an ASIC, reconfigurable systems provide a method to map circuits into hardware. Reconfigurable systems therefore have the potential to achieve far greater performance than software as a result of bypassing the fetch-decode-execute operations of traditional processors, and possibly exploiting a greater level of parallelism. Such a field, where there is many different algorithms which can be accelerated, is an artificial intelligence. This paper presents example hardware implementations of Artificial Neural Networks, Genetic Algorithms and Expert Systems.

  13. Extending the Search for Muon Neutrinos Coincident with Gamma-Ray Bursts in IceCube Data

    Energy Technology Data Exchange (ETDEWEB)

    Aartsen, M. G. [Department of Physics, University of Adelaide, Adelaide, 5005 (Australia); Ackermann, M. [DESY, D-15735 Zeuthen (Germany); Adams, J. [Dept. of Physics and Astronomy, University of Canterbury, Private Bag 4800, Christchurch (New Zealand); Aguilar, J. A.; Ansseau, I. [Université Libre de Bruxelles, Science Faculty CP230, B-1050 Brussels (Belgium); Ahlers, M. [Dept. of Physics and Wisconsin IceCube Particle Astrophysics Center, University of Wisconsin, Madison, WI 53706 (United States); Ahrens, M. [Oskar Klein Centre and Dept. of Physics, Stockholm University, SE-10691 Stockholm (Sweden); Samarai, I. Al [Département de Physique Nucléaire et Corpusculaire, Université de Genève, CH-1211 Genève (Switzerland); Altmann, D.; Anton, G. [Erlangen Centre for Astroparticle Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, D-91058 Erlangen (Germany); Andeen, K. [Department of Physics, Marquette University, Milwaukee, WI 53201 (United States); Anderson, T. [Dept. of Physics, Pennsylvania State University, University Park, PA 16802 (United States); Archinger, M.; Baum, V. [Institute of Physics, University of Mainz, Staudinger Weg 7, D-55099 Mainz (Germany); Argüelles, C.; Axani, S. [Dept. of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Auffenberg, J. [III. Physikalisches Institut, RWTH Aachen University, D-52056 Aachen (Germany); Bai, X. [Physics Department, South Dakota School of Mines and Technology, Rapid City, SD 57701 (United States); Barwick, S. W. [Dept. of Physics and Astronomy, University of California, Irvine, CA 92697 (United States); Collaboration: IceCube Collaboration; and others

    2017-07-10

    We present an all-sky search for muon neutrinos produced during the prompt γ -ray emission of 1172 gamma-ray bursts (GRBs) with the IceCube Neutrino Observatory. The detection of these neutrinos would constitute evidence for ultra-high-energy cosmic-ray (UHECR) production in GRBs, as interactions between accelerated protons and the prompt γ -ray field would yield charged pions, which decay to neutrinos. A previously reported search for muon neutrino tracks from northern hemisphere GRBs has been extended to include three additional years of IceCube data. A search for such tracks from southern hemisphere GRBs in five years of IceCube data has been introduced to enhance our sensitivity to the highest energy neutrinos. No significant correlation between neutrino events and observed GRBs is seen in the new data. Combining this result with previous muon neutrino track searches and a search for cascade signature events from all neutrino flavors, we obtain new constraints for single-zone fireball models of GRB neutrino and UHECR production.

  14. Source-to-accelerator quadrupole matching section for a compact linear accelerator

    Science.gov (United States)

    Seidl, P. A.; Persaud, A.; Ghiorso, W.; Ji, Q.; Waldron, W. L.; Lal, A.; Vinayakumar, K. B.; Schenkel, T.

    2018-05-01

    Recently, we presented a new approach for a compact radio-frequency (RF) accelerator structure and demonstrated the functionality of the individual components: acceleration units and focusing elements. In this paper, we combine these units to form a working accelerator structure: a matching section between the ion source extraction grids and the RF-acceleration unit and electrostatic focusing quadrupoles between successive acceleration units. The matching section consists of six electrostatic quadrupoles (ESQs) fabricated using 3D-printing techniques. The matching section enables us to capture more beam current and to match the beam envelope to conditions for stable transport in an acceleration lattice. We present data from an integrated accelerator consisting of the source, matching section, and an ESQ doublet sandwiched between two RF-acceleration units.

  15. Electrostatic accelerators

    CERN Document Server

    Hinterberger, F

    2006-01-01

    The principle of electrostatic accelerators is presented. We consider Cockcroft– Walton, Van de Graaff and Tandem Van de Graaff accelerators. We resume high voltage generators such as cascade generators, Van de Graaff band generators, Pelletron generators, Laddertron generators and Dynamitron generators. The speci c features of accelerating tubes, ion optics and methods of voltage stabilization are described. We discuss the characteristic beam properties and the variety of possible beams. We sketch possible applications and the progress in the development of electrostatic accelerators.

  16. Design for simultaneous acceleration of stable and unstable beams in a superconducting heavy-ion linear accelerator for RISP

    Science.gov (United States)

    Kim, Jongwon; Son, Hyock-Jun; Park, Young-Ho

    2017-11-01

    The post-accelerator of isotope separation on-line (ISOL) system for rare isotope science project (RISP) is a superconducting linear accelerator (SC-linac) with a DC equivalent voltage of around 160 MV. An isotope beam extracted from the ISOL is in a charge state of 1+ and its charge state is increased to n+ by charge breeding with an electron beam ion source (EBIS). The charge breeding takes tens of ms and the pulse width of extracted beam from the EBIS is tens of μs, which operates at up to 30 Hz. Consequently a large portion of radio frequency (rf) time of the post SC-linac is unused. The post-linac is equipped also with an electron cyclotron resonance (ECR) ion source for stable ion acceleration. Thanks to the large phase acceptance of SC-linac, it is possible to accelerate simultaneously both stable and radioisotope ions with a similar charge to mass ratio by sharing rf time. This operation scheme is implemented for RISP with the addition of an electric chopper and magnetic kickers. The facility will be capable of providing the users of the ISOL and in-flight fragmentation (IF) systems with different beams simultaneously, which would help nuclear science users in obtaining a beam time as high-precision measurements often need long hours.

  17. Acceleration of 14C beams in electrostatic accelerators

    International Nuclear Information System (INIS)

    Rowton, L.J.; Tesmer, J.R.

    1981-01-01

    Operational problems in the production and acceleration of 14 C beams for nuclear structure research in Los Alamos National Laboratory's Van de Graaff accelerators are discussed. Methods for the control of contamination in ion sources, accelerators and personnel are described. Sputter source target fabrication techniques and the relative beam production efficiencies of various types of bound particulate carbon sputter source targets are presented

  18. Probability-neighbor method of accelerating geometry treatment in reactor Monte Carlo code RMC

    International Nuclear Information System (INIS)

    She, Ding; Li, Zeguang; Xu, Qi; Wang, Kan; Yu, Ganglin

    2011-01-01

    Probability neighbor method (PNM) is proposed in this paper to accelerate geometry treatment of Monte Carlo (MC) simulation and validated in self-developed reactor Monte Carlo code RMC. During MC simulation by either ray-tracking or delta-tracking method, large amounts of time are spent in finding out which cell one particle is located in. The traditional way is to search cells one by one with certain sequence defined previously. However, this procedure becomes very time-consuming when the system contains a large number of cells. Considering that particles have different probability to enter different cells, PNM method optimizes the searching sequence, i.e., the cells with larger probability are searched preferentially. The PNM method is implemented in RMC code and the numerical results show that the considerable time of geometry treatment in MC calculation for complicated systems is saved, especially effective in delta-tracking simulation. (author)

  19. Multiperiodic accelerator structures for linear particle accelerators

    International Nuclear Information System (INIS)

    Tran, D.T.

    1975-01-01

    High efficiency linear accelerator structures, comprised of a succession of cylindrical resonant cavities for acceleration, are described. Coupling annular cavities are located at the periphery, each being coupled to two adjacent cylindrical cavities. (auth)

  20. Department of Accelerator Physics and Technology - Overview

    International Nuclear Information System (INIS)

    Plawski, E.

    2007-01-01

    superconducting cavity RF power couplers. 18 MeV Electron Accelerator Stand with the linear accelerator - Saturn was prepared for experimental work, and can be used in neutron detectors investigation and for accelerating structures research. To increase the reliability of operation, upgrading of the computer control system is foreseen next year. The aim of the preliminary study of accelerating structures in C-band is the search for electron accelerator miniaturization. At higher frequencies, much higher accelerating fields can be applied and as the wavelength becomes shorter, the overall size of the structure and various components becomes smaller. In 2006 the main physical parameters of 5720 MHz SW side coupled structures were optimized. For that frequency there exist on the market suitable high power klystrons and a variety of necessary microwave equipment. Monte Carlo simulations using the BEAMnrc/EGSnrc were carried out to study the influence of possible errors in assigning of CT (coefficients of X ray attenuation in tissue) on calculated ion range in hadron therapy. This work was done in Heidelberg by A.Wysocka-Rabin in the frame of our collaboration with DKFZ. In ENEA-Frascati a linear accelerator for protons called TOP (Terapia Oncologica con Protoni, Oncological Proton Therapy) is under realization. Basically it is a proton linac of modified Alvarez type working on 3000 MHz frequency and delivering a beam in the energy range from 65 MeV to 200 MeV. In 2005 the contract was signed between ENEA and IPJ-Swierk on the basis of which the Accelerator Physics Dpt. of IPJ will design, produce and deliver to Frascati the input section of the 65 MeV linac. This section of SCDTL type will increase the proton energy from 7 to 17 MeV. The design is almost finished; many elements are manufactured and ready for assembling. This will take place in of 2007. (author)

  1. Microdroplets Accelerate Ring Opening of Epoxides

    Science.gov (United States)

    Lai, Yin-Hung; Sathyamoorthi, Shyam; Bain, Ryan M.; Zare, Richard N.

    2018-05-01

    The nucleophilic opening of an epoxide is a classic organic reaction that has widespread utility in both academic and industrial applications. We have studied the reaction of limonene oxide with morpholine to form 1-methyl-2-morpholino-4-(prop-1-en-2-yl) cyclohexan-1-ol in bulk solution and in electrosprayed microdroplets with a 1:1 v/ v water/methanol solvent system. We find that even after 90 min at room temperature, there is no product detected by nuclear magnetic resonance spectroscopy in bulk solution whereas in room-temperature microdroplets (2-3 μm in diameter), the yield is already 0.5% in a flight time of 1 ms as observed by mass spectrometry. This constitutes a rate acceleration of 105 in the microdroplet environment, if we assume that as much as 5% of product is formed in bulk after 90 min of reaction time. We examine how the reaction rate depends on droplet size, solvent composition, sheath gas pressure, and applied voltage. These factors profoundly influence the extent of reaction. This dramatic acceleration is not limited to just one system. We have also found that the nucleophilic opening of cis-stilbene oxide by morpholine is similarly accelerated. Such large acceleration factors in reaction rates suggest the use of microdroplets for ring opening of epoxides in other systems, which may have practical significance if such a procedure could be scaled. [Figure not available: see fulltext.

  2. Microdroplets Accelerate Ring Opening of Epoxides

    Science.gov (United States)

    Lai, Yin-Hung; Sathyamoorthi, Shyam; Bain, Ryan M.; Zare, Richard N.

    2018-03-01

    The nucleophilic opening of an epoxide is a classic organic reaction that has widespread utility in both academic and industrial applications. We have studied the reaction of limonene oxide with morpholine to form 1-methyl-2-morpholino-4-(prop-1-en-2-yl) cyclohexan-1-ol in bulk solution and in electrosprayed microdroplets with a 1:1 v/v water/methanol solvent system. We find that even after 90 min at room temperature, there is no product detected by nuclear magnetic resonance spectroscopy in bulk solution whereas in room-temperature microdroplets (2-3 μm in diameter), the yield is already 0.5% in a flight time of 1 ms as observed by mass spectrometry. This constitutes a rate acceleration of 105 in the microdroplet environment, if we assume that as much as 5% of product is formed in bulk after 90 min of reaction time. We examine how the reaction rate depends on droplet size, solvent composition, sheath gas pressure, and applied voltage. These factors profoundly influence the extent of reaction. This dramatic acceleration is not limited to just one system. We have also found that the nucleophilic opening of cis-stilbene oxide by morpholine is similarly accelerated. Such large acceleration factors in reaction rates suggest the use of microdroplets for ring opening of epoxides in other systems, which may have practical significance if such a procedure could be scaled. [Figure not available: see fulltext.

  3. NASA's GeneLab Phase II: Federated Search and Data Discovery

    Science.gov (United States)

    Berrios, Daniel C.; Costes, Sylvain V.; Tran, Peter B.

    2017-01-01

    GeneLab is currently being developed by NASA to accelerate 'open science' biomedical research in support of the human exploration of space and the improvement of life on earth. Phase I of the four-phase GeneLab Data Systems (GLDS) project emphasized capabilities for submission, curation, search, and retrieval of genomics, transcriptomics and proteomics ('omics') data from biomedical research of space environments. The focus of development of the GLDS for Phase II has been federated data search for and retrieval of these kinds of data across other open-access systems, so that users are able to conduct biological meta-investigations using data from a variety of sources. Such meta-investigations are key to corroborating findings from many kinds of assays and translating them into systems biology knowledge and, eventually, therapeutics.

  4. NASAs GeneLab Phase II: Federated Search and Data Discovery

    Science.gov (United States)

    Berrios, Daniel C.; Costes, Sylvain; Tran, Peter

    2017-01-01

    GeneLab is currently being developed by NASA to accelerate open science biomedical research in support of the human exploration of space and the improvement of life on earth. Phase I of the four-phase GeneLab Data Systems (GLDS) project emphasized capabilities for submission, curation, search, and retrieval of genomics, transcriptomics and proteomics (omics) data from biomedical research of space environments. The focus of development of the GLDS for Phase II has been federated data search for and retrieval of these kinds of data across other open-access systems, so that users are able to conduct biological meta-investigations using data from a variety of sources. Such meta-investigations are key to corroborating findings from many kinds of assays and translating them into systems biology knowledge and, eventually, therapeutics.

  5. Beam transport through electrostatic accelerators and matching into post accelerators

    International Nuclear Information System (INIS)

    Larson, J.D.

    1986-01-01

    Ion beam transport through electrostatic acceleration is briefly reviewed. Topics discussed include injection, matching into the low-energy acceleration stage, matching from the terminal stripper into the high-energy stage, transport to a post accelerator, space charge, bunching isochronism, dispersion and charge selection. Beam transport plans for the proposed Vivitron accelerator are described. (orig.)

  6. Visual search in barn owls: Task difficulty and saccadic behavior.

    Science.gov (United States)

    Orlowski, Julius; Ben-Shahar, Ohad; Wagner, Hermann

    2018-01-01

    How do we find what we are looking for? A target can be in plain view, but it may be detected only after extensive search. During a search we make directed attentional deployments like saccades to segment the scene until we detect the target. Depending on difficulty, the search may be fast with few attentional deployments or slow with many, shorter deployments. Here we study visual search in barn owls by tracking their overt attentional deployments-that is, their head movements-with a camera. We conducted a low-contrast feature search, a high-contrast orientation conjunction search, and a low-contrast orientation conjunction search, each with set sizes varying from 16 to 64 items. The barn owls were able to learn all of these tasks and showed serial search behavior. In a subsequent step, we analyzed how search behavior of owls changes with search complexity. We compared the search mechanisms in these three serial searches with results from pop-out searches our group had reported earlier. Saccade amplitude shortened and fixation duration increased in difficult searches. Also, in conjunction search saccades were guided toward items with shared target features. These data suggest that during visual search, barn owls utilize mechanisms similar to those that humans use.

  7. Computer programs in accelerator physics

    International Nuclear Information System (INIS)

    Keil, E.

    1984-01-01

    Three areas of accelerator physics are discussed in which computer programs have been applied with much success: i) single-particle beam dynamics in circular machines, i.e. the design and matching of machine lattices; ii) computations of electromagnetic fields in RF cavities and similar objects, useful for the design of RF cavities and for the calculation of wake fields; iii) simulation of betatron and synchrotron oscillations in a machine with non-linear elements, e.g. sextupoles, and of bunch lengthening due to longitudinal wake fields. (orig.)

  8. Accelerated in vitro release testing of implantable PLGA microsphere/PVA hydrogel composite coatings.

    Science.gov (United States)

    Shen, Jie; Burgess, Diane J

    2012-01-17

    Dexamethasone loaded poly(lactic-co-glycolic acid) (PLGA) microsphere/PVA hydrogel composites have been investigated as an outer drug-eluting coating for implantable devices such as glucose sensors to counter negative tissue responses to implants. The objective of this study was to develop a discriminatory, accelerated in vitro release testing method for this drug-eluting coating using United States Pharmacopeia (USP) apparatus 4. Polymer degradation and drug release kinetics were investigated under "real-time" and accelerated conditions (i.e. extreme pH, hydro-alcoholic solutions and elevated temperatures). Compared to "real-time" conditions, the initial burst and lag phases were similar using hydro-alcoholic solutions and extreme pH conditions, while the secondary apparent zero-order release phase was slightly accelerated. Elevated temperatures resulted in a significant acceleration of dexamethasone release. The accelerated release data were able to predict "real-time" release when applying the Arrhenius equation. Microsphere batches with faster and slower release profiles were investigated under "real-time" and elevated temperature (60°C) conditions to determine the discriminatory ability of the method. The results demonstrated both the feasibility and the discriminatory ability of this USP apparatus 4 method for in vitro release testing of drug loaded PLGA microsphere/PVA hydrogel composites. This method may be appropriate for similar drug/device combination products and drug delivery systems. Copyright © 2011 Elsevier B.V. All rights reserved.

  9. Towards an unbiased, full-sky clustering search with IceCube in real time

    Energy Technology Data Exchange (ETDEWEB)

    Bernardini, Elisa; Franckowiak, Anna; Kintscher, Thomas; Kowalski, Marek; Stasik, Alexander [DESY, Zeuthen (Germany); Collaboration: IceCube-Collaboration

    2016-07-01

    The IceCube neutrino observatory is a 1 km{sup 3} detector for Cherenkov light in the ice at the South Pole. Having observed the presence of a diffuse astrophysical neutrino flux, static point source searches have come up empty handed. Thus, transient and variable objects emerge as promising, detectable source candidates. An unbiased, full-sky clustering search - run in real time - can find neutrino events with close temporal and spatial proximity. The most significant of these clusters serve as alerts to third-party observatories in order to obtain a complete picture of cosmic accelerators. The talk showcases the status and prospects of this project.

  10. An Analysis of the Applicability of Federal Law Regarding Hash-Based Searches of Digital Media

    Science.gov (United States)

    2014-06-01

    similarity matching, Fourth Amend- ment, federal law, search and seizure, warrant search, consent search, border search. 15. NUMBER OF PAGES 107 16. PRICE ...containing a white powdery substance labeled flour [53]. 3.3.17 United States v Heckenkamp 482 F.3d 1142 (9th Circuit 2007) People have a reasonable

  11. Extension of frequency-based dissimilarity for retrieving similar plasma waveforms

    International Nuclear Information System (INIS)

    Hochin, Teruhisa; Koyama, Katsumasa; Nakanishi, Hideya; Kojima, Mamoru

    2008-01-01

    Some computer-aided assistance in finding the waveforms similar to a waveform has become indispensable for accelerating data analysis in the plasma experiments. For the slowly-varying waveforms and those having time-sectional oscillation patterns, the methods using the Fourier series coefficients of waveforms in calculating the dissimilarity have successfully improved the performance in retrieving similar waveforms. This paper treats severely-varying waveforms, and proposes two extensions to the dissimilarity of waveforms. The first extension is to capture the difference of the importance of the Fourier series coefficients of waveforms against frequency. The second extension is to consider the outlines of waveforms. The correctness of the extended dissimilarity is experimentally evaluated by using the metrics used in evaluating that of the information retrieval, i.e. precision and recall. The experimental results show that the extended dissimilarity could improve the correctness of the similarity retrieval of plasma waveforms

  12. Can Accelerators Accelerate Learning?

    International Nuclear Information System (INIS)

    Santos, A. C. F.; Fonseca, P.; Coelho, L. F. S.

    2009-01-01

    The 'Young Talented' education program developed by the Brazilian State Funding Agency (FAPERJ)[1] makes it possible for high-schools students from public high schools to perform activities in scientific laboratories. In the Atomic and Molecular Physics Laboratory at Federal University of Rio de Janeiro (UFRJ), the students are confronted with modern research tools like the 1.7 MV ion accelerator. Being a user-friendly machine, the accelerator is easily manageable by the students, who can perform simple hands-on activities, stimulating interest in physics, and getting the students close to modern laboratory techniques.

  13. Can Accelerators Accelerate Learning?

    Science.gov (United States)

    Santos, A. C. F.; Fonseca, P.; Coelho, L. F. S.

    2009-03-01

    The 'Young Talented' education program developed by the Brazilian State Funding Agency (FAPERJ) [1] makes it possible for high-schools students from public high schools to perform activities in scientific laboratories. In the Atomic and Molecular Physics Laboratory at Federal University of Rio de Janeiro (UFRJ), the students are confronted with modern research tools like the 1.7 MV ion accelerator. Being a user-friendly machine, the accelerator is easily manageable by the students, who can perform simple hands-on activities, stimulating interest in physics, and getting the students close to modern laboratory techniques.

  14. Search for semileptonic decays of photoproduced charmed mesons

    International Nuclear Information System (INIS)

    Coleman, R.N.

    1977-01-01

    In the broad band neutral beam at Fermilab, a search for photoproduction of charmed D mesons was done using photons of 100 to 300 GeV. The reaction considered was γ + Be → DantiD + X, leptons + ..., K 0 /sub s/nπ/sup +-/. No statistically significant evidence for D production is observed based on the K 0 /sub s/nπ/sup +-/ mass spectrum. The sensitivity of the search is commensurate with theoretical estimates of sigma(γp → DantiD + X) approximately 500 nb, however this is dependent on branching ratios and photoproduction models. Data are given on a similar search for semileptonic decays of charmed baryons. 48 references

  15. Quantum signature scheme based on a quantum search algorithm

    International Nuclear Information System (INIS)

    Yoon, Chun Seok; Kang, Min Sung; Lim, Jong In; Yang, Hyung Jin

    2015-01-01

    We present a quantum signature scheme based on a two-qubit quantum search algorithm. For secure transmission of signatures, we use a quantum search algorithm that has not been used in previous quantum signature schemes. A two-step protocol secures the quantum channel, and a trusted center guarantees non-repudiation that is similar to other quantum signature schemes. We discuss the security of our protocol. (paper)

  16. Acceleration of iterative tomographic reconstruction using graphics processors

    International Nuclear Information System (INIS)

    Belzunce, M.A.; Osorio, A.; Verrastro, C.A.

    2009-01-01

    Using iterative algorithms for image reconstruction in 3 D Positron Emission Tomography has shown to produce images with better quality than analytical methods. How ever, these algorithms are computationally expensive. New Graphic Processor Units (GPU) provides high performance at low cost and also programming tools that make possible to execute parallel algorithms easily in scientific applications. In this work, we try to achieve an acceleration of image reconstruction algorithms in 3 D PET by using a GPU. A parallel implementation of the algorithm ML-EM 3 D was developed using Siddon algorithm as Projector and Back-projector. Results show that accelerations of more than one order of magnitude can be achieved, keeping similar image quality. (author)

  17. Search for heavy quarks at panti p colliders

    International Nuclear Information System (INIS)

    Kroll, I.J.

    1989-01-01

    At present, the Fermilab and CERN panti p colliders with √s = 1.8 TeV and 0.63 TeV, respectively, provide the highest mass reach of existing accelerators for finding new particles. In particular, these colliders can be used to search for heavy quarks. The upper limit of 1.2x10 -3 (90% CL) on BR(B 0 → μ + μ - X) is strong indirect evidence that the charge 2/3 SU(2) partner of the bottom quark, usually called the top quark, exists. In addition, present experimental data do not exclude a fourth generation of quarks and leptons. A search for a fourth-generation, charge 1/3 quark (here referred to as the b' quark) should be made. The present limits from e + e - colliders on the masses of these particles are m t > 27.4 GeV/c 2 (95% CL) and m b ' > 25.5 GeV/c 2 (95% CL). (orig.)

  18. A search for $W\\pm H \\to\\mu\

    CERN Document Server

    Anastasoaie, Mirunna; Filthaut, F

    2008-01-01

    This thesis describes a search for the Higgs boson in $D0$ data taken between April 2002 and February 2006. The search focuses on associated $W^{\\pm} H$ production, where the $W^{\\pm}$ decays to a muon and a neutrino and the Higgs boson into a $b\\overline{b}$ pair. Chapter 2 introduces the Standard Model and the Higgs mechanism. Chapter 3 describes the Tevatron particle accelerator and the $D0$ detector. The methods and algorithms used to acquire and reconstruct the data used in the analysis are presented in Chapter 4. Since the Higgs boson most often decays into a bb pair, the identification of jets originating from bottom quarks is very important. Chapter 5 describes in detail a Neural Net-based tool used for the identification of b-jets. The tool uses information from previously developed tagging algorithms used in $D0$ and improves the efficiency for finding b-jets.

  19. Accelerations in Flight

    Science.gov (United States)

    Doolittle, J H

    1925-01-01

    This work on accelerometry was done at McCook Field for the purpose of continuing the work done by other investigators and obtaining the accelerations which occur when a high-speed pursuit airplane is subjected to the more common maneuvers. The accelerations obtained in suddenly pulling out of a dive with well-balanced elevators are shown to be within 3 or 4 per cent of the theoretically possible accelerations. The maximum acceleration which a pilot can withstand depends upon the length of time the acceleration is continued. It is shown that he experiences no difficulty under the instantaneous accelerations as high as 7.8 G., but when under accelerations in excess of 4.5 G., continued for several seconds, he quickly loses his faculties.

  20. Theoretical Investigations of Plasma-Based Accelerators and Other Advanced Accelerator Concepts

    International Nuclear Information System (INIS)

    Shuets, G.

    2004-01-01

    Theoretical investigations of plasma-based accelerators and other advanced accelerator concepts. The focus of the work was on the development of plasma based and structure based accelerating concepts, including laser-plasma, plasma channel, and microwave driven plasma accelerators

  1. submitter Prospects of Sterile Neutrino Search with the FCC-ee

    CERN Document Server

    Bay Nielsen, Sissel

    A proposed future circular e + e − collider, the FCC-ee, is suggested to search for sterile neutrinos. The Neutrino Minimal Standard Model, νMSM, is a model of sterile neutrinos, that accommodates explanations for several phenomena of physics beyond the Standard Model. This thesis presents an overview of the theoretical motivation for νMSM, an outline of the experimental conditions at the FCC-ee, and a review of previous accelerator bounds for sterile neutrinos. Two studies of sterile neutrinos with masses at the electroweak scale are introduced, an analysis of long lived sterile neutrinos, and an analysis of short lived sterile neutrinos. Both analyses include background studies and sensitivity estimates for the FCC-ee detector. The study of long lived sterile neutrinos is based on a search for detectable displaced vertices with 1012 Z decays, obtaining a search reach on the mixing angle |θ| 2 as small as 10−11. The study of short lived sterile neutrinos is a Monte Carlo study with a cut-based analysi...

  2. Proposal to Search for Heavy Neutral Leptons at the SPS

    CERN Document Server

    Bonivento, W.; Dijkstra, H.; Egede, U.; Ferro-Luzzi, M.; Goddard, B.; Golutvin, A.; Gorbunov, D.; Jacobsson, R.; Panman, J.; Patel, M.; Ruchayskiy, O.; Ruf, T.; Serra, N.; Shaposhnikov, M.; Treille, D.; CERN. Geneva. SPS and PS Experiments Committee; SPSC

    2013-01-01

    A new fixed-target experiment at the CERN SPS accelerator is proposed that will use decays of charm mesons to search for Heavy Neutral Leptons (HNLs), which are right-handed partners of the Standard Model neutrinos. The existence of such particles is strongly motivated by theory, as they can simultaneously explain the baryon asymmetry of the Universe, account for the pattern of neutrino masses and oscillations and provide a Dark Matter candidate. Cosmological constraints on the properties of HNLs now indicate that the majority of the interesting parameter space for such particles was beyond the reach of the previous searches at the PS191, BEBC, CHARM, CCFR and NuTeV experiments. For HNLs with mass below 2 GeV, the proposed experiment will improve on the sensitivity of previous searches by four orders of magnitude and will cover a major fraction of the parameter space favoured by theoretical models. The experiment requires a 400 GeV proton beam from the SPS with a total of 2x10^20 protons on target, achie...

  3. CUDAMPF: a multi-tiered parallel framework for accelerating protein sequence search in HMMER on CUDA-enabled GPU.

    Science.gov (United States)

    Jiang, Hanyu; Ganesan, Narayan

    2016-02-27

    HMMER software suite is widely used for analysis of homologous protein and nucleotide sequences with high sensitivity. The latest version of hmmsearch in HMMER 3.x, utilizes heuristic-pipeline which consists of MSV/SSV (Multiple/Single ungapped Segment Viterbi) stage, P7Viterbi stage and the Forward scoring stage to accelerate homology detection. Since the latest version is highly optimized for performance on modern multi-core CPUs with SSE capabilities, only a few acceleration attempts report speedup. However, the most compute intensive tasks within the pipeline (viz., MSV/SSV and P7Viterbi stages) still stand to benefit from the computational capabilities of massively parallel processors. A Multi-Tiered Parallel Framework (CUDAMPF) implemented on CUDA-enabled GPUs presented here, offers a finer-grained parallelism for MSV/SSV and Viterbi algorithms. We couple SIMT (Single Instruction Multiple Threads) mechanism with SIMD (Single Instructions Multiple Data) video instructions with warp-synchronism to achieve high-throughput processing and eliminate thread idling. We also propose a hardware-aware optimal allocation scheme of scarce resources like on-chip memory and caches in order to boost performance and scalability of CUDAMPF. In addition, runtime compilation via NVRTC available with CUDA 7.0 is incorporated into the presented framework that not only helps unroll innermost loop to yield upto 2 to 3-fold speedup than static compilation but also enables dynamic loading and switching of kernels depending on the query model size, in order to achieve optimal performance. CUDAMPF is designed as a hardware-aware parallel framework for accelerating computational hotspots within the hmmsearch pipeline as well as other sequence alignment applications. It achieves significant speedup by exploiting hierarchical parallelism on single GPU and takes full advantage of limited resources based on their own performance features. In addition to exceeding performance of other

  4. Accelerated magnetic resonance diffusion tensor imaging of the median nerve using simultaneous multi-slice echo planar imaging with blipped CAIPIRINHA.

    Science.gov (United States)

    Filli, Lukas; Piccirelli, Marco; Kenkel, David; Boss, Andreas; Manoliu, Andrei; Andreisek, Gustav; Bhat, Himanshu; Runge, Val M; Guggenberger, Roman

    2016-06-01

    To investigate the feasibility of MR diffusion tensor imaging (DTI) of the median nerve using simultaneous multi-slice echo planar imaging (EPI) with blipped CAIPIRINHA. After federal ethics board approval, MR imaging of the median nerves of eight healthy volunteers (mean age, 29.4 years; range, 25-32) was performed at 3 T using a 16-channel hand/wrist coil. An EPI sequence (b-value, 1,000 s/mm(2); 20 gradient directions) was acquired without acceleration as well as with twofold and threefold slice acceleration. Fractional anisotropy (FA), mean diffusivity (MD) and quality of nerve tractography (number of tracks, average track length, track homogeneity, anatomical accuracy) were compared between the acquisitions using multivariate ANOVA and the Kruskal-Wallis test. Acquisition time was 6:08 min for standard DTI, 3:38 min for twofold and 2:31 min for threefold acceleration. No differences were found regarding FA (standard DTI: 0.620 ± 0.058; twofold acceleration: 0.642 ± 0.058; threefold acceleration: 0.644 ± 0.061; p ≥ 0.217) and MD (standard DTI: 1.076 ± 0.080 mm(2)/s; twofold acceleration: 1.016 ± 0.123 mm(2)/s; threefold acceleration: 0.979 ± 0.153 mm(2)/s; p ≥ 0.074). Twofold acceleration yielded similar tractography quality compared to standard DTI (p > 0.05). With threefold acceleration, however, average track length and track homogeneity decreased (p = 0.004-0.021). Accelerated DTI of the median nerve is feasible. Twofold acceleration yields similar results to standard DTI. • Standard DTI of the median nerve is limited by its long acquisition time. • Simultaneous multi-slice acquisition is a new technique for accelerated DTI. • Accelerated DTI of the median nerve yields similar results to standard DTI.

  5. Large tandem accelerators

    International Nuclear Information System (INIS)

    Jones, C.M.

    1976-01-01

    The increasing importance of energetic heavy ion beams in the study of atomic physics, nuclear physics, and materials science has partially or wholly motivated the construction of a new generation of tandem accelerators designed to operate at maximum terminal potentials in the range 14 to 30 MV. In addition, a number of older tandem accelerators are now being significantly upgraded to improve their heavy ion performance. Both of these developments have reemphasized the importance of negative heavy ion sources. The new large tandem accelerators are described, and the requirements placed on negative heavy ion source technology by these and other tandem accelerators used for the acceleration of heavy ions are discussed. First, a brief description is given of the large tandem accelerators which have been completed recently, are under construction, or are funded for construction, second, the motivation for construction of these accelerators is discussed, and last, criteria for negative ion sources for use with these accelerators are presented

  6. Searching for uranium

    International Nuclear Information System (INIS)

    Spaargaren, F.A.

    1988-01-01

    In the not-so-distant past, the search for uranium usually followed a conceptual approach in which an unexplored terrain was selected because of its presumed similarities with one that is known to contain one or more deposits. A description, in general terms, is given of the methodology adopted during the different stages of the exploration programme, up to the point of a discovery. Three case histories prove that, in order to reach this point, a certain amount of improvisation and luck is usually required. (author)

  7. An advanced search engine for patent analytics in medicinal chemistry.

    Science.gov (United States)

    Pasche, Emilie; Gobeill, Julien; Teodoro, Douglas; Gaudinat, Arnaud; Vishnykova, Dina; Lovis, Christian; Ruch, Patrick

    2012-01-01

    Patent collections contain an important amount of medical-related knowledge, but existing tools were reported to lack of useful functionalities. We present here the development of TWINC, an advanced search engine dedicated to patent retrieval in the domain of health and life sciences. Our tool embeds two search modes: an ad hoc search to retrieve relevant patents given a short query and a related patent search to retrieve similar patents given a patent. Both search modes rely on tuning experiments performed during several patent retrieval competitions. Moreover, TWINC is enhanced with interactive modules, such as chemical query expansion, which is of prior importance to cope with various ways of naming biomedical entities. While the related patent search showed promising performances, the ad-hoc search resulted in fairly contrasted results. Nonetheless, TWINC performed well during the Chemathlon task of the PatOlympics competition and experts appreciated its usability.

  8. Electron bulk acceleration and thermalization at Earth's quasi-perpendicular bow shock

    Science.gov (United States)

    Chen, L.-J.; Wang, S.; Wilson, L. B., III; Schwartz, S. J.; Bessho, N.; Moore, T. E.; Gershman, D. J.; Giles, B. L.; Malaspina, D. M.; Wilder, F. D.; Ergun, R. E.; Hesse, M.; Lai, H.; Russell, C. T.; Strangeway, R. J.; Torbert, R. B.; Vinas, A. F.-; Burch, J. L.; Lee, S.; Pollock, C.; Dorelli, J.; Paterson, W. R.; Ahmadi, N.; Goodrich, K. A.; Lavraud, B.; Le Contel, O.; Khotyaintsev, Yu. V.; Lindqvist, P.-A.; Boardsen, S.; Wei, H.; Le, A.; Avanov, L. A.

    2018-05-01

    Electron heating at Earth's quasiperpendicular bow shock has been surmised to be due to the combined effects of a quasistatic electric potential and scattering through wave-particle interaction. Here we report the observation of electron distribution functions indicating a new electron heating process occurring at the leading edge of the shock front. Incident solar wind electrons are accelerated parallel to the magnetic field toward downstream, reaching an electron-ion relative drift speed exceeding the electron thermal speed. The bulk acceleration is associated with an electric field pulse embedded in a whistler-mode wave. The high electron-ion relative drift is relaxed primarily through a nonlinear current-driven instability. The relaxed distributions contain a beam traveling toward the shock as a remnant of the accelerated electrons. Similar distribution functions prevail throughout the shock transition layer, suggesting that the observed acceleration and thermalization is essential to the cross-shock electron heating.

  9. Plasma particle accelerators

    International Nuclear Information System (INIS)

    Dawson, J.M.

    1988-01-01

    The Superconducting Supercollider (SSC) will require an 87-kilometer accelerator ring to boost particles to 40 TeV. The SSC's size is due in part to the fact that its operating principle is the same one that has dominated accelerator design for 50 years: it guides particles by means of magnetic fields and propels them by strong electric fields. If one were to build an equally powerful but smaller accelerator, one would need to increase the strength of the guiding and propelling fields. Actually, however, conventional technology may not be able to provide significant increases in field strength. There are two reasons. First, the forces from magnetic fields are becoming greater than the structural forces that hold a magnetic material together; the magnets that produce these fields would themselves be torn apart. Second, the energy from electric fields is reaching the energies that bind electrons to atoms; it would tear electrons from nuclei in the accelerator's support structures. It is the electric field problem that plasma accelerators can overcome. Plasma particle accelerators are based on the principle that particles can be accelerated by the electric fields generated within a plasma. Because the plasma has already been ionized, plasma particle accelerators are not susceptible to electron dissociation. They can in theory sustain accelerating fields thousands of times stronger that conventional technologies. So far two methods for creating plasma waves for accelerators have been proposed and tested: the wakefield and the beat wave. Although promising electric fields have been produced, more research is necessary to determine whether plasma particle accelerators can compete with the existing accelerators. 7 figs

  10. Searches for magnetic monopoles with IceCube

    Science.gov (United States)

    Pollmann, Anna

    2018-01-01

    Particles that carry a magnetic monopole charge are proposed by various theories which go beyond the Standard Model of particle physics. The expected mass of magnetic monopoles varies depending on the theory describing its origin, generally the monopole mass far exceeds those which can be created at accelerators. Magnetic monopoles gain kinetic energy in large scale galactic magnetic fields and, depending on their mass, can obtain relativistic velocities. IceCube is a high energy neutrino detector using the clear ice at the South Pole as a detection medium. As monopoles pass through this ice they produce optical light by a variety of mechanisms. With increasing velocity, they produce light by catalysis of baryon decay, luminescence in the ice associated with electronic excitations, indirect and direct Cherenkov light from the monopole track, and Cherenkov light from cascades induced by pair creation and photonuclear reactions. By searching for this light, current best limits for the monopole flux over a broad range of velocities was achieved using the IceCube detector. A review of these magnetic monopole searches is presented.

  11. High Energy Accelerator and Colliding Beam User Group: Progress report, March 1, 1988--February 28, 1989

    International Nuclear Information System (INIS)

    1988-09-01

    This report discusses work carried out by the High Energy Accelerator and Colliding Beam User Group at the University of Maryland. Particular topics discussed are: OPAL experiment at LEP; deep inelastic muon interactions; B physics with the CLEO detector at CESR; further results from JADE; and search for ''small'' violation of the Pauli principle

  12. Molecular ion acceleration using tandem accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Saito, Yuichi; Mizuhashi, Kiyoshi; Tajima, Satoshi [Japan Atomic Energy Research Inst., Takasaki, Gunma (Japan). Takasaki Radiation Chemistry Research Establishment

    1996-12-01

    In TIARA compound beam radiation system, cluster beams have been produced using 3 MV tandem accelerator (9SDH-2) to supply them to various radiation on injection experiments. Till now, productions of C{sub 2-8}, Si{sub 2-4} and O{sub 2} and their accelerations up to 6 MeV have been succeeded. This study aimed at production and acceleration of B{sub 2-4} and LiF. Anion clusters were produced using the conventional ion source of cesium sputter type. The proportions of atoms, molecules and clusters elicited from the ion source were varied depending on the material`s properties and the operating conditions of ion source such as sample temperature, sputter voltage and the shape of sample. The anion clusters were accelerated toward the high voltage terminal in the center of tandem accelerator, leading to cations through losing their electrons by the collision to N{sub 2} gas in a charge conversion cell at the terminal. Positively charged cluster ions could be obtained by modulating the pressure of N{sub 2} gas. Thus, B{sub 2} (64 nA), B{sub 3} (4.4 nA) and B{sub 4} (2.7 nA) have been produced and their maximum survival probabilities were higher than those of carbon or silicon clusters. In addition, the relationship between beam current and gas pressure was investigated for Bn (n = 2-4) and LiF. (M.N.)

  13. TeV/m Nano-Accelerator: Current Status of CNT-Channeling Acceleration Experiment

    Energy Technology Data Exchange (ETDEWEB)

    Shin, Young Min [Northern Illinois U.; Lumpkin, Alex H. [Fermilab; Thangaraj, Jayakar Charles [Fermilab; Thurman-Keup, Randy Michael [Fermilab; Shiltsev, Vladimir D. [Fermilab

    2014-09-17

    Crystal channeling technology has offered various opportunities in the accelerator community with a viability of ultrahigh gradient (TV/m) acceleration for future HEP collider. The major challenge of channeling acceleration is that ultimate acceleration gradients might require a high power driver in the hard x-ray regime (~ 40 keV). This x-ray energy exceeds those for x-rays as of today, although x-ray lasers can efficiently excite solid plasma and accelerate particles inside a crystal channel. Moreover, only disposable crystal accelerators are possible at such high externally excited fields which would exceed the ionization thresholds destroying the atomic structure, so acceleration will take place only in a short time before full dissociation of the lattice. Carbon-based nanostructures have great potential with a wide range of flexibility and superior physical strength, which can be applied to channeling acceleration. This paper presents a beam- driven channeling acceleration concept with CNTs and discusses feasible experiments with the Advanced Superconducting Test Accelerator (ASTA) in Fermilab.

  14. Observation of Self-Similar Behavior of the 3D, Nonlinear Rayleigh-Taylor Instability

    International Nuclear Information System (INIS)

    Sadot, O.; Smalyuk, V.A.; Delettrez, J.A.; Sangster, T.C.; Goncharov, V.N.; Meyerhofer, D.D.; Betti, R.; Shvarts, D.

    2005-01-01

    The Rayleigh-Taylor unstable growth of laser-seeded, 3D broadband perturbations was experimentally measured in the laser-accelerated, planar plastic foils. The first experimental observation showing the self-similar behavior of the bubble size and amplitude distributions under ablative conditions is presented. In the nonlinear regime, the modulation σ rms grows as α σ gt 2 , where g is the foil acceleration, t is the time, and α σ is constant. The number of bubbles evolves as N(t)∝(ωt√(g)+C) -4 and the average size evolves as (t)∝ω 2 gt 2 , where C is a constant and ω=0.83±0.1 is the measured scaled bubble-merging rate

  15. SU-E-T-512: Electromagnetic Simulations of the Dielectric Wall Accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Uselmann, A; Mackie, T [University of Wisconsin and Morgridge Institute for Research, Madison, WI (United States)

    2014-06-01

    low cost. Funding: Morgridge Institute for Research, Madison WI; Conflict of Interest: Dr. Mackie is an investor and board member at CPAC, a company developing compact accelerator designs similar to those discussed in this work, but designs discussed are not directed by CPAC. Funding: Morgridge Institute for Research, Madison WI; Conflict of Interest: Dr. Mackie is an investor and board member at CPAC, a company developing compact accelerator designs similar to those discussed in this work, but designs discussed are not directed by CPAC.

  16. Automatic Content Creation for Games to Train Students Distinguishing Similar Chinese Characters

    Science.gov (United States)

    Lai, Kwong-Hung; Leung, Howard; Tang, Jeff K. T.

    In learning Chinese, many students often have the problem of mixing up similar characters. This can cause misunderstanding and miscommunication in daily life. It is thus important for students learning the Chinese language to be able to distinguish similar characters and understand their proper usage. In this paper, we propose a game style framework in which the game content in identifying similar Chinese characters in idioms and words is created automatically. Our prior work on analyzing students’ Chinese handwriting can be applied in the similarity measure of Chinese characters. We extend this work by adding the component of radical extraction to speed up the search process. Experimental results show that the proposed method is more accurate and faster in finding more similar Chinese characters compared with the baseline method without considering the radical information.

  17. Accelerator mass spectrometry at the Rossendorf 5 MV tandem accelerator

    International Nuclear Information System (INIS)

    Friedrich, M.; Buerger, W.; Curian, H.; Hartmann, B.; Hentschel, E.; Matthes, H.; Probst, W.; Seidel, M.; Turuc, S.; Hebert, D.; Rothe, T.; Stolz, W.

    1992-01-01

    The Rossendorf electrostatic accelerators (5 MV tandem accelerator and single ended 2 MV van de Graaff accelerator) are already used for ion beam analysis. The existing methods (RBS, PIXE, ERDA, NRA, nuclear microprobe and external beam) will be completed by introduction of Accelerator Mass Spectrometry (AMS). A short description of the Rossendorf AMS system is given and first experimental results are presented. (R.P.) 4 refs.; 6 figs

  18. Truck acceleration behavior study and acceleration lane length recommendations for metered on-ramps

    Directory of Open Access Journals (Sweden)

    Guangchuan Yang

    2016-10-01

    Full Text Available This paper investigated the actual truck acceleration capability at metered on-ramps. Truck acceleration performance data were collected through a video-based data collection method. A piecewise constant acceleration model was employed to capture truck acceleration characteristics. It was found that the existing acceleration length will affect truck drivers’ acceleration behavior. At the taper type ramp that has limited acceleration distance, acceleration profile indicated a decreasing trend with distance. While for the ramp with an auxiliary lane that has sufficient acceleration distance, it was found that the acceleration behavior is to have a high acceleration rate in the beginning, then acceleration rate decrease with speed increase, and high acceleration rate again as drivers approach the merging area. Field data show that the truck acceleration performance data documented in the ITE’s (Institute of Transportation Engineers “Traffic Engineering Handbook” are much lower than the field collected data. Also, based on the regression analysis of speed versus distance profiles, it was found that the AASHTO’s (American Association of State Highway and Transportation Officials Green Book acceleration length design guidance is insufficient to accommodate trucks at metered on-ramps. The required acceleration lengths for medium and heavy trucks are approximately 1.3 and 1.6 times of the Green Book design guideline, respectively.

  19. The Hofmethode: Computing Semantic Similarities between E-Learning Products

    Directory of Open Access Journals (Sweden)

    Oliver Michel

    2009-11-01

    Full Text Available The key task in building useful e-learning repositories is to develop a system with an algorithm allowing users to retrieve information that corresponds to their specific requirements. To achieve this, products (or their verbal descriptions, i.e. presented in metadata need to be compared and structured according to the results of this comparison. Such structuring is crucial insofar as there are many search results that correspond to the entered keyword. The Hofmethode is an algorithm (based on psychological considerations to compute semantic similarities between texts and therefore offer a way to compare e-learning products. The computed similarity values are used to build semantic maps in which the products are visually arranged according to their similarities. The paper describes how the Hofmethode is implemented in the online database edulap, and how it contributes to help the user to explore the data in which he is interested.

  20. Probing electron acceleration and x-ray emission in laser-plasma accelerators

    International Nuclear Information System (INIS)

    Thaury, C.; Ta Phuoc, K.; Corde, S.; Brijesh, P.; Lambert, G.; Malka, V.; Mangles, S. P. D.; Bloom, M. S.; Kneip, S.

    2013-01-01

    While laser-plasma accelerators have demonstrated a strong potential in the acceleration of electrons up to giga-electronvolt energies, few experimental tools for studying the acceleration physics have been developed. In this paper, we demonstrate a method for probing the acceleration process. A second laser beam, propagating perpendicular to the main beam, is focused on the gas jet few nanosecond before the main beam creates the accelerating plasma wave. This second beam is intense enough to ionize the gas and form a density depletion, which will locally inhibit the acceleration. The position of the density depletion is scanned along the interaction length to probe the electron injection and acceleration, and the betatron X-ray emission. To illustrate the potential of the method, the variation of the injection position with the plasma density is studied

  1. Semantic Similarity between Web Documents Using Ontology

    Science.gov (United States)

    Chahal, Poonam; Singh Tomer, Manjeet; Kumar, Suresh

    2018-06-01

    The World Wide Web is the source of information available in the structure of interlinked web pages. However, the procedure of extracting significant information with the assistance of search engine is incredibly critical. This is for the reason that web information is written mainly by using natural language, and further available to individual human. Several efforts have been made in semantic similarity computation between documents using words, concepts and concepts relationship but still the outcome available are not as per the user requirements. This paper proposes a novel technique for computation of semantic similarity between documents that not only takes concepts available in documents but also relationships that are available between the concepts. In our approach documents are being processed by making ontology of the documents using base ontology and a dictionary containing concepts records. Each such record is made up of the probable words which represents a given concept. Finally, document ontology's are compared to find their semantic similarity by taking the relationships among concepts. Relevant concepts and relations between the concepts have been explored by capturing author and user intention. The proposed semantic analysis technique provides improved results as compared to the existing techniques.

  2. Semantic Similarity between Web Documents Using Ontology

    Science.gov (United States)

    Chahal, Poonam; Singh Tomer, Manjeet; Kumar, Suresh

    2018-03-01

    The World Wide Web is the source of information available in the structure of interlinked web pages. However, the procedure of extracting significant information with the assistance of search engine is incredibly critical. This is for the reason that web information is written mainly by using natural language, and further available to individual human. Several efforts have been made in semantic similarity computation between documents using words, concepts and concepts relationship but still the outcome available are not as per the user requirements. This paper proposes a novel technique for computation of semantic similarity between documents that not only takes concepts available in documents but also relationships that are available between the concepts. In our approach documents are being processed by making ontology of the documents using base ontology and a dictionary containing concepts records. Each such record is made up of the probable words which represents a given concept. Finally, document ontology's are compared to find their semantic similarity by taking the relationships among concepts. Relevant concepts and relations between the concepts have been explored by capturing author and user intention. The proposed semantic analysis technique provides improved results as compared to the existing techniques.

  3. An accelerated test method for efflorescence in clay bricks

    International Nuclear Information System (INIS)

    Beggan, John Edward

    1998-01-01

    An investigation into the creation of accelerated efflorescence in clay bricks was undertaken with a view to creating a viable test procedure for determining efflorescence potential. The testing programme incorporated ambient conditions similar to those which promote efflorescence growth in bricks in use. Theoretical investigations into the physical mechanism underlying the creation of efflorescence directed the attempts to accelerate the process. It was found that calcium sulphate efflorescence could not be sufficiently accelerated such that a useful efflorescence test procedure could be proposed. The inability to produce accelerated efflorescence in brick samples was attributed to limitations associated with time dependent salt diffusion in the efflorescence mechanism. The preliminary testing that was undertaken into the creation of efflorescence prompted the use of acid assisted methods to accelerate efflorescence. The acid assisted method that was adopted to provide a possible indication of efflorescence potential relies upon the transformation of low solubility calcium to a more soluble form. The movement of the transformed salt is then induced by cyclic temperature exposure at temperatures similar to those experienced in Spring. The appearance of the transformed calcium salt on the surface of the brick specimen provides an indication of the efflorescence potential. Brick piers constructed on an exposed site and monitored over a 12 month period provided information on the validity of the acid assisted test method. The efflorescence observed on the piers correlated well with that predicted by the acid assisted test, suggesting that the new test has the potential to accurately predict the efflorescence potential of clay bricks Relationships between other properties such as air permeability, sorptivity and tensile strength were investigated such that an alternative method of predicting efflorescence could be achieved. It was found that (within the bounds of the

  4. En Route: next-generation laser-plasma-based electron accelerators

    International Nuclear Information System (INIS)

    Hidding, Bernhard

    2008-05-01

    Accelerating electrons to relativistic energies is of fundamental interest, especially in particle physics. Today's accelerator technology, however, is limited by the maximum electric fields which can be created. This thesis presents results on various mechanisms aiming at exploiting the fields in focussed laser pulses and plasma waves for electron acceleration, which can be orders of magnitude higher than with conventional accelerators. With relativistic, underdense laser-plasma-interaction, quasimonoenergetic electron bunches with energies up to ∼50 MeV and normalized emittances of the order of 5mmmrad have been generated. This was achieved by focussing the ∼80 fs, 1 J pulses of the JETI-laser at the FSU Jena to intensities of several 10 19 W=cm 2 into gas jets. The experimental observations could be explained via ''bubble acceleration'', which is based on self-injection and acceleration of electrons in a highly nonlinear breaking plasma wave. For the rst time, this bubble acceleration was achieved explicitly in the self-modulated laser wakefield regime (SMLWFA). This quasimonoenergetic SMLWFA-regime stands out by relaxing dramatically the requirements on the driving laser pulse necessary to trigger bubble acceleration. This is due to self-modulation of the laser pulse in high-density gas jets, leading to ultrashort laser pulse fragments capable of initiating bubble acceleration. Electron bunches with durations < or similar 5 fs can thus be created, which is at least an order of magnitude shorter than with conventional accelerator technology. In addition, more than one laser pulse fragment can be powerful enough to drive a bubble. Distinct double peaks have been observed in the electron spectra, indicating that two quasimonoenergetic electron bunches separated by only few tens of fs have formed. This is backed up by PIC-Simulations (Particle-in-Cell). These results underline the feasibility of the construction of small table-top accelerators, while at the

  5. QuickVina: accelerating AutoDock Vina using gradient-based heuristics for global optimization.

    Science.gov (United States)

    Handoko, Stephanus Daniel; Ouyang, Xuchang; Su, Chinh Tran To; Kwoh, Chee Keong; Ong, Yew Soon

    2012-01-01

    Predicting binding between macromolecule and small molecule is a crucial phase in the field of rational drug design. AutoDock Vina, one of the most widely used docking software released in 2009, uses an empirical scoring function to evaluate the binding affinity between the molecules and employs the iterated local search global optimizer for global optimization, achieving a significantly improved speed and better accuracy of the binding mode prediction compared its predecessor, AutoDock 4. In this paper, we propose further improvement in the local search algorithm of Vina by heuristically preventing some intermediate points from undergoing local search. Our improved version of Vina-dubbed QVina-achieved a maximum acceleration of about 25 times with the average speed-up of 8.34 times compared to the original Vina when tested on a set of 231 protein-ligand complexes while maintaining the optimal scores mostly identical. Using our heuristics, larger number of different ligands can be quickly screened against a given receptor within the same time frame.

  6. Microelectromechanical acceleration-sensing apparatus

    Science.gov (United States)

    Lee, Robb M [Albuquerque, NM; Shul, Randy J [Albuquerque, NM; Polosky, Marc A [Albuquerque, NM; Hoke, Darren A [Albuquerque, NM; Vernon, George E [Rio Rancho, NM

    2006-12-12

    An acceleration-sensing apparatus is disclosed which includes a moveable shuttle (i.e. a suspended mass) and a latch for capturing and holding the shuttle when an acceleration event is sensed above a predetermined threshold level. The acceleration-sensing apparatus provides a switch closure upon sensing the acceleration event and remains latched in place thereafter. Examples of the acceleration-sensing apparatus are provided which are responsive to an acceleration component in a single direction (i.e. a single-sided device) or to two oppositely-directed acceleration components (i.e. a dual-sided device). A two-stage acceleration-sensing apparatus is also disclosed which can sense two acceleration events separated in time. The acceleration-sensing apparatus of the present invention has applications, for example, in an automotive airbag deployment system.

  7. Channel-accelerating gap interaction and beam acceleration and transport experiments with the recirculating linear accelerator (RLA)

    International Nuclear Information System (INIS)

    Mazarakis, M.G.; Smith, D.L.; Poukey, J.W.; Wagner, J.S.; Bennett, L.F.; Olson, W.R.; Turman, B.N.; Prestwich, K.R.; Wells, J.; Struve, K.

    1992-01-01

    The lifetime of the Ion Focusing Regime (IFR) channel following the pulsing of the post-accelerating gaps is critical for open-ended low energy devices. It dictates the number of allowable beam recirculations through the gaps. In the case of a closed racetrack configuration, it is significant but not as critical, since the presence of the electron beam focuses the ions and lengthens the lifetime of the ion channel. The authors have experimentally established that pulsing an accelerating gap perturbs the IFR channel. However for the parameters studied, the lifetime is long enough to allow at least four beam recirculations in a spiral device. In addition transparent grids of cusp fields positioned upstream and downstream from the gaps prevent them from perturbing the IFR channel. Experiments were performed with and without injected electron beams. For the experiments investigating the IFR channel interaction with the accelerating gap, the injector was removed and the beam line was extended downstream and upstream from the accelerating cavity. Only the first straight section of the RLA with one accelerating cavity (ET-2) was utilized. The acceleration and transport experiments were performed utilizing two injectors: first the low energy 1.3-MV Isolated Blumlein (IB) injector and most recently the new 4-MV 20-kA injector. Beams of 6--20 kA current were produced and successfully transported and accelerated through the ET-2 post-accelerating gap. For both injectors an apertured non-immersed ion-focused foilless diode was selected among various options. It is the simplest and easiest to operate and can be adjusted to provide variable beam impedance loads to the injector. The transport efficiencies were 90% for the low energy injector and 100% for the new 4-MV injector. The beam Gaussian profile and radius (5 mm) remain the same through acceleration. Experimental results will be presented and compared with numerical simulations

  8. Accelerator and Ion Beam Tradeoffs for Studies of Warm Dense Matter

    CERN Document Server

    Barnard, John J; Callahan, Debra; Davidson, Ronald C; Friedman, Alex; Grant-Logan, B; Grisham, Larry; Lee, Edward; Lee, Richard; Olson, Craig; Rose, David; Santhanam, Parthiban; Sessler, Andrew M; Staples, John W; Tabak, Max; Welch, Dale; Wurtele, Jonathan; Yu, Simon

    2005-01-01

    One approach to heat a target to "Warm Dense Matter" conditions (similar, for example, to the interiors of giant planets or certain stages in Inertial Confinement Fusion targets), is to use intense ion beams as the heating source. By consideration of ion beam phase space constraints, both at the injector, and at the final focus, and consideration of simple equations of state, approximate conditions at a target foil may be calculated. Thus target temperature and pressure may be calculated as a function of ion mass, ion energy, pulse duration, velocity tilt, and other accelerator parameters. We examine the variation in target performance as a function of various beam and accelerator parameters, in the context of several different accelerator concepts, recently proposed for WDM studies.

  9. Accelerator reliability workshop

    International Nuclear Information System (INIS)

    Hardy, L.; Duru, Ph.; Koch, J.M.; Revol, J.L.; Van Vaerenbergh, P.; Volpe, A.M.; Clugnet, K.; Dely, A.; Goodhew, D.

    2002-01-01

    About 80 experts attended this workshop, which brought together all accelerator communities: accelerator driven systems, X-ray sources, medical and industrial accelerators, spallation sources projects (American and European), nuclear physics, etc. With newly proposed accelerator applications such as nuclear waste transmutation, replacement of nuclear power plants and others. Reliability has now become a number one priority for accelerator designers. Every part of an accelerator facility from cryogenic systems to data storage via RF systems are concerned by reliability. This aspect is now taken into account in the design/budget phase, especially for projects whose goal is to reach no more than 10 interruptions per year. This document gathers the slides but not the proceedings of the workshop

  10. Accelerator reliability workshop

    Energy Technology Data Exchange (ETDEWEB)

    Hardy, L; Duru, Ph; Koch, J M; Revol, J L; Van Vaerenbergh, P; Volpe, A M; Clugnet, K; Dely, A; Goodhew, D

    2002-07-01

    About 80 experts attended this workshop, which brought together all accelerator communities: accelerator driven systems, X-ray sources, medical and industrial accelerators, spallation sources projects (American and European), nuclear physics, etc. With newly proposed accelerator applications such as nuclear waste transmutation, replacement of nuclear power plants and others. Reliability has now become a number one priority for accelerator designers. Every part of an accelerator facility from cryogenic systems to data storage via RF systems are concerned by reliability. This aspect is now taken into account in the design/budget phase, especially for projects whose goal is to reach no more than 10 interruptions per year. This document gathers the slides but not the proceedings of the workshop.

  11. Automatic performance tuning of parallel and accelerated seismic imaging kernels

    KAUST Repository

    Haberdar, Hakan

    2014-01-01

    With the increased complexity and diversity of mainstream high performance computing systems, significant effort is required to tune parallel applications in order to achieve the best possible performance for each particular platform. This task becomes more and more challenging and requiring a larger set of skills. Automatic performance tuning is becoming a must for optimizing applications such as Reverse Time Migration (RTM) widely used in seismic imaging for oil and gas exploration. An empirical search based auto-tuning approach is applied to the MPI communication operations of the parallel isotropic and tilted transverse isotropic kernels. The application of auto-tuning using the Abstract Data and Communication Library improved the performance of the MPI communications as well as developer productivity by providing a higher level of abstraction. Keeping productivity in mind, we opted toward pragma based programming for accelerated computation on latest accelerated architectures such as GPUs using the fairly new OpenACC standard. The same auto-tuning approach is also applied to the OpenACC accelerated seismic code for optimizing the compute intensive kernel of the Reverse Time Migration application. The application of such technique resulted in an improved performance of the original code and its ability to adapt to different execution environments.

  12. Similarity and scaling laws for transient arcs in a strongly accelerating gas flow

    International Nuclear Information System (INIS)

    Blundell, R.E.; Fang, M.T.C.; Terrill, R.M.

    1995-01-01

    A high-power electric arc, such as that burning in the interrupter (usually a supersonic nozzle) of a gas-blast circuit-breaker, presents a challenging problem both to theoretical and experimental investigators. The complex non-linear nature of the governing equations and steep radial gradients of arc quantities make analytic and numerical solution of the equations extremely difficult. Experimental work is also difficult due to the extreme physical conditions encountered. It is therefore highly desirable to use similarity theory to extend the limited results available to as wide a variety of arcing conditions as possible

  13. Future accelerator technology

    International Nuclear Information System (INIS)

    Sessler, A.M.

    1986-05-01

    A general discussion is presented of the acceleration of particles. Upon this foundation is built a categorization scheme into which all accelerators can be placed. Special attention is devoted to accelerators which employ a wake-field mechanism and a restricting theorem is examined. It is shown how the theorem may be circumvented. Comments are made on various acceleration schemes

  14. A Search for universal extra dimensions in the multi-lepton channel from proton anti-proton collisions at √s = 1.8 TeV

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Chun [Yale Univ., New Haven, CT (United States)

    2005-12-01

    In this thesis we present the results of a search for Universal Extra Dimensions (UED) with compactification radius near the TeV scale in the multi-lepton channel from proton-antiproton collisions at center-of-mass energy of 1.8 TeV at the Fermi National Accelerator Laboratory. This is the first UED search in the multi-lepton channel performed at the Tevatron.

  15. Control problems in very large accelerators

    International Nuclear Information System (INIS)

    Crowley-Milling, M.C.

    1985-06-01

    There is no fundamental difference of kind in the control requirements between a small and a large accelerator since they are built of the same types of components, which individually have similar control inputs and outputs. The main difference is one of scale; the large machine has many more components of each type, and the distances involved are much greater. Both of these factors must be taken into account in determining the optimum way of carrying out the control functions. Small machines should use standard equipment and software for control as much as possible, as special developments for small quantities cannot normally be justified if all costs are taken into account. On the other hand, the very great number of devices needed for a large machine means that, if special developments can result in simplification, they may make possible an appreciable reduction in the control equipment costs. It is the purpose of this report to look at the special control problems of large accelerators, which the author shall arbitarily define as those with a length of circumference in excess of 10 km, and point out where special developments, or the adoption of developments from outside the accelerator control field, can be of assistance in minimizing the cost of the control system. Most of the first part of this report was presented as a paper to the 1985 Particle Accelerator Conference. It has now been extended to include a discussion on the special case of the controls for the SSC

  16. Optimal Target Stars in the Search for Life

    Science.gov (United States)

    Lingam, Manasvi; Loeb, Abraham

    2018-04-01

    The selection of optimal targets in the search for life represents a highly important strategic issue. In this Letter, we evaluate the benefits of searching for life around a potentially habitable planet orbiting a star of arbitrary mass relative to a similar planet around a Sun-like star. If recent physical arguments implying that the habitability of planets orbiting low-mass stars is selectively suppressed are correct, we find that planets around solar-type stars may represent the optimal targets.

  17. Accelerating Inspire

    CERN Document Server

    AUTHOR|(CDS)2266999

    2017-01-01

    CERN has been involved in the dissemination of scientific results since its early days and has continuously updated the distribution channels. Currently, Inspire hosts catalogues of articles, authors, institutions, conferences, jobs, experiments, journals and more. Successful orientation among this amount of data requires comprehensive linking between the content. Inspire has lacked a system for linking experiments and articles together based on which accelerator they were conducted at. The purpose of this project has been to create such a system. Records for 156 accelerators were created and all 2913 experiments on Inspire were given corresponding MARC tags. Records of 18404 accelerator physics related bibliographic entries were also tagged with corresponding accelerator tags. Finally, as a part of the endeavour to broaden CERN's presence on Wikipedia, existing Wikipedia articles of accelerators were updated with short descriptions and links to Inspire. In total, 86 Wikipedia articles were updated. This repo...

  18. Requirements of a proton beam accelerator for an accelerator-driven reactor

    International Nuclear Information System (INIS)

    Takahashi, H.; Zhao, Y.; Tsoupas, N.; An, Y.; Yamazaki, Y.

    1997-01-01

    When the authors first proposed an accelerator-driven reactor, the concept was opposed by physicists who had earlier used the accelerator for their physics experiments. This opposition arose because they had nuisance experiences in that the accelerator was not reliable, and very often disrupted their work as the accelerator shut down due to electric tripping. This paper discusses the requirements for the proton beam accelerator. It addresses how to solve the tripping problem and how to shape the proton beam

  19. JUELICH: COSY acceleration and cooling

    International Nuclear Information System (INIS)

    Anon.

    1993-01-01

    The COSY cooler synchrotron at the KFA Forschungszentrum Jülich, inaugurated on 1 April, is now well on its way towards precision-defined high energy beams to open new fields for Jülich physics experiments. In two important goals, on 25 May the first beam cooled by electrons circulated inside the accelerator, then on 25 July physicists succeeded in accelerating the beam from the 270 MeV/c injection momentum to 600 MeV. Shortly after, this was pushed well above 1 GeV. Throughout the tuning process the number of stored particles increased steadily, finally peaking at 1.1 x 10 11 , a value compatible with the predicted limit at the injection energy. This success was the result of a painstaking search for the optimum parameter set, the commissioning crew being acutely aware that bringing such a large machine on line was a major experiment in its own right. The 3.3 GeV/c COSY machine belongs to the new class of hadron storage and cooler synchrotrons which started with CERN's LEAR low energy antiproton ring. COSY will 'sharpen' its beams to a narrow momentum spread using both electron and stochastic cooling to control the circulating particles. In addition it will provide space for internal experiments. Both features will allow for novel experimental approaches, and more than 100 physicists are eagerly waiting for the first proton reactions in their detectors

  20. Search for $B_c \\to B_s \\pi$, $B_s \\to J/\\psi \\phi$ decay with the CDF Detector

    Energy Technology Data Exchange (ETDEWEB)

    Rogers, Edwin Lloyd [Univ. of Illinois, Urbana-Champaign, IL (United States)

    2010-01-01

    This analysis details the search for B$+\\atop{c}$ → B$0\\atop{s}$ π+, B$0\\atop{s}$ → J/ΨΦ decays, and the charge conjugate mode, using the CDF II detector at the Fermi National Accelerator Laboratory. The search is derived from a sample of 5.84 fb-1 of data from p$\\bar{p}$ collisions of √s = 1.96 TeV collected via J/Ψ trigger paths.

  1. Comparison of PubMed and Google Scholar literature searches.

    Science.gov (United States)

    Anders, Michael E; Evans, Dennis P

    2010-05-01

    Literature searches are essential to evidence-based respiratory care. To conduct literature searches, respiratory therapists rely on search engines to retrieve information, but there is a dearth of literature on the comparative efficiencies of search engines for researching clinical questions in respiratory care. To compare PubMed and Google Scholar search results for clinical topics in respiratory care to that of a benchmark. We performed literature searches with PubMed and Google Scholar, on 3 clinical topics. In PubMed we used the Clinical Queries search filter. In Google Scholar we used the search filters in the Advanced Scholar Search option. We used the reference list of a related Cochrane Collaboration evidence-based systematic review as the benchmark for each of the search results. We calculated recall (sensitivity) and precision (positive predictive value) with 2 x 2 contingency tables. We compared the results with the chi-square test of independence and Fisher's exact test. PubMed and Google Scholar had similar recall for both overall search results (71% vs 69%) and full-text results (43% vs 51%). PubMed had better precision than Google Scholar for both overall search results (13% vs 0.07%, P PubMed searches with the Clinical Queries filter are more precise than with the Advanced Scholar Search in Google Scholar for respiratory care topics. PubMed appears to be more practical to conduct efficient, valid searches for informing evidence-based patient-care protocols, for guiding the care of individual patients, and for educational purposes.

  2. SALOME: An Accelerator for the Practical Course in Accelerator Physics

    OpenAIRE

    Miltchev, Velizar; Riebesehl, Daniel; Roßbach, Jörg; Trunk, Maximilian; Stein, Oliver

    2014-01-01

    SALOME (Simple Accelerator for Learning Optics and the Manipulation of Electrons) is a short low energy linear electron accelerator built by the University of Hamburg. The goal of this project is to give the students the possibility to obtain hands-on experience with the basics of accelerator physics. In this contribution the layout of the device will be presented. The most important components of the accelerator will be discussed and an overview of the planned demonstration experiments will ...

  3. Future Accelerators Seminar in Japan

    Energy Technology Data Exchange (ETDEWEB)

    Anon.

    1984-10-15

    ICFA, the International Committee for Future Accelerators, was set up by the Particles and Fields Commission of the International Union of Pure and Applied Physics (IUPAP) in 1976. Its mandate was 'To organize workshops for the study of problems related to an international super-high energy accelerator complex (VBA) and to elaborate the framework of its construction and of its use. To organize meetings for the exchange of information on future plans of regional facilities and for the formulation of advice on joint studies and uses.' In the seven years of its existence (it first met in August 1977), ICFA has organized three workshops on the first topic — t w o on 'Possibilities and Limitations of Accelerators and Detectors' (Fermilab, 1978 and Les Diablerets, 1979) and one on 'Possibilities and Limitations for Superconducting Accelerator Magnets' (Protvino, 1981). At an ICFA meeting at Fermilab in August 1983, it was realized that the second topic had been somewhat neglected. It was therefore decided to postpone a fourth workshop scheduled at the Japanese National Laboratory for High Energy Physics (KEK) and to organize instead a Seminar on 'Future Perspectives in High Energy Physics' similar to that held in New Orleans in 1975, which had in fact led to the creation of ICFA.The Seminar (jointly hosted by the Institute of Nuclear Study of Tokyo University and KEK, with support from the Ministry of Education, Science and Culture, the Yamada Science Foundation and the Nishina Memorial Foundation) took place from 14-20 May. There were about a hundred participants, mostly senior scientists from Western and Eastern Europe, USA, USSR and Japan (including the Directors of almost all the major high energy physics Laboratories) and representatives from Australia, Canada, China, India, Mexico, South Korea and Vietnam.

  4. Future Accelerators Seminar in Japan

    International Nuclear Information System (INIS)

    Anon.

    1984-01-01

    ICFA, the International Committee for Future Accelerators, was set up by the Particles and Fields Commission of the International Union of Pure and Applied Physics (IUPAP) in 1976. Its mandate was 'To organize workshops for the study of problems related to an international super-high energy accelerator complex (VBA) and to elaborate the framework of its construction and of its use. To organize meetings for the exchange of information on future plans of regional facilities and for the formulation of advice on joint studies and uses.' In the seven years of its existence (it first met in August 1977), ICFA has organized three workshops on the first topic — t w o on 'Possibilities and Limitations of Accelerators and Detectors' (Fermilab, 1978 and Les Diablerets, 1979) and one on 'Possibilities and Limitations for Superconducting Accelerator Magnets' (Protvino, 1981). At an ICFA meeting at Fermilab in August 1983, it was realized that the second topic had been somewhat neglected. It was therefore decided to postpone a fourth workshop scheduled at the Japanese National Laboratory for High Energy Physics (KEK) and to organize instead a Seminar on 'Future Perspectives in High Energy Physics' similar to that held in New Orleans in 1975, which had in fact led to the creation of ICFA.The Seminar (jointly hosted by the Institute of Nuclear Study of Tokyo University and KEK, with support from the Ministry of Education, Science and Culture, the Yamada Science Foundation and the Nishina Memorial Foundation) took place from 14-20 May. There were about a hundred participants, mostly senior scientists from Western and Eastern Europe, USA, USSR and Japan (including the Directors of almost all the major high energy physics Laboratories) and representatives from Australia, Canada, China, India, Mexico, South Korea and Vietnam

  5. A fuzzy-match search engine for physician directories.

    Science.gov (United States)

    Rastegar-Mojarad, Majid; Kadolph, Christopher; Ye, Zhan; Wall, Daniel; Murali, Narayana; Lin, Simon

    2014-11-04

    A search engine to find physicians' information is a basic but crucial function of a health care provider's website. Inefficient search engines, which return no results or incorrect results, can lead to patient frustration and potential customer loss. A search engine that can handle misspellings and spelling variations of names is needed, as the United States (US) has culturally, racially, and ethnically diverse names. The Marshfield Clinic website provides a search engine for users to search for physicians' names. The current search engine provides an auto-completion function, but it requires an exact match. We observed that 26% of all searches yielded no results. The goal was to design a fuzzy-match algorithm to aid users in finding physicians easier and faster. Instead of an exact match search, we used a fuzzy algorithm to find similar matches for searched terms. In the algorithm, we solved three types of search engine failures: "Typographic", "Phonetic spelling variation", and "Nickname". To solve these mismatches, we used a customized Levenshtein distance calculation that incorporated Soundex coding and a lookup table of nicknames derived from US census data. Using the "Challenge Data Set of Marshfield Physician Names," we evaluated the accuracy of fuzzy-match engine-top ten (90%) and compared it with exact match (0%), Soundex (24%), Levenshtein distance (59%), and fuzzy-match engine-top one (71%). We designed, created a reference implementation, and evaluated a fuzzy-match search engine for physician directories. The open-source code is available at the codeplex website and a reference implementation is available for demonstration at the datamarsh website.

  6. The miniature accelerator

    CERN Multimedia

    Antonella Del Rosso

    2015-01-01

    The image that most people have of CERN is of its enormous accelerators and their capacity to accelerate particles to extremely high energies. But thanks to some cutting-edge studies on beam dynamics and radiofrequency technology, along with innovative construction techniques, teams at CERN have now created the first module of a brand-new accelerator, which will be just 2 metres long. The potential uses of this miniature accelerator will include deployment in hospitals for the production of medical isotopes and the treatment of cancer. It’s a real David-and-Goliath story.   Serge Mathot, in charge of the construction of the "mini-RFQ", pictured with the first of the four modules that will make up the miniature accelerator. The miniature accelerator consists of a radiofrequency quadrupole (RFQ), a component found at the start of all proton accelerator chains around the world, from the smallest to the largest. The LHC is designed to produce very high-intensity beams ...

  7. Accelerators for energy

    International Nuclear Information System (INIS)

    Inoue, Makoto

    2000-01-01

    A particle accelerator is a device to consume energy but not to produce it. Then, the titled accelerator seems to mean an accelerator for using devices related to nuclear energy. For an accelerator combined to nuclear fissionable fuel, neutron sources are D-T type, (gamma, n) reaction using electron beam type spallation type, and so forth. At viewpoints of powers of incident beam and formed neutron, a spallation type source using high energy proton is told to be effective but others have some advantages by investigation on easy operability, easy construction, combustion with target, energy and directivity of neutron, and so forth. Here were discussed on an accelerator for research on accelerator driven energy system by dividing its researching steps, and on kind, energy, beam intensity, and so forth of an accelerator suitable for it. And, space electric charge effect at beam propagation direction controlled by beam intensity of cyclotron was also commented. (G.K.)

  8. Architecture of petawatt-class z-pinch accelerators

    Directory of Open Access Journals (Sweden)

    W. A. Stygar

    2007-03-01

    Full Text Available We have developed an accelerator architecture that can serve as the basis of the design of petawatt-class z-pinch drivers. The architecture has been applied to the design of two z-pinch accelerators, each of which can be contained within a 104-m-diameter cylindrical tank. One accelerator is driven by slow (∼1   μs Marx generators, which are a mature technology but which necessitate significant pulse compression to achieve the short pulses (≪1   μs required to drive z pinches. The other is powered by linear transformer drivers (LTDs, which are less mature but produce much shorter pulses than conventional Marxes. Consequently, an LTD-driven accelerator promises to be (at a given pinch current and implosion time more efficient and reliable. The Marx-driven accelerator produces a peak electrical power of 500 TW and includes the following components: (i 300 Marx generators that comprise a total of 1.8×10^{4} capacitors, store 98 MJ, and erect to 5 MV; (ii 600 water-dielectric triplate intermediate-store transmission lines, which also serve as pulse-forming lines; (iii 600 5-MV laser-triggered gas switches; (iv three monolithic radial-transmission-line impedance transformers, with triplate geometries and exponential impedance profiles; (v a 6-level 5.5-m-diameter 15-MV vacuum insulator stack; (vi six magnetically insulated vacuum transmission lines (MITLs; and (vii a triple-post-hole vacuum convolute that adds the output currents of the six MITLs, and delivers the combined current to a z-pinch load. The accelerator delivers an effective peak current of 52 MA to a 10-mm-length z pinch that implodes in 95 ns, and 57 MA to a pinch that implodes in 120 ns. The LTD-driven accelerator includes monolithic radial transformers and a MITL system similar to those described above, but does not include intermediate-store transmission lines, multimegavolt gas switches, or a laser trigger system. Instead, this accelerator is driven by 210

  9. Real-time earthquake monitoring using a search engine method.

    Science.gov (United States)

    Zhang, Jie; Zhang, Haijiang; Chen, Enhong; Zheng, Yi; Kuang, Wenhuan; Zhang, Xiong

    2014-12-04

    When an earthquake occurs, seismologists want to use recorded seismograms to infer its location, magnitude and source-focal mechanism as quickly as possible. If such information could be determined immediately, timely evacuations and emergency actions could be undertaken to mitigate earthquake damage. Current advanced methods can report the initial location and magnitude of an earthquake within a few seconds, but estimating the source-focal mechanism may require minutes to hours. Here we present an earthquake search engine, similar to a web search engine, that we developed by applying a computer fast search method to a large seismogram database to find waveforms that best fit the input data. Our method is several thousand times faster than an exact search. For an Mw 5.9 earthquake on 8 March 2012 in Xinjiang, China, the search engine can infer the earthquake's parameters in <1 s after receiving the long-period surface wave data.

  10. A product feature-based user-centric product search model

    OpenAIRE

    Ben Jabeur, Lamjed; Soulier, Laure; Tamine, Lynda; Mousset, Paul

    2016-01-01

    During the online shopping process, users would search for interesting products and quickly access those that fit with their needs among a long tail of similar or closely related products. Our contribution addresses head queries that are frequently submitted on e-commerce Web sites. Head queries usually target featured products with several variations, accessories, and complementary products. We present in this paper a product feature-based user-centric model for product search involving in a...

  11. Analysis of flame acceleration in open or vented obstructed pipes

    Science.gov (United States)

    Bychkov, Vitaly; Sadek, Jad; Akkerman, V'yacheslav

    2017-01-01

    While flame propagation through obstacles is often associated with turbulence and/or shocks, Bychkov et al. [V. Bychkov et al., Phys. Rev. Lett. 101, 164501 (2008), 10.1103/PhysRevLett.101.164501] have revealed a shockless, conceptually laminar mechanism of extremely fast flame acceleration in semiopen obstructed pipes (one end of a pipe is closed; a flame is ignited at the closed end and propagates towards the open one). The acceleration is devoted to a powerful jet flow produced by delayed combustion in the spaces between the obstacles, with turbulence playing only a supplementary role in this process. In the present work, this formulation is extended to pipes with both ends open in order to describe the recent experiments and modeling by Yanez et al. [J. Yanez et al., arXiv:1208.6453] as well as the simulations by Middha and Hansen [P. Middha and O. R. Hansen, Process Safety Prog. 27, 192 (2008) 10.1002/prs.10242]. It is demonstrated that flames accelerate strongly in open or vented obstructed pipes and the acceleration mechanism is similar to that in semiopen ones (shockless and laminar), although acceleration is weaker in open pipes. Starting with an inviscid approximation, we subsequently incorporate hydraulic resistance (viscous forces) into the analysis for the sake of comparing its role to that of a jet flow driving acceleration. It is shown that hydraulic resistance is actually not required to drive flame acceleration. In contrast, this is a supplementary effect, which moderates acceleration. On the other hand, viscous forces are nevertheless an important effect because they are responsible for the initial delay occurring before the flame acceleration onset, which is observed in the experiments and simulations. Accounting for this effect provides good agreement between the experiments, modeling, and the present theory.

  12. Electrostatic accelerators

    OpenAIRE

    Hinterberger, F

    2006-01-01

    The principle of electrostatic accelerators is presented. We consider Cockcroft– Walton, Van de Graaff and Tandem Van de Graaff accelerators. We resume high voltage generators such as cascade generators, Van de Graaff band generators, Pelletron generators, Laddertron generators and Dynamitron generators. The speci c features of accelerating tubes, ion optics and methods of voltage stabilization are described. We discuss the characteristic beam properties and the variety of possible beams. We ...

  13. Superconducting accelerator technology

    International Nuclear Information System (INIS)

    Grunder, H.A.; Hartline, B.K.

    1986-01-01

    Modern and future accelerators for high energy and nuclear physics rely increasingly on superconducting components to achieve the required magnetic fields and accelerating fields. This paper presents a practical overview of the phenomenon of superconductivity, and describes the design issues and solutions associated with superconducting magnets and superconducting rf acceleration structures. Further development and application of superconducting components promises increased accelerator performance at reduced electric power cost

  14. Sector ring accelerator ''RESATRON''

    International Nuclear Information System (INIS)

    Schwabe, E.

    1980-01-01

    Project of sector ring accelerator RESATRON is described. The curiosity of this accelerator is the second cycle of acceleration of the beam after stripping it on the foil. In such an accelerator heavy ions with a different ratio Z to A can be accelerated. (S.B.)

  15. Summary talk - an accelerator for other projects

    International Nuclear Information System (INIS)

    Laclare, J.L.

    2001-01-01

    Over the past few years, great consideration was given to the feasibility of a new generation of high intensity proton linear accelerators capable of delivering several tens of MW of beam power. Many scientific applications could benefit from such a development: 1) hybrid reactors and transmutation of nuclear waste, 2) muon and neutrino factories, 3) irradiation tools, 4) spallation neutron source for material studies, 5) radioactive nuclear beams, and 6) radioisotopes. Deciding on priorities is more difficult than in the past and competition is extremely strong. A possible solution could be to look for possible synergies between these projects and to develop multi-purpose facilities whenever the applications are compatible, so as to maximize scientific outcome while minimising costs. This paper intends to identify large similarities in terms of accelerator requirements and potential synergies for the 6 applications listed above

  16. Stochastic acceleration of electrons from multiple uncorrelated plasma waves

    Science.gov (United States)

    Gee, David; Michel, Pierre; Wurtele, Jonathan

    2017-10-01

    One-dimensional theory puts a strict limit on the maximum energy attainable by an electron trapped and accelerated by an electron plasma wave (EPW). However, experimental measurements of hot electron distributions accelerated by stimulated Raman scattering (SRS) in ICF experiments typically show a thermal distribution with temperatures of the order of the kinetic energy of the resonant EPW's (Thot mvp2 , where vp is the phase velocity of the EPW's driven by SRS) and no clear cutoff at high energies. In this project, we are investigating conditions under which electrons can be stochastically accelerated by multiple uncorrelated EPW's, such as those generated by incoherent laser speckles in large laser spots like the ones used on NIF ( mm-size), and reproduce distributions similar to those observed in experiments. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344.

  17. High Precision Survey and Alignment of Large Linear Accelerators

    CERN Document Server

    Prenting, J

    2004-01-01

    For the future linear accelerator TESLA the demanded accuracy for the alignment of the components is 0.5 mm horizontal and 0.2 mm vertical, both on each 600 m section. Other accelerators require similar accuracies. These demands can not be fulfilled with open-air geodetic methods, mainly because of refraction. Therefore the RTRS (Rapid Tunnel Reference Surveyor), a measurement train performing overlapping multipoint alignment on a reference network is being developed. Two refraction-free realizations of this concept are being developed at the moment: the first one (GeLiS) measures the horizontal co-ordinates using stretched wires, combined with photogrammetric split-image sensors in a distance measurement configuration. In areas of the tunnel where the accelerator is following the earth curvature GeLiS measures the height using a new hydrostatic leveling system. The second concept (LiCAS) is based on laser straightness monitors (LSM) combined with frequency scanning interferometry (FSI) in an evacuated system...

  18. 2014 Joint International Accelerator School: Beam Loss and Accelerator Protection

    CERN Document Server

    JAS - Joint US-CERN-Japan-Russia Accelerator School

    2016-01-01

    Many particle accelerators operate with very high beam power and very high energy stored in particle beams as well as in magnet systems. In the future, the beam power in high intensity accelerators will further increase. The protection of the accelerator equipment from the consequences of uncontrolled release of the energy is essential. This was the motivation for organizing a first school on beam losses and accelerator protection (in general referred to as machine protection). During the school the methods and technologies to identify, mitigate, monitor and manage the technical risks associated with the operation of accelerators with high-power beams or subsystems with large stored energy were presented. At the completion of the school the participants should have been able to understand the physical phenomena that can damage machine subsystems or interrupt operations and to analyze an accelerator facility to produce a register of technical risks and the corresponding risk mitigation and management strategie...

  19. Categorization and Searching of Color Images Using Mean Shift Algorithm

    Directory of Open Access Journals (Sweden)

    Prakash PANDEY

    2009-07-01

    Full Text Available Now a day’s Image Searching is still a challenging problem in content based image retrieval (CBIR system. Most CBIR system operates on all images without pre-sorting the images. The image search result contains many unrelated image. The aim of this research is to propose a new object based indexing system Based on extracting salient region representative from the image, categorizing the image into different types and search images that are similar to given query images.In our approach, the color features are extracted using the mean shift algorithm, a robust clustering technique, Dominant objects are obtained by performing region grouping of segmented thumbnails. The category for an image is generated automatically by analyzing the image for the presence of a dominant object. The images in the database are clustered based on region feature similarity using Euclidian distance. Placing an image into a category can help the user to navigate retrieval results more effectively. Extensive experimental results illustrate excellent performance.

  20. Linear Accelerators

    International Nuclear Information System (INIS)

    Vretenar, M

    2014-01-01

    The main features of radio-frequency linear accelerators are introduced, reviewing the different types of accelerating structures and presenting the main characteristics aspects of linac beam dynamics