Comparing data accuracy between structured abstracts and full-text journal articles: implications in their use for informing clinical decisions.

Science.gov (United States)

Fontelo, Paul; Gavino, Alex; Sarmiento, Raymond Francis

2013-12-01

The abstract is the most frequently read section of a research article. The use of 'Consensus Abstracts', a clinician-oriented web application formatted for mobile devices to search MEDLINE/PubMed, for informing clinical decisions was proposed recently; however, inaccuracies between abstracts and the full-text article have been shown. Efforts have been made to improve quality. We compared data in 60 recent-structured abstracts and full-text articles from six highly read medical journals. Data inaccuracies were identified and then classified as either clinically significant or not significant. Data inaccuracies were observed in 53.33% of articles ranging from 3.33% to 45% based on the IMRAD format sections. The Results section showed the highest discrepancies (45%) although these were deemed to be mostly not significant clinically except in one. The two most common discrepancies were mismatched numbers or percentages (11.67%) and numerical data or calculations found in structured abstracts but not mentioned in the full text (40%). There was no significant relationship between journals and the presence of discrepancies (Fisher's exact p value =0.3405). Although we found a high percentage of inaccuracy between structured abstracts and full-text articles, these were not significant clinically. The inaccuracies do not seem to affect the conclusion and interpretation overall. Structured abstracts appear to be informative and may be useful to practitioners as a resource for guiding clinical decisions.

Full-text publication of abstracts presented at meetings of a Latin American scientific society.

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Dicembrino, Manuela; Anderson, Mariana; Vely, Ana Gabriela; Ossorio, María Fabiana; Ferrero, Fernando

2014-12-01

To estimate the proportion of abstracts presented at meetings of the Latin American Society for Pediatric Research that are fully-published, to describe the reasons for not publishing papers, and to assess the impact of funding on the publication rate. Abstracts presented at meetings held between 2005 and 2009 were included. Authors were contacted and invited to take a survey on the publication of their work or the reasons not to do it. Information was collected on 232 (71.4%) of the 325 abstracts presented. Of these, 58.6% were fully-published (136/232). Funded studies (40.0%) had more chances of publication (OR: 2.2; 95% CI: 1.2-3.9). "Lack of time" was the most common reason for failure to publish (35/96). 58.6% of abstracts presented at meetings of the Latin American Society for Pediatric Research, were published as full-text articles; lack of time was the most common reason for failure to publish. Funded research had more chances of being published.

Commercial Database Design vs. Library Terminology Comprehension: Why Do Students Print Abstracts Instead of Full-Text Articles?

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Imler, Bonnie; Eichelberger, Michelle

2014-01-01

When asked to print the full text of an article, many undergraduate college students print the abstract instead of the full text. This study seeks to determine the underlying cause(s) of this confusion. In this quantitative study, participants (n = 40) performed five usability tasks to assess ease of use and usefulness of five commercial library…

Discrepancies between Abstracts Presented at International Association for Dental Research Annual Sessions from 2004 to 2005 and Full-Text Publication.

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Prasad, Soni; Lee, Damian J; Yuan, Judy Chia-Chun; Barao, Valentim A R; Shyamsunder, Nodesh; Sukotjo, Cortino

2012-01-01

Purpose. The purpose of this study was to evaluate the discrepancies between abstracts presented at the IADR meeting (2004-2005) and their full-text publication. Material and Methods. Abstracts from the Prosthodontic Section of IADR meeting were obtained. The following information was collected: abstract title, number of authors, study design, statistical analysis, outcome, and funding source. PubMed was used to identify the full-text publication of the abstracts. The discrepancies between the abstract and the full-text publication were examined, categorized as major and minor discrepancies, and quantified. The data were collected and analyzed using descriptive analysis. Frequency and percentage of major and minor discrepancies were calculated. Results. A total of 109 (95.6%) articles showed changes from their abstracts. Seventy-four (65.0%) and 105 (92.0%) publications had at least one major and one minor discrepancies, respectively. Minor discrepancies were more prevalent (92.0%) than major discrepancies (65.0%). The most common minor discrepancy was observed in the title (80.7%), and most common major discrepancies were seen in results (48.2%). Conclusion. Minor discrepancies were more prevalent than major discrepancies. The data presented in this study may be useful to establish a more comprehensive structured abstract requirement for future meetings.

Full text publication rates of research abstracts presented at the European Society of Endodontology (ESE) Congresses in the last 20 years.

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Tzanetakis, G N; Tzimpoulas, N; Floratos, S; Agrafioti, A; Kontakiotis, E G; Shemesh, H

2017-06-26

To evaluate the full-text publication rates of scientific research abstracts presented at the European Society of Endodontology (ESE) Congresses held between 1993 and 2013 (a total of 11 occasions) and to determine factors associated with the manuscripts. An electronic database search was conducted from January 2015 to December 2016 to identify full text English written publications of the research abstracts presented at the last 11 ESE Biennial Congresses from 1993 to 2013. For each occasion, research abstract information were retrieved from the International Endodontic Journal (IEJ) through the official website of the ESE and the following parameters for each abstract presentation were recorded: Year of presentation, first author's affiliation, geographic origin, and type of study. Following full-text article identification, additional information was recorded such as: Year and journal of publication, elapsed time until full publication and number of authors per presentation and publication. A total of 1165 research abstracts were presented, of which 401 (34.4%) were finally published as full-length articles. Overall 235 articles (58.6%) were published either in the International Endodontic Journal (IEJ, 35.7%) or Journal of Endodontics (JOE, 22.9%). The mean time between abstract presentation and full-text publication was 18.95 months. Munich (2001) had the highest publication rate (44%) whereas Lisbon (2013) had the highest number of published articles (77). Turkey was the country with the highest number of published abstracts (56). However, the Netherlands was the country with the highest number of publications related to the number of presentations (21/26) (80.7%). Differences in authorship between presentation and full publication were found in 179 (44.6%) articles. A substantial number of research abstracts presented at ESE congresses were not published in peer reviewed journals. Authors prefer to publish their research papers in international journals with

Progress in the Full-Text Publication Rate of Orthopaedic and Sport Physical Therapy Abstracts Presented at the American Physical Therapy Association's Combined Sections Meeting.

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Warden, Stuart J; Fletcher, Jacquelyn M; Barker, Rick G; Guildenbecher, Elizabeth A; Gorkis, Colleen E; Thompson, William R

2017-10-07

Study Design Descriptive study. Background Professional meetings, such as the American Physical Therapy Association's (APTA's) Combined Sections Meeting (CSM), provide forums for sharing information. However, it was reported that only one-quarter of orthopaedic and sports physical therapy abstracts presented at the CSM between 2000 and 2004 went on to full-text publication. This low conversion rate raises a number of concerns regarding the full dissemination of work within the profession. Objectives The purpose of this study was to determine the full-text publication rate of work presented in abstract form at subsequent CSMs and investigate factors influencing the rate. Methods A systematic search was undertaken to locate full-text publications of orthopaedic and sports physical therapy abstracts presented at CSMs between 2005 and 2011. Eligible publications were published within 5 years following abstract presentation. The influences of year of abstract presentation, APTA section, presentation type, institution of origin, study design, and study significance were assessed. Results Over one-third (38.6%) of presented abstracts progressed to full-text publication. Odds of full-text publication increased if the abstract was presented as a platform presentation, originated from a doctorate-granting institution, reported findings of an experimental study, or reported a statistically significant finding. Conclusion The full-text publication rate for orthopaedic and sports physical therapy abstracts presented at recent CSMs has increased by over 50% compared to that reported for the preceding period. The rate is now in the range of that reported in comparable clinical disciplines, demonstrating important progress in the full dissemination of work within the profession. J Orthop Sports Phys Ther, Epub 7 Oct 2017. doi:10.2519/jospt.2018.7581.

Systematic characterizations of text similarity in full text biomedical publications.

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Sun, Zhaohui; Errami, Mounir; Long, Tara; Renard, Chris; Choradia, Nishant; Garner, Harold

2010-09-15

Computational methods have been used to find duplicate biomedical publications in MEDLINE. Full text articles are becoming increasingly available, yet the similarities among them have not been systematically studied. Here, we quantitatively investigated the full text similarity of biomedical publications in PubMed Central. 72,011 full text articles from PubMed Central (PMC) were parsed to generate three different datasets: full texts, sections, and paragraphs. Text similarity comparisons were performed on these datasets using the text similarity algorithm eTBLAST. We measured the frequency of similar text pairs and compared it among different datasets. We found that high abstract similarity can be used to predict high full text similarity with a specificity of 20.1% (95% CI [17.3%, 23.1%]) and sensitivity of 99.999%. Abstract similarity and full text similarity have a moderate correlation (Pearson correlation coefficient: -0.423) when the similarity ratio is above 0.4. Among pairs of articles in PMC, method sections are found to be the most repetitive (frequency of similar pairs, methods: 0.029, introduction: 0.0076, results: 0.0043). In contrast, among a set of manually verified duplicate articles, results are the most repetitive sections (frequency of similar pairs, results: 0.94, methods: 0.89, introduction: 0.82). Repetition of introduction and methods sections is more likely to be committed by the same authors (odds of a highly similar pair having at least one shared author, introduction: 2.31, methods: 1.83, results: 1.03). There is also significantly more similarity in pairs of review articles than in pairs containing one review and one nonreview paper (frequency of similar pairs: 0.0167 and 0.0023, respectively). While quantifying abstract similarity is an effective approach for finding duplicate citations, a comprehensive full text analysis is necessary to uncover all potential duplicate citations in the scientific literature and is helpful when

Analysis of full-text publication and publishing predictors of abstracts presented at an Italian public health meeting (2005-2007).

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Castaldi, S; Giacometti, M; Toigo, W; Bert, F; Siliquini, R

2015-09-29

In Public Health, a thorough review of abstract quality evaluations and the publication history of studies presented at scientific meetings has never been conducted. To analyse the long-term outcome of quality abstracts submitted to conferences of Italian Society of Hygiene and Public Health (SItI) from 2005 to 2007, we conducted a second analysis of previously published material aiming to estimate full-text publication rate of high quality abstract presented at Italian public health meetings, and to identify predictors of full-text publication. The search was undertaken through scientific databases and search engines and through the web sites of the major Italian journals of Public Health. For each publication confirmed as a full text paper, the journal name, impact factor, year of publication, gender of the first author, type of study design, characteristics of the results and sample size were collected. The overall publication rate of the abstracts presented is 23.5%; most of the papers were published in Public Health journals (average impact factor: 3.007). Non universitary affiliation had resulted in a lower probability of publication, while some of the Conference topics had predisposed the studies to an increased likelihood of publication as well as poster form presentation. The method presented in this study provides a good framework for the evaluation of the scientific evidence. The findings achieved should be taken into consideration by the Scientific Societies during the contributions selection phase, with the aim of achieving a continuous improvement of work quality. In the future, it would be interesting to survey the abstract authors to identify reasons for unpublished data.

An Observational Study of Abstracts Presented at the American College of Veterinary Surgeon Annual Meetings (2001-2008) and Their Subsequent Full-Text Publication.

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Meyers, Katherine E; Lindem, Margaret J; Giuffrida, Michelle A

2016-07-01

To determine the frequency of abstracts presented at American College of Veterinary Surgeons (ACVS) meetings from 2001 to 2008 that were published as complete articles, to identify abstract characteristics associated with final full-text publication, and to examine consistency of information between abstracts and final full-text publications. Observational bibliographic study. Abstracts were retrieved from published proceedings. Published articles were retrieved from bibliographic databases. Features of abstract and article authorship, design, and content were recorded. Regression analysis identified abstract features associated with article publication, and evaluated consistency between abstracts and final publications. Seven hundred eighty-two of 1078 (73%) abstracts were published as complete articles. Median time to publication was 1 year; 90% were published within 3 years. Abstracts originating from academic institutions were published more often than abstracts from practice or industry sites (odds ratio 2.61, 95% confidence interval 1.68-4.05). Compared to their conference abstracts, 49% of articles contained major inconsistences including changes in study design, interventions, outcomes, sample size, and results. For each year elapsed between presentation and publication, the odds of major inconsistency increased 2.4 times (odds ratio 2.36, 95% confidence interval 1.57-3.55) for retrospective studies and 1.4 times (odds ratio 1.35, 95% confidence interval 1.17-1.56) for other study designs. Changes in study title and authorship were frequent, particularly in publications that contained major inconsistencies. ACVS abstracts were promptly and reliably published, but final full-text publications often differed substantially from the original abstracts. © Copyright 2016 by The American College of Veterinary Surgeons.

A comparison of the accuracy of clinical decisions based on full-text articles and on journal abstracts alone: a study among residents in a tertiary care hospital.

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Marcelo, Alvin; Gavino, Alex; Isip-Tan, Iris Thiele; Apostol-Nicodemus, Leilanie; Mesa-Gaerlan, Faith Joan; Firaza, Paul Nimrod; Faustorilla, John Francis; Callaghan, Fiona M; Fontelo, Paul

2013-04-01

Many clinicians depend solely on journal abstracts to guide clinical decisions. This study aims to determine if there are differences in the accuracy of responses to simulated cases between resident physicians provided with an abstract only and those with full-text articles. It also attempts to describe their information-seeking behaviour. Seventy-seven resident physicians from four specialty departments of a tertiary care hospital completed a paper-based questionnaire with clinical simulation cases, then randomly assigned to two intervention groups-access to abstracts-only and access to both abstracts and full-text. While having access to medical literature, they completed an online version of the same questionnaire. The average improvement across departments was not significantly different between the abstracts-only group and the full-text group (p=0.44), but when accounting for an interaction between intervention and department, the effect was significant (p=0.049) with improvement greater with full-text in the surgery department. Overall, the accuracy of responses was greater after the provision of either abstracts-only or full-text (pfull-text articles were more accurate than those guided by abstracts alone, but the results seem to be driven by a significant difference in one department.

The Medline/full-text research project.

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McKinin, E J; Sievert, M; Johnson, E D; Mitchell, J A

1991-05-01

This project was designed to test the relative efficacy of index terms and full-text for the retrieval of documents in those MEDLINE journals for which full-text searching was also available. The full-text files used were MEDIS from Mead Data Central and CCML from BRS Information Technologies. One hundred clinical medical topics were searched in these two files as well as the MEDLINE file to accumulate the necessary data. It was found that full-text identified significantly more relevant articles than did the indexed file, MEDLINE. The full-text searches, however, lacked the precision of searches done in the indexed file. Most relevant items missed in the full-text files, but identified in MEDLINE, were missed because the searcher failed to account for some aspect of natural language, used a logical or positional operator that was too restrictive, or included a concept which was implied, but not expressed in the natural language. Very few of the unique relevant full-text citations would have been retrieved by title or abstract alone. Finally, as of July, 1990 the more current issue of a journal was just as likely to appear in MEDLINE as in one of the full-text files.

Selecting Full-Text Undergraduate Periodicals Databases.

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Still, Julie M.; Kassabian, Vibiana

1999-01-01

Examines how libraries and librarians can compare full-text general periodical indices, using ProQuest Direct, Periodical Abstracts (via Ovid), and EBSCOhost as examples. Explores breadth and depth of coverage; manipulation of results (email/download/print); ease of use (searching); and indexing quirks. (AEF)

Publication rates of full-text journal articles converted from abstracts presented during the 22(nd) Turkish National Urology Congress.

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Kocaaslan, Ramazan; Kayalı, Yunus; Tok, Adem; Tepeler, Abdulkadir

2016-03-01

To analyze the publication rates of full-text journal articles converted from the abstracts presented in the 22(nd) Turkish National Urology Congress in 2012. A total of 576 abstracts accepted for presentation at the 22(nd) Turkish National Urology Association Meeting were identified from the published abstract book. The abstracts were categorized into subsections such as endourology and pediatric urology. The subsequent publication rate for the studies was evaluated by scanning PubMed Medline. Abstracts published before the proceedings were excluded from the study. The abstracts were categorized as being presented orally (n=155), by poster (n=421), or by video (n=78). Of the 28 (18.3%) of 155 oral and 34 (8.15%) of 421 poster presentations, were subsequently published in several journals until March 2015. The publication rates of the abstracts based on urology subsections were as follows: neurology (25%), andrology (18.6%), endourology (17.2%), urolithiasis (15.3%), general urology (12.5%), infectious diseases (7.14%), pediatric urology (6.25%), uro-gynecology (6.06%), reconstructive urology (5.8%), and urooncology (3.8%). The average time to publication was 11.77 (0-33) months. This is the first study assessing the publication rates of abstracts presented at a Turkish National Urology Congress. It reveals that more qualified randomized studies need to be done to improve the rate of publication.

MeSH: a window into full text for document summarization.

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Bhattacharya, Sanmitra; Ha-Thuc, Viet; Srinivasan, Padmini

2011-07-01

Previous research in the biomedical text-mining domain has historically been limited to titles, abstracts and metadata available in MEDLINE records. Recent research initiatives such as TREC Genomics and BioCreAtIvE strongly point to the merits of moving beyond abstracts and into the realm of full texts. Full texts are, however, more expensive to process not only in terms of resources needed but also in terms of accuracy. Since full texts contain embellishments that elaborate, contextualize, contrast, supplement, etc., there is greater risk for false positives. Motivated by this, we explore an approach that offers a compromise between the extremes of abstracts and full texts. Specifically, we create reduced versions of full text documents that contain only important portions. In the long-term, our goal is to explore the use of such summaries for functions such as document retrieval and information extraction. Here, we focus on designing summarization strategies. In particular, we explore the use of MeSH terms, manually assigned to documents by trained annotators, as clues to select important text segments from the full text documents. Our experiments confirm the ability of our approach to pick the important text portions. Using the ROUGE measures for evaluation, we were able to achieve maximum ROUGE-1, ROUGE-2 and ROUGE-SU4 F-scores of 0.4150, 0.1435 and 0.1782, respectively, for our MeSH term-based method versus the maximum baseline scores of 0.3815, 0.1353 and 0.1428, respectively. Using a MeSH profile-based strategy, we were able to achieve maximum ROUGE F-scores of 0.4320, 0.1497 and 0.1887, respectively. Human evaluation of the baselines and our proposed strategies further corroborates the ability of our method to select important sentences from the full texts. sanmitra-bhattacharya@uiowa.edu; padmini-srinivasan@uiowa.edu.

Multilingual access to full text databases

International Nuclear Information System (INIS)

Fluhr, C.; Radwan, K.

1990-05-01

Many full text databases are available in only one language, or more, they may contain documents in different languages. Even if the user is able to understand the language of the documents in the database, it could be easier for him to express his need in his own language. For the case of databases containing documents in different languages, it is more simple to formulate the query in one language only and to retrieve documents in different languages. This paper present the developments and the first experiments of multilingual search, applied to french-english pair, for text data in nuclear field, based on the system SPIRIT. After reminding the general problems of full text databases search by queries formulated in natural language, we present the methods used to reformulate the queries and show how they can be expanded for multilingual search. The first results on data in nuclear field are presented (AFCEN norms and INIS abstracts). 4 refs

Abstracts to be Delivered at the 2014 Annual Conference of the Association of Medical Microbiology and Infectious Disease Canada, April 3 to 5, Victoria, British Columbia, Alphabetized According to the Surname of the First Author. Full-text Abstracts Can be Accessed at www.pulsus.com

Directory of Open Access Journals (Sweden)

2014-01-01

Full Text Available This document presents the titles of the abstracts to be presented at the 2014 Annual Conference of the Association of Medical Microbiology and Infectious Disease Canada (April 3 to 5, Victoria, British Columbia. The full-text abstracts are available online.

Conversion rates of abstracts presented at the Urological Society of Australia and New Zealand (USANZ) Annual Scientific Meeting into full-text journal articles.

Science.gov (United States)

Yoon, Peter D; Chalasani, Venu; Woo, Henry H

2012-08-01

What's known on the subject? and What does the study add? It is well known that the transition of a presented abstract in a scientific meeting to a journal article improves the quality of the meeting and prevents an abstract being incorporated into meta-analyses or practice guidelines without proper appraisal. This is the first analysis of USANZ Annual Scientific Meeting abstracts' conversion to full publication. With relatively low publication rates compared to other international meetings, this review identifies the need for mechanisms to encourage USANZ researchers to convert their abstracts into published articles. The numbers and characteristics of the abstracts presented at the Annual Scientific Meetings (ASM) of the Urological Society of Australia and New Zealand (USANZ) that are converted to peer-reviewed publications have not previously been analysed and published. We undertook a review of all abstracts presented at the USANZ ASM from 2005 to 2009. A PubMed search was performed between 15 June and 15 July 2012, using a search algorithm to identify the full-text publications of the presented abstracts. Correlation between abstract characteristics and publication rate was then examined to distinguish the predictors for publications. Of 614 abstracts that were presented at USANZ ASM between 2005 and 2009, 183 papers were published, giving a publication rate of 29.80%. The papers were predominantly published in urological journals and were more likely to be published if they were presented by an international author or were retrospective studies or if basic science research. The mean (SD) time to publication was 14.46 (13.89) months and the mean Impact Factor of journals where papers were published was 2.90. The overall publication rate was relatively low compared with other urological meetings held in America and Europe. USANZ has a challenge of encouraging higher-quality research from the authors to further enhance its publication rate and consequently the

Searching Harvard Business Review Online. . . Lessons in Searching a Full Text Database.

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Tenopir, Carol

1985-01-01

This article examines the Harvard Business Review Online (HBRO) database (bibliographic description fields, abstracts, extracted information, full text, subject descriptors) and reports on 31 sample HBRO searches conducted in Bibliographic Retrieval Services to test differences between searching full text and searching bibliographic record. Sample…

Layout-aware text extraction from full-text PDF of scientific articles

Directory of Open Access Journals (Sweden)

Ramakrishnan Cartic

2012-05-01

Full Text Available Abstract Background The Portable Document Format (PDF is the most commonly used file format for online scientific publications. The absence of effective means to extract text from these PDF files in a layout-aware manner presents a significant challenge for developers of biomedical text mining or biocuration informatics systems that use published literature as an information source. In this paper we introduce the ‘Layout-Aware PDF Text Extraction’ (LA-PDFText system to facilitate accurate extraction of text from PDF files of research articles for use in text mining applications. Results Our paper describes the construction and performance of an open source system that extracts text blocks from PDF-formatted full-text research articles and classifies them into logical units based on rules that characterize specific sections. The LA-PDFText system focuses only on the textual content of the research articles and is meant as a baseline for further experiments into more advanced extraction methods that handle multi-modal content, such as images and graphs. The system works in a three-stage process: (1 Detecting contiguous text blocks using spatial layout processing to locate and identify blocks of contiguous text, (2 Classifying text blocks into rhetorical categories using a rule-based method and (3 Stitching classified text blocks together in the correct order resulting in the extraction of text from section-wise grouped blocks. We show that our system can identify text blocks and classify them into rhetorical categories with Precision1 = 0.96% Recall = 0.89% and F1 = 0.91%. We also present an evaluation of the accuracy of the block detection algorithm used in step 2. Additionally, we have compared the accuracy of the text extracted by LA-PDFText to the text from the Open Access subset of PubMed Central. We then compared this accuracy with that of the text extracted by the PDF2Text system, 2commonly used to extract text from PDF

Building a protein name dictionary from full text: a machine learning term extraction approach

Directory of Open Access Journals (Sweden)

Campagne Fabien

2005-04-01

Full Text Available Abstract Background The majority of information in the biological literature resides in full text articles, instead of abstracts. Yet, abstracts remain the focus of many publicly available literature data mining tools. Most literature mining tools rely on pre-existing lexicons of biological names, often extracted from curated gene or protein databases. This is a limitation, because such databases have low coverage of the many name variants which are used to refer to biological entities in the literature. Results We present an approach to recognize named entities in full text. The approach collects high frequency terms in an article, and uses support vector machines (SVM to identify biological entity names. It is also computationally efficient and robust to noise commonly found in full text material. We use the method to create a protein name dictionary from a set of 80,528 full text articles. Only 8.3% of the names in this dictionary match SwissProt description lines. We assess the quality of the dictionary by studying its protein name recognition performance in full text. Conclusion This dictionary term lookup method compares favourably to other published methods, supporting the significance of our direct extraction approach. The method is strong in recognizing name variants not found in SwissProt.

Classification of protein-protein interaction full-text documents using text and citation network features.

Science.gov (United States)

Kolchinsky, Artemy; Abi-Haidar, Alaa; Kaur, Jasleen; Hamed, Ahmed Abdeen; Rocha, Luis M

2010-01-01

We participated (as Team 9) in the Article Classification Task of the Biocreative II.5 Challenge: binary classification of full-text documents relevant for protein-protein interaction. We used two distinct classifiers for the online and offline challenges: 1) the lightweight Variable Trigonometric Threshold (VTT) linear classifier we successfully introduced in BioCreative 2 for binary classification of abstracts and 2) a novel Naive Bayes classifier using features from the citation network of the relevant literature. We supplemented the supplied training data with full-text documents from the MIPS database. The lightweight VTT classifier was very competitive in this new full-text scenario: it was a top-performing submission in this task, taking into account the rank product of the Area Under the interpolated precision and recall Curve, Accuracy, Balanced F-Score, and Matthew's Correlation Coefficient performance measures. The novel citation network classifier for the biomedical text mining domain, while not a top performing classifier in the challenge, performed above the central tendency of all submissions, and therefore indicates a promising new avenue to investigate further in bibliome informatics.

Full text publication rates of studies presented at an international emergency medicine scientific meeting.

Science.gov (United States)

Chan, Jannet W M; Graham, Colin A

2011-09-01

The publication rate of full text papers following an abstract presentation at a medical conference is variable, and few studies have examined the situation with respect to international emergency medicine conferences. This retrospective study aimed to identify the publication rate of abstracts presented at the 2006 International Conference on Emergency Medicine (ICEM) held in Halifax, Canada. The full text publication rate was 33.2%, similar to previous emergency medicine meetings. English language barriers may play a role in the low publication rate seen.

Extracting Characteristics of the Study Subjects from Full-Text Articles.

Science.gov (United States)

Demner-Fushman, Dina; Mork, James G

Characteristics of the subjects of biomedical research are important in determining if a publication describing the research is relevant to a search. To facilitate finding relevant publications, MEDLINE citations provide Medical Subject Headings that describe the subjects' characteristics, such as their species, gender, and age. We seek to improve the recommendation of these headings by the Medical Text Indexer (MTI) that supports manual indexing of MEDLINE. To that end, we explore the potential of the full text of the publications. Using simple recall-oriented rule-based methods we determined that adding sentences extracted from the methods sections and captions to the abstracts prior to MTI processing significantly improved recall and F1 score with only a slight drop in precision. Improvements were also achieved in directly assigning several headings extracted from the full text. These results indicate the need for further development of automated methods capable of leveraging the full text for indexing.

Challenges for automatically extracting molecular interactions from full-text articles.

Science.gov (United States)

McIntosh, Tara; Curran, James R

2009-09-24

The increasing availability of full-text biomedical articles will allow more biomedical knowledge to be extracted automatically with greater reliability. However, most Information Retrieval (IR) and Extraction (IE) tools currently process only abstracts. The lack of corpora has limited the development of tools that are capable of exploiting the knowledge in full-text articles. As a result, there has been little investigation into the advantages of full-text document structure, and the challenges developers will face in processing full-text articles. We manually annotated passages from full-text articles that describe interactions summarised in a Molecular Interaction Map (MIM). Our corpus tracks the process of identifying facts to form the MIM summaries and captures any factual dependencies that must be resolved to extract the fact completely. For example, a fact in the results section may require a synonym defined in the introduction. The passages are also annotated with negated and coreference expressions that must be resolved.We describe the guidelines for identifying relevant passages and possible dependencies. The corpus includes 2162 sentences from 78 full-text articles. Our corpus analysis demonstrates the necessity of full-text processing; identifies the article sections where interactions are most commonly stated; and quantifies the proportion of interaction statements requiring coherent dependencies. Further, it allows us to report on the relative importance of identifying synonyms and resolving negated expressions. We also experiment with an oracle sentence retrieval system using the corpus as a gold-standard evaluation set. We introduce the MIM corpus, a unique resource that maps interaction facts in a MIM to annotated passages within full-text articles. It is an invaluable case study providing guidance to developers of biomedical IR and IE systems, and can be used as a gold-standard evaluation set for full-text IR tasks.

Multilingual access to full text databases; Acces multilingue aux bases de donnees en texte integral

Energy Technology Data Exchange (ETDEWEB)

Fluhr, C; Radwan, K [Institut National des Sciences et Techniques Nucleaires (INSTN), Centre d` Etudes de Saclay, 91 - Gif-sur-Yvette (France)

1990-05-01

Many full text databases are available in only one language, or more, they may contain documents in different languages. Even if the user is able to understand the language of the documents in the database, it could be easier for him to express his need in his own language. For the case of databases containing documents in different languages, it is more simple to formulate the query in one language only and to retrieve documents in different languages. This paper present the developments and the first experiments of multilingual search, applied to french-english pair, for text data in nuclear field, based on the system SPIRIT. After reminding the general problems of full text databases search by queries formulated in natural language, we present the methods used to reformulate the queries and show how they can be expanded for multilingual search. The first results on data in nuclear field are presented (AFCEN norms and INIS abstracts). 4 refs.

Full text

African Journals Online (AJOL)

IndexCopernicus Portal System

Abstract; The detection of single base mismatches in DNA is important for diagnostics, treatment of ... nucleic acid detectors, and show how such exciplexes can register the presence of .... Titration experiments were carried out using a stock.

The consistency between scientific papers presented at the Orthopaedic Trauma Association and their subsequent full-text publication.

Science.gov (United States)

Preston, Charles F; Bhandari, Mohit; Fulkerson, Eric; Ginat, Danial; Egol, Kenneth A; Koval, Kenneth J

2006-02-01

To determine the consistency of conclusions/statements made in podium presentations at the annual meeting of the Orthopaedic Trauma Association (OTA) with those in subsequent full-text publications. Also, to evaluate the nature and consistency of study design, methods, sample sizes, results and assign a corresponding level of evidence. Abstracts of the scientific programs of the OTA from 1994 to 1997 (N = 254) were queried by using the PubMed database to identify those studies resulting in a peer-reviewed, full-text publication. Of the 169 articles retrieved, 137 studies were the basis of our study after the exclusion criteria were applied: non-English language, basic science studies, anatomic dissection studies, and articles published in non-peer-reviewed journals. Information was abstracted onto a data form: first from the abstract published in the final meeting program, and then from the published journal article. Information was recorded regarding study issues, including the study design, primary objective, sample size, and statistical methods. We provided descriptive statistics about the frequency of consistent results between abstracts and full-text publications. The results were recorded as percentages and a 95% confidence interval was applied to each value. Study results were recorded for the abstract and full-text publication comparing results and the overall conclusion. A level of scientific-based evidence was assigned to each full-text publication. The final conclusion of the study remained the same 93.4% of the time. The method of study was an observational case series 52% of the time and a statement regarding the rate of patient follow-up was reported 42% of the time. Of the studies published, 18.2% consisted of a sample size smaller than the previously presented abstract. When the published papers had their level of evidence graded, 11% were level I, 16% level II, 17% level III, and 56% level IV. Authors conclusions were consistent with those in full-text

Full text and figure display improves bioscience literature search.

Directory of Open Access Journals (Sweden)

Anna Divoli

Full Text Available When reading bioscience journal articles, many researchers focus attention on the figures and their captions. This observation led to the development of the BioText literature search engine, a freely available Web-based application that allows biologists to search over the contents of Open Access Journals, and see figures from the articles displayed directly in the search results. This article presents a qualitative assessment of this system in the form of a usability study with 20 biologist participants using and commenting on the system. 19 out of 20 participants expressed a desire to use a bioscience literature search engine that displays articles' figures alongside the full text search results. 15 out of 20 participants said they would use a caption search and figure display interface either frequently or sometimes, while 4 said rarely and 1 said undecided. 10 out of 20 participants said they would use a tool for searching the text of tables and their captions either frequently or sometimes, while 7 said they would use it rarely if at all, 2 said they would never use it, and 1 was undecided. This study found evidence, supporting results of an earlier study, that bioscience literature search systems such as PubMed should show figures from articles alongside search results. It also found evidence that full text and captions should be searched along with the article title, metadata, and abstract. Finally, for a subset of users and information needs, allowing for explicit search within captions for figures and tables is a useful function, but it is not entirely clear how to cleanly integrate this within a more general literature search interface. Such a facility supports Open Access publishing efforts, as it requires access to full text of documents and the lifting of restrictions in order to show figures in the search interface.

Full text

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Abstract; The expression of EGFR and p53 has not been adequately studied as a prognostic tool in urinary bladder tumors. We analyzed 74 bladder cancer samples from Egypt for EGFR and p53 expression using immunohistochemistry. The tumors .... have some potential value in differential diagnosis of problem cases, but ...

Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text.

Science.gov (United States)

Garten, Yael; Altman, Russ B

2009-02-05

Pharmacogenomics studies the relationship between genetic variation and the variation in drug response phenotypes. The field is rapidly gaining importance: it promises drugs targeted to particular subpopulations based on genetic background. The pharmacogenomics literature has expanded rapidly, but is dispersed in many journals. It is challenging, therefore, to identify important associations between drugs and molecular entities--particularly genes and gene variants, and thus these critical connections are often lost. Text mining techniques can allow us to convert the free-style text to a computable, searchable format in which pharmacogenomic concepts (such as genes, drugs, polymorphisms, and diseases) are identified, and important links between these concepts are recorded. Availability of full text articles as input into text mining engines is key, as literature abstracts often do not contain sufficient information to identify these pharmacogenomic associations. Thus, building on a tool called Textpresso, we have created the Pharmspresso tool to assist in identifying important pharmacogenomic facts in full text articles. Pharmspresso parses text to find references to human genes, polymorphisms, drugs and diseases and their relationships. It presents these as a series of marked-up text fragments, in which key concepts are visually highlighted. To evaluate Pharmspresso, we used a gold standard of 45 human-curated articles. Pharmspresso identified 78%, 61%, and 74% of target gene, polymorphism, and drug concepts, respectively. Pharmspresso is a text analysis tool that extracts pharmacogenomic concepts from the literature automatically and thus captures our current understanding of gene-drug interactions in a computable form. We have made Pharmspresso available at http://pharmspresso.stanford.edu.

United European Gastroenterology Week scientific abstracts and their progression to full publication.

Science.gov (United States)

Raju, Suneil A; Sanders, David S; Akram, Rahim; Glover, Rebecca; Al-Rifaie, Ammar; Peever, Elise; Purves, Josh; Scanu, Emily; Kurien, Matthew

2017-10-01

Abstracts presentations at scientific meetings enable rapid dissemination of novel research. The percentage of abstracts that proceed to full publication from differing medical specialties is highly variable. This study aims to evaluate the outcomes of abstracts presented at the United European Gastroenterology Week (UEGW). All abstracts presented at UEGW between 2009 and 2011 were assessed. Cross-referencing of the first author, senior author and at least one keyword of the abstract was performed using PubMed and EMBASE databases. Abstracts and possible resultant full publications were then examined in tandem to ensure that they represented the same study. Data were also collected on lag time to publication, journal impact factors, country of the author and factors influencing subsequent publication. A total of 6785 abstracts (1438 oral and 5347 poster presentations) were presented during the period assessed. Of these, 2099 (30.9%) proceeded to full publication in indexed journals. Oral abstract presentations were most likely to proceed to full publication compared with poster presentations (odds ratio: 1.38, 95% confidence interval: 1.22-1.56) and were more likely to achieve publication in higher impact journals (median impact factor 4.78 vs. 2.89, PEuropean Gastroenterology abstract conversion rate to full publication (46.8%). This is the first study to assess the publication rates of UEGW. Findings are favourable with similar studies from other societies.

Enacted Reading Comprehension: Using Bodily Movement to Aid the Comprehension of Abstract Text Content.

Directory of Open Access Journals (Sweden)

Michael P Kaschak

Full Text Available We report a design study that assessed the feasibility of Enacted Reading Comprehension (ERC, an intervention designed to teach 3rd and 4th grade students (n = 40 and 25, respectively to use gestures to understand an increasingly abstract set of texts. Students were taught to use gestures to understand the idea of "opposing forces" in a concrete setting-the forces at play as tectonic plates move past each other-and then taught to use the gestures to understand opposing forces in more abstract situations. For example, students were taught to use gestures to understand the opposing sides of an argument, and to understand the internal conflicts that arise as individuals are faced with moral dilemmas. The results of our design study suggest that ERC has promise as a method for introducing students to the idea of using gesture to understand text content, and to employ this strategy in a range of reading contexts.

Full text and figure display improves bioscience literature search.

Science.gov (United States)

Divoli, Anna; Wooldridge, Michael A; Hearst, Marti A

2010-04-14

When reading bioscience journal articles, many researchers focus attention on the figures and their captions. This observation led to the development of the BioText literature search engine, a freely available Web-based application that allows biologists to search over the contents of Open Access Journals, and see figures from the articles displayed directly in the search results. This article presents a qualitative assessment of this system in the form of a usability study with 20 biologist participants using and commenting on the system. 19 out of 20 participants expressed a desire to use a bioscience literature search engine that displays articles' figures alongside the full text search results. 15 out of 20 participants said they would use a caption search and figure display interface either frequently or sometimes, while 4 said rarely and 1 said undecided. 10 out of 20 participants said they would use a tool for searching the text of tables and their captions either frequently or sometimes, while 7 said they would use it rarely if at all, 2 said they would never use it, and 1 was undecided. This study found evidence, supporting results of an earlier study, that bioscience literature search systems such as PubMed should show figures from articles alongside search results. It also found evidence that full text and captions should be searched along with the article title, metadata, and abstract. Finally, for a subset of users and information needs, allowing for explicit search within captions for figures and tables is a useful function, but it is not entirely clear how to cleanly integrate this within a more general literature search interface. Such a facility supports Open Access publishing efforts, as it requires access to full text of documents and the lifting of restrictions in order to show figures in the search interface.

Full text clustering and relationship network analysis of biomedical publications.

Directory of Open Access Journals (Sweden)

Renchu Guan

Full Text Available Rapid developments in the biomedical sciences have increased the demand for automatic clustering of biomedical publications. In contrast to current approaches to text clustering, which focus exclusively on the contents of abstracts, a novel method is proposed for clustering and analysis of complete biomedical article texts. To reduce dimensionality, Cosine Coefficient is used on a sub-space of only two vectors, instead of computing the Euclidean distance within the space of all vectors. Then a strategy and algorithm is introduced for Semi-supervised Affinity Propagation (SSAP to improve analysis efficiency, using biomedical journal names as an evaluation background. Experimental results show that by avoiding high-dimensional sparse matrix computations, SSAP outperforms conventional k-means methods and improves upon the standard Affinity Propagation algorithm. In constructing a directed relationship network and distribution matrix for the clustering results, it can be noted that overlaps in scope and interests among BioMed publications can be easily identified, providing a valuable analytical tool for editors, authors and readers.

UKPMC: a full text article resource for the life sciences.

Science.gov (United States)

McEntyre, Johanna R; Ananiadou, Sophia; Andrews, Stephen; Black, William J; Boulderstone, Richard; Buttery, Paula; Chaplin, David; Chevuru, Sandeepreddy; Cobley, Norman; Coleman, Lee-Ann; Davey, Paul; Gupta, Bharti; Haji-Gholam, Lesley; Hawkins, Craig; Horne, Alan; Hubbard, Simon J; Kim, Jee-Hyub; Lewin, Ian; Lyte, Vic; MacIntyre, Ross; Mansoor, Sami; Mason, Linda; McNaught, John; Newbold, Elizabeth; Nobata, Chikashi; Ong, Ernest; Pillai, Sharmila; Rebholz-Schuhmann, Dietrich; Rosie, Heather; Rowbotham, Rob; Rupp, C J; Stoehr, Peter; Vaughan, Philip

2011-01-01

UK PubMed Central (UKPMC) is a full-text article database that extends the functionality of the original PubMed Central (PMC) repository. The UKPMC project was launched as the first 'mirror' site to PMC, which in analogy to the International Nucleotide Sequence Database Collaboration, aims to provide international preservation of the open and free-access biomedical literature. UKPMC (http://ukpmc.ac.uk) has undergone considerable development since its inception in 2007 and now includes both a UKPMC and PubMed search, as well as access to other records such as Agricola, Patents and recent biomedical theses. UKPMC also differs from PubMed/PMC in that the full text and abstract information can be searched in an integrated manner from one input box. Furthermore, UKPMC contains 'Cited By' information as an alternative way to navigate the literature and has incorporated text-mining approaches to semantically enrich content and integrate it with related database resources. Finally, UKPMC also offers added-value services (UKPMC+) that enable grantees to deposit manuscripts, link papers to grants, publish online portfolios and view citation information on their papers. Here we describe UKPMC and clarify the relationship between PMC and UKPMC, providing historical context and future directions, 10 years on from when PMC was first launched.

Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion.

Science.gov (United States)

Agarwal, Shashank; Yu, Hong

2009-12-01

Biomedical texts can be typically represented by four rhetorical categories: Introduction, Methods, Results and Discussion (IMRAD). Classifying sentences into these categories can benefit many other text-mining tasks. Although many studies have applied different approaches for automatically classifying sentences in MEDLINE abstracts into the IMRAD categories, few have explored the classification of sentences that appear in full-text biomedical articles. We first evaluated whether sentences in full-text biomedical articles could be reliably annotated into the IMRAD format and then explored different approaches for automatically classifying these sentences into the IMRAD categories. Our results show an overall annotation agreement of 82.14% with a Kappa score of 0.756. The best classification system is a multinomial naïve Bayes classifier trained on manually annotated data that achieved 91.95% accuracy and an average F-score of 91.55%, which is significantly higher than baseline systems. A web version of this system is available online at-http://wood.ims.uwm.edu/full_text_classifier/.

Academic Journal Embargoes and Full Text Databases.

Science.gov (United States)

Brooks, Sam

2003-01-01

Documents the reasons for embargoes of academic journals in full text databases (i.e., publisher-imposed delays on the availability of full text content) and provides insight regarding common misconceptions. Tables present data on selected journals covering a cross-section of subjects and publishers and comparing two full text business databases.…

The Weaknesses of Full-Text Searching

Science.gov (United States)

Beall, Jeffrey

2008-01-01

This paper provides a theoretical critique of the deficiencies of full-text searching in academic library databases. Because full-text searching relies on matching words in a search query with words in online resources, it is an inefficient method of finding information in a database. This matching fails to retrieve synonyms, and it also retrieves…

Retrieval of publications addressing shared decision making: an evaluation of full-text searches on medical journal websites.

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Blanc, Xavier; Collet, Tinh-Hai; Auer, Reto; Iriarte, Pablo; Krause, Jan; Légaré, France; Cornuz, Jacques; Clair, Carole

2015-04-07

Full-text searches of articles increase the recall, defined by the proportion of relevant publications that are retrieved. However, this method is rarely used in medical research due to resource constraints. For the purpose of a systematic review of publications addressing shared decision making, a full-text search method was required to retrieve publications where shared decision making does not appear in the title or abstract. The objective of our study was to assess the efficiency and reliability of full-text searches in major medical journals for identifying shared decision making publications. A full-text search was performed on the websites of 15 high-impact journals in general internal medicine to look up publications of any type from 1996-2011 containing the phrase "shared decision making". The search method was compared with a PubMed search of titles and abstracts only. The full-text search was further validated by requesting all publications from the same time period from the individual journal publishers and searching through the collected dataset. The full-text search for "shared decision making" on journal websites identified 1286 publications in 15 journals compared to 119 through the PubMed search. The search within the publisher-provided publications of 6 journals identified 613 publications compared to 646 with the full-text search on the respective journal websites. The concordance rate was 94.3% between both full-text searches. Full-text searching on medical journal websites is an efficient and reliable way to identify relevant articles in the field of shared decision making for review or other purposes. It may be more widely used in biomedical research in other fields in the future, with the collaboration of publishers and journals toward open-access data.

Full journal publication of abstracts presented at the Nordic Congress of General Practice in 2009 and 2011

DEFF Research Database (Denmark)

Waldorff, Frans Boch; Petersen, Kristine; Vinther, Siri

2017-01-01

journal publications within a 36-month follow-up from both congresses. In cases of doubt, the first author was contacted directly. Main outcome measures: Full journal publication within 36 months after the congress. Results: A total of 200 abstracts were analyzed. Of these, 85 (42.5%) were identified...... articles within 36 months. Key points: Congress abstracts accepted for Nordic Congress of General Practice are not indexed in international search databases. Less than half of the abstracts accepted for oral or poster presentation at two consecutive Nordic Congresses of General Practice were published...... as full text articles within 36 months. Future congress committees could address this aspect in order to increase the visibility of and accessibility to research within the field of general practice....

Full Abstraction for HOPLA

DEFF Research Database (Denmark)

Nygaard, Mikkel; Winskel, Glynn

2003-01-01

A fully abstract denotational semantics for the higher-order process language HOPLA is presented. It characterises contextual and logical equivalence, the latter linking up with simulation. The semantics is a clean, domain-theoretic description of processes as downwards-closed sets of computation...

AfSBT Congress Abstracts: Zimbabwe 2014 | Adewuyi | Africa ...

African Journals Online (AJOL)

AfSBT Congress Abstracts: Zimbabwe 2014. James Ola-Banji Adewuyi. Abstract. No Abstract. Full Text: EMAIL FULL TEXT EMAIL FULL TEXT · DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT · AJOL African Journals Online. HOW TO USE AJOL... for Researchers · for Librarians · for Authors · FAQ's · More about AJOL ...

Subsequent full publication of abstracts presented in the annual meetings of the Spanish Society of Cardiology.

Science.gov (United States)

Alonso-Arroyo, Adolfo; Aleixandre-Benavent, Rafael; Vidal-Infer, Antonio; Anguita-Sánchez, Manuel; Chorro-Gascó, Francisco J; Bolaños-Pizarro, Máxima; Castelló-Cogollos, Lourdes; Navarro-Molina, Carolina; Valderrama-Zurián, Juan C

2014-01-01

The Spanish Society of Cardiology holds an annual national meeting with a large number of presentations but the number of full-text publications resulting from these presentations and the journals accepting these manuscripts is unknown. This study aimed to identify the full-text publication rate of accepted abstracts and to analyze the bibliometric features of subsequent publications. We randomly selected a sample of 300 oral presentations at the meetings of the Spanish Society of Cardiology in 2002, 2005 and 2008. Subsequent publications were identified through the Science Citation Index-Expanded, Scopus, Índice Médico Español, and Índice Bibliográfico Español en Ciencias de la Salud. Of 300 abstracts, 115 resulted in 147 full publications, representing a publication rate of 38.33%. The meeting with the highest publication rate (43%) was held in 2005. The subject category with the highest number of publications was Pediatric Cardiology/Congenital Heart Disease (58.8%). Time to full publication was usually 2 years (30.61%). Articles were published in 57 journals. The journals publishing the highest number of articles were Revista Española de Cardiología (n=55; 37.41%) and the European Heart Journal (n=8; 5.44%). The high percentage of articles published in the upper half of journals listed in Journal Citation Reports under the category of cardiac and cardiovascular system (83%) can be taken as an objective quality indicator of the results presented at these meetings. However, more than 60% of the abstracts did not result in full publications, thus depriving the scientific community of potentially interesting results. Copyright © 2013 Sociedad Española de Cardiología. Published by Elsevier Espana. All rights reserved.

Can abstract screening workload be reduced using text mining? User experiences of the tool Rayyan.

Science.gov (United States)

Olofsson, Hanna; Brolund, Agneta; Hellberg, Christel; Silverstein, Rebecca; Stenström, Karin; Österberg, Marie; Dagerhamn, Jessica

2017-09-01

One time-consuming aspect of conducting systematic reviews is the task of sifting through abstracts to identify relevant studies. One promising approach for reducing this burden uses text mining technology to identify those abstracts that are potentially most relevant for a project, allowing those abstracts to be screened first. To examine the effectiveness of the text mining functionality of the abstract screening tool Rayyan. User experiences were collected. Rayyan was used to screen abstracts for 6 reviews in 2015. After screening 25%, 50%, and 75% of the abstracts, the screeners logged the relevant references identified. A survey was sent to users. After screening half of the search result with Rayyan, 86% to 99% of the references deemed relevant to the study were identified. Of those studies included in the final reports, 96% to 100% were already identified in the first half of the screening process. Users rated Rayyan 4.5 out of 5. The text mining function in Rayyan successfully helped reviewers identify relevant studies early in the screening process. Copyright © 2017 John Wiley & Sons, Ltd.

From Abstract Art to Abstracted Artists

Directory of Open Access Journals (Sweden)

Romi Mikulinsky

2016-11-01

Full Text Available What lineage connects early abstract films and machine-generated YouTube videos? Hans Richter’s famous piece Rhythmus 21 is considered to be the first abstract film in the experimental tradition. The Webdriver Torso YouTube channel is composed of hundreds of thousands of machine-generated test patterns designed to check frequency signals on YouTube. This article discusses geometric abstraction vis-à-vis new vision, conceptual art and algorithmic art. It argues that the Webdriver Torso is an artistic marvel indicative of a form we call mathematical abstraction, which is art performed by computers and, quite possibly, for computers.

Mining biological networks from full-text articles.

Science.gov (United States)

Czarnecki, Jan; Shepherd, Adrian J

2014-01-01

The study of biological networks is playing an increasingly important role in the life sciences. Many different kinds of biological system can be modelled as networks; perhaps the most important examples are protein-protein interaction (PPI) networks, metabolic pathways, gene regulatory networks, and signalling networks. Although much useful information is easily accessible in publicly databases, a lot of extra relevant data lies scattered in numerous published papers. Hence there is a pressing need for automated text-mining methods capable of extracting such information from full-text articles. Here we present practical guidelines for constructing a text-mining pipeline from existing code and software components capable of extracting PPI networks from full-text articles. This approach can be adapted to tackle other types of biological network.

Conversion of Plastic Surgery meeting abstract presentations to full manuscripts: a brazilian perspective.

Science.gov (United States)

Denadai, Rafael; Pinho, André Silveira; Samartine, Hugo; Denadai, Rodrigo; Raposo-Amaral, Cassio Eduardo

2017-01-01

to assess the conversion rate of Plastic Surgery meeting abstract presentations to full manuscript publications and examine factors associated with this conversion. we assessed the abstracts presented at the 47th and 48th Brazilian Congresses of Plastic Surgery by cross-referencing with multiple databases. We analyzed the Abstracts' characteristics associated with full manuscript publications. of the 200 abstracts presented, 50 abstracts were subsequently published in full, giving the conference a conversion rate of 25%. The mean time to publish was 15.00±13.75 months. In total, there were 4.93±1.63 authors per abstract and 67.8±163 subjects per abstract; 43.5% of the abstracts were of retrospective studies; 69% comprised the plastic surgery topics head and neck, and chest and trunk, and 88.5% had no statistical analysis. Overall, 80% of the manuscripts were published in plastic surgery journals, 76% had no impact factor and 52% had no citations. Bivariate and multivariate analyses revealed the presence of statistical analysis to be the most significant (previstas de Cirurgia Plástica, 76% não exibiam fator de impacto e 52% não possuíam citações. As análises bivariada e multivariada revelaram que a presença de análise estatística foi o fator preditivo significativo (p<0,05) para a conversão de resumos em manuscritos completos. a taxa de conversão deste estudo bibliométrico foi inferior à tendência de conversão descrita em congressos internacionais de Cirurgia Plástica, e a presença de análise estatística foi um determinante para o sucesso de conversão.

Layout-aware text extraction from full-text PDF of scientific articles.

Science.gov (United States)

Ramakrishnan, Cartic; Patnia, Abhishek; Hovy, Eduard; Burns, Gully Apc

2012-05-28

The Portable Document Format (PDF) is the most commonly used file format for online scientific publications. The absence of effective means to extract text from these PDF files in a layout-aware manner presents a significant challenge for developers of biomedical text mining or biocuration informatics systems that use published literature as an information source. In this paper we introduce the 'Layout-Aware PDF Text Extraction' (LA-PDFText) system to facilitate accurate extraction of text from PDF files of research articles for use in text mining applications. Our paper describes the construction and performance of an open source system that extracts text blocks from PDF-formatted full-text research articles and classifies them into logical units based on rules that characterize specific sections. The LA-PDFText system focuses only on the textual content of the research articles and is meant as a baseline for further experiments into more advanced extraction methods that handle multi-modal content, such as images and graphs. The system works in a three-stage process: (1) Detecting contiguous text blocks using spatial layout processing to locate and identify blocks of contiguous text, (2) Classifying text blocks into rhetorical categories using a rule-based method and (3) Stitching classified text blocks together in the correct order resulting in the extraction of text from section-wise grouped blocks. We show that our system can identify text blocks and classify them into rhetorical categories with Precision1 = 0.96% Recall = 0.89% and F1 = 0.91%. We also present an evaluation of the accuracy of the block detection algorithm used in step 2. Additionally, we have compared the accuracy of the text extracted by LA-PDFText to the text from the Open Access subset of PubMed Central. We then compared this accuracy with that of the text extracted by the PDF2Text system, 2commonly used to extract text from PDF. Finally, we discuss preliminary error analysis for

48 CFR 2852.102-270 - Incorporation in full text.

Science.gov (United States)

2010-10-01

... 48 Federal Acquisition Regulations System 6 2010-10-01 2010-10-01 true Incorporation in full text... 2852.102-270 Incorporation in full text. JAR provisions or clauses shall be incorporated in solicitations and contracts in full text. ...

48 CFR 1952.102-2 - Incorporation in full text.

Science.gov (United States)

2010-10-01

... 48 Federal Acquisition Regulations System 6 2010-10-01 2010-10-01 true Incorporation in full text... Clauses 1952.102-2 Incorporation in full text. All IAAR provisions and clauses shall be incorporated in solicitations and/or contracts in full text. ...

BC4GO: a full-text corpus for the BioCreative IV GO task.

Science.gov (United States)

Van Auken, Kimberly; Schaeffer, Mary L; McQuilton, Peter; Laulederkind, Stanley J F; Li, Donghui; Wang, Shur-Jen; Hayman, G Thomas; Tweedie, Susan; Arighi, Cecilia N; Done, James; Müller, Hans-Michael; Sternberg, Paul W; Mao, Yuqing; Wei, Chih-Hsuan; Lu, Zhiyong

2014-01-01

Gene function curation via Gene Ontology (GO) annotation is a common task among Model Organism Database groups. Owing to its manual nature, this task is considered one of the bottlenecks in literature curation. There have been many previous attempts at automatic identification of GO terms and supporting information from full text. However, few systems have delivered an accuracy that is comparable with humans. One recognized challenge in developing such systems is the lack of marked sentence-level evidence text that provides the basis for making GO annotations. We aim to create a corpus that includes the GO evidence text along with the three core elements of GO annotations: (i) a gene or gene product, (ii) a GO term and (iii) a GO evidence code. To ensure our results are consistent with real-life GO data, we recruited eight professional GO curators and asked them to follow their routine GO annotation protocols. Our annotators marked up more than 5000 text passages in 200 articles for 1356 distinct GO terms. For evidence sentence selection, the inter-annotator agreement (IAA) results are 9.3% (strict) and 42.7% (relaxed) in F1-measures. For GO term selection, the IAAs are 47% (strict) and 62.9% (hierarchical). Our corpus analysis further shows that abstracts contain ∼ 10% of relevant evidence sentences and 30% distinct GO terms, while the Results/Experiment section has nearly 60% relevant sentences and >70% GO terms. Further, of those evidence sentences found in abstracts, less than one-third contain enough experimental detail to fulfill the three core criteria of a GO annotation. This result demonstrates the need of using full-text articles for text mining GO annotations. Through its use at the BioCreative IV GO (BC4GO) task, we expect our corpus to become a valuable resource for the BioNLP research community. Database URL: http://www.biocreative.org/resources/corpora/bc-iv-go-task-corpus/. Published by Oxford University Press 2014. This work is written by US

Is the Abstract a Mere Teaser? Evaluating Generosity of Article Abstracts in the Environmental Sciences

Directory of Open Access Journals (Sweden)

Liana Ermakova

2018-05-01

Full Text Available An abstract is not only a mirror of the full article; it also aims to draw attention to the most important information of the document it summarizes. Many studies have compared abstracts with full texts for their informativeness. In contrast to previous studies, we propose to investigate this relation based not only on the amount of information given by the abstract but also on its importance. The main objective of this paper is to introduce a new metric called GEM to measure the “generosity” or representativeness of an abstract. Schematically speaking, a generous abstract should have the best possible score of similarity for the sections important to the reader. Based on a questionnaire gathering information from 630 researchers, we were able to weight sections according to their importance. In our approach, seven sections were first automatically detected in the full text. The accuracy of this classification into sections was above 80% compared with a dataset of documents where sentences were assigned to sections by experts. Second, each section was weighted according to the questionnaire results. The GEM score was then calculated as a sum of weights of sections in the full text corresponding to sentences in the abstract normalized over the total sum of weights of sections in the full text. The correlation between GEM score and the mean of the scores assigned by annotators was higher than the correlation between scores from different experts. As a case study, the GEM score was calculated for 36,237 articles in environmental sciences (1930–2013 retrieved from the French ISTEX database. The main result was that GEM score has increased over time. Moreover, this trend depends on subject area and publisher. No correlation was found between GEM score and citation rate or open access status of articles. We conclude that abstracts are more generous in recent publications and cannot be considered as mere teasers. This research should be pursued

Factors Impacting the Conversion of Abstracts Presented at the Canadian Cardiovascular Congress Meetings to Full Publications

DEFF Research Database (Denmark)

Abuzeid, W.; Fosbøl, E.; Fosbøl, Philip Loldrup

2013-01-01

associated with transition of abstracts to full publications.BackgroundThe rate of conversion of abstracts presented at scientific meetings into peer reviewed published manuscripts, has been a topic of interest for various medical specialties. Rapid translation of abstracts into manuscripts allows...... for reliable and rapid communication of scientific knowledge into practice. Methods;Using a previously validated automated computer algorithm, we searched the ISI Web of Science to identify peer-reviewed full manuscript publications of abstracts presented at the CCC. We manually entered information about...

An Eye-Tracking Study of Learning from Science Text with Concrete and Abstract Illustrations

Science.gov (United States)

Mason, Lucia; Pluchino, Patrik; Tornatora, Maria Caterina; Ariasi, Nicola

2013-01-01

This study investigated the online process of reading and the offline learning from an illustrated science text. The authors examined the effects of using a concrete or abstract picture to illustrate a text and adopted eye-tracking methodology to trace text and picture processing. They randomly assigned 59 eleventh-grade students to 3 reading…

Extractive text summarization system to aid data extraction from full text in systematic review development.

Science.gov (United States)

Bui, Duy Duc An; Del Fiol, Guilherme; Hurdle, John F; Jonnalagadda, Siddhartha

2016-12-01

Extracting data from publication reports is a standard process in systematic review (SR) development. However, the data extraction process still relies too much on manual effort which is slow, costly, and subject to human error. In this study, we developed a text summarization system aimed at enhancing productivity and reducing errors in the traditional data extraction process. We developed a computer system that used machine learning and natural language processing approaches to automatically generate summaries of full-text scientific publications. The summaries at the sentence and fragment levels were evaluated in finding common clinical SR data elements such as sample size, group size, and PICO values. We compared the computer-generated summaries with human written summaries (title and abstract) in terms of the presence of necessary information for the data extraction as presented in the Cochrane review's study characteristics tables. At the sentence level, the computer-generated summaries covered more information than humans do for systematic reviews (recall 91.2% vs. 83.8%, p<0.001). They also had a better density of relevant sentences (precision 59% vs. 39%, p<0.001). At the fragment level, the ensemble approach combining rule-based, concept mapping, and dictionary-based methods performed better than individual methods alone, achieving an 84.7% F-measure. Computer-generated summaries are potential alternative information sources for data extraction in systematic review development. Machine learning and natural language processing are promising approaches to the development of such an extractive summarization system. Copyright © 2016 Elsevier Inc. All rights reserved.

Full text publication rates of papers presented at the British Foot and Ankle Society.

Science.gov (United States)

Marsland, D; Mumith, A; Taylor, H P

2017-07-13

Techniques in foot and ankle surgery have expanded rapidly in recent years, often presented at national society meetings. It is important that research is published to guide evidence based practice. Many abstracts however do not go on to full text publication. A database was created of all abstracts presented at BOFAS meetings from 2009 to 2013. Computerised searches were performed using PubMed and Google search engines. In total 341 papers were presented, with an overall publication rate of 31.7%. Of 251 clinical papers, 200 were case series (79.6%). Factors associated with publication success included basic science studies, papers related to arthroscopic surgery and research performed outside the UK. A relatively low conversion rate from presentation to publication could be as a result of papers failing to pass the scrutiny of peer review, or that the work is never formally submitted for publication. The information from this study could be used to prioritise future research and promote higher quality research. Copyright © 2017 European Foot and Ankle Society. Published by Elsevier Ltd. All rights reserved.

Publication trends of shared decision making in 15 high impact medical journals: a full-text review with bibliometric analysis.

Science.gov (United States)

Blanc, Xavier; Collet, Tinh-Hai; Auer, Reto; Fischer, Roland; Locatelli, Isabella; Iriarte, Pablo; Krause, Jan; Légaré, France; Cornuz, Jacques

2014-08-09

Shared Decision Making (SDM) is increasingly advocated as a model for medical decision making. However, there is still low use of SDM in clinical practice. High impact factor journals might represent an efficient way for its dissemination. We aimed to identify and characterize publication trends of SDM in 15 high impact medical journals. We selected the 15 general and internal medicine journals with the highest impact factor publishing original articles, letters and editorials. We retrieved publications from 1996 to 2011 through the full-text search function on each journal website and abstracted bibliometric data. We included publications of any type containing the phrase "shared decision making" or five other variants in their abstract or full text. These were referred to as SDM publications. A polynomial Poisson regression model with logarithmic link function was used to assess the evolution across the period of the number of SDM publications according to publication characteristics. We identified 1285 SDM publications out of 229,179 publications in 15 journals from 1996 to 2011. The absolute number of SDM publications by journal ranged from 2 to 273 over 16 years. SDM publications increased both in absolute and relative numbers per year, from 46 (0.32% relative to all publications from the 15 journals) in 1996 to 165 (1.17%) in 2011. This growth was exponential (P Full-text search retrieved ten times more SDM publications than a similar PubMed search (1285 vs. 119 respectively). This review in full-text showed that SDM publications increased exponentially in major medical journals from 1996 to 2011. This growth might reflect an increased dissemination of the SDM concept to the medical community.

Full Text Psychology Journals Available from Popular Library Databases

Science.gov (United States)

Joswick, Kathleen E.

2006-01-01

The author identified 433 core journals in psychology and investigated their full text availability in popular databases. While 62 percent of the studied journals were available in at least one database, access from individual databases ranged from 1.4 percent to 38.1 percent of the titles. The full text of influential psychology journals is not…

Factors Affecting Subsequent Full-text Publication of Papers Presented at the Annual Conference of the Indian Academy of Pediatrics.

Science.gov (United States)

Khalil, Sumaira; Mishra, Devendra; Mishra, Ruchi; Gupta, Shalu

2017-02-15

To study the factors associated with the subsequent (over next 9 years) full-text publication of papers presented at the 44th National Conference of Indian Academy of Pediatrics (PEDICON), 2007. All papers presented at PEDICON 2007 were searched for subsequent full-text publication over the next 9 years in English-language journals by an internet-based search. The published papers were compared with the conference-abstracts. 74 (16%) of the 450 abstracts presented were subsequently published; 61 (82.4%) in Medline-indexed journals. Majority (50, 67.6%) of the papers was published within the first 36 mo in journals with mean (SD) impact factor of 2.62 (1.63). The factors significantly associated with subsequent publication were papers presented as award papers (Pfull-papers, 55% had a change in title; authors were changed in 65%, and participants' numbers were dissimilar in 8.6%. There is a need to identify the factors responsible for this low rate of subsequent publication, and interventions to improve it both at institutional and researchers' level.

Tagging narrator's names in Hadith text | Rahman | Journal of ...

African Journals Online (AJOL)

N.A. Rahman, N.K. Ismail, Z.M. Nor, M.N. Alias, M.S. Kamis, N Alias. Abstract. No Abstract. Keywords: tagging; hadith text; name. Full Text: EMAIL FREE FULL TEXT EMAIL FREE FULL TEXT · DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT · http://dx.doi.org/10.4314/jfas.v9i5s.21 · AJOL African Journals Online. HOW TO ...

"Free full text articles": where to search for them?

Science.gov (United States)

Singh, Ashish; Singh, Manish; Singh, Ajai Kumar; Singh, Deepti; Singh, Pratibha; Sharma, Abhishek

2011-07-01

References form the backbone of any medical literature. Presently, because of high inflation, it is very difficult for any library/organization/college to purchase all journals. The condition is even worse for an individual person, such as private practitioners. The solution lies in the free availability of full-text articles. Here, the authors share their experiences about the accessibility of free full-text articles.

Empirical investigations into full-text protein interaction Article Categorization Task (ACT) in the BioCreative II.5 Challenge.

Science.gov (United States)

Lan, Man; Su, Jian

2010-01-01

The selection of protein interaction documents is one important application for biology research and has a direct impact on the quality of downstream BioNLP applications, i.e., information extraction and retrieval, summarization, QA, etc. The BioCreative II.5 Challenge Article Categorization task (ACT) involves doing a binary text classification to determine whether a given structured full-text article contains protein interaction information. This may be the first attempt at classification of full-text protein interaction documents in wide community. In this paper, we compare and evaluate the effectiveness of different section types in full-text articles for text classification. Moreover, in practice, the less number of true-positive samples results in unstable performance and unreliable classifier trained on it. Previous research on learning with skewed class distributions has altered the class distribution using oversampling and downsampling. We also investigate the skewed protein interaction classification and analyze the effect of various issues related to the choice of external sources, oversampling training sets, classifiers, etc. We report on the various factors above to show that 1) a full-text biomedical article contains a wealth of scientific information important to users that may not be completely represented by abstracts and/or keywords, which improves the accuracy performance of classification and 2) reinforcing true-positive samples significantly increases the accuracy and stability performance of classification.

Characterizing the Influence of Abstraction in Full-Scale Wind Turbine Nacelle Testing: Preprint

Energy Technology Data Exchange (ETDEWEB)

Schkoda, Ryan; Bibo, Amin; Guo, Yi; Lambert, Scott; Wallen, Robb

2016-08-01

In recent years, there has been a growing interest in full-scale wind turbine nacelle testing to complement individual component testing. As a result, several wind turbine nacelle test benches have been built to perform such testing with the intent of loading the integrated components as they are in the field. However, when mounted on a test bench the nacelle is not on the top of a tower and does not have blades attached to it--this is a form of abstraction. This paper aims to quantify the influence of such an abstraction on the dynamic response of the nacelle through a series of simulation case studies. The responses of several nacelle components are studied including the main bearing, main shaft, gearbox supports, generator, and yaw bearing interface. Results are presented to highlight the differences in the dynamic response of the nacelle caused by the abstraction. Additionally, the authors provide recommendations for mitigating the effects of the abstraction.

Competition between abstraction and exchange channels in H + HCN reaction: Full-dimensional quantum dynamics

Energy Technology Data Exchange (ETDEWEB)

Jiang, Bin; Guo, Hua, E-mail: hguo@unm.edu [Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131 (United States)

2013-12-14

Dynamics of the title reaction is investigated on an ab initio based potential energy surface using a full-dimensional quantum wave packet method within the centrifugal sudden approximation. It is shown that the reaction between H and HCN leads to both the hydrogen exchange and hydrogen abstraction channels. The exchange channel has a lower threshold and larger cross section than the abstraction channel. It also has more oscillations due apparently to quantum resonances. Both channels are affected by long-lived resonances supported by potential wells. Comparison with experimental cross sections indicates underestimation of the abstraction barrier height.

Database citation in full text biomedical articles.

Science.gov (United States)

Kafkas, Şenay; Kim, Jee-Hyub; McEntyre, Johanna R

2013-01-01

Molecular biology and literature databases represent essential infrastructure for life science research. Effective integration of these data resources requires that there are structured cross-references at the level of individual articles and biological records. Here, we describe the current patterns of how database entries are cited in research articles, based on analysis of the full text Open Access articles available from Europe PMC. Focusing on citation of entries in the European Nucleotide Archive (ENA), UniProt and Protein Data Bank, Europe (PDBe), we demonstrate that text mining doubles the number of structured annotations of database record citations supplied in journal articles by publishers. Many thousands of new literature-database relationships are found by text mining, since these relationships are also not present in the set of articles cited by database records. We recommend that structured annotation of database records in articles is extended to other databases, such as ArrayExpress and Pfam, entries from which are also cited widely in the literature. The very high precision and high-throughput of this text-mining pipeline makes this activity possible both accurately and at low cost, which will allow the development of new integrated data services.

Searching for Bill and Jane: Electronic Full-Text Literature.

Science.gov (United States)

Still, Julie; Kassabian, Vibiana

1998-01-01

Examines electronic full-text literature available on the World Wide Web and on CD-ROM. Discusses authors and genres, electronic texts, and fees. Highlights Shakespeare, Jane Austen, and nature writing. Provides a bibliography of Web guides, specialized Shakespeare pages, and pages dealing with the Shakespeare authorship debate and secondary…

BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph.

Science.gov (United States)

Peng, Yifan; Arighi, Cecilia; Wu, Cathy H; Vijay-Shanker, K

2016-01-01

There has been a large growth in the number of biomedical publications that report experimental results. Many of these results concern detection of protein-protein interactions (PPI). In BioCreative V, we participated in the BioC task and developed a PPI system to detect text passages with PPIs in the full-text articles. By adopting the BioC format, the output of the system can be seamlessly added to the biocuration pipeline with little effort required for the system integration. A distinctive feature of our PPI system is that it utilizes extended dependency graph, an intermediate level of representation that attempts to abstract away syntactic variations in text. As a result, we are able to use only a limited set of rules to extract PPI pairs in the sentences, and additional rules to detect additional passages for PPI pairs. For evaluation, we used the 95 articles that were provided for the BioC annotation task. We retrieved the unique PPIs from the BioGRID database for these articles and show that our system achieves a recall of 83.5%. In order to evaluate the detection of passages with PPIs, we further annotated Abstract and Results sections of 20 documents from the dataset and show that an f-value of 80.5% was obtained. To evaluate the generalizability of the system, we also conducted experiments on AIMed, a well-known PPI corpus. We achieved an f-value of 76.1% for sentence detection and an f-value of 64.7% for unique PPI detection.Database URL: http://proteininformationresource.org/iprolink/corpora. © The Author(s) 2016. Published by Oxford University Press.

Rate and factors influencing the conversion of abstracts presented at the argentinian congress of hypertension meetings to indexed full peer-reviewed publications.

Science.gov (United States)

Barochiner, J; Martínez, R; Choi, M; Espeche, W; Micali, R G; Tomat, A

2018-03-01

Publication rates vary significantly among different scientific meetings, with many abstracts never being published as peer-reviewed articles. This issue has never been investigated in the Hypertension field in Argentina. Our purpose was to determine the proportion of abstracts presented at the Argentinian Congress of Hypertension meetings that were published as full articles in peer-reviewed indexed journals, the time lag to publication and the factors associated with successful publication. we conducted a PubMed search to identify peer-reviewed publications of abstracts presented at the Argentinian Congress of Hypertension meetings between 2006 and 2015, assessing publication rate along with the time lag to publication. We also extracted information about several abstract characteristics and, for those that got published, we recorded the date of publication and journal name with its impact factor and H index. Predictors of publication were analyzed using a multivariable model. a total of 619 abstracts were presented between 2006 and 2015. The rate of conversion to full-text peer-reviewed articles by June 2017 was 28.1% (95%CI 24.7-31.8%), with a median time to publication of 15.7 months (IQR 8-30.9). On multivariable analysis, the independent predictors of publication were basic science category (OR 5 [95%CI 2.3-10.8], p<0.001), oral presentation (OR 2.8 [95%CI 1.6-4.9], p<0.001) and being an award winner for the presentation (OR 3 [95%CI 1.3-6.8], p=0.01). conversion rate to full peer-reviewed articles of abstracts presented at the Argentinian Congress of Hypertension meetings is far from ideal, with potential areas where efforts should be concentrated to improve dissemination of knowledge. Copyright © 2018 SEH-LELHA. Publicado por Elsevier España, S.L.U. All rights reserved.

6th AfSBT Congress Abstracts | Congress Participants | Africa ...

African Journals Online (AJOL)

All Abstracts available in PDF Document. Full Text: EMAIL FULL TEXT EMAIL FULL TEXT · DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT · AJOL African Journals Online. HOW TO USE AJOL... for Researchers · for Librarians · for Authors · FAQ's · More about AJOL · AJOL's Partners · Terms and Conditions of Use ...

Full text clustering and relationship network analysis of biomedical publications.

Science.gov (United States)

Guan, Renchu; Yang, Chen; Marchese, Maurizio; Liang, Yanchun; Shi, Xiaohu

2014-01-01

Rapid developments in the biomedical sciences have increased the demand for automatic clustering of biomedical publications. In contrast to current approaches to text clustering, which focus exclusively on the contents of abstracts, a novel method is proposed for clustering and analysis of complete biomedical article texts. To reduce dimensionality, Cosine Coefficient is used on a sub-space of only two vectors, instead of computing the Euclidean distance within the space of all vectors. Then a strategy and algorithm is introduced for Semi-supervised Affinity Propagation (SSAP) to improve analysis efficiency, using biomedical journal names as an evaluation background. Experimental results show that by avoiding high-dimensional sparse matrix computations, SSAP outperforms conventional k-means methods and improves upon the standard Affinity Propagation algorithm. In constructing a directed relationship network and distribution matrix for the clustering results, it can be noted that overlaps in scope and interests among BioMed publications can be easily identified, providing a valuable analytical tool for editors, authors and readers.

Investigating and Annotating the Role of Citation in Biomedical Full-Text Articles.

Science.gov (United States)

Yu, Hong; Agarwal, Shashank; Frid, Nadya

2009-11-01

Citations are ubiquitous in scientific articles and play important roles for representing the semantic content of a full-text biomedical article. In this work, we manually examined full-text biomedical articles to analyze the semantic content of citations in full-text biomedical articles. After developing a citation relation schema and annotation guideline, our pilot annotation results show an overall agreement of 0.71, and here we report on the research challenges and the lessons we've learned while trying to overcome them. Our work is a first step toward automatic citation classification in full-text biomedical articles, which may contribute to many text mining tasks, including information retrieval, extraction, summarization, and question answering.

Full-Text Linking: Affiliated versus Nonaffiliated Access in a Free Database.

Science.gov (United States)

Grogg, Jill E.; Andreadis, Debra K.; Kirk, Rachel A.

2002-01-01

Presents a comparison of access to full-text articles from a free bibliographic database (PubSCIENCE) for affiliated and unaffiliated users. Found that affiliated users had access to more full-text articles than unaffiliated users had, and that both types of users could increase their level of access through additional searching and greater…

SERVICES OF FULL-TEXT SEARCHING IN A DISTRIBUTED INFORMATION ENVIRONMENT (PROJECT HUMANITARIANA

Directory of Open Access Journals (Sweden)

S. K. Lyapin

2015-01-01

Full Text Available Problem statement. We justify the possibility of full-text search services application in both universal and specialized (in terms of resource base digital libraries for the extraction and analysis of the context knowledge in the humanities. The architecture and services of virtual information and resource center for extracting knowledge from the humanitarian texts generated by «Humanitariana» project are described. The functional integration of the resources and services for a full-text search in a distributed decentralized environment, organized in the Internet / Intranet architecture under the control of the client (user browser accessing a variety of independent servers. An algorithm for a distributed full-text query implementation is described. Methods. Method of combining requency-ranked and paragraph-oriented full-text queries is used: the first are used for the preliminary analysis of the subject area or a combination product (explication of "vertical" context, or macro context, the second - for the explication of "horizontal" context, or micro context within copyright paragraph. The results of the frequency-ranked queries are used to compile paragraph-oriented queries. Results. The results of textual research are shown on the topics "The question of fact in Russian philosophy", "The question of loneliness in Russian philosophy and culture". About 50 pieces of context knowledge on the total resource base of about 2,500 full-text resources have been explicated and briefly described to their further expert investigating. Practical significance. The proposed technology (advanced full-text searching services in a distributed information environment can be used for the information support of humanitarian studies and education in the humanities, for functional integration of resources and services of various organizations, for carrying out interdisciplinary research.

Getting more out of biomedical documents with GATE's full lifecycle open source text analytics.

Directory of Open Access Journals (Sweden)

Hamish Cunningham

Full Text Available This software article describes the GATE family of open source text analysis tools and processes. GATE is one of the most widely used systems of its type with yearly download rates of tens of thousands and many active users in both academic and industrial contexts. In this paper we report three examples of GATE-based systems operating in the life sciences and in medicine. First, in genome-wide association studies which have contributed to discovery of a head and neck cancer mutation association. Second, medical records analysis which has significantly increased the statistical power of treatment/outcome models in the UK's largest psychiatric patient cohort. Third, richer constructs in drug-related searching. We also explore the ways in which the GATE family supports the various stages of the lifecycle present in our examples. We conclude that the deployment of text mining for document abstraction or rich search and navigation is best thought of as a process, and that with the right computational tools and data collection strategies this process can be made defined and repeatable. The GATE research programme is now 20 years old and has grown from its roots as a specialist development tool for text processing to become a rather comprehensive ecosystem, bringing together software developers, language engineers and research staff from diverse fields. GATE now has a strong claim to cover a uniquely wide range of the lifecycle of text analysis systems. It forms a focal point for the integration and reuse of advances that have been made by many people (the majority outside of the authors' own group who work in text processing for biomedicine and other areas. GATE is available online under GNU open source licences and runs on all major operating systems. Support is available from an active user and developer community and also on a commercial basis.

FTP: Full-Text Publishing?

Science.gov (United States)

Jul, Erik

1992-01-01

Describes the use of file transfer protocol (FTP) on the INTERNET computer network and considers its use as an electronic publishing system. The differing electronic formats of text files are discussed; the preparation and access of documents are described; and problems are addressed, including a lack of consistency. (LRW)

The Flip Sides of Full-Text: Superindex and the Harvard Business Review/Online.

Science.gov (United States)

Dadlez, Eva M.

1984-01-01

This article illustrates similarities between two different types of full-text databases--Superindex, Harvard Business Review/Online--and uses them as arena to demonstrate search and display applications of full-text. The selection of logical operators, full-text search strategies, and keywords and Bibliographic Retrieval Service's Occurrence…

The Searchbench - Combining Sentence-semantic, Full-text and Bibliographic Search in Digital Libraries

Directory of Open Access Journals (Sweden)

Ulrich Schäfer

2013-02-01

Full Text Available We describe a novel approach to precise searching in the full content of digital libraries. The Searchbench (for search workbench is based on sentence-wise syntactic and semantic natural language processing (NLP of both born-digital and scanned publications in PDF format. The term born-digital means natively digital, i.e. prepared electronically using typesetting systems such as LaTeX, OpenOffice, and the like. In the Searchbench, queries can be formulated as (possibly underspecified statements, consisting of simple subject-predicate-object constructs such as ‘algorithm improves word alignment’. This reduces the number of false hits in large document collections when the search words happen to appear close to each other, but are not semantically related. The method also abstracts from passive voice and predicate synonyms. Moreover, negated statements can be excluded from the search results, and negated antonym predicates again count as synonyms (e.g. not include = exclude.In the Searchbench, a sentence-semantic search can be combined with search filters for classical full-text, bibliographic metadata and automatically computed domain terms. Auto-suggest fields facilitate text input. Queries can be bookmarked or emailed. Furthermore, a novel citation browser in the Searchbench allows graphical navigation in citation networks. These have been extracted automatically from metadata and paper texts. The citation browser displays short phrases from citation sentences at the edges in the citation graph and thus allows students and researchers to quickly browse publications and immerse into a new research field. By clicking on a citation edge, the original citation sentence is shown in context, and optionally also in the original PDF layout.To showcase the usefulness of our research, we have a applied it to a collection of currently approx. 25,000 open access research papers in the field of computational linguistics and language technology, the ACL

Information literacy and abstracting: interdisciplinary issues for linguists and information professionals

Directory of Open Access Journals (Sweden)

Tibor Koltay

2010-04-01

Full Text Available Information literacy is a complex phenomenon that requires a multifaceted interdisciplinary approach as it is related to verbal communication, literacy, functional literacy and academic literacy, including issues of plagiarism. It also includes text authoring in a full range of genres, among others abstracts. Abstracting is a well-known act of verbal communication, and abstracts are a genre of written communication. The essence of abstracting is summarizing information making use of critical reading. Abstracting thus can be regarded as one of the instances of exercising information literacy on a higher level. Both information literacy and abstracting are of prime professional interest for linguists (among others in the field of ESP and information professionals.

SSRF-PDM and its full-text retrieval improvement

International Nuclear Information System (INIS)

Tong Xingfan; Deng Huiyu; Li Zhiming

2011-01-01

Project and data management is essential for Shanghai Synchrotron Radiation Facility (SSRF) which is a huge scientific platform for science research and technology development in China. With Product Data Management (PDM) system, SSRF improves its information service greatly. In this paper, we introduce the network structure, configuration modules and client terminals of the PDM system and the improvement in full-text retrieval subsystem, including its algorithms and details of implement in order to optimize the retrieval system.(authors)

Subject Retrieval from Full-Text Databases in the Humanities

Science.gov (United States)

East, John W.

2007-01-01

This paper examines the problems involved in subject retrieval from full-text databases of secondary materials in the humanities. Ten such databases were studied and their search functionality evaluated, focusing on factors such as Boolean operators, document surrogates, limiting by subject area, proximity operators, phrase searching, wildcards,…

Technical abstracts: Mechanical engineering, 1990

International Nuclear Information System (INIS)

Broesius, J.Y.

1991-01-01

This document is a compilation of the published, unclassified abstracts produced by mechanical engineers at Lawrence Livermore National Laboratory (LLNL) during the calendar year 1990. Many abstracts summarize work completed and published in report form. These are UCRL-JC series documents, which include the full text of articles to be published in journals and of papers to be presented at meetings, and UCID reports, which are informal documents. Not all UCIDs contain abstracts: short summaries were generated when abstracts were not included. Technical Abstracts also provides descriptions of those documents assigned to the UCRL-MI (miscellaneous) category. These are generally viewgraphs or photographs presented at meetings. An author index is provided at the back of this volume for cross referencing

Bounded Rationality of Generalized Abstract Fuzzy Economies

Directory of Open Access Journals (Sweden)

Lei Wang

2014-01-01

Full Text Available By using a nonlinear scalarization technique, the bounded rationality model M for generalized abstract fuzzy economies in finite continuous spaces is established. Furthermore, by using the model M, some new theorems for structural stability and robustness to (λ,ϵ-equilibria of generalized abstract fuzzy economies are proved.

Grounding abstractness: Abstract concepts and the activation of the mouth

Directory of Open Access Journals (Sweden)

Anna M Borghi

2016-10-01

Full Text Available One key issue for theories of cognition is how abstract concepts, such as freedom, are represented. According to the WAT (Words As social Tools proposal, abstract concepts activate both sensorimotor and linguistic/social information, and their acquisition modality involves the linguistic experience more than the acquisition of concrete concepts. We report an experiment in which participants were presented with abstract and concrete definitions followed by concrete and abstract target-words. When the definition and the word matched, participants were required to press a key, either with the hand or with the mouth. Response times and accuracy were recorded. As predicted, we found that abstract definitions and abstract words yielded slower responses and more errors compared to concrete definitions and concrete words. More crucially, there was an interaction between the target-words and the effector used to respond (hand, mouth. While responses with the mouth were overall slower, the advantage of the hand over the mouth responses was more marked with concrete than with abstract concepts. The results are in keeping with grounded and embodied theories of cognition and support the WAT proposal, according to which abstract concepts evoke linguistic-social information, hence activate the mouth. The mechanisms underlying the mouth activation with abstract concepts (re-enactment of acquisition experience, or re-explanation of the word meaning, possibly through inner talk are discussed. To our knowledge this is the first behavioral study demonstrating with real words that the advantage of the hand over the mouth is more marked with concrete than with abstract concepts, likely because of the activation of linguistic information with abstract concepts.

Facilitating Full-text Access to Biomedical Literature Using Open Access Resources.

Science.gov (United States)

Kang, Hongyu; Hou, Zhen; Li, Jiao

2015-01-01

Open access (OA) resources and local libraries often have their own literature databases, especially in the field of biomedicine. We have developed a method of linking a local library to a biomedical OA resource facilitating researchers' full-text article access. The method uses a model based on vector space to measure similarities between two articles in local library and OA resources. The method achieved an F-score of 99.61%. This method of article linkage and mapping between local library and OA resources is available for use. Through this work, we have improved the full-text access of the biomedical OA resources.

Evaluating Open-Source Full-Text Search Engines for Matching ICD-10 Codes.

Science.gov (United States)

Jurcău, Daniel-Alexandru; Stoicu-Tivadar, Vasile

2016-01-01

This research presents the results of evaluating multiple free, open-source engines on matching ICD-10 diagnostic codes via full-text searches. The study investigates what it takes to get an accurate match when searching for a specific diagnostic code. For each code the evaluation starts by extracting the words that make up its text and continues with building full-text search queries from the combinations of these words. The queries are then run against all the ICD-10 codes until a match indicates the code in question as a match with the highest relative score. This method identifies the minimum number of words that must be provided in order for the search engines choose the desired entry. The engines analyzed include a popular Java-based full-text search engine, a lightweight engine written in JavaScript which can even execute on the user's browser, and two popular open-source relational database management systems.

Terrestrial ecology in South Africa - project abstracts for 1980-1981

CSIR Research Space (South Africa)

Huntley, BJ

1982-12-01

Full Text Available Abstracts are provided for research projects conducted during 1980-1981 in South African terrestrial ecosystems. The abstracts are arranged alphabetically according to author name and a keyword index is provided....

Improving e-book access via a library-developed full-text search tool.

Science.gov (United States)

Foust, Jill E; Bergen, Phillip; Maxeiner, Gretchen L; Pawlowski, Peter N

2007-01-01

This paper reports on the development of a tool for searching the contents of licensed full-text electronic book (e-book) collections. The Health Sciences Library System (HSLS) provides services to the University of Pittsburgh's medical programs and large academic health system. The HSLS has developed an innovative tool for federated searching of its e-book collections. Built using the XML-based Vivísimo development environment, the tool enables a user to perform a full-text search of over 2,500 titles from the library's seven most highly used e-book collections. From a single "Google-style" query, results are returned as an integrated set of links pointing directly to relevant sections of the full text. Results are also grouped into categories that enable more precise retrieval without reformulation of the search. A heuristic evaluation demonstrated the usability of the tool and a web server log analysis indicated an acceptable level of usage. Based on its success, there are plans to increase the number of online book collections searched. This library's first foray into federated searching has produced an effective tool for searching across large collections of full-text e-books and has provided a good foundation for the development of other library-based federated searching products.

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.

Science.gov (United States)

Cejuela, Juan Miguel; McQuilton, Peter; Ponting, Laura; Marygold, Steven J; Stefancsik, Raymund; Millburn, Gillian H; Rost, Burkhard

2014-01-01

The breadth and depth of biomedical literature are increasing year upon year. To keep abreast of these increases, FlyBase, a database for Drosophila genomic and genetic information, is constantly exploring new ways to mine the published literature to increase the efficiency and accuracy of manual curation and to automate some aspects, such as triaging and entity extraction. Toward this end, we present the 'tagtog' system, a web-based annotation framework that can be used to mark up biological entities (such as genes) and concepts (such as Gene Ontology terms) in full-text articles. tagtog leverages manual user annotation in combination with automatic machine-learned annotation to provide accurate identification of gene symbols and gene names. As part of the BioCreative IV Interactive Annotation Task, FlyBase has used tagtog to identify and extract mentions of Drosophila melanogaster gene symbols and names in full-text biomedical articles from the PLOS stable of journals. We show here the results of three experiments with different sized corpora and assess gene recognition performance and curation speed. We conclude that tagtog-named entity recognition improves with a larger corpus and that tagtog-assisted curation is quicker than manual curation. DATABASE URL: www.tagtog.net, www.flybase.org.

Improving e-book access via a library-developed full-text search tool*

Science.gov (United States)

Foust, Jill E.; Bergen, Phillip; Maxeiner, Gretchen L.; Pawlowski, Peter N.

2007-01-01

Purpose: This paper reports on the development of a tool for searching the contents of licensed full-text electronic book (e-book) collections. Setting: The Health Sciences Library System (HSLS) provides services to the University of Pittsburgh's medical programs and large academic health system. Brief Description: The HSLS has developed an innovative tool for federated searching of its e-book collections. Built using the XML-based Vivísimo development environment, the tool enables a user to perform a full-text search of over 2,500 titles from the library's seven most highly used e-book collections. From a single “Google-style” query, results are returned as an integrated set of links pointing directly to relevant sections of the full text. Results are also grouped into categories that enable more precise retrieval without reformulation of the search. Results/Evaluation: A heuristic evaluation demonstrated the usability of the tool and a web server log analysis indicated an acceptable level of usage. Based on its success, there are plans to increase the number of online book collections searched. Conclusion: This library's first foray into federated searching has produced an effective tool for searching across large collections of full-text e-books and has provided a good foundation for the development of other library-based federated searching products. PMID:17252065

The value of Institute of Human Virology meeting abstracts and beyond

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Jeang Kuan-Teh

2005-12-01

Full Text Available Abstract This month Retrovirology publishes the meeting abstracts from the 10th annual Institute of Human Virology conference held August 29th to September 2nd, 2005 in Baltimore, Maryland, USA. In this editorial, the rationale for publishing meeting abstracts is discussed.

Efficient extraction of protein-protein interactions from full-text articles.

Science.gov (United States)

Hakenberg, Jörg; Leaman, Robert; Vo, Nguyen Ha; Jonnalagadda, Siddhartha; Sullivan, Ryan; Miller, Christopher; Tari, Luis; Baral, Chitta; Gonzalez, Graciela

2010-01-01

Proteins and their interactions govern virtually all cellular processes, such as regulation, signaling, metabolism, and structure. Most experimental findings pertaining to such interactions are discussed in research papers, which, in turn, get curated by protein interaction databases. Authors, editors, and publishers benefit from efforts to alleviate the tasks of searching for relevant papers, evidence for physical interactions, and proper identifiers for each protein involved. The BioCreative II.5 community challenge addressed these tasks in a competition-style assessment to evaluate and compare different methodologies, to make aware of the increasing accuracy of automated methods, and to guide future implementations. In this paper, we present our approaches for protein-named entity recognition, including normalization, and for extraction of protein-protein interactions from full text. Our overall goal is to identify efficient individual components, and we compare various compositions to handle a single full-text article in between 10 seconds and 2 minutes. We propose strategies to transfer document-level annotations to the sentence-level, which allows for the creation of a more fine-grained training corpus; we use this corpus to automatically derive around 5,000 patterns. We rank sentences by relevance to the task of finding novel interactions with physical evidence, using a sentence classifier built from this training corpus. Heuristics for paraphrasing sentences help to further remove unnecessary information that might interfere with patterns, such as additional adjectives, clauses, or bracketed expressions. In BioCreative II.5, we achieved an f-score of 22 percent for finding protein interactions, and 43 percent for mapping proteins to UniProt IDs; disregarding species, f-scores are 30 percent and 55 percent, respectively. On average, our best-performing setup required around 2 minutes per full text. All data and pattern sets as well as Java classes that

Automated Predicate Abstraction for Real-Time Models

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Bahareh Badban

2009-11-01

Full Text Available We present a technique designed to automatically compute predicate abstractions for dense real-timed models represented as networks of timed automata. We use the CIPM algorithm in our previous work which computes new invariants for timed automata control locations and prunes the model, to compute a predicate abstraction of the model. We do so by taking information regarding control locations and their newly computed invariants into account.

Completeness of Lyapunov Abstraction

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Rafael Wisniewski

2013-08-01

Full Text Available In this work, we continue our study on discrete abstractions of dynamical systems. To this end, we use a family of partitioning functions to generate an abstraction. The intersection of sub-level sets of the partitioning functions defines cells, which are regarded as discrete objects. The union of cells makes up the state space of the dynamical systems. Our construction gives rise to a combinatorial object - a timed automaton. We examine sound and complete abstractions. An abstraction is said to be sound when the flow of the time automata covers the flow lines of the dynamical systems. If the dynamics of the dynamical system and the time automaton are equivalent, the abstraction is complete. The commonly accepted paradigm for partitioning functions is that they ought to be transversal to the studied vector field. We show that there is no complete partitioning with transversal functions, even for particular dynamical systems whose critical sets are isolated critical points. Therefore, we allow the directional derivative along the vector field to be non-positive in this work. This considerably complicates the abstraction technique. For understanding dynamical systems, it is vital to study stable and unstable manifolds and their intersections. These objects appear naturally in this work. Indeed, we show that for an abstraction to be complete, the set of critical points of an abstraction function shall contain either the stable or unstable manifold of the dynamical system.

PubstractHelper: A Web-based Text-Mining Tool for Marking Sentences in Abstracts from PubMed Using Multiple User-Defined Keywords.

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Chen, Chou-Cheng; Ho, Chung-Liang

2014-01-01

While a huge amount of information about biological literature can be obtained by searching the PubMed database, reading through all the titles and abstracts resulting from such a search for useful information is inefficient. Text mining makes it possible to increase this efficiency. Some websites use text mining to gather information from the PubMed database; however, they are database-oriented, using pre-defined search keywords while lacking a query interface for user-defined search inputs. We present the PubMed Abstract Reading Helper (PubstractHelper) website which combines text mining and reading assistance for an efficient PubMed search. PubstractHelper can accept a maximum of ten groups of keywords, within each group containing up to ten keywords. The principle behind the text-mining function of PubstractHelper is that keywords contained in the same sentence are likely to be related. PubstractHelper highlights sentences with co-occurring keywords in different colors. The user can download the PMID and the abstracts with color markings to be reviewed later. The PubstractHelper website can help users to identify relevant publications based on the presence of related keywords, which should be a handy tool for their research. http://bio.yungyun.com.tw/ATM/PubstractHelper.aspx and http://holab.med.ncku.edu.tw/ATM/PubstractHelper.aspx.

Final program and book of abstracts

International Nuclear Information System (INIS)

Alfassi, Z.; German, U.; Goldstein, M.; Weinstein, M.

2004-01-01

The Israel Nuclear Societies consists of the following individual societies: The Israel Nuclear Society, Israel Society of Radiation Protection, Israel Society of Medical Physics and Israel Society of Nuclear Medicine. The annual meeting book of abstracts contains the full text of the presentations in the scopes of each participating society

Reading to learn experimental practice: The role of text and firsthand experience in the acquisition of an abstract science principle

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Richmond, Erica Kesin

2008-10-01

From the onset of schooling, texts are used as important educational tools. In the primary years, they are integral to learning how to decode and develop fluency. In the later elementary years, they are often essential to the acquisition of academic content. Unfortunately, many children experience difficulties with this process, which is due in large part to their unfamiliarity with the genre of academic texts. The articles presented in this dissertation share an underlying theme of how to develop children's ability to comprehend and learn from academic, and specifically, non-narrative texts. The first article reviews research on the development of non-narrative discourse to elucidate the linguistic precursors to non-narrative text comprehension. The second and third articles draw from an empirical study that investigated the best way to integrate text, manipulation, and first-hand experience for children's acquisition and application of an abstract scientific principle. The scientific principle introduced in the study was the Control of Variables Strategy (CVS), a fundamental idea underlying scientific reasoning and a strategy for designing unconfounded experiments. Eight grade 4 classes participated in the study (N = 129), in one of three conditions: (a) read procedural text and manipulate experimental materials, (b) listen to procedural text and manipulate experimental materials, or (c) read procedural text with no opportunity to manipulate experimental materials. Findings from the study indicate that children who had the opportunity to read and manipulate materials were most effective at applying the strategy to designing and justifying unconfounded experiments, and evaluating written and physical experimental designs; however, there was no effect of instructional condition on a written assessment of evaluating familiar and unfamiliar experimental designs one week after the intervention. These results suggest that the acquisition and application of an abstract

DENOTATIVE ORIGINS OF ABSTRACT IMAGES IN LINGUISTIC EXPERIMENT

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Elina, E.

2017-03-01

Full Text Available The article discusses the refusal from denotation (the subject, as the basic principle of abstract images, and semiotic problems arising in connection with this principle: how to solve the contradiction between the pointlessness and iconic nature of the image? Is it correct in the absence of denotation to recognize abstract representation of a single-level entity? The solution is proposed to decide these questions with the help of a psycholinguistic experiment in which the verbal interpretation of abstract images made by both experienced and “naive” audience-recipients demonstrates the objectivity of perception of denotative “traces” and the presence of denotative invariant in an abstract form.

Early Career Researchers Demand Full-text and Rely on Google to Find Scholarly Sources

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Richard Hayman

2017-12-01

Full Text Available A Review of: Nicholas, D., Boukacem-Zeghmouri, C., Rodríguez-Bravo, B., Xu, J., Watkinson, A., Abrizah, A., Herman, E., & Świgoń, M. (2017. Where and how early career researchers find scholarly information. Learned Publishing, 30(1, 19-29. http://dx.doi.org/10.1002/leap.1087 Abstract Objective – To examine the attitudes and information behaviours of early career researchers (ECRs when locating scholarly information. Design – Qualitative longitudinal study. Setting – Research participants from the United Kingdom, United States of America, China, France, Malaysia, Poland, and Spain. Subjects – A total 116 participants from various disciplines, aged 35 and younger, who were holding or had previously held a research position, but not in a tenured position. All participants held a doctorate or were in the process of earning one. Methods – Using structured interviews of 60-90 minutes, researchers asked 60 questions of each participant via face-to-face, Skype, or telephone interviews. The interview format and questions were formed via focus groups. Main Results – As part of a longitudinal project, results reported are limited to the first year of the study, and focused on three primary questions identified by the authors: where do ECRs find scholarly information, whether they use their smartphones to locate and read scholarly information, and what social media do they use to find scholarly information. Researchers describe how ECRs themselves interpreted the phrase scholarly information to primarily mean journal articles, while the researchers themselves had a much expanded definition to include professional and “scholarly contacts, ideas, and data” (p. 22. This research shows that Google and Google Scholar are widely used by ECRs for locating scholarly information regardless of discipline, language, or geography. Their analysis by country points to currency and the combined breadth-and-depth search experience that Google provides as

South African Association of Veterinary Technologists : congress abstracts

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Editorial Office

2010-05-01

Full Text Available The following are abstracts of papers and posters presented at the 'Back to Basics Congress' of the South African Association of Veterinary Technologists (SAAVT, 15-16 September 2009, Batter Boys, Pretoria, South Africa.

Abstract algebra

CERN Document Server

Garrett, Paul B

2007-01-01

Designed for an advanced undergraduate- or graduate-level course, Abstract Algebra provides an example-oriented, less heavily symbolic approach to abstract algebra. The text emphasizes specifics such as basic number theory, polynomials, finite fields, as well as linear and multilinear algebra. This classroom-tested, how-to manual takes a more narrative approach than the stiff formalism of many other textbooks, presenting coherent storylines to convey crucial ideas in a student-friendly, accessible manner. An unusual feature of the text is the systematic characterization of objects by universal

Preparing College Students To Search Full-Text Databases: Is Instruction Necessary?

Science.gov (United States)

Riley, Cheryl; Wales, Barbara

Full-text databases allow Central Missouri State University's clients to access some of the serials that libraries have had to cancel due to escalating subscription costs; EbscoHost, the subject of this study, is one such database. The database is available free to all Missouri residents. A survey was designed consisting of 21 questions intended…

The Complexity of Abstract Machines

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Beniamino Accattoli

2017-01-01

Full Text Available The lambda-calculus is a peculiar computational model whose definition does not come with a notion of machine. Unsurprisingly, implementations of the lambda-calculus have been studied for decades. Abstract machines are implementations schema for fixed evaluation strategies that are a compromise between theory and practice: they are concrete enough to provide a notion of machine and abstract enough to avoid the many intricacies of actual implementations. There is an extensive literature about abstract machines for the lambda-calculus, and yet—quite mysteriously—the efficiency of these machines with respect to the strategy that they implement has almost never been studied. This paper provides an unusual introduction to abstract machines, based on the complexity of their overhead with respect to the length of the implemented strategies. It is conceived to be a tutorial, focusing on the case study of implementing the weak head (call-by-name strategy, and yet it is an original re-elaboration of known results. Moreover, some of the observation contained here never appeared in print before.

An exploratory analysis of PubMed's free full-text limit on citation retrieval for clinical questions.

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Krieger, Mary M; Richter, Randy R; Austin, Tricia M

2008-10-01

The research sought to determine (1) how use of the PubMed free full-text (FFT) limit affects citation retrieval and (2) how use of the FFT limit impacts the types of articles and levels of evidence retrieved. Four clinical questions based on a research agenda for physical therapy were searched in PubMed both with and without the use of the FFT limit. Retrieved citations were examined for relevancy to each question. Abstracts of relevant citations were reviewed to determine the types of articles and levels of evidence. Descriptive analysis was used to compare the total number of citations, number of relevant citations, types of articles, and levels of evidence both with and without the use of the FFT limit. Across all 4 questions, the FFT limit reduced the number of citations to 11.1% of the total number of citations retrieved without the FFT limit. Additionally, high-quality evidence such as systematic reviews and randomized controlled trials were missed when the FFT limit was used. Health sciences librarians play a key role in educating users about the potential impact the FFT limit has on the number of citations, types of articles, and levels of evidence retrieved.

Trends in HIV Terminology: Text Mining and Data Visualization Assessment of International AIDS Conference Abstracts Over 25 Years.

Science.gov (United States)

Dancy-Scott, Nicole; Dutcher, Gale A; Keselman, Alla; Hochstein, Colette; Copty, Christina; Ben-Senia, Diane; Rajan, Sampada; Asencio, Maria Guadalupe; Choi, Jason Jongwon

2018-05-04

The language encompassing health conditions can also influence behaviors that affect health outcomes. Few published quantitative studies have been conducted that evaluate HIV-related terminology changes over time. To expand this research, this study included an analysis of a dataset of abstracts presented at the International AIDS Conference (IAC) from 1989 to 2014. These abstracts reflect the global response to HIV over 25 years. Two powerful methodologies were used to evaluate the dataset: text mining to convert the unstructured information into structured data for analysis and data visualization to represent the data visually to assess trends. The purpose of this project was to evaluate the evolving use of HIV-related language in abstracts presented at the IAC from 1989 to 2014. Over 80,000 abstracts were obtained from the International AIDS Society and imported into a Microsoft SQL Server database for data processing and text mining analyses. A text mining module within the KNIME Analytics Platform, an open source software, was then used to mine the partially processed data to create a terminology corpus of key HIV terms. Subject matter experts grouped the terms into categories. Tableau, a data visualization software, was used to visualize the frequency metrics associated with the terms as line graphs and word clouds. The visualized dashboards were reviewed to discern changes in terminology use across IAC years. The major findings identify trends in HIV-related terminology over 25 years. The term "AIDS epidemic" was dominantly used from 1989 to 1991 and then declined in use. In contrast, use of the term "HIV epidemic" increased through 2014. Beginning in the mid-1990s, the term "treatment experienced" appeared with increasing frequency in the abstracts. Use of terms identifying individuals as "carriers or victims" of HIV rarely appeared after 2008. Use of the terms "HIV positive" and "HIV infected" peaked in the early-1990s and then declined in use. The terms

Full-text automated detection of surgical site infections secondary to neurosurgery in Rennes, France.

Science.gov (United States)

Campillo-Gimenez, Boris; Garcelon, Nicolas; Jarno, Pascal; Chapplain, Jean Marc; Cuggia, Marc

2013-01-01

The surveillance of Surgical Site Infections (SSI) contributes to the management of risk in French hospitals. Manual identification of infections is costly, time-consuming and limits the promotion of preventive procedures by the dedicated teams. The introduction of alternative methods using automated detection strategies is promising to improve this surveillance. The present study describes an automated detection strategy for SSI in neurosurgery, based on textual analysis of medical reports stored in a clinical data warehouse. The method consists firstly, of enrichment and concept extraction from full-text reports using NOMINDEX, and secondly, text similarity measurement using a vector space model. The text detection was compared to the conventional strategy based on self-declaration and to the automated detection using the diagnosis-related group database. The text-mining approach showed the best detection accuracy, with recall and precision equal to 92% and 40% respectively, and confirmed the interest of reusing full-text medical reports to perform automated detection of SSI.

Abstract generalized vector quasi-equilibrium problems in noncompact Hadamard manifolds

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Haishu Lu

2017-05-01

Full Text Available Abstract This paper deals with the abstract generalized vector quasi-equilibrium problem in noncompact Hadamard manifolds. We prove the existence of solutions to the abstract generalized vector quasi-equilibrium problem under suitable conditions and provide applications to an abstract vector quasi-equilibrium problem, a generalized scalar equilibrium problem, a scalar equilibrium problem, and a perturbed saddle point problem. Finally, as an application of the existence of solutions to the generalized scalar equilibrium problem, we obtain a weakly mixed variational inequality and two mixed variational inequalities. The results presented in this paper unify and generalize many known results in the literature.

Abstracts – eine facettenreiche Textsorte der Wissenschaft

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Ines Busch-Lauer

2012-01-01

Full Text Available Der Beitrag beschreibt die Relevanz der informationsverdichtenden Textsorte Abstract in der Wissenschaftskommunikation. Im Mittelpunkt stehen die Definition, die Klassifikation und die Struktur sowie ausgewählte Merkmale dieser Textsorte.Im ersten Teil des Beitrags werden die unterschiedlichen Arten von Abstracts anhand von Textbeispielen aus der Linguistik, der Medizin und den Technikwissenschaften expliziert. Im zweiten Teil untersucht der Beitrag anhand von Abstracts, die von deutschen Studierenden der Technik- und Ingenieurwissenschaften im Rahmen ihrer fachbezogenen Englischausbildung verfasst wurden, inwieweit die textsortenimmanenten Merkmale auch von Lernenden in der Textproduktion in der Fremdsprache umgesetzt wurden. Mit dieser qualitativ beschreibenden Untersuchung trägt die Studie zur kontrastiven Fachtextsortenbeschreibung und andererseits als Praxisbericht zur Vermittlung von Textsorten im fachbezogenen Fremdsprachenunterricht an Hochschulen bei.

Understanding disciplinary vocabularies using a full-text enabled domain-independent term extraction approach.

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Yan, Erjia; Williams, Jake; Chen, Zheng

2017-01-01

Publication metadata help deliver rich analyses of scholarly communication. However, research concepts and ideas are more effectively expressed through unstructured fields such as full texts. Thus, the goals of this paper are to employ a full-text enabled method to extract terms relevant to disciplinary vocabularies, and through them, to understand the relationships between disciplines. This paper uses an efficient, domain-independent term extraction method to extract disciplinary vocabularies from a large multidisciplinary corpus of PLoS ONE publications. It finds a power-law pattern in the frequency distributions of terms present in each discipline, indicating a semantic richness potentially sufficient for further study and advanced analysis. The salient relationships amongst these vocabularies become apparent in application of a principal component analysis. For example, Mathematics and Computer and Information Sciences were found to have similar vocabulary use patterns along with Engineering and Physics; while Chemistry and the Social Sciences were found to exhibit contrasting vocabulary use patterns along with the Earth Sciences and Chemistry. These results have implications to studies of scholarly communication as scholars attempt to identify the epistemological cultures of disciplines, and as a full text-based methodology could lead to machine learning applications in the automated classification of scholarly work according to disciplinary vocabularies.

Parameterized Dataflow (Extended Abstract

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Dominic Duggan

2016-10-01

Full Text Available Dataflow networks have application in various forms of stream processing, for example for parallel processing of multimedia data. The description of dataflow graphs, including their firing behavior, is typically non-compositional and not amenable to separate compilation. This article considers a dataflow language with a type and effect system that captures the firing behavior of actors. This system allows definitions to abstract over actor firing rates, supporting the definition and safe composition of actor definitions where firing rates are not instantiated until a dataflow graph is launched.

Interdisciplinary perspectives on abstracts for information retrieval

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Soon Keng Chan

2004-10-01

Full Text Available The paper examines the abstract genre from the perspectives of English for Specific Purposes (ESP practitioners and information professionals. It aims to determine specific interdisciplinary interests in the abstract, and to explore areas of collaboration in terms of research and pedagogical practices. A focus group (FG comprising information professionals from the Division of Information Studies, Nanyang Technological University, Singapore, convened for a discussion on the subject of abstracts and abstracting. Two major issues that have significant implications for ESP practices emerged during the discussion. While differences in terms of approach to and objectives of the abstract genre are apparent between information professionals and language professionals, the demands for specific cognitive processes involved in abstracting proved to be similar. This area of similarity provides grounds for awareness raising and collaboration between the two disciplines. While ESP practitioners need to consider adding the dimension of information science to the rhetorical and linguistic scaffolding that they have been providing to novice-writers, information professionals can contribute useful insights about the qualities of abstracts that have the greatest impact in meeting the end-users' needs in information search.

Abstracting Concepts and Methods.

Science.gov (United States)

Borko, Harold; Bernier, Charles L.

This text provides a complete discussion of abstracts--their history, production, organization, publication--and of indexing. Instructions for abstracting are outlined, and standards and criteria for abstracting are stated. Management, automation, and personnel are discussed in terms of possible economies that can be derived from the introduction…

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2009-07-20

Jul 20, 2009 ... Table 1: Influenza pandemics of the 20th and 21st century. Name of ... could be responsible for the rapid human -to- human transmission [21]. Using evolutionary analysis to estimate the timescale of the origins, Smith and his research team from The. University of ... The biology of influenza A viruses is very.

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–60 years, in Al-Jala Women Hospital in. Tripoli, Libya. Haemoglobin concentration was measured using an automated haematology analyzer. ... i.e. by relatives and friends of the patient needing blood. A .... More attention should be given.

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2009-01-11

Jan 11, 2009 ... battery, retail for approximately £30GBP although bulk buying ..... care to store them carefully. Electrode costs .... nerve stimulation does not relieve in labour pain: updated ... (Online : Update Software), 2003(3): p. CD003222.

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Case presentation. A seventy five year old Libyan man was seen in the urology department of Tripoli Medical Centre, Tripoli, Libya with six month history of left loin pain. The patient noted a mass in the left loin two days before he was assessed in the hospital. Also he started to vomit. There was no history of haematuria.

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impact of using a robotic dispensing machine in community pharmacies was gathered using a structured questionnaire and analysed in ... dispensing time was also shorter and staff satisfaction increased. ... reference customers who were using a ROWA robotic .... Costs situation Purchase price Stock value Personnel costs.

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release of intracellular myocyte components. Clinical sequelae to rhabdomyolysis include hypovolemia, hyperkalemia, metabolic acidosis and acute renal failure which is the most serious complication. Renal failure is caused by renal vasoconstriction, myoglobin and heme protein toxicity. Usual explanations of the cause of.

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Original Article. Effects of Gender and Seasonal Variation on the Prevalence of. Bacterial Septicaemia Among Young Children in Benin City,. Nigeria. Omoregie R1,2, Egbe CA2, Ogefere HO1,3, Igbarumah I2, Omijie RE2. 1School of Medical Laboratory Sciences, 2Department of Medical Microbiology, University of Benin.

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healing process when wound tensile strength is very low or absent (days 0-30). It is during this time, when .... and two (4.5%) were supraumbilical. Table 1: Age distribution and the outcome of surgery in the 44 women with incisional hernia. Variable. Frequency. Percentage. Age. 60. 9. 15. 10. 6. 4.

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fishermen were enrolled at three Marine stations in Basra, Iraq. Demographic data, types .... that are used to sting and kill their prey or for defense. ... cardiotoxic, and dermatonecrotic toxins [1,6]. Figure 3: 4 ... May last a few weeks. The hands ...

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from Turkey, Mexico, Brazil, USA, and Spain determined some criteria in favor ... female gender, and higher level of education. [9-14]. ... teachers and/or workers in that facility. Then a random ..... Psychosocial profile in favor of organ donation.

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1Department of Surgery, Obafemi Awolowo, 2Department of Community Health,. Obafemi ... the use of mesh, either open or laparoscopic [15,21], but this ... recurrence. METHODS AND PATIENTS .... TAH-BSO* = Total abdominal hysterectomy and bilateral salpingoophorectomy. Recurrent I.H. # = Recurrent inguinal hernia.

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Figure 2 axial CT section with contrast media showing extension of lesion. Figure 3 Photomicrograph revealing many dilated cavernous lymphatic channels filled with eosinophilic coagulum. (Haematoxylin and Eosin section Orginal magnification 40 X). Discussion. Cystic hygroma, known as cystic lymphangioma is a.

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receptor; TNF-α: Tumor Necrosis Factor–alpha; TGF-β1: transforming growth factor-β1. INTRODUCTION .... hormones that mediate inflammatory and immune responses in a ..... score, lactate, and base deficit), as well as treatment with agents ...

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2009-05-03

May 3, 2009 ... The patient made an uneventful recovery. The final histopathology report was consistent with metastatic renal carcinoma. The patient was referred to the oncologist but unfortunately defaulted further treatment. . She is currently well and disease free 24 months after metastatectomy. Electronic PDF security ...

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consideration the needs of the current generation without risking ability of future generations to attain their needs. Evaluation of .... If an element or a number such as x and a collection such as A ... defined as definitive and accurate. This also ...

Nursing identity and patient-centredness in scholarly health services research: a computational text analysis of PubMed abstracts 1986-2013.

Science.gov (United States)

Bell, Erica; Campbell, Steve; Goldberg, Lynette R

2015-01-22

The most important and contested element of nursing identity may be the patient-centredness of nursing, though this concept is not well-treated in the nursing identity literature. More conceptually-based mapping of nursing identity constructs are needed to help nurses shape their identity. The field of computational text analytics offers new opportunities to scrutinise how growing disciplines such as health services research construct nursing identity. This paper maps the conceptual content of scholarly health services research in PubMed as it relates to the patient-centeredness of nursing. Computational text analytics software was used to analyse all health services abstracts in the database PubMed since 1986. Abstracts were treated as indicative of the content of health services research. The database PubMed was searched for all research papers using the term "service" or "services" in the abstract or keywords for the period 01/01/1986 to 30/06/2013. A total of 234,926 abstracts were obtained. Leximancer software was used in 1) mapping of 4,144,458 instances of 107 concepts; 2) analysis of 106 paired concept co-occurrences for the nursing concept; and 3) sentiment analysis of the nursing concept versus patient, family and community concepts, and clinical concepts. Nursing is constructed within quality assurance or service implementation or workforce development concepts. It is relatively disconnected from patient, family or community care concepts. For those who agree that patient-centredness should be a part of nursing identity in practice, this study suggests that there is a need for development of health services research into both the nature of the caring construct in nursing identity and its expression in practice. More fundamentally, the study raises questions about whether health services research cultures even value the politically popular idea of nurses as patient-centred caregivers and whether they should.

Design of an On-Line Query Language for Full Text Patent Search.

Science.gov (United States)

Glantz, Richard S.

The design of an English-like query language and an interactive computer environment for searching the full text of the U.S. patent collection are discussed. Special attention is paid to achieving a transparent user interface, to providing extremely broad search capabilities (including nested substitution classes, Kleene star events, and domain…

Evaluating Data Abstraction Assistant, a novel software application for data abstraction during systematic reviews: protocol for a randomized controlled trial

Directory of Open Access Journals (Sweden)

Ian J. Saldanha

2016-11-01

Full Text Available Abstract Background Data abstraction, a critical systematic review step, is time-consuming and prone to errors. Current standards for approaches to data abstraction rest on a weak evidence base. We developed the Data Abstraction Assistant (DAA, a novel software application designed to facilitate the abstraction process by allowing users to (1 view study article PDFs juxtaposed to electronic data abstraction forms linked to a data abstraction system, (2 highlight (or “pin” the location of the text in the PDF, and (3 copy relevant text from the PDF into the form. We describe the design of a randomized controlled trial (RCT that compares the relative effectiveness of (A DAA-facilitated single abstraction plus verification by a second person, (B traditional (non-DAA-facilitated single abstraction plus verification by a second person, and (C traditional independent dual abstraction plus adjudication to ascertain the accuracy and efficiency of abstraction. Methods This is an online, randomized, three-arm, crossover trial. We will enroll 24 pairs of abstractors (i.e., sample size is 48 participants, each pair comprising one less and one more experienced abstractor. Pairs will be randomized to abstract data from six articles, two under each of the three approaches. Abstractors will complete pre-tested data abstraction forms using the Systematic Review Data Repository (SRDR, an online data abstraction system. The primary outcomes are (1 proportion of data items abstracted that constitute an error (compared with an answer key and (2 total time taken to complete abstraction (by two abstractors in the pair, including verification and/or adjudication. Discussion The DAA trial uses a practical design to test a novel software application as a tool to help improve the accuracy and efficiency of the data abstraction process during systematic reviews. Findings from the DAA trial will provide much-needed evidence to strengthen current recommendations for data

10. National Nuclear Science and Technologies Congress Proceedings Full Texts Volume 1

International Nuclear Information System (INIS)

2009-01-01

X. National Nuclear Science and Technologies Congress was held on 6-9 October 2009 in Mugla, Turkey in the course of collaborative organization undertaken by Turkish Atomic Energy Authority, Mugla University and Sitki Kocman Foundation. This first volume of Proceedings Book contains 75 submitted presentations and 36 of them are full texts on applications of nuclear techniques.

TEXT DEIXIS IN NARRATIVE SEQUENCES

Directory of Open Access Journals (Sweden)

Josep Rivera

2007-06-01

Full Text Available This study looks at demonstrative descriptions, regarding them as text-deictic procedures which contribute to weave discourse reference. Text deixis is thought of as a metaphorical referential device which maps the ground of utterance onto the text itself. Demonstrative expressions with textual antecedent-triggers, considered as the most important text-deictic units, are identified in a narrative corpus consisting of J. M. Barrie’s Peter Pan and its translation into Catalan. Some linguistic and discourse variables related to DemNPs are analysed to characterise adequately text deixis. It is shown that this referential device is usually combined with abstract nouns, thus categorising and encapsulating (non-nominal complex discourse entities as nouns, while performing a referential cohesive function by means of the text deixis + general noun type of lexical cohesion.

Minimalism in architecture: Abstract conceptualization of architecture

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Vasilski Dragana

2015-01-01

Full Text Available Minimalism in architecture contains the idea of the minimum as a leading creative tend to be considered and interpreted in working through phenomena of empathy and abstraction. In the Western culture, the root of this idea is found in empathy of Wilhelm Worringer and abstraction of Kasimir Malevich. In his dissertation, 'Abstraction and Empathy' Worringer presented his thesis on the psychology of style through which he explained the two opposing basic forms: abstraction and empathy. His conclusion on empathy as a psychological basis of observation expression is significant due to the verbal congruence with contemporary minimalist expression. His intuition was enhenced furthermore by figure of Malevich. Abstraction, as an expression of inner unfettered inspiration, has played a crucial role in the development of modern art and architecture of the twentieth century. Abstraction, which is one of the basic methods of learning in psychology (separating relevant from irrelevant features, Carl Jung is used to discover ideas. Minimalism in architecture emphasizes the level of abstraction to which the individual functions are reduced. Different types of abstraction are present: in the form as well as function of the basic elements: walls and windows. The case study is an example of Sou Fujimoto who is unequivocal in its commitment to the autonomy of abstract conceptualization of architecture.

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

Science.gov (United States)

Krallinger, Martin; Vazquez, Miguel; Leitner, Florian; Salgado, David; Chatr-Aryamontri, Andrew; Winter, Andrew; Perfetto, Livia; Briganti, Leonardo; Licata, Luana; Iannuccelli, Marta; Castagnoli, Luisa; Cesareni, Gianni; Tyers, Mike; Schneider, Gerold; Rinaldi, Fabio; Leaman, Robert; Gonzalez, Graciela; Matos, Sergio; Kim, Sun; Wilbur, W John; Rocha, Luis; Shatkay, Hagit; Tendulkar, Ashish V; Agarwal, Shashank; Liu, Feifan; Wang, Xinglong; Rak, Rafal; Noto, Keith; Elkan, Charles; Lu, Zhiyong; Dogan, Rezarta Islamaj; Fontaine, Jean-Fred; Andrade-Navarro, Miguel A; Valencia, Alfonso

2011-10-03

Determining usefulness of biomedical text mining systems requires realistic task definition and data selection criteria without artificial constraints, measuring performance aspects that go beyond traditional metrics. The BioCreative III Protein-Protein Interaction (PPI) tasks were motivated by such considerations, trying to address aspects including how the end user would oversee the generated output, for instance by providing ranked results, textual evidence for human interpretation or measuring time savings by using automated systems. Detecting articles describing complex biological events like PPIs was addressed in the Article Classification Task (ACT), where participants were asked to implement tools for detecting PPI-describing abstracts. Therefore the BCIII-ACT corpus was provided, which includes a training, development and test set of over 12,000 PPI relevant and non-relevant PubMed abstracts labeled manually by domain experts and recording also the human classification times. The Interaction Method Task (IMT) went beyond abstracts and required mining for associations between more than 3,500 full text articles and interaction detection method ontology concepts that had been applied to detect the PPIs reported in them. A total of 11 teams participated in at least one of the two PPI tasks (10 in ACT and 8 in the IMT) and a total of 62 persons were involved either as participants or in preparing data sets/evaluating these tasks. Per task, each team was allowed to submit five runs offline and another five online via the BioCreative Meta-Server. From the 52 runs submitted for the ACT, the highest Matthew's Correlation Coefficient (MCC) score measured was 0.55 at an accuracy of 89% and the best AUC iP/R was 68%. Most ACT teams explored machine learning methods, some of them also used lexical resources like MeSH terms, PSI-MI concepts or particular lists of verbs and nouns, some integrated NER approaches. For the IMT, a total of 42 runs were evaluated by comparing

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

Science.gov (United States)

2011-01-01

Background Determining usefulness of biomedical text mining systems requires realistic task definition and data selection criteria without artificial constraints, measuring performance aspects that go beyond traditional metrics. The BioCreative III Protein-Protein Interaction (PPI) tasks were motivated by such considerations, trying to address aspects including how the end user would oversee the generated output, for instance by providing ranked results, textual evidence for human interpretation or measuring time savings by using automated systems. Detecting articles describing complex biological events like PPIs was addressed in the Article Classification Task (ACT), where participants were asked to implement tools for detecting PPI-describing abstracts. Therefore the BCIII-ACT corpus was provided, which includes a training, development and test set of over 12,000 PPI relevant and non-relevant PubMed abstracts labeled manually by domain experts and recording also the human classification times. The Interaction Method Task (IMT) went beyond abstracts and required mining for associations between more than 3,500 full text articles and interaction detection method ontology concepts that had been applied to detect the PPIs reported in them. Results A total of 11 teams participated in at least one of the two PPI tasks (10 in ACT and 8 in the IMT) and a total of 62 persons were involved either as participants or in preparing data sets/evaluating these tasks. Per task, each team was allowed to submit five runs offline and another five online via the BioCreative Meta-Server. From the 52 runs submitted for the ACT, the highest Matthew's Correlation Coefficient (MCC) score measured was 0.55 at an accuracy of 89% and the best AUC iP/R was 68%. Most ACT teams explored machine learning methods, some of them also used lexical resources like MeSH terms, PSI-MI concepts or particular lists of verbs and nouns, some integrated NER approaches. For the IMT, a total of 42 runs were

Writing business research article abstracts: A genre approach

Directory of Open Access Journals (Sweden)

Carmen Piqué-Noguera

2012-10-01

Full Text Available A great deal has been published about oral and written genres in business (e.g., letters, research articles, oral presentations, etc., and less attention has been paid to business research article abstracts as a written genre, as many experts would argue. This research intends to raise rhetorical awareness about the role of abstracts in today’s academic world. To this effect, the abstracts of two official publications of the Association of Business Communication, Journal of Business Communication and Business Communication Quarterly, have been analyzed and compared in terms of structure and content according to models published in the specialized literature. The results show an irregular and inconsistent presentation of abstracts, a good number of them following no set pattern and thus lacking in important information for researchers. These findings suggest, first of all, that abstracts have a specific mission to fulfil and should not be disregarded; and, secondly, that journal guidelines for authors should be more explicit in their instructions on how to write and structure abstracts.

A text-mining system for extracting metabolic reactions from full-text articles.

Science.gov (United States)

Czarnecki, Jan; Nobeli, Irene; Smith, Adrian M; Shepherd, Adrian J

2012-07-23

Increasingly biological text mining research is focusing on the extraction of complex relationships relevant to the construction and curation of biological networks and pathways. However, one important category of pathway - metabolic pathways - has been largely neglected.Here we present a relatively simple method for extracting metabolic reaction information from free text that scores different permutations of assigned entities (enzymes and metabolites) within a given sentence based on the presence and location of stemmed keywords. This method extends an approach that has proved effective in the context of the extraction of protein-protein interactions. When evaluated on a set of manually-curated metabolic pathways using standard performance criteria, our method performs surprisingly well. Precision and recall rates are comparable to those previously achieved for the well-known protein-protein interaction extraction task. We conclude that automated metabolic pathway construction is more tractable than has often been assumed, and that (as in the case of protein-protein interaction extraction) relatively simple text-mining approaches can prove surprisingly effective. It is hoped that these results will provide an impetus to further research and act as a useful benchmark for judging the performance of more sophisticated methods that are yet to be developed.

Abstract Interpretation as a Programming Language

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Mads Rosendahl

2013-09-01

Full Text Available In David Schmidt's PhD work he explored the use of denotational semantics as a programming language. It was part of an effort to not only treat formal semantics as specifications but also as interpreters and input to compiler generators. The semantics itself can be seen as a program and one may examine different programming styles and ways to represent states. Abstract interpretation is primarily a technique for derivation and specification of program analysis. As with denotational semantics we may also view abstract interpretations as programs and examine the implementation. The main focus in this paper is to show that results from higher-order strictness analysis may be used more generally as fixpoint operators for higher-order functions over lattices and thus provide a technique for immediate implementation of a large class of abstract interpretations. Furthermore, it may be seen as a programming paradigm and be used to write programs in a circular style.

Abstract spatial concept priming dynamically influences real-world actions

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Sarah M Tower-Richardi

2012-09-01

Full Text Available Experienced regularities in our perceptions and actions play important roles in grounding abstract concepts such as social status, time, and emotion. Might we similarly ground abstract spatial concepts in more experienced-based domains? The present experiment explores this possibility by implicitly priming abstract spatial terms (north, south, east, west and then measuring participants’ hand movement trajectories while they respond to a body-referenced spatial target (up, down, left, right in a verbal (Exp. 1 or spatial (Exp. 2 format. Results from two experiments demonstrate temporally-dynamic and prime-biased movement trajectories when the primes are incongruent with the targets (e.g., north – left, west – up. That is, priming abstract coordinate directions influences subsequent actions in response to concrete target directions. These findings provide the first evidence that abstract concepts of world-centered coordinate axes are implicitly understood in the context of concrete body-referenced axes; critically, this abstract-concrete relationship manifests in motor movements, and may have implications for spatial memory organization.

Desktop Access to Full-Text NACA and NASA Reports: Systems Developed by NASA Langley Technical Library

Science.gov (United States)

Ambur, Manjula Y.; Adams, David L.; Trinidad, P. Paul

1997-01-01

NASA Langley Technical Library has been involved in developing systems for full-text information delivery of NACA/NASA technical reports since 1991. This paper will describe the two prototypes it has developed and the present production system configuration. The prototype systems are a NACA CD-ROM of thirty-three classic paper NACA reports and a network-based Full-text Electronic Reports Documents System (FEDS) constructed from both paper and electronic formats of NACA and NASA reports. The production system is the DigiDoc System (DIGItal Documents) presently being developed based on the experiences gained from the two prototypes. DigiDoc configuration integrates the on-line catalog database World Wide Web interface and PDF technology to provide a powerful and flexible search and retrieval system. It describes in detail significant achievements and lessons learned in terms of data conversion, storage technologies, full-text searching and retrieval, and image databases. The conclusions from the experiences of digitization and full- text access and future plans for DigiDoc system implementation are discussed.

Converging modalities ground abstract categories: the case of politics.

Directory of Open Access Journals (Sweden)

Ana Rita Farias

Full Text Available Three studies are reported examining the grounding of abstract concepts across two modalities (visual and auditory and their symbolic representation. A comparison of the outcomes across these studies reveals that the symbolic representation of political concepts and their visual and auditory modalities is convergent. In other words, the spatial relationships between specific instances of the political categories are highly overlapping across the symbolic, visual and auditory modalities. These findings suggest that abstract categories display redundancy across modal and amodal representations, and are multimodal.

A critical analysis of publication rates of national oncology meeting abstracts in Turkey

Directory of Open Access Journals (Sweden)

S. Kilickap

2018-04-01

Full Text Available Purpose: In this study our aim is to analyze the publication rates of abstracts, which were presented between 2006 and 2011 years in biennial National Cancer Meeting of Turkey (NCM and Turkish Medical Oncology Society Meeting (TMOSM and to determine the timely change of publication rates and to predict the quality of the abstracts. Methods: All abstracts, which are either accepted as podium or poster presentations in NCM and TMOM between 2006 and 2011, are extracted. Subsequent publication rate of those abstracts were defined by searching PubMed and Turkish Medical Index. Results: Between 2006 and 2011, overall 2451 abstracts were presented in annual NC and TMOS meetings. Of these 2451 abstracts, 286 of them (11.7% were published in consecutive years. Median publication interval was 11 months. While 28 of 286 (9.8% abstracts were published in national journals, 258 of them (90.2% were published in international journals. 97 of a total of 424 podium presentations (22.9% were published. The publication rate was correlated with the type of presentation (OP vs. PP: 22.9% vs. 9.3%, p < 0.001. The highest publication rate was for prospective studies (%14.4. Majority of abstracts (53.1% were published in journals indexed within the science citation index (SCI. Rest of the published abstracts were in index of SCI-expanded. Conclusions: Non-publication of research abstracts is a problem for 88.3% of abstracts of this study. The data presented in this study should lead abstract authors to criticize themselves and find a way to improve their study quality. Keywords: Abstract, Full-text, Manuscript, Peer-review, Publication rate

Parasitological Society of Southern Africa - 34th Annual Congress : conference abstracts

Directory of Open Access Journals (Sweden)

Editorial Office

2006-06-01

Full Text Available The following are abstracts of papers and posters presented at the 34th Annual Congress of the Parasitological Society of Southern Africa (PARSA, 25–28 September 2005, Magoebaskloof Hotel, Magoebaskloof.

What does the brain tell us about abstract art?

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Vered eAviv

2014-02-01

Full Text Available In this essay I focus on the question of why we are attracted to abstract art (or, perhaps more accurately, non-representational art. After elaborating on the processing of visual art in general and abstract art in particular, I discuss recent data from neuroscience and behavioral studies related to abstract art. I conclude with several speculations concerning our apparent appeal to this particular type of art. In particular, I claim that abstract art frees our brain from the dominance of reality, enabling it to flow within its inner states, create new emotional and cognitive associations, and activate brain-states that are otherwise harder to access. This process is apparently rewarding as it enables the exploration of yet undiscovered inner territories of the viewer’s brain.

Getting more out of biomedical documents with GATE's full lifecycle open source text analytics.

Science.gov (United States)

Cunningham, Hamish; Tablan, Valentin; Roberts, Angus; Bontcheva, Kalina

2013-01-01

This software article describes the GATE family of open source text analysis tools and processes. GATE is one of the most widely used systems of its type with yearly download rates of tens of thousands and many active users in both academic and industrial contexts. In this paper we report three examples of GATE-based systems operating in the life sciences and in medicine. First, in genome-wide association studies which have contributed to discovery of a head and neck cancer mutation association. Second, medical records analysis which has significantly increased the statistical power of treatment/outcome models in the UK's largest psychiatric patient cohort. Third, richer constructs in drug-related searching. We also explore the ways in which the GATE family supports the various stages of the lifecycle present in our examples. We conclude that the deployment of text mining for document abstraction or rich search and navigation is best thought of as a process, and that with the right computational tools and data collection strategies this process can be made defined and repeatable. The GATE research programme is now 20 years old and has grown from its roots as a specialist development tool for text processing to become a rather comprehensive ecosystem, bringing together software developers, language engineers and research staff from diverse fields. GATE now has a strong claim to cover a uniquely wide range of the lifecycle of text analysis systems. It forms a focal point for the integration and reuse of advances that have been made by many people (the majority outside of the authors' own group) who work in text processing for biomedicine and other areas. GATE is available online under GNU open source licences and runs on all major operating systems. Support is available from an active user and developer community and also on a commercial basis.

Parasitological Society of Southern Africa - 33rd Annual Congress : conference abstracts

Directory of Open Access Journals (Sweden)

Editorial Office

2005-06-01

Full Text Available The following are abstracts of papers and posters presented at the 33rd Annual Congress of the Parasitological Society of Southern Africa (PARSA, 12–15 September 2004, Manyane, Pilansberg National Park.

Old Romanian pluralized mass and abstract nouns

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Gabriela Pană Dindelegan

2017-09-01

Full Text Available The analysis of a rich old Romanian corpus shows that the ‘pluralization’ of mass and abstract nouns is extremely frequent in old Romanian. The semantic effects of pluralization are similar for mass and abstract nouns, consisting in the creation of denotative and/or connotative semantic variants. Of the plural endings, –uri is specialized for the pluralization of mass nouns in Daco-Romanian. The evolution of the ending –uri illustrates the specific process by which a grammatical (plural morpheme is converted into a lexical morpheme (the so-called ‘lexical plurals’. ‘Lexical plurals’ have isolated occurrences in other Romance languages, but they have not reached the spread and regularity they display in Romanian.

Anticipating hidden text salting in emails (extended abstract)

OpenAIRE

Lioma, Christina; Moens, Marie-Francine; Gomez, Juan Carlos; De Beer, Jan; Bergholz, Andre; Paass, Gerhard; Horkan, Patrick

2008-01-01

Salting is the intentional addition or distortion of content, aimed to evade automatic filtering. Salting is usually found in spam emails. Salting can also be hidden in phishing emails, which aim to steal personal information from users. We present a novel method that detects hidden salting tricks as visual anomalies in text. We solely use these salting tricks to successfully classify emails as phishing (F-measure >90%).

Embodied cognition, abstract concepts, and body manipulation

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Katinka eDijkstra

2014-08-01

Full Text Available Current approaches on cognition hold that concrete concepts are grounded in concrete experiences. There is no consensus, however, as to whether this is equally true for abstract concepts. In this review we discuss how the body might be involved in understanding abstract concepts through metaphor activation. Substantial research has been conducted on the activation of common orientational metaphors with bodily manipulations, such as ‘power is up’ and ‘more is up’ representations. We will focus on the political metaphor that has a more complex association between the concept and the concrete domain. However, the outcomes of studies on this political metaphor have not always been consistent, possibly because the experimental manipulation was not implicit enough. The inclusion of new technological devices in this area of research, such as the Wii Balance Board, seems promising in order to assess the groundedness of abstract conceptual spatial metaphors in an implicit manner. This may aid further research to effectively demonstrate the interrelatedness between the body and more abstract representations.

Argument structure and the representation of abstract semantics.

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Javier Rodríguez-Ferreiro

Full Text Available According to the dual coding theory, differences in the ease of retrieval between concrete and abstract words are related to the exclusive dependence of abstract semantics on linguistic information. Argument structure can be considered a measure of the complexity of the linguistic contexts that accompany a verb. If the retrieval of abstract verbs relies more on the linguistic codes they are associated to, we could expect a larger effect of argument structure for the processing of abstract verbs. In this study, sets of length- and frequency-matched verbs including 40 intransitive verbs, 40 transitive verbs taking simple complements, and 40 transitive verbs taking sentential complements were presented in separate lexical and grammatical decision tasks. Half of the verbs were concrete and half were abstract. Similar results were obtained in the two tasks, with significant effects of imageability and transitivity. However, the interaction between these two variables was not significant. These results conflict with hypotheses assuming a stronger reliance of abstract semantics on linguistic codes. In contrast, our data are in line with theories that link the ease of retrieval with availability and robustness of semantic information.

From Text to Political Positions: Text analysis across disciplines

NARCIS (Netherlands)

Kaal, A.R.; Maks, I.; van Elfrinkhof, A.M.E.

2014-01-01

ABSTRACT From Text to Political Positions addresses cross-disciplinary innovation in political text analysis for party positioning. Drawing on political science, computational methods and discourse analysis, it presents a diverse collection of analytical models including pure quantitative and

The Fate of Abstracts Presented at the 2013 and 2014 Annual Meetings of the Romanian Society of Gastroenterology and Hepatology.

Science.gov (United States)

Trifan, Anca; Chihaia, Catalin-Alexandru; Tanase, Oana; Lungu, Cristina-Maria; Stanciu, Carol

2016-12-01

Oral and poster presentations at annual national meetings of the Romanian Society of Gastroenterology and Hepatology (RSGH) provide a forum for education, communication and discussion of new research. However, for the wide-spread dissemination of the new research work, each presentation should be subsequently published as a full-text article in peer-reviewed, indexed journals. to evaluate the publication rate of full-text articles in peer-reviewed journals after being first presented as abstracts at two consecutive RSGH annual meetings. A retrospective review of all abstracts presented at the annual meetings in 2013 and 2014 was performed. PubMed and Google Scholar were searched using abstract titles, first author's name and affiliation, and key words from the title to identify whether an abstract resulted in a peer-reviewed publication. Abstracts published in full-text were subsequently assessed for study type, study center, topics, publication year, journals and their impact factors (IFs). We chose the 2013 and 2014 meetings to ensure a minimum two-year follow-up period since the last meeting for the publication as full-length articles. A total of 562 abstracts were presented (275 in 2013, 287 in 2014). There were 150 oral presentations (93 in 2013, 57 in 2014) and 412 poster presentations (182 in 2013, 230 in 2014). Fifty seven of them (10.1%) were published as full-text articles, among them 26 (17.3%) after oral presentations and 31 (7.5%) after poster presentations (P=0.001). University affiliation and original research work were most likely to be published. The average IFs of the journals which published the articles were 2.42 in 2013 and 1.87 in 2014. The publication rate for the annual RSGH meetings abstracts as full-text articles in peer-reviewed journals is very low compared to the analyses performed in gastroenterology or other medical specialities from other countries. It is not clear yet what are the factors responsible for the failure of publication.

Ad Oculos. Images, Imagination and Abstract Thinking

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Alessandra Cirafici

2018-03-01

Full Text Available The unusual edition of Elements of Euclid released for publishing in 1847 by Oliver Byrne offers the occasion to suggest a few elements for discussion on the uniqueness of the ‘representation’ of geometric-mathematical thinking—and more in general of the abstract thinking—enshrined in its ‘nature of a pure imaginative vision able to connect the intelligible with the tangible’. The purpose is, thus, a reasoning on images and communicative artefacts, that, when articulated, provide different variations of the idea of ‘transcription’ of complex theoretical structures from one language (that of abstract logic to another (that of sensory experience, with a view to facilitate, ease and make more accurate the noetic process. Images able over time to facilitate the understanding of complex and abstract theoretical principles—since able to show them in an extremely concrete way, ad oculos,—and which at some points could reveal the horizons of art interpretation to inscrutable and figurative meaningless formulas.

National Physics Conference. Paper Abstracts

International Nuclear Information System (INIS)

Marinela Dumitriu, Editorial Coordination.

1995-01-01

This book contains the abstracts of the proceedings of the annual Romanian Physics Conference organized by Romanian Physics Society. The conference was held on November 30 to December 2, 1995 in the city of Baia Mare. It was organized in the following nine sections: 1 - Astrophysics, Particle Physics, Nuclear Physics, Molecular and Atomic Physics; 2 - Plasma Physics; 3 - Biophysics; 4 - Technical Physics; 5 - Theoretical Physics; 6 -The Physics of Energy; 7 - The Physics of Environment 8 - Solid State Physics; 9 - Optical and Quantum Electronics. The full texts can be obtained on request from the Romanian Physical Society or directly from authors

Abstraction Layer For Development And Deployment Of Cloud Services

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Binh Minh Nguyen

2012-01-01

Full Text Available In this paper, we will present an abstraction layer for cloud computing, which intends to simplify the manipulation with virtual machines in clouds for easy and controlled development and deployment of cloud services. It also ensures interoperability between different cloud infrastructures and allows developers to create cloud appliances easily via inheritance mechanisms.

Impact of Metadata on Full-text Information Retrieval Performance: An Experimental Research on a Small Scale Turkish Corpus

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Çağdaş Çapkın

2016-12-01

Full Text Available Information institutions use text-based information retrieval systems to store, index and retrieve metadata, full-text, or both metadata and full-text (hybrid contents. The aim of this research was to evaluate impact of these contents on information retrieval performance. For this purpose, metadata (MIR, full-text (FIR and hybrid (HIR content information retrieval systems were developed with default Lucene information retrieval model for a small scale Turkish corpus. In order to evaluate performance of this three systems, “precision - recall” and “normalized recall” tests were conducted. Experimental findings showed that there were no significant differences between MIR and FIR in mean average precision (MAP performance. On the other hand, MAP performance of HIR was significantly higher in comparison to MIR and FIR. When information retrieval performance was evaluated as user-centered, the “normalized recall” performances of MIR and HIR were significantly higher than FIR. Additionally, there were no significant differences between the systems in retrieved relevant document means. Processing different types of contents such as metadata and full-text had some advantages and disadvantages for information retrieval systems in terms of term management. The advantages brought together in hybrid content processing (HIR and information retrieval performance improved.

Contextual analysis of Biology and Chemistry academic graphical abstracts

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Cristiane Salete Florek

2016-10-01

Full Text Available http://dx.doi.org/10.5007/1984-8412.2016v13n3p1363 The Graphical Abstract (GA is a non-regular discursive practice held in the academic context, and that, when occurs, coexists with the academic abstract (AA in the table of contents of scientific journals, and in HTML versions of academic articles, materializing by the combination of the verbal and visual semiotics. In this paper, in the light of the Critical Analysis genres (MEURER, 2002; BHATIA, 2004; MOTTA-ROTH, 2006, 2008, which allow us to study a text based on the investigation of its context’s critical research, we present the results of the contextual analysis of GAs in the areas of Biology and Chemistry. This analysis was done by: i interviews with researchers of the investigated areas; and ii documentary analysis. Results show that, in general, GA: i is highlighted by presenting an advertising nature, which seeks to attract the reader’s attention; ii: summarizes the topic and the main findings of scientific research; and iii does not replace the academia abstract (AA.

Are figure legends sufficient? Evaluating the contribution of associated text to biomedical figure comprehension.

Science.gov (United States)

Yu, Hong; Agarwal, Shashank; Johnston, Mark; Cohen, Aaron

2009-01-06

Biomedical scientists need to access figures to validate research facts and to formulate or to test novel research hypotheses. However, figures are difficult to comprehend without associated text (e.g., figure legend and other reference text). We are developing automated systems to extract the relevant explanatory information along with figures extracted from full text articles. Such systems could be very useful in improving figure retrieval and in reducing the workload of biomedical scientists, who otherwise have to retrieve and read the entire full-text journal article to determine which figures are relevant to their research. As a crucial step, we studied the importance of associated text in biomedical figure comprehension. Twenty subjects evaluated three figure-text combinations: figure+legend, figure+legend+title+abstract, and figure+full-text. Using a Likert scale, each subject scored each figure+text according to the extent to which the subject thought he/she understood the meaning of the figure and the confidence in providing the assigned score. Additionally, each subject entered a free text summary for each figure-text. We identified missing information using indicator words present within the text summaries. Both the Likert scores and the missing information were statistically analyzed for differences among the figure-text types. We also evaluated the quality of text summaries with the text-summarization evaluation method the ROUGE score. Our results showed statistically significant differences in figure comprehension when varying levels of text were provided. When the full-text article is not available, presenting just the figure+legend left biomedical researchers lacking 39-68% of the information about a figure as compared to having complete figure comprehension; adding the title and abstract improved the situation, but still left biomedical researchers missing 30% of the information. When the full-text article is available, figure comprehension

FULIR Full-text Institutional Repository of the Ruđer Bošković Institute

Directory of Open Access Journals (Sweden)

Macan, B.

2014-11-01

Full Text Available Institutional repositories are online platforms for gathering, archiving, dissemination and long-term preservation of an institution’s scientific output. Archiving full-text papers into the institutional and other open access repositories (OAR is one way of achieving open access to scientific informa tion, the so-called “green” OA. In 2006 the idea of implementing an institutional repository at the Ruđer Bošković Institute Library was initiated and one year later, the project had started, parallel with the subproject of digitizing RBI’s documentary materials. 4 Various open source solutions were tested, among which EPrints software was chosen as the most suitable to RBI’s needs. The first documents were archived in March 2011, and on October 18, 2012, the official version of the repository was published under the name Full-text Institutional Repository of the Ruđer Bošković Institute – FULIR. The goal of FULIR is to gather, archive, disseminate and preserve, for the long term, the whole scientific production and documentary materials of the Institute in digital form, as well as provide open access to archived materials where possible. It is possible to archive all kinds of materials in FULIR, such as articles published in journals, conference proceedings, books, book chapters, dissertations, but also various kinds of unpublished materials such as posters and presentations from conferences or lectures, reports, audio and video records and datasets. FULIR is based on the principle that the scientists themselves archive their materials, but in this initial phase, the librarians are also assisting the scientists in archiving new items. The repository allows different access rights to archived materials and a depositor may define to whom (all users/only registered users (RBI staff/only repository administrators, and when (immediately or after a cer tain embargo period full-texts of archived materials will be available. Repository

Generic process model structures: towards a standard notation for abstract representations

CSIR Research Space (South Africa)

Van Der Merwe, A

2007-10-01

Full Text Available in the case of objects, or repositories in the case of process models. The creation of the MIT Process Handbook was a step in this direction. However, although the authors used object-oriented concepts in the abstract representations, they did not rigorously...

Generalized Asymptotically Almost Periodic and Generalized Asymptotically Almost Automorphic Solutions of Abstract Multiterm Fractional Differential Inclusions

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G. M. N’Guérékata

2018-01-01

Full Text Available The main aim of this paper is to investigate generalized asymptotical almost periodicity and generalized asymptotical almost automorphy of solutions to a class of abstract (semilinear multiterm fractional differential inclusions with Caputo derivatives. We illustrate our abstract results with several examples and possible applications.

An Abstract Model of Historical Processes

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Michael Poulshock

2017-06-01

Full Text Available A theoretical model is presented which provides a way to simulate, at a very abstract level, power struggles in the social world. In the model, agents can benefit or harm each other, to varying degrees and with differing levels of influence. The agents interact over time, using the power they have to try to get more of it, while being constrained in their strategic choices by social inertia. The outcomes of the model are probabilistic. More research is needed to determine whether the model has any empirical validity.

Large-scale extraction of gene interactions from full-text literature using DeepDive.

Science.gov (United States)

Mallory, Emily K; Zhang, Ce; Ré, Christopher; Altman, Russ B

2016-01-01

A complete repository of gene-gene interactions is key for understanding cellular processes, human disease and drug response. These gene-gene interactions include both protein-protein interactions and transcription factor interactions. The majority of known interactions are found in the biomedical literature. Interaction databases, such as BioGRID and ChEA, annotate these gene-gene interactions; however, curation becomes difficult as the literature grows exponentially. DeepDive is a trained system for extracting information from a variety of sources, including text. In this work, we used DeepDive to extract both protein-protein and transcription factor interactions from over 100,000 full-text PLOS articles. We built an extractor for gene-gene interactions that identified candidate gene-gene relations within an input sentence. For each candidate relation, DeepDive computed a probability that the relation was a correct interaction. We evaluated this system against the Database of Interacting Proteins and against randomly curated extractions. Our system achieved 76% precision and 49% recall in extracting direct and indirect interactions involving gene symbols co-occurring in a sentence. For randomly curated extractions, the system achieved between 62% and 83% precision based on direct or indirect interactions, as well as sentence-level and document-level precision. Overall, our system extracted 3356 unique gene pairs using 724 features from over 100,000 full-text articles. Application source code is publicly available at https://github.com/edoughty/deepdive_genegene_app russ.altman@stanford.edu Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press.

Identifying Scientific Project-generated Data Citation from Full-text Articles: An Investigation of TCGA Data Citation

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Jiao Li

2016-06-01

Full Text Available Purpose: In the open science era, it is typical to share project-generated scientific data by depositing it in an open and accessible database. Moreover, scientific publications are preserved in a digital library archive. It is challenging to identify the data usage that is mentioned in literature and associate it with its source. Here, we investigated the data usage of a government-funded cancer genomics project, The Cancer Genome Atlas (TCGA, via a full-text literature analysis. Design/methodology/approach: We focused on identifying articles using the TCGA dataset and constructing linkages between the articles and the specific TCGA dataset. First, we collected 5,372 TCGA-related articles from PubMed Central (PMC. Second, we constructed a benchmark set with 25 full-text articles that truly used the TCGA data in their studies, and we summarized the key features of the benchmark set. Third, the key features were applied to the remaining PMC full-text articles that were collected from PMC. Findings: The amount of publications that use TCGA data has increased significantly since 2011, although the TCGA project was launched in 2005. Additionally, we found that the critical areas of focus in the studies that use the TCGA data were glioblastoma multiforme, lung cancer, and breast cancer; meanwhile, data from the RNA-sequencing (RNA-seq platform is the most preferable for use. Research limitations: The current workflow to identify articles that truly used TCGA data is labor-intensive. An automatic method is expected to improve the performance. Practical implications: This study will help cancer genomics researchers determine the latest advancements in cancer molecular therapy, and it will promote data sharing and data-intensive scientific discovery. Originality/value: Few studies have been conducted to investigate data usage by government-funded projects/programs since their launch. In this preliminary study, we extracted articles that use TCGA data

Bengali text summarization by sentence extraction

OpenAIRE

Sarkar, Kamal

2012-01-01

Text summarization is a process to produce an abstract or a summary by selecting significant portion of the information from one or more texts. In an automatic text summarization process, a text is given to the computer and the computer returns a shorter less redundant extract or abstract of the original text(s). Many techniques have been developed for summarizing English text(s). But, a very few attempts have been made for Bengali text summarization. This paper presents a method for Bengali ...

Scholarly Electronic Full-Text Publications via the Internet: Issues and Impacts

Science.gov (United States)

Kosmin, Linda J.

1999-01-01

On-line access to complete texts of scholarly journal articles, conference papers, and books is facilitated by rapidly developing World-wide Web Internet access and capabilities. Meanwhile, print publications continue to be produced and read in spite of the proliferation of many networked electronic publications. The purpose of this presentation is to highlight fundamental issues impacting stakeholder groups, as the trend continues towards migration from paper to affordable ubiquitous networked full-text publications. Librarians, publishers, authors and end-users have various viewpoints, interests, and concerns. There are many issues challenging all stakeholder groups. For instance, all share concerns about administering copyright compliance and enforcing fair use. Uncontrollable electronic downstreaming could result in infringed copyright, while limiting a publisher's entitled revenue stream. Moreover, metered fee-based access may hamper scholarly information research. And, self-authoring on the Internet without peer filtering could lead to information clutter. Many related issues challenge librarians in particular. Among these are rising journal subscription prices, regardless if offered in print or electronic. Some electronic offerings are independent of print, others supplement or duplicate print; several publishers presently require subscribing to print in order to access electronic. Furthermore, numbers of publications are n'ow being marketed via the Internet directly to end-users, which can be viewed as encouraging users to bypass the traditional library. A key issue challenging publishers today is the rapidly expanding electronic user base that is demanding delivery of added-value full-text to desktop computers. Also of growing concern appears to be the decline in print sales to libraries, thereby reducing traditional revenue stream potential. Nowadays, publishers are more hesitant about investing in the production of publications geared toward small niche

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Dale E. Zand (1997) argues that People once stood in awe of electricity, until ... in today's information-driven organizations: knowledge, trust, and power. ..... people's culture and resistance to anti-corruption efforts constitute the firmly fixed load.

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The overshadowing of education policies in foreign language education at primary .... Cummins states that a threshold level of linguistics competence must be ..... language education planning is designed to accommodate these interests.

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Hence, the main objective of the research was to carry out scientific studies on its ... The animals were sacrificed on day 30 after the NIB scoring and blood sample ... effect on locomotion and rearing activities when compared with the control.

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Epidemiological study has shown that 2.5 million deaths occurred every year as a result of vaccine-preventable diseases, mainly in Africa and Asia among children less than 5 years old (GIVS, 2005). Immunization is the process of conferring increased resistance to an infectious disease by a means other than experiencing ...

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Keywords: Technology, French as a foreign language, Learners, Instruction ... This translates to an increase of 3.7 percent or 1.4 million new mobile subscriptions ... technology (ICT) in foreign language learning and the availability as well as capacities ..... In spite of the many benefits of creating an authentic French learning ...

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Pablo Rubio Gijon

Hishongwa belongs to a generation of writers who created a new style of expression in .... authority, can turn this authority into something even more autocratic. ... leadership of that (liberation) struggle” (Haarhoff 224), Hishongwa's Marrying ...

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In English, this class includes the particles how, too, so, and as (Ibid). (3) Mary is ...... Doctoral thesis (unpublished), University of Dar es Salaam. Goodness, D. .... manga. fat. corpulent. 36. mbindipindi. green. 37. mwalo. naughty. absurd. 38.

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... country and mass migration of the farming communities to IDP camps in major cities ..... "Global Warming Impact: Flood Events, Wet-Dry Conditions and Changing ... Global Environmental Change, Vol. 16, pp. 268-281.Web. Adger, W. N. (1999). "Social Vulnerability to Climate Change and Extremes in Coastal Vietnam.

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UNIVERSITY OF BENIN

By paying strict attention to the manipulation of action and dialogue, the short story ... through the workings of the human mind as he reacts to various predicaments. .... In “A Caring Man,” in A Forest of Flowers, Ken Saro-Wiwa illustrates the theme of .... until his small dirty pillow is thrown out of the window of the moving train.

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Oita Etyang

The concept democracy has been part of man's political life for ages. ... Taking the queue form Bratton and Mattes, we add that prospects of a stable democracy are ..... of the resulting instability that emanate from entrenched ethnic cleavages.

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Adopting a surveillance system for antibacterial use has therefore become a more realistic ..... Financial support was obtained from the African Poverty Related Infection ... classification and Defined Daily Dose system methodology in Canada.

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TAOFEEK YUSUF

The data used were obtained through questionnaires administered to ... Keywords: academic performance, engineering education, undergraduate students, and .... and commitment to studies irrespective of any form of learning task Yusuf et al.

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Njeri

He took his children to St Marys, I could not afford to do so. ... place in universities should have been an important learning space for students. ... just us we are fascinated by Manchester football clubs and western movies as well as music.

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Language and Meaning: A Syntactic Study of Wale Okediran's Strange Encounters ... own communication role, making assertions, asking questions, giving orders, ... I will go straight to the police with all the things you stole from the hospital.

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paula fiona mwikali

The Portrayal of Masculinity in Dholuo Ohangla Music ... The Luo culture is built on patriarchy and the socialization of the children ..... A leader must be strong because those he/ she leads look up to him/her for direction, assistance and development. ... Being a loyal lieutenant of Orange Democratic Movement, Anyanga ...

Automatic Probabilistic Program Verification through Random Variable Abstraction

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Damián Barsotti

2010-06-01

Full Text Available The weakest pre-expectation calculus has been proved to be a mature theory to analyze quantitative properties of probabilistic and nondeterministic programs. We present an automatic method for proving quantitative linear properties on any denumerable state space using iterative backwards fixed point calculation in the general framework of abstract interpretation. In order to accomplish this task we present the technique of random variable abstraction (RVA and we also postulate a sufficient condition to achieve exact fixed point computation in the abstract domain. The feasibility of our approach is shown with two examples, one obtaining the expected running time of a probabilistic program, and the other the expected gain of a gambling strategy. Our method works on general guarded probabilistic and nondeterministic transition systems instead of plain pGCL programs, allowing us to easily model a wide range of systems including distributed ones and unstructured programs. We present the operational and weakest precondition semantics for this programs and prove its equivalence.

Challenges in Quantitative Abstractions for Collective Adaptive Systems

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Mirco Tribastone

2016-07-01

Full Text Available Like with most large-scale systems, the evaluation of quantitative properties of collective adaptive systems is an important issue that crosscuts all its development stages, from design (in the case of engineered systems to runtime monitoring and control. Unfortunately it is a difficult problem to tackle in general, due to the typically high computational cost involved in the analysis. This calls for the development of appropriate quantitative abstraction techniques that preserve most of the system's dynamical behaviour using a more compact representation. This paper focuses on models based on ordinary differential equations and reviews recent results where abstraction is achieved by aggregation of variables, reflecting on the shortcomings in the state of the art and setting out challenges for future research.

Nonclassical Problem for Ultraparabolic Equation in Abstract Spaces

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Gia Avalishvili

2016-01-01

Full Text Available Nonclassical problem for ultraparabolic equation with nonlocal initial condition with respect to one time variable is studied in abstract Hilbert spaces. We define the space of square integrable vector-functions with values in Hilbert spaces corresponding to the variational formulation of the nonlocal problem for ultraparabolic equation and prove trace theorem, which allows one to interpret initial conditions of the nonlocal problem. We obtain suitable a priori estimates and prove the existence and uniqueness of solution of the nonclassical problem and continuous dependence upon the data of the solution to the nonlocal problem. We consider an application of the obtained abstract results to nonlocal problem for ultraparabolic partial differential equation with second-order elliptic operator and obtain well-posedness result in Sobolev spaces.

Publication Rates and Inconsistencies of the Abstracts Presented at the National Anatomy Congresses in 2007 and 2008

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İlke Ali Gürses

2017-02-01

Full Text Available Background: Despite significant efforts made for, most abstracts presented during a meeting do not proceed and publish as a manuscript in scientific journals. Aims: To investigate publication rates of national anatomy congresses. Study Design: Descriptive study. Methods: All abstracts presented at two annual meetings in 2007 and 2008 were extracted. PubMed and Google Scholar database search used for publication history. Presentation and study types, publication rates and mean publishing times were evaluated. Inconsistency rates between meeting abstract and final published article were also considered. Results: Among 342 abstracts, 195 (57% were followed by a full-text article. Publication rates for oral and poster presentations were 75% and 52.2%, respectively. The mean publication time was 23.7±23 months. Overall, 89.2% of the articles were published within 5 years. There were no inconsistencies in 50 (25.6% articles, while 145 (74.4% had inconsistencies compared to the abstracts presented at the congress. Getting adequate information for 45 (23.1% articles was not possible. There was no standard reporting format for the abstracts. Conclusion: Our study shows that, overall publication rates for abstracts presented at national anatomy meetings were higher than those presented at national meetings for clinical specialties

Existence of Solutions of Abstract Nonlinear Mixed Functional Integrodifferential equation with nonlocal conditions

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Dhakne Machindra B.

2017-04-01

Full Text Available In this paper we discuss the existence of mild and strong solutions of abstract nonlinear mixed functional integrodifferential equation with nonlocal condition by using Sadovskii’s fixed point theorem and theory of fractional power of operators.

Moves Analysis on Abstracts Written by the Students in Academic Writing Class

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Ajeng Setyorini

2017-09-01

Full Text Available This paper contains analysis results on abstracts written by students in Academic Writing course. The analysis includes analyses on moves and linguistic features. The analysis aims at finding out how the abstract writing structures of the English Education students are in the Academic Writing course. The abstract analysis also includes the analysis on the use of the linguistic features in the abstracts. The analysis uses a qualitative research approach. There are totally 10 abstracts that are analyzed. These are then called as the data. Data obtained is analyzed using genre analysis approach. Results of analysis on the 10 abstracts showed that some of the abstracts are written using 5 kinds of moves. All of the abstracts are found using Purpose Move and Method Move. Meanwhile, Situation Move is found in 5 abstracts. 8 abstracts are identified using Result Move. Conclusion Move is found in 5 abstracts. The results also show that all of the abstract writers use pronouns ‘the writer’ and ‘the researcher’. The use of personal pronoun ‘she’ is also found in 1 abstract. Hedges used in abstracts written by students in Academic Writing course vary from modal auxiliary verbs, adjectival, adverbial, nominal to Approximates of degree.

Tipo abstracto de datos "Biblioteca" Library Abstract data type

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Silvana Temesio Vizoso

2010-12-01

Full Text Available Análisis de la descripción bibliográfica desde un punto de vista conceptual a partir de la especificación formal: tipo abstracto de datos "biblioteca". Se detallan otros abordajes usando el modelo entidad-relación y el lenguaje XML. Se concluye la relevancia del enfoque abstracto y su aplicabilidad genérica en un sujeto de cambio permanente.Analysis of bibliographic description from a conceptual point of view from the formal specification: "library" abstract data type. Other approaches are detailed using the entity-relationship model and XML language. We conclude the relevance of abstract approach and its general applicability in a subject of constant change.

Abstract Word Definition in Patients with Amnestic Mild Cognitive Impairment

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Soo Ryon Kim

2015-01-01

Full Text Available The aims of this study were to investigate concrete and abstract word definition ability (1 between patients with amnestic mild cognitive impairment (aMCI and normal adults and (2 between the aMCI subtypes (i.e., amnestic single-domain MCI and amnestic multidomain MCI; asMCI and amMCI and normal controls. The 68 patients with aMCI (29 asMCI and 39 amMCI and 93 age- and education-matched normal adults performed word definition tasks composed of five concrete (e.g., train and five abstract nouns (e.g., jealousy. Task performances were analyzed on total score, number of core meanings, and number of supplementary meanings. The results were as follows. First, the aMCI patients scored significantly poorer than the normal controls in only abstract word definition. Second, both subtypes of aMCI performed worse than the controls in only abstract word definition. In conclusion, a definition task of abstract rather than concrete concepts may provide richer information to show semantic impairment of aMCI.

A Full-Text-Based Search Engine for Finding Highly Matched Documents Across Multiple Categories

Science.gov (United States)

Nguyen, Hung D.; Steele, Gynelle C.

2016-01-01

This report demonstrates the full-text-based search engine that works on any Web-based mobile application. The engine has the capability to search databases across multiple categories based on a user's queries and identify the most relevant or similar. The search results presented here were found using an Android (Google Co.) mobile device; however, it is also compatible with other mobile phones.

Text Mining for Protein Docking.

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Varsha D Badal

2015-12-01

Full Text Available The rapidly growing amount of publicly available information from biomedical research is readily accessible on the Internet, providing a powerful resource for predictive biomolecular modeling. The accumulated data on experimentally determined structures transformed structure prediction of proteins and protein complexes. Instead of exploring the enormous search space, predictive tools can simply proceed to the solution based on similarity to the existing, previously determined structures. A similar major paradigm shift is emerging due to the rapidly expanding amount of information, other than experimentally determined structures, which still can be used as constraints in biomolecular structure prediction. Automated text mining has been widely used in recreating protein interaction networks, as well as in detecting small ligand binding sites on protein structures. Combining and expanding these two well-developed areas of research, we applied the text mining to structural modeling of protein-protein complexes (protein docking. Protein docking can be significantly improved when constraints on the docking mode are available. We developed a procedure that retrieves published abstracts on a specific protein-protein interaction and extracts information relevant to docking. The procedure was assessed on protein complexes from Dockground (http://dockground.compbio.ku.edu. The results show that correct information on binding residues can be extracted for about half of the complexes. The amount of irrelevant information was reduced by conceptual analysis of a subset of the retrieved abstracts, based on the bag-of-words (features approach. Support Vector Machine models were trained and validated on the subset. The remaining abstracts were filtered by the best-performing models, which decreased the irrelevant information for ~ 25% complexes in the dataset. The extracted constraints were incorporated in the docking protocol and tested on the Dockground unbound

Introduction to the theory of abstract algebras

CERN Document Server

Pierce, Richard S

2014-01-01

Intended for beginning graduate-level courses, this text introduces various aspects of the theory of abstract algebra. The book is also suitable as independent reading for interested students at that level as well as a primary source for a one-semester course that an instructor may supplement to expand to a full year. Author Richard S. Pierce, a Professor of Mathematics at Seattle's University of Washington, places considerable emphasis on applications of the theory and focuses particularly on lattice theory.After a preliminary review of set theory, the treatment presents the basic definitions

Experiencing art: the influence of expertise and painting abstraction level

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Elina ePihko

2011-09-01

Full Text Available How does expertise influence the perception of representational and abstract paintings? We asked 20 experts on art history and 20 laypersons to explore and evaluate a series of paintings ranging in style from representational to abstract in five categories. We compared subjective aesthetic judgments and emotional evaluations, gaze patterns, and electrodermal reactivity between the two groups of participants. The level of abstraction affected aesthetic judgments and emotional valence ratings of the laypersons but had no effect on the opinions of the experts: the laypersons’ aesthetic and emotional ratings were highest for representational paintings and lowest for abstract paintings, whereas the opinions of the experts were independent of the abstraction level. The gaze patterns of both groups changed as the level of abstraction increased: the number of fixations and the length of the scanpaths increased while the duration of the fixations decreased. The viewing strategies—reflected in the target, location and path of the fixations—however indicated that experts and laypersons paid attention to different aspects of the paintings. The electrodermal reactivity did not vary according to the level of abstraction in either group but expertise was reflected in weaker responses, compared with laypersons, to information received about the paintings.

EVOLUTION OF ABSTRACT VEGETAL ORNAMENTS IN ISLAMIC ARCHITECTURE

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Yahya Abdullahi

2015-03-01

Full Text Available This research investigated the history of Islamic abstract vegetal ornaments and sketched their evolution to understand their creation process and innovations. We studied these ornaments regionally to identify regional variations and classified them based on tastes of patrons. Meanwhile, we analysed the formal aspects of these ornaments, including their dimension, proportion, dominant colour, material, and techniques. In addition, the study conducted detailed observations of their characteristics, such as margins, apex, thickness of stem scrolls and vents, to define their constructive elements, aesthetical properties, and design principles that reveal date, region, and styles. This research not only provides a comprehensive guide to the evolution of Islamic abstract vegetal ornaments for architectural conservation projects but also serves as a reference for the comparative and critical analysis of contemporary Islamic-inspired ornaments.

Picturing Pollock: Photography’s Challenge to the Historiography of Abstract Expressionism

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Peter R. Kalb

2012-12-01

Full Text Available In the summer and fall of 1950, photographers Rudy Burckhardt and Hans Namuth documented Jackson Pollock in his studio as he was creating what have become his iconic Abstract Expressionist paintings. The photographs quickly dominated the critical discourse of the new painting and initiated a crisis in the historiography of Abstract Expressionism. This paper argues that despite being produced to serve an illustrative role for the Art News series ‘An Artists Paints a Picture’, Burckhardt and Namuth’s photographs of Pollock provide a glimpse of the analytic complexity photography offered art criticism.

Mapping Chinese Agricultural and Allied Sciences Journals Indexed in CAB Abstracts Database

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Arundhati Kaushik

2013-06-01

Full Text Available CAB Abstracts published by CABI (Centre for Agriculture and Biosciences International is the premier database for agricultural and allied sciences literature. The purpose of this study is to determine the extent of index coverage in CAB Abstracts and to identify the core journals in the field of agricultural and allied sciences published in China. The study depicts the trend of Chinese agricultural and allied sciences journals, which is successfully proving a gateway of the agricultural research in China to merge into the main stream of the world.

A Study on Noun Suffixes: Accounting for the Vernacularisation of English in Late Medieval Medical Texts

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Begoña Crespo

2012-01-01

Full Text Available This paper seeks to contribute to the study of the vernacularisation process in late Middle English by measuring up to what an extent concrete and abstract noun suffixes (in line with Dalton-Puffer 1996 attach to either Germanic or Romance bases in the medical texts extracted from the MEMT (Middle English Medical Texts corpus. The findings obtained have been further described according to text type or genre and to target audience/readership. The description of these suffixes in relation to all the parameters already mentioned has confirmed the predominance of abstract suffixes of Romance origin although Germanic abstract suffixes are also abundant. More hybrid formations have been found with Germanic noun suffixes than with Romance ones which might be indicative of their versatility towards vernacularisation.

Using distant supervised learning to identify protein subcellular localizations from full-text scientific articles.

Science.gov (United States)

Zheng, Wu; Blake, Catherine

2015-10-01

Databases of curated biomedical knowledge, such as the protein-locations reflected in the UniProtKB database, provide an accurate and useful resource to researchers and decision makers. Our goal is to augment the manual efforts currently used to curate knowledge bases with automated approaches that leverage the increased availability of full-text scientific articles. This paper describes experiments that use distant supervised learning to identify protein subcellular localizations, which are important to understand protein function and to identify candidate drug targets. Experiments consider Swiss-Prot, the manually annotated subset of the UniProtKB protein knowledge base, and 43,000 full-text articles from the Journal of Biological Chemistry that contain just under 11.5 million sentences. The system achieves 0.81 precision and 0.49 recall at sentence level and an accuracy of 57% on held-out instances in a test set. Moreover, the approach identifies 8210 instances that are not in the UniProtKB knowledge base. Manual inspection of the 50 most likely relations showed that 41 (82%) were valid. These results have immediate benefit to researchers interested in protein function, and suggest that distant supervision should be explored to complement other manual data curation efforts. Copyright © 2015 Elsevier Inc. All rights reserved.

Early positivity signals changes in an abstract linguistic pattern.

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Júlia Monte-Ordoño

Full Text Available The extraction of abstract structures from speech (or from gestures in the case of sign languages has been claimed to be a fundamental mechanism for language acquisition. In the present study we registered the neural responses that are triggered when a violation of an abstract, token-independent rule is detected. We registered ERPs while presenting participants with trisyllabic CVCVCV nonsense words in an oddball paradigm. Standard stimuli followed an ABB rule (where A and B are different syllables. Importantly, to distinguish neural responses triggered by changes in surface information from responses triggered by changes in the underlying abstract structure, we used two types of deviant stimuli. Phoneme deviants differed from standards only in their phonemes. Rule deviants differed from standards in both their phonemes and their composing rule. We observed a significant positivity as early as 300 ms after the presentation of deviant stimuli that violated the abstract rule (Rule deviants. The amplitude of this neural response was correlated with participants' performance in a behavioral rule learning test. Differences in electrophysiological responses observed between learners and non-learners suggest that individual differences in an abstract rule learning task might be related to how listeners select relevant sources of information.

A full-text english database of testimonies of those exposed to radiation near the Semipalatinsk nuclear test site, Kazakhstan

OpenAIRE

Matsuo, Masatsugu; Kawano, Noriyuki; Hirabayashi, Kyoko; Tooka, Yasuyuki; Apsalikov, Kazbek Negamatovich; Hoshi, Masaharu

2004-01-01

The present paper is a sequel to the initial report (Kawano et al 2003a) of the project for a full-text Japanese database of the testimonies of those exposed to radiation near the nuclear test site of Semipalatinsk, Kazakhstan. 139 testimonies were gathered in four villages near Semipalatinsk in 2002. We translated them into English from Russian and Kazakh, and created a full-text database by using a Latin script text retrieval program, TERESA. The present paper attempts at essentially the sa...

The Establishment of the Chinese Full-text Electronic Periodical Database and Service System

Directory of Open Access Journals (Sweden)

Huei-Chu Chang

2003-12-01

Full Text Available A database covers important journals to critical mass, with powerful search interface, and easy for remote access is the most reasonable electronic resource for users. This article try to start from the project of digitizing bio-medical journals in Taiwan area to the CEPS, discuss the related issues about the selection of journals, the digitized of back issues, the copyright transfer from authors to database producers, the feedback to authors for payment from revenue. It also talks about the flow of journal publishing, marketing, function and the proposed cost-effectiveness in CEPS.[Article content in Chinese

Database citation in supplementary data linked to Europe PubMed Central full text biomedical articles.

Science.gov (United States)

Kafkas, Şenay; Kim, Jee-Hyub; Pi, Xingjun; McEntyre, Johanna R

2015-01-01

In this study, we present an analysis of data citation practices in full text research articles and their corresponding supplementary data files, made available in the Open Access set of articles from Europe PubMed Central. Our aim is to investigate whether supplementary data files should be considered as a source of information for integrating the literature with biomolecular databases. Using text-mining methods to identify and extract a variety of core biological database accession numbers, we found that the supplemental data files contain many more database citations than the body of the article, and that those citations often take the form of a relatively small number of articles citing large collections of accession numbers in text-based files. Moreover, citation of value-added databases derived from submission databases (such as Pfam, UniProt or Ensembl) is common, demonstrating the reuse of these resources as datasets in themselves. All the database accession numbers extracted from the supplementary data are publicly accessible from http://dx.doi.org/10.5281/zenodo.11771. Our study suggests that supplementary data should be considered when linking articles with data, in curation pipelines, and in information retrieval tasks in order to make full use of the entire research article. These observations highlight the need to improve the management of supplemental data in general, in order to make this information more discoverable and useful.

On the Creation of Hypertext Links in Full-Text Documents: Measurement of Inter-Linker Consistency.

Science.gov (United States)

Ellis, David; And Others

1994-01-01

Describes a study in which several different sets of hypertext links are inserted by different people in full-text documents. The degree of similarity between the sets is measured using coefficients and topological indices. As in comparable studies of inter-indexer consistency, the sets of links used by different people showed little similarity.…

Abstract Level Parallelization of Finite Difference Methods

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Edwin Vollebregt

1997-01-01

Full Text Available A formalism is proposed for describing finite difference calculations in an abstract way. The formalism consists of index sets and stencils, for characterizing the structure of sets of data items and interactions between data items (“neighbouring relations”. The formalism provides a means for lifting programming to a more abstract level. This simplifies the tasks of performance analysis and verification of correctness, and opens the way for automaticcode generation. The notation is particularly useful in parallelization, for the systematic construction of parallel programs in a process/channel programming paradigm (e.g., message passing. This is important because message passing, unfortunately, still is the only approach that leads to acceptable performance for many more unstructured or irregular problems on parallel computers that have non-uniform memory access times. It will be shown that the use of index sets and stencils greatly simplifies the determination of which data must be exchanged between different computing processes.

Experimental Evaluation of Simulation Abstractions for Wireless Sensor Network MAC Protocols

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G. P. Halkes

2010-01-01

Full Text Available The evaluation of MAC protocols for Wireless Sensor Networks (WSNs is often performed through simulation. These simulations necessarily abstract away from reality in many ways. However, the impact of these abstractions on the results of the simulations has received only limited attention. Moreover, many studies on the accuracy of simulation have studied either the physical layer and per link effects or routing protocol effects. To the best of our knowledge, no other work has focused on the study of the simulation abstractions with respect to MAC protocol performance. In this paper, we present the results of an experimental study of two often used abstractions in the simulation of WSN MAC protocols. We show that a simple SNR-based reception model can provide quite accurate results for metrics commonly used to evaluate MAC protocols. Furthermore, we provide an analysis of what the main sources of deviation are and thereby how the simulations can be improved to provide even better results.

Work and Consumption in Digital Capitalism: From Commodity Abstraction to 'Eidetisation'

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Xavi Cava

2018-05-01

Full Text Available The digital sphere can be studied as one of the most mature materialisations of the process of abstraction that accompanies capitalism. It is also a framework where subjectivity internalises the abstract form of commodities even further. In this sense, the Internet is the home of an abstract nature that is linked to a particular reification process that characterises post-Fordist production and consumption. This process can be named “eidetisation”. My basic assumption is that the process of reification is being intensified with the digitalisation of the capitalist system. I will begin discussing the concept of reification as a specific form of alienation, stressing that the reification of society changes and intensifies in as much as capitalist production and consumption evolve. Then I will consider the process of abstraction as one of the main elements of reification. Finally, I will try to identify some distinctive traits within the process of “eidetisation”.

Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection.

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Tsai, Richard Tzong-Han; Lai, Po-Ting

2011-10-03

Gene normalization (GN) is the task of identifying the unique database IDs of genes and proteins in literature. The best-known public competition of GN systems is the GN task of the BioCreative challenge, which has been held four times since 2003. The last two BioCreatives, II.5 & III, had two significant differences from earlier tasks: firstly, they provided full-length articles in addition to abstracts; and secondly, they included multiple species without providing species ID information. Full papers introduce more complex targets for GN processing, while the inclusion of multiple species vastly increases the potential size of dictionaries needed for GN. BioCreative III GN uses Threshold Average Precision at a median of k errors per query (TAP-k), a new measure closely related to the well-known average precision, but also reflecting the reliability of the score provided by each GN system. To use full-paper text, we employed a multi-stage GN algorithm and a ranking method which exploit information in different sections and parts of a paper. To handle the inclusion of multiple unknown species, we developed two context-based dynamic strategies to select dictionary entries related to the species that appear in the paper-section-wide and article-wide context. Our originally submitted BioCreative III system uses a static dictionary containing only the most common species entries. It already exceeds the BioCreative III average team performance by at least 24% in every evaluation. However, using our proposed dynamic dictionary strategies, we were able to further improve TAP-5, TAP-10, and TAP-20 by 16.47%, 13.57% and 6.01%, respectively in the Gold 50 test set. Our best dynamic strategy outperforms the best BioCreative III systems in TAP-10 on the Silver 50 test set and in TAP-5 on the Silver 507 set. Our experimental results demonstrate the superiority of our proposed dynamic dictionary selection strategies over our original static strategy and most BioCreative III

Exploiting Spatial Abstraction in Predictive Analytics of Vehicle Traffic

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Natalia Andrienko

2015-04-01

Full Text Available By applying visual analytics techniques to vehicle traffic data, we found a way to visualize and study the relationships between the traffic intensity and movement speed on links of a spatially abstracted transportation network. We observed that the traffic intensities and speeds in an abstracted network are interrelated in the same way as they are in a detailed street network at the level of street segments. We developed interactive visual interfaces that support representing these interdependencies by mathematical models. To test the possibility of utilizing them for performing traffic simulations on the basis of abstracted transportation networks, we devised a prototypical simulation algorithm employing these dependency models. The algorithm is embedded in an interactive visual environment for defining traffic scenarios, running simulations, and exploring their results. Our research demonstrates a principal possibility of performing traffic simulations on the basis of spatially abstracted transportation networks using dependency models derived from real traffic data. This possibility needs to be comprehensively investigated and tested in collaboration with transportation domain specialists.

Representation without background? A critical reading of Wollheim and Greenberg on the representational character of abstract pictures

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Elisa Caldarola

2012-10-01

Full Text Available Focussing on some claims addressed by Richard Wollheim and Clement Greenberg I investigate how the concepts of depicted figure, background of a pictorial scene and ground of a picture are relevant for an understanding of the relation between figurative and abstract pictures, especially when it comes to consider whether abstract pictures can be said to represent pictorially.

[Exploration and construction of the full-text database of acupuncture literature in the Republic of China].

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Fei, Lin; Zhao, Jing; Leng, Jiahao; Zhang, Shujian

2017-10-12

The ALIPORC full-text database is targeted at a specific full-text database of acupuncture literature in the Republic of China. Starting in 2015, till now, the database has been getting completed, focusing on books relevant with acupuncture, articles and advertising documents, accomplished or published in the Republic of China. The construction of this database aims to achieve the source sharing of acupuncture medical literature in the Republic of China through the retrieval approaches to diversity and accurate content presentation, contributes to the exchange of scholars, reduces the paper damage caused by paging and simplify the retrieval of the rare literature. The writers have made the explanation of the database in light of sources, characteristics and current situation of construction; and have discussed on improving the efficiency and integrity of the database and deepening the development of acupuncture literature in the Republic of China.

Publication rates of podium and poster abstract presentations at the 2010 and 2011 society of gynecologic oncology conferences.

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Imani, Saba; Moore, Gretchan; Nelson, Nathan; Scott, Jared; Vassar, Matt

2018-05-01

This study aimed to determine the publication rate of oral and poster abstracts presented at the 2010 and 2011 Society of Gynecologic Oncology (SGO) conferences as well as the journals that most commonly published these studies, their 5-year impact factor, the time to publication, and the reasons for nonpublication. Abstracts presented at the 2010-2011 SGO conferences were included in this study. We searched Google, Google Scholar, and PubMed to locate published reports of these abstracts. If an abstract's full-text manuscript could not be located, an author of the conference abstract was contacted via email to inquire whether the research was published. If the research was unpublished, the authors were asked to provide the reason for nonpublication. The time to publication, journal, and journal impact factor were noted for abstracts that reached full-text publication. A total of 725 abstracts were identified, of which 386 (53%) reached publication in a peer-reviewed journal. Oral presentations were published at a higher rate than poster presentations. Most (70%) reached publication within 2 years of abstract presentation. Abstracts were published in 89 journals, but most (39%) were published in Gynecologic Oncology. The mean time to publication was 15.7 months, with a mean 5-year impact factor of 4.956. A 53% publication rate indicates that the SGO conference selection process favors research likely to be published and, thus, presumably of high quality. The overall publication rate is higher than that reported for many other biomedical conferences.

Beauty in abstract paintings: Perceptual contrast and statistical properties

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Birgit eMallon

2014-03-01

Full Text Available In this study, we combined the behavioral and objective approach in the field of empirical aesthetics. First, we studied the perception of beauty by investigating shifts in evaluation on perceived beauty of abstract artworks (Experiment 1. Because the participants showed heterogeneous individual preferences for the paintings, we divided them into seven clusters for the test. The experiment revealed a clear pattern of perceptual contrast. The perceived beauty of abstract paintings increased after exposure to paintings that were rated as less beautiful, and it decreased after exposure to paintings that were rated as more beautiful. Next, we searched for correlations of beauty ratings and perceptual contrast with statistical properties of abstract artworks (Experiment 2. The participants showed significant preferences for certain image properties. These preferences differed between the clusters of participants. Strikingly, next to color measures like hue, saturation, value and lightness, the recently described PHOG self-similarity value seems to be a predictor for aesthetic appreciation of abstract artworks. We speculate that the shift in evaluation in Experiment 1 was, at least in part, based on low-level adaptation to some of the statistical image properties analyzed in Experiment 2. In conclusion, our findings demonstrate that the perception of beauty in abstract artworks is altered after exposure to beautiful or non-beautiful images and correlates with particular image properties, especially color measures and self-similarity.

WASTK: A Weighted Abstract Syntax Tree Kernel Method for Source Code Plagiarism Detection

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Deqiang Fu

2017-01-01

Full Text Available In this paper, we introduce a source code plagiarism detection method, named WASTK (Weighted Abstract Syntax Tree Kernel, for computer science education. Different from other plagiarism detection methods, WASTK takes some aspects other than the similarity between programs into account. WASTK firstly transfers the source code of a program to an abstract syntax tree and then gets the similarity by calculating the tree kernel of two abstract syntax trees. To avoid misjudgment caused by trivial code snippets or frameworks given by instructors, an idea similar to TF-IDF (Term Frequency-Inverse Document Frequency in the field of information retrieval is applied. Each node in an abstract syntax tree is assigned a weight by TF-IDF. WASTK is evaluated on different datasets and, as a result, performs much better than other popular methods like Sim and JPlag.

Endnote Referencing Software: Importing references from an Ebsco database, attaching full text, organising your Endnote library

OpenAIRE

Turner, Susan

2017-01-01

This video demonstrates importing bibliographic references from EBSCO Discovery Service, the same method can be used for all EBSCO databases. \\ud The video also demonstrates how to attach full text files to the references and how to organise your references within the endnote library using groups.

Optimal Time-Abstract Schedulers for CTMDPs and Markov Games

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Markus Rabe

2010-06-01

Full Text Available We study time-bounded reachability in continuous-time Markov decision processes for time-abstract scheduler classes. Such reachability problems play a paramount role in dependability analysis and the modelling of manufacturing and queueing systems. Consequently, their analysis has been studied intensively, and techniques for the approximation of optimal control are well understood. From a mathematical point of view, however, the question of approximation is secondary compared to the fundamental question whether or not optimal control exists. We demonstrate the existence of optimal schedulers for the time-abstract scheduler classes for all CTMDPs. Our proof is constructive: We show how to compute optimal time-abstract strategies with finite memory. It turns out that these optimal schedulers have an amazingly simple structure---they converge to an easy-to-compute memoryless scheduling policy after a finite number of steps. Finally, we show that our argument can easily be lifted to Markov games: We show that both players have a likewise simple optimal strategy in these more general structures.

Blinds Bluffing of Vision: Paul de Man on Text

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Ali Jamalinesari

2014-11-01

Full Text Available Because of its figural or rhetorical component, language cannot be a reliable medium for stating truth. Rhetoric continually undermines the abstract systems of grammar and logic and any attempt to fix a connection between the book and the world is futile. Regarding the metaphoricity of language, this article tries to prove that how the critic’s search for meaning is defied by the difference between what is meant and what is said which is a de Man’s focal point. To have a correct misreading, we have to allow language express itself in its full multiplicity, taking as many possible significations as it can and as many various contradictory direction that it heads toward. There is no authoritative, authentic voice in a text. Each is as helpless and baseless as any other. The text dismantles itself. It annihilates the ground on which it stands.

Towards Identify Selective Antibacterial Peptides Based on Abstracts Meaning

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Liliana I. Barbosa-Santillán

2016-01-01

Full Text Available We present an Identify Selective Antibacterial Peptides (ISAP approach based on abstracts meaning. Laboratories and researchers have significantly increased the report of their discoveries related to antibacterial peptides in primary publications. It is important to find antibacterial peptides that have been reported in primary publications because they can produce antibiotics of different generations that attack and destroy the bacteria. Unfortunately, researchers used heterogeneous forms of natural language to describe their discoveries (sometimes without the sequence of the peptides. Thus, we propose that learning the words meaning instead of the antibacterial peptides sequence is possible to identify and predict antibacterial peptides reported in the PubMed engine. The ISAP approach consists of two stages: training and discovering. ISAP founds that the 35% of the abstracts sample had antibacterial peptides and we tested in the updated Antimicrobial Peptide Database 2 (APD2. ISAP predicted that 45% of the abstracts had antibacterial peptides. That is, ISAP found that 810 antibacterial peptides were not classified like that, so they are not reported in APD2. As a result, this new search tool would complement the APD2 with a set of peptides that are candidates to be antibacterial. Finally, 20% of the abstracts were not semantic related to APD2.

MODEL WRITTEN TEXTS IN THE RECOMMENDED SENIOR HIGH SCHOOL ENGLISH TEXTBOOKS

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Dwi Rukmini

2009-01-01

Full Text Available Abstract: This article is based on the study on the model written texts provided in the Senior High School English textbooks. It is aimed at finding out whether those models are written by considering the English two contexts, cultural and situational, which encircle them. The data are all written texts provided in the six recommended English textbooks published by six different publishers. The results reveal that only eleven out of 115 model written texts tend to be incompatible with the two contexts encircling them, this implies that 104 of them (93.43% are likely to be compatible and can be used as model texts.

Application of Mind Map-based abstracting technique in pedagogical strategy for ESP teaching/learning

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Ekaterina Choporova

2014-09-01

Full Text Available The work presents some theoretical and practical results of the abstracting practice carried out by the teachers and cadets of Voronezh Institute of the Ministry of Interior of Russia. The sources used in the experiment were of British and American origin, equally authentic, and were mainly of engineering content because of the cadets’ speciality. The main purpose of the experiment was focused on the primary source adequate abstract making as a product of a keen understanding of social and professional aspects, views, and anticipations of English-speaking nations. The authors analyzed a number of current approaches towards abstract making procedures and offered an original system of the education strategy by means of Mind Map building technique.

How accessibility influences citation counts: The case of citations to the full text articles available from ResearchGate

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Mohammad Sababi

2017-08-01

Full Text Available It is generally believed that the number of citations to an article can positively be correlated to its free online availability. In the present study, we investigated the possible impact of academic social networks on the number of citations. We chose the social web service “ResearchGate” as a case. This website acts both as a social network to connect researchers, and at the same time, as an open access repository to publish post-print version of the accepted manuscripts and final versions of open access articles. We collected the data of 1823 articles published by the authors from four different universities. By analyzing these data, we showed that although different levels of full text availability are observed for the four universities, there is always a significant positive correlation between full text availability and the citation count. Moreover, we showed that both post-print version and publisher’s version (i.e., final published version of the archived manuscripts receive more citations than non-OA articles, and the difference in the citation counts of post-print manuscripts and publisher’s version articles is nonsignificant.

Abstract analysis method facilitates filtering low-methodological quality and high-bias risk systematic reviews on psoriasis interventions.

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Gómez-García, Francisco; Ruano, Juan; Aguilar-Luque, Macarena; Alcalde-Mellado, Patricia; Gay-Mimbrera, Jesús; Hernández-Romero, José Luis; Sanz-Cabanillas, Juan Luis; Maestre-López, Beatriz; González-Padilla, Marcelino; Carmona-Fernández, Pedro J; García-Nieto, Antonio Vélez; Isla-Tejera, Beatriz

2017-12-29

Article summaries' information and structure may influence researchers/clinicians' decisions to conduct deeper full-text analyses. Specifically, abstracts of systematic reviews (SRs) and meta-analyses (MA) should provide structured summaries for quick assessment. This study explored a method for determining the methodological quality and bias risk of full-text reviews using abstract information alone. Systematic literature searches for SRs and/or MA about psoriasis were undertaken on MEDLINE, EMBASE, and Cochrane database. For each review, quality, abstract-reporting completeness, full-text methodological quality, and bias risk were evaluated using Preferred Reporting Items for Systematic Reviews and Meta-analyses for abstracts (PRISMA-A), Assessing the Methodological Quality of Systematic Reviews (AMSTAR), and ROBIS tools, respectively. Article-, author-, and journal-derived metadata were systematically extracted from eligible studies using a piloted template, and explanatory variables concerning abstract-reporting quality were assessed using univariate and multivariate-regression models. Two classification models concerning SRs' methodological quality and bias risk were developed based on per-item and total PRISMA-A scores and decision-tree algorithms. This work was supported, in part, by project ICI1400136 (JR). No funding was received from any pharmaceutical company. This study analysed 139 SRs on psoriasis interventions. On average, they featured 56.7% of PRISMA-A items. The mean total PRISMA-A score was significantly higher for high-methodological-quality SRs than for moderate- and low-methodological-quality reviews. SRs with low-bias risk showed higher total PRISMA-A values than reviews with high-bias risk. In the final model, only 'authors per review > 6' (OR: 1.098; 95%CI: 1.012-1.194), 'academic source of funding' (OR: 3.630; 95%CI: 1.788-7.542), and 'PRISMA-endorsed journal' (OR: 4.370; 95%CI: 1.785-10.98) predicted PRISMA-A variability. Reviews with a

OSCAR4: a flexible architecture for chemical text-mining

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Jessop David M

2011-10-01

Full Text Available Abstract The Open-Source Chemistry Analysis Routines (OSCAR software, a toolkit for the recognition of named entities and data in chemistry publications, has been developed since 2002. Recent work has resulted in the separation of the core OSCAR functionality and its release as the OSCAR4 library. This library features a modular API (based on reduction of surface coupling that permits client programmers to easily incorporate it into external applications. OSCAR4 offers a domain-independent architecture upon which chemistry specific text-mining tools can be built, and its development and usage are discussed.

The Neural Correlates of Abstract and Concrete Words: Evidence from Brain-Damaged Patients

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Giorgia Martello

2013-08-01

Full Text Available Neuropsychological and activation studies on the neural correlates of abstract and concrete words have produced contrasting results. The present study explores the anatomical substrates of abstract/concrete words in 22 brain-damaged patients with a single vascular lesion either in the right or left hemisphere. One hundred and twenty (60 concrete and 60 abstract noun triplets were used for a semantic similarity judgment task. We found a significant interaction in word type × group since left temporal brain-damaged patients performed significantly better with concrete than abstract words. Lesion mapping of patients with predominant temporal damage showed that the left superior and middle temporal gyri and the insula were the areas of major overlapping, while the anterior portion of the left temporal lobe was generally spared. Errors on abstract words mainly concerned (although at a non-significant level semantically associate targets, while in the case of concrete words, coordinate targets were significantly more impaired than associate ones. Our results suggest that the left superior and middle temporal gyri and the insula are crucial regions in processing abstract words. They also confirm the hypothesis of a semantic similarity vs. associative organization of concrete and abstract concepts.

Managing nuclear knowledge: IAEA activities and international coordination. Including resource material full text CD-ROM

International Nuclear Information System (INIS)

2005-06-01

The present CD-ROM summarizes some activities carried out by the Departments of Nuclear Energy and Nuclear Safety and Security in the area of nuclear knowledge management in the period 2003-2005. It comprises, as open resource, most of the relevant documents in full text, including policy level documents, reports, presentation material by Member States and meeting summaries. The collection starts with a reprint of the report to the IAEA General Conference 2004 on Nuclear Knowledge [GOV/2004/56-GC(48)/12] summarizing the developments in nuclear knowledge management since the 47th session of the General Conference in 2003 and covers Managing Nuclear Knowledge including safety issues and Information and Strengthening Education and Training for Capacity Building. It contains an excerpt on Nuclear Knowledge from the General Conference Resolution [GC(48)/RES/13] on Strengthening the Agency's Activities Related to Nuclear Science, Technology and Applications. On the CD-ROM itself, all documents can easily be accessed by clicking on their titles on the subject pages (also printed at the end of this Working Material). Part 1 of the CD-ROM covers the activities in the period 2003-2005 and part 2 presents a resource material full text CD-ROM on Managing Nuclear Knowledge issued in October 2003

Sentence retrieval for abstracts of randomized controlled trials

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Chung Grace Y

2009-02-01

Full Text Available Abstract Background The practice of evidence-based medicine (EBM requires clinicians to integrate their expertise with the latest scientific research. But this is becoming increasingly difficult with the growing numbers of published articles. There is a clear need for better tools to improve clinician's ability to search the primary literature. Randomized clinical trials (RCTs are the most reliable source of evidence documenting the efficacy of treatment options. This paper describes the retrieval of key sentences from abstracts of RCTs as a step towards helping users find relevant facts about the experimental design of clinical studies. Method Using Conditional Random Fields (CRFs, a popular and successful method for natural language processing problems, sentences referring to Intervention, Participants and Outcome Measures are automatically categorized. This is done by extending a previous approach for labeling sentences in an abstract for general categories associated with scientific argumentation or rhetorical roles: Aim, Method, Results and Conclusion. Methods are tested on several corpora of RCT abstracts. First structured abstracts with headings specifically indicating Intervention, Participant and Outcome Measures are used. Also a manually annotated corpus of structured and unstructured abstracts is prepared for testing a classifier that identifies sentences belonging to each category. Results Using CRFs, sentences can be labeled for the four rhetorical roles with F-scores from 0.93–0.98. This outperforms the use of Support Vector Machines. Furthermore, sentences can be automatically labeled for Intervention, Participant and Outcome Measures, in unstructured and structured abstracts where the section headings do not specifically indicate these three topics. F-scores of up to 0.83 and 0.84 are obtained for Intervention and Outcome Measure sentences. Conclusion Results indicate that some of the methodological elements of RCTs are

Completion publication of abstracts presented at the scientific meetings of the pan-African pediatric surgical association

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Abdulrasheed A Nasir

2013-01-01

Full Text Available Background: The expected knowledge translation from discovery into practice occurs when presentations from major scientific meetings are published in peer-reviewed literature. The purpose of this study was to determine the extent of complete publication of peer-reviewed articles arising from presentations at the biennial meetings of the Pan-African Pediatric Surgical Association (PAPSA. Materials and Methods: All the abstracts accepted for presentation at the biennial meeting of PAPSA between 2006 and 2010 were identified from the conference abstract booklets and published abstracts in the African Journal of Paediatric Surgery. The presentations were searched for publication in Medline/PubMed, Google Scholar, and African Journal OnLine through October 2012, using key words from the abstract title and names of authors listed in the abstracts. Results: A total of 164 abstracts were accepted for presentation, consisting of 118 (72% oral/podium presentations and 46 (28% poster presentations. One hundred and thirty-three abstracts (81.1% came from African countries and 31 (18.9% from outside Africa. Overall, 49 (29.9% abstracts resulted in full-text publications in 20 peer-reviewed journals. Thirty-eight of the publications were from Africa (representing 28.6% of abstracts from Africa and 11 from outside Africa (33.3% of abstracts from outside Africa. The median time to publication was 15 months [interquartile range (IQR 5-26 months]. The publication rate was statistically significantly correlated to the year of publication (P = 0.016 and the use of comparative statistics in the study (P = 0.005, but not to the study design, study subjects, or institution. The majority of the studies were published in the African Journal of Paediatric Surgery and Pediatric Surgery International (14 and 11 of the 49 reports, respectively. The H-index for international abstracts (median 35, IQR 35-76 was significantly higher than that of African abstracts (14, 3-35 (P

Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts

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Spackman K

2005-04-01

Full Text Available Abstract Background Text-mining can assist biomedical researchers in reducing information overload by extracting useful knowledge from large collections of text. We developed a novel text-mining method based on analyzing the network structure created by symbol co-occurrences as a way to extend the capabilities of knowledge extraction. The method was applied to the task of automatic gene and protein name synonym extraction. Results Performance was measured on a test set consisting of about 50,000 abstracts from one year of MEDLINE. Synonyms retrieved from curated genomics databases were used as a gold standard. The system obtained a maximum F-score of 22.21% (23.18% precision and 21.36% recall, with high efficiency in the use of seed pairs. Conclusion The method performs comparably with other studied methods, does not rely on sophisticated named-entity recognition, and requires little initial seed knowledge.

Large-scale automatic extraction of side effects associated with targeted anticancer drugs from full-text oncological articles.

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Xu, Rong; Wang, QuanQiu

2015-06-01

Targeted anticancer drugs such as imatinib, trastuzumab and erlotinib dramatically improved treatment outcomes in cancer patients, however, these innovative agents are often associated with unexpected side effects. The pathophysiological mechanisms underlying these side effects are not well understood. The availability of a comprehensive knowledge base of side effects associated with targeted anticancer drugs has the potential to illuminate complex pathways underlying toxicities induced by these innovative drugs. While side effect association knowledge for targeted drugs exists in multiple heterogeneous data sources, published full-text oncological articles represent an important source of pivotal, investigational, and even failed trials in a variety of patient populations. In this study, we present an automatic process to extract targeted anticancer drug-associated side effects (drug-SE pairs) from a large number of high profile full-text oncological articles. We downloaded 13,855 full-text articles from the Journal of Oncology (JCO) published between 1983 and 2013. We developed text classification, relationship extraction, signaling filtering, and signal prioritization algorithms to extract drug-SE pairs from downloaded articles. We extracted a total of 26,264 drug-SE pairs with an average precision of 0.405, a recall of 0.899, and an F1 score of 0.465. We show that side effect knowledge from JCO articles is largely complementary to that from the US Food and Drug Administration (FDA) drug labels. Through integrative correlation analysis, we show that targeted drug-associated side effects positively correlate with their gene targets and disease indications. In conclusion, this unique database that we built from a large number of high-profile oncological articles could facilitate the development of computational models to understand toxic effects associated with targeted anticancer drugs. Copyright © 2015 Elsevier Inc. All rights reserved.

How Many Presentations Are Published as Full Papers?

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Kyu Jin Chung

2012-05-01

Full Text Available BackgroundThe publication rate of presentations at medical international meetings has ranged from 11% to 78% with an average of 45%. To date, there are no studies about the final rate of publications at scientific meetings associated with plastic surgery from Korea. The present authors investigated the publication rate among the presentations at meetings associated with plastic surgery.MethodsThe titles and authors of the abstracts from oral and poster presentations were collected from the program books of the Congress of the Korean Society of Plastic and Reconstructive Surgeons (CKSPRS for 2005 to 2007 (58th-63rd. All of the abstracts presented were searched for using PubMed, KoreaMed, KMbase, and Google Scholar. The titles, key words from the titles, and the authors' names were then entered in database programs. The parameters reviewed included the publication rate, type of presentation including running time, affiliation, subspecialty, time to publication, and publication journal.ResultsA total of 1,176 abstracts presented at the CKSPRS from 2005 to 2007 were evaluated. 38.7% of the abstracts, of which oral presentations accounted for 41.0% and poster presentations 34.8%, were published as full papers. The mean time to publication was 15.04 months. Among journals of publication, the Journal of the Korean Society of Plastic and Reconstructive Surgeons was most used.ConclusionsBrilliant ideas and innovative approaches are being discussed at CKSPRS. The 38.7% publication rate found from this research appeared a bit lower than the average rate of medical meetings. If these valuable presentations are not available as full papers, the research would be a waste of time and effort.

Linguistic Representation of Emotions in Japanese and Hungarian: Quantity and Abstractness

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Márton SZEMEREY

2012-05-01

Full Text Available In the present paper, two linguistic aspects of emotion expression are studied in the form they are performed in present day Japanese and Hungarian. After a brief summary on the recent emotional researches connected to Japanese culture and language, the concept of Linguistic Category Model is introduced. The quantitative study presented afterwards investigates emotion expression in terms of amount and abstraction. Translations were used for comparison and the results showed that 1 Japanese tend to use less explicit emotion terms compared to Hungarians and 2 emotion language in Japanese is characterized by the choice of less abstract phrases compared to Hungarian. These findings are discussed in the light of their relevance to former researches of cross-cultural psychology and linguistics.

Concept of Triangle: Examples of Mathematical Abstraction in Two Different Contexts

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Farida Nurhasanah

2017-02-01

Full Text Available In attempt to explain how students learning geometry in concept of triangle, this study explore the learning process of students and the process of solving geometry problems in the topic of triangle.  As known as one of the domain in school of mathematics, geometry has abstract notions to be learnt so that all those notions cannot be just transferred into students’ mind like a bunch of information that should be memorized. Students need to construct those concepts during their learning process. This process of knowledge construction can be considered as an abstraction process. This study aimed to qualitatively compare students’ abstraction process who learn topic of triangle in conventional method of teaching and in van Hiele model of teaching aided by Geometers’ sketchpad. Subjects of this study were junir high school students in grade 7. Based on the aims of this study, this is a qualitative study with grounded theory design. Data were collected through classroom observation, test, and task-based interview. Results of the study show that theoretical abstraction processes tend to dominate classrom with conventional method of teaching while classroom with van Hiele model of teaching aided by Geometers’ sketchpad accommodated empirical abstraction process of the students

Abstract fractional integro-differential equations involving nonlocal initial conditions in α-norm

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Wang Rong-Nian

2011-01-01

Full Text Available Abstract In the present paper, we deal with the Cauchy problems of abstract fractional integro-differential equations involving nonlocal initial conditions in α-norm, where the operator A in the linear part is the generator of a compact analytic semigroup. New criterions, ensuring the existence of mild solutions, are established. The results are obtained by using the theory of operator families associated with the function of Wright type and the semigroup generated by A, Krasnoselkii's fixed point theorem and Schauder's fixed point theorem. An application to a fractional partial integro-differential equation with nonlocal initial condition is also considered. Mathematics subject classification (2000 26A33, 34G10, 34G20

Towards Measuring the Abstractness of State Machines based on Mutation Testing

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Thomas Baar

2017-01-01

Full Text Available Abstract. The notation of state machines is widely adopted as a formalism to describe the behaviour of systems. Usually, multiple state machine models can be developed for the very same software system. Some of these models might turn out to be equivalent, but, in many cases, different state machines describing the same system also differ in their level of abstraction. In this paper, we present an approach to actually measure the abstractness level of state machines w.r.t. a given implemented software system. A state machine is considered to be less abstract when it is conceptionally closer to the implemented system. In our approach, this distance between state machine and implementation is measured by applying coverage criteria known from software mutation testing. Abstractness of state machines can be considered as a new metric. As for other metrics as well, a known value for the abstractness of a given state machine allows to assess its quality in terms of a simple number. In model-based software development projects, the abstract metric can help to prevent model degradation since it can actually measure the semantic distance from the behavioural specification of a system in form of a state machine to the current implementation of the system. In contrast to other metrics for state machines, the abstractness cannot be statically computed based on the state machine’s structure, but requires to execute both state machine and corresponding system implementation. The article is published in the author’s wording. 

Content Abstract Classification Using Naive Bayes

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Latif, Syukriyanto; Suwardoyo, Untung; Aldrin Wihelmus Sanadi, Edwin

2018-03-01

This study aims to classify abstract content based on the use of the highest number of words in an abstract content of the English language journals. This research uses a system of text mining technology that extracts text data to search information from a set of documents. Abstract content of 120 data downloaded at www.computer.org. Data grouping consists of three categories: DM (Data Mining), ITS (Intelligent Transport System) and MM (Multimedia). Systems built using naive bayes algorithms to classify abstract journals and feature selection processes using term weighting to give weight to each word. Dimensional reduction techniques to reduce the dimensions of word counts rarely appear in each document based on dimensional reduction test parameters of 10% -90% of 5.344 words. The performance of the classification system is tested by using the Confusion Matrix based on comparative test data and test data. The results showed that the best classification results were obtained during the 75% training data test and 25% test data from the total data. Accuracy rates for categories of DM, ITS and MM were 100%, 100%, 86%. respectively with dimension reduction parameters of 30% and the value of learning rate between 0.1-0.5.

Perceptual, semantic and affective dimensions of experience of abstract and representational paintings

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Marković Slobodan

2011-01-01

Full Text Available In this study the difference between representational and abstract paintings in judgments on perceptual, semantic and affective dimensions was investigated. Two groups of participants judged the sets of representational and abstract paintings on three groups of dimensions: perceptual (Form, Color, Space and Complexity, semantic (Illusion-Construction of Reality, Expression, Ideology and Decoration, and affective (Hedonic Tone, Arousal, Relaxation and Regularity. The results have shown that representational paintings have higher judgments on the perceptual dimensions of Form and Complexity, the semantic dimension of the Illusion of Reality (the opposite pole of the Construction of Reality, and the affective dimension of Regularity. On the other hand, abstract paintings have higher judgments on the perceptual dimension of Color, the semantic dimensions of Construction of Reality (the opposite pole of the Illusion of Reality and Expression, and the affective dimension Arousal. A discriminant analysis indicated that all three sets of dimensions are relatively good predictors of the classification of representational and abstract paintings (61-100%. The results suggest that the subjective categorization of paintings is generally based on the recognizability of pictorial content (representational vs. abstract, but some formal or stylistic properties play a role in the categorization, as well: some expressionistic representational paintings were classified in an abstract category, and some geometrically abstract paintings were classified as representational.

Dependability of results in conference abstracts of randomized controlled trials in ophthalmology and author financial conflicts of interest as a factor associated with full publication.

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Saldanha, Ian J; Scherer, Roberta W; Rodriguez-Barraquer, Isabel; Jampel, Henry D; Dickersin, Kay

2016-04-26

Discrepancies between information in conference abstracts and full publications describing the same randomized controlled trial have been reported. The association between author conflicts of interest and the publication of randomized controlled trials is unclear. The objective of this study was to use randomized controlled trials in ophthalmology to evaluate (1) the agreement in the reported main outcome results by comparing abstracts and corresponding publications and (2) the association between the author conflicts of interest and publication of the results presented in the abstracts. We considered abstracts describing results of randomized controlled trials presented at the 2001-2004 Association for Research in Vision and Ophthalmology conferences as eligible for our study. Through electronic searching and by emailing abstract authors, we identified the earliest publication (journal article) containing results of each abstract's main outcome through November 2013. We categorized the discordance between the main outcome results in the abstract and its paired publication as qualitative (a difference in the direction of the estimated effect) or as quantitative. We used the Association for Research in Vision and Ophthalmology categories for conflicts of interest: financial interest, employee of business with interest, consultant to business with interest, inventor/developer with patent, and receiving ≥ 1 gift from industry in the past year. We calculated the relative risks (RRs) of publication associated with the categories of conflicts of interest for abstracts with results that were statistically significant, not statistically significant, or not reported. We included 513 abstracts, 230 (44.8 %) of which reached publication. Among the 86 pairs with the same main outcome domain at the same time point, 47 pairs (54.7 %) had discordant results: qualitative discordance in 7 pairs and quantitative discordance in 40 pairs. Quantitative discordance was indicated

Looking for the Forest and the Trees: Exercises to Provoke Abstract Thinking

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Boriana Marintcheva

2013-02-01

Full Text Available It is probably hard to find an educator who would hesitate to agree that abstract thinking and comfort in asking questions are pivotal to scientific inquiry and advancement of knowledge. Yet, most of the time the mechanics of fostering these skills is as challenging as photographing dense fog.  As biologists we constantly reevaluate what we know, how we think about what we know, and how we communicate our knowledge about the living world. These short engaging exercises challenge students to appreciate the central role of abstract thinking and question asking in scientific inquiry.  In the first exercise the classroom is presented with an optical illusion image and challenged to evaluate it using concrete and abstract thinking tools. In a follow up exercise, students are prompted to evaluate the process of making assumptions, asking questions and coming to conclusions using the example of a small popular culture article. Both exercises are used as primers to stimulate discussion emphasizing that abstract thinking and question asking are critical tools in the tool set of 21st century budding biologists.

Pacifier Overuse and Conceptual Relations of Abstract and Emotional Concepts

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Laura Barca

2017-12-01

Full Text Available This study explores the impact of the extensive use of an oral device since infancy (pacifier on the acquisition of concrete, abstract, and emotional concepts. While recent evidence showed a negative relation between pacifier use and children's emotional competence (Niedenthal et al., 2012, the possible interaction between use of pacifier and processing of emotional and abstract language has not been investigated. According to recent theories, while all concepts are grounded in sensorimotor experience, abstract concepts activate linguistic and social information more than concrete ones. Specifically, the Words As Social Tools (WAT proposal predicts that the simulation of their meaning leads to an activation of the mouth (Borghi and Binkofski, 2014; Borghi and Zarcone, 2016. Since the pacifier affects facial mimicry forcing mouth muscles into a static position, we hypothesize its possible interference on acquisition/consolidation of abstract emotional and abstract not-emotional concepts, which are mainly conveyed during social and linguistic interactions, than of concrete concepts. Fifty-nine first grade children, with a history of different frequency of pacifier use, provided oral definitions of the meaning of abstract not-emotional, abstract emotional, and concrete words. Main effect of concept type emerged, with higher accuracy in defining concrete and abstract emotional concepts with respect to abstract not-emotional concepts, independently from pacifier use. Accuracy in definitions was not influenced by the use of pacifier, but correspondence and hierarchical clustering analyses suggest that the use of pacifier differently modulates the conceptual relations elicited by abstract emotional and abstract not-emotional. While the majority of the children produced a similar pattern of conceptual relations, analyses on the few (6 children who overused the pacifier (for more than 3 years showed that they tend to distinguish less clearly between

A fully-abstract semantics of lambda-mu in the pi-calculus

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Steffen van Bakel

2014-09-01

Full Text Available We study the lambda-mu-calculus, extended with explicit substitution, and define a compositional output-based interpretation into a variant of the pi-calculus with pairing that preserves single-step explicit head reduction with respect to weak bisimilarity. We define four notions of weak equivalence for lambda-mu – one based on weak reduction, two modelling weak head-reduction and weak explicit head reduction (all considering terms without weak head-normal form equivalent as well, and one based on weak approximation – and show they all coincide. We will then show full abstraction results for our interpretation for the weak equivalences with respect to weak bisimilarity on processes.

Utilizing Gaze Behavior for Inferring Task Transitions Using Abstract Hidden Markov Models

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Daniel Fernando Tello Gamarra

2016-12-01

Full Text Available We demonstrate an improved method for utilizing observed gaze behavior and show that it is useful in inferring hand movement intent during goal directed tasks. The task dynamics and the relationship between hand and gaze behavior are learned using an Abstract Hidden Markov Model (AHMM. We show that the predicted hand movement transitions occur consistently earlier in AHMM models with gaze than those models that do not include gaze observations.

Les rapports de l’art abstrait (Kandinsky, Klee, Mondrian avec les tendances d’abstraction de l’art sacré / The Connections of Abstract Art (Kandinsky, Klee, Mondrian with the Abstractization Tendencies of Sacred Art

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Gabriel Badea

2016-11-01

Full Text Available The main purpose of this paper is to study the connections that can be established between the modern abstractionism and the abstract tendencies from other historical eras. In the first part I will present three distinct interpretations: the first direction is based on authors as Mircea Eliade and Roger Lipsey, who see modern art through the links still alive between art and religion, from a syncretic perspective, or, after Eliade’s expression, based on a creative hermeneutics. The second direction is represented by the work of Adorno, Compagnon, Greenberg, Lyotard, for whom the modern art is a manifestation of radical discontinuity in relation to the art of the past, and the emergence of abstractionism is due primarily to a historical necessity (the increasing rupture between form and content, the increased autonomy of the sensible over the intelligible. The third direction is represented to Wilhelm Worringer, whose work (Abstraktion und Einfühlung, 1907 predates the emergence of the first abstract paintings, but relying on the German aesthetic tradition, manages to go beyond the threshold distinction between figurative and abstract, thus identifying a type of Einfühlung art and another of abstract type, namely the predominance of one or the other in different historical contexts and civilizational patterns. In the second part of the paper I will refer to instances of the spirit of abstraction in the case of Byzantine sacred art, especially in the footsteps of Plotinian aesthetics and as a result of the iconoclastic crisis. In the last part, I will present the key ideas for three major representatives of abstractionism (Kandinsky, Klee, Mondrian and the survival of the concepts of sacred art in their works and art theories.

Affective priming using facial expressions modulates liking for abstract art.

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Albert Flexas

Full Text Available We examined the influence of affective priming on the appreciation of abstract artworks using an evaluative priming task. Facial primes (showing happiness, disgust or no emotion were presented under brief (Stimulus Onset Asynchrony, SOA = 20 ms and extended (SOA = 300 ms conditions. Differences in aesthetic liking for abstract paintings depending on the emotion expressed in the preceding primes provided a measure of the priming effect. The results showed that, for the extended SOA, artworks were liked more when preceded by happiness primes and less when preceded by disgust primes. Facial expressions of happiness, though not of disgust, exerted similar effects in the brief SOA condition. Subjective measures and a forced-choice task revealed no evidence of prime awareness in the suboptimal condition. Our results are congruent with findings showing that the affective transfer elicited by priming biases evaluative judgments, extending previous research to the domain of aesthetic appreciation.

Does a Graphical Abstract Bring More Visibility to Your Paper?

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Eva-Maria Pferschy-Wenzig

2016-09-01

Full Text Available A graphical abstract (GA represents a piece of artwork that is intended to summarize the main findings of an article for readers at a single glance. Many publishers currently encourage authors to supplement their articles with GAs, in the hope that such a convenient visual summary will facilitate readers with a clearer outline of papers that are of interest and will result in improved overall visibility of the respective publication. To test this assumption, we statistically compared publications with or without GA published in Molecules between March 2014 and March 2015 with regard to several output parameters reflecting visibility. Contrary to our expectations, manuscripts published without GA performed significantly better in terms of PDF downloads, abstract views, and total citations than manuscripts with GA. To the best of our knowledge, this is the first empirical study on the effectiveness of GA for attracting attention to scientific publications.

Enhancements to the NASA Astrophysics Science Information and Abstract Service

Science.gov (United States)

Kurtz, M. J.; Eichhorn, G.; Accomazzi, A.; Grant, C. S.; Murray, S. S.

1995-05-01

The NASA Astrophysics Data System Astrophysics Science Information and Abstract Service, the extension of the ADS Abstract Service continues rapidly to expand in both use and capabilities. Each month the service is used by about 4,000 different people, and returns about 1,000,000 pieces of bibliographic information. Among the recent additions to the system are: 1. Whole Text Access. In addition to the ApJ Letters we now have whole text for the ApJ on-line, soon we will have AJ and Rev. Mexicana. Discussions with other publishers are in progress. 2. Space Instrumentation Database. We now provide a second abstract service, covering papers related to space instruments. This is larger than the astronomy and astrophysics database in terms of total abstracts. 3. Reference Books and Historical Journals. We have begun putting the SAO Annals and the HCO Annals on-line. We have put the Handbook of Space Astronomy and Astrophysics by M.V. Zombeck (Cambridge U.P.) on-line. 4. Author Abstracts. We can now include original abstracts in addition to those we get from the NASA STI Abstracts Database. We have included abstracts for A&A in collaboration with the CDS in Strasbourg, and are collaborating with the AAS and the ASP on others. We invite publishers and editors of journals and conference proceedings to include their original abstracts in our service; send inquiries via e-mail to ads@cfa.harvard.edu. 5. Author Notes. We now accept notes and comments from authors of articles in our database. These are arbitrary html files and may contain pointers to other WWW documents, they are listed along with the abstracts, whole text, and data available in the index listing for every reference. The ASIAS is available at: http://adswww.harvard.edu/

Abstract Art and Cortical Motor Activation: an EEG study.

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Maria Alessandra eUmilta'

2012-11-01

Full Text Available The role of the motor system in the perception of visual art remains to be better understood. Earlier studies on the visual perception of abstract art (from Gestalt theory, as in Arnheim 1954 and 1988, to balance preference studies as in Locher and Stappers, 2002, and more recent work by Locher et al 2007, Redies, 2007, and Taylor et al, 2011, neglected the question, while the field of neuroesthetics (Zeki, 1999; Ramachandran and Hirstein, 1999 mostly concentrated on figurative works. Much recent work has demonstrated the multimodality of vision, encompassing the activation of motor, somatosensory and viscero-motor brain regions. The present study investigated whether the observation of high-resolution digitized static images of abstract paintings by Lucio Fontana is associated with specific cortical motor activation in the beholder’s brain. Mu rhythm suppression was evoked by the observation of original art works but not by control stimuli (as in the case of graphically modified versions of these works. Most interestingly, previous visual exposure to the stimuli did not affect the mu rhythm suppression induced by their observation. The present results clearly show the involvement of the cortical motor system in the viewing of static abstract art works.

THE STUDENTS’ PERCEPTIONS OF AUTHENTIC TEXTS-BASED TRANSLATION

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Rusiana .

2017-12-01

Full Text Available Translation requires lots of practice. As it is generally known, authentic texts provide fruitful experience for students to translate either Indonesian-English or vice versa. Authentic texts give many real uses of language in varied meaningful contexts The texts used were advertisement, abstract, local stories, tourist attraction, community service and project for money. This research is aimed at investigating whether the use of authentic texts benefits the students and describing the students’ perceptions toward the use of authentic texts in Translation class. It is a qualitative research. Questionnaires were used to obtain the students’ perceptions on the use of authentic texts in translation. The findings show that authentic texts-based translation benefits students in experiencing better translation. Advertisement was considered to be the most relevant text. On the contrary, they find it difficult to cope with authentic texts particularly dealing with words/terms/vocabulary, meanings, culture, and grammar. The recommendations are that the students have to be exposed to many authentic texts of varied topics in both English and Indonesian in order that they understand both the SL and TL well. For further researchers, it would be possible to research on the influence of authentic texts based translation on the students’ translation skill.

Fine-grained semantic categorization across the abstract and concrete domains.

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Marta Ghio

Full Text Available A consolidated approach to the study of the mental representation of word meanings has consisted in contrasting different domains of knowledge, broadly reflecting the abstract-concrete dichotomy. More fine-grained semantic distinctions have emerged in neuropsychological and cognitive neuroscience work, reflecting semantic category specificity, but almost exclusively within the concrete domain. Theoretical advances, particularly within the area of embodied cognition, have more recently put forward the idea that distributed neural representations tied to the kinds of experience maintained with the concepts' referents might distinguish conceptual meanings with a high degree of specificity, including those within the abstract domain. Here we report the results of two psycholinguistic rating studies incorporating such theoretical advances with two main objectives: first, to provide empirical evidence of fine-grained distinctions within both the abstract and the concrete semantic domains with respect to relevant psycholinguistic dimensions; second, to develop a carefully controlled linguistic stimulus set that may be used for auditory as well as visual neuroimaging studies focusing on the parametrization of the semantic space beyond the abstract-concrete dichotomy. Ninety-six participants rated a set of 210 sentences across pre-selected concrete (mouth, hand, or leg action-related and abstract (mental state-, emotion-, mathematics-related categories, with respect either to different semantic domain-related scales (rating study 1, or to concreteness, familiarity, and context availability (rating study 2. Inferential statistics and correspondence analyses highlighted distinguishing semantic and psycholinguistic traits for each of the pre-selected categories, indicating that a simple abstract-concrete dichotomy is not sufficient to account for the entire semantic variability within either domains.

Esho 2005. 22nd annual meeting of the European society for hyperthermic oncology. Book of abstracts

International Nuclear Information System (INIS)

Rehak, P.H.; Tscheliessnigg, K.H.

2005-01-01

Full text: In this book of abstracts were treated the role of hyperthermia in oncology, the combination of hyperthermia with radiotherapy and chemotherapy, the risk factors and the toxicity of regional hyperthermia combined with radiochemotherapy and the hyperthermia treatment planning in neoplasms using invasive thermometry and the prognostic significance for clinical outcome. (botek)

Clustering, Hierarchical Organization, and the Topography of Abstract and Concrete Nouns

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Joshua eTroche

2014-04-01

Full Text Available The empirical study of language has historically relied heavily upon concrete word stimuli. By definition, concrete words evoke salient perceptual associations that fit well within feature-based, sensorimotor models of word meaning. In contrast, many theorists argue that abstract words are disembodied in that their meaning is mediated through language. We investigated word meaning as distributed in multidimensional space using hierarchical cluster analysis. Participants (N=365 rated target words (n=400 English nouns across 12 cognitive dimensions (e.g., polarity, ease of teaching, emotional valence. Factor reduction revealed three latent factors, corresponding roughly to perceptual salience, affective association, and magnitude. We plotted the original 400 words for the three latent factors. Abstract and concrete words showed overlap in their topography but also differentiated themselves in semantic space. This topographic approach to word meaning offers a unique perspective to word concreteness.

UNDERSTANDING TENOR IN SPOKEN TEXTS IN YEAR XII ENGLISH TEXTBOOK TO IMPROVE THE APPROPRIACY OF THE TEXTS

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Noeris Meristiani

2011-07-01

Full Text Available ABSTRACT: The goal of English Language Teaching is communicative competence. To reach this goal students should be supplied with good model texts. These texts should consider the appropriacy of language use. By analyzing the context of situation which is focused on tenor the meanings constructed to build the relationships among the interactants in spoken texts can be unfolded. This study aims at investigating the interpersonal relations (tenor of the interactants in the conversation texts as well as the appropriacy of their realization in the given contexts. The study was conducted under discourse analysis by applying a descriptive qualitative method. There were eight conversation texts which function as examples in five chapters of a textbook. The data were analyzed by using lexicogrammatical analysis, described, and interpreted contextually. Then, the realization of the tenor of the texts was further analyzed in terms of appropriacy to suggest improvement. The results of the study show that the tenor indicates relationships between friend-friend, student-student, questioners-respondents, mother-son, and teacher-student; the power is equal and unequal; the social distances show frequent contact, relatively frequent contact, relatively low contact, high and low affective involvement, using informal, relatively informal, relatively formal, and formal language. There are also some indications of inappropriacy of tenor realization in all texts. It should be improved in the use of degree of formality, the realization of societal roles, status, and affective involvement. Keywords: context of situation, tenor, appropriacy.

The Components of Abstracts: the Logical Structure of Abstractsin the Area of Technical Sciences

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Nina Jamar

2014-04-01

Full Text Available ABSTRACTPurpose: The main purpose of this research was to find out what kind of structure would be the most appropriate for abstracts in the area of technical sciences, and on the basis of these findings develop guidelines for their writing.Methodology/approach: First, the components of abstracts published in journals were analyzed. Then the prototypes and recommended improved abstracts were presented. Third, the satisfaction of the readers with the different forms of abstracts was examined. According to the results of these three parts of the research, the guidelines for writing abstracts in the area of technical sciences were developed.Results: The results showed that it is possible to determine the optimum structure for abstracts from the area of technical sciences. This structure should follow the known IMRD format or BMRC structure according to the coding scheme.Research limitations: The presented research included in the analysis only abstracts from several areas that represent technical studies. In order to develop the guidelines for writing abstracts more broadly, the research should be extended with at least one more area from the natural sciences and two areas from social sciences and humanities.Original/practical implications: It is important to emphasize that even if the guidelines for writing abstracts by the individual journal exist, authors do not always take them into account. Therefore, it is important that the abstracts that are actually published in journals were analysed. It is also important that with the development of guidelines for writing abstracts the opinion of researchers was also taken into account.

Early Career Researchers Demand Full-text and Rely on Google to Find Scholarly Sources

OpenAIRE

Richard Hayman

2017-01-01

A Review of: Nicholas, D., Boukacem-Zeghmouri, C., Rodríguez-Bravo, B., Xu, J., Watkinson, A., Abrizah, A., Herman, E., & Świgoń, M. (2017). Where and how early career researchers find scholarly information. Learned Publishing, 30(1), 19-29. http://dx.doi.org/10.1002/leap.1087 Abstract Objective – To examine the attitudes and information behaviours of early career researchers (ECRs) when locating scholarly information. Design – Qualitative longitudinal study. Setting – R...

Content-rich biological network constructed by mining PubMed abstracts

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Sharp Burt M

2004-10-01

Full Text Available Abstract Background The integration of the rapidly expanding corpus of information about the genome, transcriptome, and proteome, engendered by powerful technological advances, such as microarrays, and the availability of genomic sequence from multiple species, challenges the grasp and comprehension of the scientific community. Despite the existence of text-mining methods that identify biological relationships based on the textual co-occurrence of gene/protein terms or similarities in abstract texts, knowledge of the underlying molecular connections on a large scale, which is prerequisite to understanding novel biological processes, lags far behind the accumulation of data. While computationally efficient, the co-occurrence-based approaches fail to characterize (e.g., inhibition or stimulation, directionality biological interactions. Programs with natural language processing (NLP capability have been created to address these limitations, however, they are in general not readily accessible to the public. Results We present a NLP-based text-mining approach, Chilibot, which constructs content-rich relationship networks among biological concepts, genes, proteins, or drugs. Amongst its features, suggestions for new hypotheses can be generated. Lastly, we provide evidence that the connectivity of molecular networks extracted from the biological literature follows the power-law distribution, indicating scale-free topologies consistent with the results of previous experimental analyses. Conclusions Chilibot distills scientific relationships from knowledge available throughout a wide range of biological domains and presents these in a content-rich graphical format, thus integrating general biomedical knowledge with the specialized knowledge and interests of the user. Chilibot http://www.chilibot.net can be accessed free of charge to academic users.

Abstracts of the International Congress of Research Center in Sports Sciences, Health Sciences & Human Development (2016

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Vitor Reis

2017-06-01

Full Text Available The papers published in this book of abstracts / proceedings were submitted to the Scientific Commission of the International Congress of Research Center in Sports Sciences, Health Sciences & Human Development, held on 11 and 12 November 2016, at the University of Évora, Évora, Portugal, under the topic of Exercise and Health, Sports and Human Development. The content of the abstracts is solely and exclusively of its authors responsibility. The editors and the Scientific Committee of the International Congress of Research Center in Sports Sciences, Health Sciences & Human Development do not assume any responsibility for the opinions and statements expressed by the authors. Partial reproduction of the texts and their use without commercial purposes is allowed, provided the source / reference is duly mentioned.

Full aperture backscatter diagnostic for the NIF laser facility (abstract)

International Nuclear Information System (INIS)

Sewall, Noel; Lewis, Izzy; Kirkwood, Robert; Moody, John; Celeste, John

2001-01-01

The current schemes for achieving ignition on the National Ignition Facility require efficient coupling of energy from 192 laser beams to the deuterium--tritium fuel capsule. Each laser beam must propagate through a long scalelength plasma region before being converted to x rays (indirect drive) or being absorbed on the capsule (direct drive). Laser-plasma instabilities such as stimulated Brillouin and stimulated Raman scattering (SBS and SRS) will scatter a fraction of the incident laser energy out of the target leading to an overall reduction in the coupling efficiency. It is important to measure the character of this scattered light in order to understand it and to develop methods for reducing it to acceptable levels. We are designing a system called the full aperature backscatter diagnostic with the capability to measure the time-dependent amplitude and spectral content of the light which is backscattered through the incident beam focusing optic. The backscattered light will be collected over about 85% of the full beam aperture and separated into the SBS wavelength band (348--354 nm) and the SRS wavelength band (400--700 nm). Spectrometers coupled to streak cameras will provide time-resolved spectra for both scattered light components. The scattered light amplitude will be measured with fast and slow diodes. The entire system will be routinely calibrated. Analysis of the data will provide important information for reducing scattered power, achieving power balance, and finally achieving ignition

A Contrastive Analysis of the Links of Textuality in Abstracts Written by Persian and English Writers in Clinical Psychology Journals

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Abbas Mehrabi Boshrabadi

2014-07-01

Full Text Available It is generally agreed today that lexical cohesion is one of the fundamental elements of the text texture achieved through lexical semantic relations dominating the arrangement of propositional units in a text. Accordingly, this study sought to compare and contrast the textual links or lexical cohesive devices enlisted in the psychological abstracts written by Persian and English writers. To this end, 40 abstracts from Persian and English articles, 20 in each language, published in clinical psychology journals were randomly selected. The framework serving as tertium comprationis for analyzing lexical cohesion markers was derived from Halliday and Hasan’s (1976 model [Halliday, M. A. K., & Hasan, R. (1976. Cohesion in English. London: Longman]. A frequency count analysis was employed to gauge the number of occurrences of cohesive links in the selected corpus. The results revealed that lexical links of synonymy and repetition were more frequent than other cohesive devices in both English and Persian abstracts.

Esho 2005. 22{sup nd} annual meeting of the European society for hyperthermic oncology. Book of abstracts

Energy Technology Data Exchange (ETDEWEB)

Rehak, P H; Tscheliessnigg, K H [Medical University of Graz, Department of Surgery, Graz (Austria)

2005-07-01

Full text: In this book of abstracts were treated the role of hyperthermia in oncology, the combination of hyperthermia with radiotherapy and chemotherapy, the risk factors and the toxicity of regional hyperthermia combined with radiochemotherapy and the hyperthermia treatment planning in neoplasms using invasive thermometry and the prognostic significance for clinical outcome. (botek)

ScienceCentral: open access full-text archive of scientific journals based on Journal Article Tag Suite regardless of their languages.

Science.gov (United States)

Huh, Sun

2013-01-01

ScienceCentral, a free or open access, full-text archive of scientific journal literature at the Korean Federation of Science and Technology Societies, was under test in September 2013. Since it is a Journal Article Tag Suite-based full text database, extensible markup language files of all languages can be presented, according to Unicode Transformation Format 8-bit encoding. It is comparable to PubMed Central: however, there are two distinct differences. First, its scope comprises all science fields; second, it accepts all language journals. Launching ScienceCentral is the first step for free access or open access academic scientific journals of all languages to leap to the world, including scientific journals from Croatia.

Abstraction and climate change in Europe

OpenAIRE

Laize, Cedric

2014-01-01

Invited oral presentation at the British Hydrological Society National meeting on "Hydroecology and water abstraction: science, practice and licence reform", Birmingham, 18 December 2013. Link below: full paper in River Research and Applications (Laize et al., 2014)

Investigating the similarities of some cultural factors in Ghabousnameh withe Avesta and Pahlavi texts

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Morad Esmaeeli

2016-09-01

Full Text Available Abstract: Qaboosnameh is one of the oldest and most important pre-Mogul invasion prose work that is rich with Iranian culture and traditions. The Iranian cultural identity is greatly and appropriately reflected in this work. The current paper tries to investigate seven important features of this work of literature. By using text analysis method and also document study approach, the authors of the current research paper did their best to conduct extensive research on pre-Islamic texts hoping to present a clearer picture of the country at the time of invasion and cultural exchange.

Automatically identifying gene/protein terms in MEDLINE abstracts.

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Yu, Hong; Hatzivassiloglou, Vasileios; Rzhetsky, Andrey; Wilbur, W John

2002-01-01

Natural language processing (NLP) techniques are used to extract information automatically from computer-readable literature. In biology, the identification of terms corresponding to biological substances (e.g., genes and proteins) is a necessary step that precedes the application of other NLP systems that extract biological information (e.g., protein-protein interactions, gene regulation events, and biochemical pathways). We have developed GPmarkup (for "gene/protein-full name mark up"), a software system that automatically identifies gene/protein terms (i.e., symbols or full names) in MEDLINE abstracts. As a part of marking up process, we also generated automatically a knowledge source of paired gene/protein symbols and full names (e.g., LARD for lymphocyte associated receptor of death) from MEDLINE. We found that many of the pairs in our knowledge source do not appear in the current GenBank database. Therefore our methods may also be used for automatic lexicon generation. GPmarkup has 73% recall and 93% precision in identifying and marking up gene/protein terms in MEDLINE abstracts. A random sample of gene/protein symbols and full names and a sample set of marked up abstracts can be viewed at http://www.cpmc.columbia.edu/homepages/yuh9001/GPmarkup/. Contact. hy52@columbia.edu. Voice: 212-939-7028; fax: 212-666-0140.

Text data extraction for a prospective, research-focused data mart: implementation and validation

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Hinchcliff Monique

2012-09-01

Full Text Available Abstract Background Translational research typically requires data abstracted from medical records as well as data collected specifically for research. Unfortunately, many data within electronic health records are represented as text that is not amenable to aggregation for analyses. We present a scalable open source SQL Server Integration Services package, called Regextractor, for including regular expression parsers into a classic extract, transform, and load workflow. We have used Regextractor to abstract discrete data from textual reports from a number of ‘machine generated’ sources. To validate this package, we created a pulmonary function test data mart and analyzed the quality of the data mart versus manual chart review. Methods Eleven variables from pulmonary function tests performed closest to the initial clinical evaluation date were studied for 100 randomly selected subjects with scleroderma. One research assistant manually reviewed, abstracted, and entered relevant data into a database. Correlation with data obtained from the automated pulmonary function test data mart within the Northwestern Medical Enterprise Data Warehouse was determined. Results There was a near perfect (99.5% agreement between results generated from the Regextractor package and those obtained via manual chart abstraction. The pulmonary function test data mart has been used subsequently to monitor disease progression of patients in the Northwestern Scleroderma Registry. In addition to the pulmonary function test example presented in this manuscript, the Regextractor package has been used to create cardiac catheterization and echocardiography data marts. The Regextractor package was released as open source software in October 2009 and has been downloaded 552 times as of 6/1/2012. Conclusions Collaboration between clinical researchers and biomedical informatics experts enabled the development and validation of a tool (Regextractor to parse, abstract and assemble

The Dayton Agenda: Full Text

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Journal of Research on Christian Education, 2009

2009-01-01

In November 1997, 140 researchers, administrators, and others interested in the support of nonpublic schools gathered at the University of Dayton to develop a research agenda for American private education. What developed over the several hours of intense sessions was an agenda that has given direction to researchers well into the 21st century.…

The challenge of the abstract mind: symbols, signs and notational systems in European prehistory

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Harald Haarmann

2005-12-01

Full Text Available Since the earliest manifestations of symbolic activity in modern humans (Homo sapiens sapiens in the Upper Palaeolithic, there is evidence for two independent cognitive procedures, for the production of representational images (naturalistic pictures or sculptures and of abstract signs. The use of signs and symbols is attested for archaic humans (Homo neanderthalensis and for Homo erectus while art in naturalistic style is an innovation among modern humans. The symbiotic interaction of the two symbolic capacities is illustrated for the visual heritage of Palaeolithic cave paintings in Southwestern Europe, for rock engravings in the Italian Alps (Val Camonica and for the vivid use of signs and symbols in Southeastern Europe during the Neolithic. Around 5500 BC, sign use in Southeastern Europe reached a sophisticated stage of organization as to produce the earliest writing system of mankind. Since abstractness is the main theme in the visual heritage of the region, this script, not surprisingly, is composed of predominantly abstract signs.

The BioC-BioGRID corpus: full text articles annotated for curation of protein–protein and genetic interactions

Science.gov (United States)

Kim, Sun; Chatr-aryamontri, Andrew; Chang, Christie S.; Oughtred, Rose; Rust, Jennifer; Wilbur, W. John; Comeau, Donald C.; Dolinski, Kara; Tyers, Mike

2017-01-01

A great deal of information on the molecular genetics and biochemistry of model organisms has been reported in the scientific literature. However, this data is typically described in free text form and is not readily amenable to computational analyses. To this end, the BioGRID database systematically curates the biomedical literature for genetic and protein interaction data. This data is provided in a standardized computationally tractable format and includes structured annotation of experimental evidence. BioGRID curation necessarily involves substantial human effort by expert curators who must read each publication to extract the relevant information. Computational text-mining methods offer the potential to augment and accelerate manual curation. To facilitate the development of practical text-mining strategies, a new challenge was organized in BioCreative V for the BioC task, the collaborative Biocurator Assistant Task. This was a non-competitive, cooperative task in which the participants worked together to build BioC-compatible modules into an integrated pipeline to assist BioGRID curators. As an integral part of this task, a test collection of full text articles was developed that contained both biological entity annotations (gene/protein and organism/species) and molecular interaction annotations (protein–protein and genetic interactions (PPIs and GIs)). This collection, which we call the BioC-BioGRID corpus, was annotated by four BioGRID curators over three rounds of annotation and contains 120 full text articles curated in a dataset representing two major model organisms, namely budding yeast and human. The BioC-BioGRID corpus contains annotations for 6409 mentions of genes and their Entrez Gene IDs, 186 mentions of organism names and their NCBI Taxonomy IDs, 1867 mentions of PPIs and 701 annotations of PPI experimental evidence statements, 856 mentions of GIs and 399 annotations of GI evidence statements. The purpose, characteristics and possible future

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.

Science.gov (United States)

Verspoor, Karin; Cohen, Kevin Bretonnel; Lanfranchi, Arrick; Warner, Colin; Johnson, Helen L; Roeder, Christophe; Choi, Jinho D; Funk, Christopher; Malenkiy, Yuriy; Eckert, Miriam; Xue, Nianwen; Baumgartner, William A; Bada, Michael; Palmer, Martha; Hunter, Lawrence E

2012-08-17

We introduce the linguistic annotation of a corpus of 97 full-text biomedical publications, known as the Colorado Richly Annotated Full Text (CRAFT) corpus. We further assess the performance of existing tools for performing sentence splitting, tokenization, syntactic parsing, and named entity recognition on this corpus. Many biomedical natural language processing systems demonstrated large differences between their previously published results and their performance on the CRAFT corpus when tested with the publicly available models or rule sets. Trainable systems differed widely with respect to their ability to build high-performing models based on this data. The finding that some systems were able to train high-performing models based on this corpus is additional evidence, beyond high inter-annotator agreement, that the quality of the CRAFT corpus is high. The overall poor performance of various systems indicates that considerable work needs to be done to enable natural language processing systems to work well when the input is full-text journal articles. The CRAFT corpus provides a valuable resource to the biomedical natural language processing community for evaluation and training of new models for biomedical full text publications.

Moral concepts set decision strategies to abstract values.

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Svenja Caspers

Full Text Available Persons have different value preferences. Neuroimaging studies where value-based decisions in actual conflict situations were investigated suggest an important role of prefrontal and cingulate brain regions. General preferences, however, reflect a superordinate moral concept independent of actual situations as proposed in psychological and socioeconomic research. Here, the specific brain response would be influenced by abstract value systems and moral concepts. The neurobiological mechanisms underlying such responses are largely unknown. Using functional magnetic resonance imaging (fMRI with a forced-choice paradigm on word pairs representing abstract values, we show that the brain handles such decisions depending on the person's superordinate moral concept. Persons with a predominant collectivistic (altruistic value system applied a "balancing and weighing" strategy, recruiting brain regions of rostral inferior and intraparietal, and midcingulate and frontal cortex. Conversely, subjects with mainly individualistic (egocentric value preferences applied a "fight-and-flight" strategy by recruiting the left amygdala. Finally, if subjects experience a value conflict when rejecting an alternative congruent to their own predominant value preference, comparable brain regions are activated as found in actual moral dilemma situations, i.e., midcingulate and dorsolateral prefrontal cortex. Our results demonstrate that superordinate moral concepts influence the strategy and the neural mechanisms in decision processes, independent of actual situations, showing that decisions are based on general neural principles. These findings provide a novel perspective to future sociological and economic research as well as to the analysis of social relations by focusing on abstract value systems as triggers of specific brain responses.

Annotating abstract pronominal anaphora in the DAD project

DEFF Research Database (Denmark)

Navarretta, Costanza; Olsen, Sussi Anni

2008-01-01

n this paper we present an extension of the MATE/GNOME annotation scheme for anaphora (Poesio 2004) which accounts for abstract anaphora in Danish and Italian. By abstract anaphora it is here meant pronouns whose linguistic antecedents are verbal phrases, clauses and discourse segments. The exten......n this paper we present an extension of the MATE/GNOME annotation scheme for anaphora (Poesio 2004) which accounts for abstract anaphora in Danish and Italian. By abstract anaphora it is here meant pronouns whose linguistic antecedents are verbal phrases, clauses and discourse segments....... The extended scheme, which we call the DAD annotation scheme, allows to annotate information about abstract anaphora which is important to investigate their use, see Webber (1988), Gundel et al. (2003), Navarretta (2004) and which can influence their automatic treatment. Intercoder agreement scores obtained...... by applying the DAD annotation scheme on texts and dialogues in the two languages are given and show that th information proposed in the scheme can be recognised in a reliable way....

Action Research on a WebQuest as an Instructional Tool for Writing Abstracts of Research Articles

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Krismiyati Latuperissa

2012-08-01

Full Text Available The massive growth of and access to information technology (IT has enabled the integration of technology into classrooms. One such integration is the use of WebQuests as an instructional tool in teaching targeted learning activities such as writing abstracts of research articles in English for English as a Foreign Language (EFL learners. In the academic world, writing an abstract of a research paper or final project in English can be challenging for EFL students. This article presents an action research project on the process and outcomes of using a WebQuest designed to help 20 Indonesian university IT students write a research article’s abstract in English. Findings reveal that despite positive feedback, changes need to be made to make the WebQuest a more effective instructional tool for the purpose it was designed.

Multivariate Cross-Classification: Applying machine learning techniques to characterize abstraction in neural representations

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Jonas eKaplan

2015-03-01

Full Text Available Here we highlight an emerging trend in the use of machine learning classifiers to test for abstraction across patterns of neural activity. When a classifier algorithm is trained on data from one cognitive context, and tested on data from another, conclusions can be drawn about the role of a given brain region in representing information that abstracts across those cognitive contexts. We call this kind of analysis Multivariate Cross-Classification (MVCC, and review several domains where it has recently made an impact. MVCC has been important in establishing correspondences among neural patterns across cognitive domains, including motor-perception matching and cross-sensory matching. It has been used to test for similarity between neural patterns evoked by perception and those generated from memory. Other work has used MVCC to investigate the similarity of representations for semantic categories across different kinds of stimulus presentation, and in the presence of different cognitive demands. We use these examples to demonstrate the power of MVCC as a tool for investigating neural abstraction and discuss some important methodological issues related to its application.

A Customizable Text Classifier for Text Mining

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Yun-liang Zhang

2007-12-01

Full Text Available Text mining deals with complex and unstructured texts. Usually a particular collection of texts that is specified to one or more domains is necessary. We have developed a customizable text classifier for users to mine the collection automatically. It derives from the sentence category of the HNC theory and corresponding techniques. It can start with a few texts, and it can adjust automatically or be adjusted by user. The user can also control the number of domains chosen and decide the standard with which to choose the texts based on demand and abundance of materials. The performance of the classifier varies with the user's choice.

Temporal dynamics of categorization: Forgetting as the basis of abstraction and generalization

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Haley eVlach

2014-09-01

Full Text Available Historically, models of categorization have focused on how learners track frequencies and co-occurrence information to abstract relevant category features for generalization. The current study takes a different approach by examining how the temporal dynamics of categorization affect abstraction and generalization. In the learning phase of the experiment, all relevant category features were presented an equal number of times across category exemplars. However, the relevant features were presented on one of two learning schedules: massed or interleaved. At a series of immediate and delayed tests, learners were asked to generalize to novel exemplars that contained massed features, interleaved features, or all novel features. The results of this experiment revealed that, at an immediate test, learners more readily generalized based upon features presented on a massed schedule. Conversely, at a delayed test, learners more readily generalized based upon features presented on an interleaved schedule, until information was no longer readily retrievable from memory. These findings suggest that forgetting and retrieval processes engendered by the temporal dynamics of learning are used as a basis of abstraction, implicating forgetting as a central mechanism of generalization.

05421 Abstracts Collection - Data Always and Everywhere

DEFF Research Database (Denmark)

Alonso, G.; Jensen, Christian Søndergaard; Mitschang, B.

2006-01-01

From 16.10.05 to 21.10.05, the Dagstuhl Seminar 05421, Data Always and Everywhere - Management of Mobile, Ubiquitous, Pervasive, and Sensor Data, was held in the International Conference and Research Center, Schloss Dagstuhl. During the seminar, all participants were given the opportunity...... to present their current research, and ongoing activities and open problems were discussed. This document is a collection of the abstracts of the presentations given during the seminar. Some abstracts offer links to extended abstracts, full papers, and other supporting documents. A separate companion...... document summarizes the seminar. The authors wish to acknowledge Victor Teixeira de Almeida, who served as collector for the seminar and thus played a key role in collecting materials from the seminar participants...

Parasitological Society of Southern Africa 36th Annual Congress of the Parasitological Society of Southern Africa (PARSA, 18-20 September 2007 : conference abstracts

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The Editorial

2009-05-01

Full Text Available The following are abstracts of papers and posters presented at the 36th Annual Congress of the Parasitological Society of Southern Africa (PARSA, 18-20 September 2007, Pestana Kruger Lodge, Malelane, South Africa

Abstract algebra an inquiry based approach

CERN Document Server

Hodge, Jonathan K; Sundstrom, Ted

2013-01-01

""This book arose from the authors' approach to teaching abstract algebra. They place an emphasis on active learning and on developing students' intuition through their investigation of examples. … The text is organized in such a way that it is possible to begin with either rings or groups.""-Florentina Chirtes, Zentralblatt MATH 1295

Analogical scaffolding and the learning of abstract ideas in physics: Empirical studies

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Noah S. Podolefsky

2007-09-01

Full Text Available Previously, we proposed a model of student reasoning which combines the roles of representation, analogy, and layering of meaning—analogical scaffolding [Podolefsky and Finkelstein, Phys. Rev. ST Phys. Educ. Res. 3, 010109 (2007]. The present empirical studies build on this model to examine its utility and demonstrate the vital intertwining of representation, analogy, and conceptual learning in physics. In two studies of student reasoning using analogy, we show that representations couple to students’ existing prior knowledge and also lead to the dynamic formation of new knowledge. Students presented with abstract, concrete, or blended (both abstract and concrete representations produced markedly different response patterns. In the first study, using analogies to scaffold understanding of electromagnetic (EM waves, students in the blend group were more likely to reason productively about EM waves than students in the abstract group by as much as a factor of 3 (73% vs 24% correct, p=0.002. In the second study, examining representation use within one domain (sound waves, the blend group was more likely to reason productively about sound waves than the abstract group by as much as a factor of 2 (48% vs 23% correct, p=0.002. Using the analogical scaffolding model we examine when and why students succeed and fail to use analogies and interpret representations appropriately.

Analogical scaffolding and the learning of abstract ideas in physics: Empirical studies

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Noah D. Finkelstein

2007-09-01

Full Text Available Previously, we proposed a model of student reasoning which combines the roles of representation, analogy, and layering of meaning—analogical scaffolding [Podolefsky and Finkelstein, Phys. Rev. ST Phys. Educ. Res. 3, 010109 (2007]. The present empirical studies build on this model to examine its utility and demonstrate the vital intertwining of representation, analogy, and conceptual learning in physics. In two studies of student reasoning using analogy, we show that representations couple to students’ existing prior knowledge and also lead to the dynamic formation of new knowledge. Students presented with abstract, concrete, or blended (both abstract and concrete representations produced markedly different response patterns. In the first study, using analogies to scaffold understanding of electromagnetic (EM waves, students in the blend group were more likely to reason productively about EM waves than students in the abstract group by as much as a factor of 3 (73% vs 24% correct, p=0.002 . In the second study, examining representation use within one domain (sound waves, the blend group was more likely to reason productively about sound waves than the abstract group by as much as a factor of 2 (48% vs 23% correct, p=0.002 . Using the analogical scaffolding model we examine when and why students succeed and fail to use analogies and interpret representations appropriately.

The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions.

Science.gov (United States)

Islamaj Dogan, Rezarta; Kim, Sun; Chatr-Aryamontri, Andrew; Chang, Christie S; Oughtred, Rose; Rust, Jennifer; Wilbur, W John; Comeau, Donald C; Dolinski, Kara; Tyers, Mike

2017-01-01

A great deal of information on the molecular genetics and biochemistry of model organisms has been reported in the scientific literature. However, this data is typically described in free text form and is not readily amenable to computational analyses. To this end, the BioGRID database systematically curates the biomedical literature for genetic and protein interaction data. This data is provided in a standardized computationally tractable format and includes structured annotation of experimental evidence. BioGRID curation necessarily involves substantial human effort by expert curators who must read each publication to extract the relevant information. Computational text-mining methods offer the potential to augment and accelerate manual curation. To facilitate the development of practical text-mining strategies, a new challenge was organized in BioCreative V for the BioC task, the collaborative Biocurator Assistant Task. This was a non-competitive, cooperative task in which the participants worked together to build BioC-compatible modules into an integrated pipeline to assist BioGRID curators. As an integral part of this task, a test collection of full text articles was developed that contained both biological entity annotations (gene/protein and organism/species) and molecular interaction annotations (protein-protein and genetic interactions (PPIs and GIs)). This collection, which we call the BioC-BioGRID corpus, was annotated by four BioGRID curators over three rounds of annotation and contains 120 full text articles curated in a dataset representing two major model organisms, namely budding yeast and human. The BioC-BioGRID corpus contains annotations for 6409 mentions of genes and their Entrez Gene IDs, 186 mentions of organism names and their NCBI Taxonomy IDs, 1867 mentions of PPIs and 701 annotations of PPI experimental evidence statements, 856 mentions of GIs and 399 annotations of GI evidence statements. The purpose, characteristics and possible future

The Effect of Different Modes of English Captioning on EFL learners’ General Listening Comprehension: Full text Vs. Keyword Captions

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Sorayya Behroozizad

2015-08-01

Full Text Available This study investigated the effect of different modes of English captioning on EFL learners’ general listening comprehension. To this end, forty five intermediate-level learners were selected based on their scores on a standardized English proficiency test (PET to carry out the study. Then, the selected participants were randomly assigned into two experimental groups (full-captions and keyword-captions and one control group (no-captions. Research instrumentation included a pre-test and a post-test following an experimental design. Participants took a pre-test and a post-test containing 50 multiple-choice questions (25question for pre-test and 25 question for post-test selected from a standard listening test PET, and also 15 treatment sessions. The findings showed significant differences among full-captions, keyword-captions, and no-captions in terms of their effect on learners’ general listening comprehension. This study provided some pedagogical implications for teaching listening through using different modes of captions. Keywords: Caption, full caption, keyword caption, listening comprehension

RevManHAL: towards automatic text generation in systematic reviews.

Science.gov (United States)

Torres Torres, Mercedes; Adams, Clive E

2017-02-09

Systematic reviews are a key part of healthcare evaluation. They involve important painstaking but repetitive work. A major producer of systematic reviews, the Cochrane Collaboration, employs Review Manager (RevMan) programme-a software which assists reviewers and produces XML-structured files. This paper describes an add-on programme (RevManHAL) which helps auto-generate the abstract, results and discussion sections of RevMan-generated reviews in multiple languages. The paper also describes future developments for RevManHAL. RevManHAL was created in Java using NetBeans by a programmer working full time for 2 months. The resulting open-source programme uses editable phrase banks to envelop text/numbers from within the prepared RevMan file in formatted readable text of a chosen language. In this way, considerable parts of the review's 'abstract', 'results' and 'discussion' sections are created and a phrase added to 'acknowledgements'. RevManHAL's output needs to be checked by reviewers, but already, from our experience within the Cochrane Schizophrenia Group (200 maintained reviews, 900 reviewers), RevManHAL has saved much time which is better employed thinking about the meaning of the data rather than restating them. Many more functions will become possible as review writing becomes increasingly automated.

Abstract legal effect of juridical acts in European and Serbian law

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Dudaš Atila

2012-01-01

Full Text Available In this paper the author gives an overview of the development from abstract to causal juridical acts and explains the abstract legal effect of juridical acts in present-day European civil law (in the law of Germany, Austria, Switzerland and France. He concludes that in contemporary law juridical acts cannot have full abstract legal effect, as in archaic legal orders, because modern legal orders do not allow the creation of claims and debts in a way that entirely excludes the possibility to scrutinize whether a juridical act is null and void for the infringement of public order by its aim. In relation to the law of Serbia, the author refers to the difference between juridical acts that create obligations, that is claims and debts, and acts by which the parties merely dispose of the claims and debts already imposed. This division of juridical acts has its origins in the German legal culture, but it is fairly applicable to the Serbian law, as well. The author points out that the requirement of the Law on obligations, that all juridical acts must have a valid cause, applies without exception to juridical acts imposing an obligation (the so-called Verpflichtungsgeschäfte, regardless of whether they are concluded in the form of an abstract of causal act, i.e. whether the purpose of the transaction is determinable from their content. In this context he refers to the standpoint adopted in the doctrine that the cause of juridical acts gains relevance by three means: by the agreement of the parties, objection of the respondent and when the court determines ex officio whether the contract is contrary to public order. The author supports the point of view that in Serbian law juridical acts aimed merely to disposing of claims and debts already imposed (the so-called Verfügungsgeschäfte may have a legal effect, which is independent from their cause. For these reasons, the author is of the opinion that in present-day legal orders, hence in Serbian law too

Naming a Lego world. The role of language in the acquisition of abstract concepts.

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Carmen Granito

Full Text Available While embodied approaches of cognition have proved to be successful in explaining concrete concepts and words, they have more difficulties in accounting for abstract concepts and words, and several proposals have been put forward. This work aims to test the Words As Tools proposal, according to which both abstract and concrete concepts are grounded in perception, action and emotional systems, but linguistic information is more important for abstract than for concrete concept representation, due to the different ways they are acquired: while for the acquisition of the latter linguistic information might play a role, for the acquisition of the former it is instead crucial. We investigated the acquisition of concrete and abstract concepts and words, and verified its impact on conceptual representation. In Experiment 1, participants explored and categorized novel concrete and abstract entities, and were taught a novel label for each category. Later they performed a categorical recognition task and an image-word matching task to verify a whether and how the introduction of language changed the previously formed categories, b whether language had a major weight for abstract than for concrete words representation, and c whether this difference had consequences on bodily responses. The results confirm that, even though both concrete and abstract concepts are grounded, language facilitates the acquisition of the latter and plays a major role in their representation, resulting in faster responses with the mouth, typically associated with language production. Experiment 2 was a rating test aiming to verify whether the findings of Experiment 1 were simply due to heterogeneity, i.e. to the fact that the members of abstract categories were more heterogeneous than those of concrete categories. The results confirmed the effectiveness of our operationalization, showing that abstract concepts are more associated with the mouth and concrete ones with the hand

Elements of abstract algebra

CERN Document Server

Clark, Allan

1984-01-01

This concise, readable, college-level text treats basic abstract algebra in remarkable depth and detail. An antidote to the usual surveys of structure, the book presents group theory, Galois theory, and classical ideal theory in a framework emphasizing proof of important theorems.Chapter I (Set Theory) covers the basics of sets. Chapter II (Group Theory) is a rigorous introduction to groups. It contains all the results needed for Galois theory as well as the Sylow theorems, the Jordan-Holder theorem, and a complete treatment of the simplicity of alternating groups. Chapter III (Field Theory)

Geothermal environmental projects publication list with abstracts 1975-1978

Energy Technology Data Exchange (ETDEWEB)

Ricker, Y.E.; Anspaugh, L.R.

1979-05-15

This report contains 119 abstracts of publication resulting from or closely related to geothermal environmental projects conducted by the Environmental Sciences Division at Lawrence Livermore Laboratory. Publications are listed chronologically from 1975 through 1978. The main entries are numbered sequentially, and include the full citation, an abstract, and selected keywords. This section is followed by an author index, and a keyword index.

Pattern-Directed Processing of Knowledge from Texts.

Science.gov (United States)

Thorndyke, Perry W.

A framework for viewing human text comprehension, memory, and recall is presented that assumes patterns of abstract conceptual relations are used to guide processing. These patterns consist of clusters of knowledge that encode prototypical co-occurrences of situations and events in narrative texts. The patterns are assumed to be a part of a…

Mermin Non-Locality in Abstract Process Theories

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Stefano Gogioso

2015-11-01

Full Text Available The study of non-locality is fundamental to the understanding of quantum mechanics. The past 50 years have seen a number of non-locality proofs, but its fundamental building blocks, and the exact role it plays in quantum protocols, has remained elusive. In this paper, we focus on a particular flavour of non-locality, generalising Mermin's argument on the GHZ state. Using strongly complementary observables, we provide necessary and sufficient conditions for Mermin non-locality in abstract process theories. We show that the existence of more phases than classical points (aka eigenstates is not sufficient, and that the key to Mermin non-locality lies in the presence of certain algebraically non-trivial phases. This allows us to show that fRel, a favourite toy model for categorical quantum mechanics, is Mermin local. We show Mermin non-locality to be the key resource ensuring the device-independent security of the HBB CQ (N,N family of Quantum Secret Sharing protocols. Finally, we challenge the unspoken assumption that the measurements involved in Mermin-type scenarios should be complementary (like the pair X,Y, opening the doors to a much wider class of potential experimental setups than currently employed. In short, we give conditions for Mermin non-locality tests on any number of systems, where each party has an arbitrary number of measurement choices, where each measurement has an arbitrary number of outcomes and further, that works in any abstract process theory.

Abstract ‘why’ thoughts about success lead to greater positive generalization in sport participants

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Jens eVan Lier

2015-11-01

Full Text Available Generalizing from a single failure or success to future performances and their self-concept could have an important impact on sport participants. This study examined the impact of the way sport participants think about success on positive generalization. Sport participants (N=222 completed an online experimental study in which they were induced to think about meanings, causes and implications (i.e., abstract-‘why’-thinking or about more perceptual concrete aspects of their performance (i.e., concrete-‘how’-thinking. We hypothesized that abstract-‘why’-thinking would lead to greater positive generalization and that this effect would be moderated by self-esteem. Our results supported our hypothesis that abstract thinking increased positive generalization, and this effect was more clearly visible in sport participants with higher self-esteem. These results suggest that retrospective thinking about the ‘why’ of a good performance may benefit athletes in the long run because they generalize the outcome to future performances and their self-concept which may boost their motivation and consequently their performance.

Metacognitive interventions in text production and working memory in students with ADHD

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Nelba Maria Teixeira Pisacco

2018-03-01

Full Text Available Abstract This study compared the effects of two metacognitive interventions on writing, working memory (WM, and behavioral symptoms of students with attention-deficit/hyperactivity disorder (ADHD. The disorder was clinically diagnosed by a multidisciplinary team according to DSM-IV criteria. The first approach consisted of a combined intervention in text production and WM while the second focused only on WM. Participants were 47 students from the fifth to ninth grades of two public elementary schools in Porto Alegre (Brazil, randomized to one of the two interventions groups. Writing and WM were assessed before, immediately after, and 3 months after the interventions. The results suggest that both interventions contributed to improving behavior and school performance, whereas only the combined intervention increased the overall quality of narrative text, organization of paragraphs, and denouement.

IPR 2016. Abstracts

Energy Technology Data Exchange (ETDEWEB)

NONE

2016-05-15

The volume on the meeting of pediatric radiology includes abstract on the following issues: chest, cardiovascular system, neuroradiology, CT radiation DRs (diagnostic reference levels) and dose reporting guidelines, genitourinary imaging, gastrointestinal radiology, oncology an nuclear medicine, whole body imaging, fetal/neonates imaging, child abuse, oncology and hybrid imaging, value added imaging, muscoskeletal imaging, dose and radiation safety, imaging children - immobilization and distraction techniques, information - education - QI and healthcare policy, ALARA, the knowledge skills and competences for a technologist/radiographer in pediatric radiology, full exploitation of new technological features in pediatric CT, image quality issues in pediatrics, abdominal imaging, interventional radiology, MR contrast agents, tumor - mass imaging, cardiothoracic imaging, ultrasonography.

IPR 2016. Abstracts

International Nuclear Information System (INIS)

2016-01-01

The volume on the meeting of pediatric radiology includes abstract on the following issues: chest, cardiovascular system, neuroradiology, CT radiation DRs (diagnostic reference levels) and dose reporting guidelines, genitourinary imaging, gastrointestinal radiology, oncology an nuclear medicine, whole body imaging, fetal/neonates imaging, child abuse, oncology and hybrid imaging, value added imaging, muscoskeletal imaging, dose and radiation safety, imaging children - immobilization and distraction techniques, information - education - QI and healthcare policy, ALARA, the knowledge skills and competences for a technologist/radiographer in pediatric radiology, full exploitation of new technological features in pediatric CT, image quality issues in pediatrics, abdominal imaging, interventional radiology, MR contrast agents, tumor - mass imaging, cardiothoracic imaging, ultrasonography.

RHETORICAL PATTERNS, VERB TENSE, AND VOICE IN CROSS DISCIPLINARY RESEARCH ARTICLE ABSTRACT

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Sharifah Hanidar

2016-05-01

Full Text Available This article investigates research article abstracts in terms of their rhetorical patterns and the use of verb tenses and voice. A total of 40 abstracts were selected from four international journals in the fields of Biology, Mechanical Engineering, Linguistics, and Medicine. A four move model was adopted from Hardjanto (1997 to analyze the structure of the abstracts. The results show that all the abstracts have Move 1, creating a research space; 70% have Move 2, describing research procedure; 85% have Move 3, summarizing principal results; and 85% have Move 4, evaluating results. All the abstracts in medicine have Moves 1, 2, 3 and 4, whereas the most common pattern in Biology is Moves 1, 3 and 4, in Mechanical Engineering Moves 1, 2 and 3, and in Linguistics Moves 1, 2 and 4. This seems to suggest that there is a disciplinary variation in the structuring of RA abstracts in the four disciplines under investigation. With regard to the use of verb tense and voice in each move, the present tense and past tense in the active voice and the past tense in the passive voice were the most frequently used tenses. The present tense in the active voice was frequently used in Moves 1 and 4, while the past tense in the active voice was commonly used in Move 3 and the past tense in the passive voice was frequently found in Move 2. Furthermore, it was found that the present tense in the active voice was frequently used in Biology, Mechanical Engineering and Linguistics, whereas the past tense in the active voice occurred more frequently in Medicine, and the past tense in the passive voice was more frequently found in Mechanical Engineering than in other disciplines.

A Text-Mining Framework for Supporting Systematic Reviews.

Science.gov (United States)

Li, Dingcheng; Wang, Zhen; Wang, Liwei; Sohn, Sunghwan; Shen, Feichen; Murad, Mohammad Hassan; Liu, Hongfang

2016-11-01

Systematic reviews (SRs) involve the identification, appraisal, and synthesis of all relevant studies for focused questions in a structured reproducible manner. High-quality SRs follow strict procedures and require significant resources and time. We investigated advanced text-mining approaches to reduce the burden associated with abstract screening in SRs and provide high-level information summary. A text-mining SR supporting framework consisting of three self-defined semantics-based ranking metrics was proposed, including keyword relevance, indexed-term relevance and topic relevance. Keyword relevance is based on the user-defined keyword list used in the search strategy. Indexed-term relevance is derived from indexed vocabulary developed by domain experts used for indexing journal articles and books. Topic relevance is defined as the semantic similarity among retrieved abstracts in terms of topics generated by latent Dirichlet allocation, a Bayesian-based model for discovering topics. We tested the proposed framework using three published SRs addressing a variety of topics (Mass Media Interventions, Rectal Cancer and Influenza Vaccine). The results showed that when 91.8%, 85.7%, and 49.3% of the abstract screening labor was saved, the recalls were as high as 100% for the three cases; respectively. Relevant studies identified manually showed strong topic similarity through topic analysis, which supported the inclusion of topic analysis as relevance metric. It was demonstrated that advanced text mining approaches can significantly reduce the abstract screening labor of SRs and provide an informative summary of relevant studies.

Text messaging, pragmatic competence, and affective facilitation in the EFL context: A pilot study

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Madeline Haggan

2010-12-01

Full Text Available Abstract Since text messaging is a widely popular method of communication among young people, the paper tries to investigate whether it might have some practical application in the EFL classroom. Kuwaiti EFL students asked to render a mixture of text messages written by their peers and native English speakers into Standard English produced a large number and variety of basic language errors. However, native English-speaking judges were unsuccessful in discriminating between the native and non-native English messages. In addition, the EFL text messages showed that the students were effectively able to achieve their pragmatic aims. Text messaging may therefore have some pedagogical use in terms of motivating the learner. This idea is supported by referring to studies in the literature on text messaging which suggest that the medium may not be as linguistically damaging as is commonly thought.

Improved algorithms for approximate string matching (extended abstract

Directory of Open Access Journals (Sweden)

Papamichail Georgios

2009-01-01

Full Text Available Abstract Background The problem of approximate string matching is important in many different areas such as computational biology, text processing and pattern recognition. A great effort has been made to design efficient algorithms addressing several variants of the problem, including comparison of two strings, approximate pattern identification in a string or calculation of the longest common subsequence that two strings share. Results We designed an output sensitive algorithm solving the edit distance problem between two strings of lengths n and m respectively in time O((s - |n - m|·min(m, n, s + m + n and linear space, where s is the edit distance between the two strings. This worst-case time bound sets the quadratic factor of the algorithm independent of the longest string length and improves existing theoretical bounds for this problem. The implementation of our algorithm also excels in practice, especially in cases where the two strings compared differ significantly in length. Conclusion We have provided the design, analysis and implementation of a new algorithm for calculating the edit distance of two strings with both theoretical and practical implications. Source code of our algorithm is available online.

Language-Agnostic Relation Extraction from Abstracts in Wikis

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Nicolas Heist

2018-03-01

Full Text Available Large-scale knowledge graphs, such as DBpedia, Wikidata, or YAGO, can be enhanced by relation extraction from text, using the data in the knowledge graph as training data, i.e., using distant supervision. While most existing approaches use language-specific methods (usually for English, we present a language-agnostic approach that exploits background knowledge from the graph instead of language-specific techniques and builds machine learning models only from language-independent features. We demonstrate the extraction of relations from Wikipedia abstracts, using the twelve largest language editions of Wikipedia. From those, we can extract 1.6 M new relations in DBpedia at a level of precision of 95%, using a RandomForest classifier trained only on language-independent features. We furthermore investigate the similarity of models for different languages and show an exemplary geographical breakdown of the information extracted. In a second series of experiments, we show how the approach can be transferred to DBkWik, a knowledge graph extracted from thousands of Wikis. We discuss the challenges and first results of extracting relations from a larger set of Wikis, using a less formalized knowledge graph.

Psychological effects and epistemological education through mathematics "abstraction" and "construction"

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Aurel Pera

2015-10-01

Full Text Available This study is part of a broader research which will be found in future work, Psychology and epistemology of mathematical creation, complementary work of experimental research psychology mathematics, whose investigative approach, promoting the combination type cross section paradigms and quantitative methods and qualitative and comparative method and the analytic-synthetic, based on the following idea: to make learning as efficient, contents and methods must be appropriate to the individual particularities of the pupils, a measure of the balance between converging and diverging dosing tasks as a promising opening to the transition from education proficiency in math performance. At this juncture, mathematical existence as ontological approach against the background of a history of "abstraction" mathematical and theoretical observations on the abstraction, realization and other mathematical thought processes, explanatory approach fulfills the context in which s mathematics constituted an important factor in psychological and methodological perspective, in a context of maximizing the educational effectiveness that depends on the quality of the methods used in teaching, focused on knowledge of the general principles of psycho-didactics not only mathematical and mental organization individual student or knowledge of the factors that make possible psycho-educational learning process.

Are the products of statistical learning abstract or stimulus-specific?

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Athena eVouloumanos

2012-03-01

Full Text Available Learners segment potential lexical units from syllable streams when statistically variable transitional probabilities between adjacent syllables are the only cues to word boundaries. Here we examine the nature of the representations that result from statistical learning by assessing learners’ ability to generalize across acoustically different stimuli. In three experiments, we investigate limitations on the outcome of statistical learning by considering two possibilities: that the products of statistical segmentation processes are abstract and generalizable representations, or, alternatively, that products of statistical learning are stimulus-bound and restricted to perceptually similar instances. In Experiment 1, learners segmented units from statistically predictable streams, and recognized these units when they were acoustically transformed by temporal reversals. In Experiment 2, learners were able to segment units from temporally reversed syllable streams, but were only able to generalize in conditions of mild acoustic transformation. In Experiment 3, learners were able to recognize statistically segmented units after a voice change but were unable to do so when the novel voice was mildly distorted. Together these results suggest that representations that result from statistical learning can be abstracted to some degree, but not in all listening conditions.

Enrichment Effects of Gestures and Pictures on Abstract Words in a Second Language

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Claudia Repetto

2017-12-01

Full Text Available Laboratory research has demonstrated that multisensory enrichment promotes verbal learning in a foreign language (L2. Enrichment can be done in various ways, e.g., by adding a picture that illustrates the L2 word’s meaning or by the learner performing a gesture to the word (enactment. Most studies have tested enrichment on concrete but not on abstract words. Unlike concrete words, the representation of abstract words is deprived of sensory-motor features. This has been addressed as one of the reasons why abstract words are difficult to remember. Here, we ask whether a brief enrichment training by means of pictures and by self-performed gestures also enhances the memorability of abstract words in L2. Further, we explore which of these two enrichment strategies is more effective. Twenty young adults learned 30 novel abstract words in L2 according to three encoding conditions: (1 reading, (2 reading and pairing the novel word to a picture, and (3 reading and enacting the word by means of a gesture. We measured memory performance in free and cued recall tests, as well as in a visual recognition task. Words encoded with gestures were better remembered in the free recall in the native language (L1. When recognizing the novel words, participants made less errors for words encoded with gestures compared to words encoded with pictures. The reaction times in the recognition task did not differ across conditions. The present findings support, even if only partially, the idea that enactment promotes learning of abstract words and that it is superior to enrichment by means of pictures even after short training.

Subsequent publication of oral and maxillofacial surgery meeting abstracts.

Science.gov (United States)

Rodriguez, Joseph L; Laskin, Daniel M

2012-05-01

Previous studies in various medical specialties have shown that fewer than 50% of abstracts presented at meetings are subsequently published. The purpose of the present study was to determine the publication rate of abstracts presented at the annual meetings of the American Association of Oral and Maxillofacial Surgeons. The titles and authors of the abstracts from all oral abstract session presentations and posters by American contributors were collected from the Final Programs of the American Association of Oral and Maxillofacial Surgeons annual meetings for 2006 to 2009. A PubMed search for published articles through December 2010 was then performed using the authors' names, abstract titles, and key words. A total of 311 abstract presentations were done at the 4 annual meetings. Of these, only 85 (24%) were subsequently published. No difference was found between abstracts from oral or poster presentations. Most of the articles were published in the Journal of Oral and Maxillofacial Surgery. Because of deficiencies that can occur in abstracts and the need to disseminate the information they contain, it is important to take the appropriate measures to ensure that full articles are subsequently published. Copyright © 2012 American Association of Oral and Maxillofacial Surgeons. Published by Elsevier Inc. All rights reserved.

ABSTRACT NOUNS IN THE SPEECH OF THE EMGLISHMEN (BASED ON FICTION WORKS AND BRITISH NATIONAL CORPUS

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Natalia Veniaminovna Khokhlova

2015-01-01

Full Text Available The research aimed at studying the use of abstract nouns in the Englishmen’s speech from the standpoint of sociolinguistics. The article introduces a new, sociolinguistic, approach to research of abstract nouns; it is also the first time they are studied in a language corpus. The first stage of the research was based on fiction literary works: abstract nouns were extracted of analysis from the statements of the characters belonging to the opposite social classes. Later, these data was compared with the results of the original corpus research based on the British national corpus: sentences with nouns were selected out of the conversational subcorpus of BNC and were further sorted into abstract, concrete and words denoting people. Then, their frequency and vocabulary was studied with regards to speakers’ age, gender and social standing. The results revealed that abstract words are used more often that concrete ones regardless of the speaker’s social characteristics, however, the size and content of vocabulary is different (it is generally more substantial in the speech of women and representatives of higher social classes. The results of this research can be used in elaborating a course of the English language or in teaching general linguistics, sociolinguistics and country studies. 

The Role of Representations in Executive Function: Investigating a Developmental Link Between Flexibility and Abstraction

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Maria eKharitonova

2011-11-01

Full Text Available Young children often perseverate, engaging in previously correct, but no longer appropriate behaviors. One account posits that such perseveration results from the use of stimulus-specific representations of a situation, which are distinct from abstract, generalizable representations that support flexible behavior. Previous findings supported this account, demonstrating that only children who flexibly switch between rules could generalize their behavior to novel stimuli. However, this link between flexibility and generalization might reflect general cognitive abilities, or depend upon similarities across the measures or their temporal order. The current work examined these issues by testing the specificity and generality of this link. In two experiments with three-year-old children, flexibility was measured in terms of switching between rules in a card-sorting task, while abstraction was measured in terms of selecting which stimulus did not belong in an odd-one-out task. The link between flexibility and abstraction was general across (1 abstraction dimensions similar to or different from those in the card-sorting task and (2 abstraction tasks that preceded or followed the switching task. Good performance on abstraction and flexibility measures did not extend to all cognitive tasks, including an IQ measure, and dissociated from children’s ability to gaze at the correct stimulus in the odd-one-out task, suggesting that the link between flexibility and abstraction is specific to such measures, rather than reflecting general abilities that affect all tasks. We interpret these results in terms of the role that developing prefrontal cortical regions play in processes such as working memory, which can support both flexibility and abstraction.

Text localization using standard deviation analysis of structure elements and support vector machines

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Zagoris Konstantinos

2011-01-01

Full Text Available Abstract A text localization technique is required to successfully exploit document images such as technical articles and letters. The proposed method detects and extracts text areas from document images. Initially a connected components analysis technique detects blocks of foreground objects. Then, a descriptor that consists of a set of suitable document structure elements is extracted from the blocks. This is achieved by incorporating an algorithm called Standard Deviation Analysis of Structure Elements (SDASE which maximizes the separability between the blocks. Another feature of the SDASE is that its length adapts according to the requirements of the application. Finally, the descriptor of each block is used as input to a trained support vector machines that classify the block as text or not. The proposed technique is also capable of adjusting to the text structure of the documents. Experimental results on benchmarking databases demonstrate the effectiveness of the proposed method.

Automatic Processing of Metallurgical Abstracts for the Purpose of Information Retrieval. Final Report.

Science.gov (United States)

Melton, Jessica S.

Objectives of this project were to develop and test a method for automatically processing the text of abstracts for a document retrieval system. The test corpus consisted of 768 abstracts from the metallurgical section of Chemical Abstracts (CA). The system, based on a subject indexing rational, had two components: (1) a stored dictionary of words…

Rate and Predictors of the Conversion of Abstracts Presented at the Canadian Cardiovascular Congress Scientific Meetings to Full Peer-Reviewed Publications

DEFF Research Database (Denmark)

Abuzeid, Wael; Fosbøl, Emil Loldrup; Fosbøl, Philip Loldrup

2013-01-01

The rate of conversion of abstracts presented at scientific meetings into peer-reviewed published manuscripts is an important metric for medical societies, because it facilitates translation of scientific knowledge into practice. We determined the rate and predictors of conversion of scientific...... abstracts presented at the Canadian Cardiovascular Congress (CCC) from 2006 to 2010 into peer-reviewed article publications within 2 years of their initial presentation. Using a previously validated computer algorithm, we searched the International Statistical Institute Web of Science to identify peer...

INFECTIOUS DISEASES ARE SLEEPING MONSTERS: Conventional and culturally adapted new metaphors in a corpus of abstracts on immunology

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Laura Hidalgo Downing

2009-04-01

Full Text Available In this paper we examine the role played by metaphor in a corpus of sixty abstracts on immunology from Scientific American. We focus on the distinction between conventional metaphors and culturally adapted new metaphors and discuss the role played by metaphor choice in the communicative purposes of the abstracts and their register features. We argue that one of the main strategies used to attract the reader‘s attention is the combination of highly conventionalized metaphors, which occur more frequently in the corpus, together with what we call “culturally adapted new metaphors”, which display different degrees of creativity and are less frequent in the corpus. Conventional metaphors typically reinforce the world view shared by the scientific community and introduce basic ideas on the subject of immunology. Culturally adapted new metaphors include a cline from slightly new perspectives of conventional models, to highly creative uses of metaphor. Culturally adapted new metaphors appeal primarily to a general readership and not to the scientific community, as they tap human emotions and mythic constructions. These play a crucial role in the abstracts, as they contribute to persuasive and didactic communicative functions in the text.

"What is relevant in a text document?": An interpretable machine learning approach.

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Leila Arras

Full Text Available Text documents can be described by a number of abstract concepts such as semantic category, writing style, or sentiment. Machine learning (ML models have been trained to automatically map documents to these abstract concepts, allowing to annotate very large text collections, more than could be processed by a human in a lifetime. Besides predicting the text's category very accurately, it is also highly desirable to understand how and why the categorization process takes place. In this paper, we demonstrate that such understanding can be achieved by tracing the classification decision back to individual words using layer-wise relevance propagation (LRP, a recently developed technique for explaining predictions of complex non-linear classifiers. We train two word-based ML models, a convolutional neural network (CNN and a bag-of-words SVM classifier, on a topic categorization task and adapt the LRP method to decompose the predictions of these models onto words. Resulting scores indicate how much individual words contribute to the overall classification decision. This enables one to distill relevant information from text documents without an explicit semantic information extraction step. We further use the word-wise relevance scores for generating novel vector-based document representations which capture semantic information. Based on these document vectors, we introduce a measure of model explanatory power and show that, although the SVM and CNN models perform similarly in terms of classification accuracy, the latter exhibits a higher level of explainability which makes it more comprehensible for humans and potentially more useful for other applications.

An EMOF-Compliant Abstract Syntax for Bigraphs

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Timo Kehrer

2016-12-01

Full Text Available Bigraphs are an emerging modeling formalism for structures in ubiquitous computing. Besides an algebraic notation, which can be adopted to provide an algebraic syntax for bigraphs, the bigraphical theory introduces a visual concrete syntax which is intuitive and unambiguous at the same time; the standard visual notation can be customized and thus tailored to domain-specific requirements. However, in contrast to modeling standards based on the Meta-Object Facility (MOF and domain-specific languages typically used in model-driven engineering (MDE, the bigraphical theory lacks a precise definition of an abstract syntax for bigraphical modeling languages. As a consequence, available modeling and analysis tools use proprietary formats for representing bigraphs internally and persistently, which hampers the exchange of models across tool boundaries. Moreover, tools can be hardly integrated with standard MDE technologies in order to build sophisticated tool chains and modeling environments, as required for systematic engineering of large systems or fostering experimental work to evaluate the bigraphical theory in real-world applications. To overcome this situation, we propose an abstract syntax for bigraphs which is compliant to the Essential MOF (EMOF standard defined by the Object Management Group (OMG. We use typed graphs as a formal underpinning of EMOF-based models and present a canonical mapping which maps bigraphs to typed graphs in a natural way. We also discuss application-specific variation points in the graph-based representation of bigraphs. Following standard techniques from software product line engineering, we present a framework to customize the graph-based representation to support a variety of application scenarios.

Text and graphics: manipulating nutrition brochures to maximize recall.

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Clark, K L; AbuSabha, R; von Eye, A; Achterberg, C

1999-08-01

This study examined how altering text and graphics of a nutrition brochure could affect the ability to remember the content of the message. Two theoretical models were used to guide alterations: dual-coding theory and the communications model. Three brochure formats were tested: the original brochure containing abstract text and abstract graphics, a modified brochure with relatively concrete text and abstract graphics, and a relatively concrete text brochure with concrete graphics. Participants (N = 239 women) were divided into four age groups: 20-30, 40-50, 60-70 and over 70 years. Women were randomly assigned into each of the three experimental brochure formats or a control group. Participants completed recalled materials from the assigned brochures (the no treatment control group did not include a brochure) at two different sessions, 30 days apart. Data were content analyzed and results were compared using analysis of covariance to test differences by age and brochure types. Younger women (20-30 and 40-50 years) recalled more information than women over 60 years. More concrete nutrition education print materials enhanced recall of information presented immediately after reading the material; however, this effect was transient and lasted less than 30 days after a one-time reading. The implications of these data for communicating nutrition messages with print materials are discussed.

SparkText: Biomedical Text Mining on Big Data Framework.

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Zhan Ye

Full Text Available Many new biomedical research articles are published every day, accumulating rich information, such as genetic variants, genes, diseases, and treatments. Rapid yet accurate text mining on large-scale scientific literature can discover novel knowledge to better understand human diseases and to improve the quality of disease diagnosis, prevention, and treatment.In this study, we designed and developed an efficient text mining framework called SparkText on a Big Data infrastructure, which is composed of Apache Spark data streaming and machine learning methods, combined with a Cassandra NoSQL database. To demonstrate its performance for classifying cancer types, we extracted information (e.g., breast, prostate, and lung cancers from tens of thousands of articles downloaded from PubMed, and then employed Naïve Bayes, Support Vector Machine (SVM, and Logistic Regression to build prediction models to mine the articles. The accuracy of predicting a cancer type by SVM using the 29,437 full-text articles was 93.81%. While competing text-mining tools took more than 11 hours, SparkText mined the dataset in approximately 6 minutes.This study demonstrates the potential for mining large-scale scientific articles on a Big Data infrastructure, with real-time update from new articles published daily. SparkText can be extended to other areas of biomedical research.

A Review of Abstracting and Indexing Services for Biomedical Journals

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Sarita Bhardwaj

2017-10-01

Full Text Available The days are gone when the researchers used to go to library to look for the articles of their choice. With the introduction of electronic era, searching an article online has become easier. This has been possible due to the availability of various Abstracting and Indexing (A & I services in the world. Of more than 400 online A & I services available, only a few like Google and Thomson Reuters cover all disciplines. Most A & I services cover just one discipline allowing them to cover their area in more depth. There are many databases and indexing services for biomedical journals, most important ones being PubMed/Medline, Scopus, and Web of Science (ISI. This article gives a review of various databases and indexes available for dental journals in the world.

Workshop on Radioanalytical Chemistry for Radioecology and Waste Management: Report, evaluation, abstracts and full papers of presentations

Energy Technology Data Exchange (ETDEWEB)

Hou, X. (Technical Univ. of Denmark, Risoe National Lab. for Sustainable Energy. Radiation Research Div., Roskilde (Denmark))

2010-03-15

A NKS-B workshop on radioanalytical chemistry for radioecology and waste management was held at Risoe, Roskilde, Denmark in 16-20th November 2009. The workshop was organized as 3 days lectures and presentations and two days laboratory practice. 48 peoples participated the workshop, including 32 young participants from Denmark, Finland, Norway, Sweden, Lithuania and Ireland. This report gives a brief description of the workshop and an evaluation of the workshop by statistic analysis of questionnaires feed back from the participants. The book of abstracts and proceedings presented in the workshop is enclosed. (author)

Workshop on Radioanalytical Chemistry for Radioecology and Waste Management: Report, evaluation, abstracts and full papers of presentations

International Nuclear Information System (INIS)

Hou, X.

2010-03-01

A NKS-B workshop on radioanalytical chemistry for radioecology and waste management was held at Risoe, Roskilde, Denmark in 16-20th November 2009. The workshop was organized as 3 days lectures and presentations and two days laboratory practice. 48 peoples participated the workshop, including 32 young participants from Denmark, Finland, Norway, Sweden, Lithuania and Ireland. This report gives a brief description of the workshop and an evaluation of the workshop by statistic analysis of questionnaires feed back from the participants. The book of abstracts and proceedings presented in the workshop is enclosed. (author)

Programme and abstracts

International Nuclear Information System (INIS)

1975-01-01

Abstracts of 25 papers presented at the congress are given. The abstracts cover various topics including radiotherapy, radiopharmaceuticals, radioimmunoassay, health physics, radiation protection and nuclear medicine

6th international conference on biophysics and synchrotron radiation. Program/Abstracts

International Nuclear Information System (INIS)

Pittroff, Connie; Strasser, Susan Barr

1999-01-01

This STI product consists of the Program/Abstracts book that was prepared for the participants in the Sixth International Conference on Biophysics and Synchrotron Radiation that was held August 4-8, 1998, at the Advanced Photon Source, Argonne National Laboratory. This book contains the full conference program and abstracts of the scientific presentations

6th international conference on biophysics and synchrotron radiation. Program/Abstracts

Energy Technology Data Exchange (ETDEWEB)

Pittroff, Connie; Strasser, Susan Barr [lead editors

1999-08-03

This STI product consists of the Program/Abstracts book that was prepared for the participants in the Sixth International Conference on Biophysics and Synchrotron Radiation that was held August 4-8, 1998, at the Advanced Photon Source, Argonne National Laboratory. This book contains the full conference program and abstracts of the scientific presentations.

2018 Congress Podium Abstracts

Science.gov (United States)

2018-02-21

Each abstract has been indexed according to first author. Abstracts appear as they were submitted and have not undergone editing or the Oncology Nursing Forum’s review process. Only abstracts that will be presented appear here. For Congress scheduling information, visit congress.ons.org or check the Congress guide. Data published in abstracts presented at the ONS 43rd Annual Congress are embargoed until the conclusion of the presentation. Coverage and/or distribution of an abstract, poster, or any of its supplemental material to or by the news media, any commercial entity, or individuals, including the authors of said abstract, is strictly prohibited until the embargo is lifted. Promotion of general topics and speakers is encouraged within these guidelines.

Temporal Dynamics of Task Switching and Abstract-Concept Learning in Pigeons

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Thomas Alexander Daniel

2015-09-01

Full Text Available The current study examined whether pigeons could learn to use abstract concepts as the basis for conditionally switching behavior as a function of time. Using a mid-session reversal task, experienced pigeons were trained to switch from matching-to-sample (MTS to non-matching-to-sample (NMTS conditional discriminations within a session. One group had prior training with MTS, while the other had prior training with NMTS. Over training, stimulus set size was progressively doubled from 3 to 6 to 12 stimuli to promote abstract concept development. Prior experience had an effect on the initial learning at each of the set sizes but by the end of training there were no group differences, as both groups showed similar within-session linear matching functions. After acquiring the 12-item set, abstract-concept learning was tested by placing novel stimuli at the beginning and end of a test session. Prior matching and non-matching experience affected transfer behavior. The matching experienced group transferred to novel stimuli in both the matching and non-matching portion of the sessions using a matching rule. The non-matching experienced group transferred to novel stimuli in both portions of the session using a non-matching rule. The representations used as the basis for mid-session reversal of the conditional discrimination behaviors and subsequent transfer behavior appears to have different temporal sources. The implications for the flexibility and organization of complex behaviors are considered.

Impact of Concreteness on Comprehensibility, Interest, and Memory for Text: Implications for Dual Coding Theory and Text Design.

Science.gov (United States)

Sadoski, Mark; And Others

1993-01-01

The comprehensibility, interestingness, familiarity, and memorability of concrete and abstract instructional texts were studied in 4 experiments involving 221 college students. Results indicate that concreteness (ease of imagery) is the variable overwhelmingly most related to comprehensibility and recall. Dual coding theory and schema theory are…

Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature.

Science.gov (United States)

Ravikumar, Komandur Elayavilli; Wagholikar, Kavishwar B; Li, Dingcheng; Kocher, Jean-Pierre; Liu, Hongfang

2015-06-06

Advances in the next generation sequencing technology has accelerated the pace of individualized medicine (IM), which aims to incorporate genetic/genomic information into medicine. One immediate need in interpreting sequencing data is the assembly of information about genetic variants and their corresponding associations with other entities (e.g., diseases or medications). Even with dedicated effort to capture such information in biological databases, much of this information remains 'locked' in the unstructured text of biomedical publications. There is a substantial lag between the publication and the subsequent abstraction of such information into databases. Multiple text mining systems have been developed, but most of them focus on the sentence level association extraction with performance evaluation based on gold standard text annotations specifically prepared for text mining systems. We developed and evaluated a text mining system, MutD, which extracts protein mutation-disease associations from MEDLINE abstracts by incorporating discourse level analysis, using a benchmark data set extracted from curated database records. MutD achieves an F-measure of 64.3% for reconstructing protein mutation disease associations in curated database records. Discourse level analysis component of MutD contributed to a gain of more than 10% in F-measure when compared against the sentence level association extraction. Our error analysis indicates that 23 of the 64 precision errors are true associations that were not captured by database curators and 68 of the 113 recall errors are caused by the absence of associated disease entities in the abstract. After adjusting for the defects in the curated database, the revised F-measure of MutD in association detection reaches 81.5%. Our quantitative analysis reveals that MutD can effectively extract protein mutation disease associations when benchmarking based on curated database records. The analysis also demonstrates that incorporating

2018 Congress Poster Abstracts

Science.gov (United States)

2018-02-21

Each abstract has been indexed according to the first author. Abstracts appear as they were submitted and have not undergone editing or the Oncology Nursing Forum’s review process. Only abstracts that will be presented appear here. Poster numbers are subject to change. For updated poster numbers, visit congress.ons.org or check the Congress guide. Data published in abstracts presented at the ONS 43rd Annual Congress are embargoed until the conclusion of the presentation. Coverage and/or distribution of an abstract, poster, or any of its supplemental material to or by the news media, any commercial entity, or individuals, including the authors of said abstract, is strictly prohibited until the embargo is lifted. Promotion of general topics and speakers is encouraged within these guidelines.

PROFILING THE VOCABULARY OF NEWS TEXTS AS CAPACITY BUILDING FOR LANGUAGE TEACHERS

Directory of Open Access Journals (Sweden)

Gusti Astika

2015-01-01

Full Text Available Abstract: The importance of vocabulary in reading has been discussed extensively in the literature. Researchers claim that vocabulary is essential and has a central role in comprehension.   Development in ICT and easy access to information from the internet necessitate language teachers to have relevant knowledge and skills to utilize pedagogical tools to use authentic online materials for learning purposes.  One of such a tool is the Vocabulary Profiler that can be used to categorize lexical words in a text into different frequency levels: high, low, and academic word list. This paper discusses how to use the Vocabulary Profiler to classify words in a text into the different categories.  The utilization of this tool can significantly alleviate the workload of teachers in selecting vocabulary in  reading text which is conventionally based on teachers’ intuition and perception. The sample text in this paper was selected from VOA website which may not be found in the textbooks currently used at schools. The paper ends with some implication for teaching about vocabulary selection.

E2FM: an encrypted and compressed full-text index for collections of genomic sequences.

Science.gov (United States)

Montecuollo, Ferdinando; Schmid, Giovannni; Tagliaferri, Roberto

2017-09-15

Next Generation Sequencing (NGS) platforms and, more generally, high-throughput technologies are giving rise to an exponential growth in the size of nucleotide sequence databases. Moreover, many emerging applications of nucleotide datasets-as those related to personalized medicine-require the compliance with regulations about the storage and processing of sensitive data. We have designed and carefully engineered E 2 FM -index, a new full-text index in minute space which was optimized for compressing and encrypting nucleotide sequence collections in FASTA format and for performing fast pattern-search queries. E 2 FM -index allows to build self-indexes which occupy till to 1/20 of the storage required by the input FASTA file, thus permitting to save about 95% of storage when indexing collections of highly similar sequences; moreover, it can exactly search the built indexes for patterns in times ranging from few milliseconds to a few hundreds milliseconds, depending on pattern length. Source code is available at https://github.com/montecuollo/E2FM . ferdinando.montecuollo@unicampania.it. Supplementary data are available at Bioinformatics online. © The Author (2017). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Text and ideology: text-oriented discourse analysis

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Maria Eduarda Gonçalves Peixoto

2018-04-01

Full Text Available The article aims to contribute to the understanding of the connection between text and ideology articulated by the text-oriented analysis of discourse (ADTO. Based on the reflections of Fairclough (1989, 2001, 2003 and Fairclough and Chouliaraki (1999, the debate presents the social ontology that ADTO uses to base its conception of social life as an open system and textually mediated; the article then explains the chronological-narrative development of the main critical theories of ideology, by virtue of which ADTO organizes the assumptions that underpin the particular use it makes of the term. Finally, the discussion presents the main aspects of the connection between text and ideology, offering a conceptual framework that can contribute to the domain of the theme according to a critical discourse analysis approach.

Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.

Science.gov (United States)

Tudor, Catalina O; Ross, Karen E; Li, Gang; Vijay-Shanker, K; Wu, Cathy H; Arighi, Cecilia N

2015-01-01

Protein phosphorylation is a reversible post-translational modification where a protein kinase adds a phosphate group to a protein, potentially regulating its function, localization and/or activity. Phosphorylation can affect protein-protein interactions (PPIs), abolishing interaction with previous binding partners or enabling new interactions. Extracting phosphorylation information coupled with PPI information from the scientific literature will facilitate the creation of phosphorylation interaction networks of kinases, substrates and interacting partners, toward knowledge discovery of functional outcomes of protein phosphorylation. Increasingly, PPI databases are interested in capturing the phosphorylation state of interacting partners. We have previously developed the eFIP (Extracting Functional Impact of Phosphorylation) text mining system, which identifies phosphorylated proteins and phosphorylation-dependent PPIs. In this work, we present several enhancements for the eFIP system: (i) text mining for full-length articles from the PubMed Central open-access collection; (ii) the integration of the RLIMS-P 2.0 system for the extraction of phosphorylation events with kinase, substrate and site information; (iii) the extension of the PPI module with new trigger words/phrases describing interactions and (iv) the addition of the iSimp tool for sentence simplification to aid in the matching of syntactic patterns. We enhance the website functionality to: (i) support searches based on protein roles (kinases, substrates, interacting partners) or using keywords; (ii) link protein entities to their corresponding UniProt identifiers if mapped and (iii) support visual exploration of phosphorylation interaction networks using Cytoscape. The evaluation of eFIP on full-length articles achieved 92.4% precision, 76.5% recall and 83.7% F-measure on 100 article sections. To demonstrate eFIP for knowledge extraction and discovery, we constructed phosphorylation-dependent interaction

Conference presentation to publication: a retrospective study evaluating quality of abstracts and journal articles in medical education research

Directory of Open Access Journals (Sweden)

Christopher R. Stephenson

2017-11-01

Full Text Available Abstract Background There is little evidence regarding the comparative quality of abstracts and articles in medical education research. The Medical Education Research Study Quality Instrument (MERSQI, which was developed to evaluate the quality of reporting in medical education, has strong validity evidence for content, internal structure, and relationships to other variables. We used the MERSQI to compare the quality of reporting for conference abstracts, journal abstracts, and published articles. Methods This is a retrospective study of all 46 medical education research abstracts submitted to the Society of General Internal Medicine 2009 Annual Meeting that were subsequently published in a peer-reviewed journal. We compared MERSQI scores of the abstracts with scores for their corresponding published journal abstracts and articles. Comparisons were performed using the signed rank test. Results Overall MERSQI scores increased significantly for published articles compared with conference abstracts (11.33 vs 9.67; P < .001 and journal abstracts (11.33 vs 9.96; P < .001. Regarding MERSQI subscales, published articles had higher MERSQI scores than conference abstracts in the domains of sampling (1.59 vs 1.34; P = .006, data analysis (3.00 vs 2.43; P < .001, and validity of evaluation instrument (1.04 vs 0.28; P < .001. Published articles also had higher MERSQI scores than journal abstracts in the domains of data analysis (3.00 vs 2.70; P = .004 and validity of evaluation instrument (1.04 vs 0.26; P < .001. Conclusions To our knowledge, this is the first study to compare the quality of medical education abstracts and journal articles using the MERSQI. Overall, the quality of articles was greater than that of abstracts. However, there were no significant differences between abstracts and articles for the domains of study design and outcomes, which indicates that these MERSQI elements may be applicable to abstracts. Findings

PolySearch2: a significantly improved text-mining system for discovering associations between human diseases, genes, drugs, metabolites, toxins and more.

Science.gov (United States)

Liu, Yifeng; Liang, Yongjie; Wishart, David

2015-07-01

PolySearch2 (http://polysearch.ca) is an online text-mining system for identifying relationships between biomedical entities such as human diseases, genes, SNPs, proteins, drugs, metabolites, toxins, metabolic pathways, organs, tissues, subcellular organelles, positive health effects, negative health effects, drug actions, Gene Ontology terms, MeSH terms, ICD-10 medical codes, biological taxonomies and chemical taxonomies. PolySearch2 supports a generalized 'Given X, find all associated Ys' query, where X and Y can be selected from the aforementioned biomedical entities. An example query might be: 'Find all diseases associated with Bisphenol A'. To find its answers, PolySearch2 searches for associations against comprehensive collections of free-text collections, including local versions of MEDLINE abstracts, PubMed Central full-text articles, Wikipedia full-text articles and US Patent application abstracts. PolySearch2 also searches 14 widely used, text-rich biological databases such as UniProt, DrugBank and Human Metabolome Database to improve its accuracy and coverage. PolySearch2 maintains an extensive thesaurus of biological terms and exploits the latest search engine technology to rapidly retrieve relevant articles and databases records. PolySearch2 also generates, ranks and annotates associative candidates and present results with relevancy statistics and highlighted key sentences to facilitate user interpretation. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

An inconclusive study comparing the effect of concrete and abstract descriptions of belief-inconsistent information.

Directory of Open Access Journals (Sweden)

Katherine A Collins

Full Text Available Linguistic bias is the differential use of linguistic abstraction (as defined by the Linguistic Category Model to describe the same behaviour for members of different groups. Essentially, it is the tendency to use concrete language for belief-inconsistent behaviours and abstract language for belief-consistent behaviours. Having found that linguistic bias is produced without intention or awareness in many contexts, researchers argue that linguistic bias reflects, reinforces, and transmits pre-existing beliefs, thus playing a role in belief maintenance. Based on the Linguistic Category Model, this assumes that concrete descriptions reduce the impact of belief-inconsistent behaviours while abstract descriptions maximize the impact of belief-consistent behaviours. However, a key study by Geschke, Sassenberg, Ruhrmann, and Sommer [2007] found that concrete descriptions of belief-inconsistent behaviours actually had a greater impact than abstract descriptions, a finding that does not fit easily within the linguistic bias paradigm. Abstract descriptions (e.g. the elderly woman is athletic are, by definition, more open to interpretation than concrete descriptions (e.g. the elderly woman works out regularly. It is thus possible that abstract descriptions are (1 perceived as having less evidentiary strength than concrete descriptions, and (2 understood in context (i.e. athletic for an elderly woman. In this study, the design of Geschke et al. [2007] was modified to address this possibility. We expected that the differences in the impact of concrete and abstract descriptions would be reduced or reversed, but instead we found that differences were largely absent. This study did not support the findings of Geschke et al. [2007] or the linguistic bias paradigm. We encourage further attempts to understand the strong effect of concrete descriptions for belief-inconsistent behaviour.

An analysis of the abstracts presented at the annual meetings of the Society for Neuroscience from 2001 to 2006.

Directory of Open Access Journals (Sweden)

John M Lin

2008-04-01

Full Text Available Annual meeting abstracts published by scientific societies often contain rich arrays of information that can be computationally mined and distilled to elucidate the state and dynamics of the subject field. We extracted and processed abstract data from the Society for Neuroscience (SFN annual meeting abstracts during the period 2001-2006 in order to gain an objective view of contemporary neuroscience. An important first step in the process was the application of data cleaning and disambiguation methods to construct a unified database, since the data were too noisy to be of full utility in the raw form initially available. Using natural language processing, text mining, and other data analysis techniques, we then examined the demographics and structure of the scientific collaboration network, the dynamics of the field over time, major research trends, and the structure of the sources of research funding. Some interesting findings include a high geographical concentration of neuroscience research in the north eastern United States, a surprisingly large transient population (66% of the authors appear in only one out of the six studied years, the central role played by the study of neurodegenerative disorders in the neuroscience community, and an apparent growth of behavioral/systems neuroscience with a corresponding shrinkage of cellular/molecular neuroscience over the six year period. The results from this work will prove useful for scientists, policy makers, and funding agencies seeking to gain a complete and unbiased picture of the community structure and body of knowledge encapsulated by a specific scientific domain.

Program and abstracts

Energy Technology Data Exchange (ETDEWEB)

1975-01-01

Abstracts of the papers given at the conference are presented. The abstracts are arranged under sessions entitled:Theoretical Physics; Nuclear Physics; Solid State Physics; Spectroscopy; Physics Education; SANCGASS; Astronomy; Plasma Physics; Physics in Industry; Applied and General Physics.

Program and abstracts

International Nuclear Information System (INIS)

1975-01-01

Abstracts of the papers given at the conference are presented. The abstracts are arranged under sessions entitled:Theoretical Physics; Nuclear Physics; Solid State Physics; Spectroscopy; Physics Education; SANCGASS; Astronomy; Plasma Physics; Physics in Industry; Applied and General Physics

GENRE ANALYSIS OF THE ENGLISH FINAL PROJECT ABSTRACTS WRITTEN BY THE STUDENTS OF ENGLISH EDUCATION DEPARTMENT OF IKIP PGRI SEMARANG

Directory of Open Access Journals (Sweden)

Wiyaka Wiyaka

2010-12-01

Full Text Available This study is specifically focused on the student final project abstract based on genre analysis which covers the study of the generic structure and the linguistic features. The statements of the study are: (1. How do the students of English Education Department of IKIP PGRI Semarang realize the generic structure in their final project abstracts (2. How do they realize the linguistic features in their final project abstracts, and (3. What is the contribution of the result of the study to the English Education Program of IKIP PGRI Semarang. The main purpose of this study is to find out the generic structure and linguistic features of the final project abstracts and analyze the contribution of this study to the English Department. This study applies the descriptive qualitative method. The object of this study is the final project abstracts written by English Education Department students of ‘IKIP PGRI Semarang’. The total of 10 final projects formed the data of this study. The data of the study were analyzed using the genre analysis approach. The first step of data analysis was identifying the Moves which was done by using Linguistic evidence and understanding the texts. The finding shows that only some of the final project abstracts made by the students of IKIP PGRI applied the five Moves. It is found that two Moves are applied in all abstracts, they are Purpose and Method Moves (100%. Situating the research is used in five abstracts (50%. Meanwhile the third move that is the Result Move used in eight abstracts (80%. The Conclusion Move found in five abstracts (50%. The result of the analysis showed that two personal pronouns were found in the final project abstracts. Personal pronouns such as ‘the writer’ and ‘the researcher’ were found in all of the abstracts. Personal pronoun ‘she’ was found in one abstract. Finally, there are only five expressions of hedges that are used in the final project abstracts, they

Providing Memory Management Abstraction for Self-Reconfigurable Video Processing Platforms

Directory of Open Access Journals (Sweden)

Kurt Franz Ackermann

2009-01-01

Full Text Available This paper presents a concept for an SDRAM controller targeting video processing platforms with dynamically reconfigurable processing units (RPUs. A priority-arbitration algorithm provides the required QoS and supports high bit-rate data streaming of multiple clients. Conforming to common video data structures the controller organizes the memory in partitions, frames, lines, and pixels. The raised level of abstraction drastically reduces the complexity of clients' addressing logic. Its uniform interface structure facilitates instantiations in systems with various clients. In addition to SDRAM controllers for regular applications, special demands of reconfigurable platforms have to be satisfied. The aim of this work is to minimize the number of required bus macros leading to relaxed place and route constraints and reducing the number of critical design paths. A suitable interface protocol is presented, and fundamental implementation issues are outlined.

Textual and language flaws: problems for Spanish doctors in producing abstracts in English

Directory of Open Access Journals (Sweden)

Lourdes Divasson Cilveti

2006-04-01

Full Text Available Scientific journals are the primary source of information for researchers. The number of articles currently indexed in databases is so large that it has become almost impossible to read every relevant article in a particular field. Thus, research paper abstracts (RPAs have acquired increasing importance. Several studies have shown that they are the skipping point, particularly among non-native English speakers. To our knowledge, little research has been carried out on RPA writing by Spanish doctors. It is thus the objective of this article to analyse the way abstracts are structured and linguistically realized by these professionals. We selected 30 RPAs written in English by Spanish speaking doctors from three leading Spanish journals on internal medicine. We recorded their textual level flaws by measuring the degree of informativeness with regard to three main variables: move patterning, ordering and structuring, and their language use flaws under two broad categories: ortho-typographic and grammatical. Length, use of hedges and keywords were also identified. 86.6% of the abstracts were informative, 13.3% uninformative while none of them could be classified as highly informative. With regard to the authors' use of language, over 70% presented some kind of flaws: 21.55% of these mistakes were ortho-typographic while 78.44% were grammatical. Our results support the need of designing specific units geared on the one hand towards explicit teaching of structured abstracts and on the other, towards the difficulties found by doctors because they lack language competence. They would also benefit from clearer guidelines from journal editors.

Program and abstracts

International Nuclear Information System (INIS)

1976-01-01

Abstracts of the papers given at the conference are presented. The abstracts are arranged under sessions entitled: Theoretical Physics; Nuclear Physics; Solid State Physics; Spectroscopy; Plasma Physics; Solar-Terrestrial Physics; Astrophysics and Astronomy; Radioastronomy; General Physics; Applied Physics; Industrial Physics

Introduction to abstract algebra

CERN Document Server

Nicholson, W Keith

2012-01-01

Praise for the Third Edition ". . . an expository masterpiece of the highest didactic value that has gained additional attractivity through the various improvements . . ."-Zentralblatt MATH The Fourth Edition of Introduction to Abstract Algebra continues to provide an accessible approach to the basic structures of abstract algebra: groups, rings, and fields. The book's unique presentation helps readers advance to abstract theory by presenting concrete examples of induction, number theory, integers modulo n, and permutations before the abstract structures are defined. Readers can immediately be

DOCUMENT REPRESENTATION FOR CLUSTERING OF SCIENTIFIC ABSTRACTS

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S. V. Popova

2014-01-01

Full Text Available The key issue of the present paper is clustering of narrow-domain short texts, such as scientific abstracts. The work is based on the observations made when improving the performance of key phrase extraction algorithm. An extended stop-words list was used that was built automatically for the purposes of key phrase extraction and gave the possibility for a considerable quality enhancement of the phrases extracted from scientific publications. A description of the stop- words list creation procedure is given. The main objective is to investigate the possibilities to increase the performance and/or speed of clustering by the above-mentioned list of stop-words as well as information about lexeme parts of speech. In the latter case a vocabulary is applied for the document representation, which contains not all the words that occurred in the collection, but only nouns and adjectives or their sequences encountered in the documents. Two base clustering algorithms are applied: k-means and hierarchical clustering (average agglomerative method. The results show that the use of an extended stop-words list and adjective-noun document representation makes it possible to improve the performance and speed of k-means clustering. In a similar case for average agglomerative method a decline in performance quality may be observed. It is shown that the use of adjective-noun sequences for document representation lowers the clustering quality for both algorithms and can be justified only when a considerable reduction of feature space dimensionality is necessary.

NetiNeti: discovery of scientific names from text using machine learning methods

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Akella Lakshmi

2012-08-01

Full Text Available Abstract Background A scientific name for an organism can be associated with almost all biological data. Name identification is an important step in many text mining tasks aiming to extract useful information from biological, biomedical and biodiversity text sources. A scientific name acts as an important metadata element to link biological information. Results We present NetiNeti (Name Extraction from Textual Information-Name Extraction for Taxonomic Indexing, a machine learning based approach for recognition of scientific names including the discovery of new species names from text that will also handle misspellings, OCR errors and other variations in names. The system generates candidate names using rules for scientific names and applies probabilistic machine learning methods to classify names based on structural features of candidate names and features derived from their contexts. NetiNeti can also disambiguate scientific names from other names using the contextual information. We evaluated NetiNeti on legacy biodiversity texts and biomedical literature (MEDLINE. NetiNeti performs better (precision = 98.9% and recall = 70.5% compared to a popular dictionary based approach (precision = 97.5% and recall = 54.3% on a 600-page biodiversity book that was manually marked by an annotator. On a small set of PubMed Central’s full text articles annotated with scientific names, the precision and recall values are 98.5% and 96.2% respectively. NetiNeti found more than 190,000 unique binomial and trinomial names in more than 1,880,000 PubMed records when used on the full MEDLINE database. NetiNeti also successfully identifies almost all of the new species names mentioned within web pages. Conclusions We present NetiNeti, a machine learning based approach for identification and discovery of scientific names. The system implementing the approach can be accessed at http://namefinding.ubio.org.

Abstract databases in nuclear medicine; New database for articles not indexed in PubMed

International Nuclear Information System (INIS)

Ugrinska, A.; Mustafa, B.

2004-01-01

Full text: Abstract databases available on Internet free of charge were searched for nuclear medicine contents. The only comprehensive database found was PubMed. Analysis of nuclear medicine journals included in PubMed was performed. PubMed contains 25 medical journals that contain the phrase 'nuclear medicine' in different languages in their title. Searching the Internet with the search engine 'Google' we have found four more peer-reviewed journals with the phrase 'nuclear medicine' in their title. In addition, we are fully aware that many articles related to nuclear medicine are published in national medical journals devoted to general medicine. For example in year 2000 colleagues from Institute of Pathophysiology and Nuclear Medicine, Skopje, Macedonia have published 10 articles out of which none could be found on PubMed. This suggested that a big amount of research work is not accessible for the people professionally involved in nuclear medicine. Therefore, we have created a database framework for abstracts that couldn't be found in PubMed. The database is organized in user-friendly manner. There are two main sections: 'post an abstract' and 'search for abstracts'. Authors of the articles are expected to submit their work in the section 'post an abstract'. During the submission process authors should fill the separate boxes with the Title in English, Title in original language, Country of origin, Journal name, Volume, Issue and Pages. Authors should choose up to five keywords from a drop-down menu. Authors are encouraged if the abstract is not published in English to translate it. The section 'search for abstract' is searchable according to Author, Keywords, and words and phrases incorporated in the English title. The abstract database currently resides on an MS Access back-end, with a front-end in ASP (Active Server Pages). In the future, we plan to migrate the database on a MS SQL Server, which should provide a faster and more reliable framework for hosting a

Extended abstract: ergodic magnetic limiter experiments on TEXT with a 7/3 resonance

International Nuclear Information System (INIS)

deGrassie, J.S.; Ohyabu, N.; Brooks, N.H.

1984-05-01

The ergodic magnetic limiter coils on TEXT have been reconfigured to produce the primary helical perturbation resonance at m = 7 / n = 3. The experiments continue to demonstrate that the weak resonant perturbations modify the edge conditions in keeping with model predictions. We observe a reduction in the intrinsic impurity levels accompanying the helical current pulse, presumably the result of a reduction in the electron temperature in the edge. Heat follows the perturbed field lines to the limiter, generating heat load patterns which reflect the geometry of a magnetic island - limiter intersection. A strong spatial modulation of the electron density in the scrape-off-layer also reflects the helical mode structure

An abstract approach to some spectral problems of direct sum differential operators

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Maksim S. Sokolov

2003-07-01

Full Text Available In this paper, we study the common spectral properties of abstract self-adjoint direct sum operators, considered in a direct sum Hilbert space. Applications of such operators arise in the modelling of processes of multi-particle quantum mechanics, quantum field theory and, specifically, in multi-interval boundary problems of differential equations. We show that a direct sum operator does not depend in a straightforward manner on the separate operators involved. That is, on having a set of self-adjoint operators giving a direct sum operator, we show how the spectral representation for this operator depends on the spectral representations for the individual operators (the coordinate operators involved in forming this sum operator. In particular it is shown that this problem is not immediately solved by taking a direct sum of the spectral properties of the coordinate operators. Primarily, these results are to be applied to operators generated by a multi-interval quasi-differential system studied, in the earlier works of Ashurov, Everitt, Gesztezy, Kirsch, Markus and Zettl. The abstract approach in this paper indicates the need for further development of spectral theory for direct sum differential operators.

Proofs and fundamentals a first course in abstract mathematics

CERN Document Server

Bloch, Ethan D

2003-01-01

In an effort to make advanced mathematics accessible to a wide variety of students, and to give even the most mathematically inclined students a solid basis upon which to build their continuing study of mathematics, there has been a tendency in recent years to introduce students to the for­ mulation and writing of rigorous mathematical proofs, and to teach topics such as sets, functions, relations and countability, in a "transition" course, rather than in traditional courses such as linear algebra. A transition course functions as a bridge between computational courses such as Calculus, and more theoretical courses such as linear algebra and abstract algebra. This text contains core topics that I believe any transition course should cover, as well as some optional material intended to give the instructor some flexibility in designing a course. The presentation is straightforward and focuses on the essentials, without being too elementary, too exces­ sively pedagogical, and too full to distractions. Some of ...

The Effect of Text Chat Assisted with Word Processors on Saudi English Major Students' Writing Accuracy and Productivity of Authentic Texts

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Ahmad Mosa Batianeh

2014-10-01

Full Text Available Abstractــ-This study explored the effects of using online chat and word processors on students' writing skills that include; organizing a text, spelling, punctuation, grammar, phrasal verbs, idioms, idiomatic expressions, pragmatics, creativity, vocabulary growth, content, relational words, conjunctions, authenticity, figures of speech, imagination, coherence, style, socio-cultural aspects, language use, and the production of authentic text. The study group consisted of students in the Department of Languages and Translation at Taibah University who registered for the Writing Two course in the first semester of the 2012 - 2013 academic year. Fourty subjects were divided into two sections: section one was assigned as an experimental group (supported by Facebook and Skype and section two was assigned as a control group and was asked to write their essays with paper and pencil. Facebook and Skype accounts were created for every student in the experimental group. Data was analyzed from pre-test and post-test results to evaluate the question posed by the study: Does the use of online text chat assisted with word processors help undergraduate students develop their writing skills more than traditional methods of teaching? The results revealed that students who worked with Facebook and Skype showed a significant improvement in their writing skills when compared to the control group. In light of these findings, it is recommended that online discussions via Facebook, Skype, and other social media sites should be utilized when teaching writing and the other language skills.

Abstracts and abstracting a genre and set of skills for the twenty-first century

CERN Document Server

Koltay, Tibor

2010-01-01

Despite their changing role, abstracts remain useful in the digital world. Highly beneficial to information professionals and researchers who work and publish in different fields, this book summarizes the most important and up-to-date theory of abstracting, as well as giving advice and examples for the practice of writing different kinds of abstracts. The book discusses the length, the functions and basic structure of abstracts, outlining a new approach to informative and indicative abstracts. The abstractors' personality, their linguistic and non-linguistic knowledge and skills are also discu

“Abstractive description” of land registration system based on the theory of “public confidence”

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Nasrini Tabatabai Hesari

2014-10-01

Full Text Available the system of land registration is protective formalism that is formed based on the theory of “public confidence”. This theory presumes that what reflected by the land registration offices is based on the legal fact. This theory, which provides legal stability and security in transactions, is manifested in three guiding principles including “mirror principle”, “curtain principle” and “insurance principle”, and offers an “abstractive description” to a land registration system. This character has different effects on diverse legal systems and can be studied for both positive and negative systems.

Approximate Fixed Point Theorems for the Class of Almost S-KKM𝒞 Mappings in Abstract Convex Uniform Spaces

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Tong-Huei Chang

2009-01-01

Full Text Available We use a concept of abstract convexity to define the almost S-KKM𝒞 property, al-S-KKM𝒞(X,Y family, and almost Φ-spaces. We get some new approximate fixed point theorems and fixed point theorems in almost Φ-spaces. Our results extend some results of other authors.

Truthful Monadic Abstractions

DEFF Research Database (Denmark)

Brock-Nannestad, Taus; Schürmann, Carsten

2012-01-01

indefinitely, finding neither a proof nor a disproof of a given subgoal. In this paper we characterize a family of truth-preserving abstractions from intuitionistic first-order logic to the monadic fragment of classical first-order logic. Because they are truthful, these abstractions can be used to disprove...

Abstracts

Institute of Scientific and Technical Information of China (English)

2011-01-01

The Western Theories of War Ethics and Contemporary Controversies Li Xiaodong U Ruijing （4） [ Abstract] In the field of international relations, war ethics is a concept with distinct westem ideological color. Due to factors of history and reality, the in

Application of Text Analytics to Extract and Analyze Material–Application Pairs from a Large Scientific Corpus

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Nikhil Kalathil

2018-01-01

Full Text Available When assessing the importance of materials (or other components to a given set of applications, machine analysis of a very large corpus of scientific abstracts can provide an analyst a base of insights to develop further. The use of text analytics reduces the time required to conduct an evaluation, while allowing analysts to experiment with a multitude of different hypotheses. Because the scope and quantity of metadata analyzed can, and should, be large, any divergence from what a human analyst determines and what the text analysis shows provides a prompt for the human analyst to reassess any preliminary findings. In this work, we have successfully extracted material–application pairs and ranked them on their importance. This method provides a novel way to map scientific advances in a particular material to the application for which it is used. Approximately 438,000 titles and abstracts of scientific papers published from 1992 to 2011 were used to examine 16 materials. This analysis used coclustering text analysis to associate individual materials with specific clean energy applications, evaluate the importance of materials to specific applications, and assess their importance to clean energy overall. Our analysis reproduced the judgments of experts in assigning material importance to applications. The validated methods were then used to map the replacement of one material with another material in a specific application (batteries.

Check Sample Abstracts.

Science.gov (United States)

Alter, David; Grenache, David G; Bosler, David S; Karcher, Raymond E; Nichols, James; Rajadhyaksha, Aparna; Camelo-Piragua, Sandra; Rauch, Carol; Huddleston, Brent J; Frank, Elizabeth L; Sluss, Patrick M; Lewandrowski, Kent; Eichhorn, John H; Hall, Janet E; Rahman, Saud S; McPherson, Richard A; Kiechle, Frederick L; Hammett-Stabler, Catherine; Pierce, Kristin A; Kloehn, Erica A; Thomas, Patricia A; Walts, Ann E; Madan, Rashna; Schlesinger, Kathie; Nawgiri, Ranjana; Bhutani, Manoop; Kanber, Yonca; Abati, Andrea; Atkins, Kristen A; Farrar, Robert; Gopez, Evelyn Valencerina; Jhala, Darshana; Griffin, Sonya; Jhala, Khushboo; Jhala, Nirag; Bentz, Joel S; Emerson, Lyska; Chadwick, Barbara E; Barroeta, Julieta E; Baloch, Zubair W; Collins, Brian T; Middleton, Owen L; Davis, Gregory G; Haden-Pinneri, Kathryn; Chu, Albert Y; Keylock, Joren B; Ramoso, Robert; Thoene, Cynthia A; Stewart, Donna; Pierce, Arand; Barry, Michelle; Aljinovic, Nika; Gardner, David L; Barry, Michelle; Shields, Lisa B E; Arnold, Jack; Stewart, Donna; Martin, Erica L; Rakow, Rex J; Paddock, Christopher; Zaki, Sherif R; Prahlow, Joseph A; Stewart, Donna; Shields, Lisa B E; Rolf, Cristin M; Falzon, Andrew L; Hudacki, Rachel; Mazzella, Fermina M; Bethel, Melissa; Zarrin-Khameh, Neda; Gresik, M Vicky; Gill, Ryan; Karlon, William; Etzell, Joan; Deftos, Michael; Karlon, William J; Etzell, Joan E; Wang, Endi; Lu, Chuanyi M; Manion, Elizabeth; Rosenthal, Nancy; Wang, Endi; Lu, Chuanyi M; Tang, Patrick; Petric, Martin; Schade, Andrew E; Hall, Geraldine S; Oethinger, Margret; Hall, Geraldine; Picton, Avis R; Hoang, Linda; Imperial, Miguel Ranoa; Kibsey, Pamela; Waites, Ken; Duffy, Lynn; Hall, Geraldine S; Salangsang, Jo-Anne M; Bravo, Lulette Tricia C; Oethinger, Margaret D; Veras, Emanuela; Silva, Elvia; Vicens, Jimena; Silva, Elvio; Keylock, Joren; Hempel, James; Rushing, Elizabeth; Posligua, Lorena E; Deavers, Michael T; Nash, Jason W; Basturk, Olca; Perle, Mary Ann; Greco, Alba; Lee, Peng; Maru, Dipen; Weydert, Jamie Allen; Stevens, Todd M; Brownlee, Noel A; Kemper, April E; Williams, H James; Oliverio, Brock J; Al-Agha, Osama M; Eskue, Kyle L; Newlands, Shawn D; Eltorky, Mahmoud A; Puri, Puja K; Royer, Michael C; Rush, Walter L; Tavora, Fabio; Galvin, Jeffrey R; Franks, Teri J; Carter, James Elliot; Kahn, Andrea Graciela; Lozada Muñoz, Luis R; Houghton, Dan; Land, Kevin J; Nester, Theresa; Gildea, Jacob; Lefkowitz, Jerry; Lacount, Rachel A; Thompson, Hannis W; Refaai, Majed A; Quillen, Karen; Lopez, Ana Ortega; Goldfinger, Dennis; Muram, Talia; Thompson, Hannis

2009-02-01

The following abstracts are compiled from Check Sample exercises published in 2008. These peer-reviewed case studies assist laboratory professionals with continuing medical education and are developed in the areas of clinical chemistry, cytopathology, forensic pathology, hematology, microbiology, surgical pathology, and transfusion medicine. Abstracts for all exercises published in the program will appear annually in AJCP.

Abstract Datatypes in PVS

Science.gov (United States)

Owre, Sam; Shankar, Natarajan

1997-01-01

PVS (Prototype Verification System) is a general-purpose environment for developing specifications and proofs. This document deals primarily with the abstract datatype mechanism in PVS which generates theories containing axioms and definitions for a class of recursive datatypes. The concepts underlying the abstract datatype mechanism are illustrated using ordered binary trees as an example. Binary trees are described by a PVS abstract datatype that is parametric in its value type. The type of ordered binary trees is then presented as a subtype of binary trees where the ordering relation is also taken as a parameter. We define the operations of inserting an element into, and searching for an element in an ordered binary tree; the bulk of the report is devoted to PVS proofs of some useful properties of these operations. These proofs illustrate various approaches to proving properties of abstract datatype operations. They also describe the built-in capabilities of the PVS proof checker for simplifying abstract datatype expressions.

A System for Extracting Study Design Parameters from Nutritional Genomics Abstracts

Directory of Open Access Journals (Sweden)

Kelly Cassidy

2013-06-01

Full Text Available The extraction of study design parameters from biomedical journal articles is an important problem in natural language processing (NLP. Such parameters define the characteristics of a study, such as the duration, the number of subjects, and their profile. Here we present a system for extracting study design parameters from sentences in article abstracts. This system will be used as a component of a larger system for creating nutrigenomics networks from articles in the nutritional genomics domain. The algorithms presented consist of manually designed rules expressed either as regular expressions or in terms of sentence parse structure. A number of filters and NLP tools are also utilized within a pipelined algorithmic framework. Using this novel approach, our system performs extraction at a finer level of granularity than comparable systems, while generating results that surpass the current state of the art.

Model abstraction addressing long-term simulations of chemical degradation of large-scale concrete structures

International Nuclear Information System (INIS)

Jacques, D.; Perko, J.; Seetharam, S.; Mallants, D.

2012-01-01

This paper presents a methodology to assess the spatial-temporal evolution of chemical degradation fronts in real-size concrete structures typical of a near-surface radioactive waste disposal facility. The methodology consists of the abstraction of a so-called full (complicated) model accounting for the multicomponent - multi-scale nature of concrete to an abstracted (simplified) model which simulates chemical concrete degradation based on a single component in the aqueous and solid phase. The abstracted model is verified against chemical degradation fronts simulated with the full model under both diffusive and advective transport conditions. Implementation in the multi-physics simulation tool COMSOL allows simulation of the spatial-temporal evolution of chemical degradation fronts in large-scale concrete structures. (authors)

SERS internship fall 1995 abstracts and research papers

Energy Technology Data Exchange (ETDEWEB)

Davis, Beverly

1996-05-01

This report is a compilation of twenty abstracts and their corresponding full papers of research projects done under the US Department of Energy Science and Engineering Research Semester (SERS) program. Papers cover a broad range of topics, for example, environmental transport, supercomputers, databases, biology. Selected papers were indexed separately for inclusion the the Energy Science and Technology Database.

Reshaping Text Data for Efficient Processing on Amazon EC2

Directory of Open Access Journals (Sweden)

Gabriela Turcu

2011-01-01

Full Text Available Text analysis tools are nowadays required to process increasingly large corpora which are often organized as small files (abstracts, news articles, etc.. Cloud computing offers a convenient, on-demand, pay-as-you-go computing environment for solving such problems. We investigate provisioning on the Amazon EC2 cloud from the user perspective, attempting to provide a scheduling strategy that is both timely and cost effective. We derive an execution plan using an empirically determined application performance model. A first goal of our performance measurements is to determine an optimal file size for our application to consume. Using the subset-sum first fit heuristic we reshape the input data by merging files in order to match as closely as possible the desired file size. This also speeds up the task of retrieving the results of our application, by having the output be less segmented. Using predictions of the performance of our application based on measurements on small data sets, we devise an execution plan that meets a user specified deadline while minimizing cost.

A Breath of Fresh Air / Une boufée d’air frais: Abstracts from the 2012 Canadian Respiratory Conference

Directory of Open Access Journals (Sweden)

Pearce Wilcox

2012-01-01

Full Text Available The present online supplement highlights the poster abstracts selected for presentation at the 5th Annual Canadian Respiratory Conference (CRC held in Vancouver, British Columbia, in April 2012. The CRC is a partnership initiative of the Canadian Thoracic Society, Canadian Respiratory Health Professionals, The Lung Association and the Canadian COPD Alliance and has become the premiere national educational and scientific meeting for the respiratory community in Canada. I would like to acknowledge the leadership and expertise of the Scientific Committee, our conference speakers and abstract presenters, all of whom contributed to the delivery of an excellent program. The next Canadian Respiratory Conference will be held in Québec City, Quebec, April 11 to 13, 2012 (www.lung.ca/crc. We look forward to seeing you there!

The Impact of Hydrochloride Heroin on Mental Flexibility, Abstract Reasoning, Impulsivity, and Attention

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Zahra Alam Mehrjerdi

2011-04-01

Full Text Available Introduction: Drug addiction could lead to severe impairments in executive and neurocognitive functions but study on the impact of hydrochloride heroin on executive functions has remained in infancy in Iran. The aim of this study was to examine the relationship between addiction to hydrochloride heroin and executive functioning in several cognitive domains including mental flexibility, abstract reasoning, impulsivity, and attention. Methods: A total of 60 cases of young male addicts aged 18 to 21 were recruited from outpatient addiction clinics in Karaj city and were matched with 60 non-drug using controls. A test battery including the Wisconsin Card Sorting Test (WCST, Porteus Maze Test (PMQS, Serial Seven Subtraction Test (SSST, and Color Trails Test (CTT were administered respectively. Results: The patient group showed more problems in impulse control compared with the control group, while mental flexibility, abstract reasoning and attention were not affected. Discussion: The findings indicated that addiction to hydrochloride heroin had a negative effect on impulse control. This issue could reflect the role of impaired inhibitory control on drug-seeking behaviors and relapse. Special treatment programs must be tailored to control impulsivity among addicts to hydrochloride heroin during treatment.

Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles.

Science.gov (United States)

Cohen, K Bretonnel; Lanfranchi, Arrick; Choi, Miji Joo-Young; Bada, Michael; Baumgartner, William A; Panteleyeva, Natalya; Verspoor, Karin; Palmer, Martha; Hunter, Lawrence E

2017-08-17

Coreference resolution is the task of finding strings in text that have the same referent as other strings. Failures of coreference resolution are a common cause of false negatives in information extraction from the scientific literature. In order to better understand the nature of the phenomenon of coreference in biomedical publications and to increase performance on the task, we annotated the Colorado Richly Annotated Full Text (CRAFT) corpus with coreference relations. The corpus was manually annotated with coreference relations, including identity and appositives for all coreferring base noun phrases. The OntoNotes annotation guidelines, with minor adaptations, were used. Interannotator agreement ranges from 0.480 (entity-based CEAF) to 0.858 (Class-B3), depending on the metric that is used to assess it. The resulting corpus adds nearly 30,000 annotations to the previous release of the CRAFT corpus. Differences from related projects include a much broader definition of markables, connection to extensive annotation of several domain-relevant semantic classes, and connection to complete syntactic annotation. Tool performance was benchmarked on the data. A publicly available out-of-the-box, general-domain coreference resolution system achieved an F-measure of 0.14 (B3), while a simple domain-adapted rule-based system achieved an F-measure of 0.42. An ensemble of the two reached F of 0.46. Following the IDENTITY chains in the data would add 106,263 additional named entities in the full 97-paper corpus, for an increase of 76% percent in the semantic classes of the eight ontologies that have been annotated in earlier versions of the CRAFT corpus. The project produced a large data set for further investigation of coreference and coreference resolution in the scientific literature. The work raised issues in the phenomenon of reference in this domain and genre, and the paper proposes that many mentions that would be considered generic in the general domain are not

Monitoring interaction and collective text production through text mining

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Macedo, Alexandra Lorandi

2014-04-01

Full Text Available This article presents the Concepts Network tool, developed using text mining technology. The main objective of this tool is to extract and relate terms of greatest incidence from a text and exhibit the results in the form of a graph. The Network was implemented in the Collective Text Editor (CTE which is an online tool that allows the production of texts in synchronized or non-synchronized forms. This article describes the application of the Network both in texts produced collectively and texts produced in a forum. The purpose of the tool is to offer support to the teacher in managing the high volume of data generated in the process of interaction amongst students and in the construction of the text. Specifically, the aim is to facilitate the teacher’s job by allowing him/her to process data in a shorter time than is currently demanded. The results suggest that the Concepts Network can aid the teacher, as it provides indicators of the quality of the text produced. Moreover, messages posted in forums can be analyzed without their content necessarily having to be pre-read.

Is the motor system necessary for processing action and abstract emotion words? Evidence from focal brain lesions

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Felix R. Dreyer

2015-11-01

Full Text Available Neuroimaging and neuropsychological experiments suggest that modality-preferential cortices, including motor- and somatosensory areas contribute to the semantic processing of action related concrete words. In contrast, a possible role of modality-preferential – including sensorimotor – areas in processing abstract meaning remains under debate. However, recent fMRI studies indicate an involvement of the left sensorimotor cortex in the processing of abstract-emotional words (e.g. love. But are these areas indeed necessary for processing action-related and abstract words? The current study now investigates word processing in two patients suffering from focal brain lesion in the left frontocentral motor system. A speeded lexical decision task (LDT on meticulously matched word groups showed that the recognition of nouns from different semantic categories – related to food, animals, tools and abstract-emotional concepts – was differentially affected. Whereas patient HS with a lesion in dorsolateral central sensorimotor cortex next to the hand area showed a category-specific deficit in recognizing tool words, patient CA suffering from lesion centered in the left SMA was primarily impaired in abstract-emotional word processing. These results point to a causal role of the motor cortex in the semantic processing of both action-related object concepts and abstract-emotional concepts and therefore suggest that the motor areas previously found active in action-related and abstract word processing can serve a meaning-specific necessary role in word recognition. The category-specific nature of the observed dissociations is difficult to reconcile with the idea that sensorimotor systems are somehow peripheral or ‘epiphenomenal’ to meaning and concept processing. Rather, our results are consistent with the claim that cognition is grounded in action and perception and based on distributed action perception circuits reaching into sensorimotor areas.

Technical Note: Determination of the SCS initial abstraction ratio in an experimental watershed in Greece

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E. A. Baltas

2007-11-01

Full Text Available The present study was conducted in an experimental watershed in Attica, Greece, using observed rainfall/runoff events. The objective of the study was the determination of the initial abstraction ratio of the watershed. The average ratio (Ia/S of the entire watershed was equal to 0.014. The corresponding ratio at a subwatershed was 0.037. The difference was attributed to the different spatial distribution of landuses and geological formations at the extent of the watershed. Both of the determined ratios are close to the ratio value of 0.05 that has been suggested from many studies for the improvement of the SCS-CN method.

How to Teach Expository Text Structure to Facilitate Reading Comprehension

Science.gov (United States)

Akhondi, Masoumeh; Malayeri, Faramarz Aziz; Samad, Arshad Abd

2011-01-01

Expository text offers particular challenges to the reader because of the abstract and unfamiliar concepts that it presents. In order to solve these problems in reading classes, students should be taught the hierarchical structure of the expository text and the interrelationships among ideas. This is what experts in this field refer to as text…

Neural correlates of visualizations of concrete and abstract words in preschool children: A developmental embodied approach

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Amedeo eD'angiulli

2015-06-01

Full Text Available The neural correlates of visualization underlying word comprehension were examined in preschool children. On each trial, a concrete or abstract word was delivered binaurally (part 1: post-auditory visualization, followed by a four-picture array (a target plus three distractors (part 2: matching visualization. Children were to select the picture matching the word they heard in part 1. Event-Related Potentials (ERPs locked to each stimulus presentation and task interval were averaged over sets of trials of increasing word abstractness. ERP time-course during both parts of the task showed that early activity (i.e. < 300 ms was predominant in response to concrete words, while activity in response to abstract words became evident only at intermediate (i.e. 300-699 ms and late (i.e. 700-1000 ms ERP intervals. Specifically, ERP topography showed that while early activity during post-auditory visualization was linked to left temporo-parietal areas for concrete words, early activity during matching visualization occurred mostly in occipito-parietal areas for concrete words, but more anteriorly in centro-parietal areas for abstract words. In intermediate ERPs, post-auditory visualization coincided with parieto-occipital and parieto-frontal activity in response to both concrete and abstract words, while in matching visualization a parieto-central activity was common to both types of words. In the late ERPs for both types of words, the post-auditory visualization involved right-hemispheric activity following a post-anterior pathway sequence: occipital, parietal and temporal areas; conversely, matching visualization involved left-hemispheric activity following an ant-posterior pathway sequence: frontal, temporal, parietal and occipital areas. These results suggest that, similarly for concrete and abstract words, meaning in young children depends on variably complex visualization processes integrating visuo-auditory experiences and supramodal embodying

Abstraction and art.

Science.gov (United States)

Gortais, Bernard

2003-07-29

In a given social context, artistic creation comprises a set of processes, which relate to the activity of the artist and the activity of the spectator. Through these processes we see and understand that the world is vaster than it is said to be. Artistic processes are mediated experiences that open up the world. A successful work of art expresses a reality beyond actual reality: it suggests an unknown world using the means and the signs of the known world. Artistic practices incorporate the means of creation developed by science and technology and change forms as they change. Artists and the public follow different processes of abstraction at different levels, in the definition of the means of creation, of representation and of perception of a work of art. This paper examines how the processes of abstraction are used within the framework of the visual arts and abstract painting, which appeared during a period of growing importance for the processes of abstraction in science and technology, at the beginning of the twentieth century. The development of digital platforms and new man-machine interfaces allow multimedia creations. This is performed under the constraint of phases of multidisciplinary conceptualization using generic representation languages, which tend to abolish traditional frontiers between the arts: visual arts, drama, dance and music.

ChemicalTagger: A tool for semantic text-mining in chemistry

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Hawizy Lezan

2011-05-01

Full Text Available Abstract Background The primary method for scientific communication is in the form of published scientific articles and theses which use natural language combined with domain-specific terminology. As such, they contain free owing unstructured text. Given the usefulness of data extraction from unstructured literature, we aim to show how this can be achieved for the discipline of chemistry. The highly formulaic style of writing most chemists adopt make their contributions well suited to high-throughput Natural Language Processing (NLP approaches. Results We have developed the ChemicalTagger parser as a medium-depth, phrase-based semantic NLP tool for the language of chemical experiments. Tagging is based on a modular architecture and uses a combination of OSCAR, domain-specific regex and English taggers to identify parts-of-speech. The ANTLR grammar is used to structure this into tree-based phrases. Using a metric that allows for overlapping annotations, we achieved machine-annotator agreements of 88.9% for phrase recognition and 91.9% for phrase-type identification (Action names. Conclusions It is possible parse to chemical experimental text using rule-based techniques in conjunction with a formal grammar parser. ChemicalTagger has been deployed for over 10,000 patents and has identified solvents from their linguistic context with >99.5% precision.

Overabundant milk supply: an alternative way to intervene by full drainage and block feeding

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van Veldhuizen-Staas Caroline GA

2007-08-01

Full Text Available Abstract Background Too much or too little milk production are common problems in a lactation consultant's practice. Whereas underproduction is widely discussed in the lactation literature, overabundant milk supply is not. In my practice I work with women who experience moderate to severe oversupply syndrome. In most cases the syndrome can be successfully treated with full removal of milk followed by unilateral breastfeeding ad lib with the same breast offered at every breastfeed in a certain time block ("block feeding". Case presentations Four cases of over-supply of breast milk are presented. The management and outcome of each case is described. Conclusion Overabundant milk supply is an often under-diagnosed condition in otherwise healthy lactating women. Full drainage and "block feeding" offer an adequate and userfriendly way to normalize milk production and treat symptoms in both mother and child.

Completeness of Lyapunov Abstraction

DEFF Research Database (Denmark)

Wisniewski, Rafal; Sloth, Christoffer

2013-01-01

the vector field, which allows the generation of a complete abstraction. To compute the functions that define the subdivision of the state space in an algorithm, we formulate a sum of squares optimization problem. This optimization problem finds the best subdivisioning functions, with respect to the ability......This paper addresses the generation of complete abstractions of polynomial dynamical systems by timed automata. For the proposed abstraction, the state space is divided into cells by sublevel sets of functions. We identify a relation between these functions and their directional derivatives along...

It is presented initially: linear dislocation & inter-language strategies in Brazilian Academic abstracts in english and portuguese It is presented initially: linear dislocation & inter-language strategies in Brazilian Academic abstracts in english and portuguese

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Tim Johns

2008-04-01

Full Text Available In Brazil, as in the rest of the world, the academic community is under pressure to publish in English so that research findings can enter the mainstream of international debate as rapidly and effectively as possible. For the same reason, it is the editorial policy of most Brazilian academic journals that all papers, whether published in Portuguese or English, should be accompanied by abstracts in both languages. If the inclusion of English abstracts is not to become a meaningless ritual, it is a matter of some importance to evaluate how well the writers of such abstracts succeed in communicating the substance of their work to their peers outside Brazil, and also to examine the linguistic features that may facilitate or interfere with that communication. Although preliminary work has been undertaken by the author on both these questions, the present paper addresses the second only, with special reference to a problem at the intersection of syntax and discourse. In Brazil, as in the rest of the world, the academic community is under pressure to publish in English so that research findings can enter the mainstream of international debate as rapidly and effectively as possible. For the same reason, it is the editorial policy of most Brazilian academic journals that all papers, whether published in Portuguese or English, should be accompanied by abstracts in both languages. If the inclusion of English abstracts is not to become a meaningless ritual, it is a matter of some importance to evaluate how well the writers of such abstracts succeed in communicating the substance of their work to their peers outside Brazil, and also to examine the linguistic features that may facilitate or interfere with that communication. Although preliminary work has been undertaken by the author on both these questions, the present paper addresses the second only, with special reference to a problem at the intersection of syntax and discourse.

Metaphor: Bridging embodiment to abstraction.

Science.gov (United States)

Jamrozik, Anja; McQuire, Marguerite; Cardillo, Eileen R; Chatterjee, Anjan

2016-08-01

Embodied cognition accounts posit that concepts are grounded in our sensory and motor systems. An important challenge for these accounts is explaining how abstract concepts, which do not directly call upon sensory or motor information, can be informed by experience. We propose that metaphor is one important vehicle guiding the development and use of abstract concepts. Metaphors allow us to draw on concrete, familiar domains to acquire and reason about abstract concepts. Additionally, repeated metaphoric use drawing on particular aspects of concrete experience can result in the development of new abstract representations. These abstractions, which are derived from embodied experience but lack much of the sensorimotor information associated with it, can then be flexibly applied to understand new situations.

A Comparative Analytic Study between Mulla Sadra and Mulla Hadi Sabzewari is Opinions on Beyond Abstract Status of Human Being

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Ali ArshadRiahi

2013-03-01

Full Text Available   In this paper one of human characteristic namely beyond abstract status is studied from view point of two great philosophers: Mulla Sadra and Mulla Hadi Sabzewari. In philosophic knowledge of human being, transcendental theosophy and its commentators, have paid a particular attention to this certain status and have proved its bases. In this article , opinions of Mulla Sadra and Mulla Hadi Sabzewari on this status are studied and it is concluded that from viewpoint of these two sages, human being, having no determined status, can pass all stages and reach to a stage that is abstract of both: matter and quality. Although these two sages demonstrate and express this subject in a little different ways and this lead them to two different horizon of vision about this status.

The triconnected abstraction of process models

OpenAIRE

Polyvyanyy, Artem; Smirnov, Sergey; Weske, Mathias

2009-01-01

Contents: Artem Polyvanny, Sergey Smirnow, and Mathias Weske The Triconnected Abstraction of Process Models 1 Introduction 2 Business Process Model Abstraction 3 Preliminaries 4 Triconnected Decomposition 4.1 Basic Approach for Process Component Discovery 4.2 SPQR-Tree Decomposition 4.3 SPQR-Tree Fragments in the Context of Process Models 5 Triconnected Abstraction 5.1 Abstraction Rules 5.2 Abstraction Algorithm 6 Related Work and Conclusions

THE EFFECT OF TEACHING WITHIN-TEXT KEY WORDS ON STUDENTS’ PERFORMANCE IN READING COMPREHENSION

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Mohammad Reza Khodasenas

2013-07-01

Full Text Available Abstract: The present study was conducted to investigate the effects of teaching within-text key word synonyms, opposites and related words on students’ performance on reading comprehension of TOEFL among Iranian EFL learners. To carry out the research, 60 Iranian EFL learners, who participated in a TOEFL preparation course, were selected as the participants of the study. Afterward they were randomly assigned into experimental and comparison groups. The experimental group was given a treatment including within-text key word synonyms, opposites and their translations, while the comparison group was given a placebo. To collect the required data, two instruments (a pre-test, and a post-test were administered to both groups during the experimentation. Subsequently, students’ scores were collected through the administration of different tests and the results were statistically analyzed. The results of these analyses revealed that the experimental group outperformed the comparison group and thus, it was concluded that teaching within-text key word synonyms, opposites and related words can improve the reading comprehension ability and general proficiency of EFL language learners.

A matter of font type: The effect of serifs on the evaluation of scientific abstracts.

Science.gov (United States)

Kaspar, Kai; Wehlitz, Thea; von Knobelsdorff, Sara; Wulf, Tim; von Saldern, Marie Antoinette Oktavie

2015-10-01

Text-based communication is one of the substantial ways of spreading scientific information. While the content and contextual aspects of written words have been widely researched, the impact of font characteristics on text perception is an almost blank page. The following study deals with the influence of serifs on the evaluation of online-presented scientific abstracts. Yet there is only evidence for faster reading times when texts are presented in sans-serif fonts, although the opposite is stated in parts of the literature. The present work examines if the presence or absence of serifs also have an impact on the appraisal of scientific texts when all other important font characteristics do not change. For this purpose, 188 university students participated in an online experiment and rated different aspects of scientific abstracts as well as of the research outlined in the abstracts. The results show that missing serifs led to increased reading speed. However, and in contrast to the perceptual fluency hypothesis, the presence of serifs had a positive effect on all evaluation dimensions. The results of a second study with 187 participants also indicated that reading fluency counteracted the liking of texts. Implications for future studies and media production are discussed. © 2015 International Union of Psychological Science.

A Modal-Logic Based Graph Abstraction

NARCIS (Netherlands)

Bauer, J.; Boneva, I.B.; Kurban, M.E.; Rensink, Arend; Ehrig, H; Heckel, R.; Rozenberg, G.; Taentzer, G.

2008-01-01

Infinite or very large state spaces often prohibit the successful verification of graph transformation systems. Abstract graph transformation is an approach that tackles this problem by abstracting graphs to abstract graphs of bounded size and by lifting application of productions to abstract

Seismic Consequence Abstraction

International Nuclear Information System (INIS)

Gross, M.

2004-01-01

The primary purpose of this model report is to develop abstractions for the response of engineered barrier system (EBS) components to seismic hazards at a geologic repository at Yucca Mountain, Nevada, and to define the methodology for using these abstractions in a seismic scenario class for the Total System Performance Assessment - License Application (TSPA-LA). A secondary purpose of this model report is to provide information for criticality studies related to seismic hazards. The seismic hazards addressed herein are vibratory ground motion, fault displacement, and rockfall due to ground motion. The EBS components are the drip shield, the waste package, and the fuel cladding. The requirements for development of the abstractions and the associated algorithms for the seismic scenario class are defined in ''Technical Work Plan For: Regulatory Integration Modeling of Drift Degradation, Waste Package and Drip Shield Vibratory Motion and Seismic Consequences'' (BSC 2004 [DIRS 171520]). The development of these abstractions will provide a more complete representation of flow into and transport from the EBS under disruptive events. The results from this development will also address portions of integrated subissue ENG2, Mechanical Disruption of Engineered Barriers, including the acceptance criteria for this subissue defined in Section 2.2.1.3.2.3 of the ''Yucca Mountain Review Plan, Final Report'' (NRC 2003 [DIRS 163274])

Seismic Consequence Abstraction

Energy Technology Data Exchange (ETDEWEB)

M. Gross

2004-10-25

The primary purpose of this model report is to develop abstractions for the response of engineered barrier system (EBS) components to seismic hazards at a geologic repository at Yucca Mountain, Nevada, and to define the methodology for using these abstractions in a seismic scenario class for the Total System Performance Assessment - License Application (TSPA-LA). A secondary purpose of this model report is to provide information for criticality studies related to seismic hazards. The seismic hazards addressed herein are vibratory ground motion, fault displacement, and rockfall due to ground motion. The EBS components are the drip shield, the waste package, and the fuel cladding. The requirements for development of the abstractions and the associated algorithms for the seismic scenario class are defined in ''Technical Work Plan For: Regulatory Integration Modeling of Drift Degradation, Waste Package and Drip Shield Vibratory Motion and Seismic Consequences'' (BSC 2004 [DIRS 171520]). The development of these abstractions will provide a more complete representation of flow into and transport from the EBS under disruptive events. The results from this development will also address portions of integrated subissue ENG2, Mechanical Disruption of Engineered Barriers, including the acceptance criteria for this subissue defined in Section 2.2.1.3.2.3 of the ''Yucca Mountain Review Plan, Final Report'' (NRC 2003 [DIRS 163274]).

HighWire Free Online Full-text Articles

Science.gov (United States)

Journal of Lipid Research all articles after 12 months Journal of Medical Ethics all articles 1 Jan 1975 Anticancer Research all articles after 2 years every Jan. Antimicrobial Agents and Chemotherapy all articles BMJ Open Diabetes Research & Care free site BMJ Open Gastroenterology free site BMJ Open

Modal abstractions of concurrent behavior

DEFF Research Database (Denmark)

Nielson, Flemming; Nanz, Sebastian; Nielson, Hanne Riis

2011-01-01

We present an effective algorithm for the automatic construction of finite modal transition systems as abstractions of potentially infinite concurrent processes. Modal transition systems are recognized as valuable abstractions for model checking because they allow for the validation as well...... as refutation of safety and liveness properties. However, the algorithmic construction of finite abstractions from potentially infinite concurrent processes is a missing link that prevents their more widespread usage for model checking of concurrent systems. Our algorithm is a worklist algorithm using concepts...... from abstract interpretation and operating upon mappings from sets to intervals in order to express simultaneous over- and underapprox-imations of the multisets of process actions available in a particular state. We obtain a finite abstraction that is 3-valued in both states and transitions...

Profiling vocabulary in psychology journal abstracts: A comparison between Iranian and Anglo-American journals

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Is’haaq Akbarian

2017-01-01

Full Text Available Lexical profiling has yielded fruitful results for language description and pedagogy (Liu, 2014, and particularly highlighted the significance of academic vocabulary for EFL learners in this process. This investigation, likewise, attempts to comparatively profile the vocabulary, more particularly the academic vocabulary, in the ‘abstract’ section of scholarly articles in Iranian and Anglo-American refereed journals in psychology. Iranian journals under study publish articles in Persian but also include an English abstract whereas the latter publish papers in English. For this purpose, a corpus (consisting of 307,126 words, with two sub-corpora of almost similar size and characteristics, was collected from Iranian and Anglo-American journals and analyzed through the software Range. The analyses conducted show a coverage of over 15 percent and the use of over 500 words of the Academic Word List (AWL in both Iranian and Anglo-American sub-corpora. However, there are variations in academic and nonacademic vocabulary use in abstracts across the two sub-corpora above. Most of the academic words used belong to the beginning AWL sub-lists. Pedagogical implications are made for reading and writing, particularly in EAP contexts.

The deleuzian abstract machines

DEFF Research Database (Denmark)

Werner Petersen, Erik

2005-01-01

To most people the concept of abstract machines is connected to the name of Alan Turing and the development of the modern computer. The Turing machine is universal, axiomatic and symbolic (E.g. operating on symbols). Inspired by Foucault, Deleuze and Guattari extended the concept of abstract...

Typesafe Abstractions for Tensor Operations

OpenAIRE

Chen, Tongfei

2017-01-01

We propose a typesafe abstraction to tensors (i.e. multidimensional arrays) exploiting the type-level programming capabilities of Scala through heterogeneous lists (HList), and showcase typesafe abstractions of common tensor operations and various neural layers such as convolution or recurrent neural networks. This abstraction could lay the foundation of future typesafe deep learning frameworks that runs on Scala/JVM.

Inventory Abstraction

International Nuclear Information System (INIS)

Leigh, C.

2000-01-01

The purpose of the inventory abstraction as directed by the development plan (CRWMS M and O 1999b) is to: (1) Interpret the results of a series of relative dose calculations (CRWMS M and O 1999c, 1999d). (2) Recommend, including a basis thereof, a set of radionuclides that should be modeled in the Total System Performance Assessment in Support of the Site Recommendation (TSPA-SR) and the Total System Performance Assessment in Support of the Final Environmental Impact Statement (TSPA-FEIS). (3) Provide initial radionuclide inventories for the TSPA-SR and TSPA-FEIS models. (4) Answer the U.S. Nuclear Regulatory Commission (NRC)'s Issue Resolution Status Report ''Key Technical Issue: Container Life and Source Term'' (CLST IRSR) (NRC 1999) key technical issue (KTI): ''The rate at which radionuclides in SNF [Spent Nuclear Fuel] are released from the EBS [Engineered Barrier System] through the oxidation and dissolution of spent fuel'' (Subissue 3). The scope of the radionuclide screening analysis encompasses the period from 100 years to 10,000 years after the potential repository at Yucca Mountain is sealed for scenarios involving the breach of a waste package and subsequent degradation of the waste form as required for the TSPA-SR calculations. By extending the time period considered to one million years after repository closure, recommendations are made for the TSPA-FEIS. The waste forms included in the inventory abstraction are Commercial Spent Nuclear Fuel (CSNF), DOE Spent Nuclear Fuel (DSNF), High-Level Waste (HLW), naval Spent Nuclear Fuel (SNF), and U.S. Department of Energy (DOE) plutonium waste. The intended use of this analysis is in TSPA-SR and TSPA-FEIS. Based on the recommendations made here, models for release, transport, and possibly exposure will be developed for the isotopes that would be the highest contributors to the dose given a release to the accessible environment. The inventory abstraction is important in assessing system performance because

Eighth International Conference on Neutron Scattering ICNS2005. Final Programme and Abstract Book

International Nuclear Information System (INIS)

2005-01-01

Full text: This conference encompassed a very wide range of neutron-related research. Topics addressed ranged from almost all applications of neutron scattering and diffraction like discovering magnetic ordering, magnetic properties and structural analysis, negative thermal expansion, spin states, proton dynamics, crystal structure, phase transitions and phase morphology, neutron spin echo to neutron powder diffraction studies and new generation neutron analysis methods as well as x-ray reflectivity versus neutron reflectivity, neutron resonance, cold and thermal neutron studies and spectrometers. Areas of research covered bacteria, DNA, drugs targeting, enzyme arrangement, structure of cholesterol, lung surfactant action, nanocapsules, disease, muscles, lipids, liquids, crystals, industrial gauges, metals, rare earths, shielding and geopolymers. Not all abstracts are included in this input; there exists an emphasis on Australian contributions and those from ANSTO

Analogical scaffolding and the learning of abstract ideas in physics: An example from electromagnetic waves

Directory of Open Access Journals (Sweden)

Noah D. Finkelstein

2007-06-01

Full Text Available This paper describes a model of analogy, analogical scaffolding, which explains present and prior results of student learning with analogies. We build on prior models of representation, blending, and layering of ideas. Extending this model’s explanatory power, we propose ways in which the model can be applied to design a curriculum directed at teaching abstract ideas in physics using multiple, layered analogies. We report on a recent empirical study that motivates this model. Students taught about electromagnetic waves in a curriculum that builds on the model of analogical scaffolding posted substantially greater gains pre- to postinstruction than students taught using a more traditional (non-analogy-based tutorial (21% vs 7%.

PHILOSOPHICAL AND PEDAGOGICAL PRECONDITIONS AND DEVELOPMENT ALGORITHM OF THE ASCENT FROM THE ABSTRACT TO THE CONCRETE IN V. V. DAVIDOV’S DIDACTICS

Directory of Open Access Journals (Sweden)

N. K. Chapayev

2013-01-01

Full Text Available The paper considers the problem of implementing the method of the ascent from the abstract to the concrete in education. The author emphasizes the interrelation between pedagogy and philosophy, as well as the need for their cooperation especially at the time of considerable changes in social and educational spheres.The poly-modal conceptual nature of the abstract and concrete makes it possible to attribute to them respectively the positive and negative values. By analogy with the «bad infinity», the author introduces the concepts of «bad abstract» and «abstract pedagogy» typical for the modern educational practices disregarding the specifics of the concrete areas.The historical and logical analysis of implementing the method in the Russian pedagogy demonstrates that, in spite of its fairly long development history, a systematic technological formalization can be found only in V. V. Davydov's didactics.Based on V. V. Davydov’s concept of developing education, the author makes the following conclusion: as a cognitive method, the ascent from the abstract to the concrete develops theoretical thinking, in-depth understanding, personal attitude to the acquired knowledge and adequate behavior strategies. Therefore, the given method facilitates harmonious personal development. 

Pilot evaluation of the text4baby mobile health program

Directory of Open Access Journals (Sweden)

Evans William Douglas

2012-11-01

Full Text Available Abstract Background Mobile phone technologies for health promotion and disease prevention have evolved rapidly, but few studies have tested the efficacy of mobile health in full-fledged programs. Text4baby is an example of mobile health based on behavioral theory, and it delivers text messages to traditionally underserved pregnant women and new mothers to change their health, health care beliefs, practices, and behaviors in order to improve clinical outcomes. The purpose of this pilot evaluation study is to assess the efficacy of this text messaging campaign. Methods We conducted a randomized pilot evaluation study. All participants were pregnant women first presenting for care at the Fairfax County, Virginia Health Department. We randomized participants to enroll in text4baby and receive usual health care (intervention, or continue simply to receive usual care (control. We then conducted a 24-item survey by telephone of attitudes and behaviors related to text4baby. We surveyed participants at baseline, before text4baby was delivered to the intervention group, and at follow-up at approximately 28 weeks of baby’s gestational age. Results We completed 123 baseline interviews in English and in Spanish. Overall, the sample was predominantly of Hispanic origin (79.7% with an average age of 27.6 years. We completed 90 follow-up interviews, and achieved a 73% retention rate. We used a logistic generalized estimating equation model to evaluate intervention effects on measured outcomes. We found a significant effect of text4baby intervention exposure on increased agreement with the attitude statement “I am prepared to be a new mother” (OR = 2.73, CI = 1.04, 7.18, p = 0.042 between baseline and follow-up. For those who had attained a high school education or greater, we observed a significantly higher overall agreement to attitudes against alcohol consumption during pregnancy (OR = 2.80, CI = 1.13, 6.90, p = 0.026. We also observed a

Text mining, a race against time? An attempt to quantify possible variations in text corpora of medical publications throughout the years.

Science.gov (United States)

Wagner, Mathias; Vicinus, Benjamin; Muthra, Sherieda T; Richards, Tereza A; Linder, Roland; Frick, Vilma Oliveira; Groh, Andreas; Rubie, Claudia; Weichert, Frank

2016-06-01

The continuous growth of medical sciences literature indicates the need for automated text analysis. Scientific writing which is neither unitary, transcending social situation nor defined by a timeless idea is subject to constant change as it develops in response to evolving knowledge, aims at different goals, and embodies different assumptions about nature and communication. The objective of this study was to evaluate whether publication dates should be considered when performing text mining. A search of PUBMED for combined references to chemokine identifiers and particular cancer related terms was conducted to detect changes over the past 36 years. Text analyses were performed using freeware available from the World Wide Web. TOEFL Scores of territories hosting institutional affiliations as well as various readability indices were investigated. Further assessment was conducted using Principal Component Analysis. Laboratory examination was performed to evaluate the quality of attempts to extract content from the examined linguistic features. The PUBMED search yielded a total of 14,420 abstracts (3,190,219 words). The range of findings in laboratory experimentation were coherent with the variability of the results described in the analyzed body of literature. Increased concurrence of chemokine identifiers together with cancer related terms was found at the abstract and sentence level, whereas complexity of sentences remained fairly stable. The findings of the present study indicate that concurrent references to chemokines and cancer increased over time whereas text complexity remained stable. Copyright © 2016 Elsevier Ltd. All rights reserved.

SCHOOL LINGUISTIC CREATIVITY BASED ON SCIENTIFIC GEOGRAPHICAL TEXTS

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VIORICA BLÎNDĂ

2012-01-01

Full Text Available The analysis and observation of the natural environment and of the social and economic one, observing phenomena, objects, beings, and geographical events are at the basis of producing geographical scientific texts. The symbols of iconotexts and cartotexts are another source of inspiration for linguistic interpretation. The linguistic creations that we selected for our study are the scientific analysis, the commentary, the characterization, the parallel, the synthesis, epitomizing and abstracting, the scientific communication, the essay, and the scientific description. The representations on maps, photos, graphics and profiles are translated into verbal or written expression in order to render geographical scientific information from diagrams and images through diverse discursive procedures. Through school linguistic creations, teachers develop their students’ observation spirit, in a written and oral form, their geographical thinking through metaphors, they develop and stimulate their students’ imagination and fantasy, their cognitive, reflexive and affective sensitivity, their abilities to express themselves, to present and argument in a scientific way according to different criteria (sufficiency, demonstrative reasoning, lineal reasoning, pros and cons, giving examples, inferential deduction through using truth tables, etc.. Trough description, students give names and define geographical objects and beings (plants, animals, and people according to their form and aspect, they explain toponyms and appellatives, they classify and make hierarchies, they define their identity through processes of differentiation, emblematizing, personification, location in time and space.

Book of Abstracts

International Nuclear Information System (INIS)

2013-06-01

ANIMMA 2013 is the third of a series of conferences devoted to endorsing and promoting scientific and technical activities based on nuclear instrumentation and measurements. The main objective of ANIMMA conference is to unite the various scientific communities not only involved in nuclear instrumentation and measurements, but also in nuclear medicine and radiation. The conference is all about getting scientists, engineers and the industry to meet, exchange cultures and identify new scientific and technical prospects to help overcome both current and future unresolved issues. The conference provides scientists and engineers with a veritable opportunity to compare their latest research and development in different areas: physics, nuclear energy, nuclear fuel cycle, safety, security, future energies (GEN III+, GENIV, ITER, ...). The conference topics include instrumentation and measurement methods for: Fundamental physics; Fusion diagnostics and technology; Nuclear power reactors; Research reactors; Nuclear fuel cycle; Decommissioning, dismantling and remote handling; Safeguards, homeland security; Severe accident monitoring; Environmental and medical sciences; Education, training and outreach. This document brings together the abstracts of the presentations. Each presentation (full paper) is analysed separately and entered in INIS

SparkText: Biomedical Text Mining on Big Data Framework.

Science.gov (United States)

Ye, Zhan; Tafti, Ahmad P; He, Karen Y; Wang, Kai; He, Max M

Many new biomedical research articles are published every day, accumulating rich information, such as genetic variants, genes, diseases, and treatments. Rapid yet accurate text mining on large-scale scientific literature can discover novel knowledge to better understand human diseases and to improve the quality of disease diagnosis, prevention, and treatment. In this study, we designed and developed an efficient text mining framework called SparkText on a Big Data infrastructure, which is composed of Apache Spark data streaming and machine learning methods, combined with a Cassandra NoSQL database. To demonstrate its performance for classifying cancer types, we extracted information (e.g., breast, prostate, and lung cancers) from tens of thousands of articles downloaded from PubMed, and then employed Naïve Bayes, Support Vector Machine (SVM), and Logistic Regression to build prediction models to mine the articles. The accuracy of predicting a cancer type by SVM using the 29,437 full-text articles was 93.81%. While competing text-mining tools took more than 11 hours, SparkText mined the dataset in approximately 6 minutes. This study demonstrates the potential for mining large-scale scientific articles on a Big Data infrastructure, with real-time update from new articles published daily. SparkText can be extended to other areas of biomedical research.

Nuclear medicine. Abstracts; Nuklearmedizin 2000. Abstracts

Energy Technology Data Exchange (ETDEWEB)

Anon.

2000-07-01

This issue of the journal contains the abstracts of the 183 conference papers as well as 266 posters presented at the conference. Subject fields covered are: Neurology, psychology, oncology, pediatrics, radiopharmacy, endocrinology, EDP, measuring equipment and methods, radiological protection, cardiology, and therapy. (orig./CB) [German] Die vorliegende Zeitschrift enthaelt die Kurzfassungen der 183 auf der Tagung gehaltenen Vortraege sowie der 226 praesentierten Poster, die sich mit den folgenden Themen befassten: Neurologie, Psychiatrie, Onkologie, Paediatrie, Radiopharmazie, Endokrinologie, EDV, Messtechnik, Strahlenschutz, Kardiologie sowie Therapie. (MG)

Mechanical Engineering Department technical abstracts

International Nuclear Information System (INIS)

Denney, R.M.

1982-01-01

The Mechanical Engineering Department publishes listings of technical abstracts twice a year to inform readers of the broad range of technical activities in the Department, and to promote an exchange of ideas. Details of the work covered by an abstract may be obtained by contacting the author(s). Overall information about current activities of each of the Department's seven divisions precedes the technical abstracts

Impact of Diagrams on Recalling Sequential Elements in Expository Texts.

Science.gov (United States)

Guri-Rozenblit, Sarah

1988-01-01

Examines the instructional effectiveness of abstract diagrams on recall of sequential relations in social science textbooks. Concludes that diagrams assist significantly the recall of sequential relations in a text and decrease significantly the rate of order mistakes. (RS)

A New English?Arabic Parallel Text Corpus for Lexicographic Applications

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Hashan Al-Ajmi

2011-10-01

Full Text Available

Abstract: Bilingual lexicographers, translation specialists and English teachers in the Arabworld do not have access to computerized corpora of parallel texts for the English–Arabic languagepair. This project has been carried out to meet this requirement by establishing the first generalparallel corpus of English texts and their Arabic translations. The first phase of the project involvedthe selection of general source texts having appropriate lexical and stylistic features. The chosensource texts deal with a variety of topics such as the environment, globalization, psychology, history,politics, drama, etc. Their Arabic translations were taken from The World of Knowledge seriespublished by the National Council for Culture, Arts and Letters (NCCAL in Kuwait.

Keywords: PARALLEL CORPUS, LEXICOGRAPHY, TRANSLATION, BILINGUAL DICTIONARY,COLLOCATIONS, ALIGNMENT, SYNONYMS, DERIVATIVES, ANTONYMS, GLOSSARY,FREQUENCY

Opsomming: 'n Nuwe Engels–Arabiese parallelletekskorpus vir leksikografiesetoepassings Tweetalige leksikograwe, vertaalkundiges en Engelsonderwysers in dieArabiese wêreld het nie toegang tot gerekenariseerde korpusse van parallelle tekste vir die Engels–Arabiese taalpaar nie. Hierdie projek is onderneem om in dié behoefte te voorsien deur die eerstealgemene parallelle korpus van Engelse tekste en hul Arabiese vertalings tot stand te bring. Dieeerste fase van die projek het die keuse van algemene brontekste behels wat geskikte leksikale enstilistiese eienskappe besit. Die gekose brontekste handel oor 'n verskeidenheid onderwerpe soosdie omgewing, globalisering, psigologie, geskiedenis, politiek, drama, ens. Hul Arabiese vertalingsis geneem uit The World of Knowledge-reeks gepubliseer deur die National Council for Culture, Artsand Letters (NCCAL in Koeweit.

Sleutelwoorde: PARALLELLE KORPUS, LEKSIKOGRAFIE, VERTALING, TWEETALIGEWOORDEBOEK, KOLLOKASIES, OOREENSTEMMING, SINONIEME, AFLEIDINGS, ANTONIEME

Abstracts of papers and poster sessions of the 3rd International Evidence Based

Directory of Open Access Journals (Sweden)

2006-03-01

Full Text Available Presentation types. Research Papers are full length papers (not to exceed 10 pages that critically discuss completed work demonstrating the application of research in practice. Discussion papers critically exploring issues in the application of evidence based practice to inform professional practice were also welcome. Accepted Research Papers are published on the conference website at: http://conferences.alia.org.au/ebl2005/ Hot Topics are shorter papers (1000 words that critically outline research‐in‐progress. Hot Topics provide an opportunity to discuss, and receive constructive feedback on an ongoing research project. Practical papers that identify and facilitate professional dialogue on key issues within EBL were also welcome. Accepted Hot Topics are published on the conference website at: http://conferences.alia.org.au/ebl2005/ Posters will allow for the presentation of new developments in evidence based practice and work in progress. Posters offer an excellent opportunity for new conference presenters. Accepted Posters abstracts are available on the conference website at: http://conferences.alia.org.au/ebl2005/

Comparative Study of Temporal Aspects of Data Collection Using Remote Database vs. Abstract Database in WSN

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Abderrahmen BELFKIH

2015-06-01

Full Text Available The real-time aspect is an important factor for Wireless Sensor Network (WSN applications, which demand a timely data delivery, to reflect the current state of the environment. However, most existing works in the field of sensor networks are only interested in data processing and energy consumption, to improve the lifetime of WSN. Extensive researches have been done on data processing in WSN. Some works have been interested in improving data collection methods, and others have focused on various query processing techniques. In recent years, the query processing using abstract database technology like Cougar and TinyDB has shown efficient results in many researches. This paper presents a study of timing properties through two data processing techniques for WSN. The first is based on a warehousing approach, in which data are collected and stored on a remote database. The second is based on query processing using an abstract database like TinyDB. This study has allowed us to identify some factors which enhance the respect of temporal constraints.

‘Abstract Endangerment’, Two Harm Principles, and Two Routes to Criminalisation

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R.A. Duff

2015-12-01

Full Text Available We need to distinguish, as theorists too often fail to distinguish, two distinct harm principles. One, the Harmful Conduct Principle, concerns the criminalisation of conduct that is itself harmful or dangerous: that principle cannot explain how we can have good reason to create offences of so-called ‘abstract endangerment’, of which many road traffic offences are good examples. We can explain such offences as those by appeal to a different harm principle, the Harm Prevention Principle. That principle, however, is a principle not of criminalisation, but of regulation: it gives us reason to regulate conduct if doing so will efficiently prevent harm, without imposing undue burdens on those whose conduct is regulated. We then have reason to criminalise violations of such regulations, not because such violations are always harmful, but if and because they are wrongful. This distinction, between two kinds of principle and two possible routes towards criminalisation, can be drawn whatever goals or values we posit as our starting points.

“Bear-ly” learning: Limits of abstraction in black bear cognition

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Jennifer Vonk

2018-02-01

Full Text Available We presented two American black bears (Ursus americanus with a serial list learning memory task, and one of the bears with a matching-to-sample task. After extended training, both bears demonstrated some success with the memory task but failed to generalize the overarching rule of the task to novel stimuli. Matching to sample proved even more difficult for our bear to learn. We conclude that, despite previous success in training bears to respond to natural categories, quantity discriminations, and other related tasks, that bears may possess a cognitive limitation with regards to learning abstract rules. Future tests using different procedures are necessary to determine whether this is a limit of bears’ cognitive capacities, or a limitation of the current tasks as presented. Future tests should present a larger number of varying stimuli. Ideally, bears of various species should be tested on these tasks to demonstrate species as well as individual differences.

Computer-Generated Abstract Paintings Oriented by the Color Composition of Images

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Mao Li

2017-06-01

Full Text Available Designers and artists often require reference images at authoring time. The emergence of computer technology has provided new conditions and possibilities for artistic creation and research. It has also expanded the forms of artistic expression and attracted many artists, designers and computer experts to explore different artistic directions and collaborate with one another. In this paper, we present an efficient k-means-based method to segment the colors of an original picture to analyze the composition ratio of the color information and calculate individual color areas that are associated with their sizes. This information is transformed into regular geometries to reconstruct the colors of the picture to generate abstract images. Furthermore, we designed an application system using the proposed method and generated many works; some artists and designers have used it as an auxiliary tool for art and design creation. The experimental results of datasets demonstrate the effectiveness of our method and can give us inspiration for our work.

A Review Paper On Exploring Text Link And Spacial-Temporal Information In Social Media Networks

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Dr. Mamta Madan

2015-03-01

Full Text Available ABSTRACT The objective of this paper is to have a literature review on the various methods to mine the knowledge from the social media by taking advantage of embedded heterogeneous information. Specifically we are trying to review different types of mining framework which provides us useful information from these networks that have heterogeneous data types including text spacial-temporal and data association LINK information. Firstly we will discuss the link mining to study the link structure with respect to Social Media SM. Secondly we summarize the various text mining models thirdly we shall review spacial as well the temporal models to extract or detect the frequent related topics from SM. Fourthly we will try to figure out few improvised models that take advantage of the link textual temporal and spacial information which motivates to discover progressive principles and fresh methodologies for DM Data Mining in social media networks SMNs.

Abstracts of oral and poster presentations given at the Ascochyta 2012 Workshop, Córdoba, Spain, 22–26 April 2012

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Teresa Millan

2013-05-01

Full Text Available The third International Ascochyta Workshop was held in Córdoba, Spain 22 - 26 April 2012. This meeting was attended by 70 participants, and 33 oral presentations, 17 posters and 4 invited speeches were presented dealing with Ascochyta blights of the cool season food legumes (peas, lentils, chickpeas and faba beans. In addition, a special session was held on “Food legumes Research in North Africa”. Abstracts of the oral presentations and the posters of the congress are presented in this issue.

Constraint-Based Abstract Semantics for Temporal Logic

DEFF Research Database (Denmark)

Banda, Gourinath; Gallagher, John Patrick

2010-01-01

Abstract interpretation provides a practical approach to verifying properties of infinite-state systems. We apply the framework of abstract interpretation to derive an abstract semantic function for the modal mu-calculus, which is the basis for abstract model checking. The abstract semantic funct...

Speech-To-Text Conversion STT System Using Hidden Markov Model HMM

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Su Myat Mon

2015-06-01

Full Text Available Abstract Speech is an easiest way to communicate with each other. Speech processing is widely used in many applications like security devices household appliances cellular phones ATM machines and computers. The human computer interface has been developed to communicate or interact conveniently for one who is suffering from some kind of disabilities. Speech-to-Text Conversion STT systems have a lot of benefits for the deaf or dumb people and find their applications in our daily lives. In the same way the aim of the system is to convert the input speech signals into the text output for the deaf or dumb students in the educational fields. This paper presents an approach to extract features by using Mel Frequency Cepstral Coefficients MFCC from the speech signals of isolated spoken words. And Hidden Markov Model HMM method is applied to train and test the audio files to get the recognized spoken word. The speech database is created by using MATLAB.Then the original speech signals are preprocessed and these speech samples are extracted to the feature vectors which are used as the observation sequences of the Hidden Markov Model HMM recognizer. The feature vectors are analyzed in the HMM depending on the number of states.

EBS Radionuclide Transport Abstraction

International Nuclear Information System (INIS)

Schreiner, R.

2001-01-01

The purpose of this work is to develop the Engineered Barrier System (EBS) radionuclide transport abstraction model, as directed by a written development plan (CRWMS M and O 1999a). This abstraction is the conceptual model that will be used to determine the rate of release of radionuclides from the EBS to the unsaturated zone (UZ) in the total system performance assessment-license application (TSPA-LA). In particular, this model will be used to quantify the time-dependent radionuclide releases from a failed waste package (WP) and their subsequent transport through the EBS to the emplacement drift wall/UZ interface. The development of this conceptual model will allow Performance Assessment Operations (PAO) and its Engineered Barrier Performance Department to provide a more detailed and complete EBS flow and transport abstraction. The results from this conceptual model will allow PA0 to address portions of the key technical issues (KTIs) presented in three NRC Issue Resolution Status Reports (IRSRs): (1) the Evolution of the Near-Field Environment (ENFE), Revision 2 (NRC 1999a), (2) the Container Life and Source Term (CLST), Revision 2 (NRC 1999b), and (3) the Thermal Effects on Flow (TEF), Revision 1 (NRC 1998). The conceptual model for flow and transport in the EBS will be referred to as the ''EBS RT Abstraction'' in this analysis/modeling report (AMR). The scope of this abstraction and report is limited to flow and transport processes. More specifically, this AMR does not discuss elements of the TSPA-SR and TSPA-LA that relate to the EBS but are discussed in other AMRs. These elements include corrosion processes, radionuclide solubility limits, waste form dissolution rates and concentrations of colloidal particles that are generally represented as boundary conditions or input parameters for the EBS RT Abstraction. In effect, this AMR provides the algorithms for transporting radionuclides using the flow geometry and radionuclide concentrations determined by other

Automatic extraction of ontological relations from Arabic text

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Mohammed G.H. Al Zamil

2014-12-01

The proposed methodology has been designed to analyze Arabic text using lexical semantic patterns of the Arabic language according to a set of features. Next, the features have been abstracted and enriched with formal descriptions for the purpose of generalizing the resulted rules. The rules, then, have formulated a classifier that accepts Arabic text, analyzes it, and then displays related concepts labeled with its designated relationship. Moreover, to resolve the ambiguity of homonyms, a set of machine translation, text mining, and part of speech tagging algorithms have been reused. We performed extensive experiments to measure the effectiveness of our proposed tools. The results indicate that our proposed methodology is promising for automating the process of extracting ontological relations.

Article Abstract

African Journals Online (AJOL)

Abstract. Simple learning tools to improve clinical laboratory practical skills training. B Taye, BSc, MPH. Addis Ababa University, College of Health Sciences, Addis Ababa, ... concerns about the competence of medical laboratory science graduates. ... standardised practical learning guides and assessment checklists would.

Water Pollution Abstracts. Volume 43, Number 4, Abstracts 645-849.

Science.gov (United States)

WATER POLLUTION, *ABSTRACTS, PURIFICATION, WASTES(INDUSTRIAL), CONTROL, SEWAGE, WATER SUPPLIES, PUBLIC HEALTH, PETROLEUM PRODUCTS, DEGRADATION, DAMS...ESTUARIES, PLANKTON, PHOTOSYNTHESIS, VIRUSES, SEA WATER , MICROBIOLOGY, UNITED KINGDOM.

http://www.isarder.org/isardercom/2013vol5issue1/vol5_issue1_article06full_text.PDF

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Suat TEKER

2013-03-01

Full Text Available This study has pointed out that a new version of Build-Operate-Transfer (BOT financing model generated out from classical BOT model can be used for highway financing. The classical BOT, one of the most popular PPP models has been oftenly employed by various countries for financing of large scale public projects. Over the last 20 year period a number of infrastructure projects in Turkey such as natural gas plants, airports and hydro electric power plants were constructed by using BOT model. In this study, the new version of BOT model is implemented on the projected Ankara-İzmir Highway Project. This highway project can be constructed at a lower project cost by using the suggested BOT model compared to the classical BOT model. Therefore, the lower project cost results in a lower toll rate.

Intra-rater and inter-rater reliability of a medical record abstraction study on transition of care after childhood cancer.

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Micòl E Gianinazzi

Full Text Available The abstraction of data from medical records is a widespread practice in epidemiological research. However, studies using this means of data collection rarely report reliability. Within the Transition after Childhood Cancer Study (TaCC which is based on a medical record abstraction, we conducted a second independent abstraction of data with the aim to assess a intra-rater reliability of one rater at two time points; b the possible learning effects between these two time points compared to a gold-standard; and c inter-rater reliability.Within the TaCC study we conducted a systematic medical record abstraction in the 9 Swiss clinics with pediatric oncology wards. In a second phase we selected a subsample of medical records in 3 clinics to conduct a second independent abstraction. We then assessed intra-rater reliability at two time points, the learning effect over time (comparing each rater at two time-points with a gold-standard and the inter-rater reliability of a selected number of variables. We calculated percentage agreement and Cohen's kappa.For the assessment of the intra-rater reliability we included 154 records (80 for rater 1; 74 for rater 2. For the inter-rater reliability we could include 70 records. Intra-rater reliability was substantial to excellent (Cohen's kappa 0-6-0.8 with an observed percentage agreement of 75%-95%. In all variables learning effects were observed. Inter-rater reliability was substantial to excellent (Cohen's kappa 0.70-0.83 with high agreement ranging from 86% to 100%.Our study showed that data abstracted from medical records are reliable. Investigating intra-rater and inter-rater reliability can give confidence to draw conclusions from the abstracted data and increase data quality by minimizing systematic errors.

Figure text extraction in biomedical literature.

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Daehyun Kim

2011-01-01

Full Text Available Figures are ubiquitous in biomedical full-text articles, and they represent important biomedical knowledge. However, the sheer volume of biomedical publications has made it necessary to develop computational approaches for accessing figures. Therefore, we are developing the Biomedical Figure Search engine (http://figuresearch.askHERMES.org to allow bioscientists to access figures efficiently. Since text frequently appears in figures, automatically extracting such text may assist the task of mining information from figures. Little research, however, has been conducted exploring text extraction from biomedical figures.We first evaluated an off-the-shelf Optical Character Recognition (OCR tool on its ability to extract text from figures appearing in biomedical full-text articles. We then developed a Figure Text Extraction Tool (FigTExT to improve the performance of the OCR tool for figure text extraction through the use of three innovative components: image preprocessing, character recognition, and text correction. We first developed image preprocessing to enhance image quality and to improve text localization. Then we adapted the off-the-shelf OCR tool on the improved text localization for character recognition. Finally, we developed and evaluated a novel text correction framework by taking advantage of figure-specific lexicons.The evaluation on 382 figures (9,643 figure texts in total randomly selected from PubMed Central full-text articles shows that FigTExT performed with 84% precision, 98% recall, and 90% F1-score for text localization and with 62.5% precision, 51.0% recall and 56.2% F1-score for figure text extraction. When limiting figure texts to those judged by domain experts to be important content, FigTExT performed with 87.3% precision, 68.8% recall, and 77% F1-score. FigTExT significantly improved the performance of the off-the-shelf OCR tool we used, which on its own performed with 36.6% precision, 19.3% recall, and 25.3% F1-score for

The Eviction of the Human from Human Interest: The Case of Mechanically Generated Text and Textual Analysis

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Adrian Nathan West

2013-05-01

Full Text Available In recent years, automation has encroached upon “soft knowledge” fields long considered the exclusive preserve of human agents, particularly in the production and analysis of texts framed in natural language. Like most technological innovations, automation has been embraced with minimal skepticism: mainstream voices have assumed that new technologies, while changing the type of work available, will continue creating new jobs to replace those it renders obsolete, and harsh criticism has been confined mainly to the ideological fringes. There is reason to believe that this optimism is unjustified with respect to the automation of intellectual labor, which may prove to have pernicious consequences both for the market economy and for human values that yield only poorly to abstract calculation.

European Society of Pediatric Radiology. Abstracts of oral presentations and poster presentations

International Nuclear Information System (INIS)

Small, P.G.

1994-01-01

The 31st Congress of the European Society of Pediatric Radiology covered all aspects of diagnostic radiology. The journal issue presents the abstracts of 77 full papers and 62 poster presentations. (MG) [de

INVENTORY ABSTRACTION

International Nuclear Information System (INIS)

Ragan, G.

2001-01-01

The purpose of the inventory abstraction, which has been prepared in accordance with a technical work plan (CRWMS M andO 2000e for/ICN--02 of the present analysis, and BSC 2001e for ICN 03 of the present analysis), is to: (1) Interpret the results of a series of relative dose calculations (CRWMS M andO 2000c, 2000f). (2) Recommend, including a basis thereof, a set of radionuclides that should be modeled in the Total System Performance Assessment in Support of the Site Recommendation (TSPA-SR) and the Total System Performance Assessment in Support of the Final Environmental Impact Statement (TSPA-FEIS). (3) Provide initial radionuclide inventories for the TSPA-SR and TSPA-FEIS models. (4) Answer the U.S. Nuclear Regulatory Commission (NRC)'s Issue Resolution Status Report ''Key Technical Issue: Container Life and Source Term'' (CLST IRSR) key technical issue (KTI): ''The rate at which radionuclides in SNF [spent nuclear fuel] are released from the EBS [engineered barrier system] through the oxidation and dissolution of spent fuel'' (NRC 1999, Subissue 3). The scope of the radionuclide screening analysis encompasses the period from 100 years to 10,000 years after the potential repository at Yucca Mountain is sealed for scenarios involving the breach of a waste package and subsequent degradation of the waste form as required for the TSPA-SR calculations. By extending the time period considered to one million years after repository closure, recommendations are made for the TSPA-FEIS. The waste forms included in the inventory abstraction are Commercial Spent Nuclear Fuel (CSNF), DOE Spent Nuclear Fuel (DSNF), High-Level Waste (HLW), naval Spent Nuclear Fuel (SNF), and U.S. Department of Energy (DOE) plutonium waste. The intended use of this analysis is in TSPA-SR and TSPA-FEIS. Based on the recommendations made here, models for release, transport, and possibly exposure will be developed for the isotopes that would be the highest contributors to the dose given a release

Literature in the Abstract: Althusser and English Studies in England

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David Margolies

1994-01-01

Full Text Available Althusser's work arrived just when the disintegrating liberal consensus was shaking the ivory towers of the university. Students protested the war in Vietnam as well as the policies of the university. Althusser offered an understanding of this corrupt world and its distorted self-image. These theories provided an exciting new totalization in which life had meaning and intellectuals, a vital role. In literary studies, students and lecturers assumed that works of literature were anti-scientific, preservers of the status quo, without genuine knowledge. Disillusioned, these students and lecturers condemned Literature as an institution and ignored the individual work. To stop teaching the dominant ideology, they found redemption through abstraction—general principles, abstract structures. Academics found it attractive to raise barricades in the mind, not the street. Althusserian ideas showed lecturers and students that what was thought to be a purely literary or factual matter of aesthetic appreciation was really ideological and political, but the arrogance of the Althusserians, who recognized no theory before Althusser and no value in empirical experience, offended potential allies.

Data Abstraction in GLISP.

Science.gov (United States)

Novak, Gordon S., Jr.

GLISP is a high-level computer language (based on Lisp and including Lisp as a sublanguage) which is compiled into Lisp. GLISP programs are compiled relative to a knowledge base of object descriptions, a form of abstract datatypes. A primary goal of the use of abstract datatypes in GLISP is to allow program code to be written in terms of objects,…

Spike Neural Models Part II: Abstract Neural Models

Directory of Open Access Journals (Sweden)

Johnson, Melissa G.

2018-02-01

Full Text Available Neurons are complex cells that require a lot of time and resources to model completely. In spiking neural networks (SNN though, not all that complexity is required. Therefore simple, abstract models are often used. These models save time, use less computer resources, and are easier to understand. This tutorial presents two such models: Izhikevich's model, which is biologically realistic in the resulting spike trains but not in the parameters, and the Leaky Integrate and Fire (LIF model which is not biologically realistic but does quickly and easily integrate input to produce spikes. Izhikevich's model is based on Hodgkin-Huxley's model but simplified such that it uses only two differentiation equations and four parameters to produce various realistic spike patterns. LIF is based on a standard electrical circuit and contains one equation. Either of these two models, or any of the many other models in literature can be used in a SNN. Choosing a neural model is an important task that depends on the goal of the research and the resources available. Once a model is chosen, network decisions such as connectivity, delay, and sparseness, need to be made. Understanding neural models and how they are incorporated into the network is the first step in creating a SNN.

Knowledge acquisition for temporal abstraction.

Science.gov (United States)

Stein, A; Musen, M A; Shahar, Y

1996-01-01

Temporal abstraction is the task of detecting relevant patterns in data over time. The knowledge-based temporal-abstraction method uses knowledge about a clinical domain's contexts, external events, and parameters to create meaningful interval-based abstractions from raw time-stamped clinical data. In this paper, we describe the acquisition and maintenance of domain-specific temporal-abstraction knowledge. Using the PROTEGE-II framework, we have designed a graphical tool for acquiring temporal knowledge directly from expert physicians, maintaining the knowledge in a sharable form, and converting the knowledge into a suitable format for use by an appropriate problem-solving method. In initial tests, the tool offered significant gains in our ability to rapidly acquire temporal knowledge and to use that knowledge to perform automated temporal reasoning.

SparkText: Biomedical Text Mining on Big Data Framework

Science.gov (United States)

He, Karen Y.; Wang, Kai

2016-01-01

Background Many new biomedical research articles are published every day, accumulating rich information, such as genetic variants, genes, diseases, and treatments. Rapid yet accurate text mining on large-scale scientific literature can discover novel knowledge to better understand human diseases and to improve the quality of disease diagnosis, prevention, and treatment. Results In this study, we designed and developed an efficient text mining framework called SparkText on a Big Data infrastructure, which is composed of Apache Spark data streaming and machine learning methods, combined with a Cassandra NoSQL database. To demonstrate its performance for classifying cancer types, we extracted information (e.g., breast, prostate, and lung cancers) from tens of thousands of articles downloaded from PubMed, and then employed Naïve Bayes, Support Vector Machine (SVM), and Logistic Regression to build prediction models to mine the articles. The accuracy of predicting a cancer type by SVM using the 29,437 full-text articles was 93.81%. While competing text-mining tools took more than 11 hours, SparkText mined the dataset in approximately 6 minutes. Conclusions This study demonstrates the potential for mining large-scale scientific articles on a Big Data infrastructure, with real-time update from new articles published daily. SparkText can be extended to other areas of biomedical research. PMID:27685652

Text summarization as a decision support aid

Directory of Open Access Journals (Sweden)

Workman T

2012-05-01

Full Text Available Abstract Background PubMed data potentially can provide decision support information, but PubMed was not exclusively designed to be a point-of-care tool. Natural language processing applications that summarize PubMed citations hold promise for extracting decision support information. The objective of this study was to evaluate the efficiency of a text summarization application called Semantic MEDLINE, enhanced with a novel dynamic summarization method, in identifying decision support data. Methods We downloaded PubMed citations addressing the prevention and drug treatment of four disease topics. We then processed the citations with Semantic MEDLINE, enhanced with the dynamic summarization method. We also processed the citations with a conventional summarization method, as well as with a baseline procedure. We evaluated the results using clinician-vetted reference standards built from recommendations in a commercial decision support product, DynaMed. Results For the drug treatment data, Semantic MEDLINE enhanced with dynamic summarization achieved average recall and precision scores of 0.848 and 0.377, while conventional summarization produced 0.583 average recall and 0.712 average precision, and the baseline method yielded average recall and precision values of 0.252 and 0.277. For the prevention data, Semantic MEDLINE enhanced with dynamic summarization achieved average recall and precision scores of 0.655 and 0.329. The baseline technique resulted in recall and precision scores of 0.269 and 0.247. No conventional Semantic MEDLINE method accommodating summarization for prevention exists. Conclusion Semantic MEDLINE with dynamic summarization outperformed conventional summarization in terms of recall, and outperformed the baseline method in both recall and precision. This new approach to text summarization demonstrates potential in identifying decision support data for multiple needs.

Nuclear code abstracts (1975 edition)

International Nuclear Information System (INIS)

Akanuma, Makoto; Hirakawa, Takashi

1976-02-01

Nuclear Code Abstracts is compiled in the Nuclear Code Committee to exchange information of the nuclear code developments among members of the committee. Enlarging the collection, the present one includes nuclear code abstracts obtained in 1975 through liaison officers of the organizations in Japan participating in the Nuclear Energy Agency's Computer Program Library at Ispra, Italy. The classification of nuclear codes and the format of code abstracts are the same as those in the library. (auth.)

Jointly creating digital abstracts: dealing with synonymy and polysemy

Directory of Open Access Journals (Sweden)

Vercruysse Steven

2012-10-01

Full Text Available Abstract Background Ideally each Life Science article should get a ‘structured digital abstract’. This is a structured summary of the paper’s findings that is both human-verified and machine-readable. But articles can contain a large variety of information types and contextual details that all need to be reconciled with appropriate names, terms and identifiers, which poses a challenge to any curator. Current approaches mostly use tagging or limited entry-forms for semantic encoding. Findings We implemented a ‘controlled language’ as a more expressive representation method. We studied how usable this format was for wet-lab-biologists that volunteered as curators. We assessed some issues that arise with the usability of ontologies and other controlled vocabularies, for the encoding of structured information by ‘untrained’ curators. We take a user-oriented viewpoint, and make recommendations that may prove useful for creating a better curation environment: one that can engage a large community of volunteer curators. Conclusions Entering information in a biocuration environment could improve in expressiveness and user-friendliness, if curators would be enabled to use synonymous and polysemous terms literally, whereby each term stays linked to an identifier.

Comparison of the Gini and Zenga Indexes using Some Theoretical Income Distributions Abstract

Directory of Open Access Journals (Sweden)

Katarzyna Ostasiewicz

2013-01-01

Full Text Available The most common measure of inequality used in scientific research is the Gini index. In 2007, Zenga proposed a new index of inequality that has all the appropriate properties of an measure of equality. In this paper, we compared the Gini and Zenga indexes, calculating these quantities for the few distributions frequently used for approximating distributions of income, that is, the lognormal, gamma, inverse Gauss, Weibull and Burr distributions. Within this limited examination, we have observed three main differences. First, the Zenga index increases more rapidly for low values of the variation and decreases more slowly when the variation approaches intermediate values from above. Second, the Zenga index seems to be better predicted by the variation. Third, although the Zenga index is always higher than the Gini one, the ordering of some pairs of cases may be inverted. (original abstract

Abstract Interpretation and Attribute Gramars

DEFF Research Database (Denmark)

Rosendahl, Mads

The objective of this thesis is to explore the connections between abstract interpretation and attribute grammars as frameworks in program analysis. Abstract interpretation is a semantics-based program analysis method. A large class of data flow analysis problems can be expressed as non-standard ...... is presented in the thesis. Methods from abstract interpretation can also be used in correctness proofs of attribute grammars. This proof technique introduces a new class of attribute grammars based on domain theory. This method is illustrated with examples....

Figure-associated text summarization and evaluation.

Directory of Open Access Journals (Sweden)

Balaji Polepalli Ramesh

Full Text Available Biomedical literature incorporates millions of figures, which are a rich and important knowledge resource for biomedical researchers. Scientists need access to the figures and the knowledge they represent in order to validate research findings and to generate new hypotheses. By themselves, these figures are nearly always incomprehensible to both humans and machines and their associated texts are therefore essential for full comprehension. The associated text of a figure, however, is scattered throughout its full-text article and contains redundant information content. In this paper, we report the continued development and evaluation of several figure summarization systems, the FigSum+ systems, that automatically identify associated texts, remove redundant information, and generate a text summary for every figure in an article. Using a set of 94 annotated figures selected from 19 different journals, we conducted an intrinsic evaluation of FigSum+. We evaluate the performance by precision, recall, F1, and ROUGE scores. The best FigSum+ system is based on an unsupervised method, achieving F1 score of 0.66 and ROUGE-1 score of 0.97. The annotated data is available at figshare.com (http://figshare.com/articles/Figure_Associated_Text_Summarization_and_Evaluation/858903.

An automatic method to generate domain-specific investigator networks using PubMed abstracts

Directory of Open Access Journals (Sweden)

Gwinn Marta

2007-06-01

Full Text Available Abstract Background Collaboration among investigators has become critical to scientific research. This includes ad hoc collaboration established through personal contacts as well as formal consortia established by funding agencies. Continued growth in online resources for scientific research and communication has promoted the development of highly networked research communities. Extending these networks globally requires identifying additional investigators in a given domain, profiling their research interests, and collecting current contact information. We present a novel strategy for building investigator networks dynamically and producing detailed investigator profiles using data available in PubMed abstracts. Results We developed a novel strategy to obtain detailed investigator information by automatically parsing the affiliation string in PubMed records. We illustrated the results by using a published literature database in human genome epidemiology (HuGE Pub Lit as a test case. Our parsing strategy extracted country information from 92.1% of the affiliation strings in a random sample of PubMed records and in 97.0% of HuGE records, with accuracies of 94.0% and 91.0%, respectively. Institution information was parsed from 91.3% of the general PubMed records (accuracy 86.8% and from 94.2% of HuGE PubMed records (accuracy 87.0. We demonstrated the application of our approach to dynamic creation of investigator networks by creating a prototype information system containing a large database of PubMed abstracts relevant to human genome epidemiology (HuGE Pub Lit, indexed using PubMed medical subject headings converted to Unified Medical Language System concepts. Our method was able to identify 70–90% of the investigators/collaborators in three different human genetics fields; it also successfully identified 9 of 10 genetics investigators within the PREBIC network, an existing preterm birth research network. Conclusion We successfully created a

Efficient abstraction selection in reinforcement learning

NARCIS (Netherlands)

Seijen, H. van; Whiteson, S.; Kester, L.

2013-01-01

This paper introduces a novel approach for abstraction selection in reinforcement learning problems modelled as factored Markov decision processes (MDPs), for which a state is described via a set of state components. In abstraction selection, an agent must choose an abstraction from a set of

Indico CONFERENCE: Define the Call for Abstracts