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Sample records for a2 quarantine pathogen

  1. Biological and epidemiological aspects of the quarantine pathogen Phytophthora ramorum

    Directory of Open Access Journals (Sweden)

    Beatrice Ginetti

    2015-12-01

    Full Text Available Phytophthora ramorum is a quarantine pathogen that causes leaf blight and shoot dieback of the crown, bark cankers and death on a number of both ornamental and forest trees, especially in North America and northern Europe, where it has produced severe outbreaks.In Italy it was first reported in 2002, on Rhodondendron yakushimanum in a Piedmont nursery; after that it seemed to have disappeared, only to re-emerge in 2013 when numerous isolates were detected on batches of Viburnum tinus plants growing in some nurseries in the Pistoia area (Tuscany, which is an important district in the trade of nursery plants world-wide. This work reports on a number of laboratory tests that were carried out on isolates from infected plant samples. The micromorphological and macromorphological characteristics of the pathogen growing on carrot agar (CA, corn meal agar (CMA, malt extract agar (MEA potato dextrose agar, and V8 agar with added PARPNH (see text were determined, as was the growth rate at 10º, 15º, 20º, 25°, 30º, 32º and 35ºC. Molecular analysis was employed to identify the isolates more precisely. Inoculation trials under the bark were also carried out to ascertain the isolate virulence and the Koch’s Postulates.The Plant Protection Service of the Tuscan Region (SFR, Servizio Fitosanitario Regionale was alerted as soon as the pathogen infection was detected and it took the prescribed steps to eradicate the infection in the field and prevent the recurrence of an epidemic.

  2. Genome Sequence of Phytophthora fragariae var. fragariae, a Quarantine Plant-Pathogenic Fungus

    OpenAIRE

    Gao, Ruifang; Cheng, Yinghui; Wang, Ying; Wang, Ying; Guo, Liyun; Zhang, Guiming

    2015-01-01

    Phytophthora fragariae var. fragariae is a serious plant-pathogenic fungus causing red core disease in strawberries, resulting in a larger number of fruit produced, and the fungus has been regulated as a quarantine pest of many countries and regions. Here, we announce the genome sequence of P.?fragariae var. fragariae, and this information might provide insight into the mechanism of pathogenicity and host specificity of this pathogen, as well as help us further identify targets for fungicides.

  3. Genome Sequence of Phytophthora fragariae var. fragariae, a Quarantine Plant-Pathogenic Fungus.

    Science.gov (United States)

    Gao, Ruifang; Cheng, Yinghui; Wang, Ying; Wang, Ying; Guo, Liyun; Zhang, Guiming

    2015-03-26

    Phytophthora fragariae var. fragariae is a serious plant-pathogenic fungus causing red core disease in strawberries, resulting in a larger number of fruit produced, and the fungus has been regulated as a quarantine pest of many countries and regions. Here, we announce the genome sequence of P. fragariae var. fragariae, and this information might provide insight into the mechanism of pathogenicity and host specificity of this pathogen, as well as help us further identify targets for fungicides. Copyright © 2015 Gao et al.

  4. Draft genome sequence of Karnal bunt pathogen (Tilletia indica of wheat provides insights into the pathogenic mechanisms of quarantined fungus.

    Directory of Open Access Journals (Sweden)

    Anil Kumar

    Full Text Available Karnal bunt disease in wheat is caused by hemibiotrophic fungus, Tilletia indica that has been placed as quarantine pest in more than 70 countries. Despite its economic importance, little knowledge about the molecular components of fungal pathogenesis is known. In this study, first time the genome sequence of T. indica has been deciphered for unraveling the effectors' functions of molecular pathogenesis of Karnal bunt disease. The T. indica genome was sequenced employing hybrid approach of PacBio Single Molecule Real Time (SMRT and Illumina HiSEQ 2000 sequencing platforms. The genome was assembled into 10,957 contigs (N50 contig length 3 kb with total size of 26.7 Mb and GC content of 53.99%. The number of predicted putative genes were 11,535, which were annotated with Gene Ontology databases. Functional annotation of Karnal bunt pathogen genome and classification of identified effectors into protein families revealed interesting functions related to pathogenesis. Search for effectors' genes using pathogen host interaction database identified 135 genes. The T. indica genome sequence and putative genes involved in molecular pathogenesis would further help in devising novel and effective disease management strategies including development of resistant wheat genotypes, novel biomarkers for pathogen detection and new targets for fungicide development.

  5. Optimization of a real-time PCR assay for the detection of the quarantine pathogen Melampsora medusae f. sp. deltoidae.

    Science.gov (United States)

    Boutigny, Anne-Laure; Guinet, Cécile; Vialle, Agathe; Hamelin, Richard C; Andrieux, Axelle; Frey, Pascal; Husson, Claude; Ioos, Renaud

    2013-06-01

    Melampsora medusae (Mm), one of the causal agents of poplar rust, is classified as an A2 quarantine pest for European Plant Protection Organization (EPPO) and its presence in Europe is strictly controlled. Two formae speciales have been described within Mm, Melampsora medusae f. sp. deltoidae (Mmd), and Melampsora medusae f. sp. tremuloidae (Mmt) on the basis of their pathogenicity on Populus species from the section Aigeiros (e.g. Populus deltoides) or Populus (e.g. Populus tremuloides), respectively. In this study, a real-time polymerase chain reaction (PCR) assay was developed allowing the detection of Mmd, the forma specialis that is economically harmful. A set of primers and hydrolysis probe were designed based on sequence polymorphisms in the large ribosomal RNA subunit (28S). The real-time PCR assay was optimized and performance criteria of the detection method, i.e. sensitivity, specificity, repeatability, reproducibility, and robustness, were assessed. The real-time PCR method was highly specific and sensitive and allowed the detection of one single urediniospore of Mmd in a mixture of 2 mg of urediniospores of other Melampsora species. This test offers improved specificity over currently existing conventional PCR tests and can be used for specific surveys in European nurseries and phytosanitary controls, in order to avoid introduction and spread of this pathogen in Europe. Copyright © 2013 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

  6. Ionizing radiation quarantine treatments

    OpenAIRE

    Hallman, Guy J.

    1998-01-01

    Irradiation is a viable quarantine disinfestation treatment which has been studied for 40 years although it has received very little commercial use. Two principal obstacles to commercial application, 1) the fact that insects are not killed immediately, and 2) consumer opposition to irradiation, have been allayed to some extent, but the remaining impediment to large-scale commercial use is development of approved protocols by government regulatory agencies in importing countries. The United St...

  7. Australian agricultural quarantine - imports and exports

    International Nuclear Information System (INIS)

    Turpin, J.W.; Read, B.J.; Pinson, R.S.; Higgs, G.M.

    1985-01-01

    Agricultural quarantine is administered by Government to protect all facets of agriculture and the environment from unwanted pests and diseases of animals and plants. Ionising energy would appear to have an excellent future as a quarantine treatment

  8. The borderline of 'empire': Japanese maritime quarantine in Busan c.1876-1910.

    Science.gov (United States)

    Kim, Jeong-Ran

    2013-04-01

    This paper seeks to balance the regional and thematic focus of cholera historiography by examining maritime quarantine in Busan, as it was devised and implemented by Japanese officials and doctors during the pre-colonial period. It also places the relationship between Korea and Japan in the context of relations with China, Russia and Britain. This paper shows that quarantine measures in Busan and other Korean ports reflected the rise of Japanese imperial power and the increasing desire on the part of the Japanese to establish an effective borderline for their regional empire. From 1879 Japan began to impose maritime quarantine in Busan, where Japanese influence was very strong even before the colonial period, though at that time Japan was unable to perform quarantine in its own ports independently due to the objections of Western powers, particularly Britain. Victories in the Sino-Japanese and Russo-Japanese wars established Japan as a regional power on equal terms with the West, and as the dominant power in Korea and Eastern Asia. With the acquisition of the right to impose quarantine in its homeland, Japan strengthened and extended the range of quarantine from Japan to Korea, China and Russia. Now quarantine screened Japan from potentially harmful agents – pathogenic and political – and its functions diversified further as modernisation and imperial expansion gathered pace. The reliance which Japan placed upon quarantine in maintaining its empire explains why it was increasingly out of step with other powers regarding international sanitary precautions. The Japanese maritime quarantine in Busan during this period therefore shows many aspects of Japan’s ‘national empire’.

  9. An overview of quarantine for fruit flies

    International Nuclear Information System (INIS)

    Frampton, E.R.

    2000-01-01

    What is meant by 'quarantine for fruit flies'? The Collins dictionary describes 'quarantine' as a period of isolation or detention, especially of persons or animals arriving from abroad, to prevent the spread of disease. In providing an overview of quarantine for fruit flies, a broader definition needs to be applied, that is, the combination of activities required to maintain the fruit fly status of a particular geographical area - perhaps better referred to as a 'quarantine system'. Familiarity with New Zealand's quarantine system for fruit flies (Diptera: Tephritidae) provides a useful basis for subsequent comparison with other countries' systems where some fruit fly species may be present. But, why have 'quarantine for fruit flies'? The multivoltine life history of many species. combined with a relatively long-lived adult stage and highly fecund females, results in a high potential for rapid population increase (Bateman 1979, Fletcher 1987). These factors and the close association of fruit flies with harvested fruit or vegetables explain the high quarantine profile of these insects. However, there is no international requirement for a country to have a quarantine system and unless there are natural quarantine barriers (e.g., mountain range, oceans, deserts) that can be utilised, effective quarantine by an individual country may be an impossible task. The implementation of a successful quarantine system is very expensive and therefore, it would be expected that any benefits attained outweigh the costs (Ivess 1998). Ivess (1998) listed the following benefits from the implementation of an effective quarantine system: minimising production costs (including post harvest treatments), maintaining competitive advantages for market access due to the ongoing freedom from particular pests of quarantine significance, an environment free from many pests harmful to plant health, the maintenance of ecosystems

  10. Draft Genome Sequence of Blood Disease Bacterium A2 HR-MARDI, a Pathogen Causing Banana Bacterial Wilt.

    Science.gov (United States)

    Badrun, Rafidah; Abu Bakar, Norliza; Laboh, Rozeita; Redzuan, Rohaiza; Bala Jaganath, Indu

    2017-06-01

    Blood disease bacterium A2 HR-MARDI was isolated from banana plants infected with banana blood disease and which were planted in Kuala Kangsar, Malaysia. Here, we report a draft genome sequence of blood disease bacterium A2 HR-MARDI, which could provide important information on the virulence mechanism of this pathogen. Copyright © 2017 Badrun et al.

  11. Immunogenicity of phospholipase A2 toxins and their role in Streptococcus equi pathogenicity.

    Science.gov (United States)

    López-Álvarez, M R; Salze, M; Cenier, A; Robinson, C; Paillot, R; Waller, A S

    2017-05-01

    Streptococcus equi subsp. equi (S. equi) is the causative agent of strangles, one of the most frequently diagnosed infectious diseases of horses worldwide. Phospholipase A 2 toxins (PLA 2 ) cleave phospholipid molecules at position sn-2 contributing to the production of leukotrienes that are important inflammatory mediators. Two homologous phospholipases, SlaA and SlaB are encoded by the S. equi genome suggesting that PLA 2 toxins may contribute to its pathogenicity. Here we report the immunogenicity and role of PLA 2 toxins during natural and experimental infection of horses with S. equi. The levels of anti-PLA 2 specific antibodies in serum from horses naturally exposed to S. equi or without exposure were measured by indirect ELISA. Furthermore, the importance of PLA 2 was determined during experimental infection of Welsh Mountain ponies with a mutant strain of S. equi lacking slaA and slaB. Our results show that PLA 2 toxins are immunogenic, which supports their production during natural S. equi infection, but that these toxins are not essential for the development of strangles in a susceptible natural host. Copyright © 2017 Elsevier B.V. All rights reserved.

  12. Q-bank, a database with information for identification of plant quarantine plant pest and diseases

    NARCIS (Netherlands)

    Bonants, P.J.M.; Edema, M.J.; Robert, V.

    2013-01-01

    This paper describes the database Q-bank (www.q-bank.eu). This freely accessible database contains data on plant pathogenic quarantine organisms to allow fast and reliable identification. Development of accurate identification tools for plant pests is vital to support European Plant Health Policies.

  13. 9 CFR 72.5 - Area quarantined in Texas.

    Science.gov (United States)

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Area quarantined in Texas. 72.5... AGRICULTURE INTERSTATE TRANSPORTATION OF ANIMALS (INCLUDING POULTRY) AND ANIMAL PRODUCTS TEXAS (SPLENETIC) FEVER IN CATTLE § 72.5 Area quarantined in Texas. The area quarantined in Texas is the quarantined area...

  14. Food irradiation as a quarantine treatment

    International Nuclear Information System (INIS)

    Ignatowicz, S.

    1998-01-01

    Because of multiplicity of invertebrate pests of fresh and durable agricultural products which are treaded internationally there are frequent instances were products are unacceptable without an approved prior disinfestation treatment. The majority of these pests are regulated by quarantine inspections at the ports of exit and entry. Where there is risk of rejection of products if quarantine pests are found at inspection it is frequently prudent to apply a disinfestation treatment. Control of these pests in agriculture produce by fumigation is no longer desirable from the points of human health and global environment. Irradiation could be feasible and practical alternative with a broad applicability to commodities and pests. Quarantine disinfestation of most agricultural products seems to be achievable at the recommended generic dose of 300 Gy. Because irradiation applied at doses ranging about 300 Gy does not cause immediate mortality of all insects, mites or nematodes, live pests could be present after treatment of agricultural produce intended for international trade. In such case a marker of irradiation that is easily applied may be very useful in allaying concerns of some quarantine inspectors that inevitably occur when a living insect of quarantine importance is found in a shipment. (author)

  15. Quarantine stations at ports of entry: protecting the public's health

    National Research Council Canada - National Science Library

    Sivitz, Laura; Stratton, Kathleen R; Benjamin, Georges

    ...) places small groups of staff at major U.S. airports. These staff, their offices, and their patient isolation rooms constitute quarantine stations, which are run by CDC's Division of Global Migration and Quarantine (DGMQ...

  16. 7 CFR 301.50-3 - Quarantined areas.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Quarantined areas. 301.50-3 Section 301.50-3 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Pine Shoot Beetle § 301.50-3 Quarantined areas. (a) Except as otherwise provided in...

  17. 7 CFR 301.51-3 - Quarantined areas.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Quarantined areas. 301.51-3 Section 301.51-3 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Asian Longhorned Beetle § 301.51-3 Quarantined areas. (a) Except as otherwise provided in...

  18. Novel Pathogenic Mechanism Suggested by Ex Vivo Analysis of MCT8 (SLC16A2) Mutations

    NARCIS (Netherlands)

    Visser, W. Edward; Jansen, Jurgen; Friesema, Edith C. H.; Kester, Monique H. A.; Mancilla, Edna; Lundgren, Johan; van der Knaap, Marjo S.; Lunsing, Roelineke J.; Brouwar, Oebele F.; Visser, Theo J.

    Monocarboxylate transporter 8 (MCT8; approved symbol SLC16A2) facilitates cellular uptake and efflux of 3,3',5-triiodothyronine (T3). Mutations in MCT8 arc associated with severe psychomotor retardation, high serum T3 and low 3,3',5'-triiodothyronine (rT3) levels. Here we report three novel MCT8

  19. 9 CFR 93.308 - Quarantine requirements.

    Science.gov (United States)

    2010-01-01

    ... available; however, copies of “Protocol for the Complement-Fixation Test for Equine Piroplasmosis” and... arrange for a supply of water adequate to clean and disinfect the facility. (B) All feed and bedding must... attendants for the care and feeding of horses while in the quarantine facility. (C) Persons working in the...

  20. 9 CFR 93.106 - Quarantine requirements.

    Science.gov (United States)

    2010-01-01

    ... the facility in clean and sanitary condition, including insect and pest control equipment; (K) Have a...) Control of surface drainage onto or from the facility to prevent any disease agent from entering or... poultry disease agent from the facility. (ii) Handling of the birds in quarantine. The birds shall be kept...

  1. Human quarantine: Toward reducing infectious pressure on chimpanzees at the Taï Chimpanzee Project, Côte d'Ivoire.

    Science.gov (United States)

    Grützmacher, Kim; Keil, Verena; Leinert, Vera; Leguillon, Floraine; Henlin, Arthur; Couacy-Hymann, Emmanuel; Köndgen, Sophie; Lang, Alexander; Deschner, Tobias; Wittig, Roman M; Leendertz, Fabian H

    2018-01-01

    Due to their genetic relatedness, great apes are highly susceptible to common human respiratory pathogens. Although most respiratory pathogens, such as human respiratory syncytial virus (HRSV) and human metapneumovirus (HMPV), rarely cause severe disease in healthy human adults, they are associated with considerable morbidity and mortality in wild great apes habituated to humans for research or tourism. To prevent pathogen transmission, most great ape projects have established a set of hygiene measures ranging from keeping a specific distance, to the use of surgical masks and establishment of quarantines. This study investigates the incidence of respiratory symptoms and human respiratory viruses in humans at a human-great ape interface, the Taï Chimpanzee Project (TCP) in Côte d'Ivoire, and consequently, the effectiveness of a 5-day quarantine designed to reduce the risk of potential exposure to human respiratory pathogens. To assess the impact of quarantine as a preventative measure, we monitored the quarantine process and tested 262 throat swabs for respiratory viruses, collected during quarantine over a period of 1 year. Although only 1 subject tested positive for a respiratory virus (HRSV), 17 subjects developed symptoms of infection while in quarantine and were subsequently kept from approaching the chimpanzees, preventing potential exposure in 18 cases. Our results suggest that quarantine-in combination with monitoring for symptoms-is effective in reducing the risk of potential pathogen exposure. This research contributes to our understanding of how endangered great apes can be protected from human-borne infectious disease. © 2017 Wiley Periodicals, Inc.

  2. Antimicrobial activity of apitoxin, melittin and phospholipase A2 of honey bee (Apis mellifera venom against oral pathogens

    Directory of Open Access Journals (Sweden)

    Luís F. Leandro

    2015-03-01

    Full Text Available In this work, we used the Minimum Inhibitory Concentration (MIC technique to evaluate the antibacterial potential of the apitoxin produced by Apis mellifera bees against the causative agents of tooth decay. Apitoxin was assayed in naturaand in the commercially available form. The antibacterial actions of the main components of this apitoxin, phospholipase A2, and melittin were also assessed, alone and in combination. The following bacteria were tested: Streptococcus salivarius, S. sobrinus, S. mutans, S. mitis, S. sanguinis, Lactobacillus casei, and Enterococcus faecalis. The MIC results obtained for the commercially available apitoxin and for the apitoxin in natura were close and lay between 20 and 40µg / mL, which indicated good antibacterial activity. Melittin was the most active component in apitoxin; it displayed very promising MIC values, from 4 to 40µg / mL. Phospholipase A2 presented MIC values higher than 400µg / mL. Association of mellitin with phospholipase A2 yielded MIC values ranging between 6 and 80µg / mL. Considering that tooth decay affects people's health, apitoxin and its component melittin have potential application against oral pathogens.

  3. 7 CFR 319.15 - Notice of quarantine.

    Science.gov (United States)

    2010-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Sugarcane § 319.15 Notice of quarantine. (a) The importation into the United States of sugarcane and its related products, including cuttings, canes, leaves, and bagasse, from all foreign countries and localities is prohibited, except for...

  4. 7 CFR 301.32-3 - Quarantined areas.

    Science.gov (United States)

    2010-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Fruit Flies § 301.32-3 Quarantined areas... which a fruit fly population subject to the regulations in this subpart has been found by an inspector, or in which the Administrator has reason to believe that a fruit fly population is present, or that...

  5. 9 CFR 93.309 - Horse quarantine facilities; payment information.

    Science.gov (United States)

    2010-01-01

    ...; payment information. (a) Privately operated quarantine facilities. The importer, or his or her agent, of... and sanitary to the satisfaction of the inspector assigned to supervise the quarantine. If for any... accordance with the procedure described in paragraph (b) of this section. The importer, or his or her agent...

  6. 9 CFR 93.511 - Swine quarantine facilities.

    Science.gov (United States)

    2010-01-01

    ...) Privately operated quarantine facilities. The importer, or his or her agent, of swine subject to quarantine... of any import permit. The facilities occupied by swine should be kept clean and sanitary to the... described in paragraph (b) of this section. The importer, or his or her agent, shall request in writing such...

  7. 9 CFR 93.210 - Poultry quarantine facilities.

    Science.gov (United States)

    2010-01-01

    ...) Privately operated quarantine facilities. The importer, or his or her agent, of poultry subject to... sanitary to the satisfaction of the inspector assigned to supervise the quarantine. If for any cause the... accordance with the procedure described in paragraph (b) of this section. The importer, or his or her agent...

  8. Modelling the effects of treatment and quarantine on measles

    Science.gov (United States)

    Beay, Lazarus Kalvein

    2018-03-01

    Treatment and quarantine are efforts to cure as well as to overcome the spread of diseases including measles. The spread of measles can be expressed by mathematical modelling in the form of nonlinear dynamical systems. In this study was conducted on the spread of measles by considering the effect of treatment and quarantine on the infected individuals. By using the basic reproduction number of the model, can be analyzed the effects of treatment and quarantine to reduce the spread of measles. Basic reproduction number of models is monotonically descreasing as treatment and quarantine increasing. Numerical simulations conducted on the analysis of the results. The results showed that treatment and quarantine was given to infected individuals who were infectious has a major influence to eliminate measles from the system.

  9. Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context.

    Science.gov (United States)

    Candresse, Thierry; Filloux, Denis; Muhire, Brejnev; Julian, Charlotte; Galzi, Serge; Fort, Guillaume; Bernardo, Pauline; Daugrois, Jean-Heindrich; Fernandez, Emmanuel; Martin, Darren P; Varsani, Arvind; Roumagnac, Philippe

    2014-01-01

    Comprehensive inventories of plant viral diversity are essential for effective quarantine and sanitation efforts. The safety of regulated plant material exchanges presently relies heavily on techniques such as PCR or nucleic acid hybridisation, which are only suited to the detection and characterisation of specific, well characterised pathogens. Here, we demonstrate the utility of sequence-independent next generation sequencing (NGS) of both virus-derived small interfering RNAs (siRNAs) and virion-associated nucleic acids (VANA) for the detailed identification and characterisation of viruses infecting two quarantined sugarcane plants. Both plants originated from Egypt and were known to be infected with Sugarcane streak Egypt Virus (SSEV; Genus Mastrevirus, Family Geminiviridae), but were revealed by the NGS approaches to also be infected by a second highly divergent mastrevirus, here named Sugarcane white streak Virus (SWSV). This novel virus had escaped detection by all routine quarantine detection assays and was found to also be present in sugarcane plants originating from Sudan. Complete SWSV genomes were cloned and sequenced from six plants and all were found to share >91% genome-wide identity. With the exception of two SWSV variants, which potentially express unusually large RepA proteins, the SWSV isolates display genome characteristics very typical to those of all other previously described mastreviruses. An analysis of virus-derived siRNAs for SWSV and SSEV showed them to be strongly influenced by secondary structures within both genomic single stranded DNA and mRNA transcripts. In addition, the distribution of siRNA size frequencies indicates that these mastreviruses are likely subject to both transcriptional and post-transcriptional gene silencing. Our study stresses the potential advantages of NGS-based virus metagenomic screening in a plant quarantine setting and indicates that such techniques could dramatically reduce the numbers of non

  10. Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context.

    Directory of Open Access Journals (Sweden)

    Thierry Candresse

    Full Text Available Comprehensive inventories of plant viral diversity are essential for effective quarantine and sanitation efforts. The safety of regulated plant material exchanges presently relies heavily on techniques such as PCR or nucleic acid hybridisation, which are only suited to the detection and characterisation of specific, well characterised pathogens. Here, we demonstrate the utility of sequence-independent next generation sequencing (NGS of both virus-derived small interfering RNAs (siRNAs and virion-associated nucleic acids (VANA for the detailed identification and characterisation of viruses infecting two quarantined sugarcane plants. Both plants originated from Egypt and were known to be infected with Sugarcane streak Egypt Virus (SSEV; Genus Mastrevirus, Family Geminiviridae, but were revealed by the NGS approaches to also be infected by a second highly divergent mastrevirus, here named Sugarcane white streak Virus (SWSV. This novel virus had escaped detection by all routine quarantine detection assays and was found to also be present in sugarcane plants originating from Sudan. Complete SWSV genomes were cloned and sequenced from six plants and all were found to share >91% genome-wide identity. With the exception of two SWSV variants, which potentially express unusually large RepA proteins, the SWSV isolates display genome characteristics very typical to those of all other previously described mastreviruses. An analysis of virus-derived siRNAs for SWSV and SSEV showed them to be strongly influenced by secondary structures within both genomic single stranded DNA and mRNA transcripts. In addition, the distribution of siRNA size frequencies indicates that these mastreviruses are likely subject to both transcriptional and post-transcriptional gene silencing. Our study stresses the potential advantages of NGS-based virus metagenomic screening in a plant quarantine setting and indicates that such techniques could dramatically reduce the numbers of non

  11. Quarantine, Isolation, and Health Care Workers.

    Science.gov (United States)

    Webb, Adam

    2015-12-01

    Although Ebola virus disease and other hemorrhagic fevers are not generally considered infectious diseases of the nervous system, neurologists may be asked to participate in the management of patients with these and other dangerous communicable illnesses, including possible bioterrorism agents. It is essential for all health professionals to understand the public health, legal, and ethical frameworks behind autonomy-limiting interventions such as quarantine and isolation. Health care professionals represent the front line of defense during public health emergencies. They are often disproportionately affected by the illnesses themselves as well as by the public health interventions intended to prevent spread. The global health crisis caused by the spread of Ebola virus disease has been instructional for examining these ethical issues.

  12. 7 CFR 318.13-1 - Notice of quarantine.

    Science.gov (United States)

    2010-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE STATE OF HAWAII AND TERRITORIES QUARANTINE NOTICES Regulated Articles... prohibit the interstate movement of cut flowers and fruits and vegetables and plants and portions of plants...

  13. 7 CFR 301.38 - Notice of quarantine; restrictions on interstate movement of regulated articles.

    Science.gov (United States)

    2010-01-01

    ... QUARANTINE NOTICES Black Stem Rust § 301.38 Notice of quarantine; restrictions on interstate movement of... prevent the spread of black stem rust. No person shall move interstate any regulated article except in...

  14. 40 CFR 166.32 - Reporting and recordkeeping requirements for specific, quarantine, and public health exemptions.

    Science.gov (United States)

    2010-07-01

    ... requirements for specific, quarantine, and public health exemptions. 166.32 Section 166.32 Protection of... AGENCIES FOR USE OF PESTICIDES UNDER EMERGENCY CONDITIONS Specific, Quarantine, and Public Health Exemptions § 166.32 Reporting and recordkeeping requirements for specific, quarantine, and public health...

  15. 75 FR 41073 - South American Cactus Moth Regulations; Quarantined Areas

    Science.gov (United States)

    2010-07-15

    ...) that is indigenous to Argentina, southern Brazil, Paraguay, and Uruguay. It is a serious quarantine... analyzed the potential economic effects of this action on small entities. South American cactus moth is a... Health Inspection Service has determined that this action will not have a significant economic impact on...

  16. The roles of veterinary quarantine services in monitoring the ...

    African Journals Online (AJOL)

    A total of 3,065,599 animals were imported through the recognised INVCP between 1986 and 1997, while 10,781 other animals and 586, tonnes of hides and skins were exported. The illegal entry points were estimated at 3,445 or one per each 1.13km border. The levels of functional efficiency of the quarantine services ...

  17. 76 FR 63891 - Foreign Quarantine; Etiological Agents, Hosts, and Vectors

    Science.gov (United States)

    2011-10-14

    ... Foreign Quarantine; Etiological Agents, Hosts, and Vectors AGENCY: Centers for Disease Control and... cover the importation of etiological agents and the hosts and vectors of human disease. The changes are... for importation of etiological agents, hosts, and vectors (42 CFR 71.54), requiring persons to obtain...

  18. 9 CFR 73.1b - Quarantine policy.

    Science.gov (United States)

    2010-01-01

    ... INTERSTATE TRANSPORTATION OF ANIMALS (INCLUDING POULTRY) AND ANIMAL PRODUCTS SCABIES IN CATTLE § 73.1b... various areas because of cattle scabies and has issued the regulations in this part governing the... scabies, or mites which are the contagion of said disease and not to quarantine an entire State for cattle...

  19. special article the medico-legal prerequisite for initiating quarantine ...

    African Journals Online (AJOL)

    7. Statement justifying Quarantine Order. 8. Report to appropriate authorities. To hospitals and health posts. It is important for them to train their personnel on pub- lic health legislation affecting their operations in emer- gencies. They should develop templates as those indi- cated to the Ghana Health Service. Study Limitation.

  20. 7 CFR 319.56-1 - Notice of quarantine.

    Science.gov (United States)

    2010-01-01

    ... Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Fruits and Vegetables § 319.56-1 Notice of... is necessary to prohibit the importation into the United States of fruits and vegetables and...

  1. 7 CFR 319.19 - Notice of quarantine.

    Science.gov (United States)

    2010-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Citrus Canker and Other Citrus Diseases... citrus canker disease (Xanthomonas citri (Hasse) Dowson) and other citrus diseases, the importation into the United States of plants or any plant part, except fruit and seeds, of all genera, species, and...

  2. 9 CFR 78.12 - Cattle from quarantined areas.

    Science.gov (United States)

    2010-01-01

    ... Restrictions on Interstate Movement of Cattle Because of Brucellosis § 78.12 Cattle from quarantined areas. Not... cattle. Brucellosis reactor cattle may be moved interstate in accordance with § 78.7. (c) Brucellosis exposed cattle. Brucellosis exposed cattle may be moved interstate in accordance with § 78.8(a) or (b). (d...

  3. 7 CFR 301.75-4 - Quarantined areas.

    Science.gov (United States)

    2010-01-01

    ... or lawn care services on any premises containing regulated plants or regulated trees, must be treated...) Grass, tree, and plant clippings may be moved intrastate from the quarantined area for disposal in a...)(1) of this section, (B) The grass, tree, or plant clippings are completely covered during the...

  4. 7 CFR 319.69 - Notice of quarantine.

    Science.gov (United States)

    2010-01-01

    ... dried or cured masses of grasses, weeds, and herbaceous plants; from all countries. (4) Soil containing... Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION... of quarantine. (a) The following plants and plant products, when used as packing materials, are...

  5. Encouraging compliance with quarantine: a proposal to provide job security and income replacement.

    Science.gov (United States)

    Rothstein, Mark A; Talbott, Meghan K

    2007-04-01

    A human influenza virus is considered the most likely source of a pandemic in the near future. Quarantine has the potential to be the most effective measure for limiting the spread of infection. The major obstacles to compliance for those asked to enter quarantine include loss of income during quarantine and loss of employment after quarantine. We discuss current antidiscrimination and compensation laws, as well as options to expand coverage for quarantined individuals to encourage public cooperation by guaranteeing job security and providing income replacement.

  6. Loop-mediated Isothermal Amplification Assay to Rapidly Detect Wheat Streak Mosaic Virus in Quarantined Plants

    Directory of Open Access Journals (Sweden)

    Siwon Lee

    2015-12-01

    Full Text Available We developed a loop-mediated isothermal amplification (LAMP method to rapidly diagnose Wheat streak mosaic virus (WSMV during quarantine inspections of imported wheat, corn, oats, and millet. The LAMP method was developed as a plant quarantine inspection method for the first time, and its simplicity, quickness, specificity and sensitivity were verified compared to current reverse transcription-polymerase chain reaction (RT-PCR and nested PCR quarantine methods. We were able to quickly screen for WSMV at quarantine sites with many test samples; thus, this method is expected to contribute to plant quarantine inspections.

  7. Confirmation of the pathogenicity of a mutation p.G337C in the COL1A2 gene associated with osteogenesis imperfecta

    Science.gov (United States)

    Jia, Mingrui; Shi, Ranran; Zhao, Xuli; Fu, Zhijian; Bai, Zhijing; Sun, Tao; Zhao, Xuejun; Wang, Wenbo; Xu, Chao; Yan, Fang

    2017-01-01

    Abstract Mutation analysis as the gold standard is particularly important in diagnosis of osteogenesis imperfecta (OI) and it may be preventable upon early diagnosis. In this study, we aimed to analyze the clinical and genetic materials of an OI pedigree as well as to confirm the deleterious property of the mutation. A pedigree with OI was identified. All family members received careful clinical examinations and blood was drawn for genetic analyses. Genes implicated in OI were screened for mutation. The function and structure of the mutant protein were predicted using bioinformatics analysis. The proband, a 9-month fetus, showed abnormal sonographic images. Disproportionately short and triangular face with blue sclera was noticed at birth. She can barely walk and suffered multiple fractures till 2-year old. Her mother appeared small stature, frequent fractures, blue sclera, and deformity of extremities. A heterozygous missense mutation c.1009G>T (p.G337C) in the COL1A2 gene was identified in her mother and her. Bioinformatics analysis showed p.G337 was well-conserved among multiple species and the mutation probably changed the structure and damaged the function of collagen. We suggest that the mutation p.G337C in the COL1A2 gene is pathogenic for OI by affecting the protein structure and the function of collagen. PMID:28953610

  8. Gamma irradiation as a quarantine treatment against eggs of Citrus black fly (Aleurocanthus woglumi Ashby)

    International Nuclear Information System (INIS)

    Villavicencio, Anna Lucia C.H.; Araujo, Michel M.; Fanaro, Gustavo B.; Costa, Helbert H.S.F.; Silva, Priscila P.V.; Arthur, Valter

    2009-01-01

    The citrus black fruit fly (Aleurocanthus woglumi Ashby) is an important pest of citrus originated in Southeast Asia and its first record in the new world was in Jamaica in 1913. In Brazil, it was detected in 2001 in the state of Para and more recently it was detected in Sao Paulo in 2008. This pest that attacks over 300 species of plants, but its main host are citrus. It is an A2 quarantine pest, because it is not spread throughout the country. The objective of this study was to test doses of 0 (control), 25, 50, 75, 100, 125, 150, 175 and 200 Gy of gamma irradiation for disinfection of eggs of the citrus black fruit fly in leaves of citrus plants. Treatment consisted of 5 replicates with 60 eggs each. Evaluations were performed in the following periods: 1, 3, 5, 7 and 10 days after irradiation. Under the conditions assayed, it could be concluded that a dose of 200 Gy caused 100% mortality of Aleurocanthus woglumi Ashby eggs and could be recommended as a successful quarantine processing against infested plants. (author)

  9. Regulation of use of radiation for quarantine purposes

    International Nuclear Information System (INIS)

    Itepan, Natanael Marcio; Costa, Neivaldo; Furlan, Gilberto Ribeiro; Walder, Julio Marcos Melges

    2011-01-01

    The main aspects of Instruction No. 9 are: a) the nuclear plant that use ionizing radiation as a phyto sanitary treatment for quarantine purposes, must be accredited by the agency of the Agriculture, Livestock and Supply Ministry (MAPA) and the licensing by the Nuclear Energy National Commission (CNEN) and other regulatory bodies, b) control of the applied dose will follow a standard operating procedure should be performed by independent organization, authorized by the Brazilian ONPF (Phyto sanitary Protection National Organization), c) the unit of radiation treatment should ensure traceability and must maintain records of phyto sanitary treatments, d) there should be bilateral work plan between the ONPF of Brazil and other countries for the established radiation treatment protocol. The ONPF of Brazil is the Sanitary Vegetarian Department. Ionizing radiation (cold pasteurization) is shown in an alternative technology to phyto sanitary control for quarantine purposes. (author)

  10. Quarantine disinfestation of tropical fruits: non-chemical options

    International Nuclear Information System (INIS)

    Heather, N.W.

    1994-01-01

    Residue-free methods of disinfestation of tropical fruits against pests of quarantine significance are reviewed. The most important of these pests in fruits to be exported are fruit flies, and the basic methods which are non-chemical and hence meet a residue-free criterion are physical treatments with heat, cold, and irradiation. Worldwide, there are more than 30 species of fruit flies of the family Tephritidae which are of major importance as quarantine pests. There are however a number of pests other than fruit flies which are also of major quarantine importance. Treatments must have very high levels of efficacy to be fully effective, typically in the range of 99.99 percent to 99.996 percent (Probit 8.7-9). At these levels they must not cause unacceptable damage to fruit. Fruits differ in their tolerance of treatments and there is thus scope to choose and manipulate treatments for the best outcomes in economic terms and product quality. Combinations of methods are possible or even a holistic, systems approach in which the contribution of all influences on pest survival in the growing and handling system are taken into account

  11. Quarantine, exports and animal disease in Australia 1901-2010.

    Science.gov (United States)

    Turner, Aj

    2011-09-01

    The Constitution forming the Australian Commonwealth Government on 1 January 1901 provided that animal and animal products imported into and exported from Australia would be under the authority of the national government. By mutual agreement, the Quarantine Act 1908 provided for the states to continue the delivery of services under contract until 1995 when the Commonwealth took back full responsibility for quarantine services. In the 1940s, 50s and 60s there were world pandemics of livestock diseases and Australia ceased the import of many species. By the 1970s, the livestock industries sought relaxation of import restrictions to gain access to diversified genetic stock. By the use of new technologies, many species can now be imported into Australia through tight importation protocols. With the advent of the World Trade Organization and implementation of the Sanitary Phytosanitary Agreement, Australia has developed a risk-based framework to support the development of import conditions for animals and animal products. Australia's 'Acceptable Level of Protection' has been set to provide a low likelihood of disease entry. Being an island continent, Australia can apply strong controls over imports and exports of all commodities and relatively few outbreaks of exotic animal diseases have occurred by breach of quarantine, but the outbreaks of rinderpest in 1923 and equine influenza in 2007 were notable exceptions. © 2011 The Author. Australian Veterinary Journal © 2011 Australian Veterinary Association.

  12. UDP-glucosyltransferase UGT84A2/BRT1 is required for Arabidopsis nonhost resistance to the Asian soybean rust pathogen Phakopsora pachyrhizi.

    Science.gov (United States)

    Langenbach, Caspar; Campe, Ruth; Schaffrath, Ulrich; Goellner, Katharina; Conrath, Uwe

    2013-04-01

    Nonhost resistance (NHR) of plants to fungal pathogens comprises different defense layers. Epidermal penetration resistance of Arabidopsis to Phakopsora pachyrhizi requires functional PEN1, PEN2 and PEN3 genes, whereas post-invasion resistance in the mesophyll depends on the combined functionality of PEN2, PAD4 and SAG101. Other genetic components of Arabidopsis post-invasion mesophyll resistance remain elusive. We performed comparative transcriptional profiling of wild-type, pen2 and pen2 pad4 sag101 mutants after inoculation with P. pachyrhizi to identify a novel trait for mesophyll NHR. Quantitative reverse transcription-polymerase chain reaction (RT-qPCR) analysis and microscopic analysis confirmed the essential role of the candidate gene in mesophyll NHR. UDP-glucosyltransferase UGT84A2/bright trichomes 1 (BRT1) is a novel component of Arabidopsis mesophyll NHR to P. pachyrhizi. BRT1 is a putative cytoplasmic enzyme in phenylpropanoid metabolism. BRT1 is specifically induced in pen2 with post-invasion resistance to P. pachyrhizi. Silencing or mutation of BRT1 increased haustoria formation in pen2 mesophyll. Yet, the brt1 mutation did not affect NHR to P. pachyrhizi in wild-type plants. We assign a novel function to BRT1, which is important for post-invasion NHR of Arabidopsis to P. pachyrhizi. BRT1 might serve to confer durable resistance against P. pachyrhizi to soybean. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

  13. 75 FR 34320 - Asian Longhorned Beetle; Quarantined Area and Regulated Articles

    Science.gov (United States)

    2010-06-17

    .... APHIS-2010-0004] Asian Longhorned Beetle; Quarantined Area and Regulated Articles AGENCY: Animal and... of quarantined areas and restricting the interstate movement of regulated articles from that area. We are also updating the list of regulated articles in order to reflect new information concerning host...

  14. The irradiation as a quarantine method for the treatment of fresh fruits

    International Nuclear Information System (INIS)

    Kaupert, Norma L.

    1999-01-01

    The irradiation is proposed as an alternative to chemical or other physical methods for the quarantine of fresh fruit. The case of the products of the Southern part of Argentina is analysed and the economical and financial parameters for the installation and the operation of an irradiation plant are estimated. The costs are compared to those of a chemical quarantine system. (author)

  15. Appropriateness of Probit-9 in development of quarantine treatments for timber and timber commodities

    Science.gov (United States)

    Marcus Schortemeyer; Ken Thomas; Robert A. Haack; Adnan Uzunovic; Kelli Hoover; Jack A. Simpson; Cheryl A. Grgurinovic

    2011-01-01

    Following the increasing international phasing out of methyl bromide for quarantine purposes, the development of alternative treatments for timber pests becomes imperative. The international accreditation of new quarantine treatments requires verification standards that give confidence in the effectiveness of a treatment. Probit-9 mortality is a standard for treatment...

  16. 7 CFR 301.53-4 - Conditions governing the interstate movement of regulated articles from quarantined areas.

    Science.gov (United States)

    2010-01-01

    ... infestation by emerald ash borer; and (iv) The article has not been combined or commingled with other articles... regulated articles from quarantined areas. 301.53-4 Section 301.53-4 Agriculture Regulations of the... regulated articles from quarantined areas. Regulated articles may be moved interstate from a quarantined...

  17. 7 CFR 301.86-4 - Conditions governing the interstate movement of regulated articles from quarantined areas.

    Science.gov (United States)

    2010-01-01

    ... or unloaded in the quarantined area; and (D) The article has not been combined or commingled with... regulated articles from quarantined areas. 301.86-4 Section 301.86-4 Agriculture Regulations of the... regulated articles from quarantined areas. (a) Any regulated article may be moved interstate from a...

  18. Quarantined Apollo 11 Astronaut Aldrin Speaks With Wife Joan

    Science.gov (United States)

    1969-01-01

    The Apollo 11 mission, the first manned lunar mission, launched from the Kennedy Space Center, Florida via the Marshall Space Flight Center (MSFC) developed Saturn V launch vehicle on July 16, 1969 and safely returned to Earth on July 24, 1969. Aboard the space craft were astronauts Neil A. Armstrong, commander; Michael Collins, Command Module (CM) pilot; and Edwin E. (Buzz) Aldrin Jr., Lunar Module (LM) pilot. The CM, piloted by Michael Collins remained in a parking orbit around the Moon while the LM, named 'Eagle'', carrying astronauts Neil Armstrong and Edwin Aldrin, landed on the Moon. During 2½ hours of surface exploration, the crew collected 47 pounds of lunar surface material for analysis back on Earth. The recovery operation took place in the Pacific Ocean where Navy para-rescue men recovered the capsule housing the 3-man Apollo 11 crew. The crew was airlifted to safety aboard the U.S.S. Hornet, where they were quartered in a Mobile Quarantine Facility (MQF) which served as their home until they reached the NASA Manned Spacecraft Center (MSC) Lunar Receiving Laboratory in Houston, Texas. On arrival at Ellington Air Force base near the MSC, the crew, still under a 21 day quarantine in the MQF, were greeted by their wives. Pictured here is Joan Aldrin, wife of Buzz Aldrin, speaking with her husband via telephone patch.

  19. A new strategy for healthcare-associated pneumonia: a 2-year prospective multicenter cohort study using risk factors for multidrug-resistant pathogens to select initial empiric therapy.

    Science.gov (United States)

    Maruyama, Takaya; Fujisawa, Takao; Okuno, Masataka; Toyoshima, Hirokazu; Tsutsui, Kiyoyuki; Maeda, Hikaru; Yuda, Hisamichi; Yoshida, Masamichi; Kobayashi, Hiroyasu; Taguchi, Osamu; Gabazza, Esteban C; Takei, Yoshiyuki; Miyashita, Naoyuki; Ihara, Toshiaki; Brito, Veronica; Niederman, Michael S

    2013-11-01

    Optimal empiric therapy for hospitalized patients with healthcare-associated pneumonia (HCAP) is uncertain. We prospectively applied a therapeutic algorithm, based on the presence of risk factors for multidrug-resistant (MDR) pathogens in a multicenter cohort study of 445 pneumonia patients, including both community-acquired pneumonia (CAP; n = 124) and HCAP (n = 321). MDR pathogens were more common (15.3% vs 0.8%, P risk factors, one of which was severity of illness (n = 170), vs HCAP patients with 0-1 risk factor (n = 151) had a significantly higher frequency of MDR pathogens (27.1% vs 2%, P risk factor, mortality was lower than with ≥2 MDR risk factors (8.6% vs 18.2%, P = .012). In multivariate analysis, initial treatment failure, but not inappropriate empiric antibiotic therapy, was a mortality risk factor (odds ratio, 72.0). Basing empiric HCAP therapy on its severity and the presence of risk factors for MDR pathogens is a potentially useful approach that achieves good outcomes without excessive use of broad-spectrum antibiotic therapy. Japan Medical Association Center for Clinical Trials, JMA-IIA00054.

  20. The philosophy of quarantine treatment as related to low-dose radiation

    International Nuclear Information System (INIS)

    Ouye, M.T.; Gilmore, J.E.

    1985-01-01

    The purpose for quarantine treatment is to prevent establishment of exotic pest populations from quarantined areas to nonquarantined areas through movement of host commodities. Quarantine treatment schedules approved by the Animal Plant Health Inspection Service (APHIS), U.S. Dept. of Agriculture (USDA), appear in its ''Plant Protection and Quarantine Programs Treatment Manual.'' These treatment schedules were developed through research demonstrating that when followed to the letter, quarantine security or negligible pest risk would be achieved. Negligible pest risk is currently synonymous with probit 9, the level of security at which no more than 3.2 pests per 100,000 treated will survive. Probits are based on mortality; therefore, relatively high dosages will be required and in some instances could damage the commodity at the dosage necessary to kill the pest. If the purpose of quarantine treatment is to prevent perpetuation of the pest species into nonquarantined areas, the criterion should be based on the ability of the treated pests to reproduce. The criteria currently being discussed by APHIS and the Agricultural Research Service are presented. Two key criteria are a redefinition of negligible pest risk and the concept of a two-stage quarantine treatment schedule

  1. Combined Treatments Reduce Chilling Injury and Maintain Fruit Quality in Avocado Fruit during Cold Quarantine.

    Science.gov (United States)

    Sivankalyani, Velu; Feygenberg, Oleg; Maorer, Dalia; Zaaroor, Merav; Fallik, Elazar; Alkan, Noam

    2015-01-01

    Quarantine treatment enables export of avocado fruit (Persea americana) to parts of the world that enforce quarantine against fruit fly. The recommended cold-based quarantine treatment (storage at 1.1°C for 14 days) was studied with two commercial avocado cultivars 'Hass' and 'Ettinger' for 2 years. Chilling injuries (CIs) are prevalent in the avocado fruit after cold-quarantine treatment. Hence, we examined the effect of integrating several treatments: modified atmosphere (MA; fruit covered with perforated polyethylene bags), methyl jasmonate (MJ; fruit dipped in 2.5 μM MJ for Hass or 10 μM MJ for Ettinger for 30 s), 1-methylcyclopropene (1-MCP; fruit treated with 300 ppb 1-MCP for 18 h) and low-temperature conditioning (LTC; a gradual decrease in temperature over 3 days) on CI reduction during cold quarantine. Avocado fruit stored at 1°C suffered from severe CI, lipid peroxidation, and increased expression of chilling-responsive genes of fruit peel. The combined therapeutic treatments alleviated CI in cold-quarantined fruit to the level in fruit stored at commercial temperature (5°C). A successful therapeutic treatment was developed to protect 'Hass' and 'Ettinger' avocado fruit during cold quarantine against fruit fly, while maintaining fruit quality. Subsequently, treated fruit stored at 1°C had a longer shelf life and less decay than the fruit stored at 5°C. This therapeutic treatment could potentially enable the export of avocado fruit to all quarantine-enforcing countries. Similar methods might be applicable to other types of fruit that require cold quarantine.

  2. The Pathogenic A2V Mutant Exhibits Distinct Aggregation Kinetics, Metal Site Structure, and Metal Exchange of the Cu2+ -Aβ Complex

    DEFF Research Database (Denmark)

    Somavarapu, Arun Kumar; Shen, Fei; Teilum, Kaare

    2017-01-01

    ) spectroscopy, again most notably for the A2V variant. Electron paramagnetic resonance (EPR) spectroscopy gives pKa values for transition between two Cu2+ coordination geometries (component I and II) of 7.4 (A2T), 7.9 (WT), and 8.4 (A2V), that is, component I is stabilized at physiological pH in the order A2T...

  3. Planetary Quarantine Annual Review, Space Technology and Research, July 1971 - July 1972

    Science.gov (United States)

    1973-01-01

    The effects of planetary quarantine constraints are assessed for advanced missions and unmanned planetary sample return missions. Considered are natural space environment factors, post launch recontamination effects, spacecraft microbial burden estimation and prediction, and spacecraft cleaning and decontamination techniques.

  4. Summary report on the use of irradiation as a quarantine treatment of agricultural commodities

    International Nuclear Information System (INIS)

    1985-01-01

    Considerable data are available to demonstrate that gamma irradiation is an effective quarantine treatment for papaya infested with fruit fly species found in Hawaii. These data are acceptable to the USDA-APHIS as a quarantine treatment for this commodity. However, its practical application can be realized only when FDA approves the use of irradiation, either for this purpose alone or as a process of food preservation. Additional data are needed to develop quarantine treatment schedules for irradiation of other commodities such as citrus, stone fruits, tropical fruits, etc., against these and other insect species. For this reason, a Consultant Meeting was convened at the East-West Center, University of Hawaii, Honolulu, Hawaii from 21 to 23 November, 1983, to evaluate existing data and to define future activities to establish the possible use of irradiation as an acceptable quarantine treatment

  5. 75 FR 81087 - South American Cactus Moth Quarantine; Addition of the State of Louisiana

    Science.gov (United States)

    2010-12-27

    ... indigenous to Argentina, southern Brazil, Paraguay, and Uruguay. It is a serious quarantine pest of Opuntia... under Executive Order 12866. List of Subjects in 7 CFR Part 301 Agricultural commodities, Plant diseases...

  6. Gamma irradiation as a quarantine treatment for walnuts infested with codling moths (Lepidoptera: Tortricidae)

    International Nuclear Information System (INIS)

    Burditt, A.K. Jr.

    1986-01-01

    Irradiation may be a potential quarantine treatment for either diapausing or nondiapausing codling moth, Cydia pomonella (L.), larvae in walnuts. Exposure of larvae to 51.9 Gy from a 60 Co source significantly reduced emergence of normal adults. The dose required for quarantine security (99.9968% mortality) was 230 Gy based on emergence of adults from treated larvae. Normal adults did not emerge from larvae exposed to 177 Gy in walnuts

  7. International Cooperation to Establish Standard Operating Procedure (SOP) for Quarantine Management of Irradiated Foods in International Trade

    International Nuclear Information System (INIS)

    Lee, J. W.; Byun, M. W.; Kim, J. H.; Choi, J. I.; Song, B. S.; Yoon, Y. H.; Kim, D. H.; Kim, W. G.; Kim, K. P.

    2010-02-01

    · Development of SOPs through various research activities such as building international cooperation, and analysing current status of food irradiation in domestic and international markets, export and import, international market size, and of R and D - Analysis of examples for quarantine management in agricultural product exporting countries and use of irradiation technology for agricultural product quarantine, and changes in international quarantine management - Analysis of SOPs for food irradiation quarantine in international organization (CODEX, IPPC, WHO). U.S, EU, China, India, and Australia. - Collaborative researches of India/Korea and China/Korea entered into an agreement for market trials · Publishment of irradiation quarantine management SOPs agreed to CODEX standards - Collaborative researches for quarantine management, avoiding Technical Barrier to Trade (TBT), and Sanitary Phytosanitary Measures were conducted, and advanced SOPs agreed with WTO/FTA system were published

  8. Food irradiation: Australian quarantine regulatory attitude toward food exports

    International Nuclear Information System (INIS)

    Luckman, Gary James

    2000-01-01

    The Australian Quarantine and Inspection Service (AQIS) is a major operational unit within the Federal Department of Agriculture, Fisheries and Forestry of Australia. AQIS has a long history of dealing with irradiation issues, as many imported goods (non food) require disinfestation treatment, for which gamma irradiation is the most cost effective, suitable and efficient means. A ministerial decision was taken in April 1997 which authorised AQIS to oversee a trial of irradiation as a pre-shipment treatment for food to be exported from Australia, with several caveats. Any such treatment would be required to meet importing country requirements, it would be conditional on export certification and would be required to meet certain minimum international requirements established by the Codex Alimentarius. These include minimum and maximum dosage levels and labelling to indicate irradiation treatment has taken place. Strong interest has been generated by the announcement of this trial in a number of food industry segments, who are anxious to participate in the trial program. Further to the anticipated success of the export trial, AQIS is drafting suitable legislation which will allow exports of irradiated foodstuffs from a number of food categories, on an ongoing basis. (author)

  9. Dynamics of an epidemic model with quarantine on scale-free networks

    Science.gov (United States)

    Kang, Huiyan; Liu, Kaihui; Fu, Xinchu

    2017-12-01

    Quarantine strategies are frequently used to control or reduce the transmission risks of epidemic diseases such as SARS, tuberculosis and cholera. In this paper, we formulate a susceptible-exposed-infected-quarantined-recovered model on a scale-free network incorporating the births and deaths of individuals. Considering that the infectivity is related to the degrees of infectious nodes, we introduce quarantined rate as a function of degree into the model, and quantify the basic reproduction number, which is shown to be dependent on some parameters, such as quarantined rate, infectivity and network structures. A theoretical result further indicates the heterogeneity of networks and higher infectivity will raise the disease transmission risk while quarantine measure will contribute to the prevention of epidemic spreading. Meanwhile, the contact assumption between susceptibles and infectives may impact the disease transmission. Furthermore, we prove that the basic reproduction number serves as a threshold value for the global stability of the disease-free and endemic equilibria and the uniform persistence of the disease on the network by constructing appropriate Lyapunov functions. Finally, some numerical simulations are illustrated to perform and complement our analytical results.

  10. Accepted monitoring or endured quarantine? Ebola contacts' perceptions in Senegal.

    Science.gov (United States)

    Desclaux, Alice; Badji, Dioumel; Ndione, Albert Gautier; Sow, Khoudia

    2017-04-01

    During the 2014-2016 West Africa Ebola epidemic, transmission chains were controlled through contact tracing, i.e., identification and follow-up of people exposed to Ebola cases. WHO recommendations for daily check-ups of physical symptoms with social distancing for 21 days were unevenly applied and sometimes interpreted as quarantine. Criticisms arose regarding the use of coercion and questioned contact tracing on ethical grounds. This article aims to analyze contact cases' perceptions and acceptance of contact monitoring at the field level. In Senegal, an imported case of Ebola virus disease in September 2014 resulted in placing 74 contact cases in home containment with daily visits by volunteers. An ethnographic study based on in-depth interviews with all stakeholders performed in September-October 2014 showed four main perceptions of monitoring: a biosecurity preventive measure, suspension of professional activity, stigma attached to Ebola, and a social obligation. Contacts demonstrated diverse attitudes. Initially, most contacts agreed to comply because they feared being infected. They adhered to the national Ebola response measures and appreciated the empathy shown by volunteers. Later, acceptance was improved by the provision of moral, economic, and social support, and by the final lack of any new contamination. But it was limited by the socio-economic impact on fulfilling basic needs, the fear of being infected, how contacts' family members interpreted monitoring, conflation of contacts as Ebola cases, and challenging the rationale for containment. Acceptance was also related to individual aspects, such as the professional status of women and health workers who had been exposed, and contextual aspects, such as the media's role in the social production of stigma. Ethnographic results show that, even when contacts adhere rather than comply to containment through coercion, contact monitoring raises several ethical issues. These insights should contribute to

  11. LESSONS FROM A RETROSPECTIVE ANALYSIS OF A 5-YR PERIOD OF QUARANTINE AT SAN DIEGO ZOO: A RISK-BASED APPROACH TO QUARANTINE ISOLATION AND TESTING MAY BENEFIT ANIMAL WELFARE.

    Science.gov (United States)

    Wallace, Chelsea; Marinkovich, Matt; Morris, Pat J; Rideout, Bruce; Pye, Geoffrey W

    2016-03-01

    Quarantine is designed primarily to prevent the introduction of transmissible diseases to zoological collections. Improvements in preventive medicine, disease eradication, and comprehensive pathology programs call into question current industry quarantine standards. Disease risk analysis was used at the San Diego Zoo (SDZ) and the SDZ Safari Park to eliminate quarantine isolation and transmissible disease testing for animals transferred between the two institutions. To determine if a risk-based approach might be valid between other institutions and SDZ, we reviewed quarantine data for animals arriving at SDZ from 81 Association of Zoos and Aquariums (AZA)-accredited and 124 other sources (e.g., non-AZA-accredited institutions, private breeders, private dealers, governmental bodies) over a 5-yr period (2009-2013). No mammal or herptile failed quarantine due to transmissible diseases of concern. Approximately 2.5% of incoming birds failed quarantine due to transmissible disease; however, all 14 failed individuals were obtained from three nonaccredited sources (private breeders, confiscation). The results of our study suggest that a risk-based approach could be used to minimize or eliminate quarantine for the transfer of animals from institutions with comprehensive disease surveillance programs and/or preshipment testing practices. Quarantine isolation with testing remains an essential defense against introducing transmissible diseases of concern when there is a lack of health knowledge about the animals being received.

  12. The Quarantine Protection of Sub-Antarctic Australia: Two Islands, Two Regimes

    Directory of Open Access Journals (Sweden)

    Sandra Potter

    2007-11-01

    Full Text Available Sub-Antarctic Heard Island and Macquarie Island are among Australia’s offshore properties susceptible to colonization by species introduced by humans. While both islands share World Heritage status and are IUCN Category Ia Protected Areas (Strict Nature Reserves, different quarantine protection regimes are in operation. Macquarie Island’s biosecurity appears to be less catered for while the means and likelihood of introductions are greater. The administrative, political, practical and geographical contexts within which quarantine management planning takes place variously impact on the level of quarantine protection provided to both islands. These and other remote sites of high conservation value are unlikely to receive heightened protection until the issues associated with such management contexts receive greater attention.

  13. Mother Nature versus human nature: public compliance with evacuation and quarantine.

    Science.gov (United States)

    Manuell, Mary-Elise; Cukor, Jeffrey

    2011-04-01

    Effectively controlling the spread of contagious illnesses has become a critical focus of disaster planning. It is likely that quarantine will be a key part of the overall public health strategy utilised during a pandemic, an act of bioterrorism or other emergencies involving contagious agents. While the United States lacks recent experience of large-scale quarantines, it has considerable accumulated experience of large-scale evacuations. Risk perception, life circumstance, work-related issues, and the opinions of influential family, friends and credible public spokespersons all play a role in determining compliance with an evacuation order. Although the comparison is not reported elsewhere to our knowledge, this review of the principal factors affecting compliance with evacuations demonstrates many similarities with those likely to occur during a quarantine. Accurate identification and understanding of barriers to compliance allows for improved planning to protect the public more effectively. © 2011 The Author(s). Disasters © Overseas Development Institute, 2011.

  14. Two Quarantine Models on the Attack of Malicious Objects in Computer Network

    Directory of Open Access Journals (Sweden)

    Bimal Kumar Mishra

    2012-01-01

    Full Text Available SEIQR (Susceptible, Exposed, Infectious, Quarantined, and Recovered models for the transmission of malicious objects with simple mass action incidence and standard incidence rate in computer network are formulated. Threshold, equilibrium, and their stability are discussed for the simple mass action incidence and standard incidence rate. Global stability and asymptotic stability of endemic equilibrium for simple mass action incidence have been shown. With the help of Poincare Bendixson Property, asymptotic stability of endemic equilibrium for standard incidence rate has been shown. Numerical methods have been used to solve and simulate the system of differential equations. The effect of quarantine on recovered nodes is analyzed. We have also analyzed the behavior of the susceptible, exposed, infected, quarantine, and recovered nodes in the computer network.

  15. Rapid decay in the relative efficiency of quarantine to halt epidemics in networks

    Science.gov (United States)

    Strona, Giovanni; Castellano, Claudio

    2018-02-01

    Several recent studies have tackled the issue of optimal network immunization by providing efficient criteria to identify key nodes to be removed in order to break apart a network, thus preventing the occurrence of extensive epidemic outbreaks. Yet, although the efficiency of those criteria has been demonstrated also in empirical networks, preventive immunization is rarely applied to real-world scenarios, where the usual approach is the a posteriori attempt to contain epidemic outbreaks using quarantine measures. Here we compare the efficiency of prevention with that of quarantine in terms of the tradeoff between the number of removed and saved nodes on both synthetic and empirical topologies. We show how, consistent with common sense, but contrary to common practice, in many cases preventing is better than curing: depending on network structure, rescuing an infected network by quarantine could become inefficient soon after the first infection.

  16. 7 CFR 301.11 - Notice of quarantine; prohibition on the interstate movement of certain imported plants and plant...

    Science.gov (United States)

    2010-01-01

    ... movement of certain imported plants and plant parts. 301.11 Section 301.11 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES Imported Plants and Plant Parts § 301.11 Notice of quarantine; prohibition on...

  17. 19 CFR 147.23 - Compliance with Plant Quarantine Act and Federal Food, Drug, and Cosmetic Act.

    Science.gov (United States)

    2010-04-01

    ... Food, Drug, and Cosmetic Act. 147.23 Section 147.23 Customs Duties U.S. CUSTOMS AND BORDER PROTECTION... Laws § 147.23 Compliance with Plant Quarantine Act and Federal Food, Drug, and Cosmetic Act. (a) Plant... the plant quarantine regulations. (b) Federal Food, Drug, and Cosmetic Act. The entry of food products...

  18. 9 CFR 82.5 - Interstate movement of live birds and live poultry from a quarantined area.

    Science.gov (United States)

    2010-01-01

    ... the control and ownership of the owner for at least 90 days. Pet birds that have been under the... (END) § 82.5 Interstate movement of live birds and live poultry from a quarantined area. (a) Pet birds. An individual may move his or her pet birds interstate from a quarantined area only if the birds are...

  19. 75 FR 12961 - Regulation of the Interstate Movement of Lemons from Areas Quarantined for Mediterranean Fruit Fly

    Science.gov (United States)

    2010-03-18

    ... amending the list of regulated articles in our domestic fruit fly quarantine regulations. The regulations... Articles,'' lists articles subject to domestic quarantine regulations for several species of fruit fly.... APHIS-2009-0002) a proposal\\1\\ to amend the list of regulated articles in our domestic fruit fly...

  20. 7 CFR 301.32-4 - Conditions governing the interstate movement of regulated articles from quarantined areas.

    Science.gov (United States)

    2010-01-01

    ... DOMESTIC QUARANTINE NOTICES Fruit Flies § 301.32-4 Conditions governing the interstate movement of... domestic plant quarantines and regulations must also be met. (a) With a certificate or limited permit... enclosed vehicle or is completely enclosed by a covering adequate to prevent access by fruit flies (such as...

  1. 7 CFR 301.51-4 - Conditions governing the interstate movement of regulated articles from quarantined areas.

    Science.gov (United States)

    2010-01-01

    ... beetle; and (C) The article has not been combined or commingled with other articles so as to lose its... regulated articles from quarantined areas. 301.51-4 Section 301.51-4 Agriculture Regulations of the... of regulated articles from quarantined areas. (a) Any regulated article may be moved interstate from...

  2. 21 CFR 1271.60 - What quarantine and other requirements apply before the donor-eligibility determination is complete?

    Science.gov (United States)

    2010-04-01

    ... OTHER ACTS ADMINISTERED BY THE FOOD AND DRUG ADMINISTRATION HUMAN CELLS, TISSUES, AND CELLULAR AND TISSUE-BASED PRODUCTS Donor Eligibility § 1271.60 What quarantine and other requirements apply before the... 21 Food and Drugs 8 2010-04-01 2010-04-01 false What quarantine and other requirements apply...

  3. Nuclear science in disinfestations of agro-stored products and quarantine

    International Nuclear Information System (INIS)

    Seth, R.K.; Zubeda; Zarin, Mahtab; Mehta, V.K.

    2006-01-01

    The present review deals with recent advances showing a notable increase in research and application of nuclear science, with a special, rather renewed focus on use of different types of radiation for their lethal/sterilizing potential against pests of stored products and quarantine as there is an urgent need to reduce the negative impacts of chemical pest control methods on the treated commodities and environment. Various types of radiation have some limitations, but their pragmatic disinfestation potential at postharvest and quarantine level, with possible modifications are discussed. (author)

  4. Nosocomial pathogens

    African Journals Online (AJOL)

    remains an important problem in intensive care units. Hospital wards had been shown to act as reservoirs of pathogenic microorganisms associated with infection. To assess the prevalence of pathogenic organisms in the environment of the neonatal unit, 92 swabs were randomly collected from cots, incubators and various ...

  5. 76 FR 52541 - Asian Longhorned Beetle; Quarantined Areas and Regulated Articles

    Science.gov (United States)

    2011-08-23

    .... APHIS-2010-0128] Asian Longhorned Beetle; Quarantined Areas and Regulated Articles AGENCY: Animal and... interstate movement of regulated articles from those areas will be restricted. We are also updating the list of regulated articles in order to reflect new information concerning host plants. These actions are...

  6. 75 FR 81832 - Asian Longhorned Beetle; Quarantined Area and Regulated Articles

    Science.gov (United States)

    2010-12-29

    .... APHIS-2010-0004] Asian Longhorned Beetle; Quarantined Area and Regulated Articles AGENCY: Animal and... interstate movement of regulated articles from that area. The interim rule also updated the list of regulated articles in order to reflect new information concerning host plants. The interim rule was necessary to...

  7. 40 CFR 166.20 - Application for a specific, quarantine, or public health exemption.

    Science.gov (United States)

    2010-07-01

    ... 40 Protection of Environment 23 2010-07-01 2010-07-01 false Application for a specific, quarantine, or public health exemption. 166.20 Section 166.20 Protection of Environment ENVIRONMENTAL PROTECTION... personnel, university personnel or other persons similarly qualified in the field of pest control; and (ii...

  8. 7 CFR 301.81-4 - Interstate movement of regulated articles from quarantined areas.

    Science.gov (United States)

    2010-01-01

    ... Imported Fire Ant Quarantine and Regulations § 301.81-4 Interstate movement of regulated articles from... inaccessible to the imported fire ant, or in locations that have been treated in accordance with the methods... regulated article is a soil sample being moved to a laboratory approved by the Administrator 3 to process...

  9. 77 FR 58469 - Asian Longhorned Beetle; Quarantined Areas in Massachusetts, Ohio, and New York

    Science.gov (United States)

    2012-09-21

    .... APHIS-2012-0003] Asian Longhorned Beetle; Quarantined Areas in Massachusetts, Ohio, and New York AGENCY.... SUMMARY: We are adopting as a final rule, without change, an interim rule that amended the Asian... areas. The interim rule was necessary to prevent the artificial spread of Asian longhorned beetle to...

  10. Quarantine contagion dynamics in the city of Dnipropetrovsk and Mezhova district

    Directory of Open Access Journals (Sweden)

    V. G. Gavrilyuk

    2007-02-01

    Full Text Available The quarantine contagion dynamics in the city ofDnipropetrovskand Mezhova district is presented. The circulation of respiratory infections and acute intestinal diseases for last 10 years (1996–2006 was studied. The infective episodes of diphtheria, meningitis, salmonellosis, dysentery and escherichiosis in the Dnipropetrovsk city were registered. We observed the incidence rate of dyphtheria and salmonellosis in the Mezhova district.

  11. Sensitivity of the quarantine pest rough sweetpotato weevil, Blosyrus asellus to postharvest irradiation treatment

    Science.gov (United States)

    Rough sweetpotato weevil, Blosyrus asellus (Olivier), is a new quarantine pest of Hawaii sweetpotatoes. Currently, sweetpotatoes can be exported from Hawaii to the U.S. mainland using a postharvest irradiation treatment of 150 Gy to control three other regulated insect pests. Studies were conducted...

  12. 76 FR 1338 - Emerald Ash Borer; Quarantined Areas; Maryland, Michigan, Minnesota, Missouri, Pennsylvania...

    Science.gov (United States)

    2011-01-10

    .... APHIS-2008-0072] Emerald Ash Borer; Quarantined Areas; Maryland, Michigan, Minnesota, Missouri... emerald ash borer (EAB). The interim rule was necessary to prevent the artificial spread of EAB into... CONTACT: Mr. Paul Chaloux, National Program Coordinator, Emerald Ash Borer Program, Emergency and Domestic...

  13. 76 FR 5679 - Emerald Ash Borer; Addition of Quarantined Areas in Kentucky, Michigan, Minnesota, New York...

    Science.gov (United States)

    2011-02-02

    ...-0098] Emerald Ash Borer; Addition of Quarantined Areas in Kentucky, Michigan, Minnesota, New York... interim rule that amended the emerald ash borer regulations by adding portions of Kentucky, Michigan... those areas, was necessary to prevent the artificial spread of the emerald ash borer to noninfested...

  14. 75 FR 29189 - Emerald Ash Borer; Addition of Quarantined Areas in Kentucky, Michigan, Minnesota, New York...

    Science.gov (United States)

    2010-05-25

    .... APHIS-2009-0098] Emerald Ash Borer; Addition of Quarantined Areas in Kentucky, Michigan, Minnesota, New..., USDA. ACTION: Interim rule and request for comments. SUMMARY: We are amending the emerald ash borer... the emerald ash borer to noninfested areas of the United States. DATES: This interim rule is effective...

  15. A list of methods to detect arthropod quarantine pests in Europe

    NARCIS (Netherlands)

    Augustin, S.; Kogel, de W.J.; Donner, P.; Faccoli, M.; Lees, D.C.; Marini, L.; Mori, N.; Toffolo, E.P.; Quilici, S.; Roques, A.; Yart, A.; Battisti, A.

    2012-01-01

    A total of 177 species of quarantine arthropods in Europe have been analysed for detection methods that are used in surveillance. This paper provides a link to a list where the methods most frequently used, either alone or in combination, are given for each species. Inspection remains the most

  16. Taking Care of Your Behavioral Health: Tips for Social Distancing, Quarantine, and Isolation

    Science.gov (United States)

    ... is one of the best ways to reduce anxiety, depression, loneliness, and boredom during social distancing, quarantine, and isolation. You can: ƒ Use the ... daily activities, or using drugs or alcohol to cope—speak to a health care ... as sadness, depression, anxiety, or feel like you want to harm yourself ...

  17. 7 CFR 301.52 - Quarantine; restriction on interstate movement of specified regulated articles.

    Science.gov (United States)

    2010-01-01

    ... articles: (1) Cotton and wild cotton, including all parts of these plants. (2) Seed cotton. (3) Cottonseed... of these plants, except: (i) Canned or frozen okra; or (ii) Okra seed; and (iii) Fresh, edible fruits... (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE DOMESTIC QUARANTINE NOTICES...

  18. Lessons from the History of Quarantine, from Plague to Influenza A

    Centers for Disease Control (CDC) Podcasts

    2013-05-08

    Reginald Tucker reads an abridged version of the Emerging Infectious Diseases’ Historical Review, Lessons from the History of Quarantine, from Plague to Influenza A.  Created: 5/8/2013 by National Center for Emerging and Zoonotic Infectious Diseases (NCEZID).   Date Released: 5/15/2013.

  19. Generic ionizing radiation quarantine treatments against fruit flies (Diptera: Tephritidae) proposed.

    Science.gov (United States)

    Hallman, Guy J; Loaharanu, Paisan

    2002-10-01

    Tephritid fruit flies comprise the most important group of quarantined pests of fresh produce. Most quarantine treatments of fresh agricultural commodities are directed against these pests, and considerable effort in detection, trapping, and population control is expended worldwide to prevent these pests from invading new territories. Ionizing radiation has been studied for 70 yr for its possible use as a quarantine treatment against fruit flies, but has only been applied commercially on a limited basis since 1995. The treatment has great potential and will probably be used extensively in the future as it is tolerated by more species of fruits than any other major treatment. The U.S. Department Agriculture, Animal and Plant Health Inspection Service only recently proposed allowing irradiation for fresh agricultural imports from other countries, and other countries are studying proposals to do likewise. In 1991, the International Consultative Group on Food Irradiation recommended a generic dose against all tephritid fruit flies of 150 Gy. This article examines the literature dealing with irradiation quarantine treatments against fruit flies and recommends minimum absorbed doses of 70 Gy for Anastrepha spp., 101 Gy for Bactrocera jarvisi and B. tryoni, and 150 Gy for all Tephritidae except when fruits have been stored in hypoxic atmospheres.

  20. Mango fruit aroma volatile production following quarantine hot water treatment and subsequent ripening

    Science.gov (United States)

    Mangos are an important tropical fruit crop worldwide that are appreciated for their attractive peel and flesh colors, juicy texture, sweetness, and unique aroma. Mangos exported to the U.S. receive quarantine hot water treatment (QHWT) at 46.1 °C for 65 to 110 min (depending on fruit shape and size...

  1. Multiplex detection of plant pathogens using a microsphere immunoassay technology.

    Directory of Open Access Journals (Sweden)

    Ratthaphol Charlermroj

    Full Text Available Plant pathogens are a serious problem for seed export, plant disease control and plant quarantine. Rapid and accurate screening tests are urgently required to protect and prevent plant diseases spreading worldwide. A novel multiplex detection method was developed based on microsphere immunoassays to simultaneously detect four important plant pathogens: a fruit blotch bacterium Acidovorax avenae subsp. citrulli (Aac, chilli vein-banding mottle virus (CVbMV, potyvirus, watermelon silver mottle virus (WSMoV, tospovirus serogroup IV and melon yellow spot virus (MYSV, tospovirus. An antibody for each plant pathogen was linked on a fluorescence-coded magnetic microsphere set which was used to capture corresponding pathogen. The presence of pathogens was detected by R-phycoerythrin (RPE-labeled antibodies specific to the pathogens. The assay conditions were optimized by identifying appropriate antibody pairs, blocking buffer, concentration of RPE-labeled antibodies and assay time. Once conditions were optimized, the assay was able to detect all four plant pathogens precisely and accurately with substantially higher sensitivity than enzyme-linked immunosorbent assay (ELISA when spiked in buffer and in healthy watermelon leaf extract. The assay time of the microsphere immunoassay (1 hour was much shorter than that of ELISA (4 hours. This system was also shown to be capable of detecting the pathogens in naturally infected plant samples and is a major advancement in plant pathogen detection.

  2. Multiplex detection of plant pathogens using a microsphere immunoassay technology.

    Science.gov (United States)

    Charlermroj, Ratthaphol; Himananto, Orawan; Seepiban, Channarong; Kumpoosiri, Mallika; Warin, Nuchnard; Oplatowska, Michalina; Gajanandana, Oraprapai; Grant, Irene R; Karoonuthaisiri, Nitsara; Elliott, Christopher T

    2013-01-01

    Plant pathogens are a serious problem for seed export, plant disease control and plant quarantine. Rapid and accurate screening tests are urgently required to protect and prevent plant diseases spreading worldwide. A novel multiplex detection method was developed based on microsphere immunoassays to simultaneously detect four important plant pathogens: a fruit blotch bacterium Acidovorax avenae subsp. citrulli (Aac), chilli vein-banding mottle virus (CVbMV, potyvirus), watermelon silver mottle virus (WSMoV, tospovirus serogroup IV) and melon yellow spot virus (MYSV, tospovirus). An antibody for each plant pathogen was linked on a fluorescence-coded magnetic microsphere set which was used to capture corresponding pathogen. The presence of pathogens was detected by R-phycoerythrin (RPE)-labeled antibodies specific to the pathogens. The assay conditions were optimized by identifying appropriate antibody pairs, blocking buffer, concentration of RPE-labeled antibodies and assay time. Once conditions were optimized, the assay was able to detect all four plant pathogens precisely and accurately with substantially higher sensitivity than enzyme-linked immunosorbent assay (ELISA) when spiked in buffer and in healthy watermelon leaf extract. The assay time of the microsphere immunoassay (1 hour) was much shorter than that of ELISA (4 hours). This system was also shown to be capable of detecting the pathogens in naturally infected plant samples and is a major advancement in plant pathogen detection.

  3. State of diagnosing infectious pathogens using colloidal nanomaterials.

    Science.gov (United States)

    Kim, Jisung; Mohamed, Mohamed A Abdou; Zagorovsky, Kyryl; Chan, Warren C W

    2017-11-01

    Infectious diseases are a major global threat that accounts for one of the leading causes of global mortality and morbidity. Prompt diagnosis is a crucial first step in the management of infectious threats, which aims to quarantine infected patients to avoid contacts with healthy individuals and deliver effective treatments prior to further spread of diseases. This review article discusses current advances of diagnostic systems using colloidal nanomaterials (e.g., gold nanoparticles, quantum dots, magnetic nanoparticles) for identifying and differentiating infectious pathogens. The challenges involved in the clinical translation of these emerging nanotechnology based diagnostic devices will also be discussed. Copyright © 2017 Elsevier Ltd. All rights reserved.

  4. Evaluation of predicted Medfly (Ceratitis capitata quarantine length in the United States utilizing degree-day and agent-based models [version 1; referees: 2 approved

    Directory of Open Access Journals (Sweden)

    Travis Collier

    2017-10-01

    Full Text Available Invasions by pest insects pose a significant threat to agriculture worldwide. In the case of Ceratitis capitata incursions on the US mainland, where it is not officially established, repeated detections are followed by quarantines and treatments to eliminate the invading population. However, it is difficult to accurately set quarantine duration because non-detection may not mean the pest is eliminated. Most programs extend quarantine lengths past the last fly detection by calculating the amount of time required for 3 generations to elapse under a thermal unit accumulation development model (“degree day”. A newer approach is to use an Agent-Based Simulation (ABS to explicitly simulate population demographics and elimination. Here, predicted quarantine lengths for 11 sites in the continental United States are evaluated using both approaches. Results indicate a strong seasonality in quarantine length, with longer predictions in the second half of the year compared with the first; this pattern is more extreme in degree day predictions compared with ABS. Geographically, quarantine lengths increased with latitude, though this was less pronounced under the ABS. Variation in quarantine lengths for particular times and places was dramatically larger for degree day than ABS, generally spiking in the middle of the year for degree day and peaking in second half of the year for ABS. Analysis of 34 C. capitata quarantines from 1975 to 2017 in California shows that, for all but two, quarantines were started in the second half of the year, when degree day quarantine lengths are longest and have the highest uncertainty. For a set of hypothetical outbreaks based on these historical quarantines, the ABS produced significantly shorter quarantines than degree day calculations. Overall, ABS quarantine lengths were more consistent than degree day predictions, avoided unrealistically long values, and captured effects of rare events such as cold snaps.

  5. Evaluation of predicted Medfly (Ceratitis capitata) quarantine length in the United States utilizing degree-day and agent-based models.

    Science.gov (United States)

    Collier, Travis; Manoukis, Nicholas

    2017-01-01

    Invasions by pest insects pose a significant threat to agriculture worldwide. In the case of Ceratitis capitata incursions on the US mainland, where it is not officially established, repeated detections are followed by quarantines and treatments to eliminate the invading population. However, it is difficult to accurately set quarantine duration because non-detection may not mean the pest is eliminated. Most programs extend quarantine lengths past the last fly detection by calculating the amount of time required for 3 generations to elapse under a thermal unit accumulation development model ("degree day"). A newer approach is to use an Agent-Based Simulation (ABS) to explicitly simulate population demographics and elimination. Here, predicted quarantine lengths for 11 sites in the continental United States are evaluated using both approaches. Results indicate a strong seasonality in quarantine length, with longer predictions in the second half of the year compared with the first; this pattern is more extreme in degree day predictions compared with ABS. Geographically, quarantine lengths increased with latitude, though this was less pronounced under the ABS. Variation in quarantine lengths for particular times and places was dramatically larger for degree day than ABS, generally spiking in the middle of the year for degree day and peaking in second half of the year for ABS. Analysis of 34 C. capitata quarantines from 1975 to 2017 in California shows that, for all but two, quarantines were started in the second half of the year, when degree day quarantine lengths are longest and have the highest uncertainty. For a set of hypothetical outbreaks based on these historical quarantines, the ABS produced significantly shorter quarantines than degree day calculations. Overall, ABS quarantine lengths were more consistent than degree day predictions, avoided unrealistically long values, and captured effects of rare events such as cold snaps.

  6. Regulation of use of radiation for quarantine purposes; Regulamentacao do uso da radiacao para fins quarentenarios

    Energy Technology Data Exchange (ETDEWEB)

    Itepan, Natanael Marcio, E-mail: natanael.itepan@unianhanguera.edu.b [Faculdade Anhanguera, Piracicaba, SP (Brazil); Costa, Neivaldo; Furlan, Gilberto Ribeiro; Walder, Julio Marcos Melges, E-mail: neivaldo@cena.usp.b, E-mail: gilfurlan@cena.usp.b, E-mail: jmwalder@cena.usp.b [Centro de Energia Nuclear na Agricultura (CENA/USP), Piracicaba, SP (Brazil)

    2011-07-01

    The main aspects of Instruction No. 9 are: a) the nuclear plant that use ionizing radiation as a phyto sanitary treatment for quarantine purposes, must be accredited by the agency of the Agriculture, Livestock and Supply Ministry (MAPA) and the licensing by the Nuclear Energy National Commission (CNEN) and other regulatory bodies, b) control of the applied dose will follow a standard operating procedure should be performed by independent organization, authorized by the Brazilian ONPF (Phyto sanitary Protection National Organization), c) the unit of radiation treatment should ensure traceability and must maintain records of phyto sanitary treatments, d) there should be bilateral work plan between the ONPF of Brazil and other countries for the established radiation treatment protocol. The ONPF of Brazil is the Sanitary Vegetarian Department. Ionizing radiation (cold pasteurization) is shown in an alternative technology to phyto sanitary control for quarantine purposes. (author)

  7. Effects of gamma irradiation as a quarantine treatment on development of codling moth larvae

    International Nuclear Information System (INIS)

    Burditt, A.K. Jr.; Moffitt, H.R.; Hungate, F.P.

    1985-03-01

    Codling moth, Cydia pomonella (L.), larvae were exposed to gamma radiation at doses upto 160 Gy. Following irradiation the larvae were permited further development, pupation and adult emergence. The number of adults emerging, mature larvae and pupae present were determined. Data from these studies will be used to predict doses of gamma irradiation required as a quarantine treatment to prevent emergence of codling moth adults from fruit infested by larvae. 5 refs., 1 tab

  8. Effects of gamma irradiation as a quarantine treatment on development of codling moth larvae

    Energy Technology Data Exchange (ETDEWEB)

    Burditt, A.K. Jr.; Moffitt, H.R.; Hungate, F.P.

    1985-03-01

    Codling moth, Cydia pomonella (L.), larvae were exposed to gamma radiation at doses upto 160 Gy. Following irradiation the larvae were permited further development, pupation and adult emergence. The number of adults emerging, mature larvae and pupae present were determined. Data from these studies will be used to predict doses of gamma irradiation required as a quarantine treatment to prevent emergence of codling moth adults from fruit infested by larvae. 5 refs., 1 tab.

  9. Evaluation of the quality and shelf life of gamma irradiated blueberries by quarantine purposes

    Science.gov (United States)

    Lires, Carla M. L.; Docters, Andrea; Horak, Celina I.

    2018-02-01

    Fresh blueberries (Vaccinium spp.) are considered one of the richest sources of phenolic compounds and are appreciated for their high antioxidant capacity. But they are hosts in Argentina of the quarantine pests Ceratitis capitata and Anastrepha fraterculus, and have to be treated to avoid its spreading. Irradiation is being introduced in the Agricultural World trade, increasing exponentially on the last years. In order to guarantee the success of this process, it is required previous to the rutinary treatment, to define the irradiation dose range to be applied. The minimum dose for these pests has been already approved in the IPPC standard 28. The maximum dose depends on the tolerance of the fruit cultivars, maturity, pre-harvest conditions, harvest time, storage conditions, and interactions among these factors. The postharvest quality of Argentina´s blueberry treated with irradiation doses of 150 (generic quarantine dose used for fruit flies) and 300 Gy (to evaluate tolerance) was evaluated. The studies included blueberries from different harvest seasons 2009-2012). Misty, O'Neal and Emeral varieties were chosen, because they represent the biggest volume of exported blueberry from Argentina. The results indicated that irradiation at 150 Gy and 300 Gy did not significantly affect the postharvest quality and slightly improved shelf life of the different blueberries varieties. Therefore, it is possible to use irradiation as an alternative quarantine treatment for Argentina´s blueberries, establishing a dose range appropriate to be applied on a commercial irradiation facility.

  10. Quarantine treatment of agricultural products for export and import by gamma irradiation

    Energy Technology Data Exchange (ETDEWEB)

    Kwon, Joong Ho; Roh, M.J.; Chung, H.W.; Lee, J.E.; Park, N.Y.; Kwon, Y.J.; Seo, S.J. [Kyungbuk National University, Taegu (Korea)

    1999-04-01

    To pre-establish an alternative technique to the toxic fumigant, methyl bromide which is the current quarantine measure of agricultural products for export and import, some selected agricultural products, such as chestnut, acorn, red bean and mung bean, were subjected to a preliminary study to confirm the comparative effects of gamma irradiation and MBr fumigant on their disinfestation and quality, thereby preparing the basic data for the practical approach. Current quarantine activities were examined and the related limitations were investigated. Quarantine-related pests were investigated on their radiosensitivity and disinfestation effects by both treatments. The pests in chestnut and acorn, Curculio skkimensis Heller, Curculio dentipes Roelofs, and Dichocrocis punctiferalis Guenee showed an increased mortality when exposed to above 0.5 kGy irradiation, resulting in 100% of mortality three weeks later. Callosobruchus chinensis Linne from both red and mung beans revealed a apparent mortality at around 10 days after irradiation of 1 to 3 kGy. Current fumigation was perfect in its disinfesting capability, but it caused the detrimental effects on physical quality of agricultural produce. Whereas, irradiation doses suitable for controlling the pests did not induce any significant changes in the quality of the samples. (author). 53 refs., 74 figs., 138 tabs.

  11. Effect of irradiation as quarantine treatment on citrus fruit quality

    International Nuclear Information System (INIS)

    Betancurt, Pablo; Montalban, Antonio; Arcia, Patricia; Borthagaray, Maria D.; Curutchet, Ana; Pica, Leticia; Soria, Alejandra; Abreu, Anibal V.; Ares, M. Ines

    2009-01-01

    Gamma radiations have been used to improve sanitation treatments without significant effects on fresh fruit quality. The objective of this work was to evaluate the fruit quality characteristics of citrus variety Valencia (Valencia Late), main variety produced and exported in Uruguay. All samples were stored at 3-5 deg C, 80% RH, for 20 and 40 days. Irradiation doses used were 0,35 kGy min. and 0,80 kGy max. (doses that also eliminate the fruit fly). Irradiation experiments were conducted using irradiation equipment from Atomic Center (CAE), year 1968, Co60 source, 800.000 Ci. The effects of irradiation on sensory qualities and physical characteristics were studied. The attributes evaluated were visual appearance (1- 4 hedonic scale, expert), overall acceptance (1-9 hedonic scale, consumers), texture (TAB Stevens, speed: 2m/s, distance: 2mm), yield of juice and colour (Hunter values). In general, no significant changes in these parameters were observed after irradiation. Quality was not significantly affected by doses usually applied to decrease the viability of pathogen that cause citrus Scab. This is an important contribution for the protocols that would allow citrus fruit exportation. (author)

  12. Present status of research on efficacy of quarantine treatment for horticultural crops in the USA with special reference to the use of irradiation as a potential quarantine treatment

    International Nuclear Information System (INIS)

    Burditt, A.K. Jr.

    1985-01-01

    Research on efficacy of quarantine treatments for horticultural crops has been conducted in the United States of America by scientists of the U.S. Department of Agriculture, Agricultural Research Service (ARS), and by scientists in various state research organizations for many years. ARS scientists have been investigating effectiveness of fumigation using volatile chemicals such as ethylene dibromide, methyl bromide, phosphine and others; physical methods including cold, heat, modified atmosphere and gamma irradiation; and biological methods such as host susceptibility and host inspection as treatments for commodities infested by fruit flies and other pests. ARS and state scientists are studying possible adverse effects of such treatments on the commodities. This research also involves cooperation with the U.S. Department of Energy and its contractors, Sandia Laboratories, CH 2 M Hill, and Battelle Pacific Northwest Laboratories. (author)

  13. Efficiency of quarantine and self-protection processes in epidemic spreading control on scale-free networks

    Science.gov (United States)

    Esquivel-Gómez, Jose de Jesus; Barajas-Ramírez, Juan Gonzalo

    2018-01-01

    One of the most effective mechanisms to contain the spread of an infectious disease through a population is the implementation of quarantine policies. However, its efficiency is affected by different aspects, for example, the structure of the underlining social network where highly connected individuals are more likely to become infected; therefore, the speed of the transmission of the decease is directly determined by the degree distribution of the network. Another aspect that influences the effectiveness of the quarantine is the self-protection processes of the individuals in the population, that is, they try to avoid contact with potentially infected individuals. In this paper, we investigate the efficiency of quarantine and self-protection processes in preventing the spreading of infectious diseases over complex networks with a power-law degree distribution [ P ( k ) ˜ k - ν ] for different ν values. We propose two alternative scale-free models that result in power-law degree distributions above and below the exponent ν = 3 associated with the conventional Barabási-Albert model. Our results show that the exponent ν determines the effectiveness of these policies in controlling the spreading process. More precisely, we show that for the ν exponent below three, the quarantine mechanism loses effectiveness. However, the efficiency is improved if the quarantine is jointly implemented with a self-protection process driving the number of infected individuals significantly lower.

  14. Foodborne pathogens

    Directory of Open Access Journals (Sweden)

    Thomas Bintsis

    2017-06-01

    Full Text Available Foodborne pathogens are causing a great number of diseases with significant effects on human health and economy. The characteristics of the most common pathogenic bacteria (Bacillus cereus, Campylobacter jejuni, Clostridium botulinum, Clostridium perfringens, Cronobacter sakazakii, Esherichia coli, Listeria monocytogenes, Salmonella spp., Shigella spp., Staphylococccus aureus, Vibrio spp. and Yersinia enterocolitica, viruses (Hepatitis A and Noroviruses and parasites (Cyclospora cayetanensis, Toxoplasma gondii and Trichinella spiralis, together with some important outbreaks, are reviewed. Food safety management systems based on to classical hazard-based approach has been proved to be inefficient, and risk-based food safety approach is now suggested from leading researchers and organizations. In this context, a food safety management system should be designed in a way to estimate the risks to human health from food consumption and to identify, select and implement mitigation strategies in order to control and reduce these risks. In addition, the application of suitable food safety education programs for all involved people in the production and consumption of foods is suggested.

  15. Irradiation as a quarantine treatment for the solenopsis mealybug, Phenacoccus solenopsis

    International Nuclear Information System (INIS)

    Huang, Fang; Li, Weidi; Li, Xiuqiong; Bei, Yawei; Lin, Wencai; Lu, Yaobin; Wang, Bingkui

    2014-01-01

    Phenacoccus solenopsis is an aggressively invasive species that targets agricultural and ornamental plants, thereby threatening the world cotton industry and other crops. P. solenopsis has been listed as a quarantine insect in Europe and China. The utilization of phytosanitary irradiation as a potential treatment for disinfesting agricultural commodities in trade has expanded rapidly in recent years. A reasonable dose of radiation to eliminate P. solenopsis needs to be determined, taking into account the side effects of radiation on agricultural products and the species-specific tolerance of the insect to radiation. We applied radiation ranging from 50 to 200 Gy to P. solenopsis to determine the optimal dose. Both the radiation dose and the developmental stage of the insect were independent variables. Higher doses of radiation or lesser mature insect stages provided more effective treatment. In nymphs, a radiation dose of 100 Gy caused extinction of the irradiated population by disrupting ovary development, while 150 Gy caused 100% mortality. In adults, all tested doses of irradiation did not affect longevity, but we were able to prevent reproduction with high (150 and 200 Gy) doses. In P. solenopsis, a 100 Gy dose of radiation could eliminate the irradiated population in two generations. The mortality curve showed a steep slope beyond 150 Gy; thus, if killing all of the insects in a shorter amount of time is necessary, 200 Gy may be a reasonable dose for the quarantine treatment of the solenopsis mealybug. - Highlights: • Both ‘radiation dose’ and ‘irradiated insect stage’ are important factors. • 100-Gy irradiation could achieve population extinction in two generations. • 200 Gy should be a reasonable dose in the quarantine treatment

  16. Quality of 'Brightwell' and 'Tifblue' blueberries after gamma irradiation for quarantine treatment

    International Nuclear Information System (INIS)

    Miller, W.R.; McDonald, R.E.

    1996-01-01

    Blueberries must be subjected to a quarantine treatment of methyl bromide fumigation when shipped to certain domestic or export markets. The principle insects that inhibit distribution of blueberries are the apple maggot [Rhagoletis pomonella (Walsh)], blueberry maggot (R. mendax Curran), and plum curculio [Conotrachelus nenuphar (Herbst)]. Methyl bromide fumigation is the only approved quarantine treatment for blueberries and it is scheduled to be phased out by the year 2001. Highbush blueberries’ tolerance to low-dose irradiation is cultivar-dependent (Eaton et al., 1970). Two main cultivars grown in Florida, ‘Climax’ and ‘Sharpblue’, will tolerate irradiation up to 0.75 kGy without loss of fruit market quality (Miller et al., 1994a, 1994b, 1995). A 1.0-kGy dose is the maximum allowed (U.S. Food and Drug Administration, 1986) for treatment of fresh fruit or vegetables, and reportedly (personal communications, J. Sharp and G. Hallman) »0.3 kGy is sufficient for control of blueberry insects requiring quarantine certification. Two or three times the minimum dose may, however, be required to assure that the minimum dose is absorbed by all berries during commercial application. Therefore, it is most important to determine the tolerance of berries to irradiation stress. The purpose of this research was to determine the effects of low-dose irradiation on the quality and condition of ‘Brightwell’ and ‘Tifblue’, two major rabbiteye cultivars grown in Georgia. The data were subjected to analysis of variance (P £ 0.05) on a split-block experimental design, with harvest dates for ‘Brightwell’, and randomized sample sets as replications for ‘Tifblue’ berries. The data were tested for the main effect of irradiation dosage on quality attributes

  17. Gamma irradiation as a quarantine treatment for sweet cherries against Queensland fruit fly

    International Nuclear Information System (INIS)

    Jessup, A.J.

    1990-01-01

    The quality of 'Ron's Seedling', 'American Bing', and 'Lambert' sweet cherry drupes was not affected by irradiation doses up to 300 to 1000 gray. Peduncle discoloration increased in 'Ron's Seedling' cherries when irradiated at 600 and 1000 gray. A dose of 75 gray prevented adult eclosion of more than 1300 Queensland fruit fly (Dacus tryoni, Froggatt). Larvae treated at the third instar were the least susceptible to gamma irradiation. The results indicated that gamma irradiation is a feasible quarantine treatment against D. tryoni without impairment to the quality of cherries

  18. Gamma irradiation as a quarantine treatment for carambolas infested with Caribbean fruit flies

    International Nuclear Information System (INIS)

    Gould, W.P.; Windeguth, D.L. von

    1991-01-01

    Carambolas infested with the Caribbean fruit fly Anastrepha suspensa (Loew), eggs and larvae were exposed to ionizing gamma radiation. Probit 9 was estimated to be 22.95 Gy (95% fiducial limits 16.68 Gy - 49.73 Gy). Over 100,000 immature A. suspensa infesting carambolas were treated at 50 Gy with no adult survivors. This dose did not cause any observable damage to the fruit. The 50 Gy dose satisfies quarantine requirements for treatment of fruits exposed from fruit fly infested areas. (author) [es

  19. Development of RT-PCR and Nested PCR for Detecting Four Quarantine Plant Viruses Belonging to Nepovirus

    Directory of Open Access Journals (Sweden)

    Siwon Lee

    2013-09-01

    Full Text Available For quarantine purpose, we developed the RT- and nested PCR module of Tomato black ring virus (TBRV, Arabis mosaic virus (ArMV, Cherry leafroll virus (CLRV and Grapevine fanleaf virus (GFLV. The PCR modules, developed in this study make diagnosis more convenient and speedy because of same PCR condition. And also, the methods are more accurate because it can check whether the result is contamination or not using the mutation-positive control. We discard or return the 27 cases of Nepovirus infection seed by employing the module past 3 years. This study provides a rapid and useful method for detection of four quarantine plant viruses.

  20. Gamma irradiation a potential quarantine treatment against mites on cut flowers

    International Nuclear Information System (INIS)

    Hamidah Sulaiman; Mohd Shamsudin Osman; Zainon Othman; Mohd Ridzuan Ismail

    2002-01-01

    Cut flower, an important export commodity of Malaysia in international trade, is often subjected to infestation by various pests such as mites, scales and thrips. The use of low ionizing radiation has been suggested as an alternative to methyl bromide fumigation, the current pest disinfestations treatment for cut flower but which is being phased out due to environmental concerns. The criterion for efficacy of radiation as a quarantine treatment will be inability of treated mites to reproduce at a new location rather than causing immediate mortality. A dose of 200 Gy prevented reproduction in female adult of Tetranychus piercie by inducing sterility while a much higher dose of 5 kGy is required to produce instant mortality. Based on the results obtained gamma irradiation of dose range 300-500 Gy may be applied as a quarantine treatment for Tetranycus piercie. However, this dose range is only suitable for chrysanthemum (in 4% sucrose solution) but not roses, carnations and orchids which showed phytotoxic symptoms at dose range of 100-400 Gy. (Author)

  1. Ionizing irradiation quarantine treatment against oriental fruit moth (Lepidoptera: Tortricidae) in ambient and hypoxic atmospheres.

    Science.gov (United States)

    Hallman, Guy J

    2004-06-01

    Oriental fruit moth, Grapholita molesta (Busck), is a pest of many rosaceous temperate fruits, including pomes, Malus spp., and stone fruits, Prunus spp., in much of the world. However, some areas are free of the pest, and shipments of fruit hosts from infested to noninfested areas may be regulated. Current quarantine treatments for oriental fruit moth include methyl bromide fumigation and cold storage for several weeks. Methyl bromide use is being restricted because it is a stratospheric ozone-depleting substance, and alternatives are sought. Cold is not tolerated by many hosts of oriental fruit moth. The objective of this research was to develop irradiation quarantine treatments against the pest under ambient and hypoxic storage conditions because some hosts of oriental fruit moth are stored in hypoxic atmospheres, and hypoxia is known to lessen the effects of irradiation. In ambient atmospheres, no adults emerged from 58,779 fifth instars (the most radiotolerant stage present in fruit) irradiated with a target dose of 200 Gy (195-232 Gy measured). In atmospheres flushed with nitrogen, 5.3% of adults emerged from 44,050 fifth instars irradiated with a target dose of 200 Gy (194-230 Gy measured), but they died at a faster rate than control adults and without laying eggs. A dose of 232 Gy (the maximum recorded when 200 Gy was targeted) is recommended to disinfest any fruit of oriental fruit moth under ambient and hypoxic atmospheres.

  2. Quarantined Apollo 11 Astronauts Addressed by U.S. President Richard Milhous Nixon

    Science.gov (United States)

    1969-01-01

    The Apollo 11 mission, the first manned lunar mission, launched from the Kennedy Space Center, Florida via the Marshall Space Flight Center (MSFC) developed Saturn V launch vehicle on July 16, 1969 and safely returned to Earth on July 24, 1969. Aboard the space craft were astronauts Neil A. Armstrong, commander; Michael Collins, Command Module (CM) pilot; and Edwin E. Aldrin Jr., Lunar Module (LM) pilot. The CM, piloted by Michael Collins remained in a parking orbit around the Moon while the LM, named 'Eagle'', carrying astronauts Neil Armstrong and Edwin Aldrin, landed on the Moon. During 2½ hours of surface exploration, the crew collected 47 pounds of lunar surface material for analysis back on Earth. The recovery operation took place in the Pacific Ocean where Navy para-rescue men recovered the capsule housing the 3-man Apollo 11 crew. The crew was airlifted to safety aboard the U.S.S. Hornet recovery ship, where they were quartered in a Mobile Quarantine Facility (MQF). In this photograph, the U.S.S. Hornet crew looks on as the quarantined Apollo 11 crew is addressed by U.S. President Richard Milhous Nixon via microphone and intercom. The president was aboard the recovery vessel awaiting return of the astronauts. With the success of Apollo 11, the national objective to land men on the Moon and return them safely to Earth had been accomplished.

  3. Detection method for irradiated oriental fruit fly (Dacus Dorsalis) for quarantine purposes

    International Nuclear Information System (INIS)

    Yulo-Nazarea, M.T.; Nato, A.Q.

    1994-01-01

    Radiation is one of the techniques used to effectively rid fresh produce of insect pests and efficacy of radiation dose on food is measured by a probit 9 (99.9968% mortality) quarantine security. Present of suitable biochemical markers for irreversible radiation injury in insect pests could be used as convincing proofs of the efficacy of radiation dose. A biochemical marker (designated Gs-protein) for radiation injury in Oriental fruit fly, Dacus dorsalis, was detected in the SDS-PAGE profile of two-day old pupae and adult insect stage. Gs-protein is not observed in larvae and eggs. An apparent molecular weight of 109 kDa was calculated. A tyrosinase enzyme activity was observed in the soluble fraction of pupal total homogenate and SDS-PAGE-isolated Gs-protein; however, no tyrosinase activity was measured in irradiated sample. The optical absorbance of the soluble fraction from unirradiated pupal total homogenate measured at 360 nm was found to increase with time. From the results of the studies, the apparent loss of Gs-protein in irradiated larvae is likely the result of loss of melanization capability in irradiated larvae which is linked to the absence of tyrosinase enzyme. The data presented seems to establish the role of Gs-protein as a biomarker for gamma-irradiation induced deactivation of pupal development and as a convenient indicator of the effectiveness of gamma radiation as a quarantine treatment. (author). 3 refs.; 3 figs

  4. Mathematical analysis of a lymphatic filariasis model with quarantine and treatment

    Directory of Open Access Journals (Sweden)

    Peter M. Mwamtobe

    2017-03-01

    Full Text Available Abstract Background Lymphatic filariasis is a globally neglected tropical parasitic disease which affects individuals of all ages and leads to an altered lymphatic system and abnormal enlargement of body parts. Methods A mathematical model of lymphatic filariaris with intervention strategies is developed and analyzed. Control of infections is analyzed within the model through medical treatment of infected-acute individuals and quarantine of infected-chronic individuals. Results We derive the effective reproduction number, R 0 , $\\mathcal {R}_{0},$ and its interpretation/investigation suggests that treatment contributes to a reduction in lymphatic filariasis cases faster than quarantine. However, this reduction is greater when the two intervention approaches are applied concurrently. Conclusions Numerical simulations are carried out to monitor the dynamics of the filariasis model sub-populations for various parameter values of the associated reproduction threshold. Lastly, sensitivity analysis on key parameters that drive the disease dynamics is performed in order to identify their relative importance on the disease transmission.

  5. Gamma irradiation as a quarantine treatment against mite (Tetranychidae) on cut flowers

    International Nuclear Information System (INIS)

    Zainon Othman; Mohd Ridzuan Ismail; Hamidah Sulaiman; Mohd Shamsudin Osman

    2000-01-01

    Cut flower, an important export commodity of Malaysia in international trade, is often subjected to infestation by various pests such as mites, scales and thrips. The use of low ionising radiation has been suggested as an alternative to methyl bromide fumigation, the current pest disinfestation treatment for cut flower but which is being phased out due to environmental concerns. The criterion for efficacy of radiation as a quarantine treatment will be the inability of treated mites to reproduce at a new location rather than causing immediate mortality. Irradiating red spider mite Tetranychus piercie at a dose of 300 and 400 Gy produced sterile female adults from irradiated protonymph and deutonymph respectively. A lower dose of 200 Gy induced sterility in female adults developed from the less immature stages of irradiated egg and larva. Deteriorating effects caused by irradiation treatment were reflected in immatures by their reduced emergence rate/mortality in subsequent developmental stages. A dose of 240 Gy prevented reproduction in female adult of T piercie by inducing sterility while a much higher dose of 5 kGy is required to produce instant mortality. Based on the results obtained gamma irradiation of dose range 300-400 Gy may be applied as a quarantine treatment against Tetranychus piercie. However, this dose range is only suitable for chrysanthemum (in 4% sucrose solution) but not roses, carnations and orchids which showed phytotoxic symptoms at dose range of 100-300 Gy

  6. Detection of the quarantine species Thrips palmi by loop-mediated isothermal amplification.

    Directory of Open Access Journals (Sweden)

    Arnika Przybylska

    Full Text Available Thrips palmi (from the order Thysanoptera is a serious insect pest of various crops, including vegetables, fruits and ornamental plants, causing significant economic losses. Its presence constitutes a double threat; not only does T. palmi feed on the plants, it is also a vector for several plant viruses. T. palmi originated in Asia, but has spread to North and Central America, Africa, Oceania and the Caribbean in recent decades. This species has been sporadically noted in Europe and is under quarantine regulation in the European Union. For non-specialists its larval stages are indistinguishable morphologically from another widespread and serious insect pest Frankliniella occidentalis (a non-quarantine species in the European Union as well as other frequently occurring thrips. In this study, we have developed a loop-mediated isothermal amplification protocol to amplify rDNA regions of T. palmi. The results were consistent whether isolated DNA or crushed insects were used as template, indicating that the DNA isolation step could be omitted. The described method is species-specific and sensitive and provides a rapid diagnostic tool to detect T. palmi in the field.

  7. Postharvest irradiation treatment for quarantine control of Drosophila suzukii (Diptera: Drosophilidae) in fresh commodities.

    Science.gov (United States)

    Follett, Peter A; Swedman, Allison; Prices, Donald K

    2014-06-01

    Irradiation is a postharvest quarantine treatment option for exported commodities such as stone fruits and small fruits to prevent movement of the new invasive pest spotted wing drosophila, Drosophila suzukii (Walker) (Diptera: Drosophilidae). The effects of irradiation on larval and pupal development and adult reproduction in D. suzukii were examined. Larvae (first, second, and third instars) and pupae (1-2-d-old, 3-5-d-old, and 7-8-d-old) on diet were irradiated at target doses of 20, 30, 40, and 50 Gy in replicated factorial experiments and survival to the adult stage was recorded. Tolerance to radiation increased with increasing age and developmental stage. Males and females were equally susceptible. A radiation dose of 40 Gy applied to first- and second-instar larvae prevented adult emergence. The late-stage pupa was the most radiation-tolerant stage that occurs in fruit, and individuals irradiated at this stage readily emerged as adults; therefore, prevention of F1 adults was the desired treatment response for large-scale validation tests with naturally infested fruit. In large-scale tests, a radiation dose of 80 Gy applied to late-stage pupae in sweet cherries or grapes resulted in no production of F1 adults in > 33,000 treated individuals, which meets the zero tolerance requirement for market access. A minimum absorbed dose of 80 Gy is recommended for quarantine control of D. suzukii.

  8. Ionization with accelerated high energy electrons as quarantine treatment against Ceratitis capitata (Wiedemann) (Diptera: Tephritidae) in citrus fruits

    International Nuclear Information System (INIS)

    Alonso, M.; Río, M.A. del; Jacas, J.

    2002-01-01

    Ceratitis capitata is a quarantine pest. Spanish citrus exports to countries such as the USA or Japan are subjected to a mandatory quarantine treatment consisting of exposure of fruits to a low temperatures. Some citrus (''Fino'' lemon, ''Fortune'' mandarin) are very sensitive to this kind of treatment and can not be treated this way. Therefore, alternative treatments are necessary. In this study, high energy electrons were investigated as an alternative quarantine treatment against C. capitata in citrus. Survival of the different instars (egg to old pupae) of C. capitata reared in an artificial medium was assessed when exposed to different doses between 0 and 1 kGy. Both pupariation and adult emergence were almost prevented at 0.25 kGy, and no viable adults were obtained at 0.50 kGy. When artificially infested fruits (in both ''Fino'' lemon and ''Fortune'' mandarin) were exposed to 1 kGy, 100% mortality was obtained. Finally, quality (texture, color index, maturity index, juice yield, ethanol and acetaldehyde contents, physiological alterations and organoleptic characteristics) of irradiated (1 kGy) and non irradiated fruit were compared. High energy electron irradiation resulted in unacceptable damage to ''Fortune'' mandarin, but quality of ''Fino'' lemon resulted unaltered even when evaluated one month after irradiation. Therefore high energy electrons could be a useful alternative to cold quarantine treatment for ''Fino'' lemons. (author) [es

  9. 9 CFR 93.103 - Import permits for birds; and reservation fees for space at quarantine facilities maintained by...

    Science.gov (United States)

    2010-01-01

    ...) or any person responsibly connected with the importer's business, any person responsibly connected... the illegal movement of goods within a region, or involving fraud, bribery, extortion, or of any other... business, any person responsibly connected with the privately owned bird quarantine facility intended for...

  10. 7 CFR 305.32 - Irradiation treatment of regulated fruit to be moved interstate from areas quarantined for fruit...

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Irradiation treatment of regulated fruit to be moved... PHYTOSANITARY TREATMENTS Irradiation Treatments § 305.32 Irradiation treatment of regulated fruit to be moved interstate from areas quarantined for fruit flies. Irradiation, carried out in accordance with the provisions...

  11. Evaluation of unmanned aerial vehicles (UAVs) for detection of cattle in the Cattle Fever Tick Permanent Quarantine Zone

    Science.gov (United States)

    An unmanned aerial vehicle was used to capture videos of cattle in pastures to determine the efficiency of this technology for use by Mounted Inspectors in the Permanent Quarantine zone (PQZ) of the Cattle Fever Tick Eradication Program in south Texas along the U.S.-Mexico Border. These videos were ...

  12. Emerging Pathogens Initiative (EPI)

    Data.gov (United States)

    Department of Veterans Affairs — The Emerging Pathogens Initiative (EPI) database contains emerging pathogens information from the local Veterans Affairs Medical Centers (VAMCs). The EPI software...

  13. From quarantine to condoms: shifting policies and problems of HIV control in Cuba.

    Science.gov (United States)

    Hansen, H; Groce, N E

    2001-01-01

    This study reviews HIV prevention in Cuba in light of (1) the liberalization of HIV quarantine, (2) the growth in tourism, and (3) the aggressive system of public health promotion. Sixty-two key informants, including Cubans who are HIV-positive, at risk, or working as health professionals, were interviewed during June and July of 1996. Findings include: (1) there is a common public perception that the government's national HIV screening and contact tracing system obviates the need for individual precaution; and (2) both commercial sex workers and men who have sex with men believe that legal and social forces hinder their indigenous HIV prevention efforts. A well developed system of preventive health care offers the potential for effective HIV prevention. The fact that Cuban officials use the success of their HIV/AIDS control program to promote national pride may retard appropriate changes in their response to currently rising levels of infection.

  14. Microwave Heating as an Alternative Quarantine Method for Disinfestation of Stored Food Grains

    Directory of Open Access Journals (Sweden)

    Ipsita Das

    2013-01-01

    Full Text Available Insects and pests constitute a major threat to food supplies all over the world. Some estimates put the loss of food grains because of infestation to about 40% of the world production. Contemporary disinfestation methods are chemical fumigation, ionizing radiation, controlled atmosphere, conventional hot air treatment, and dielectric heating, that is, radio frequency and microwave energy, and so forth. Though chemical fumigation is being used extensively in stored food grains, regulatory issues, insect resistance, and environmental concerns demand technically effective and environmentally sound quarantine methods. Recent studies have indicated that microwave treatment is a potential means of replacing other techniques because of selective heating, pollution free environment, equivalent or better quality retention, energy minimization, and so forth. The current paper reviews the recent advances in Microwave (MW disinfestation of stored food products and its principle and experimental results from previous studies in order to establish the usefulness of this technology.

  15. Efficacy of irradiation vs thermal methods as quarantine treatments for tropical fruits

    Science.gov (United States)

    Moy, James H.

    1993-07-01

    Ionizing radiation can be effectively applied to fruits and vegetables for several purposes. The most feasible and potentially useful application is probably for disinfestation as a quarantine treatment. All stages of a fruit fly will become sterile upon being irradiated at a minimum dose of 0.15 kGy, the dose level approved by the USDA in January 1989 for treating Hawaiian papayas as a quarantine procedure. This is also well below the dose level approved in April, 1986 by the U.S. Food and Drug Administration for irradiating fresh foods for disinfestation and delaying maturation. Research on irradiation of several tropical fruits such as papayas, mangoes, lychees showed that the chemical, sensory and nutrient qualities of these fruits were well retained at 1.0 kGy, and the fruits would ripen normally or slightly delayed. Since September, 1984, thermal methods used by the papaya industry after ethylene dibromide was banned require treatment time of up to 7 hrs and have caused quality problems. Some of the fruits treated by the hot air or the double-dip hot water method lack flavor and had lumpy texture. The vapor heat method as now used is quite expensive. Irradiation studies have proved the efficacy of the process to disinfest tropical fruits of fruit files. Market test of irradiated Hawaiian papayas in 1987 showed that consumers preferred irradiated papayas over hot water treated papayas by 11 to 1. Thus the only hurdle to overcome in using irradiation for tropical fruits is to convince the consumers that irradiated fruits are wholesome and safe for human consumption, which has been amply proven with scientific data obtained during the past three decades, and further proven with the marketing of irradiated fruits in the U.S.A. since early 1992.

  16. Use of gamma irradiation as a quarantine control method for Frankliniella australis (Morgan) (Thysanoptera: Thripidae)

    International Nuclear Information System (INIS)

    Araya, J.E.; Curkovic, T.; Cayo, A.

    2007-01-01

    The black flower thrips, Frankliniella australis (Morgan), a Chilean species, causes quarantine rejections of fresh fruits for export. Today, fumigation with CH3Br is efficient to avoid these rejections, but is questioned because it affects the ozone layer, irradiation of foods being an alternative. The effect of gamma irradiation was studied in the laboratory on F. australis adults, at dosages of 250, 500, 750, and 1000 Gy, followed by storage at 0-5 deg C to simulate shipping conditions. Mortality immediately after irradiation was low (1.5 to 22.3% at 250 and 1000 Gy, respectively), but increased an hour later (15.8, 33.4, 44.5, and 51.7% with 250, 500, 750, and 1000 Gy, respectively). In this evaluation, mortality with the greatest dosage was significantly larger than with 500 and 250 Gy, while results with 750 and 500 Gy were not different between them but different with the smallest dosage. At 24 hours, mortality with all dosages surpassed 91%, although only that at 1000 Gy was significantly greater than at 250 Gy. At day 4th (96 hours) there was at least 98.8% mortality for the irradiation treatments, with significant differences with the control, which then presented only 12.8% mortality. Using logit regression with results up to day 4, a probit 9 (LD99.9968) for adults was estimated at 188 Gy. This dosage is slightly less to those indicated in the literature for control of other thrips, which may be explained because of the combined use of cold storage, although more studies are necessary of this technology under commercial conditions to verify its applicability for quarantine control of F. australis. (author) [es

  17. Quarantine treatment to Ceratitis capitata (Wied., 1824) (Diptera: Tephritidae) in orange fruits (Citrus sinensis)

    International Nuclear Information System (INIS)

    Albergaria, Nuno Miguel Mendes Soares de

    2005-01-01

    This work was carried out to evaluate the effect of thermal treatments (vapour heat and hot water) and irradiation on Ceratitis capitata eggs and larvae (first, second and third instars), in 'Valencia' oranges; the relation between temperature and exposition time to vapour heat and hot water on fruit fly immature; the relation among the different doses of radiation on fruit fly immature and evaluate the effect of the treatments (thermal treatments and irradiation) on the chemical composition of the fruits. It was evaluated the heat absorption and loose of heat by the fruit. For thermal treatments it was used temperatures of 44 and 46 deg C for 15,30,60, 90 and 120 minutes and a control. For irradiation were used the doses: 10,20, 30, 40, 50, 100, 150 and 200 Gy. By the results obtained it is possible to conclude that: to the control of eggs and larvae (first, second and third instars) the treatment with vapour heat was less efficient than the hot water treatment; the thermal treatments of C. capitata eggs and larvae (first and second and third instars) can be recommended with vapor heat at 46 deg C at 152.2 minutes or with hot water at 46 deg C at 84.8 minutes, achieving the quarantine request; third instar larvae are more tolerant to the thermal and irradiation treatments; the treatment with irradiation can be recommended for quarantine treatment of ali immature stages evaluated with the dose of 72.88 Gy; the dose of 50 Gy causes sterility to the adults emerged from ali immature stages irradiated; treatments do not cause any change in the chemical proprieties in the orange fruits var. 'Valencia'. (author)

  18. Evaluation of ionizing radiation applied to quarantine control of the false grape mite

    International Nuclear Information System (INIS)

    Jadue D, Yael; Vargas O, Claudio Andres.

    1994-01-01

    The objectives of this study were to evaluate effect of three dosages of ionizing radiation in combination with cold storage (0-2 0 C), and the effect of cold storage without irradiation, establishing time curves for eclosion of eggs and mortality of juvenile and adult stages, and adult oviposture. An experimental Cs-137 Brookhaven Portable Cesium Development Irradiator (BPCDI N. 3) at the Chilean Nuclear Energy Commission, located in the La Reina Commune of Santiago, Chile, was used at dosages of 0.500, 1.000, and 1,500 Gy (with a dosage rate of 28.95 Gy/min), combined with pretreatment cold (0-2 0 C) during 24 h, and 15 days of cold storage postirradiation, to simulate the duration of a grape shipment to the U.S., onto 1-4 and 1-4 and ≥ 4 day-old eggs, juveniles and adult stages. The initial stages of development were more susceptible to radiation when combined with cold storage. The mortality of both egg development stages, juveniles and adults, with dosages from 500-1.500; 1.000-1.500; and 1500 Gy, respectively, satisfied the probity 9 (99.9968%) quarantine security level requirement. The few survivors from treated juveniles and adults were unable to continue their cycle, and did not present quarantine risk. All dosages used produced 100% mortality. Apparently, cold storage has a synergic effect when used in combination with radiation. Cold storage of stages not irradiated somewhat the population dynamics. (author). 58 refs, 24 figs, 12 tabs

  19. Factors associated with household transmission of pandemic (H1N1 2009 among self-quarantined patients in Beijing, China.

    Directory of Open Access Journals (Sweden)

    Daitao Zhang

    Full Text Available As the pandemic (H1N1 2009 progressed, the Ministry of Health of China advised cases with mild symptoms to remain home for isolation and observation, which may have increased the risk for infection among other household members. Describing the transmission characteristics of this novel virus is indispensable to effectively controlling the spread of disease; thus, the aim of this study was to assess risk factors associated with household transmission of pandemic H1N1 from self-quarantined patients in Beijing, the capital city of China. A 1:2 case-control study with 54 case households and 108 control households was conducted between August 1 and September 30, 2009 in Beijing. Cases were households with a self-quarantined index patient and a secondary case, while controls were households with a self-quarantined index patient and a close contact. Controls were also matched to cases for sex and age of index case-patient. A structured interview guide was used to collect the data. Conditional logistical models were employed to estimate Odds Ratios (OR with 95% confidence intervals (95% CI. Results indicated that higher education level (OR 0.42; 95% CI 0.22-0.83, sharing room with an index case-patient (OR 3.29; 95%CI 1.23-8.78, daily room ventilation (OR 0.28; 95%CI 0.08-0.93, and hand washing ≥ 3/d (OR 0.71; 95%CI 0.48-0.94 were related to the household transmission of pandemic H1N1 from self-quarantined patients. These results highlight that health education, as well as the quarantine of the index case-patient immediately after infection, frequent hand hygiene, and ventilation are critical to mitigating household spread of pandemic H1N1 virus and minimizing its impact. Household contacts should be educated to promote these in-home practices to contain transmission, particularly when household members are quarantined at home.

  20. Irradiation as a quarantine treatment of arthropod pests. Proceedings of a final research co-ordination meeting

    International Nuclear Information System (INIS)

    1999-05-01

    Fresh horticultural produce from tropical and sub-tropical areas often harbours insects and mites and are quarantined by importing countries. Such commodities cannot gain access to countries which have strict quarantine regulations such as Australia, Japan, New Zealand and the United States of America unless treated by an approved method/procedure to eliminate such pests. Current approved methods include fumigation by methyl bromide, hot water dip, vapour heat, dried heat and irradiation. Methyl bromide is being phased out globally under the Montreal Protocol in view of its strong ozone depleting properties. Countries such as the USA and those of the European Union are required to phase out the production of this chemical by the year 2005. Among other phytosanitary treatments, irradiation appears to have an edge as it is more versatile in controlling various pests and causes insignificant changes in quality of the treated products. The CRP on Irradiation as a Quarantine Treatment of Mites, Nematodes and Insects other than Fruit Flies, in operation between 1992 and 1997, attempted to fill the gap of information on the effectiveness of irradiation against other quarantine pests. Significant data were generated by this CRP to demonstrate that a minimum dose of between 200 and 400 Gy would render a number of non-fruit fly insects and mites sterile, thus meeting quarantine requirements. However, only a limited species of insects and mites were studied. Additional data are required to provide conclusive evidence that such a dose would render most, if not all, species of non-fruit fly insects and mites sterile. Plant parasitic nematodes appear to be resistant to irradiation as the dose required to render them sterile would cause damage to fresh horticultural commodities. Irradiation would be a useful quarantine treatment against this pest only for durable commodities such as pot soil, wood products, etc. This publication presents the research results of the CRP presented

  1. Highlights of Task Force meeting on irradiation as a quarantine treatment, with particular emphasis on insect pests of fresh fruits and vegetables

    International Nuclear Information System (INIS)

    Feliu, E.; Borheg, I. de

    1991-01-01

    This report highlights the discussions and recommendations of the Meeting on Irradiation as a Quarantine Treatment of Fresh Fruits and Vegetables convened 7-11 January 1991 by the International Consultative Group on Food Irradiation. The topics covered had particular emphasis on the irradiation of insect pests of fresh fruits and vegetables. The meeting concluded that low-dose irradiation can be effective as a plant quarantine treatment against fruit flies, as well as against other insect species and mites

  2. Evaluation of predicted Medfly (Ceratitis capitata quarantine length in the United States utilizing degree-day and agent-based models [version 2; referees: 2 approved, 1 approved with reservations

    Directory of Open Access Journals (Sweden)

    Travis Collier

    2018-03-01

    Full Text Available Invasions by pest insects pose a significant threat to agriculture worldwide. In the case of Ceratitis capitata incursions on the US mainland, where it is not officially established, repeated detections are followed by quarantines and treatments to eliminate the invading population. However, it is difficult to accurately set quarantine duration because non-detection may not mean the pest is eliminated. Most programs extend quarantine lengths past the last fly detection by calculating the amount of time required for 3 generations to elapse under a thermal unit accumulation development model (“degree day”. A newer approach is to use an Agent-Based Simulation (ABS to explicitly simulate population demographics and elimination. Here, predicted quarantine lengths for 11 sites in the continental United States are evaluated using both approaches. Results indicate a strong seasonality in quarantine length, with longer predictions in the second half of the year compared with the first; this pattern is more extreme in degree day predictions compared with ABS. Geographically, quarantine lengths increased with latitude, though this was less pronounced under the ABS. Variation in quarantine lengths for particular times and places was dramatically larger for degree day than ABS, generally spiking in the middle of the year for degree day and peaking in second half of the year for ABS. Analysis of 34 C. capitata quarantines from 1975 to 2017 in California shows that, for all but two, quarantines were started in the second half of the year, when degree day quarantine lengths are longest and have the highest uncertainty. For a set of hypothetical outbreaks based on these historical quarantines, the ABS produced significantly shorter quarantines than degree day calculations. Overall, ABS quarantine lengths were more consistent than degree day predictions, avoided unrealistically long values, and captured effects of rare events such as cold snaps.

  3. Export of tropical fruit from Thailand with special reference to quarantine restrictions imposed by certain importing countries

    International Nuclear Information System (INIS)

    Syamananda, R.

    1985-01-01

    The export markets for tropical fruit from Thailand are presently limited to Hong Kong, Singapore, Malaysia, Europe and the Middle East where plant quarantine regulations are not as rigorous as they are in other parts of the world. Attempts are being made to open up new market in Japan, Australia and the United States of America. However, in order to gain access to these markets the produce must be completely free of restricted quarantine pests such as oriental fruit fly (Dacus dorsalis) and melon fruit fly (D. Cucurbitae). Many importing countries to restrict use of chemicals in agricultural produce by fumigation, the use of irradiation technology for pest problems appears to be an acceptable alternative

  4. Analysis and Numerical Simulations of a Stochastic SEIQR Epidemic System with Quarantine-Adjusted Incidence and Imperfect Vaccination

    Directory of Open Access Journals (Sweden)

    Fei Li

    2018-01-01

    Full Text Available This paper considers a high-dimensional stochastic SEIQR (susceptible-exposed-infected-quarantined-recovered epidemic model with quarantine-adjusted incidence and the imperfect vaccination. The main aim of this study is to investigate stochastic effects on the SEIQR epidemic model and obtain its thresholds. We first obtain the sufficient condition for extinction of the disease of the stochastic system. Then, by using the theory of Hasminskii and the Lyapunov analysis methods, we show there is a unique stationary distribution of the stochastic system and it has an ergodic property, which means the infectious disease is prevalent. This implies that the stochastic disturbance is conducive to epidemic diseases control. At last, computer numerical simulations are carried out to illustrate our theoretical results.

  5. Combined postharvest X-ray and cold quarantine treatments against the Mediterranean fruit fly in ‘Clemenules’ mandarins

    International Nuclear Information System (INIS)

    Palou, L.; Río, M. A. del; Marcilla, A.; Alonso, M.; Jacas, J. A.

    2007-01-01

    In the present work, survival of the Mediterranean fruit fly Ceratitis capitata (Wiedemann) (Diptera: Tephritidae) on artificially infested 'Clemenules' clementine mandarins (Citrus reticulata Blanco) was assessed on fruit subjected to integrated quarantine treatments consisting of irradiation with X-rays at doses of 0 (control), 30, 54, and 164 Gy followed by exposure to 1 deg C for 0 (control), 3, 6, 9, or 12 days. Additionally, physico-chemical (rind color, firmness, and physiological disorders, soluble solids concentration, titratable acidity, maturity index, juice yield, and ethanol and acetaldehyde content) and sensory (sweetness, acidity, sensory maturity index, off-flavors, and mandarin-like flavor) fruit quality of 'Clemenules' clementines were assessed on X-irradiated fruit exposed to 1 deg C for 0 (control), 6, or 12 days. Complete insect mortality with no negative effects on fruit quality after 7 days at 20 deg C of shelf life was obtained on clementines firstly X-irradiated at 30 Gy and subsequently exposed to 1 deg C for 2 days. This combination of treatments considerably reduced quarantine time if compared to standard cold quarantine treatments (1.1-2.2 deg C for 14-18 days) and therefore showed promise as a potential commercial treatment for Spanish citrus exports [es

  6. Heat shock and gamma radiation in the quarantine process of Papaya CV. Solo(Carica papaya L.)

    Energy Technology Data Exchange (ETDEWEB)

    Pimentel, Rodrigo M.A.; Walder, Julio M.M. [Centro de Energia Nuclear na Agricultura (CENA/USP), Piracicaba, SP (Brazil)]. E-mails: rmapiment@cena.usp.br; jmwalder@cena.usp.br; Marcondes, Yvens E.M. [Universidade Metodista de Piracicaba (UNIMEP), SP (Brazil)]. E-mail: yvensmar@unimep.br

    2007-07-01

    Full text: To export, it is not only necessary to achieve quality standards, but also, quarantine standards. The main function of irradiation is quarantine control of fruit flies, therefore it is necessary to combine with treatments which focus at keeping fruit quality. The objective of this work was the evaluation of the quality of papaya submitted to heat treatment followed by irradiation at quarantine doses. Papayas were selected green and separated in treatments: a) control; irradiation at doses; b) 250, c) 500 Gy; d) hot water at 60 deg C for 30 seconds; and combined to doses e) 250, f) 500 Gy. The papayas were stored at 21 ({+-} 1 deg C) with relative humidity of 85 - 90%, and then after 8 days, they were evaluated by their soluble solid content, pH, titratable acidity, firmness, decay index and internal color. The analysis of mass loss and external color were executed at 0, 2, 4 and 7 days after irradiation. It was observed that in fruits submitted to hot water (d, e, f) there were less decay and in combined treatments (e, f) it was verified higher firmness. In the second day, irradiated treatments (b, c, e, f) were more yellow than the others. As to the other parameters evaluated, there were no differences between treatments (author)

  7. Electron beam irradiation: a technology for quarantine disinfestation of green gram seeds against Callsobruchus maculatus

    International Nuclear Information System (INIS)

    Bhalla, Shashi; Srinivasan, K.; Singh, Subadas; Thakur, Manju; Sharma, S.K.; Pramod, R.; Dwivedi, J.; Bapna, S.C.

    2010-01-01

    Green gram (Vigna radiata (L.) Wilkzec) an important legume crop in India is grown in 33.4 lakh hectares. India accounts for ∼ 60% of the world's green gram area but contributes only 47% of its production. Major constraint in storage is the pulse beetle Callosobruchus maculatus Fab. (Coleoptera: Bruchidae), which may cause damage upto 100%. It is widespread throughout tropics and sub-tropics with wide host range and also has different strains. Fumigation with methyl bromide (MB) has been the most widely applied management practice for its control. However, the ozone depleting effect of MB has led to restrictions in its use. Therefore, there is a need for an alternative strategy for controlling the pests. Irradiation, an approved technology by International Plant Protection Convention, seems to be a viable non-chemical, residue-free strategy. Therefore, present studies were conducted to see the efficacy of electron beam (EB) irradiation as quarantine disinfestation treatment against green gram seeds infested with different stages of the target pest, C. maculatus

  8. DNA diagnostics to identify internal feeders (Lepidoptera: Tortricidae) of pome fruits of quarantine importance.

    Science.gov (United States)

    Barcenas, N M; Unruh, T R; Neven, L G

    2005-04-01

    A diagnostic polymerase chain reaction (PCR) method is presented for differentiating among the North American internal apple-feeding pests codling moth, Cydia pomonella (L.); oriental fruit moth, Grapholita molesta (Busck); lesser appleworm, Grapholita prunivora (Walsh); and cherry fruitworm, Grapholita packardi Zeller. An approximately 470-bp fragment of mitochondrial cytochrome oxidase subunit I (COI) was sequenced in three to six specimens of each species. Consistent and diagnostic differences were observed among the species in two regions of COI from which forward and reverse primers were designed to amplify a 112-116-bp segment of the gene. The primer sets were used to selectively amplify DNA from specimens of diverse geographic origin for each corresponding target species. Protocols were adapted for conventional and quantitative PCR, the latter being substantially faster. The method was validated as a decision-making tool for quarantine identifications for Mexico by representatives of their phytosanitary agency (Sanidad Vegetal). The method can facilitate identification of intercepted internal feeding Lepidoptera in apple and pear for many other importing nations.

  9. Possibility in application of electron beam irradiation to plant quarantine of cut flowers

    International Nuclear Information System (INIS)

    Tanabe, Kazuo

    1994-01-01

    For the purpose of developing new quarantine procedure alternative to fumigation, electron beam irradiation was examined in the disinfestation of arthroped pests that infest cut flowers. Immature and adult two-spotted spider mites, Tetranychus urticae, which is a typical pest in horticulture due to high fertility, parthenogenesis and chemical resistance, were irradiated at a Van de graaf electron accelerator (2.5 MeV) at 0.2 - 1.4 kGy. They decreased radiosensitivity with aging. Female was much more tolerant than male throughout their life. Irradiation controlled the fertility of both sexes, and also feeding and behavioral activities. Cut flowers irradiated with the Dynamitron accelerator (5 MeV) showed various responses according to species, cultivars and tissues of plants. Carnations, tulips and gladioluses were tolerant in disinfesting or sterilizing, but some cultivars of chrysanthemum and rose showed the symptom of injury, in which flowering was delayed at low dose, and the failure of flowering and the chlorosis of leaves occurred at high dose. Floral organs were much more sensitive to radiation than others. Sensitive plants also showed the reduced production of ethylene. (K.I.)

  10. Gamma irradiation as a quarantine treatment for Neoleucinodes elegantalis in tomato fruit

    International Nuclear Information System (INIS)

    Costa, Helbert S.F.; Fanaro, Gustavo B.; Araujo, Michel M.; Santillo, Amanda G.; Villavicencio, Anna Lucia C.H.; Faria, Jose Tadeu de; Arthur, Valter

    2009-01-01

    In Brazil the tomato-fruit-borer is responsible up to 45% for the loss of the production. The objective of the present report is evaluate the effects of gamma radiation ( 60 Co) on life cycle (eggs and larvae) of Neoleucinodes elegantalis in tomato fruits. The insects were irradiated at doses of 0 (control), 50, 100, 150, 200, 250, 300 and 400 Gy, in a Gammacell 220 source at dose rate of 1.4 kGy/h. Each treatment consists of four repetitions containing 10 insects, totaling 50 insects. After irradiation, the insects were maintained under controlled conditions of 25±3 deg C and relative humidity from 65 to 75%. The evaluations were done daily, counted the number of died insects, eggs and emerged larvae. With the obtained results, we could determine the lethal and sterilizing doses for all phases of cycle life in N. elegantalis for a possible quarantine treatment to export tomato fruits. These results permit conclude that the dose capable to avoid further development of stage of eggs and larvae were doses of 100 and 200 Gy. (author)

  11. Possibility in application of electron beam irradiation to plant quarantine of cut flowers

    Energy Technology Data Exchange (ETDEWEB)

    Tanabe, Kazuo [Ministry of Agriculture, Forestry and Fisheries, Yokohama (Japan). Yokohama Plant Protection Station

    1994-12-31

    For the purpose of developing new quarantine procedure alternative to fumigation, electron beam irradiation was examined in the disinfestation of arthroped pests that infest cut flowers. Immature and adult two-spotted spider mites, Tetranychus urticae, which is a typical pest in horticulture due to high fertility, parthenogenesis and chemical resistance, were irradiated at a Van de graaf electron accelerator (2.5 MeV) at 0.2 - 1.4 kGy. They decreased radiosensitivity with aging. Female was much more tolerant than male throughout their life. Irradiation controlled the fertility of both sexes, and also feeding and behavioral activities. Cut flowers irradiated with the Dynamitron accelerator (5 MeV) showed various responses according to species, cultivars and tissues of plants. Carnations, tulips and gladioluses were tolerant in disinfesting or sterilizing, but some cultivars of chrysanthemum and rose showed the symptom of injury, in which flowering was delayed at low dose, and the failure of flowering and the chlorosis of leaves occurred at high dose. Floral organs were much more sensitive to radiation than others. Sensitive plants also showed the reduced production of ethylene. (K.I.).

  12. Humanitarian quarantine in practice: medicine, religion and leprosy in New Caledonia.

    Science.gov (United States)

    Sykes, Ingrid J

    2017-12-01

    Medicine and religion worked in close synchronisation during the leprosy outbreak of New Caledonia (1890-1950). Once isolation of leprosy-affected people became mandatory doctors and missionaries came together to promote a particular form of medical practice that tied charitable zeal with cutting-edge medical research, developing a sophisticated set of medical practices that catered for the soul as well as the body. Such practices went hand-in-hand with ideas developed by doctors in the earlier stages of the epidemic about the way in which the disease had entered the Kanak (local Melanesian) population. Doctors and missionaries admitted that immoral colonial channels had upset the delicate balance of local social and biological rhythms. Yet they also believed that the highly contagious nature of the outbreak was linked to the inferior state of Kanak. This paper aims to highlight the way in which the leprosaria system in New Caledonia represented a double-edged moral high-ground within the French medical colonial narrative. It tracks the complex way in which emotionally charged arguments about contagion, science and spirituality constructed an ideology of humanitarian quarantine which was used to justify a highly aggressive form of medical biocontrol.

  13. Management of invading pathogens should be informed by epidemiology rather than administrative boundaries.

    Science.gov (United States)

    Thompson, Robin N; Cobb, Richard C; Gilligan, Christopher A; Cunniffe, Nik J

    2016-03-24

    Plant and animal disease outbreaks have significant ecological and economic impacts. The spatial extent of control is often informed solely by administrative geography - for example, quarantine of an entire county or state once an invading disease is detected - with little regard for pathogen epidemiology. We present a stochastic model for the spread of a plant pathogen that couples spread in the natural environment and transmission via the nursery trade, and use it to illustrate that control deployed according to administrative boundaries is almost always sub-optimal. We use sudden oak death (caused by Phytophthora ramorum ) in mixed forests in California as motivation for our study, since the decision as to whether or not to deploy plant trade quarantine is currently undertaken on a county-by-county basis for that system. However, our key conclusion is applicable more generally: basing management of any disease entirely upon administrative borders does not balance the cost of control with the possible economic and ecological costs of further spread in the optimal fashion.

  14. Results of the EU Project QBOL, Focusing on DNA Barcoding of Quarantine Organisms, Added to an International Database (Q-Bank) on Identification of Plant Quarantine Pathogens and Relatives

    NARCIS (Netherlands)

    Bonants, P.J.M.

    2014-01-01

    The rate of introduction and establishment of damaging plant pests and diseases has increased steadily over the last century as a result of expanding globalisation of trade in plant material, climate change, EU expansion, and by a recognised decline in the resources supporting plant health

  15. Knowledge, Attitudes, and Practices among Members of Households Actively Monitored or Quarantined to Prevent Transmission of Ebola Virus Disease - Margibi County, Liberia: February-March 2015.

    Science.gov (United States)

    Wilken, Jason A; Pordell, Paran; Goode, Brant; Jarteh, Rachel; Miller, Zayzay; Saygar, Benjamin G; Maximore, Leroy; Borbor, Watta M; Carmue, Moses; Walker, Gregory W; Yeiah, Adolphus

    2017-12-01

    In early 2015, a patient from a cluster of cases of Ebola Virus Disease (EVD) in Monrovia, Liberia traveled to a rural village in Margibi County, potentially exposing numerous persons. The patient died in the village and post-mortem testing confirmed Ebola Virus infection. Problem The Margibi County Health Team (CHT; Kakata, Margibi, Liberia) needed to prevent further transmission of EVD within and outside of the affected villages, and they needed to better understand the factors that support or impede compliance with measures to stop the spread of EVD. In February-March 2015, the Margibi CHT instituted a 21-day quarantine and active monitoring for two villages where the patient had contact with numerous residents, and a 21-day active monitoring for five other villages where the patient had possible contact with an unknown number of persons. One contact developed EVD and quarantine was extended an additional 12 days in one village. In April 2015, the Margibi CHT conducted a household-based EVD knowledge, attitudes, and practices (KAP) survey of the seven villages. From April 24-29, 2015, interview teams approached every household in the seven villages and collected information on demographics, knowledge of EVD, attitudes about quarantine to prevent the spread of EVD, and their quarantine experiences and practices. Descriptive statistics were calculated. One hundred fifteen interviews were conducted, representing the majority of the households in the seven villages. Most (99%) correctly identified touching an infected person's body fluids and contact with the body of someone who has died from EVD as transmission routes. However, interviewees sometimes incorrectly identified mosquito bites (58%) and airborne spread (32%) as routes of EVD transmission, and 72% incorrectly identified the longest EVD incubation period as ≤seven days. Eight of 16 households in the two quarantined villages (50%) reported times when there was not enough water or food during quarantine

  16. Quarantine treatment by gamma radiation for different development stages of Callosobruchus maculatus in bean Vigna sinensis

    International Nuclear Information System (INIS)

    Arthur, Valter; Machi, André R.; Franco, Suely S.H.

    2017-01-01

    The loss of stored grain caused by insects generates a problem of economic order of importance, due to concern about the increased supply of food for the world population is expanding. Associated with this fact, there is the problem of nutritional deficiency due to lack of protein, especially for the less privileged populations. The use of ionizing radiation in grains and products stored without a doubt can solve the problem of the losses in these products, since it does not induce resistance to insects and leaves no toxic residue in the products, and is considered an effective and safe method. The aim of the experiment was to determine the effect of ionizing radiation from cobalt-60 as a quarantine treatment for the different stages of development of Callosobruchus maculatus (Fabr., 1972) (Coleóptera, Chysomilidae) in bean Vigna sinensis. The experiment was conducted in the laboratory of Radiobiology and Environment CENA/USP, Piracicaba, SP, Brazil. Bean samples infested with eggs, larvae, pre-pupae and pupae C. maculatus, the experiment consisted of 4 replicates for each stage of the insect's life cycle, and each repetition consisted of 20 individuals (eggs, larvae, pre-pupae and pupae), a total of 200 subjects per treatment which were irradiated with doses of 0 (control), 25, 50, 75 and 100 Gy, a source of cobalt-60, Gammabeam-650 type, in a rate dose of 1.3 kGy / h. The experiment was conducted in a room with a relative of 25 ± 2 ° C temperature and humidity of 70 ± 5%. After 35 days of irradiation process were carried out evaluations of the number of insects emerged in each repetition within the treatments. From the results obtained it was concluded that the dose lethal to eggs and larvae was 25 Gy, while for pre-pupae was 50 Gy, to pupae 100 Gy was not sufficient to control the adult emergence. (author)

  17. Quarantine treatment by gamma radiation for different development stages of Callosobruchus maculatus in bean Vigna sinensis

    Energy Technology Data Exchange (ETDEWEB)

    Arthur, Valter; Machi, André R.; Franco, Suely S.H., E-mail: arthur@cena.usp.br [Centro de Energia Nuclear na Agricultura (CENA/USP), Piracicaba, SP (Brazil). laboratório de Radiobiologia e Ambiente; Fontes, Lucia da Silva, E-mail: lsfontes@uol.com.br [Universidade Federal do Piauí (UFPI), Teresina, PI (Brazil). Dept. de Biologia; Harder, Márcia N.C., E-mail: marcia.harder@fatec.sp.gov.br [Faculdade de Tecnologia de Piracicaba (FATEC), SP (Brazil). Dep. Roque Trevisan; Rossi, Rodrigo S.; Arthur, Paula B.; Franco, José G., E-mail: paula.arthur@hotmail.com, E-mail: zegilmar60@gamil.com, E-mail: gilmita@uol.com.br [Instituto de Pesquisas Energéticas e Nucleares (IPEN/CNEN-SP), São Paulo, SP (Brazil)

    2017-07-01

    The loss of stored grain caused by insects generates a problem of economic order of importance, due to concern about the increased supply of food for the world population is expanding. Associated with this fact, there is the problem of nutritional deficiency due to lack of protein, especially for the less privileged populations. The use of ionizing radiation in grains and products stored without a doubt can solve the problem of the losses in these products, since it does not induce resistance to insects and leaves no toxic residue in the products, and is considered an effective and safe method. The aim of the experiment was to determine the effect of ionizing radiation from cobalt-60 as a quarantine treatment for the different stages of development of Callosobruchus maculatus (Fabr., 1972) (Coleóptera, Chysomilidae) in bean Vigna sinensis. The experiment was conducted in the laboratory of Radiobiology and Environment CENA/USP, Piracicaba, SP, Brazil. Bean samples infested with eggs, larvae, pre-pupae and pupae C. maculatus, the experiment consisted of 4 replicates for each stage of the insect's life cycle, and each repetition consisted of 20 individuals (eggs, larvae, pre-pupae and pupae), a total of 200 subjects per treatment which were irradiated with doses of 0 (control), 25, 50, 75 and 100 Gy, a source of cobalt-60, Gammabeam-650 type, in a rate dose of 1.3 kGy / h. The experiment was conducted in a room with a relative of 25 ± 2 ° C temperature and humidity of 70 ± 5%. After 35 days of irradiation process were carried out evaluations of the number of insects emerged in each repetition within the treatments. From the results obtained it was concluded that the dose lethal to eggs and larvae was 25 Gy, while for pre-pupae was 50 Gy, to pupae 100 Gy was not sufficient to control the adult emergence. (author)

  18. Airport sentinel surveillance and entry quarantine for dengue infections following a fever screening program in Taiwan.

    Science.gov (United States)

    Kuan, Mei-Mei; Chang, Feng-Yee

    2012-08-06

    Dengue has not reached an endemic status in Taiwan; nevertheless, we have implemented a fever screening program at airports for the early detection of febrile passengers with a dengue infection. This study is intended to assess the performance of the airport screening procedures for dengue infection. We analyzed data from the national surveillance system of the Taiwan Centers for Disease Control. We included the imported dengue cases reported by sentinel airports and clinics as well as the domestic cases from 2007-2010. Approximately 44.9% (95%CI: 35.73-54.13%) of the confirmed imported dengue cases with an apparent symptom (febrile) in the viremic stage were detected via the airport fever screening program, with an estimated positive predictive value of 2.36% (95% CI: 0.96- 3.75%) and a negative predictive value > 99.99%. Fluctuations in the number of the symptomatic imported dengue cases identified in the airports (X) were associated with the total number of imported dengue cases (Y) based on a regression analysis of a biweekly surveillance (i.e., n = 104, R(2)(X:Y) = 0.61, P airports examined in this study indicated some limitations of the fever screening program for the prevention of importation. The screening program could assist in the rapid triage for self-quarantine of some symptomatic dengue cases that were in the viremic stage at the borders and contribute to active sentinel surveillance; however, the blocking of viral transmission to susceptible populations (neighbors or family) from all of the viremic travelers, including those with or without symptoms, is critical to prevent dengue epidemics. Therefore, the reinforcement of mosquito bite prevention and household vector control in dengue-endemic or dengue-competent hotspots during an epidemic season is essential and highly recommended.

  19. Applicability of ion mobility spectrometry for detection of quarantine pests in wood

    Science.gov (United States)

    Ewing, K. J.; Sanghera, J.; Myers, S. W.; Ervin, A. M.; Carey, C.; Gleason, G.; Mosser, L.; Levy, L.; Hennessey, M. K.; Bulluck, R.

    2016-05-01

    Visual inspection is the most commonly used method for detecting quarantine pests in agricultural cargo items at ports. For example, solid wood packing material (SWPM) at ports may be a pathway for wood pests and is a frequent item of inspection at ports. The inspection process includes examination of the external surface of the item and often destructive sampling to detect internal pest targets. There are few tools available to inspectors to increase the efficiency of inspection and reduce the labor involved. Ion mobility spectrometry (IMS) has promise as an aid for inspection. Because pests emit volatile organic compounds (VOCs) such as hormone like substances, Ion Mobility Spectrometry (IMS) was investigated for possible utility for detecting pests during inspection. SWPM is a major pest pathway in trade, and fumigation of many kinds of wood, including SWPM, with methyl bromide (MeBr) following a published schedule1 is regularly conducted for phytosanitary reasons prior to shipment to the United States. However, the question remains as to how long the methyl bromide remains in the wood samples after fumigation such that it could act as an interferent to the detection of pest related VOC emissions. This work investigates the capability of ion mobility spectrometry to detect the presence of residual methyl bromide in fumigated maple and poplar wood samples at different times post fumigation up to 118 days after fumigation. Data show that MeBr can be detected in the less dense poplar wood up to 118 days after fumigation while MeBr can be detected in the denser maple wood 55 days after fumigation.

  20. Quarantined Apollo 11 Astronauts Addressed by U.S. President Nixon

    Science.gov (United States)

    1969-01-01

    The Apollo 11 mission, the first manned lunar mission, launched from the Kennedy Space Center, Florida via the Saturn V launch vehicle on July 16, 1969 and safely returned to Earth on July 24, 1969. The Saturn V vehicle was developed by the Marshall Space Flight Center (MSFC) under the direction of Dr. Wernher von Braun. Aboard were Neil A. Armstrong, commander; Michael Collins, Command Module (CM) pilot; and Edwin E. Aldrin Jr., Lunar Module (LM) pilot. The CM, piloted by Michael Collins remained in a parking orbit around the Moon while the LM, named 'Eagle'', carrying astronauts Neil Armstrong and Edwin Aldrin, landed on the Moon. Armstrong was the first human to ever stand on the lunar surface, followed by Edwin (Buzz) Aldrin. During 2½ hours of surface exploration, the crew collected 47 pounds of lunar surface material for analysis back on Earth. The recovery operation took place in the Pacific Ocean where Navy para-rescue men recovered the capsule housing the 3-man Apollo 11 crew. The crew was airlifted by helicopter and taken to safety aboard the U.S.S. Hornet, where they were quartered in a Mobile Quarantine Facility (MQF). Shown here are the Apollo 11 crew members (L to R) Neil Armstrong, Michael Collins, and Edwin Aldrin inside the MQF as U.S. President Richard Milhous Nixon speaks to them via intercom. The president was aboard the recovery vessel awaiting return of the astronauts. With the success of Apollo 11, the national objective to land men on the Moon and return them safely to Earth had been accomplished.

  1. Effect of quarantine treatments on the carbohydrate and organic acid content of mangoes (cv. Tommy Atkins)

    Science.gov (United States)

    Cruz, J. N.; Soares, C. A.; Fabbri, A. D. T.; Cordenunsi, B. R.; Sabato, S. F.

    2012-08-01

    Brazil is one of the largest mango producers and the third largest mango exporter worldwide. Irradiation treatment and its commercial feasibility have been studied in our country to make it possible to develop new markets and, consequently, to compete with the major exporters of mangoes, Mexico and India. This work was designed to compare irradiation treatment with the hot water dip treatment in mangoes cv. Tommy Atkins for export and to verify that the main attributes for acceptance, color and texture, as well as carbohydrate and organic acid contents, were maintained. In this study, the fruit was divided into groups: control, hot water dip-treated (46 °C for 90 min), and irradiation-treated at doses of 0.4 kGy and 1.0 kGy. The fruit was stored at low temperature (11 °C±2) for 14 days and then at room temperature (23 °C±2) until the end of the study. The results indicated that the fruit given a dose of 1.0 kGy remained in a less advanced stage of ripening (stage 3) throughout the storage period, but experienced a greater loss of texture in the beginning of the experiment. It was noted that only the control group had higher levels of citric acid and succinic acid on the last day of the experiment. There were no significant differences in the total sugar content between any treatment groups. Gamma radiation can be used as a quarantine treatment and does not interfere negatively with the quality attributes of mangoes.

  2. Quarantine treatment for Sitophilus zeamais (Coleoptera: Curculionidae) through gamma radiation from Cobalt-60

    International Nuclear Information System (INIS)

    Ramos, Amanda Cristina Oliveira; Potenza, Marcos Roberto

    2009-01-01

    Pests like beetles, moths, fungus and mites normally attack stored products such as grains, spices, flours, brans and tobacco in bale. Among these pests the Sitophilus zeamais is one of the most important pests due its elevated potential of reproduction, infesting a great number of products, inducing great damages. This work had as objective to determine the efficacy of gamma radiation from Cobalt-60 as quarantine treatment for S. zeamais. The insects used in this experiment were reared in maize grains, at the Laboratorio de Artropodes of the Instituto Biologico/SP, on climatic room with 27 ± 2 deg C of temperature and relative humidity of 70 ± 5%. Samples containing 25 adult insects were put in acrylic recipients measuring 2.8cm x 2.8cm. Each treatment had four repetitions, in a total of 100 insects for treatment. They were irradiated with growing doses of gamma radiation: 0 (control); 0,25; 0,5; 0,75; 1,0; 1,25; 1,5; 1,75; 2,0; 2,25 2,5; 2,75; 3,0; 3,5 e 4,0 kGy, in a experimental irradiator of Cobalt-60, model Gammacell-220, located at the Centro de Tecnologia da Radiacoes - CTR of the Instituto de Pesquisas Energeticas e Nucleares - IPEN/CNEN/SP. After irradiation, the samples were transferred to plastic recipients measuring 3,5cm x 10cm, with perforated lids (to allow gaseous exchanges). After the irradiation the samples were kept in climatic room (27 ± 2 deg C and 70 ± 5%). The mortality of insects was evaluated 1 hour after the irradiation and also on the next 7 days. By the results obtained we can conclude that was the dose of 2.75 kGy that induced the immediate mortality for adult insects of the specie S. zeamais. (author)

  3. Quarantine treatment for Sitophilus zeamais (Coleoptera: Curculionidae) through gamma radiation from Cobalt-60

    Energy Technology Data Exchange (ETDEWEB)

    Ramos, Amanda Cristina Oliveira, E-mail: amandaramos@usp.b [Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP), Sao Paulo, SP (Brazil); Potenza, Marcos Roberto, E-mail: potenza@biologico.sp.gov.b [Instituto Biologico de Sao Paulo, Sao Paulo, SP (Brazil). Centro de Pesquisa e Desenvolvimento de Sanidade Vegetal; Arthur, Valter, E-mail: varthur@cena.usp.b [Centro de Energia Nuclear na Agricultura (CENA/USP), Piracicaba, SP (Brazil)

    2009-07-01

    Pests like beetles, moths, fungus and mites normally attack stored products such as grains, spices, flours, brans and tobacco in bale. Among these pests the Sitophilus zeamais is one of the most important pests due its elevated potential of reproduction, infesting a great number of products, inducing great damages. This work had as objective to determine the efficacy of gamma radiation from Cobalt-60 as quarantine treatment for S. zeamais. The insects used in this experiment were reared in maize grains, at the Laboratorio de Artropodes of the Instituto Biologico/SP, on climatic room with 27 +- 2 deg C of temperature and relative humidity of 70 +- 5%. Samples containing 25 adult insects were put in acrylic recipients measuring 2.8cm x 2.8cm. Each treatment had four repetitions, in a total of 100 insects for treatment. They were irradiated with growing doses of gamma radiation: 0 (control); 0,25; 0,5; 0,75; 1,0; 1,25; 1,5; 1,75; 2,0; 2,25 2,5; 2,75; 3,0; 3,5 e 4,0 kGy, in a experimental irradiator of Cobalt-60, model Gammacell-220, located at the Centro de Tecnologia da Radiacoes - CTR of the Instituto de Pesquisas Energeticas e Nucleares - IPEN/CNEN/SP. After irradiation, the samples were transferred to plastic recipients measuring 3,5cm x 10cm, with perforated lids (to allow gaseous exchanges). After the irradiation the samples were kept in climatic room (27 +- 2 deg C and 70 +- 5%). The mortality of insects was evaluated 1 hour after the irradiation and also on the next 7 days. By the results obtained we can conclude that was the dose of 2.75 kGy that induced the immediate mortality for adult insects of the specie S. zeamais. (author)

  4. Shelf life extension of litchi (Litchi chinensis) and overcoming quarantine barriers to international trade using radiation technology

    International Nuclear Information System (INIS)

    Gautam, Satyendra; Saxena, Sudhanshu; Kumar, Sanjeev; Hajare, Sachin N.; Wadhawan, Surbhi; Mishra, B.B.; More, Varsha S.; Sharma, Arun

    2010-01-01

    Litchi (Litchi chinensis) has a very short shelf life of 2-3 days at ambient temperature limiting its marketability. Gamma radiation processing in combination with low temperature storage was explored as a method to achieve shelf life extension and fulfill quarantine requirement for export during storage physics, biochemical, microbiological, organoleptic, antioxidant and radioprotective properties of two major commercially grown Indian cultivars of litchi, 'Shahi' and 'China', were analysed. Radiation treatment reduced microbial load in a dose dependent manner. Radiation (0.5kGy) treated and low temperature stored fruits retained the 'good' organoleptic rating till 28 days of storage while maintaining other quality attributes. (author)

  5. Planetary quarantine in the solar system. Survival rates of some terrestrial organisms under simulated space conditions by proton irradiation

    Science.gov (United States)

    Koike, J.; Oshima, T.

    We have been studying the survival rates of some species of terrestrial unicellular and multicellular organism (viruses, bacteria, yeasts, fungi, algae, etc.) under simulated interstellar conditions, in connection with planetary quarantine. The interstellar environment in the solar system has been simulated by low temperature, high vacuum (77 K, 4 × 10 -8 torr), and proton irradiation from a Van de Graaff generator. After exposure to a barrage of protons corresponding to about 250 years of irradiation in solar space, tobacco mosaic virus, Bacillus subtilis spores, Staphylococcus aureus, Micrococcus flavus, Aspergillus niger spores, and Clostridium mangenoti spores showed survival rates of 82, 45, 74, 13, 28, and 25%, respectively.

  6. Airport sentinel surveillance and entry quarantine for dengue infections following a fever screening program in Taiwan

    Science.gov (United States)

    2012-01-01

    Background Dengue has not reached an endemic status in Taiwan; nevertheless, we have implemented a fever screening program at airports for the early detection of febrile passengers with a dengue infection. This study is intended to assess the performance of the airport screening procedures for dengue infection. Methods We analyzed data from the national surveillance system of the Taiwan Centers for Disease Control. We included the imported dengue cases reported by sentinel airports and clinics as well as the domestic cases from 2007–2010. Results Approximately 44.9% (95%CI: 35.73-54.13%) of the confirmed imported dengue cases with an apparent symptom (febrile) in the viremic stage were detected via the airport fever screening program, with an estimated positive predictive value of 2.36% (95% CI: 0.96- 3.75%) and a negative predictive value > 99.99%. Fluctuations in the number of the symptomatic imported dengue cases identified in the airports (X) were associated with the total number of imported dengue cases (Y) based on a regression analysis of a biweekly surveillance (i.e., n = 104, R2X:Y = 0.61, P dengue cases (X) with a 1–2 month lead time (t) was in parallel with that of the domestic dengue cases (Y) based on a consecutive 4-year surveillance (i.e., n = 48, R2X(t-1):Y = 0.22, R2X(t-2):Y = 0.31, P dengue at the airports examined in this study indicated some limitations of the fever screening program for the prevention of importation. The screening program could assist in the rapid triage for self-quarantine of some symptomatic dengue cases that were in the viremic stage at the borders and contribute to active sentinel surveillance; however, the blocking of viral transmission to susceptible populations (neighbors or family) from all of the viremic travelers, including those with or without symptoms, is critical to prevent dengue epidemics. Therefore, the reinforcement of mosquito bite prevention and household vector control in

  7. Food-borne pathogens

    International Nuclear Information System (INIS)

    Niemand, J.G.

    1985-01-01

    The Salmonella scare reinforced the importance of never taking chances when it comes to controlling pathogens. The issue has been resolved by radurisation. The article deals with the various pathogens that can effect food and argues the case for radurisation in dealing with them. It also looks at some of the other food products that can be treated using this process

  8. Plant pathogen resistance

    Science.gov (United States)

    Greenberg, Jean T; Jung, Ho Won; Tschaplinski, Timothy

    2012-11-27

    Azelaic acid or its derivatives or analogs induce a robust and a speedier defense response against pathogens in plants. Azelaic acid treatment alone does not induce many of the known defense-related genes but activates a plant's defense signaling upon pathogen exposure.

  9. Potatoes, pathogens and pests

    NARCIS (Netherlands)

    Lazebnik, Jenny

    2017-01-01

    Currently, fungicides are necessary to protect potato crops against late blight, Phytophthora infestans, one of the world’s most damaging crop pathogens. The introgression of plant resistance genes from wild potato species targeted specifically to the late blight pathogen into

  10. Towards a universal influenza vaccine: volunteer virus challenge studies in quarantine to speed the development and subsequent licensing.

    Science.gov (United States)

    Oxford, John S

    2013-08-01

    There are now more than 5 experimental vaccine formulations which induce T and B cell immunity towards the internally situated virus proteins matrix (M1 and M2e) and nucleoprotein (NP), and towards stem and stalk regions of the HA which have a shared antigenic structure amongst many of the 17 influenza A virus sub types. Such 'universal vaccines' could be used, at least in theory, as a prophylactic stockpile vaccine for newly emerged epidemic and novel pandemic influenza A viruses or as a supplement to conventional HA/NA vaccines. My own laboratory has approached the problem from the clinical viewpoint by identifying CD4(+) cells which are present in influenza infected volunteers who resist influenza infection. We have established precisely which peptides in M and NP proteins react with these immune CD4 cells. These experimental vaccines induce immunity in animal models but with a single exception no data have been published on protection against influenza virus infection in humans. The efficacy of the latter vaccine is based on vaccinia virus (MVA) as a carrier and was analyzed in a quarantine unit. Given the absence of induced HI antibody in the new universal vaccines a possible licensing strategy is a virus challenge model in quarantine whereby healthy volunteers can be immunized with the new vaccine and thereafter deliberately infected and clinical signs recorded alongside quantities of virus excreted and compared with unvaccinated controls. © 2013 The British Pharmacological Society.

  11. Investigation of the effects of irradiation for quarantine treatment purposes on food quality and hygiene in citrus fruits

    International Nuclear Information System (INIS)

    2010-01-01

    Mediterranean fruit fly (Ceratitis capitata) is a major problem in citrus production sector in Turkey. In order to overcome this problem, required irradiation doses were investigated for the quarantine treatment for 'Yafa' orange (Citrus sinensis (L) Osb.), 'Star ruby' grapefruit (Citrus paradisi Macf.); 'Satsuma' tangerine (Citrus reticulata Blanco) in this project. Chemical, physical and microbiological properties of unirradiated and irradiated (0.5, 1.0 and 1.5 kGy) fruits were determined in terms of weight loss, water soluble dry matter, pH, titratable acidity, alcohol insoluble pectin, apparent color of fruits, reducing sugar, total carotenoid, flavonoid, vitamin C contents, sensory properties of fruits, total aerob mesophilic bacteria and total yeast and mould counts of fruits. Results showed that, 0.1 kGy gamma irradiation dose is sufficient for effective quarantine treatment against the Mediterranean fruit fly in citrus fruits, low dose irradiation (≤1.0 kGy) applications had no detrimental effects on citrus fruits' quality except tangerines, microbial load of fruits were seriously affected by irradiation at 1.0 kGy. In addition, under this work we noticed that, irradiated citrus fruits could be detected by using DNA comet analysis method.

  12. An assessment of the benefits of yellow Sigatoka (Mycosphaerella musicola control in the Queensland Northern Banana Pest Quarantine Area

    Directory of Open Access Journals (Sweden)

    David Cook

    2013-09-01

    Full Text Available The banana leaf spotting disease yellow Sigatoka is established and actively controlled in Australia through intensive chemical treatments and diseased leaf removal. In the State of Queensland, the State government imposes standards for de-leafing to minimise the risk of the disease spreading in 6 banana pest quarantine areas. Of these, the Northern Banana Pest Quarantine Area is the most significant in terms of banana production. Previous regulations imposed obligations on owners of banana plants within this area to remove leaves from plants with visible spotting on more than 15 per cent of any leaf during the wet season. Recently, this leaf disease threshold has been lowered to 5 per cent. In this paper we examine the likely impact this more-costly regulation will have on the spread of the disease. We estimate that the average net benefit of reducing the diseased leaf threshold is only likely to be $1.4million per year over the next 30 years, expressed as the annualised present value of tightened regulation. This result varies substantially when the timeframe of the analysis is changed, with shorter time frames indicating poorer net returns from the change in protocols. Overall, the benefit of the regulation change is likely to be minor.

  13. Laboratory-confirmed dengue fever and chikungunya fever cases at the Narita Airport Quarantine Station in 2013.

    Science.gov (United States)

    Furuichi, Mieko; Makie, Toshio; Honma, Yasuko; Isoda, Takayoshi; Miyake, Satoru

    2015-01-01

    Fourteen patients were laboratory-confirmed cases of imported infectious diseases at the Narita Airport Quarantine Station in 2013. Blood tests were performed on 283 subjects suspected of having imported infectious diseases. Of these, 11 were diagnosed as having dengue fever (dengue) and 3 as having chikungunya fever (chikungunya) using real-time RT-PCR. The possible countries from which dengue virus infections were contracted were Thailand, Laos, Sri Lanka, and some other countries in Southeast Asia and South Asia. The 3 chikungunya cases were also diagnosed in individuals that returned from Southeast Asia. Most of the patients with dengue had a fever of over 38℃. The other symptoms were generalized fatigue, dull headache, pain behind the eyes, arthralgia, and digestive symptoms. Four of the patients were unaware of any mosquito bites. The information obtained from the confirmed cases showed that it is important to consider both the destination to which individuals travelled and the clinical symptoms, regardless of whether the subjects were aware of mosquito bites. The detection rate of chikungunya at the Quarantine Station was higher than that of dengue in all reported cases in Japan.

  14. Processes for managing pathogens.

    Science.gov (United States)

    Godfree, Alan; Farrell, Joseph

    2005-01-01

    Wastewater contains human, animal, and plant pathogens capable of causing viral, bacterial, or parasitic infections. There are several routes whereby sewage pathogens may affect human health, including direct contact, contamination of food crops, zoonoses, and vectors. The range and numbers of pathogens in municipal wastewater vary with the level of endemic disease in the community, discharges from commercial activities, and seasonal factors. Regulations to control pathogen risk in the United States and Europe arising from land application of biosolids are based on the concept of multiple barriers to the prevention of transmission. The barriers are (i) treatment to reduce pathogen content and vector attraction, (ii) restrictions on crops grown on land to which biosolids have been applied, and (iii) minimum intervals following application and grazing or harvesting. Wastewater treatment reduces number of pathogens in the wastewater by concentrating them with the solids in the sludge. Although some treatment processes are designed specifically to inactivate pathogens, many are not, and the actual mechanisms of microbial inactivation are not fully understood for all processes. Vector attraction is reduced by stabilization (reduction of readily biodegradable material) and/or incorporation immediately following application. Concerns about health risks have renewed interest in the effects of treatment (on pathogens) and advanced treatment methods, and work performed in the United States suggests that Class A pathogen reduction can be achieved less expensively than previously thought. Effective pathogen risk management requires control to the complete chain of sludge treatment, biosolids handling and application, and post-application activities. This may be achieved by adherence to quality management systems based on hazard analysis critical control point (HACCP) principles.

  15. Quarantine cold treatments for Ceratitis capitata and Anastrepha fraterculus (Diptera: Tephritidae) for citrus in Argentina: conclusions after 10 years of research

    International Nuclear Information System (INIS)

    Willink, Eduardo; Gastaminza, Gerardo; Salvatore, Analia; Gramajo, M. Cecilia; Acenolaza, Mariana; Avila, Rosana; Favre, Paola

    2006-01-01

    Argentina has quarantine restrictions in some markets due to the presence of two quarantine fruit fly pests: Ceratitis capitata and Anastrepha fraterculus. One alternative is the use of cold quarantine treatments during transport of the commodities. Since 1996, the Estacion Experimental Agroindustrial Obispo Colombres (EEAOC), Tucuman, Argentina, has developed different cold quarantine treatments for citrus. In the present work we present all the data the EEAOC generated in the last ten years in order to facilitate the development of such cold treatments. Fruit flies were obtained from the colonies reared at EEAOC. Four citrus species were analyzed: lemon, grapefruit, orange and tangerines. Different varieties were analyzed for each fruit species. Sensitivity trials aiming at determine the most tolerant stage as well as to asses if there is any influence of varieties on cold tolerance were performed. Finally we compared the tolerance to cold between the two species. Sensitivity trials showed that mature larvae (L3) are the most tolerant stage for both fruit fly species. There was no effect of the varieties and the two fruit fly species were equally sensible to cold. Our results provide strong evidence in favor of concluding that any cold treatment developed for C. capitata is effective for A. fraterculus. (author)

  16. Quarantine cold treatments for Ceratitis capitata and Anastrepha fraterculus (Diptera: Tephritidae) for citrus in Argentina: conclusions after 10 years of research

    Energy Technology Data Exchange (ETDEWEB)

    Willink, Eduardo; Gastaminza, Gerardo; Salvatore, Analia; Gramajo, M. Cecilia; Acenolaza, Mariana; Avila, Rosana; Favre, Paola, E-mail: ewillink@eeaoc.org.a [Estacion Experimental Agroindustrial Obispo Colombres (EEAOC), Tucuman (Argentina)

    2006-07-01

    Argentina has quarantine restrictions in some markets due to the presence of two quarantine fruit fly pests: Ceratitis capitata and Anastrepha fraterculus. One alternative is the use of cold quarantine treatments during transport of the commodities. Since 1996, the Estacion Experimental Agroindustrial Obispo Colombres (EEAOC), Tucuman, Argentina, has developed different cold quarantine treatments for citrus. In the present work we present all the data the EEAOC generated in the last ten years in order to facilitate the development of such cold treatments. Fruit flies were obtained from the colonies reared at EEAOC. Four citrus species were analyzed: lemon, grapefruit, orange and tangerines. Different varieties were analyzed for each fruit species. Sensitivity trials aiming at determine the most tolerant stage as well as to asses if there is any influence of varieties on cold tolerance were performed. Finally we compared the tolerance to cold between the two species. Sensitivity trials showed that mature larvae (L3) are the most tolerant stage for both fruit fly species. There was no effect of the varieties and the two fruit fly species were equally sensible to cold. Our results provide strong evidence in favor of concluding that any cold treatment developed for C. capitata is effective for A. fraterculus. (author)

  17. Gamma irradiation as a quarantine treatment for spider mites (Acarina: tetranychidae) in horticultural products

    International Nuclear Information System (INIS)

    Ignatowicz, S.; Banasik-Solgala, K.

    1999-01-01

    eggs were found for the carmine spider mite and the two-spotted spider mite, respectively. In general, viability of eggs produced by mites irradiated as young females and old females was similar. The higher the dose of gamma radiation applied to adults of the spider mites, the higher the mortality of offspring during their embryonic development. However, a dose of 0.3 kGy did not cause complete sterility. To determine a sterilizing dose for both sexes, spider mites were irradiated with the following doses: 0.3, 0.31, 0.32, 0.33, 0.34, 0.35, and 0.4 kGy. When mites were treated with 0.30 and 0.31 kGy, a few eggs hatched. Data obtained indicate that a dose of 0.32 kGy is the lowest dose causing complete sterility in the carmine spider mite and the two-spotted spider mite, when both males and females were irradiated. This dosage could be used for irradiation as a quarantine treatment of horticultural products infested with spider mites. (author)

  18. Indicators for waterborne pathogens

    National Research Council Canada - National Science Library

    Committee on Indicators for Waterborne Pathogens; Board on Life Sciences; Water Science and Technology Board; Division on Earth and Life Studies; National Research Council; National Academy of Sciences

    2004-01-01

    ... not practical or feasible to monitor for the complete spectrum of microorganisms that may occur in water, and many known pathogens are difficult to detect directly and reliably in water samples.Â...

  19. Evolution of microbial pathogens

    National Research Council Canada - National Science Library

    DiRita, Victor J; Seifert, H. Steven

    2006-01-01

    ... A. Hogan vvi ■ CONTENTS 8. Evolution of Pathogens in Soil Rachel Muir and Man-Wah Tan / 131 9. Experimental Models of Symbiotic Host-Microbial Relationships: Understanding the Underpinnings of ...

  20. Host–Pathogen Interactions

    NARCIS (Netherlands)

    Smits, M.A.; Schokker, D.J.

    2011-01-01

    The outcome of an infection is determined by numerous interactions between hosts and pathogens occurring at many different biological levels, ranging from molecule to population. To develop new control strategies for infectious diseases in livestock species, appropriate methodologies are needed

  1. Results of the FAO/IAEA program on 'Irradiation as a Quarantine Treatment of Mites, Nematodes and Insects other than Fruit Fly'

    International Nuclear Information System (INIS)

    Ignatowicz, S.

    1998-01-01

    The FAO/IAEA Program on 'Irradiation as a Quarantine Treatment of Mites, Nematodes and Insects other than Fruit Fly' has been implemented in 1992, and lasted up to the end of 1997. The Coordination Research Program put emphasis on the following aspects of research: (1) Determine criteria, e.g. inability to reproduce, for accepting irradiation as a quarantine treatment against quarantine pests; (2) Determine the effete of irradiation on the most resistant stage of these quarantine pests at the time of treatment; (3) Evaluate the quality of agricultural commodities irradiated at 2-3 times the dose(s) required to meet quarantine requirements; (4) Develop method(s) for identifying insects/other pests which were subjected to irradiation at a dose required for quarantine purposes. The followings are the most important achievements of the CRP: Generic dose for sterilization of both males and females of spider mites (Tetranychidae) was determined to be 320 Gy. With regard to insects other than fruit flies, it appears that a minimum dose of 300 Gy would cause either no adult emergence or sterility of most species of insects studied. Radiation doses required to cause complete mortality to various infective stages of plant parasitic nematodes is higher than 6 kGy. The minimum dose required to prevent gall development and reproduction of these nematodes is largely over 2 kGy, which is too high for most fresh plant materials. Thus, irradiation should be considered as an alternative to methyl bromide fumigation to control nematodes in non-perishable materials. While many fresh fruits and vegetables could tolerate radiation doses required for quarantine purposes, the response of various types of cut-flowers to irradiation varied widely. Some cut-flowers and ornamentals such as ferns, phoenix leaf, narcissus, tulips, carnation or red ginger were tolerant to radiation up to 700 Gy and more, others such as chrysanthemum, rose, lily, anthurium, dendrobium, gerbera did not tolerate

  2. Alzheimer's Disease: APP, Gamma Secretase, APOE, CLU, CR1, PICALM, ABCA7, BIN1, CD2AP, CD33, EPHA1, and MS4A2, and Their Relationships with Herpes Simplex, C. Pneumoniae, Other Suspect Pathogens, and the Immune System

    Directory of Open Access Journals (Sweden)

    Chris Carter

    2011-01-01

    Full Text Available Alzheimer's disease susceptibility genes, APP and gamma-secretase, are involved in the herpes simplex life cycle, and that of other suspect pathogens (C. pneumoniae, H. pylori, C. neoformans, B. burgdorferri, P. gingivalis or immune defence. Such pathogens promote beta-amyloid deposition and tau phosphorylation and may thus be causative agents, whose effects are conditioned by genes. The antimicrobial effects of beta-amyloid, the localisation of APP/gamma-secretase in immunocompetent dendritic cells, and gamma secretase cleavage of numerous pathogen receptors suggest that this network is concerned with pathogen disposal, effects which may be abrogated by the presence of beta-amyloid autoantibodies in the elderly. These autoantibodies, as well as those to nerve growth factor and tau, also observed in Alzheimer's disease, may well be antibodies to pathogens, due to homology between human autoantigens and pathogen proteins. NGF or tau antibodies promote beta-amyloid deposition, neurofibrillary tangles, or cholinergic neuronal loss, and, with other autoantibodies, such as anti-ATPase, are potential agents of destruction, whose formation is dictated by sequence homology between pathogen and human proteins, and thus by pathogen strain and human genes. Pathogen elimination in the ageing population and removal of culpable autoantibodies might reduce the incidence and offer hope for a cure in this affliction.

  3. Sentinel trees as a tool to forecast invasions of alien plant pathogens.

    Directory of Open Access Journals (Sweden)

    AnnaMaria Vettraino

    Full Text Available Recent disease outbreaks caused by alien invasive pathogens into European forests posed a serious threat to forest sustainability with relevant environmental and economic effects. Many of the alien tree pathogens recently introduced into Europe were not previously included on any quarantine lists, thus they were not subject to phytosanitary inspections. The identification and description of alien fungi potentially pathogenic to native European flora before their introduction in Europe, is a paramount need in order to limit the risk of invasion and the impact to forest ecosystems. To determine the potential invasive fungi, a sentinel trees plot was established in Fuyang, China, using healthy seedlings of European tree species including Quercus petreae, Q. suber, and Q. ilex. The fungal assemblage associated with symptomatic specimens was studied using the tag-encoded 454 pyrosequencing of the nuclear ribosomal internal transcribed spacer-1 (ITS 1. Taxa with probable Asiatic origin were identified and included plant pathogenic genera. These results indicate that sentinel plants may be a strategic tool to improve the prevention of bioinvasions.

  4. [Human plague and pneumonic plague : pathogenicity, epidemiology, clinical presentations and therapy].

    Science.gov (United States)

    Riehm, Julia M; Löscher, Thomas

    2015-07-01

    Yersinia pestis is a highly pathogenic gram-negative bacterium and the causative agent of human plague. In the last 1500 years and during three dreaded pandemics, millions of people became victims of Justinian's plague, the Black Death, or modern plague. Today, Y. pestis is endemic in natural foci of Asian, African and American countries. Due to its broad dissemination in mammal species and fleas, eradication of the pathogen will not be possible in the near future. In fact, plague is currently classified as a "re-emerging disease". Infection may occur after the bite of an infected flea, but also after oral ingestion or inhalation of the pathogen. The clinical presentations comprise the bubonic and pneumonic form, septicemia, rarely pharyngitis, and meningitis. Most human cases can successfully be treated with antibiotics. However, the high transmission rate and lethality of pneumonic plague require international and mandatory case notification and quarantine of patients. Rapid diagnosis, therapy and barrier nursing are not only crucial for the individual patient but also for the prevention of further spread of the pathogen or of epidemics. Therefore, WHO emergency schedules demand the isolation of cases, identification and surveillance of contacts as well as control of zoonotic reservoir animals and vectors. These sanctions and effective antibiotic treatment usually allow a rapid containment of outbreaks. However, multiple antibiotic resistant strains of Y. pestis have been isolated from patients in the past. So far, no outbreaks with such strains have been reported.

  5. High Throughput, Multiplexed Pathogen Detection Authenticates Plague Waves in Medieval Venice, Italy

    Science.gov (United States)

    Tran, Thi-Nguyen-Ny; Signoli, Michel; Fozzati, Luigi; Aboudharam, Gérard; Raoult, Didier; Drancourt, Michel

    2011-01-01

    Background Historical records suggest that multiple burial sites from the 14th–16th centuries in Venice, Italy, were used during the Black Death and subsequent plague epidemics. Methodology/Principal Findings High throughput, multiplexed real-time PCR detected DNA of seven highly transmissible pathogens in 173 dental pulp specimens collected from 46 graves. Bartonella quintana DNA was identified in five (2.9%) samples, including three from the 16th century and two from the 15th century, and Yersinia pestis DNA was detected in three (1.7%) samples, including two from the 14th century and one from the 16th century. Partial glpD gene sequencing indicated that the detected Y. pestis was the Orientalis biotype. Conclusions These data document for the first time successive plague epidemics in the medieval European city where quarantine was first instituted in the 14th century. PMID:21423736

  6. High throughput, multiplexed pathogen detection authenticates plague waves in medieval Venice, Italy.

    Science.gov (United States)

    Tran, Thi-Nguyen-Ny; Signoli, Michel; Fozzati, Luigi; Aboudharam, Gérard; Raoult, Didier; Drancourt, Michel

    2011-03-10

    Historical records suggest that multiple burial sites from the 14th-16th centuries in Venice, Italy, were used during the Black Death and subsequent plague epidemics. High throughput, multiplexed real-time PCR detected DNA of seven highly transmissible pathogens in 173 dental pulp specimens collected from 46 graves. Bartonella quintana DNA was identified in five (2.9%) samples, including three from the 16th century and two from the 15th century, and Yersinia pestis DNA was detected in three (1.7%) samples, including two from the 14th century and one from the 16th century. Partial glpD gene sequencing indicated that the detected Y. pestis was the Orientalis biotype. These data document for the first time successive plague epidemics in the medieval European city where quarantine was first instituted in the 14th century.

  7. High throughput, multiplexed pathogen detection authenticates plague waves in medieval Venice, Italy.

    Directory of Open Access Journals (Sweden)

    Thi-Nguyen-Ny Tran

    Full Text Available BACKGROUND: Historical records suggest that multiple burial sites from the 14th-16th centuries in Venice, Italy, were used during the Black Death and subsequent plague epidemics. METHODOLOGY/PRINCIPAL FINDINGS: High throughput, multiplexed real-time PCR detected DNA of seven highly transmissible pathogens in 173 dental pulp specimens collected from 46 graves. Bartonella quintana DNA was identified in five (2.9% samples, including three from the 16th century and two from the 15th century, and Yersinia pestis DNA was detected in three (1.7% samples, including two from the 14th century and one from the 16th century. Partial glpD gene sequencing indicated that the detected Y. pestis was the Orientalis biotype. CONCLUSIONS: These data document for the first time successive plague epidemics in the medieval European city where quarantine was first instituted in the 14th century.

  8. Candida albicans pathogenicity mechanisms.

    Science.gov (United States)

    Mayer, François L; Wilson, Duncan; Hube, Bernhard

    2013-02-15

    The polymorphic fungus Candida albicans is a member of the normal human microbiome. In most individuals, C. albicans resides as a lifelong, harmless commensal. Under certain circumstances, however, C. albicans can cause infections that range from superficial infections of the skin to life-threatening systemic infections. Several factors and activities have been identified which contribute to the pathogenic potential of this fungus. Among them are molecules which mediate adhesion to and invasion into host cells, the secretion of hydrolases, the yeast-to-hypha transition, contact sensing and thigmotropism, biofilm formation, phenotypic switching and a range of fitness attributes. Our understanding of when and how these mechanisms and factors contribute to infection has significantly increased during the last years. In addition, novel virulence mechanisms have recently been discovered. In this review we present an update on our current understanding of the pathogenicity mechanisms of this important human pathogen.

  9. Candida albicans pathogenicity mechanisms

    Science.gov (United States)

    Mayer, François L.; Wilson, Duncan; Hube, Bernhard

    2013-01-01

    The polymorphic fungus Candida albicans is a member of the normal human microbiome. In most individuals, C. albicans resides as a lifelong, harmless commensal. Under certain circumstances, however, C. albicans can cause infections that range from superficial infections of the skin to life-threatening systemic infections. Several factors and activities have been identified which contribute to the pathogenic potential of this fungus. Among them are molecules which mediate adhesion to and invasion into host cells, the secretion of hydrolases, the yeast-to-hypha transition, contact sensing and thigmotropism, biofilm formation, phenotypic switching and a range of fitness attributes. Our understanding of when and how these mechanisms and factors contribute to infection has significantly increased during the last years. In addition, novel virulence mechanisms have recently been discovered. In this review we present an update on our current understanding of the pathogenicity mechanisms of this important human pathogen. PMID:23302789

  10. Human pathogen avoidance adaptations

    NARCIS (Netherlands)

    Tybur, J.M.; Lieberman, D.

    2016-01-01

    Over the past few decades, researchers have become increasingly interested in the adaptations guiding the avoidance of disease-causing organisms. Here we discuss the latest developments in this area, including a recently developed information-processing model of the adaptations underlying pathogen

  11. Pathogenicity and virulence

    Science.gov (United States)

    Many pathogenic microorganisms are host-specific in that they parasitize only one or a few animal species. For example, the cause of equine strangles, Streptococcus equi subspecies equi, is essentially limited to infection of horses. Others—certain Salmonella serotypes, for example—have a broad host...

  12. Autophagy in plant pathogenic fungi.

    Science.gov (United States)

    Liu, Xiao-Hong; Xu, Fei; Snyder, John Hugh; Shi, Huan-Bin; Lu, Jian-Ping; Lin, Fu-Cheng

    2016-09-01

    Autophagy is a conserved cellular process that degrades cytoplasmic constituents in vacuoles. Plant pathogenic fungi develop special infection structures and/or secrete a range of enzymes to invade their plant hosts. It has been demonstrated that monitoring autophagy processes can be extremely useful in visualizing the sequence of events leading to pathogenicity of plant pathogenic fungi. In this review, we introduce the molecular mechanisms involved in autophagy. In addition, we explore the relationship between autophagy and pathogenicity in plant pathogenic fungi. Finally, we discuss the various experimental strategies available for use in the study of autophagy in plant pathogenic fungi. Copyright © 2016 Elsevier Ltd. All rights reserved.

  13. Filamentous pathogen effector functions: of pathogens, hosts and microbiomes

    NARCIS (Netherlands)

    Rövenich, H.; Boshoven, J.C.; Thomma, B.

    2014-01-01

    Microorganisms play essential roles in almost every environment on earth. For instance, microbes decompose organic material, or establish symbiotic relationships that range from pathogenic to mutualistic. Symbiotic relationships have been particularly well studied for microbial plant pathogens and

  14. Morphological characterization of several strains of the rice-pathogenic bacterium Burkholderia glumae in North Sumatra

    Science.gov (United States)

    Hasibuan, M.; Safni, I.; Lisnawita; Lubis, K.

    2018-02-01

    Burkholderia glumae is a quarantine seed-borne bacterial pathogen causing panicle blight disease on rice. This pathogen has been detected in some locations in Java, and recently, farmers in North Sumatra have reported rice yield loss with symptoms similar with those on rice infeced by the rice-pathogenic bacterium B. glumae. This research was aimed to isolate several bacterial strains from several rice varieties in various locations in North Sumatra and characterize the morphology of the strains to detect and identify the unknown bacterial strains presumably B. glumae. Several rice seed varieties were collected from Medan and Deli Serdang Districts. The seed samples were extracted, isolated and purified, then grown in semi-selective media PPGA. The morphological characteristics of the bacterial strains were determined including Gram staining, bacterial colony’s and bacterial cell’s morphology. The results showed that of eleven strains isolated, two strains were Gram negative and nine strains were Gram positive. On the basis of colony morphology, all strains had circular form, flat elevation and cream colour while the colony margin varied, i.e. entire and undulate. Most strains had bacillus/rod shape (8 strains) and only 3 strains were coccus.

  15. Development of food preservation and processing techniques by radiation - Quarantine treatment of agricultural products for export and import by gamma irradiation

    Energy Technology Data Exchange (ETDEWEB)

    Kwon, Joong Ho; Kang, H. J.; Chung, H. W.; Roh, M. J. [Kyungbuk National University, Taegu (Korea)

    2000-04-01

    To pre-establish an alternative technique to the toxic fumigant, methyl bromide which is the current quarantine measure of agricultural products for export, some selected agricultural products, such as apple and pear, were subjected to a preliminary study to confirm the comparative effects of gamma irradiation and MeBr fumigant on their disinfestation and quality, thereby preparing the basic data for the practical approach. Current quarantine activities were examined and the related limitations were investigated. Quarantine-related pests were investigated on their radiosensitivity and disinfestation effects by both treatments. The pests in apple and pear, Tetranychus urticae Koch, Panonychus ulmis Koch revealed a 100% mortality at around 17 days after irradiation of 3 kGy but it was too high dose for apple and pear. Tetranychus urticae Koch, Panonychus ulmi Koch from both apple and pear showed an increased mortality when exposed to 1 {approx} 2 kGy irradiation, resulting in apparent mortality 1 month later. 1 {approx} 2 kGy irradiation could be recommended for apple and pear. Current fumigation was perfect in its disinfesting capability, but it caused the detrimental effects on physical quality of agricultural produce. Whereas, irradiation doses suitable for controlling the pests did not induce any significant changes in the quality of the samples. 40 refs., 64 figs., 160 tabs. (Author)

  16. “An Egyptian Infection”: War, Plague and the Quarantines of the English East India Company at Madras and Bombay, 1802

    Directory of Open Access Journals (Sweden)

    Aparna Nair

    2009-12-01

    Full Text Available By the end of the eighteenth century, the English East India Company (EEIC had established political and economic control over extensive tracts of land in South Asia and had emerged as the dominant regional power. The growing numbers of the EEIC’s mercenary army were often utilized by the British government in military conflicts across the world. At the end of the eighteenth century, as several powers battled over control of Egypt, the EEIC’s army was also called in to assist the Royal forces. But all foreign armies in Egypt were soon confronted by the spectre of plague epidemics. This paper explores how exactly the British handled the threat of plague in Egypt and as the EEIC armies returned to Madras and Bombay. This transnational account of plague and quarantine policy highlights the controversies and tensions over the policy of quarantine within medicine in England and explores how these conflicts played out in the quarantines established in India by the EEIC’s nascent Empire.

  17. Sustainable Management of Plant Quarantine Pests: The Case of Olive Quick Decline Syndrome

    Directory of Open Access Journals (Sweden)

    Andrea Luvisi

    2017-04-01

    Full Text Available The disease outbreak of Xylella fastidiosa subsp. pauca strain CoDiRO (Complesso del Disseccamento Rapido dell’Olivo in Salento (Apulia, South Italy associated with severe cases of olive quick decline syndrome may represent not just a new disease paradigm, but a challenge for policy formulation and science communication in plant pathology. Plant health management can be achieved by applying a technocratic model, in which objective science is thought to directly inform policy-making, or via decisionistic or inclusive models, in which scientific considerations drive risk assessment. Each could be applied to X. fastidiosa and CoDiRO strain management, thanks to consistent literature related to pathogen/host interactions, hosts, vectors, and diagnostic tools, reviewed here. However, consensus among stakeholders seems to be necessary in order to avoid plant health management failures or gridlocks, due to environmental, economic, and social implications in the X. fastidiosa threat. Here we discuss the role of consensus in building scientific opinion, reporting different approaches of governance after severe disease outbreaks in Europe. These case studies, and the available risk analysis for Xylella strains, should drive policy formulations towards more cooperative networks.

  18. Immunological surveillance in a pseudorabies quarantined herd using gilts and their progeny as sentinels.

    Science.gov (United States)

    Williams, P P; Sacks, J M; Yang, P C; Pirtle, E C; Erickson, G A; Beran, G W

    1989-01-01

    Specific pathogen free gilts and their progeny were evaluated to use as sentinels in a pseudorabies virus (PRV) infected herd by immunologically monitoring for PRV seroconversions. Time intervals targeted were pre- and post-PRV vaccinations, herd exposure, and farrowing to finishing. Post-PRV vaccinations, gilts showed low PRV lymphocyte stimulation and humoral responses. Following herd exposure, control gilts PRV seroconverted and PRV vaccinated gilts increased (2 to 4 times) in virus neutralization (VN) titers. Sixty-seven percent (4/6) of the progeny from a control gilt were PRV seropositive at finishing. Progeny from PRV vaccinated gilts were depleted of passive immunity by week 7, and were seronegative until week 9. At finishing 47% (14/30) of them were PRV seropositive indicating exposure to PRV. The VN test was not sensitive enough to detect weak positive serums, noted as positives by latex agglutination (LA) test, ELISA, and Western blots. The gilts and progeny detected PRV, respectively, in the herd housing quarters and in the farrow to finish facilities. A strategy for future sentinel experimental surveillances using primarily the LA test is proposed.

  19. Gamma radiation use as a quarantine treatment alternative for cut flowers

    International Nuclear Information System (INIS)

    Kikuchi, Olivia Kimiko

    1999-01-01

    Methyl bromide is a broad spectrum pesticide to control insects, nematodes, weeds, pathogens and rodents It is effective to commodity treatment designed for exportation/importation, but is also toxic for human being. Besides, it is an ozone layer depleting substance and many countries are interested in finding other less damaging alternatives. The methyl bromide shall be banned until 2015 and one promising alternative is the radiation. It can be effective for some vegetables, like fresh cut flowers. The tolerance to gamma radiation was observed in some cut flowers. Dianthus (Caryophyllaceae), Gypsophyla (Caryophyllaceae), Gomphrena (Amarantaceae), Celosia (Amarantaceae) and Narcissus (Amaryllidaceae) were tolerant to 750 Gy. Heliconia and Strelitzia (Musaceae) were not tolerant, presenting a severe browning of the colored sepals. Anthurium (Araceae) was also sensitive to 750 Gy, presenting browning of the spike, discoloration and black spots on the sepals. The radiation inhibited the bud opening of Hemerocallis (Liliaceae) and Gladiolus (Iridaceae). Gerbera (Compositae) and Callistemon (Myrtaceae) wilted before the control flowers. Helianthus (Compositae) leaves wilted before the flowers because of the radiation. (author)

  20. Candida albicans pathogenicity mechanisms

    OpenAIRE

    Mayer, Fran?ois L.; Wilson, Duncan; Hube, Bernhard

    2013-01-01

    The polymorphic fungus Candida albicans is a member of the normal human microbiome. In most individuals, C. albicans resides as a lifelong, harmless commensal. Under certain circumstances, however, C. albicans can cause infections that range from superficial infections of the skin to life-threatening systemic infections. Several factors and activities have been identified which contribute to the pathogenic potential of this fungus. Among them are molecules which mediate adhesion to and invasi...

  1. Multiplex detection of agricultural pathogens

    Science.gov (United States)

    Siezak, Thomas R.; Gardner, Shea; Torres, Clinton; Vitalis, Elizabeth; Lenhoff, Raymond J.

    2013-01-15

    Described are kits and methods useful for detection of agricultural pathogens in a sample. Genomic sequence information from agricultural pathogens was analyzed to identify signature sequences, e.g., polynucleotide sequences useful for confirming the presence or absence of a pathogen in a sample. Primer and probe sets were designed and optimized for use in a PCR based, multiplexed Luminex assay and/or an array assay to successfully identify the presence or absence of pathogens in a sample.

  2. Agricultural pathogen decontamination technology-reducing the threat of infectious agent spread.

    Energy Technology Data Exchange (ETDEWEB)

    Betty, Rita G.; Bieker, Jill Marie; Tucker, Mark David

    2005-10-01

    Outbreaks of infectious agricultural diseases, whether natural occurring or introduced intentionally, could have catastrophic impacts on the U.S. economy. Examples of such agricultural pathogens include foot and mouth disease (FMD), avian influenza (AI), citrus canker, wheat and soy rust, etc. Current approaches to mitigate the spread of agricultural pathogens include quarantine, development of vaccines for animal diseases, and development of pathogen resistant crop strains in the case of plant diseases. None of these approaches is rapid, and none address the potential persistence of the pathogen in the environment, which could lead to further spread of the agent and damage after quarantine is lifted. Pathogen spread in agricultural environments commonly occurs via transfer on agricultural equipment (transportation trailers, tractors, trucks, combines, etc.), having components made from a broad range of materials (galvanized and painted steel, rubber tires, glass and Plexiglas shields, etc), and under conditions of heavy organic load (mud, soil, feces, litter, etc). A key element of stemming the spread of an outbreak is to ensure complete inactivation of the pathogens in the agricultural environment and on the equipment used in those environments. Through the combination of enhanced agricultural pathogen decontamination chemistry and a validated inactivation verification methodology, important technologies for incorporation as components of a robust response capability will be enabled. Because of the potentially devastating economic impact that could result from the spread of infectious agricultural diseases, the proposed capability components will promote critical infrastructure protection and greater border and food supply security. We investigated and developed agricultural pathogen decontamination technologies to reduce the threat of infectious-agent spread, and thus enhance agricultural biosecurity. Specifically, enhanced detergency versions of the patented

  3. Approach to the resistance of exportation tebo worms when irradiated with gamma ray through a quarantine treatment

    International Nuclear Information System (INIS)

    Silva R, Samy; Zarate S, Herman; Aguirre H, Paulina; Aburto, Patricio

    2009-01-01

    The tebo worms or butterworms (Chilecomadia moorei) are widely used in Chile in fishing, and so are in the international markets although there are some countries, that use these species, to a less extent for preparing food reptiles. Some foreign countries requirements demand, from the exporters, to carry out quarantine treatments related to the sterilization by ionizing energy, however customers need to make sure about their products safety and that is why it is compulsory to establish limits in connection with worms' irradiation resistance. The irradiation effect on a worms sample using doses of 0.3; 0.45; 0.6 and 0.9 kGy was studied macroscopically, after 1 hour, and then 30, 60 and 90 days after the treatment. One of the equipment utilized had a Cobalt 60 source, where as the other one had Cesium 137 irradiators, with a dose rate of 42.7 Gy minute (min) -1 and 37.1 Gy min -1 , respectively. The results concluded that tebo worms can resist more than 3 times the doses suggested by the meta countries without reducing the population drastically, nevertheless it is required to increase the number of worms to be analyzed in order to validate the findings. (author)

  4. Effect of Acetic and Lactic Acid Mixtures on Control of Quarantine Nematode, Bursaphelenchus xylophilus, in Exporting Cymbidium

    Directory of Open Access Journals (Sweden)

    Yunhee Seo

    2014-09-01

    Full Text Available The mixture (MX of acetic acid (AA and lactic acid (LA was examined for its effectiveness in the control of the pine wood nematode Bursaphelenchus xylophilus contaminated in cymbidium culture medium. Nematode mortality in vitro was nearly 100% in AA and MX at the concentrations of 5.0-1.0% (pH 2.6 – 4.2 and in LA only at 5.0% (pH 3.5, but lowered at concentrations of 0.5-0.1% (pH 5.1-6.9 more significantly in LA than AA and MX. MX of most concentrations caused higher nematode mortality than the average response to AA and LA. All treatments of MX (0.5% and 0.25%, fosthiazate (standard and double concentrations and culture dilution of Paenibacillus polymyxa GBR-1 (107colony-forming units/ml reduced significantly the nematode populations in the cymbidium culture medium, compared to non-treatment control, with no significant difference among the treatments. No phytotoxicity occurred in all treatments. pH of the medium with the time after treatment and growths of 2-year-old cymbidium were not significantly different among treatments. Considering the safety and price of the organic acids, use of MX in the processes for culturing cymbidium may be a practically reliable and eco-friendly way in the control of the quarantine nematode in cymbidium.

  5. Evolutionary tools for phytosanitary risk analysis: phylogenetic signal as a predictor of host range of plant pests and pathogens

    Science.gov (United States)

    Gilbert, Gregory S; Magarey, Roger; Suiter, Karl; Webb, Campbell O

    2012-01-01

    Assessing risk from a novel pest or pathogen requires knowing which local plant species are susceptible. Empirical data on the local host range of novel pests are usually lacking, but we know that some pests are more likely to attack closely related plant species than species separated by greater evolutionary distance. We use the Global Pest and Disease Database, an internal database maintained by the United States Department of Agriculture Animal and Plant Health Inspection Service – Plant Protection and Quarantine Division (USDA APHIS-PPQ), to evaluate the strength of the phylogenetic signal in host range for nine major groups of plant pests and pathogens. Eight of nine groups showed significant phylogenetic signal in host range. Additionally, pests and pathogens with more known hosts attacked a phylogenetically broader range of hosts. This suggests that easily obtained data – the number of known hosts and the phylogenetic distance between known hosts and other species of interest – can be used to predict which plant species are likely to be susceptible to a particular pest. This can facilitate rapid assessment of risk from novel pests and pathogens when empirical host range data are not yet available and guide efficient collection of empirical data for risk evaluation. PMID:23346231

  6. Evolutionary tools for phytosanitary risk analysis: phylogenetic signal as a predictor of host range of plant pests and pathogens.

    Science.gov (United States)

    Gilbert, Gregory S; Magarey, Roger; Suiter, Karl; Webb, Campbell O

    2012-12-01

    Assessing risk from a novel pest or pathogen requires knowing which local plant species are susceptible. Empirical data on the local host range of novel pests are usually lacking, but we know that some pests are more likely to attack closely related plant species than species separated by greater evolutionary distance. We use the Global Pest and Disease Database, an internal database maintained by the United States Department of Agriculture Animal and Plant Health Inspection Service - Plant Protection and Quarantine Division (USDA APHIS-PPQ), to evaluate the strength of the phylogenetic signal in host range for nine major groups of plant pests and pathogens. Eight of nine groups showed significant phylogenetic signal in host range. Additionally, pests and pathogens with more known hosts attacked a phylogenetically broader range of hosts. This suggests that easily obtained data - the number of known hosts and the phylogenetic distance between known hosts and other species of interest - can be used to predict which plant species are likely to be susceptible to a particular pest. This can facilitate rapid assessment of risk from novel pests and pathogens when empirical host range data are not yet available and guide efficient collection of empirical data for risk evaluation.

  7. Cryptosporidium Pathogenicity and Virulence

    Science.gov (United States)

    Bouzid, Maha; Chalmers, Rachel M.; Tyler, Kevin M.

    2013-01-01

    Cryptosporidium is a protozoan parasite of medical and veterinary importance that causes gastroenteritis in a variety of vertebrate hosts. Several studies have reported different degrees of pathogenicity and virulence among Cryptosporidium species and isolates of the same species as well as evidence of variation in host susceptibility to infection. The identification and validation of Cryptosporidium virulence factors have been hindered by the renowned difficulties pertaining to the in vitro culture and genetic manipulation of this parasite. Nevertheless, substantial progress has been made in identifying putative virulence factors for Cryptosporidium. This progress has been accelerated since the publication of the Cryptosporidium parvum and C. hominis genomes, with the characterization of over 25 putative virulence factors identified by using a variety of immunological and molecular techniques and which are proposed to be involved in aspects of host-pathogen interactions from adhesion and locomotion to invasion and proliferation. Progress has also been made in the contribution of host factors that are associated with variations in both the severity and risk of infection. Here we provide a review comprised of the current state of knowledge on Cryptosporidium infectivity, pathogenesis, and transmissibility in light of our contemporary understanding of microbial virulence. PMID:23297262

  8. Irradiation as a quarantine treatment against the invader fruit fly (Bactrocera Invadens, Drew) in mangoes (Mangifera Indica L,)

    International Nuclear Information System (INIS)

    Odai, B.T.

    2010-06-01

    The detection of the African invader fly, Bactrocera invadens Drew, Tsuruta and White, in Ghana has led to limitations in the export of mango fruits from Ghana to other countries. The limitations ranging from increased control costs to outright rejection of exports has necessitated a study in the area of quarantine treatment. A study was conducted to ascertain the effectiveness of gamma radiation for control of Bactrocera invadens in fruit destined for export. Pupae were obtained from the incubation of mango fruits collected from various locations. Adults were reared and infestation levels were determined after fruits were exposed to 5, 10, 20 females in different cages. Late instar larvae in fruits were irradiated at 15, 25, 35, 45, 50, 60 and 75 Gy to determine an effective dose for B. invadens. The mortality of the fly was determined at the various doses to obtain a probit 9 figure of 68.06 Gy (rounded to 70 Gy). The confirmatory test for 3050 larvae endorsed the effective dose as the probit 9 dose. Non-infested mature green export grade mango fruits were irradiated with 0, 70 and 150 Gy to determine its effect on ascorbic acid and total acidity content, sweetness, colour, juiciness, sourness, aroma and firmness of the mango fruits. Ascorbic acid and total acidity were not irradiation dependent. Varietal differences (p 0.05) by irradiation. Varietal differences did not affect the acceptability of the sweetness, sourness and colour of the fruits (p>0.05). Storage days significantly affected (p<0.05) the acceptability of all the sensory attributes. (au)

  9. Pathogenic mycoflora on carrot seeds

    Directory of Open Access Journals (Sweden)

    Bogdan Nowicki

    2013-12-01

    Full Text Available Altogether 300 seed samples were collected during 9 years in 8 regions of Poland and the fungi Were isolated and their pathogenicity to carrot seedlings was examined. Alternaria rudicina provcd to be the most important pathogen although. A. alternata was more common. The other important pathogens were Fusarium spp., Phoma spp. and Botrytis cinerea. The infection of carrot seeds by A. radicina should be used as an important criterium in seed quality evaluation.

  10. The pathogenic equine streptococci.

    Science.gov (United States)

    Timoney, John F

    2004-01-01

    Streptococci pathogenic for the horse include S. equi (S. equi subsp. equi), S. zooepidemicus (S. equi subsp. zooepidemicus), S. dysgalactiae subsp. equisimilis and S. pneumoniae capsule Type III. S. equi is a clonal descendent or biovar of an ancestral S. zooepidemicus strain with which it shares greater than 98% DNA homology and therefore expresses many of the same proteins and virulence factors. Rapid progress has been made in identification of virulence factors and proteins uniquely expressed by S. equi. Most of these are expressed either on the bacterial surface or are secreted. Notable examples include the antiphagocytic SeM and the secreted pyrogenic superantigens SePE-I and H. The genomic DNA sequence of S. equi will greatly accelerate identification and characterization of additional virulence factors and vaccine targets. Although it is the most frequently isolated opportunist pyogen of the horse, S. zooepidemicus has been the subject of few contemporary research studies. Variation in the protectively immunogenic SzP proteins has, however, been well characterized. Given its opportunist behavior, studies are urgently needed on regulation of virulence factors such as capsule and proteases. Likewise, information is also very limited on virulence factors and associated gene regulation of S. dysgalactiae subspecies equisimilis. It has recently been shown that equine isolates of Streptococcus pneumoniae are clonal, a feature shared with S. equi. All equine isolates express capsule Type III, are genetically similar, and have deletions in the genes for autolysin and pneumolysin. In summary, the evolving picture of the interaction of the equine pathogenic streptococci and their host is that of multiple virulence factors active at different stages of pathogenesis. The inherent complexity of this interaction suggests that discovery of effective combinations of immunogens from potential targets identified in genomic sequence will be laborious.

  11. Incorporating risk communication into highly pathogenic avian influenza preparedness and response efforts.

    Science.gov (United States)

    Voss, Shauna J; Malladi, Sasidhar; Sampedro, Fernando; Snider, Tim; Goldsmith, Timothy; Hueston, William D; Lauer, Dale C; Halvorson, David A

    2012-12-01

    A highly pathogenic avian influenza (HPAI) outbreak in the United States will initiate a federal emergency response effort that will consist of disease control and eradication efforts, including quarantine and movement control measures. These movement control measures will not only apply to live animals but also to animal products. However, with current egg industry "just-in-time" production practices, limited storage is available to hold eggs. As a result, stop movement orders can have significant unintended negative consequences, including severe disruptions to the food supply chain. Because stakeholders' perceptions of risk vary, waiting to initiate communication efforts until an HPAI event occurs can hinder disease control efforts, including the willingness of producers to comply with the response, and also can affect consumers' demand for the product. A public-private-academic partnership was formed to assess actual risks involved in the movement of egg industry products during an HPAI event through product specific, proactive risk assessments. The risk analysis process engaged a broad representation of stakeholders and promoted effective risk management and communication strategies before an HPAI outbreak event. This multidisciplinary team used the risk assessments in the development of the United States Department of Agriculture, Highly Pathogenic Avian Influenza Secure Egg Supply Plan, a comprehensive response plan that strives to maintain continuity of business. The collaborative approach that was used demonstrates how a proactive risk communication strategy that involves many different stakeholders can be valuable in the development of a foreign animal disease response plan and build working relationships, trust, and understanding.

  12. European apple canker: morphophysiological variability and pathogenicity in isolates of Neonectria ditissima in southern Brazil

    Directory of Open Access Journals (Sweden)

    Jonatas da Silva Campos

    Full Text Available ABSTRACT: European apple canker (EC is caused by Neonectria ditissima, a pathogen officially registered as a quarantine pest in 2012. Thirty-five isolates of N. ditissima of different geographical regions of southern Brazil from apple branches showing symptoms of EC were identified by the specific pair primers Ch1 and Ch2 and analyzed concerning the virulence on Gala apple cultivar and morphophysiological characteristics. The disease symptoms were characterized and the isolates compared based on average mycelium growth (AMG, mycelium growth index (MGI, colony color, conidia type, dimensions and growth on potato dextrose agar (PDA, malt agar (AM, and synthetic SNAY (SN culture media. Nineteen isolates showed the greatest AMG on PDA, forming three growth groups of 35.56 (GI, 52.71 (GII, and 62.67mm (GIII. Seven isolates showed MGI greater than 4.0mm diameter on PDA compared with that on AM and SN. The highest conidia production was on SN, and the predominant colony color in all media was white to beige with central pigmentation of brown and borders colored in shades of beige. There were significant differences among the average dimensions of micro- and macroconidia on PDA, AM, and SN. The pathogenicity was confirmed for all isolates despite of different morphophysiological characteristics. There was no correlation among isolates morphophysiological variability, virulence, and geographical origin.

  13. Introduced pathogens found on ornamentals, strawberry and trees in Finland over the past 20 years

    Directory of Open Access Journals (Sweden)

    A. LILJA

    2008-12-01

    Full Text Available The comparative ease and speed of international trade and travel have enabled or enhanced the spread of pests around the globe. For example, trade in ornamental plants has bolstered the spread of alien Oomycetes such as pathogenic species of Phytophthora. To date, four Phytophthora species have been identified in Finland: P. cactorum on Fragaria x ananassa, Betula pendula and Rhododendron spp., P. plurivora on Rhododendron spp. and Syringa vulgaris, and P. pini and P. ramorum on Rhododendron spp. The ascomycete Colletotrichum acutatum, which was listed as a quarantine pathogen by the European Union until 2009, was introduced in 2000 and can survive in plant debris over two winters in Finland. Positive PCR results have also been obtained from bait plants grown in soil collected from locations where diseased Fragaria x ananassa plants had earlier been destroyed. In the mid-1990s, there was an epidemic of foliar rust caused by the Asian basidiomycete Melampsoridium hiratsukanum on Alnus glutinosa and A. incana. Recently, two ascomycetes that have been introduced are Dothistroma septosporum (responsible for red band needle blight on Pinus sylvestris and Chalara fraxinea (causing ash decline on Fraxinus excelsior.;

  14. Multiplex detection of respiratory pathogens

    Science.gov (United States)

    McBride, Mary [Brentwood, CA; Slezak, Thomas [Livermore, CA; Birch, James M [Albany, CA

    2012-07-31

    Described are kits and methods useful for detection of respiratory pathogens (influenza A (including subtyping capability for H1, H3, H5 and H7 subtypes) influenza B, parainfluenza (type 2), respiratory syncytial virus, and adenovirus) in a sample. Genomic sequence information from the respiratory pathogens was analyzed to identify signature sequences, e.g., polynucleotide sequences useful for confirming the presence or absence of a pathogen in a sample. Primer and probe sets were designed and optimized for use in a PCR based, multiplexed Luminex assay to successfully identify the presence or absence of pathogens in a sample.

  15. Deteksi dan Identifikasi Dickeya sp. sebagai Organisme Pengganggu Tumbuhan Karantina A2 pada Tanaman Kentang di Jawa

    OpenAIRE

    Haerani Haerani; Abdjad Asih Nawangsih; Tri Asmira Damayanti

    2015-01-01

    Erwinia chrysanthemi (currently Dickeya sp.) is one of the A2 quarantine pest that must be concerned of its distribution on potato in Indonesia. The aim of this study is to detect and identify E. chrysanthemi from potato in Java. A total of 400 samples of potato plants showing symptoms of soft rot were obtained from several potato areas in Pangalengan and Garut (West Java), Dieng (Central Java), and Batu-Malang (East Java). Disease incidence was determined by indirect enzyme-linked immunosorb...

  16. Comparative proteomic analysis of pathogenic and non-pathogenic strains from the swine pathogen Mycoplasma hyopneumoniae

    Directory of Open Access Journals (Sweden)

    Klein Cátia S

    2009-12-01

    Full Text Available Abstract Background Mycoplasma hyopneumoniae is a highly infectious swine pathogen and is the causative agent of enzootic pneumonia (EP. Following the previous report of a proteomic survey of the pathogenic 7448 strain of swine pathogen, Mycoplasma hyopneumoniae, we performed comparative protein profiling of three M. hyopneumoniae strains, namely the non-pathogenic J strain and the two pathogenic strains 7448 and 7422. Results In 2DE comparisons, we were able to identify differences in expression levels for 67 proteins, including the overexpression of some cytoadherence-related proteins only in the pathogenic strains. 2DE immunoblot analyses allowed the identification of differential proteolytic cleavage patterns of the P97 adhesin in the three strains. For more comprehensive protein profiling, an LC-MS/MS strategy was used. Overall, 35% of the M. hyopneumoniae genome coding capacity was covered. Partially overlapping profiles of identified proteins were observed in the strains with 81 proteins identified only in one strain and 54 proteins identified in two strains. Abundance analysis of proteins detected in more than one strain demonstrates the relative overexpression of 64 proteins, including the P97 adhesin in the pathogenic strains. Conclusions Our results indicate the physiological differences between the non-pathogenic strain, with its non-infective proliferate lifestyle, and the pathogenic strains, with its constitutive expression of adhesins, which would render the bacterium competent for adhesion and infection prior to host contact.

  17. Ecology of Pathogen Groups: Fungi

    DEFF Research Database (Denmark)

    Hajek, Ann E.; Meyling, Nicolai Vitt

    2018-01-01

    Summary This chapter investigates the recent results of studies of the ecology of fungal pathogens, including ecological insights obtained by implementation of molecular tools. It spans a spectrum of invertebrates as hosts, although emphasis will be on pathogens of terrestrial insects, which have...... been the focus of most ecological research. Some taxa of invertebrate pathogenic fungi have evolved adaptations for utilizing living plants as substrates, and these lifestyles have recently received increased attention from researchers following the initial documentations of such plant associations...... by Beauveria and Metarhizium. This topic has recently been reviewed; the chapter mainly focuses on aspects of ecological relevance, including trophic interactions. Fungal pathogens are used to provide biological control in numerous ways. The primary type of biological control emphasized for fungal pathogens...

  18. The pathogenicity of cytomegalovirus.

    Science.gov (United States)

    Sweet, C

    1999-07-01

    Human cytomegalovirus is ubiquitous, yet causes little illness in immunocompetent individuals. Disease is evident in immunodeficient groups such as neonates, transplant recipients and AIDS patients either following a primary infection or reactivation of a latent infection. Little is known of the mechanisms underlying the pathogenicity of the virus. The recent determination of the nucleotide sequence of both human cytomegalovirus (strain AD169) and murine cytomegalovirus (murine cytomegalovirus strain Smith) has allowed an analysis of the biological importance of several virus genes. Studies with human cytomegalovirus have indicated that many viral genes are non-essential for replication in vitro which are thus assumed to be important in the pathogenesis of the virus. This is being examined in the murine model where the role of the gene and its product in disease can be directly examined in vivo using viral mutants in which the relevant gene has been interrupted or deleted. Current information on the role of cytomegalovirus genes in tissue tropism, immune evasion, latency, reactivation from latency and damage is described.

  19. Deteksi dan Identifikasi Dickeya sp. sebagai Organisme Pengganggu Tumbuhan Karantina A2 pada Tanaman Kentang di Jawa

    Directory of Open Access Journals (Sweden)

    Haerani Haerani

    2015-09-01

    Full Text Available Erwinia chrysanthemi (currently Dickeya sp. is one of the A2 quarantine pest that must be concerned of its distribution on potato in Indonesia. The aim of this study is to detect and identify E. chrysanthemi from potato in Java. A total of 400 samples of potato plants showing symptoms of soft rot were obtained from several potato areas in Pangalengan and Garut (West Java, Dieng (Central Java, and Batu-Malang (East Java. Disease incidence was determined by indirect enzyme-linked immunosorbent assay (I-ELISA using polyclonal antiserum. E.chrysanthemi was isolated from plant samples with positive ELISA results. Furthermore, bacterial isolates were characterized by GEN III OmniLog ID System and PCR using specific primers Ec3F/Ec4R, as well as the universal 16S rRNA primer pair of 27F/1429R. The incidence of E. chrysanthemi based on ELISA was obtained. Based on physiological characters; Gram, catalase, oxidase, and oxidation-fermentation, there were 4 isolates similar to the genus of Erwinia. However, the results of Gen III OmniLog System, PCR, and nucleotide sequences analysis of 16S rRNA confirmed that none of the isolates were identified as E.chrysanthemi. Otherwise, those 4 isolates were identified as Pseudomonas oryzihabitans, Pantoea agglomerans, and Pseudomonas viridiflava. The result of this study indicated that the existence of E. chrysanthemi as an A2 quarantine pest on potato in Java can not be confirmed and remains as an A1 quarantine pest.

  20. Incidence of fruit flies on coffee and citrus and quarantine treatment of citrus fruits by gamma radiation

    International Nuclear Information System (INIS)

    Raga, Adalton

    1996-01-01

    The objective of this study was to evaluate the fruit fly infestation on coffee and citrus, and also to determine gamma radiation doses for immature stages of Ceratitis capitata and Anastrepha fraterculus, in order to satisfy quarantine regulations. Coffee arabica varieties Icatu Vermelho, Catuai Amarelo, Mundo Novo and Sarchimor showed the highest infestation indices (pupa/berry): 0.53; 0,41; 0.33 and 0.36. respectively Icatu Vermelho and Catuai Vermelho showed the highest values of pupa/berry weight (0.49 and 0.39, respectively), and Robusta (Coffea canephora) presented the lowest index (0.01). The following fruit flies were found in coffee berries: C. capitata (76.6%) Anastrepha spp. (7.4%) and Lonchaeidae (17.0%). In area near coffee plantation, fruit fly infestation indices in sweet oranges were of 4.77 larvae/kg and 0.55 larva/fruit. The infestation indices for sweet orange, collected from five regions of the State of Sao Paulo ranged from 0.73 to 7.60 pupa/kg and 0.12 to 1.27 pupa/fruit. The same species of fruit flies were found in oranges. In the case of C. capitata eggs with 24-48 hours old, 20 Gy prevented completely adult emergence (artificial diet and orange). No emergence of adult occurred when C. capitata larvae of third instar were irradiated at 20 Gy in their rearing medium. But at 25 Gy, the number of adults was reduced by 54% and 97% from larval infestation in oranges and grapefruit, respectively. A dose of 30 Gy was required to prevent medfly emergence from third instar larvae in grapefruit. A dose of 15 Gy was required for third instar, to prevent adult emergence of A. fraterculus. No adult emerged from C third instar, to prevent adult emergence of A. fraterculus. No adult emerged from C capitata pre-pupa irradiated at 30 Gy. One medfly adult emerged from pupa (3-4 days after pupating) irradiated at 120 Gy. At the same dose, sixteen A. fraterculus adults emergency from irradiated pupa with 5-6 days old. (author)

  1. Genomics of clostridial pathogens: implication of extrachromosomal elements in pathogenicity.

    Science.gov (United States)

    Brüggemann, Holger

    2005-10-01

    The recently decoded genomes of the major clostridial toxin-producing pathogens Clostridium perfringens, Clostridium tetani, Clostridium botulinum and Clostridium difficile have provided a huge amount of new sequence data. Recent studies have focused on the identification and investigation of pathogenic determinants and the regulatory events governing their expression. The sequence data revealed also the genomic background of virulence genes, as well as the contribution of extrachromosomal elements to a pathogenic phenotype. This has generated new insights in clostridial pathogenesis - and will continue to do so in the future - and has deepened our understanding of the anaerobic lifestyle of clostridial species.

  2. Quarantine as a public health measure against an emerging infectious disease: syphilis in Zurich at the dawn of the modern era (1496–1585

    Directory of Open Access Journals (Sweden)

    Gall, Gabriella Eva Cristina

    2016-06-01

    Full Text Available Syphilis is considered as one of the most devastating sexually transmitted diseases in human history. Based on historical records, the (German for spread through Europe after 1495 and shared symptoms with what we know today as syphilis. Many cities took measures to protect their population. Here, transliterations of archival documents from the 15 and 16 century (provided in the appendix are used to trace the steps taken by the governing authorities in Zurich to deal with this emerging infectious disease. One of the central measures taken by the city was to establish a quarantine facility referred to as the The city doctors, including the well-known physician and naturalist Conrad Gessner, oversaw the obligatory quarantine and treatment of patients with symptoms. Treatment could range from better nutrition, herbal remedies and skin ointments to aggressive heat therapy and “smoking”. Furthermore, the affliction was suspected as a sexually acquired disease, hence prostitutes and infected foreigners were extradited from the city. Meanwhile, the church used its social influence to promote a more “Christian” behavior. In several respects, the public health measures taken in the 16 century against a new and menacing epidemic do not diverge in their basic rationale from approaches used during the 20 century and today.

  3. The origins of the pavilion lazaretto. Quarantine architecture between the 18th and 19th centuries

    Directory of Open Access Journals (Sweden)

    Bonastra, Quim

    2008-06-01

    Full Text Available The model of pavilion lazaretto was built above the scientific basis established during the hospital reform process held in France on the lasts decades of Eighteenth Century. The morphological solutions adopted for the new quarantine taxonomy has not been given by the example borrowed by the new typology of hospital as resulted in this discussion, but by existing quarantine and detention facilities in general. In this paper we will analyse all factors that have influenced in the configuration of this model of lazarettos.

    El modelo de lazareto pabellonario se configuró a partir de las bases científicas establecidas durante el proceso de reforma hospitalaria acaecido en Francia en el último tercio del setecientos. La adopción de soluciones que dieran forma a la nueva tipología cuarentenaria no vino dada precisamente por el ejemplo prestado por los nuevos tipos de hospital resultantes de este debate sino por el de otras instalaciones de cuarentena y, en general, de encierro, ya existentes. En este artículo se analizarán todos los factores que influyeron en la configuración de este modelo de lazaretos.

  4. Overview of incursions of Asian H5N1 subtype highly pathogenic avian influenza virus into Great Britain, 2005-2008.

    Science.gov (United States)

    Alexander, Dennis J; Manvell, Ruth J; Irvine, Richard; Londt, Brandon Z; Cox, Bill; Ceeraz, Vanessa; Banks, Jill; Browna, Ian H

    2010-03-01

    Since 2005 there have been five incursions into Great Britain of highly pathogenic avian influenza (HPAI) viruses of subtype H5N1 related to the ongoing global epizootic. The first incursion occurred in October 2005 in birds held in quarantine after importation from Taiwan. Two incursions related to wild birds: one involved a single dead whooper swan found in March 2006 in the sea off the east coast of Scotland, and the other involved 10 mute swans and a Canada goose found dead over the period extending from late December 2007 to late February 2008 on or close to a swannery on the south coast of England. The other two outbreaks occurred in commercial poultry in January 2007 and November 2007, both in the county of Suffolk. The first of these poultry outbreaks occurred on a large turkey farm, and there was no further spread. The second outbreak occurred on a free-range farm rearing turkeys, ducks, and geese and spread to birds on a second turkey farm that was culled as a dangerous contact. Viruses isolated from these five outbreaks were confirmed to be Asian H5N1 HPAI viruses; the quarantine outbreak was attributed to a clade 2.3 virus and the other four to clade 2.2 viruses. This article describes the outbreaks, their control, and the possible origins of the responsible viruses.

  5. Development of PCR-based detection methods for the quarantine phytopathogen Synchytrium endobioticum, causal agent of wart disease

    NARCIS (Netherlands)

    Boogert, van den P.H.J.F.; Gent-Pelzer, van M.P.E.; Bonants, P.J.M.; Boer, de S.H.; Wander, J.G.N.; Lévesque, C.A.; Leeuwen, van G.C.M.; Baayen, R.P.

    2005-01-01

    Abstract PCR-based methods were developed for the detection and quantification of the potato pathogen Synchytrium endobioticum in soil extracts and in planta. PCR primers, based on the internal transcribed spacer region of the multi-copy gene rDNA were tested for specificity, sensitivity and

  6. Opportunistic Premise Plumbing Pathogens: Increasingly Important Pathogens in Drinking Water

    Directory of Open Access Journals (Sweden)

    Joseph O. Falkinham

    2015-06-01

    Full Text Available Opportunistic premise plumbing pathogens are responsible for a significant number of infections whose origin has been traced to drinking water. These opportunistic pathogens represent an emerging water borne disease problem with a major economic cost of at least $1 billion annually. The common features of this group of waterborne pathogens include: disinfectant-resistance, pipe surface adherence and biofilm formation, growth in amoebae, growth on low organic concentrations, and growth at low oxygen levels. Their emergence is due to the fact that conditions resulting from drinking water treatment select for them. As such, there is a need for novel approaches to reduce exposure to these pathogens. In addition to much-needed research, controls to reduce numbers and human exposure can be instituted independently by utilities and homeowners and hospital- and building-operators.

  7. Opportunistic Premise Plumbing Pathogens: Increasingly Important Pathogens in Drinking Water.

    Science.gov (United States)

    Falkinham, Joseph O; Pruden, Amy; Edwards, Marc

    2015-06-09

    Opportunistic premise plumbing pathogens are responsible for a significant number of infections whose origin has been traced to drinking water. These opportunistic pathogens represent an emerging water borne disease problem with a major economic cost of at least $1 billion annually. The common features of this group of waterborne pathogens include: disinfectant-resistance, pipe surface adherence and biofilm formation, growth in amoebae, growth on low organic concentrations, and growth at low oxygen levels. Their emergence is due to the fact that conditions resulting from drinking water treatment select for them. As such, there is a need for novel approaches to reduce exposure to these pathogens. In addition to much-needed research, controls to reduce numbers and human exposure can be instituted independently by utilities and homeowners and hospital- and building-operators.

  8. Ecological niche of plant pathogens

    Directory of Open Access Journals (Sweden)

    Ecaterina Fodor

    2011-02-01

    Full Text Available Disease ecology is a new approach to the understanding of the spread and dynamics of pathogens in natural and man-made environments. Defining and describing the ecological niche of the pathogens is one of the major tasks for ecological theory, as well as for practitioners preoccupied with the control and forecasting of established and emerging diseases. Niche theory has been periodically revised, not including in an explicit way the pathogens. However, many progresses have been achieved in niche modeling of disease spread, but few attempts were made to construct a theoretical frame for the ecological niche of pathogens. The paper is a review of the knowledge accumulated during last decades in the niche theory of pathogens and proposes an ecological approach in research. It quest for new control methods in what concerns forest plant pathogens, with a special emphasis on fungi like organisms of the genus Phytophthora. Species of Phytophthora are the most successful plant pathogens of the moment, affecting forest and agricultural systems worldwide, many of them being invasive alien organisms in many ecosystems. The hyperspace of their ecological niche is defined by hosts, environment and human interference, as main axes. To select most important variables within the hyperspace, is important for the understanding of the complex role of pathogens in the ecosystems as well as for control programs. Biotic relationships within ecosystem of host-pathogen couple are depicted by ecological network and specific metrics attached to this. The star shaped network is characterized by few high degree nodes, by short path lengths and relatively low connectivity, premises for a rapid disturbance spread.

  9. Ecological niche of plant pathogens

    Directory of Open Access Journals (Sweden)

    Ecaterina Fodor

    2011-06-01

    Full Text Available Disease ecology is a new approach to the understanding of the spread and dynamics of pathogens in natural and man-made environments. Defining and describing the ecological niche of the pathogens is one of the major tasks for ecological theory, as well as for practitioners preoccupied with the control and forecasting of established and emerging diseases. Niche theory has been periodically revised, not including in an explicit way the pathogens. However, many progresses have been achieved in niche modeling of disease spread, but few attempts were made to construct a theoretical frame for the ecological niche of pathogens. The paper is a review of the knowledge accumulated during last decades in the niche theory of pathogens and proposes an ecological approach in research. It quest for new control methods in what concerns forest plant pathogens, with a special emphasis on fungi like organisms of the genus Phytophthora. Species of Phytophthora are the most successful plant pathogens of the moment, affecting forest and agricultural systems worldwide, many of them being invasive alien organisms in many ecosystems. The hyperspace of their ecological niche is defined by hosts, environment and human interference, as main axes. To select most important variables within the hyperspace, is important the understanding of the complex role of pathogens in the ecosystems as well as for control programs. Biotic relationships within ecosystem of host-pathogen couple are depicted by ecological network and specific metrics attached to this. The star shaped network is characterized by few high degree nodes, by short path lengths and relatively low connectivity, premises for a rapid disturbance spread. 

  10. How plants recognize pathogens and defend themselves

    NARCIS (Netherlands)

    Wit, de P.J.G.M.

    2007-01-01

    Plants have an innate immunity system to defend themselves against pathogens. With the primary immune system, plants recognize microbe-associated molecular patterns (MAMPs) of potential pathogens through pattern recognition receptors (PRRs) that mediate a basal defense response. Plant pathogens

  11. Molecular Soybean-Pathogen Interactions.

    Science.gov (United States)

    Whitham, Steven A; Qi, Mingsheng; Innes, Roger W; Ma, Wenbo; Lopes-Caitar, Valéria; Hewezi, Tarek

    2016-08-04

    Soybean hosts a wide variety of pathogens that cause significant yield losses. The importance of soybean as a major oilseed crop has led to research focused on its interactions with pathogens, such as Soybean mosaic virus, Pseudomonas syringae, Phytophthora sojae, Phakopsora pachyrhizi, and Heterodera glycines. Pioneering work on soybean's interactions with these organisms, which represent the five major pathogen groups (viruses, bacteria, oomycetes, fungi, and nematodes), has contributed to our understanding of the molecular mechanisms underlying virulence and immunity. These mechanisms involve conserved and unique features that validate the need for research in both soybean and homologous model systems. In this review, we discuss identification of effectors and their functions as well as resistance gene-mediated recognition and signaling. We also point out areas in which model systems and recent advances in resources and tools have provided opportunities to gain deeper insights into soybean-pathogen interactions.

  12. Antibiotic Resistance in Foodborne Pathogens

    OpenAIRE

    Walsh, Ciara; Duffy, Geraldine

    2013-01-01

    Wide-spread antibiotic resistance among bacterial pathogens is now a serious public health issue and multi-antibiotic resistance has been reported in many foodborne pathogens including Salmonella and E. coli. A study to determine antibiotic resistance profiles of a range of Salmonella and Verocytotoxigenic E.coli (VTEC) isolated from Irish foods revealed significant levels of antibiotic resistance in the strains. S. typhimurium DT104 were multiantibiotic resistant with 97% resistant to 7 anti...

  13. Molecular detection of human bacterial pathogens

    National Research Council Canada - National Science Library

    Liu, Dongyou

    2011-01-01

    .... Molecular Detection of Human Bacterial Pathogens addresses this issue, with international scientists in respective bacterial pathogen research and diagnosis providing expert summaries on current...

  14. Preharvest quarantine treatments of Chlorantraniliprole,Clothianidin, & Imidacloprid-based insecticides for control of Japanese beetle Coleoptera:Scarabaeidae)& other scarab larvae in the root zone of field-grown nurserytrees

    Science.gov (United States)

    Japanese beetle, Popillia japonica Newman (Coleoptera: Scarabaeidae), is an important quarantine pest of nurseries. Nursery plant movement from P. japonica-infested regions is regulated by the U.S. Domestic Japanese Beetle Harmonization Plan (DJHP), which classifies states by risk categories. Treatm...

  15. Biosensors for plant pathogen detection.

    Science.gov (United States)

    Khater, Mohga; de la Escosura-Muñiz, Alfredo; Merkoçi, Arben

    2017-07-15

    Infectious plant diseases are caused by pathogenic microorganisms such as fungi, bacteria, viruses, viroids, phytoplasma and nematodes. Worldwide, plant pathogen infections are among main factors limiting crop productivity and increasing economic losses. Plant pathogen detection is important as first step to manage a plant disease in greenhouses, field conditions and at the country boarders. Current immunological techniques used to detect pathogens in plant include enzyme-linked immunosorbent assays (ELISA) and direct tissue blot immunoassays (DTBIA). DNA-based techniques such as polymerase chain reaction (PCR), real time PCR (RT-PCR) and dot blot hybridization have also been proposed for pathogen identification and detection. However these methodologies are time-consuming and require complex instruments, being not suitable for in-situ analysis. Consequently, there is strong interest for developing new biosensing systems for early detection of plant diseases with high sensitivity and specificity at the point-of-care. In this context, we revise here the recent advancement in the development of advantageous biosensing systems for plant pathogen detection based on both antibody and DNA receptors. The use of different nanomaterials such as nanochannels and metallic nanoparticles for the development of innovative and sensitive biosensing systems for the detection of pathogens (i.e. bacteria and viruses) at the point-of-care is also shown. Plastic and paper-based platforms have been used for this purpose, offering cheap and easy-to-use really integrated sensing systems for rapid on-site detection. Beside devices developed at research and development level a brief revision of commercially available kits is also included in this review. Copyright © 2016 Elsevier B.V. All rights reserved.

  16. Pathogen metadata platform: software for accessing and analyzing pathogen strain information.

    Science.gov (United States)

    Chang, Wenling E; Peterson, Matthew W; Garay, Christopher D; Korves, Tonia

    2016-09-15

    Pathogen metadata includes information about where and when a pathogen was collected and the type of environment it came from. Along with genomic nucleotide sequence data, this metadata is growing rapidly and becoming a valuable resource not only for research but for biosurveillance and public health. However, current freely available tools for analyzing this data are geared towards bioinformaticians and/or do not provide summaries and visualizations needed to readily interpret results. We designed a platform to easily access and summarize data about pathogen samples. The software includes a PostgreSQL database that captures metadata useful for disease outbreak investigations, and scripts for downloading and parsing data from NCBI BioSample and BioProject into the database. The software provides a user interface to query metadata and obtain standardized results in an exportable, tab-delimited format. To visually summarize results, the user interface provides a 2D histogram for user-selected metadata types and mapping of geolocated entries. The software is built on the LabKey data platform, an open-source data management platform, which enables developers to add functionalities. We demonstrate the use of the software in querying for a pathogen serovar and for genome sequence identifiers. This software enables users to create a local database for pathogen metadata, populate it with data from NCBI, easily query the data, and obtain visual summaries. Some of the components, such as the database, are modular and can be incorporated into other data platforms. The source code is freely available for download at https://github.com/wchangmitre/bioattribution .

  17. Evaluation of nutritional and biochemical properties of litchi (Litchi chinensis) and its quarantine treatment and shelf-life extension using radiation technology

    International Nuclear Information System (INIS)

    Hajare, Sachin N.; Saxena, Sudhanshu; Kumar, Sanjeev; Wadhawan, Surbhi; More, Varsha; Mishra, B.B.; Parte, Madan Narayan; Gautam, Satyendra; Sharma, Arun

    2009-01-01

    Combination of gamma irradiation and dip treatment on shelf life extension of two major cultivars of litchi namely, Shahi, and China was studied for improving market availability of the fruit and to overcome quarantine barrier for international trade. An extension in shelf life up to 28 days was achieved at 4 deg C, whereas, control fruits last around 10 days at 4 deg C. Physicochemical and nutritional parameters such as moisture content, acidity (pH), total soluble solid, total and reducing sugars, vitamin C content, phenolics, flavonoids, antioxidant activities, browning associated enzymatic activities, microbiological and sensory attributes were studied during the storage period. It was observed that low dose of gamma radiation did not affect significantly any of these parameters. Further, a novel combination dip treatment was developed which resulted in shelf life extension up to 60 days with complete inhibition of pericarp browning. (author)

  18. The need for culture collections to support plant pathogen diagnostic networks.

    Science.gov (United States)

    Barba, Marina; Van den Bergh, Inge; Belisario, Alessandra; Beed, Fen

    2010-01-01

    Plant-pathogenic microorganisms, by virtue of their size, similarity in disease symptoms and closely related morphologies, are notoriously difficult to diagnose and detect. Diagnosis gives proof as to the causal agent of disease and is important for developing appropriate control measures. Detection shows the presence of a microorganism and is of importance for safeguarding national and international trade. Live reference collections are required to characterize the taxonomy and function of microorganisms as a prerequisite to development of tools for diagnosis and detection. Two case studies will be presented in this paper to demonstrate the importance of microorganism collections for facilitating knowledge sharing and the development of identification methods. Fusarium wilt of banana caused by Fusarium oxysporum f. sp. cubense and sharka disease of stone fruits caused by plum pox virus (PPV) are considered. Both diseases consist of different races/strains with different host specificities, but Fusarium wilt poses a threat to food security, while PPV poses a threat to trade due to its classification as a quarantine pest, since there is no anti-virus treatment available to control sharka disease in orchards. It is only through comprehensive collections of correctly identified and well-maintained strains representing the genetic diversity of a target organism that robust, specific, reliable and efficient diagnostic and detection tools can be developed. (c) 2010 Elsevier Masson SAS. All rights reserved.

  19. DNA-based method for rapid identification of the pine pathogen, Phytophthora pinifolia.

    Science.gov (United States)

    Durán, Alvaro; Slippers, Bernard; Gryzenhout, Marieka; Ahumada, Rodrigo; Drenth, Andre; Wingfield, Brenda D; Wingfield, Michael J

    2009-09-01

    Phytophthora pinifolia causes a needle and shoot disease in Pinus radiata, referred to as 'Daño Foliar del Pino'. This newly discovered disease requires intensive research efforts that necessitate the processing of large numbers of samples for which accurate identification, often by people not experienced in Phytophthora taxonomy, is required. The aim of this study was, therefore, to develop species-specific primers for P. pinifolia that amplify the internal transcribed spacer region of the ribosomal operon and the nuclear Ypt1 gene, respectively. The primers were tested over several Phytophthora spp., as well as fungi isolated from P. radiata. In all cases, only P. pinifolia was amplified. In addition to the species-specific primers, a PCR-restriction fragment length polymorphism protocol using available Phytophthora genus-specific primers was also used to generate a species-specific profile for P. pinifolia. This provided a characteristic profile that allows the identification of P. pinifolia, and it could also discriminate between 27 different species of Phytophthora. Both techniques reported in this study make it possible to identify large numbers of P. pinifolia cultures accurately and efficiently, which will be important for both quarantine work and biological research on this important new pathogen.

  20. The pathogenic Asian fish tapeworm, Bothriocephalus acheilognathi Yamaguti, 1934 (Cestoda in the Red discus (Symphysodon discus

    Directory of Open Access Journals (Sweden)

    Košuthová L.

    2015-09-01

    Full Text Available The Asian fish tapeworm, Bothriocephalus acheilognathi Yamaguti, 1934, was detected for the first time in breeding of discus fish Symphysodon discus (Perciformes, Cichlidae, a popular South American cichlid. In examined samples, the adult and juvenile cestodes of B. acheilognathi with mean intensity of infection 30 (range 19 - 47 individuals per fish were found. The infected fish displayed acute behavioral symptoms. Mortality was significant; it reached almost 80 % in youngest age categories. As treatment, praziquantel immersions in dose 2 mg per liter were well tolerated and efficacious. The risk of spreading pathogens via imported fish is actual menace for ornamental breeding fish, therefore, thorough quarantine and prophylactic measures needs to be done by all fish imports and introductions. Import and subsequent release of infected ornamental fish into freshwater ecosystems may represent serious risk for spread and establishment of the parasite in native fish species. This case study illustrates that ornamental fish play also a key role in national and international movements of parasites in freshwater habitats.

  1. Specific and sensitive detection of the conifer pathogen Gremmeniella abietina by nested PCR

    Directory of Open Access Journals (Sweden)

    Hansson Per

    2005-11-01

    Full Text Available Abstract Background Gremmeniella abietina (Lagerb. Morelet is an ascomycete fungus that causes stem canker and shoot dieback in many conifer species. The fungus is widespread and causes severe damage to forest plantations in Europe, North America and Asia. To facilitate early diagnosis and improve measures to control the spread of the disease, rapid, specific and sensitive detection methods for G. abietina in conifer hosts are needed. Results We designed two pairs of specific primers for G. abietina based on the 18S rDNA sequence variation pattern. These primers were validated against a wide range of fungi and 14 potential conifer hosts. Based on these specific primers, two nested PCR systems were developed. The first system employed universal fungal primers to enrich the fungal DNA targets in the first round, followed by a second round selective amplification of the pathogen. The other system employed G. abietina-specific primers in both PCR steps. Both approaches can detect the presence of G. abietina in composite samples with high sensitivity, as little as 7.5 fg G. abietina DNA in the host genomic background. Conclusion The methods described here are rapid and can be applied directly to a wide range of conifer species, without the need for fungal isolation and cultivation. Therefore, it represents a promising alternative to disease inspection in forest nurseries, plantations and quarantine control facilities.

  2. Compositions and methods for pathogen transport

    Energy Technology Data Exchange (ETDEWEB)

    El-Etr, Sahar; Farquar, George R.

    2016-01-26

    This disclosure provides a method for transporting a pathogen under ambient conditions, by culturing the pathogen with an amoeba under conditions that favor the incorporation of the pathogen into a trophozoite, starving the amoeba until it encysts, then culturing under conditions that favor conversion of the amoeba back to a trophozoite. In one aspect, the conditions that favor incorporation of the pathogen into the cyst of the amoeba comprises contacting the pathogen with the amoeba in an iron rich environment. Virus and/or bacteria are pathogens that can be transported by the disclosed method. Amoeba that are useful in the disclosed methods include, without limitation Acanthamoeba castellanii, Hartmannella vermiformis and Naegleria gruberi. The disclosed methods have utility in: transporting pathogens from military field hospitals and clinics to the laboratory; transporting pathogens from global satellite laboratories to clinical laboratories; long term storage of pathogens; enriching contaminated patient samples for pathogens of interest; biosurveillance and detection efforts.

  3. Pathogenicity of highly pathogenic avian influenza virus in mammals

    NARCIS (Netherlands)

    de Wit, Emmie; Kawaoka, Yoshihiro; de Jong, Menno D.; Fouchier, Ron A. M.

    2008-01-01

    In recent years, there has been an increase in outbreaks of highly pathogenic avian influenza (HPAI) in poultry. Occasionally, these outbreaks have resulted in transmission of influenza viruses to humans and other mammals, with symptoms ranging from conjunctivitis to pneumonia and death. Here, the

  4. From multiple pathogenicity islands to a unique organized pathogenicity archipelago.

    Science.gov (United States)

    Bouyioukos, Costas; Reverchon, Sylvie; Képès, François

    2016-06-15

    Pathogenicity islands are sets of successive genes in a genome that determine the virulence of a bacterium. In a growing number of studies, bacterial virulence appears to be determined by multiple islands scattered along the genome. This is the case in a family of seven plant pathogens and a human pathogen that, under KdgR regulation, massively secrete enzymes such as pectinases that degrade plant cell wall. Here we show that their multiple pathogenicity islands form together a coherently organized, single "archipelago" at the genome scale. Furthermore, in half of the species, most genes encoding secreted pectinases are expressed from the same DNA strand (transcriptional co-orientation). This genome architecture favors DNA conformations that are conducive to genes spatial co-localization, sometimes complemented by co-orientation. As proteins tend to be synthetized close to their encoding genes in bacteria, we propose that this architecture would favor the efficient funneling of pectinases at convergent points within the cell. The underlying functional hypothesis is that this convergent funneling of the full blend of pectinases constitutes a crucial strategy for successful degradation of the plant cell wall. Altogether, our work provides a new approach to describe and predict, at the genome scale, the full virulence complement.

  5. New trends in emerging pathogens.

    Science.gov (United States)

    Skovgaard, Niels

    2007-12-15

    The emergence of pathogens is the result of a number of impact in all parts of the food chain. The emerging technologies in food production explain how new pathogens can establish themselves in the food chain and compromise food safety. The impact of the food technology is analysed for several bacteria, such as Yersinia, Campylobacter, Arcobacter, Helicobacter pullorum, Enterobacter sakazakii, Mycobacterium avium spp. paratuberculosis, prions related to vCJD and others. The importance of the ability of many microbes to form VBNC forms is elaborated on. Research on culture independent methods may address this outstanding issue to the better understanding of emerging pathogens. The "demerging" of pathogens also occur, and examples of this are explained. The reaction of bacteria to stresses and sublethal treatments, and how exposure to one stress factor can confer resistance to other stresses, literally speaking causing contagious resistance, are explained. The implication of this e.g. in modern approaches of food preservation, such as Minimally processed Foods, is considerable. Intestinal colonization of EHEC may be regulated by Quorum sensing, and this ability of microbes plays an important role in the colonization of microbes in food and on food processing equipment, an important factor in the emergence of pathogens. The emergence of Saccharomyces cerevisiae, as an opportunistic human pathogen, used for centuries for food and production of alcoholic beverages, calls for research in molecular tools to distinguish between probiotic and clinical strains. Cyclospora cayetanensis and Norovirus outbreaks can no longer be designated as emerging pathogens, they share however one characteristic in the epidemiology of emerging nature, the importance of the hygiene in the primary production stage, including supply of potable water, and the application of GMP and the HACCP principles in the beginning of the food chain. Hepatitis E virus is a potential emerging food borne

  6. Applied Genomics of Foodborne Pathogens

    DEFF Research Database (Denmark)

    This book provides a timely and thorough snapshot into the emerging and fast evolving area of applied genomics of foodborne pathogens. Driven by the drastic advance of whole genome shot gun sequencing (WGS) technologies, genomics applications are becoming increasingly valuable and even essential...... in studying, surveying and controlling foodborne microbial pathogens. The vast opportunities brought by this trend are often at odds with the lack of bioinformatics know-how among food safety and public health professionals, since such expertise is not part of a typical food microbiology curriculum and skill...

  7. Global Genetics and Invasion History of the Potato Powdery Scab Pathogen, Spongospora subterranea f.sp. subterranea

    Science.gov (United States)

    Gau, Rebecca D.; Merz, Ueli; Falloon, Richard E.; Brunner, Patrick C.

    2013-01-01

    Spongospora subterranea f. sp. subterranea (Sss) causes two diseases on potato (Solanum tuberosum), lesions on tubers and galls on roots, which are economically important worldwide. Knowledge of global genetic diversity and population structure of pathogens is essential for disease management including resistance breeding. A combination of microsatellite and DNA sequence data was used to investigate the structure and invasion history of Sss. South American populations (four countries, 132 samples) were consistently more diverse than those from all other regions (15 countries, 566 samples), in agreement with the hypothesis that Sss originated in South America where potato was domesticated. A substantial genetic differenciation was found between root and tuber-derived samples from South America. Estimates of past and recent gene flow suggested that Sss was probably introduced from South America into Europe. Subsequently, Europe is likely to have been the recent source of migrants of the pathogen, acting as a “bridgehead” for further global dissemination. Quarantine measures must continue to be focussed on maintaining low global genetic diversity and avoiding exchange of genetic material between the native and introduced regions. Nevertheless, the current low global genetic diversity of Sss allows potato breeders to select for resistance, which is likely to be durable. PMID:23840791

  8. Experimental assessment of the pathogenicity of two avian influenza A H5 viruses in ostrich chicks (Struthio camelus) and chickens.

    Science.gov (United States)

    Manvell, R J; Jørgensen, P H; Nielsen, O L; Alexander, D J

    1998-01-01

    Virus excretion, immune response, and, for chickens, deaths were recorded in 3-week-old ostriches and chickens inoculated by either the intramuscular or intranasal route with one of two influenza A viruses of subtype H5. One of the viruses, A/turkey/England/50-92/91 (H5N1) (50/92), was highly pathogenic for chickens causing 5/5 deaths by each route of inoculation. The other virus, A/ostrich/Denmark-Q/72420/96 (H5N2) (72420/96), isolated from ostriches in quarantine in Denmark during 1996, was of low pathogenicity for chickens, causing no clinical signs by either route of inoculation. No significant clinical signs were seen in any of the ostriches infected with either of the viruses by either route of infection. Both viruses were recoverable from both species up to 12 days post-infection, and low serological responses were detected in surviving infected ostriches and chickens at 21 days after inoculation.

  9. Experimental assessment of the pathogenicity of two avian influenza A H5 viruses in ostrich chicks (Struthio camelus) and chickens

    DEFF Research Database (Denmark)

    Manvell, R.J.; Jørgensen, Poul Henrik; Nielsen, O.L.

    1998-01-01

    Virus excretion, immune response, and, for chickens, deaths were recorded in 3-week-old ostriches and chickens inoculated by either the intramuscular or intranasal route with one of two influenza A viruses of subtype H5, One of the viruses, A/turkey/England/50-92/91 (H5N1) (50/92), was highly...... pathogenic for chickens causing 5/5 deaths by each route of inoculation, The other virus, A/ostrich/Denmark-Q/72420/96 (H5N2) (72420/96), isolated from ostriches in quarantine in Denmark during 1996, was of low pathogenicity for chickens, causing no clinical signs by either route of inoculation....... No significant clinical signs mere seen in any of the ostriches infected with either of the viruses by either route of infection. Both viruses were recoverable from both species up to 12 days post-infection, and low serological responses were detected in surviving infected ostriches and chickens at 21 days after...

  10. Global genetics and invasion history of the potato powdery scab pathogen, Spongospora subterranea f.sp. subterranea.

    Science.gov (United States)

    Gau, Rebecca D; Merz, Ueli; Falloon, Richard E; Brunner, Patrick C

    2013-01-01

    Spongospora subterranea f. sp. subterranea (Sss) causes two diseases on potato (Solanum tuberosum), lesions on tubers and galls on roots, which are economically important worldwide. Knowledge of global genetic diversity and population structure of pathogens is essential for disease management including resistance breeding. A combination of microsatellite and DNA sequence data was used to investigate the structure and invasion history of Sss. South American populations (four countries, 132 samples) were consistently more diverse than those from all other regions (15 countries, 566 samples), in agreement with the hypothesis that Sss originated in South America where potato was domesticated. A substantial genetic differentiation was found between root and tuber-derived samples from South America. Estimates of past and recent gene flow suggested that Sss was probably introduced from South America into Europe. Subsequently, Europe is likely to have been the recent source of migrants of the pathogen, acting as a "bridgehead" for further global dissemination. Quarantine measures must continue to be focussed on maintaining low global genetic diversity and avoiding exchange of genetic material between the native and introduced regions. Nevertheless, the current low global genetic diversity of Sss allows potato breeders to select for resistance, which is likely to be durable.

  11. Global genetics and invasion history of the potato powdery scab pathogen, Spongospora subterranea f.sp. subterranea.

    Directory of Open Access Journals (Sweden)

    Rebecca D Gau

    Full Text Available Spongospora subterranea f. sp. subterranea (Sss causes two diseases on potato (Solanum tuberosum, lesions on tubers and galls on roots, which are economically important worldwide. Knowledge of global genetic diversity and population structure of pathogens is essential for disease management including resistance breeding. A combination of microsatellite and DNA sequence data was used to investigate the structure and invasion history of Sss. South American populations (four countries, 132 samples were consistently more diverse than those from all other regions (15 countries, 566 samples, in agreement with the hypothesis that Sss originated in South America where potato was domesticated. A substantial genetic differentiation was found between root and tuber-derived samples from South America. Estimates of past and recent gene flow suggested that Sss was probably introduced from South America into Europe. Subsequently, Europe is likely to have been the recent source of migrants of the pathogen, acting as a "bridgehead" for further global dissemination. Quarantine measures must continue to be focussed on maintaining low global genetic diversity and avoiding exchange of genetic material between the native and introduced regions. Nevertheless, the current low global genetic diversity of Sss allows potato breeders to select for resistance, which is likely to be durable.

  12. Pathogen pollution and the emergence of a deadly amphibian pathogen.

    Science.gov (United States)

    McKenzie, Valerie J; Peterson, Anna C

    2012-11-01

    Imagine a single pathogen that is responsible for mass mortality of over a third of an entire vertebrate class. For example, if a single pathogen were causing the death, decline and extinction of 30% of mammal species (including humans), the entire world would be paying attention. This is what has been happening to the world's amphibians - the frogs, toads and salamanders that are affected by the chytrid fungal pathogen, Batrachochytrium dendrobatidis (referred to as Bd), which are consequently declining at an alarming rate. It has aptly been described as the worst pathogen in history in terms of its effects on biodiversity (Kilpatrick et al. 2010). The pathogen was only formally described about 13 years ago (Longcore et al. 1999), and scientists are still in the process of determining where it came from and investigating the question: why now? Healthy debate has ensued as to whether Bd is a globally endemic organism that only recently started causing high mortality due to shifting host responses and/or environmental change (e.g. Pounds et al. 2006) or whether a virulent strain of the pathogen has rapidly disseminated around the world in recent decades, affecting new regions with a vengeance (e.g. Morehouse et al. 2003; Weldon et al. 2004; Lips et al. 2008). We are finally beginning to shed more light on this question, due to significant discoveries that have emerged as a result of intensive DNA-sequencing methods comparing Bd isolates from different amphibian species across the globe. Evidence is mounting that there is indeed a global panzootic lineage of Bd (BdGPL) in addition to what appear to be more localized endemic strains (Fisher et al. 2009; James et al. 2009; Farrer et al. 2011). Additionally, BdGPL appears to be a hypervirulent strain that has resulted from the hybridization of different Bd strains that came into contact in recent decades, and is now potentially replacing the less-virulent endemic strains of the pathogen (Farrer et al. 2011

  13. Pathogenicity of Shigella in Chickens

    Science.gov (United States)

    Chen, Lu; Chang, Hong-tao; Liu, Hong-ying; Zhao, Jun; Wang, Xin-wei; Wang, Chuan-qing

    2014-01-01

    Shigellosis in chickens was first reported in 2004. This study aimed to determine the pathogenicity of Shigella in chickens and the possibility of cross-infection between humans and chickens. The pathogenicity of Shigella in chickens was examined via infection of three-day-old SPF chickens with Shigella strain ZD02 isolated from a human patient. The virulence and invasiveness were examined by infection of the chicken intestines and primary chicken intestinal epithelial cells. The results showed Shigella can cause death via intraperitoneal injection in SPF chickens, but only induce depression via crop injection. Immunohistochemistry and transmission electron microscopy revealed the Shigella can invade the intestinal epithelia. Immunohistochemistry of the primary chicken intestinal epithelial cells infected with Shigella showed the bacteria were internalized into the epithelial cells. Electron microscopy also confirmed that Shigella invaded primary chicken intestinal epithelia and was encapsulated by phagosome-like membranes. Our data demonstrate that Shigella can invade primary chicken intestinal epithelial cells in vitro and chicken intestinal mucosa in vivo, resulting in pathogenicity and even death. The findings suggest Shigella isolated from human or chicken share similar pathogenicity as well as the possibility of human-poultry cross-infection, which is of public health significance. PMID:24949637

  14. Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health.

    Science.gov (United States)

    Marsberg, Angelica; Kemler, Martin; Jami, Fahimeh; Nagel, Jan H; Postma-Smidt, Alisa; Naidoo, Sanushka; Wingfield, Michael J; Crous, Pedro W; Spatafora, Joseph W; Hesse, Cedar N; Robbertse, Barbara; Slippers, Bernard

    2017-05-01

    Botryosphaeria dothidea is the type species of Botryosphaeria (Botryosphaeriaceae, Botryosphaeriales). Fungi residing in this order are amongst the most widespread and important canker and dieback pathogens of trees worldwide, with B. dothidea one of the most common species on a large number of hosts. Its taxonomic circumscription has undergone substantial change in the past decade, making it difficult to interpret the large volume of literature linked to the name B. dothidea. This pathogen profile synthesizes the current understanding of B. dothidea pertaining to its distribution, host associations and role as a pathogen in managed and natural woody environments. The prolonged latent infection or endophytic phase is of particular importance, as it implies that the fungus can easily pass undetected by quarantine systems in traded living plants, fruits and other plant parts. Infections typically become obvious only under conditions of host stress, when disease symptoms develop. This study also considers the knowledge emerging from the recently sequenced B. dothidea genome, elucidating previously unknown aspects of the species, including mating and host infection strategies. Despite more than 150 years of research on B. dothidea, there is clearly much to be learned regarding this global tree pathogen. This is increasingly important given the stresses imposed on various woody hosts as a result of climate change. Botryosphaeria dothidea (Moug. ex Fr) Ces. & De Not, 1863. Kingdom Fungi, Phylum Ascomycota, Class Dothideomycetes, Order Botryosphaeriales, Family Botryosphaeriaceae, Genus Botryosphaeria, Species dothidea. Confirmed on more than 24 host genera, including woody plants, such as Acacia (= Vachellia), Eucalyptus, Vitis and Pistachio. Associated with twig, branch and stem cankers, tip and branch dieback, fruit rot, blue stain and plant death. The Botryosphaeria site for detailed morphological descriptions (http

  15. Neuroepigenetic regulation of pathogenic memories

    Directory of Open Access Journals (Sweden)

    Stephanie E. Sillivan

    2015-01-01

    Full Text Available Our unique collection of memories determines our individuality and shapes our future interactions with the world. Remarkable advances into the neurobiological basis of memory have identified key epigenetic mechanisms that support the stability of memory. Various forms of epigenetic regulation at the levels of DNA methylation, histone modification, and noncoding RNAs can modulate transcriptional and translational events required for memory processes. By changing the cellular profile in the brain’s emotional, reward, and memory circuits, these epigenetic modifications have also been linked to perseverant, pathogenic memories. In this review, we will delve into the relevance of epigenetic dysregulation to pathogenic memory mechanisms by focusing on 2 neuropsychiatric disorders perpetuated by aberrant memory associations: substance use disorder and post-traumatic stress disorder. As our understanding improves, neuroepigenetic mechanisms may someday be harnessed to develop novel therapeutic targets for the treatment of these chronic, relapsing disorders.

  16. Antimicrobial resistance of mastitis pathogens.

    Science.gov (United States)

    Oliver, Stephen P; Murinda, Shelton E

    2012-07-01

    Antibiotics are used extensively in the dairy industry to combat disease and to improve animal performance. Antibiotics such as penicillin, cephalosporin, streptomycin, and tetracycline are used for the treatment and prevention of diseases affecting dairy cows caused by a variety of gram-positive and gram-negative bacteria. Antibiotics are often administrated routinely to entire herds to prevent mastitis during the dry period. An increase in the incidence of disease in a herd generally results in increased use of antimicrobials, which in turn increases the potential for antibiotic residues in milk and the potential for increased bacterial resistance to antimicrobials. Continued use of antibiotics in the treatment and prevention of diseases of dairy cows will continue to be scrutinized. It is clear that strategies employing the prudent use of antimicrobials are needed. This clearly illustrates the importance of effective herd disease prevention and control programs. Based on studies published to date, scientific evidence does not support widespread, emerging resistance among mastitis pathogens to antibacterial drugs even though many of these antibiotics have been used in the dairy industry for treatment and prevention of disease for several decades. However, it is clear that use of antibiotics in dairy cows can contribute to increased antimicrobial resistance. While antimicrobial resistance does occur, we are of the opinion that the advantages of using antibiotics for the treatment of mastitis far outweigh the disadvantages. The clinical consequences of antimicrobial resistance of dairy pathogens affecting humans appear small. Antimicrobial resistance among dairy pathogens, particularly those found in milk, is likely not a human health concern as long as the milk is pasteurized. However, there are an increasing number of people who choose to consume raw milk. Transmission of an antimicrobial-resistant mastitis pathogen and/or foodborne pathogen to humans could occur

  17. Periodontal pathogens in atheromatous plaque

    OpenAIRE

    Saroj K. Rath; Manish Mukherjee; R Kaushik; Sourav Sen; Mukesh Kumar

    2014-01-01

    Background: There has been increasing attention paid in recent years to the possibility that oral bacterial infection, particularly periodontal disease may influence the initiation and or progression of systemic diseases. These studies confirm the observation that heart disease is the most commonly found systemic condition in patients with periodontal disease. Moreover, the literature has also highlighted substantial evidence indicating the presence of Gram-negative periodontal pathogens in a...

  18. Host-Pathogen Coupled Interactions

    Science.gov (United States)

    2015-01-04

    describe bacterial proliferation in the host (and the host’s immune response), and molecular-level models describing the subversion of the molecular...the pathogen is endocytosed by host immune cells, and in the course of infection can escape back into the tissue or bloodstream of the host. During...host’s overall ( immune ) response. 15. SUBJECT TERMS Mathematical model, signaling pathways, bacterial infection, macrophage, immune system 16. SECURITY

  19. Aeromonas Hydrophila: A Re-Emerging Pathogen

    Digital Repository Service at National Institute of Oceanography (India)

    Lakshmanaperumalsamy, P.; Thayumanavan, T.; Subashkumar, R.

    been initiated by their importance as fish pathogens or as a potential pathogen of humans and have, therefore, tended to focus on commercial and sport fisheries and recreational waters. Mesophilic aeromonads are halotolerant and are associated...

  20. Programmed Pathogen Sense and Destroy Circuits

    National Research Council Canada - National Science Library

    Weiss, Ron

    2009-01-01

    We are creating an anti-microbial sense-and-destroy system by engineering sentinel/killer cells that detect the presence of pathogenic bacteria, report the identity of the pathogen with a coded output...

  1. Evolutionary biology of bacterial and fungal pathogens

    National Research Council Canada - National Science Library

    Cassell, Gail H; Gutierrez-Fuentes, Jose A; Barquero, Fernando; Nombela, Cesar

    2008-01-01

    ... and Evolutionary Dynamics of Pathogens * 21 Keith A. Crandall and Marcos Pérez-Losada II. Evolutionary Genetics of Microbial Pathogens 4. Environmental and Social Influences on Infectious Disea...

  2. Secreted proteases from pathogenic fungi.

    Science.gov (United States)

    Monod, Michel; Capoccia, Sabrina; Léchenne, Barbara; Zaugg, Christophe; Holdom, Mary; Jousson, Olivier

    2002-10-01

    Many species of human pathogenic fungi secrete proteases in vitro or during the infection process. Secreted endoproteases belong to the aspartic proteases of the pepsin family, serine proteases of the subtilisin family, and metalloproteases of two different families. To these proteases has to be added the non-pepsin-type aspartic protease from Aspergillus niger and a unique chymotrypsin-like protease from Coccidioides immitis. Pathogenic fungi also secrete aminopeptidases, carboxypeptidases and dipeptidyl-peptidases. The function of fungal secreted proteases and their importance in infections vary. It is evident that secreted proteases are important for the virulence of dermatophytes since these fungi grow exclusively in the stratum corneum, nails or hair, which constitutes their sole nitrogen and carbon sources. The aspartic proteases secreted by Candida albicans are involved in the adherence process and penetration of tissues, and in interactions with the immune system of the infected host. For Aspergillus fumigatus, the role of proteolytic activity has not yet been proved. Although the secreted proteases have been intensively investigated as potential virulence factors, knowledge on protease substrate specificities is rather poor and few studies have focused on the research of inhibitors. Knowledge of substrate specificities will increase our understanding about the action of each protease secreted by pathogenic fungi and will help to determine their contribution to virulence.

  3. Molecular Mechanisms of Bacterial Pathogenicity

    Science.gov (United States)

    Fuchs, Thilo Martin

    Cautious optimism has arisen over recent decades with respect to the long struggle against bacteria, viruses, and parasites. This has been offset, however, by a fatal complacency stemming from previous successes such as the development of antimicrobial drugs, the eradication of smallpox, and global immunization programs. Infectious diseases nevertheless remain the world's leading cause of death, killing at least 17 million persons annually [61]. Diarrheal diseases caused by Vibrio cholerae or Shigella dysenteriae kill about 3 million persons every year, most of them young children: Another 4 million die of tuberculosis or tetanus. Outbreaks of diphtheria in Eastern Europe threatens the population with a disease that had previously seemed to be overcome. Efforts to control infectious diseases more comprehensively are undermined not only by socioeconomic conditions but also by the nature of the pathogenic organisms itself; some isolates of Staphylococcus aureus and Enterobacter have become so resistant to drugs by horizontal gene transfer that they are almost untreatable. In addition, the mechanism of genetic variability helps pathogens to evade the human immune system, thus compromising the development of powerful vaccines. Therefore detailed knowledge of the molecular mechanisms of microbial pathogenicity is absolutely necessary to develop new strategies against infectious diseases and thus to lower their impact on human health and social development.

  4. Minisequencing mitochondrial DNA pathogenic mutations

    Directory of Open Access Journals (Sweden)

    Carracedo Ángel

    2008-04-01

    Full Text Available Abstract Background There are a number of well-known mutations responsible of common mitochondrial DNA (mtDNA diseases. In order to overcome technical problems related to the analysis of complete mtDNA genomes, a variety of different techniques have been proposed that allow the screening of coding region pathogenic mutations. Methods We here propose a minisequencing assay for the analysis of mtDNA mutations. In a single reaction, we interrogate a total of 25 pathogenic mutations distributed all around the whole mtDNA genome in a sample of patients suspected for mtDNA disease. Results We have detected 11 causal homoplasmic mutations in patients suspected for Leber disease, which were further confirmed by standard automatic sequencing. Mutations m.11778G>A and m.14484T>C occur at higher frequency than expected by change in the Galician (northwest Spain patients carrying haplogroup J lineages (Fisher's Exact test, P-value Conclusion We here developed a minisequencing genotyping method for the screening of the most common pathogenic mtDNA mutations which is simple, fast, and low-cost. The technique is robust and reproducible and can easily be implemented in standard clinical laboratories.

  5. Effectiveness of irradiation in killing pathogens

    International Nuclear Information System (INIS)

    Yeager, J.G.; Ward, R.L.

    1980-01-01

    United States Environmental Protection Agency regulations include gamma ray irradiation of sludge as an approved Process to Further Reduce Pathogens (PFRP) prior to land application. Research at Sandia National Laboratories on pathogen inactivation in sludge by gamma irradiation has demonstrated that the 1 Mrad PFRP dose is capable, by itself, of eliminating bacterial, fungal, and parasitic pathogens from sludge. Gamma irradiation of sludge in conjunction with the required Processes to Significantly Reduce Pathogens (PSRP) should also eliminate the viral hazard from wastewater sludges

  6. Host-pathogen interactions during apoptosis

    Indian Academy of Sciences (India)

    Host pathogen interaction results in a variety of responses, which include phagocytosis of the pathogen, release of cytokines, secretion of toxins, as well as production of reactive oxygen species (ROS). Recent studies have shown that many pathogens exert control on the processes that regulate apoptosis in the host.

  7. Comparative transcriptomics of pathogenic and non-pathogenic Listeria species

    Science.gov (United States)

    Wurtzel, Omri; Sesto, Nina; Mellin, J R; Karunker, Iris; Edelheit, Sarit; Bécavin, Christophe; Archambaud, Cristel; Cossart, Pascale; Sorek, Rotem

    2012-01-01

    Listeria monocytogenes is a human, food-borne pathogen. Genomic comparisons between L. monocytogenes and Listeria innocua, a closely related non-pathogenic species, were pivotal in the identification of protein-coding genes essential for virulence. However, no comprehensive comparison has focused on the non-coding genome. We used strand-specific cDNA sequencing to produce genome-wide transcription start site maps for both organisms, and developed a publicly available integrative browser to visualize and analyze both transcriptomes in different growth conditions and genetic backgrounds. Our data revealed conservation across most transcripts, but significant divergence between the species in a subset of non-coding RNAs. In L. monocytogenes, we identified 113 small RNAs (33 novel) and 70 antisense RNAs (53 novel), significantly increasing the repertoire of ncRNAs in this species. Remarkably, we identified a class of long antisense transcripts (lasRNAs) that overlap one gene while also serving as the 5′ UTR of the adjacent divergent gene. Experimental evidence suggests that lasRNAs transcription inhibits expression of one operon while activating the expression of another. Such a lasRNA/operon structure, that we named ‘excludon', might represent a novel form of regulation in bacteria. PMID:22617957

  8. Future research needs involving pathogens in groundwater

    Science.gov (United States)

    Bradford, Scott A.; Harvey, Ronald W.

    2017-06-01

    Contamination of groundwater by enteric pathogens has commonly been associated with disease outbreaks. Proper management and treatment of pathogen sources are important prerequisites for preventing groundwater contamination. However, non-point sources of pathogen contamination are frequently difficult to identify, and existing approaches for pathogen detection are costly and only provide semi-quantitative information. Microbial indicators that are readily quantified often do not correlate with the presence of pathogens. Pathogens of emerging concern and increasing detections of antibiotic resistance among bacterial pathogens in groundwater are topics of growing concern. Adequate removal of pathogens during soil passage is therefore critical for safe groundwater extraction. Processes that enhance pathogen transport (e.g., high velocity zones and preferential flow) and diminish pathogen removal (e.g., reversible retention and enhanced survival) are of special concern because they increase the risk of groundwater contamination, but are still incompletely understood. Improved theory and modeling tools are needed to analyze experimental data, test hypotheses, understand coupled processes and controlling mechanisms, predict spatial and/or temporal variability in model parameters and uncertainty in pathogen concentrations, assess risk, and develop mitigation and best management approaches to protect groundwater.

  9. Complement Evasion by Pathogenic Leptospira.

    Science.gov (United States)

    Fraga, Tatiana Rodrigues; Isaac, Lourdes; Barbosa, Angela Silva

    2016-01-01

    Leptospirosis is a neglected infectious disease caused by spirochetes from the genus Leptospira . Pathogenic microorganisms, notably those which reach the blood circulation such as Leptospira , have evolved multiple strategies to escape the host complement system, which is important for innate and acquired immunity. Leptospira avoid complement-mediated killing through: (i) recruitment of host complement regulators; (ii) acquisition of host proteases that cleave complement proteins on the bacterial surface; and, (iii) secretion of proteases that inactivate complement proteins in the Leptospira surroundings. The recruitment of host soluble complement regulatory proteins includes the acquisition of Factor H (FH) and FH-like-1 (alternative pathway), C4b-binding protein (C4BP) (classical and lectin pathways), and vitronectin (Vn) (terminal pathway). Once bound to the leptospiral surface, FH and C4BP retain cofactor activity of Factor I in the cleavage of C3b and C4b, respectively. Vn acquisition by leptospires may result in terminal pathway inhibition by blocking C9 polymerization. The second evasion mechanism lies in plasminogen (PLG) binding to the leptospiral surface. In the presence of host activators, PLG is converted to enzymatically active plasmin, which is able to degrade C3b, C4b, and C5 at the surface of the pathogen. A third strategy used by leptospires to escape from complement system is the active secretion of proteases. Pathogenic, but not saprophytic leptospires, are able to secrete metalloproteases that cleave C3 (central complement molecule), Factor B (alternative pathway), and C4 and C2 (classical and lectin pathways). The purpose of this review is to fully explore these complement evasion mechanisms, which act together to favor Leptospira survival and multiplication in the host.

  10. Icu Pathogens: A Continuous Challenge

    International Nuclear Information System (INIS)

    Hafeez, A.; Munir, T.; Najeeb, S.; Rehman, S.; Gilani, M.

    2016-01-01

    Objective: To determine the frequency and antibiogram of pathogens in an intensive care unit (ICU). Study Design: Cross-sectional, observational study. Place and Duration of Study: Department of Microbiology, Army Medical College, National University of Science and Technology, Islamabad, from January 2013 to January 2014. Methodology: Clinical samples, received from patients admitted in ICU, were inoculated on various medias like blood agar, chocolate agar, MacConkey agar and urine samples on CLED. These were then incubated at 37 degree C for 24 hours. Isolates were identified by colony morphology, Gram reaction, catalase test, oxidase test. Species identification in case of Gram Negative Rods was done by using API 20E (BioMerieux). Antibiotic susceptibility was done by using modified KirbyBauer disc diffusion technique. Bacterial isolates were prepared and inoculated on Mueller-Hinton agar plates followed by application of various antibiotic disc (Oxoid, UK) as per manufacturer's instructions. The plates were then incubated at 37 degree C aerobically for 18 - 24 hours. Zone diameters were measured and interpreted as sensitive and resistant, according to Clinical and Laboratory Standards Institute (CLSI) guidelines. Results: Out of the 367 positive cultures, 116 (31.08 percent) were Acinetobacter baumanniisusceptible to minocycline and tigecycline followed by Klebsiella pneumoniae (n=71, 16 percent) susceptible to tigecycline and meropenem. Others were Pseudomonas aeruginosa, Escherichia coli Coagulase Negative Staphylococcus, Staphylococcus aureus, Enterococcus spp., Streptococcus spp., Klebsiella oxytoca, Stenotrophomonas maltophilia, and Candida spp. Conclusion: Acinetobacter baumannii was the most frequently isolated pathogen. Most of the cultures yielding pathogens were from respiratory tract samples. Gram negative isolates were multidrug resistant but most were tigecycline and susceptible to meropenem. (author)

  11. COXIELLA BURNETII PATHOGENICITY MOLECULAR BASIS

    Directory of Open Access Journals (Sweden)

    Yu. A. Panferova

    2016-01-01

    Full Text Available Coxiella burnetii is an obligate intracellular gram-negative bacterial pathogen, an ethiological agent of Q-fever, a zoonotic disease, elapsing as an acute (mostly atypical pneumonia or a chronic (mostly endocarditis form. The host range is represented by wide range of mammal, avian and arthropod species, but the main source of human infection are farm animals. The main route of infection is aerosolic. In case of contact with organism pathogen binds with phagocytal monocytic-macrophagal cell line. C. burnetii promotes maturation of specific phagolysosome-like compartment in host cell, called coxiella-containing vacuole, within this vacuole pathogen becames metabolically activated and actively replicates. Coxiella persists as metabolically inactive spore-like form in environment. Internalisation of C. burnetii occurs using actin-mediated phagocytosis and zipper mechanism. After internalization of bacteria maturation of phagolysosome-like compartment and large coxiella-containing vacuole formation occure, and vacuole can occupy nearly the whole cytoplasm of the host cell. Survivance of infected cells is important for chronic infection with C. burnetii. C. burnetii elongate the viability of host cell by two ways: it actively inhibits apoptotic signal cascades and induce pro-survival factors. Exceptthat C. burnetii involves autophagic pathway during coxiella-containing vacuole formation, and induction of autophagy promotes pathogen replication. During infection C. burnetii translocates effector substrates from bacterial cytosole to euca ryotic host cell cytosole using type IV secretion system, where effectors modulate host cell proteins. Overall approximately 130 secreted effectors of type IV transport system, but function of most of them remains unknown to date. Specific sec reted proteins for variety of strains and isolates were identified, confirmed that certain pathotypes of C. burnetii can exist. Identification and

  12. The Autonomous Pathogen Detection System

    Energy Technology Data Exchange (ETDEWEB)

    Dzenitis, J M; Makarewicz, A J

    2009-01-13

    We developed, tested, and now operate a civilian biological defense capability that continuously monitors the air for biological threat agents. The Autonomous Pathogen Detection System (APDS) collects, prepares, reads, analyzes, and reports results of multiplexed immunoassays and multiplexed PCR assays using Luminex{copyright} xMAP technology and flow cytometer. The mission we conduct is particularly demanding: continuous monitoring, multiple threat agents, high sensitivity, challenging environments, and ultimately extremely low false positive rates. Here, we introduce the mission requirements and metrics, show the system engineering and analysis framework, and describe the progress to date including early development and current status.

  13. Pathogenic mechanisms in centronuclear myopathies

    Directory of Open Access Journals (Sweden)

    Heinz eJungbluth

    2014-12-01

    Full Text Available Centronuclear myopathies (CNMs are a genetically heterogeneous group of inherited neuromuscular disorders characterized by clinical features of a congenital myopathy and abundant central nuclei as the most prominent histopathological feature. The most common forms of congenital myopathies with central nuclei have been attributed to X-linked recessive mutations in the MTM1 gene encoding myotubularin (X-linked myotubular myopathy, XLMTM, autosomal-dominant mutations in the DNM2 gene encoding dynamin-2 and the BIN1 gene encoding amphiphysin-2 (also named bridging integrator-1, BIN1, or SH3P9, and autosomal-recessive mutations in BIN1, the RYR1 gene encoding the skeletal muscle ryanodine receptor, and the TTN gene encoding titin. Models to study and rescue the affected cellular pathways are now available in yeast, C. elegans, drosophila, zebrafish, mouse and dog. Defects in membrane trafficking have emerged as a key pathogenic mechanisms, with aberrant T-tubule formation, abnormalities of triadic assembly and disturbance of the excitation-contraction machinery the main downstream effects studied to date. Abnormal autophagy has recently been recognized as another important collateral of defective membrane trafficking in different genetic forms of CNM, suggesting an intriguing link to primary disorders of defective autophagy with overlapping histopathological features.The following review will provide an overview of clinical, histopathological and genetic aspects of the CNMs in the context of the key pathogenic mechanism, outline unresolved questions and indicate promising future lines of enquiry.

  14. Viruses of plant pathogenic fungi.

    Science.gov (United States)

    Ghabrial, Said A; Suzuki, Nobuhiro

    2009-01-01

    Mycoviruses are widespread in all major groups of plant pathogenic fungi. They are transmitted intracellularly during cell division, sporogenesis, and cell fusion, but apparently lack an extracellular route for infection. Their natural host ranges are limited to individuals within the same or closely related vegetative compatibility groups. Recent advances, however, allowed the establishment of experimental host ranges for a few mycoviruses. Although the majority of known mycoviruses have dsRNA genomes that are packaged in isometric particles, an increasing number of usually unencapsidated mycoviruses with positive-strand RNA genomes have been reported. We discuss selected mycoviruses that cause debilitating diseases and/or reduce the virulence of their phytopathogenic fungal hosts. Such fungal-virus systems are valuable for the development of novel biocontol strategies and for gaining an insight into the molecular basis of fungal virulence. The availability of viral and host genome sequences and of transformation and transfection protocols for some plant pathogenic fungi will contribute to progress in fungal virology.

  15. Potentially pathogenic, pathogenic, and allergenic moulds in the urban soils

    Directory of Open Access Journals (Sweden)

    Đukić Dragutin A.

    2011-01-01

    Full Text Available The dynamics of soil mould populations that can compromise the human immune system was evaluated in experimental plots located at different distances (100, 300, 500, 700 and 900 m from the main source of pollution - the Podgorica Aluminum Plant. Soil samples were collected in July and October 2008 from three different plot zones at a depth of 0-10 cm. The count of potentially pathogenic, keratinolytic and allergenic (melaninogenic moulds was assessed, which can significantly contribute to both diagnosis and prophylaxis. The count of medically important moulds was higher in the urban soil than in the unpolluted (control soil. Their count decreased with increasing distance from the main pollution source (PAP. Their abundance in the soil was considerably higher in autumn than in spring.

  16. Risk of Human Infections With Highly Pathogenic H5N2 and Low Pathogenic H7N1 Avian Influenza Strains During Outbreaks in Ostriches in South Africa.

    Science.gov (United States)

    Venter, Marietjie; Treurnicht, Florette K; Buys, Amelia; Tempia, Stefano; Samudzi, Rudo; McAnerney, Johanna; Jacobs, Charlene A; Thomas, Juno; Blumberg, Lucille

    2017-09-15

    Risk factors for human infection with highly pathogenic (HP) and low-pathogenic (LP) avian influenza (AI) H5N2 and H7N1 were investigated during outbreaks in ostriches in the Western Cape province, South Africa. Serum surveys were conducted for veterinarians, farmworkers, and laboratory and abattoir workers involved in 2 AI outbreaks in the Western Cape province: (1) controlling and culling of 42000 ostriches during (HPAI)H5N2 outbreaks in ostriches (2011) (n = 207); (2) movement control during (LPAI)H7N1 outbreaks in 2012 (n = 66). A third serosurvey was conducted on state veterinarians from across the country in 2012 tasked with disease control in general (n = 37). Antibodies to H5 and H7 were measured by means of hemagglutination inhibition and microneutralization assays, with microneutralization assay titers >40 considered positive. Two of 207 (1%) participants were seropositive for H5 and 4 of 207 (2%) for H7 in 2011, compared with 1 of 66 (1.5%) and 8 of 66 (13%) in 2012. Although individuals in all professions tested seropositive, abattoir workers (10 of 97; 10.3%) were significantly more at risk of influenza A(H7N1) infection (P = .001) than those in other professions (2 of 171;1.2%). Among state veterinarians, 4 of 37(11%) were seropositive for H7 and 1 of 37 (2.7%) for H5. Investigations of (LP)H7N1-associated fatalities in wild birds and quarantined exotic birds in Gauteng, AI outbreaks in poultry in KwaZulu-Natal, and ostriches in Western Cape province provide possible exposure events. (LPAI)H7N1 strains pose a greater infection-risk than (HPAI)H5N2 strains to persons involved in control of outbreaks in infected birds, with ostrich abattoir workers at highest risk. © The Author 2017. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.

  17. Factors controlling pathogen destruction during anaerobic digestion of biowastes

    International Nuclear Information System (INIS)

    Smith, S.R.; Lang, N.L.; Cheung, K.H.M.; Spanoudaki, K.

    2005-01-01

    Anaerobic digestion is the principal method of stabilising biosolids from urban wastewater treatment in the UK, and it also has application for the treatment of other types of biowaste. Increasing awareness of the potential risks to human and animal health from environmental sources of pathogens has focused attention on the efficacy of waste treatment processes at destroying pathogenic microorganisms in biowastes recycled to agricultural land. The degree of disinfection achieved by a particular anaerobic digester is influenced by a variety of interacting operational variables and conditions, which can often deviate from the ideal. Experimental investigations demonstrate that Escherichia coli and Salmonella spp. are not damaged by mesophilic temperatures, whereas rapid inactivation occurs by thermophilic digestion. A hydraulic, biokinetic and thermodynamic model of pathogen inactivation during anaerobic digestion showed that a 2 log 10 reduction in E. coli (the minimum removal required for agricultural use of conventionally treated biosolids) is likely to challenge most conventional mesophilic digesters, unless strict maintenance and management practices are adopted to minimise dead zones and by-pass flow. Efficient mixing and organic matter stabilisation are the main factors controlling the rate of inactivation under mesophilic conditions and not a direct effect of temperature per se on pathogenic organisms

  18. Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens.

    Directory of Open Access Journals (Sweden)

    Matthew T G Holden

    2009-03-01

    Full Text Available The continued evolution of bacterial pathogens has major implications for both human and animal disease, but the exchange of genetic material between host-restricted pathogens is rarely considered. Streptococcus equi subspecies equi (S. equi is a host-restricted pathogen of horses that has evolved from the zoonotic pathogen Streptococcus equi subspecies zooepidemicus (S. zooepidemicus. These pathogens share approximately 80% genome sequence identity with the important human pathogen Streptococcus pyogenes. We sequenced and compared the genomes of S. equi 4047 and S. zooepidemicus H70 and screened S. equi and S. zooepidemicus strains from around the world to uncover evidence of the genetic events that have shaped the evolution of the S. equi genome and led to its emergence as a host-restricted pathogen. Our analysis provides evidence of functional loss due to mutation and deletion, coupled with pathogenic specialization through the acquisition of bacteriophage encoding a phospholipase A(2 toxin, and four superantigens, and an integrative conjugative element carrying a novel iron acquisition system with similarity to the high pathogenicity island of Yersinia pestis. We also highlight that S. equi, S. zooepidemicus, and S. pyogenes share a common phage pool that enhances cross-species pathogen evolution. We conclude that the complex interplay of functional loss, pathogenic specialization, and genetic exchange between S. equi, S. zooepidemicus, and S. pyogenes continues to influence the evolution of these important streptococci.

  19. Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens.

    Science.gov (United States)

    Holden, Matthew T G; Heather, Zoe; Paillot, Romain; Steward, Karen F; Webb, Katy; Ainslie, Fern; Jourdan, Thibaud; Bason, Nathalie C; Holroyd, Nancy E; Mungall, Karen; Quail, Michael A; Sanders, Mandy; Simmonds, Mark; Willey, David; Brooks, Karen; Aanensen, David M; Spratt, Brian G; Jolley, Keith A; Maiden, Martin C J; Kehoe, Michael; Chanter, Neil; Bentley, Stephen D; Robinson, Carl; Maskell, Duncan J; Parkhill, Julian; Waller, Andrew S

    2009-03-01

    The continued evolution of bacterial pathogens has major implications for both human and animal disease, but the exchange of genetic material between host-restricted pathogens is rarely considered. Streptococcus equi subspecies equi (S. equi) is a host-restricted pathogen of horses that has evolved from the zoonotic pathogen Streptococcus equi subspecies zooepidemicus (S. zooepidemicus). These pathogens share approximately 80% genome sequence identity with the important human pathogen Streptococcus pyogenes. We sequenced and compared the genomes of S. equi 4047 and S. zooepidemicus H70 and screened S. equi and S. zooepidemicus strains from around the world to uncover evidence of the genetic events that have shaped the evolution of the S. equi genome and led to its emergence as a host-restricted pathogen. Our analysis provides evidence of functional loss due to mutation and deletion, coupled with pathogenic specialization through the acquisition of bacteriophage encoding a phospholipase A(2) toxin, and four superantigens, and an integrative conjugative element carrying a novel iron acquisition system with similarity to the high pathogenicity island of Yersinia pestis. We also highlight that S. equi, S. zooepidemicus, and S. pyogenes share a common phage pool that enhances cross-species pathogen evolution. We conclude that the complex interplay of functional loss, pathogenic specialization, and genetic exchange between S. equi, S. zooepidemicus, and S. pyogenes continues to influence the evolution of these important streptococci.

  20. The Candida Pathogenic Species Complex

    Science.gov (United States)

    Turner, Siobhán A.; Butler, Geraldine

    2014-01-01

    Candida species are the most common causes of fungal infection. Approximately 90% of infections are caused by five species: Candida albicans, Candida glabrata, Candida tropicalis, Candida parapsilosis, and Candida krusei. Three (C. albicans, C. tropicalis, and C. parapsilosis) belong to the CTG clade, in which the CTG codon is translated as serine and not leucine. C. albicans remains the most commonly isolated but is decreasing relative to the other species. The increasing incidence of C. glabrata is related to its reduced susceptibility to azole drugs. Genome analysis suggests that virulence in the CTG clade is associated with expansion of gene families, particularly of cell wall genes. Similar independent processes took place in the C. glabrata species group. Gene loss and expansion in an ancestor of C. glabrata may have resulted in preadaptations that enabled pathogenicity. PMID:25183855

  1. Molecular detection of foodborne pathogens

    DEFF Research Database (Denmark)

    Josefsen, Mathilde Hartmann

    of the VBNC state, and would thus be able to assess the outcome and impact of increasingly applied post-slaughter reduction strategies. A real-time PCR-based method for detection of Salmonella was optimized following a diversified approach to enable the shortest time of analysis possible. Positive effects...... of these pathogens in the food chain, in order to improve intervention strategies and make more effective the control of production lines and single food items. To serve this purpose, rapid and reliable detection and quantification methods are imperative. The culture-based standard methods currently applied...... for detection and enumeration of Salmonella and Campylobacter are time-consuming and laborious. They lack specificity and do not enable detection of viable but non-culturable (VBNC) bacteria. The focus of the present thesis has been development and validation of PCR-based detection methods for Salmonella...

  2. Molecular detection of foodborne pathogens

    DEFF Research Database (Denmark)

    Josefsen, Mathilde Hartmann

    .84) was obtained between the Campylobacter counts obtained by PMA-PCR and culture, indicating that the method presents as a reliable tool for producing accurate quantitative data on viable Campylobacter. DNA from dead cells was not detected by the proposed method, however, it recognized the infectious potential...... of these pathogens in the food chain, in order to improve intervention strategies and make more effective the control of production lines and single food items. To serve this purpose, rapid and reliable detection and quantification methods are imperative. The culture-based standard methods currently applied...... for detection and enumeration of Salmonella and Campylobacter are time-consuming and laborious. They lack specificity and do not enable detection of viable but non-culturable (VBNC) bacteria. The focus of the present thesis has been development and validation of PCR-based detection methods for Salmonella...

  3. Peptide Antibiotics for ESKAPE Pathogens

    DEFF Research Database (Denmark)

    Thomsen, Thomas Thyge

    Multi-drug resistance to antibiotics represents a global health challenge that results in increased morbidity and mortality rates. The annual death-toll is >700.000 people world-wide, rising to ~10 million by 2050. New antibiotics are lacking, and few are under development as return on investment...... is considered poor compared to medicines for lifestyle diseases. According to the WHO we could be moving towards a post-antibiotic era in which previously treatable infections become fatal. Of special importance are multidrug resistant bacteria from the ESKAPE group (Enterococcus faecium, Staphylococcus aureus...... and toxicity by utilizing of the fruit fly Drosophila melanogaster as a whole animal model. This was carried out by testing of antimicrobial peptides targeting Gram-positive bacteria exemplified by the important human pathogen methicillin resistant S. aureus (MRSA). The peptide BP214 was developed from...

  4. Molecular diagnostics of foodborne pathogens

    DEFF Research Database (Denmark)

    Hansen, Trine

    or accidental contamination of food, feed and water supplies pose a threat to human health worldwide and the need for generic detection methods that can screen for many pathogens at the time are highly desirable. A metagenomics based direct 16S rDNA sequencing approach was evaluated as a diagnostic tool...... of Salmonellahas an impact on the ability of Salmonellato attach to a pork meat surface and subsequently the possibility of contributing to cross contamination in the slaughter-line. Cells that were grown immobilized prior application on a pork meat surface were found to be more easily removed. In the pork...... processing, Salmonellamight appear in an immobilized state on the pork surfaces where low attachment ability might pose a risk for cross contamination. A stronger attachment to a surface makes on the other hand decontamination steps more difficult. The attachment ability of Salmonellacould to some extend...

  5. Human diseases associated with fish pathogens

    OpenAIRE

    VATSOS N. Ioannis; ANGELIDIS Panagiotis

    2011-01-01

    Until recently, most cases of humans been affected by fish pathogens, bacterial and parasitic, were limited in certain countries, either due to the inappropriate sanitary measures used in those areas, or due to the local habit of eating raw or undercooked fish. However, as new reliable methods to identify fish pathogens in samples collected from sick humans have been developed, the confirmed cases worldwide have increased. The most common fish bacterial pathogens that can affect humans belong...

  6. Heme Synthesis and Acquisition in Bacterial Pathogens

    OpenAIRE

    Choby, Jacob E.; Skaar, Eric P.

    2016-01-01

    Bacterial pathogens require the iron-containing cofactor heme to cause disease. Heme is essential to the function of hemoproteins, which are involved in energy generation by the electron transport chain, detoxification of host immune effectors, and other processes. During infection, bacterial pathogens must synthesize heme or acquire heme from the host; however, host heme is sequestered in high-affinity hemoproteins. Pathogens have evolved elaborate strategies to acquire heme from host source...

  7. Antigenic variation in vector-borne pathogens.

    OpenAIRE

    Barbour, A. G.; Restrepo, B. I.

    2000-01-01

    Several pathogens of humans and domestic animals depend on hematophagous arthropods to transmit them from one vertebrate reservoir host to another and maintain them in an environment. These pathogens use antigenic variation to prolong their circulation in the blood and thus increase the likelihood of transmission. By convergent evolution, bacterial and protozoal vector-borne pathogens have acquired similar genetic mechanisms for successful antigenic variation. Borrelia spp. and Anaplasma marg...

  8. PATHOGENIC PROPERTIES OF INFECTIOUS BURSAL DISEASE VACCINES

    Directory of Open Access Journals (Sweden)

    Iftikhar Hussain, Atif Nisar Ahmad, M. Ashfaque, M.Shahid Mahmood and Masood Akhtar1

    2001-09-01

    Full Text Available The study was conducted to test the pathogenic effect of six commercially available infectious bursal disease (IBD vaccines claimed to be intermediate in their pathogenicity. Three week old chickens were inoculated with these vaccines. The pathogenic effects of the IBD vaccines were evaluated by hemorrhages on the thigh and breast muscles, bursa weight to body weight ratio and virulence; two of the strain were found to be highly virulent; two others were moderate and two could be classified as mild.

  9. Stomata and pathogens: Warfare at the gates

    OpenAIRE

    Gudesblat, Gustavo E; Torres, Pablo S; Vojnov, Adrian A

    2009-01-01

    Bacteria and fungi are capable of triggering stomatal closure through pathogen-associated molecular patterns (PAMPs), which prevents penetration through these pores. Therefore, the stomata can be considered part of the plant innate immune response. Some pathogens have evolved mechanisms to evade stomatal defense. The bacterial pathogen Xanthomonas campestris pv. campestris (Xcc), which infects plants of the Brassicaceae family mainly through hydathodes, has also been reported to infect plants...

  10. Land application of sewage sludge: Pathogen issues

    International Nuclear Information System (INIS)

    Chang, A.C.

    1997-01-01

    Diseases transmitted via the faecal-oral exposure route cause severe gastroenteric disorders, and large numbers of causative organisms are discharged with the faecal matter of infected individuals. For this reason, pathogenic bacteria, viruses, protozoa, or helminths, are always found in sewage sludge. If not properly treated for use in agriculture, sludge can be a source of pathogenic contamination. Radiation is an attractive method to reduce the numbers of microorganisms in sewage sludge. Routine examination for pathogens is not practised nor recommended because complicated and costly procedures are involved. Instead, an indicator organism is usually assayed and enumerated. In this paper, methods are discussed for the investigation of pathogens in sewage sludge. (author)

  11. Sumoylation at the Host-Pathogen Interface

    Directory of Open Access Journals (Sweden)

    Van G. Wilson

    2012-04-01

    Full Text Available Many viral proteins have been shown to be sumoylated with corresponding regulatory effects on their protein function, indicating that this host cell modification process is widely exploited by viral pathogens to control viral activity. In addition to using sumoylation to regulate their own proteins, several viral pathogens have been shown to modulate overall host sumoylation levels. Given the large number of cellular targets for SUMO addition and the breadth of critical cellular processes that are regulated via sumoylation, viral modulation of overall sumoylation presumably alters the cellular environment to ensure that it is favorable for viral reproduction and/or persistence. Like some viruses, certain bacterial plant pathogens also target the sumoylation system, usually decreasing sumoylation to disrupt host anti-pathogen responses. The recent demonstration that Listeria monocytogenes also disrupts host sumoylation, and that this is required for efficient infection, extends the plant pathogen observations to a human pathogen and suggests that pathogen modulation of host sumoylation may be more widespread than previously appreciated. This review will focus on recent aspects of how pathogens modulate the host sumoylation system and how this benefits the pathogen.

  12. A novel molecular toolkit for rapid detection of the pathogen and primary vector of thousand cankers disease.

    Directory of Open Access Journals (Sweden)

    Emel Oren

    Full Text Available Thousand Cankers Disease (TCD of Juglans and Pterocarya (Juglandaceae involves a fungal pathogen, Geosmithia morbida, and a primary insect vector, Pityophthorus juglandis. TCD was described originally from dying Juglans nigra trees in the western United States (USA, but it was reported subsequently from the eastern USA and northern Italy. The disease is often difficult to diagnose due to the absence of symptoms or signs on the bark surface of the host. Furthermore, disease symptoms can be confused with those caused by other biotic and abiotic agents. Thus, there is a critical need for a method for rapid detection of the pathogen and vector of TCD. Using species-specific microsatellite DNA markers, we developed a molecular protocol for the detection of G. morbida and P. juglandis. To demonstrate the utility of the method for delineating TCD quarantine zones, we tested whether geographical occurrence of symptoms and signs of TCD was correlated with molecular evidence for the presence of the cryptic TCD organisms. A total of 1600 drill cores were taken from branch sections collected from three regions (n = 40 trees for each location: California-J. hindsii (heavy disease incidence; Tennessee-J. nigra (mild disease incidence; and outside the known TCD zone (Missouri-J. nigra, no record of the disease. California samples had the highest incidence of the TCD organisms (85%, 34/40. Tennessee had intermediate incidence (42.5%, 17/40, whereas neither organism was detected in samples from Missouri. The low cost molecular protocol developed here has a high degree of sensitivity and specificity, and it significantly reduces sample-processing time, making the protocol a powerful tool for rapid detection of TCD.

  13. Population genomics of fungal and oomycete pathogens

    Science.gov (United States)

    We are entering a new era in plant pathology where whole-genome sequences of many individuals of a pathogen species are becoming readily available. This era of pathogen population genomics will provide new opportunities and challenges, requiring new computational and analytical tools. Population gen...

  14. Immunity to plant pathogens and iron homeostasis.

    Science.gov (United States)

    Aznar, Aude; Chen, Nicolas W G; Thomine, Sebastien; Dellagi, Alia

    2015-11-01

    Iron is essential for metabolic processes in most living organisms. Pathogens and their hosts often compete for the acquisition of this nutrient. However, iron can catalyze the formation of deleterious reactive oxygen species. Hosts may use iron to increase local oxidative stress in defense responses against pathogens. Due to this duality, iron plays a complex role in plant-pathogen interactions. Plant defenses against pathogens and plant response to iron deficiency share several features, such as secretion of phenolic compounds, and use common hormone signaling pathways. Moreover, fine tuning of iron localization during infection involves genes coding iron transport and iron storage proteins, which have been shown to contribute to immunity. The influence of the plant iron status on the outcome of a given pathogen attack is strongly dependent on the nature of the pathogen infection strategy and on the host species. Microbial siderophores emerged as important factors as they have the ability to trigger plant defense responses. Depending on the plant species, siderophore perception can be mediated by their strong iron scavenging capacity or possibly via specific recognition as pathogen associated molecular patterns. This review highlights that iron has a key role in several plant-pathogen interactions by modulating immunity. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  15. Foliar fungal pathogens and grassland biodiversity

    NARCIS (Netherlands)

    Allan, E.; Ruijven, van J.; Crawley, M.J.

    2010-01-01

    By attacking plants, herbivorous mammals, insects, and belowground pathogens are known to play an important role in maintaining biodiversity in grasslands. Foliar fungal pathogens are ubiquitous in grassland ecosystems, but little is known about their role as drivers of community composition and

  16. 76 FR 24793 - Highly Pathogenic Avian Influenza

    Science.gov (United States)

    2011-05-03

    ... Inspection Service 9 CFR Parts 93, 94, and 95 RIN 0579-AC36 Highly Pathogenic Avian Influenza AGENCY: Animal... products from regions where any subtype of highly pathogenic avian influenza is considered to exist. The... vaccinated for certain types of avian influenza, or that have moved through regions where any subtype of...

  17. Bacterial reproductive pathogens of cats and dogs.

    Science.gov (United States)

    Graham, Elizabeth M; Taylor, David J

    2012-05-01

    With the notable exception of Brucella canis, exogenous bacterial pathogens are uncommon causes of reproductive disease in cats and dogs. Most bacterial reproductive infections are endogenous, and predisposing factors for infection are important. This article reviews the etiology, pathogenesis, clinical presentation, diagnosis, treatment, and public health significance of bacterial reproductive pathogens in cats and dogs.

  18. Arthropods vector grapevine trunk disease pathogens.

    Science.gov (United States)

    Moyo, P; Allsopp, E; Roets, F; Mostert, L; Halleen, F

    2014-10-01

    Arthropod-mediated dispersal of pathogens is known in many cropping systems but has never been demonstrated for grapevine trunk disease pathogens. Arthropods from vineyards were screened for the presence of pathogens associated with Petri disease and esca using cultural and molecular techniques. The ability of the most abundant pathogen-carrying species to inoculate healthy grapevine vascular tissues was also determined. Millipedes and ants were allowed to associate with a DsRed- Express-transformed Phaeomoniella chlamydospora, after which they were exposed to freshly pruned healthy grapevines under controlled conditions and wounds were monitored for subsequent infection. In addition, the possibility of millipede excreta, commonly found on pruning wounds in the field, to act as inoculum source was determined. A diverse arthropod fauna was associated with declining grapevines and many of these carried trunk disease pathogens. However, spiders, the ant Crematogaster peringueyi, and the millipede Ommattoiulus moreleti were the most abundant pathogen carriers. The ant and millipede species fed on pruning wound sap and effectively transmitted trunk disease pathogens. Millipede excreta contained viable spores of Phaeomoniella chlamydospora and may serve as an inoculum source. Numerous arthropods, including beneficial predators, are potential vectors of grapevine trunk disease pathogens. Our results highlight the need for an integrated approach, including targeted management of ants and millipedes at the time of pruning, to limit the spread of grapevine trunk diseases.

  19. Tracing pathogens in the food chain

    NARCIS (Netherlands)

    Brul, S.; Fratamico, P.M.; McMeekin, T.A.

    2010-01-01

    Successful methods for the detection and investigation of outbreaks of foodborne disease are essential for ensuring consumer safety. Increased understanding of the transmission of pathogens in food chains will also assist efforts to safeguard public health. Tracing pathogens in the food chain

  20. Innate host defense against intracellular pathogens

    NARCIS (Netherlands)

    Vaart, Michiel van der

    2013-01-01

    This thesis focuses on the recognition of pathogenic bacteria and the defense mechanisms that are activated during the innate immune response to infection. Detection of pathogens, such as bacteria, viruses, and parasites, depends on receptors that bind to evolutionary conserved structures on their

  1. Pathogens' toolbox to manipulate human complement.

    Science.gov (United States)

    Fernández, Francisco J; Gómez, Sara; Vega, M Cristina

    2017-12-14

    The surveillance and pathogen fighting functions of the complement system have evolved to protect mammals from life-threatening infections. In turn, pathogens have developed complex molecular mechanisms to subvert, divert and evade the effector functions of the complement. The study of complement immunoevasion by pathogens sheds light on their infection drivers, knowledge that is essential to implement therapies. At the same time, complement evasion also acts as a discovery ground that reveals important aspects of how complement works under physiological conditions. In recent years, complex interrelationships between infection insults and the onset of autoimmune and complement dysregulation diseases have led to propose that encounters with pathogens can act as triggering factors for disease. The correct management of these diseases involves the recognition of their triggering factors and the development and administration of complement-associated molecular therapies. Even more recently, unsuspected proteins from pathogens have been shown to possess moonlighting functions as virulence factors, raising the possibility that behind the first line of virulence factors there be many more pathogen proteins playing secondary, helping and supporting roles for the pathogen to successfully establish infections. In an era where antibiotics have a progressively reduced effect on the management and control of infectious diseases worldwide, knowledge on the mechanisms of pathogenic invasion and evasion look more necessary and pressing than ever. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. Heme Synthesis and Acquisition in Bacterial Pathogens.

    Science.gov (United States)

    Choby, Jacob E; Skaar, Eric P

    2016-08-28

    Bacterial pathogens require the iron-containing cofactor heme to cause disease. Heme is essential to the function of hemoproteins, which are involved in energy generation by the electron transport chain, detoxification of host immune effectors, and other processes. During infection, bacterial pathogens must synthesize heme or acquire heme from the host; however, host heme is sequestered in high-affinity hemoproteins. Pathogens have evolved elaborate strategies to acquire heme from host sources, particularly hemoglobin, and both heme acquisition and synthesis are important for pathogenesis. Paradoxically, excess heme is toxic to bacteria and pathogens must rely on heme detoxification strategies. Heme is a key nutrient in the struggle for survival between host and pathogen, and its study has offered significant insight into the molecular mechanisms of bacterial pathogenesis. Copyright © 2016 Elsevier Ltd. All rights reserved.

  3. Periodontal pathogens in atheromatous plaque.

    Science.gov (United States)

    Rath, Saroj K; Mukherjee, Manish; Kaushik, R; Sen, Sourav; Kumar, Mukesh

    2014-01-01

    There has been increasing attention paid in recent years to the possibility that oral bacterial infection, particularly periodontal disease may influence the initiation and or progression of systemic diseases. These studies confirm the observation that heart disease is the most commonly found systemic condition in patients with periodontal disease. Moreover, the literature has also highlighted substantial evidence indicating the presence of Gram-negative periodontal pathogens in atheromatous plaques. This study intends to investigate the possible association between periodontal health and coronary artery disease by evaluating periodontal status, association between the periodontal plaque and coronary atheromatous plaques for presence of micro-organisms such as, Aggregatibacter actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, and Tannerella forsythia. A case-control study was designed with seven patients who had undergone coronary endarterectomy for cardiovascular disease and 28 controls. The periodontal examination for cases was performed 1 day before vascular surgery and the controls were clinically examined. The atheromatous plaque sample collected during endarterectomy and the intraoral plaque samples were subjected to polymerase chain reaction for identification of A. actinomycetemcomitans, P. gingivalis, P. intermedia and T. forsythia. The presence of periodontal bacteria DNA in coronary atheromatous plaques and sub-gingival plaque samples of the same patients was confirmed by this study. CONCLUSION A correlation was established between putative bacteria contributing to atheromatous plaques and species associated with periodontal disease. One particularly important study to be carried out is the investigation of a possible clinically meaningful reduction in coronary heart disease resulting from the prevention or treatment of periodontal disease.

  4. Quorum Sensing of Periodontal Pathogens.

    Science.gov (United States)

    Plančak, Darije; Musić, Larisa; Puhar, Ivan

    2015-09-01

    The term 'quorum sensing' describes intercellular bacterial communication which regulates bacterial gene expression according to population cell density. Bacteria produce and secrete small molecules, named autoinducers, into the intercellular space. The concentration of these molecules increases as a function of population cell density. Once the concentration of the stimulatory threshold is reached, alteration in gene expression occurs. Gram-positive and Gram-negative bacteria possess different types of quorum sensing systems. Canonical LuxI/R-type/acyl homoserine lactone mediated quorum sensing system is the best studied quorum sensing circuit and is described in Gram-negative bacteria which employ it for inter-species communication mostly. Gram-positive bacteria possess a peptide-mediated quorum sensing system. Bacteria can communicate within their own species (intra-species) but also between species (inter-species), for which they employ an autoinducer-2 quorum sensing system which is called the universal language of the bacteria. Periodontal pathogenic bacteria possess AI-2 quorum sensing systems. It is known that they use it for regulation of biofilm formation, iron uptake, stress response and virulence factor expression. A better understanding of bacterial communication mechanisms will allow the targeting of quorum sensing with quorum sensing inhibitors to prevent and control disease.

  5. Periodontal pathogens in atheromatous plaque

    Directory of Open Access Journals (Sweden)

    Saroj K. Rath

    2014-01-01

    Full Text Available Background: There has been increasing attention paid in recent years to the possibility that oral bacterial infection, particularly periodontal disease may influence the initiation and or progression of systemic diseases. These studies confirm the observation that heart disease is the most commonly found systemic condition in patients with periodontal disease. Moreover, the literature has also highlighted substantial evidence indicating the presence of Gram-negative periodontal pathogens in atheromatous plaques. Aim: This study intends to investigate the possible association between periodontal health and coronary artery disease by evaluating periodontal status, association between the periodontal plaque and coronary atheromatous plaques for presence of micro-organisms such as, Aggregatibacter actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, and Tannerella forsythia. Materials and methods: A case-control study was designed with seven patients who had undergone coronary endarterectomy for cardiovascular disease and 28 controls. The periodontal examination for cases was performed 1 day before vascular surgery and the controls were clinically examined. The atheromatous plaque sample collected during endarterectomy and the intraoral plaque samples were subjected to polymerase chain reaction for identification of A. actinomycetemcomitans, P. gingivalis, P. intermedia and T. forsythia. Results: The presence of periodontal bacteria DNA in coronary atheromatous plaques and sub-gingival plaque samples of the same patients was confirmed by this study. CONCLUSION A correlation was established between putative bacteria contributing to atheromatous plaques and species associated with periodontal disease. One particularly important study to be carried out is the investigation of a possible clinically meaningful reduction in coronary heart disease resulting from the prevention or treatment of periodontal disease.

  6. Efferocytosis of Pathogen-Infected Cells

    Directory of Open Access Journals (Sweden)

    Niloofar Karaji

    2017-12-01

    Full Text Available The prompt and efficient clearance of unwanted and abnormal cells by phagocytes is termed efferocytosis and is crucial for organism development, maintenance of tissue homeostasis, and regulation of the immune system. Dying cells are recognized by phagocytes through pathways initiated via “find me” signals, recognition via “eat me” signals and down-modulation of regulatory “don’t eat me” signals. Pathogen infection may trigger cell death that drives phagocytic clearance in an immunologically silent, or pro-inflammatory manner, depending on the mode of cell death. In many cases, efferocytosis is a mechanism for eliminating pathogens and pathogen-infected cells; however, some pathogens have subverted this process and use efferocytic mechanisms to avoid innate immune detection and assist phagocyte infection. In parallel, phagocytes can integrate signals received from infected dying cells to elicit the most appropriate effector response against the infecting pathogen. This review focuses on pathogen-induced cell death signals that drive infected cell recognition and uptake by phagocytes, and the outcomes for the infected target cell, the phagocyte, the pathogen and the host.

  7. Pathogen webs in collapsing honey bee colonies.

    Directory of Open Access Journals (Sweden)

    R Scott Cornman

    Full Text Available Recent losses in honey bee colonies are unusual in their severity, geographical distribution, and, in some cases, failure to present recognized characteristics of known disease. Domesticated honey bees face numerous pests and pathogens, tempting hypotheses that colony collapses arise from exposure to new or resurgent pathogens. Here we explore the incidence and abundance of currently known honey bee pathogens in colonies suffering from Colony Collapse Disorder (CCD, otherwise weak colonies, and strong colonies from across the United States. Although pathogen identities differed between the eastern and western United States, there was a greater incidence and abundance of pathogens in CCD colonies. Pathogen loads were highly covariant in CCD but not control hives, suggesting that CCD colonies rapidly become susceptible to a diverse set of pathogens, or that co-infections can act synergistically to produce the rapid depletion of workers that characterizes the disorder. We also tested workers from a CCD-free apiary to confirm that significant positive correlations among pathogen loads can develop at the level of individual bees and not merely as a secondary effect of CCD. This observation and other recent data highlight pathogen interactions as important components of bee disease. Finally, we used deep RNA sequencing to further characterize microbial diversity in CCD and non-CCD hives. We identified novel strains of the recently described Lake Sinai viruses (LSV and found evidence of a shift in gut bacterial composition that may be a biomarker of CCD. The results are discussed with respect to host-parasite interactions and other environmental stressors of honey bees.

  8. Pathogen webs in collapsing honey bee colonies.

    Science.gov (United States)

    Cornman, R Scott; Tarpy, David R; Chen, Yanping; Jeffreys, Lacey; Lopez, Dawn; Pettis, Jeffery S; vanEngelsdorp, Dennis; Evans, Jay D

    2012-01-01

    Recent losses in honey bee colonies are unusual in their severity, geographical distribution, and, in some cases, failure to present recognized characteristics of known disease. Domesticated honey bees face numerous pests and pathogens, tempting hypotheses that colony collapses arise from exposure to new or resurgent pathogens. Here we explore the incidence and abundance of currently known honey bee pathogens in colonies suffering from Colony Collapse Disorder (CCD), otherwise weak colonies, and strong colonies from across the United States. Although pathogen identities differed between the eastern and western United States, there was a greater incidence and abundance of pathogens in CCD colonies. Pathogen loads were highly covariant in CCD but not control hives, suggesting that CCD colonies rapidly become susceptible to a diverse set of pathogens, or that co-infections can act synergistically to produce the rapid depletion of workers that characterizes the disorder. We also tested workers from a CCD-free apiary to confirm that significant positive correlations among pathogen loads can develop at the level of individual bees and not merely as a secondary effect of CCD. This observation and other recent data highlight pathogen interactions as important components of bee disease. Finally, we used deep RNA sequencing to further characterize microbial diversity in CCD and non-CCD hives. We identified novel strains of the recently described Lake Sinai viruses (LSV) and found evidence of a shift in gut bacterial composition that may be a biomarker of CCD. The results are discussed with respect to host-parasite interactions and other environmental stressors of honey bees.

  9. Laser inactivation of pathogenic viruses in water

    Science.gov (United States)

    Grishkanich, Alexander; Zhevlakov, Alexander; Kascheev, Sergey; Sidorov, Igor; Ruzankina, Julia; Yakovlev, Alexey; Mak, Andrey

    2016-03-01

    Currently there is a situation that makes it difficult to provide the population with quality drinking water for the sanitary-hygienic requirements. One of the urgent problems is the need for water disinfection. Since the emergence of microorganisms that are pathogens transmitted through water such as typhoid, cholera, etc. requires constant cleansing of waters against pathogenic bacteria. In the water treatment process is destroyed up to 98% of germs, but among the remaining can be pathogenic viruses, the destruction of which requires special handling. As a result, the conducted research the following methods have been proposed for combating harmful microorganisms: sterilization of water by laser radiation and using a UV lamp.

  10. [Suspected pathogenic mutation identified in two cases with oculocutaneous albinism].

    Science.gov (United States)

    He, Jiangmei; Zheng, Meiling; Zhang, Guilin; Hua, Ailing

    2015-08-01

    To detect potential mutations in genes related with non-syndromic oculocutaneous albinism I-IV and ocular albinism type I in two couples who had given births to children with albinism. All exons of the non-syndromic albinism related genes TYR, OCA2, TYRP-1, MITF, SLC45A2 and GPR143 were subjected to deep sequencing. The results were verified with Sanger sequencing. For the two female carriers, the coding region of the TYR gene was found to harbor a frameshift mutation c.925_926insC, which was also suspected to have been pathogenic. In one of the male partners, a nonsense mutations c.832C>T was found, which was also known to be pathogenic. Another male partner was found to harbor a TYR gene mutation c.346C>T, which was also known to be a pathogenic nonsense mutation. The coding region of the TYR gene c.925_926insC (p.Thr309ThrfsX9) probably underlies the OCA1 disease phenotype.

  11. Genetic background affects pathogenicity island function and pathogen emergence in Streptomyces.

    Science.gov (United States)

    Zhang, Yucheng; Jiang, Guangde; Ding, Yousong; Loria, Rosemary

    2018-01-09

    With few exceptions, thaxtomin A (ThxA), a nitrated diketopiperazine, is the pathogenicity determinant for plant-pathogenic Streptomyces species. In Streptomyces scabiei (syn. S. scabies), the ThxA biosynthetic cluster is located within a 177-kb mobile pathogenicity island (PAI), called the toxicogenic region (TR). In S. turgidiscabies, the ThxA biosynthetic cluster is located within a 674-kb pathogenicity island (PAIst). The emergence of new plant pathogens occurs in this genus, but not frequently. This raises the question of whether the mobilization of these pathogenicity regions, through mating, is widespread and whether TR and PAIst can confer plant pathogenicity. We showed that ThxA biosynthetic clusters on TR and PAIst were transferred into strains from five non-pathogenic Streptomyces species through mating with S. scabiei and S. turgidiscabies. However, not all of the transconjugants produced ThxA and exhibited the virulence phenotype, indicating that the genetic background of the recipient strains affects the functionality of the ThxA biosynthetic cluster and therefore would be expected to affect the emergence of novel pathogenic Streptomyces species. Thxs have been patented as natural herbicides, but have yet to be commercialized. Our results also demonstrated the potential of the heterologous production of ThxA as a natural and biodegradable herbicide in non-pathogenic Streptomyces species. © 2018 BSPP AND JOHN WILEY & SONS LTD.

  12. A novel approach for differentiating pathogenic and non-pathogenic Leptospira based on molecular fingerprinting.

    Science.gov (United States)

    Xiao, Di; Zhang, Cuicai; Zhang, Huifang; Li, Xiuwen; Jiang, Xiugao; Zhang, Jianzhong

    2015-04-24

    Leptospirosis is a worldwide, deadly zoonotic disease. Pathogenic Leptospira causes leptospirosis. The rapid and accurate identification of pathogenic and non-pathogenic Leptospira strains is essential for appropriate therapeutic management and timely intervention for infection control. The molecular fingerprint is a simple and rapid alternative tool for microorganisms identification, which is based on matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). In this study, molecular fingerprint was performed to identify pathogenic strains of Leptospira. Phylogenetic analysis based on 16S rRNA gene sequences was used as the reference method. In addition, a label-free technique was used to reveal the different proteins of pathogenic or non-pathogenic Leptospira. A reference database was constructed using 30 Leptospira strains, including 16 pathogenic strains and 14 non-pathogenic strains. Two super reference spectra that were associated with pathogenicity were established. Overall, 33 Leptospira strains were used for validation, and 32 of 33 Leptospira strains could be identified on the species level and all the 33 could be classified as pathogenic or non-pathogenic. The super reference spectra and the major spectra projection (MSP) dendrogram correctly categorized the Leptospira strains into pathogenic and non-pathogenic groups, which was consistent with the 16S rRNA reference methods. Between the pathogenic and non-pathogenic strains, 108 proteins were differentially expressed. molecular fingerprint is an alternative to conventional molecular identification and can rapidly distinguish between pathogenic and non-pathogenic Leptospira strains. Therefore, molecular fingerprint may play an important role in the clinical diagnosis, treatment, surveillance, and tracking of epidemic outbreaks of leptospirosis. Leptospirosis is a worldwide zoonosis that is caused by spirochetes of the genus Leptospira. Leptospirosis is a serious zoonotic

  13. Novel detection techniques for human pathogens that contaminate poultry.

    Science.gov (United States)

    Mandrell, R E; Wachtel, M R

    1999-06-01

    Poultry products are presumed to be a major contributor to human foodborne illness due to their high frequency of contamination with pathogens Salmonella spp. and Campylobacter spp. This has stimulated the development of more sensitive and rapid methods for identifying pathogens present in poultry. These new methods include immunomagnetic separation of pathogen, PCR amplification of pathogen-specific sequences, pathogen-specific DNA and RNA probes, and identification of pathogen-specific ions by mass spectrometry.

  14. Moraxella catarrhalis: from emerging to established pathogen

    NARCIS (Netherlands)

    C.M. Verduin (Cees); C. Hol; A. Fleer; H. van Dijk (Hans); A.F. van Belkum (Alex)

    2002-01-01

    textabstractMoraxella catarrhalis (formerly known as Branhamella catarrhalis) has emerged as a significant bacterial pathogen of humans over the past two decades. During this period, microbiological and molecular diagnostic techniques have been developed and improved for M.

  15. The making of a new pathogen

    DEFF Research Database (Denmark)

    Stukenbrock, Eva; Bataillon, Thomas; Dutheil, Julien

    2011-01-01

    The fungus Mycosphaerella graminicola emerged as a new pathogen of cultivated wheat during its domestication ~11,000 yr ago. We assembled 12 high-quality full genome sequences to investigate the genetic footprints of selection in this wheat pathogen and closely related sister species that infect...... that gene-rich regions or regions with low recombination experience stronger effects of natural selection on neutral diversity. Emergence of a new agricultural host selected a highly specialized and fast-evolving pathogen with unique evolutionary patterns compared with its wild relatives. The strong impact....... Recent divergence between pathogen sister species is attested by the high degree of incomplete lineage sorting (ILS) in their genomes. We exploit ILS to generate a genetic map of the species without any crossing data, document recent times of species divergence relative to genome divergence, and show...

  16. Pathogen reduction in sludges by irradiation

    International Nuclear Information System (INIS)

    Brandon, J.R.

    1978-01-01

    This paper presents results of pathogen inactivation programs being conducted in Belgium, Czechoslovakia, France, East Germany, West Germany, Hungary, Italy, The Netherlands, Poland, Spain, Sweden, Switzerland, the United Kingdom, and the United States

  17. Genomes of foodborne and waterborne pathogens

    National Research Council Canada - National Science Library

    Fratamico, Pina M; Liu, Yanhong; Kathariou, Sophia

    2011-01-01

    ... of Pathogenic Vibrio cholerae * 85 Salvador Almagro-Moreno, Ronan A. Murphy, and E. Fidelma Boyd 8. Genomics of the Enteropathogenic Yersiniae * 101 Alan McNally, Nicholas R. Thomson, and Brendan W. ...

  18. Promotion and inhibition of mutation in pathogens

    Directory of Open Access Journals (Sweden)

    Maurice Samuel Devaraj

    2014-03-01

    Findings from this research may be used to prevent development of drug resistance, whether epigenetic or arising due to deoxyribonucleic acid (DNA modification, in several pathogens, especially Mycobacterium tuberculosis through the co-administration of adenosine along with antibiotic treatment.

  19. Modulation of pathogen recognition by autophagy

    Directory of Open Access Journals (Sweden)

    Ji Eun eOh

    2012-03-01

    Full Text Available Autophagy is an ancient biological process for maintaining cellular homeostasis by degradation of long-lived cytosolic proteins and organelles. Recent studies demonstrated that autophagy is availed by immune cells to regulate innate immunity. On the one hand, cells exert direct effector function by degrading intracellular pathogens; on the other hand, autophagy modulates pathogen recognition and downstream signaling for innate immune responses. Pathogen recognition via pattern recognition receptors induces autophagy. The function of phagocytic cells is enhanced by recruitment of autophagy-related proteins. Moreover, autophagy acts as a delivery system for viral replication complexes to migrate to the endosomal compartments where virus sensing occurs. In another case, key molecules of the autophagic pathway have been found to negatively regulate immune signaling, thus preventing aberrant activation of cytokine production and consequent immune responses. In this review, we focus on the recent advances in the role of autophagy in pathogen recognition and modulation of innate immune responses.

  20. Surveys for Pathogens of Monoecious Hydrilla 2014

    Science.gov (United States)

    2016-06-01

    monoecious hydrilla management. Fusarium spp.: The genus Fusarium is represented with many necrotrophic plant pathogenic fungi causing disease on...Press Inc.: Boca Raton, FL. Dick, G. O., L. L. Dodd, D. H. Smith, and M. Smart. (In Review ). Native aquatic plant restoration as a component of...74:1035-1036. Joye, G. F., and A. F. Cofrancesco. 1991. Studies on the use of fungal plant pathogens for control of Hydrilla verticillata (L. f

  1. Pathogen Causing Disease of Diagnosis PCR Tecnology

    OpenAIRE

    SEVİNDİK, Emre; KIR, A. Çağrı; BAŞKEMER, Kadir; UZUN, Veysel

    2013-01-01

    Polimerase chain reaction (PCR) with which, the development of recombinant DNA tecnology, a technique commonly used in field of moleculer biology and genetic. Duplication of the target DNA is provided with this technique without the need for cloning. Some fungus species, bacteria, viruses constitutent an important group of pathogenicity in human, animals and plants. There are routinely applied types of PCR in the detection of pathogens infections diseases. These Nested- PCR, Real- Time PCR, M...

  2. Human diseases associated with fish pathogens

    Directory of Open Access Journals (Sweden)

    VATSOS N. Ioannis

    2011-09-01

    Full Text Available Until recently, most cases of humans been affected by fish pathogens, bacterial and parasitic, were limited in certain countries, either due to the inappropriate sanitary measures used in those areas, or due to the local habit of eating raw or undercooked fish. However, as new reliable methods to identify fish pathogens in samples collected from sick humans have been developed, the confirmed cases worldwide have increased. The most common fish bacterial pathogens that can affect humans belong to the genera: Mycobacterium spp. (mainly M. marinum, M. chelonei, M. fortuitum, Nocardia spp., Streptococcus spp (S. iniae, Vibrio spp. (mainly V. vulnificus, V. alginolyticus and V. parahaemolyticus and Aeromonas spp. (mainly A. hydrophila and rarely A. sorbia and A. caviae. Less often, infections of humans with Edwardsiella tarda and Photobacterium damselae sbsp. damselae have been reported. Fish usually act as intermediate hosts to many important parasites of human, as for example the tapeworm Diphyllobothrium latum. To fish, these parasites cause no or little damage, as they are usually found encysted in many fish tissues. Of particular interest are someanisakids (e.g. Anisakis simplex and Pseudoterranova decipiens which can produce some thermostable allergens. Most of the above pathogens can infect humans through skin wounds or after ingesting infected fish. Compromised immune system of the infected humans may result in extensive spread of the pathogens within the body, often causing death.There are no fish viruses or fungi that can affect humans. Fish can also act as carriers for human pathogens, such as Salmonella spp., Escherichia coli and Listeria spp. Recently, few human pathogens have also been isolated from the internal organs of fish, as for example Brucella melitensis. The effects of these human pathogens to fish are still not known.

  3. Aggregatibacter actinomycetemcomitans: Important pathogen in periodontitis

    OpenAIRE

    Ramos Perfecto, Donald; Profesor Auxiliar, Dpto de C. Básicas. Laboratorio de Microbiología UNMSM.; Moromi Nakata, Hilda; Profesor Principal Dpto. de C. Básicas. Laboratorio de Microbiología UNMSM.; Martínez Cadillo, Elba; Profesor Asociado Dpto. de C. Básicas. Laboratorio de Microbiología UNMSM.; Mendoza Rojas, Alejandro; Profesor Principal Dpto. de C. Básicas. Laboratorio de Microbiología UNMSM.

    2014-01-01

    Aggregatibacter actinomycetemcomitans is a pathogen extensively studied in the clinical conditions of the Periodontitis, already identified in the early twentieth century. Over the years it has undergone changes in its denomination and multiple virulence factors that make it an important pathogen in the periodontal disease have been discovered, specifically in the localized Aggressive Periodontitis. This review tries to explain its morphology, virulence factors, culture and other important ch...

  4. Subversion of cell signaling by pathogens.

    Science.gov (United States)

    Alto, Neal M; Orth, Kim

    2012-09-01

    Pathogens exploit several eukaryotic signaling pathways during an infection. They have evolved specific effectors and toxins to hijack host cell machinery for their own benefit. Signaling molecules are preferentially targeted by pathogens because they globally regulate many cellular processes. Both viruses and bacteria manipulate and control pathways that regulate host cell survival and shape, including MAPK signaling, G-protein signaling, signals controlling cytoskeletal dynamics, and innate immune responses.

  5. Sexual Reproduction of Human Fungal Pathogens

    Science.gov (United States)

    Heitman, Joseph; Carter, Dee A.; Dyer, Paul S.; Soll, David R.

    2014-01-01

    We review here recent advances in our understanding of sexual reproduction in fungal pathogens that commonly infect humans, including Candida albicans, Cryptococcus neoformans/gattii, and Aspergillus fumigatus. Where appropriate or relevant, we introduce findings on other species associated with human infections. In particular, we focus on rapid advances involving genetic, genomic, and population genetic approaches that have reshaped our view of how fungal pathogens evolve. Rather than being asexual, mitotic, and largely clonal, as was thought to be prevalent as recently as a decade ago, we now appreciate that the vast majority of pathogenic fungi have retained extant sexual, or parasexual, cycles. In some examples, sexual and parasexual unions of pathogenic fungi involve closely related individuals, generating diversity in the population but with more restricted recombination than expected from fertile, sexual, outcrossing and recombining populations. In other cases, species and isolates participate in global outcrossing populations with the capacity for considerable levels of gene flow. These findings illustrate general principles of eukaryotic pathogen emergence with relevance for other fungi, parasitic eukaryotic pathogens, and both unicellular and multicellular eukaryotic organisms. PMID:25085958

  6. Regulatory T cells and immunity to pathogens.

    Science.gov (United States)

    Rouse, Barry T; Suvas, Susmit

    2007-09-01

    Immune responses to pathogens are modulated by one or more types of cells that perform a regulatory function. Some cells with this function, such as CD4+ Foxp3+ natural regulatory T cells (nTreg), pre-exist prior to infections whereas others may be induced as a consequence of infection (adaptive Treg). With pathogens that have a complex pathogenesis, multiple types of regulatory cells could influence the outcome. One major property of Treg is to help minimize collateral tissue damage that can occur during immune reactions to a chronic infection. The consequence is less damage to the host but in such situations the pathogen is likely to establish persistence. In some cases, a fine balance is established between Treg responses, effector components of immunity and the pathogen. Treg responses to pathogens may also act to hamper the efficacy of immune control. This review discusses these issues as well as the likely mechanisms by which various pathogens can signal the participation of Treg during infection.

  7. Adenoid Reservoir for Pathogenic Biofilm Bacteria▿

    Science.gov (United States)

    Nistico, L.; Kreft, R.; Gieseke, A.; Coticchia, J. M.; Burrows, A.; Khampang, P.; Liu, Y.; Kerschner, J. E.; Post, J. C.; Lonergan, S.; Sampath, R.; Hu, F. Z.; Ehrlich, G. D.; Stoodley, P.; Hall-Stoodley, L.

    2011-01-01

    Biofilms of pathogenic bacteria are present on the middle ear mucosa of children with chronic otitis media (COM) and may contribute to the persistence of pathogens and the recalcitrance of COM to antibiotic treatment. Controlled studies indicate that adenoidectomy is effective in the treatment of COM, suggesting that the adenoids may act as a reservoir for COM pathogens. To investigate the bacterial community in the adenoid, samples were obtained from 35 children undergoing adenoidectomy for chronic OM or obstructive sleep apnea. We used a novel, culture-independent molecular diagnostic methodology, followed by confocal microscopy, to investigate the in situ distribution and organization of pathogens in the adenoids to determine whether pathogenic bacteria exhibited criteria characteristic of biofilms. The Ibis T5000 Universal Biosensor System was used to interrogate the extent of the microbial diversity within adenoid biopsy specimens. Using a suite of 16 broad-range bacterial primers, we demonstrated that adenoids from both diagnostic groups were colonized with polymicrobial biofilms. Haemophilus influenzae was present in more adenoids from the COM group (P = 0.005), but there was no significant difference between the two patient groups for Streptococcus pneumoniae or Staphylococcus aureus. Fluorescence in situ hybridization, lectin binding, and the use of antibodies specific for host epithelial cells demonstrated that pathogens were aggregated, surrounded by a carbohydrate matrix, and localized on and within the epithelial cell surface, which is consistent with criteria for bacterial biofilms. PMID:21307211

  8. Risk factors for drug-resistant pathogens in immunocompetent patients with pneumonia: Evaluation of PES pathogens.

    Science.gov (United States)

    Ishida, Tadashi; Ito, Akihiro; Washio, Yasuyoshi; Yamazaki, Akio; Noyama, Maki; Tokioka, Fumiaki; Arita, Machiko

    2017-01-01

    The new acronym, PES pathogens (Pseudomonas aeruginosa, Enterobacteriaceae extended-spectrum beta-lactamase-positive, and methicillin-resistant Staphylococcus aureus), was recently proposed to identify drug-resistant pathogens associated with community-acquired pneumonia. To evaluate the risk factors for antimicrobial-resistant pathogens in immunocompetent patients with pneumonia and to validate the role of PES pathogens. A retrospective analysis of a prospective observational study of immunocompetent patients with pneumonia between March 2009 and June 2015 was conducted. We clarified the risk factors for PES pathogens. Of the total 1559 patients, an etiological diagnosis was made in 705 (45.2%) patients. PES pathogens were identified in 51 (7.2%) patients, with 53 PES pathogens (P. aeruginosa, 34; ESBL-positive Enterobacteriaceae, 6; and MRSA, 13). Patients with PES pathogens had tendencies toward initial treatment failure, readmission within 30 days, and a prolonged hospital stay. Using multivariate analysis, female sex (adjusted odds ratio [AOR] 1.998, 95% confidence interval [CI] 1.047-3.810), admission within 90 days (AOR 2.827, 95% CI 1.250-6.397), poor performance status (AOR 2.380, 95% CI 1.047-5.413), and enteral feeding (AOR 5.808, 95% CI 1.813-18.613) were independent risk factors for infection with PES pathogens. The area under the receiver operating characteristics curve for the risk factors was 0.66 (95% CI 0.577-0.744). We believe the definition of PES pathogens is an appropriate description of drug-resistant pathogens associated with pneumonia in immunocompetent patients. The frequency of PES pathogens is quite low. However, recognition is critical because they can cause refractory pneumonia and different antimicrobial treatment is required. Copyright © 2016 The Author(s). Published by Elsevier Ltd.. All rights reserved.

  9. More Pathogenicity or Just More Pathogens?—On the Interpretation Problem of Multiple Pathogen Detections with Diagnostic Multiplex Assays

    Directory of Open Access Journals (Sweden)

    Andreas E. Zautner

    2017-06-01

    Full Text Available Modern molecular diagnostic approaches in the diagnostic microbiological laboratory like real-time quantitative polymerase chain reaction (qPCR have led to a considerable increase of diagnostic sensitivity. They usually outperform the diagnostic sensitivity of culture-based approaches. Culture-based diagnostics were found to be insufficiently sensitive for the assessment of the composition of biofilms in chronic wounds and poorly standardized for screenings for enteric colonization with multi-drug resistant bacteria. However, the increased sensitivity of qPCR causes interpretative challenges regarding the attribution of etiological relevance to individual pathogen species in case of multiple detections of facultative pathogenic microorganisms in primarily non-sterile sample materials. This is particularly the case in high-endemicity settings, where continuous exposition to respective microorganisms leads to immunological adaptation and semi-resistance while considerable disease would result in case of exposition of a non-adapted population. While biofilms in chronic wounds show higher pathogenic potential in case of multi-species composition, detection of multiple pathogens in respiratory samples is much more difficult to interpret and asymptomatic enteric colonization with facultative pathogenic microorganisms is frequently observed in high endemicity settings. For respiratory samples and stool samples, cycle-threshold-value-based semi-quantitative interpretation of qPCR results has been suggested. Etiological relevance is assumed if cycle-threshold values are low, suggesting high pathogen loads. Although the procedure is challenged by lacking standardization and methodical issues, first evaluations have led to promising results. Future studies should aim at generally acceptable quantitative cut-off values to allow discrimination of asymptomatic colonization from clinically relevant infection.

  10. Pathogenicity island mobility and gene content.

    Energy Technology Data Exchange (ETDEWEB)

    Williams, Kelly Porter

    2013-10-01

    Key goals towards national biosecurity include methods for analyzing pathogens, predicting their emergence, and developing countermeasures. These goals are served by studying bacterial genes that promote pathogenicity and the pathogenicity islands that mobilize them. Cyberinfrastructure promoting an island database advances this field and enables deeper bioinformatic analysis that may identify novel pathogenicity genes. New automated methods and rich visualizations were developed for identifying pathogenicity islands, based on the principle that islands occur sporadically among closely related strains. The chromosomally-ordered pan-genome organizes all genes from a clade of strains; gaps in this visualization indicate islands, and decorations of the gene matrix facilitate exploration of island gene functions. A %E2%80%9Clearned phyloblocks%E2%80%9D method was developed for automated island identification, that trains on the phylogenetic patterns of islands identified by other methods. Learned phyloblocks better defined termini of previously identified islands in multidrug-resistant Klebsiella pneumoniae ATCC BAA-2146, and found its only antibiotic resistance island.

  11. Susceptibility of pathogenic and nonpathogenic Naegleria ssp

    Energy Technology Data Exchange (ETDEWEB)

    Whiteman, L.Y.

    1988-01-01

    The susceptibility of four species of Naegleria amoebae to complement-mediated lysis was determined. The amoebicidal activity of normal human serum (NHS) and normal guinea pig serum (NGPS) for Naegleria amoebae was measured by an in vitro cytotoxicity assay. Release of radioactivity from amoebae labeled with {sup 3}H-uridine and visual observation with a compound microscope were used as indices of lysis. Susceptibility or resistance to complement-mediated lysis in vitro correlated with the in vivo pathogenic potential. Nonpathogenic Naegleria amoebae were lysed at a faster rate and at higher cell concentrations than were pathogenic amoebae. Electrophoretic analysis of NHS incubated with pathogenic or nonpathogenic Naegleria spp. demonstrated that amoebae activate the complement cascade resulting in the production of C3 and C5 complement cleavage products. Treatment with papain or trypsin for 1 h, but not with sialidase, increase the susceptibility of highly pathogenic, mouse-passaged N. fowleri to lysis. Treatment with actinomycin D, cycloheximide or various protease inhibitors for 4 h did not increase susceptibility to lysis. Neither a repair process involving de novo protein synthesis nor a complement-inactivating protease appear to account for the increase resistance of N. fowleri amoebae to complement-mediated lysis. A binding study with {sup 125}I radiolabeled C9 indicated that the terminal complement component does not remain stably bound to the membrane of pathogenic amoebae.

  12. Stomata and pathogens: Warfare at the gates.

    Science.gov (United States)

    Gudesblat, Gustavo E; Torres, Pablo S; Vojnov, Adrian A

    2009-12-01

    Bacteria and fungi are capable of triggering stomatal closure through pathogen-associated molecular patterns (PAMPs), which prevents penetration through these pores. Therefore, the stomata can be considered part of the plant innate immune response. Some pathogens have evolved mechanisms to evade stomatal defense. The bacterial pathogen Xanthomonas campestris pv. campestris (Xcc), which infects plants of the Brassicaceae family mainly through hydathodes, has also been reported to infect plants through stomata. A recent report shows that penetration of Xcc in Arabidopsis leaves through stomata depends on a secreted small molecule whose synthesis is under control of the rpf/diffusible signal factor (DSF) cell-to-cell signaling system, which also controls genes involved in biofilm formation and pathogenesis. The same reports shows that Arabidopsis ROS- and PAMP-activated MAP kinase 3 (MPK3) is essential for stomatal innate response. Other recent and past findings about modulation of stomatal behaviour by pathogens are also discussed. In all, these findings support the idea that PAMP-triggered stomatal closure might be a more effective and widespread barrier against phytopathogens than previously thought, which has in turn led to the evolution in pathogens of several mechanisms to evade stomatal defense.

  13. Regulatory Proteolysis in Arabidopsis-Pathogen Interactions.

    Science.gov (United States)

    Pogány, Miklós; Dankó, Tamás; Kámán-Tóth, Evelin; Schwarczinger, Ildikó; Bozsó, Zoltán

    2015-09-24

    Approximately two and a half percent of protein coding genes in Arabidopsis encode enzymes with known or putative proteolytic activity. Proteases possess not only common housekeeping functions by recycling nonfunctional proteins. By irreversibly cleaving other proteins, they regulate crucial developmental processes and control responses to environmental changes. Regulatory proteolysis is also indispensable in interactions between plants and their microbial pathogens. Proteolytic cleavage is simultaneously used both by plant cells, to recognize and inactivate invading pathogens, and by microbes, to overcome the immune system of the plant and successfully colonize host cells. In this review, we present available results on the group of proteases in the model plant Arabidopsis thaliana whose functions in microbial pathogenesis were confirmed. Pathogen-derived proteolytic factors are also discussed when they are involved in the cleavage of host metabolites. Considering the wealth of review papers available in the field of the ubiquitin-26S proteasome system results on the ubiquitin cascade are not presented. Arabidopsis and its pathogens are conferred with abundant sets of proteases. This review compiles a list of those that are apparently involved in an interaction between the plant and its pathogens, also presenting their molecular partners when available.

  14. Human pathogen subversion of antigen presentation.

    Science.gov (United States)

    Brodsky, F M; Lem, L; Solache, A; Bennett, E M

    1999-04-01

    Many pathogens have co-evolved with their human hosts to develop strategies for immune evasion that involve disruption of the intracellular pathways by which antigens are bound by class I and class II molecules of the major histocompatibility complex (MHC) for presentation to T cells. Here the molecular events in these pathways are reviewed and pathogen interference is documented for viruses, extracellular and intracellular bacteria and intracellular parasites. In addition to a general review, data from our studies of adenovirus, Chlamydia trachomatis and Coxiella burnetii are summarized. Adenovirus E19 is the first viral gene product described that affects class I MHC molecule expression by two separate mechanisms, intracellular retention of the class I heavy chain by direct binding and by binding to the TAP transporter involved in class I peptide loading. Coxiella and Chlamydia both affect peptide presentation by class II MHC molecules as a result of their residence in endocytic compartments, although the properties of the parasitophorous vacuoles they form are quite different. These examples of active interference with antigen presentation by viral gene products and passive interference by rickettsiae and bacteria are typical of the strategies used by these different classes of pathogens, which need to evade different types of immune responses. Pathogen-host co-evolution is evident in these subversion tactics for which the pathogen crime seems tailored to fit the immune system punishment.

  15. Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen.

    Directory of Open Access Journals (Sweden)

    David E L Cooke

    Full Text Available Pest and pathogen losses jeopardise global food security and ever since the 19(th century Irish famine, potato late blight has exemplified this threat. The causal oomycete pathogen, Phytophthora infestans, undergoes major population shifts in agricultural systems via the successive emergence and migration of asexual lineages. The phenotypic and genotypic bases of these selective sweeps are largely unknown but management strategies need to adapt to reflect the changing pathogen population. Here, we used molecular markers to document the emergence of a lineage, termed 13_A2, in the European P. infestans population, and its rapid displacement of other lineages to exceed 75% of the pathogen population across Great Britain in less than three years. We show that isolates of the 13_A2 lineage are among the most aggressive on cultivated potatoes, outcompete other aggressive lineages in the field, and overcome previously effective forms of plant host resistance. Genome analyses of a 13_A2 isolate revealed extensive genetic and expression polymorphisms particularly in effector genes. Copy number variations, gene gains and losses, amino-acid replacements and changes in expression patterns of disease effector genes within the 13_A2 isolate likely contribute to enhanced virulence and aggressiveness to drive this population displacement. Importantly, 13_A2 isolates carry intact and in planta induced Avrblb1, Avrblb2 and Avrvnt1 effector genes that trigger resistance in potato lines carrying the corresponding R immune receptor genes Rpi-blb1, Rpi-blb2, and Rpi-vnt1.1. These findings point towards a strategy for deploying genetic resistance to mitigate the impact of the 13_A2 lineage and illustrate how pathogen population monitoring, combined with genome analysis, informs the management of devastating disease epidemics.

  16. Priority setting of foodborne pathogens: disease burden and costs of selected enteric pathogens

    NARCIS (Netherlands)

    Kemmeren JM; Mangen MJJ; Duynhoven YTHP van; Havelaar AH; MGB

    2006-01-01

    Toxoplasmosis causes the highest disease burden among seven evaluated foodborne pathogens. This is the preliminary conclusion of a major study of the disease burden and related costs of foodborne pathogens. The other micro-organisms that were studied are Campylobacter spp., Salmonella spp.,

  17. Immune Evasion Strategies of Pathogens in Macrophages: the Potential for Limiting Pathogen Transmission.

    Science.gov (United States)

    Ren, Yuwei; Khan, Faheem Ahmed; Pandupuspitasari, Nuruliarizki Shinta; Zhang, Shujun

    2017-01-01

    Preventing pathogen transmission to a new host is of major interest to the immunologist and could benefit from a detailed investigation of pathogen immune evasion strategies. The first line of defense against pathogen invasion is provided by macrophages. When they sense pathogens, macrophages initiate signals to inflammatory and pro-inflammatory cytokines through pattern recognition receptors (PRRs) subsequently mediating phagocytosis and inflammation. The macrophage immune machinery classically includes two subsets: the activated M1 and the activated M2 that respond accordingly in diverse immune challenges. The lipid and glycogen metabolic pathways work together with the lysosome to help the mature phagosome to degrade and eliminate intracellular pathogens in macrophages. The viral evasion strategies are even more complex due to the interplay between autophagy and apoptosis. However, pathogens evolve several strategies to camouflage themselves against immune responses in order to ensure their survival, replication and transmission. These strategies include the muting of PRRs initiated inflammatory responses, attenuation of M1 and/or induction of M2 macrophages, suppression of autophago-lysosomal formation, interference with lipid and glycogen metabolism, and viral mediation of autophagy and apoptosis cross-talk to enhance viral replication. This review focuses on pathogen immune evasion methods and on the strategies used by the host against camouflaged pathogens.

  18. Molecular mechanisms of pathogenicity: how do pathogenic microorganisms develop cross-kingdom host jumps?

    NARCIS (Netherlands)

    Baarlen, P. van; Belkum, A. van; Summerbell, R.C.; Crous, P.W.; Thomma, B.P.

    2007-01-01

    It is common knowledge that pathogenic viruses can change hosts, with avian influenza, the HIV, and the causal agent of variant Creutzfeldt-Jacob encephalitis as well-known examples. Less well known, however, is that host jumps also occur with more complex pathogenic microorganisms such as bacteria

  19. Methods for detecting pathogens in the beef food chain: detecting particular pathogens

    Science.gov (United States)

    The main food-borne pathogens of concern in the beef food chain are Shiga toxin-producing Escherichia coli (STEC) and Salmonella spp.; however, the presence of other pathogens, including Listeria monocytogenes, Campylobacter spp., Clostridium spp., Bacillus cereus, and Mycobacterium avium subsp. par...

  20. Advancing waterborne pathogen modelling: lessons from global nutrient export models

    NARCIS (Netherlands)

    Vermeulen, L.C.; Hofstra, N.; Kroeze, C.; Medema, G.J.

    2015-01-01

    Waterborne pathogens cause health problems worldwide. A global waterborne pathogen model could provide valuable new insights for data-sparse regions, by identifying pathogen hotspots and evaluating global change and risk management scenarios. Global waterborne pathogen modelling is not as advanced

  1. Cytosolic phospholipase A2 as a mediator of disease pathogenesis.

    Science.gov (United States)

    Linkous, Amanda; Yazlovitskaya, Eugenia

    2010-10-01

    As efficient catalysts, enzymes help maintain a variety of biological and chemical transformations necessary for cellular metabolism and normal physiology. Unfortunately, pathogenic microbes can also exploit enzymatic reactions in an attempt to spread infection. Cytosolic phospholipase A2 (cPLA(2) ) is an enzyme that is responsible for the hydrolysis of membrane phospholipids such as phosphatidylcholine. Following activation, cPLA(2) cleaves phosphatidylcholine to yield free fatty acid and lysophosphatidylcholine. Both of these products and their downstream metabolites initiate a network of signalling cascades that influence cellular viability and inflammation. Recent observations have shown that viral and bacterial agents often target this intricate organization of signalling molecules. This review briefly discusses the role of cPLA(2) in the biological response to disease-causing pathogens and injury, the immunological process and tumour progression. © 2010 Blackwell Publishing Ltd.

  2. Bacterial pathogens in rainbow trout, Oncorhynchus mykiss (Walbaum), reared at Danish freshwater farms

    DEFF Research Database (Denmark)

    Dalsgaard, Inger; Madsen, Lone

    2000-01-01

    During a 2-year period, bacterial fish pathogens were monitored on five rainbow trout, Oncorhynchus mykirs (Walbaum), freshwater farms in Denmark. A total of 1206 fish were examined and 361 bacterial isolates were identified phenotypically. Enteric redmouth disease, furunculosis and rainbow trout...

  3. Adenylate cyclases involvement in pathogenicity, a minireview.

    Science.gov (United States)

    Costache, Adriana; Bucurenci, Nadia; Onu, Adrian

    2013-01-01

    Cyclic AMP (cAMP), one of the most important secondary messengers, is produced by adenylate cyclase (AC) from adenosine triphosphate (ATP). AC is a widespread enzyme, being present both in prokaryotes and eukaryotes. Although they have the same enzymatic activity (ATP cyclization), the structure of these proteins varies, depending on their function and the producing organism. Some pathogenic bacteria utilize these enzymes as toxins which interact with calmodulin (or another eukaryote activator), causing intense cAMP synthesis and disruption of infected cell functions. In contrast, other pathogenic bacteria benefit of augmentation of AC activity for their own function. Based on sequence analysis ofAC catalytic domain from two pathogenic bacteria (Bacillus anthracis and Bordetellapertussis) with known three-dimensional structures, a possible secondary structure for 1-255 amino acid fragment from Pseudomonas aeruginosa AC (with 80TKGFSVKGKSS90 as the ATP binding site) is proposed.

  4. Molecular techniques for characterisation of pathogens

    DEFF Research Database (Denmark)

    Kampmann, Marie-Louise

    Pathogens have always had a major interest to humans due to their central role in sickness and death. Influenza A annually kills at least 250,000 humans, and has been the cause of millions of further deaths during pandemic years in the past. Plague (Yersinia pestis) has been the cause of the Black...... Death that was leading to the desertion of whole cities, and as a result was for centuries one of the most feared events in human life. For both of these organisms we generally have situations with only very small amounts of pathogen nucleic acids available, usually because many interesting samples...... capture for the detection of Y. pestis in samples from the Justinian plague (600 AD) as an attempt to detect this pathogen as a cause of death in the victims....

  5. Biocontrol of Pathogens in the Meat Chain

    Science.gov (United States)

    Burgess, Catherine M.; Rivas, Lucia; McDonnell, Mary J.; Duffy, Geraldine

    Bacterial foodborne zoonotic diseases are of major concern, impacting public health and causing economic losses for the agricultural-food sector and the wider society. In the United States (US) alone foodborne illness from pathogens is responsible for 76 million cases of illnesses each year (Mead et al., 1999). Salmonella, Campylobacter jejuni and Enterohaemorraghic Escherichia coli (EHEC; predominately serotype O157:H7) and Listeria monocytogenes are the most predominant foodborne bacterial pathogens reported in the developed world (United States Department of Agriculture, 2001). The importance of meat and meat products as a vehicle of foodborne zoonotic pathogens cannot be underestimated (Center for Disease Control, 2006; Gillespie, O’Brien, Adak, Cheasty, & Willshaw, 2005; Mazick, Ethelberg, Nielsen, Molbak, & Lisby, 2006; Mead et al., 2006).

  6. Expression Study of Banana Pathogenic Resistance Genes

    Directory of Open Access Journals (Sweden)

    Fenny M. Dwivany

    2016-10-01

    Full Text Available Banana is one of the world's most important trade commodities. However, infection of banana pathogenic fungi (Fusarium oxysporum race 4 is one of the major causes of decreasing production in Indonesia. Genetic engineering has become an alternative way to control this problem by isolating genes that involved in plant defense mechanism against pathogens. Two of the important genes are API5 and ChiI1, each gene encodes apoptosis inhibitory protein and chitinase enzymes. The purpose of this study was to study the expression of API5 and ChiI1 genes as candidate pathogenic resistance genes. The amplified fragments were then cloned, sequenced, and confirmed with in silico studies. Based on sequence analysis, it is showed that partial API5 gene has putative transactivation domain and ChiI1 has 9 chitinase family GH19 protein motifs. Data obtained from this study will contribute in banana genetic improvement.

  7. [RAPD analysis of plant pathogenic coryneform bacteria].

    Science.gov (United States)

    Yin, Yan-Ni; Chen, Yong-Fang; Li, Shi-Mo; Guo, Jian-Hua

    2005-12-01

    RAPD analysis was used for the taxonomy of plant pathogenic coryneform bacteria, especially for the classification of two new pathogens (Curtobacterium flaccumfaciens pv. basellae pv. nov. and Curtobacterium flaccumfaciens pv. beticola pv. nov.). 20 random primers were screened from 50 ones to detect polymorphism among the total strains used. 80.4% were polymorphic bands among the 225 ones produced. The results of pairwise similarity and UPGMA cluster analysis suggest that the two new pathovars of sugar beet (Beta vulgaris var. saccharifera) and malabar spinach (Basella rubra) are genetically close related with Curtobacterium flacumfaciens, and the minimal similarity coefficient is 0.6511. According to the RAPD analysis and previous research, some newly made taxonomic changes of the plant pathogenic coryneform bacteria are discussed.

  8. Photoinactivation of major bacterial pathogens in aquaculture

    Directory of Open Access Journals (Sweden)

    Heyong Jin Roh

    2016-08-01

    Full Text Available Abstract Background Significant increases in the bacterial resistance to various antibiotics have been found in fish farms. Non-antibiotic therapies for infectious diseases in aquaculture are needed. In recent years, light-emitting diode technology has been applied to the inactivation of pathogens, especially those affecting humans. The purpose of this study was to assess the effect of blue light (wavelengths 405 and 465 nm on seven major bacterial pathogens that affect fish and shellfish important in aquaculture. Results We successfully demonstrate inactivation activity of a 405/465-nm LED on selected bacterial pathogens. Although some bacteria were not fully inactivated by the 465-nm light, the 405-nm light had a bactericidal effect against all seven pathogens, indicating that blue light can be effective without the addition of a photosensitizer. Photobacterium damselae, Vibrio anguillarum, and Edwardsiella tarda were the most susceptible to the 405-nm light (36.1, 41.2, and 68.4 J cm−2, respectively, produced one log reduction in the bacterial populations, whereas Streptococcus parauberis was the least susceptible (153.8 J cm−2 per one log reduction. In general, optical density (OD values indicated that higher bacterial densities were associated with lower inactivating efficacy, with the exception of P. damselae and Vibrio harveyi. In conclusion, growth of the bacterial fish and shellfish pathogens evaluated in this study was inactivated by exposure to either the 405- or 465-nm light. In addition, inactivation was dependent on exposure time. Conclusions This study presents that blue LED has potentially alternative therapy for treating fish and shellfish bacterial pathogens. It has great advantages in aspect of eco-friendly treating methods differed from antimicrobial methods.

  9. Adhesive threads of extraintestinal pathogenic Escherichia coli

    Directory of Open Access Journals (Sweden)

    Antão Esther-Maria

    2009-12-01

    Full Text Available Abstract The ability to adhere to host surfaces is by far the most vital step in the successful colonization by microbial pathogens. Colonization begins with the attachment of the bacterium to receptors expressed by cells forming the lining of the mucosa. Long hair like extracellular appendages called fimbriae, produced by most Gram-negative pathogens, mediate specific attachment to the epithelial cell surface. Associated with the fimbriae is a protein called an adhesin, which directs high-affinity binding to specific cell surface components. In the last couple of years, an enormous amount of research has been undertaken that deals with understanding how bacterial pathogens adhere to host cells. E. coli in all probability is one of the best studied free-living organisms. A group of E. coli called Extraintestinal pathogenic E. coli (ExPEC including both human and animal pathogens like Uropathogenic E. coli (UPEC, Newborn meningitic E. coli (NMEC and Avian pathogenic E. coli (APEC, have been found to harbour many fimbriae including Type 1 fimbriae, P fimbriae, curli fibres, S fimbriae, F1C fimbriae, Dr fimbriae, afimbrial adhesins, temperature-sensitive haemagglutinin and many novel adhesin gene clusters that have not yet been characterized. Each of these adhesins is unique due to the recognition of an adhesin-specific receptor, though as a group these adhesins share common genomic organization. A newly identified putative adhesin temporarily termed ExPEC Adhesin I, encoded by gene yqi, has been recently found to play a significant role in the pathogenesis of APEC infection, thus making it an interesting candidate for future research. The aim of this review is to describe the role of ExPEC adhesins during extraintestinal infections known till date, and to suggest the idea of investigating their potential role in the colonization of the host gut which is said to be a reservoir for ExPEC.

  10. Differentiation between a pathogenic and a non-pathogenic form of Gyrodactylus salaris using PCR-RFLP

    DEFF Research Database (Denmark)

    Kania, Per Walther; Jørgensen, Thomas Rohde; Buchmann, Kurt

    2007-01-01

    A new method based on PCR-RFLP is presented. It is able to differentiate between the Danish non-pathogenic form of Gyrodactylus salaris and the Norwegian pathogenic form.......A new method based on PCR-RFLP is presented. It is able to differentiate between the Danish non-pathogenic form of Gyrodactylus salaris and the Norwegian pathogenic form....

  11. Emerging pathogens: Dynamics, mutation and drug resistance

    Energy Technology Data Exchange (ETDEWEB)

    Perelson, A.S.; Goldstein, B.; Korber, B.T. [and others

    1997-10-01

    This is the final report of a one-year, Laboratory Directed Research and Development (LDRD) project at Los Alamos National Laboratory (LANL). The objectives of this project were to develop models of the spread of pathogens, such as HIV-1 and influenza, in humans, and then to use the models to address the possibility of designing appropriate drug therapies that may limit the ability of the pathogen to escape treatment by mutating into a drug resistant form. We have developed a model of drug-resistance to amantidine and rimantadine, the two major antiviral drugs used to treat influenza, and have used the model to suggest treatment strategies during an epidemic.

  12. Molecular techniques for characterisation of pathogens

    DEFF Research Database (Denmark)

    Kampmann, Marie-Louise

    Pathogens have always had a major interest to humans due to their central role in sickness and death. Influenza A annually kills at least 250,000 humans, and has been the cause of millions of further deaths during pandemic years in the past. Plague (Yersinia pestis) has been the cause of the Black...... capture for the detection of Y. pestis in samples from the Justinian plague (600 AD) as an attempt to detect this pathogen as a cause of death in the victims....

  13. Pathogenic Mechanisms of Cryptosporidium and Giardia.

    Science.gov (United States)

    Certad, Gabriela; Viscogliosi, Eric; Chabé, Magali; Cacciò, Simone M

    2017-07-01

    Intestinal protozoa are important etiological agents of diarrhea, particularly in children, yet the public health risk they pose is often neglected. Results from the Global Enteric Multicenter Study (GEMS) showed that Cryptosporidium is among the leading causes of moderate to severe diarrhea in children under 2 years. Likewise, Giardia infects approximately 200 million individuals worldwide, and causes acute diarrhea in children under 5 years. Despite this recognized role as pathogens, the question is why and how these parasites cause disease in some individuals but not in others. This review focuses on known pathogenic mechanisms of Cryptosporidium and Giardia, and infection progress towards disease. Copyright © 2017 Elsevier Ltd. All rights reserved.

  14. Viruses - from pathogens to vaccine carriers.

    Science.gov (United States)

    Small, Juliana C; Ertl, Hildegund C J

    2011-10-01

    Vaccination is mankind's greatest public health success story. By now vaccines to many of the viruses that once caused fatal childhood diseases are routinely used throughout the world. Traditional methods of vaccine development through inactivation or attenuation of viruses have failed for some of the most deadly human pathogens, necessitating new approaches. Genetic modification of viruses not only allows for their attenuation but also for incorporation of sequences from other viruses, turning one pathogen into a vaccine carrier for another. Recombinant viruses have pros and cons as vaccine carriers, as discussed below using vectors based on adenovirus, herpesvirus, flavivirus, and rhabdovirus as examples.

  15. Annexin A2 and cancer

    DEFF Research Database (Denmark)

    Christensen, Maria V; Høgdall, Claus K; Jochumsen, Kirsten M

    2018-01-01

    Annexin A2 is a 36-kDa protein interfering with multiple cellular processes especially in cancer progression. The present review aimed to show the relations between Annexin A2 and cancer. A systematic search for studies investigating cancer and Annexin A2 expression was conducted using Pub......Med. Acute lymphoblastic leukaemia, acute promyelocytic leukaemia, clear cell renal cell carcinoma, breast, cervical, colorectal, endometrial, gastric cancer, glioblastoma, hepatocellular carcinoma, lung, multiple myeloma, oesophageal squamous cell carcinoma, ovarian cancer, pancreatic duct adenocarcinoma......, prostate cancer and urothelial carcinoma were evaluated. Annexin A2 expression correlates with resistance to treatment, binding to the bone marrow, histological grade and type, TNM-stage and shortened overall survival. The regulation of Annexin A2 is of interest due to its potential as target for a more...

  16. Plant-pathogen interactions and elevated CO2: morphological changes in favour of pathogens.

    Science.gov (United States)

    Lake, Janice Ann; Wade, Ruth Nicola

    2009-01-01

    Crop losses caused by pests and weeds have been estimated at 42% worldwide, with plant pathogens responsible for almost $10 billion worth of damage in the USA in 1994 alone. Elevated carbon dioxide [ECO(2)] and associated climate change have the potential to accelerate plant pathogen evolution, which may, in turn, affect virulence. Plant-pathogen interactions under increasing CO(2) concentrations have the potential to disrupt both agricultural and natural systems severely, yet the lack of experimental data and the subsequent ability to predict future outcomes constitutes a fundamental knowledge gap. Furthermore, nothing is known about the mechanistic bases of increasing pathogen agressiveness. In the absence of information on crop species, it is shown here that plant pathogen (Erysiphe cichoracearum) aggressiveness is increased under ECO(2), together with changes in the leaf epidermal characteristics of the model plant Arabidopsis thaliana L. Stomatal density, guard cell length, and trichome numbers on leaves developing post-infection are increased under ECO(2) in direct contrast to non-infected responses. As many plant pathogens utilize epidermal features for successful infection, these responses provide a positive feedback mechanism facilitating an enhanced susceptibility of newly developed leaves to further pathogen attack. Furthermore, a screen of resistant and susceptible ecotypes suggest inherent differences in epidermal responses to ECO(2).

  17. Plant–pathogen interactions and elevated CO2: morphological changes in favour of pathogens

    Science.gov (United States)

    Lake, Janice Ann; Wade, Ruth Nicola

    2009-01-01

    Crop losses caused by pests and weeds have been estimated at 42% worldwide, with plant pathogens responsible for almost $10 billion worth of damage in the USA in 1994 alone. Elevated carbon dioxide [ECO2] and associated climate change have the potential to accelerate plant pathogen evolution, which may, in turn, affect virulence. Plant–pathogen interactions under increasing CO2 concentrations have the potential to disrupt both agricultural and natural systems severely, yet the lack of experimental data and the subsequent ability to predict future outcomes constitutes a fundamental knowledge gap. Furthermore, nothing is known about the mechanistic bases of increasing pathogen agressiveness. In the absence of information on crop species, it is shown here that plant pathogen (Erysiphe cichoracearum) aggressiveness is increased under ECO2, together with changes in the leaf epidermal characteristics of the model plant Arabidopsis thaliana L. Stomatal density, guard cell length, and trichome numbers on leaves developing post-infection are increased under ECO2 in direct contrast to non-infected responses. As many plant pathogens utilize epidermal features for successful infection, these responses provide a positive feedback mechanism facilitating an enhanced susceptibility of newly developed leaves to further pathogen attack. Furthermore, a screen of resistant and susceptible ecotypes suggest inherent differences in epidermal responses to ECO2. PMID:19470658

  18. Development of a multi-pathogen enrichment broth for simultaneous growth of five common foodborne pathogens.

    Science.gov (United States)

    Chen, Juan; Tang, Junni; Bhunia, Arun K; Tang, Cheng; Wang, Changting; Shi, Hui

    2015-01-01

    The objective of the present study was to formulate a multi-pathogen enrichment broth which could support the simultaneous growth of five common foodborne pathogens (Salmonella enterica, Staphylococcus aureus, Shigella flexneri, Listeria monocytogenes and Escherichia coli O157:H7). The formulated broth SSSLE was composed of potassium tellurite, bile salt, lithium chloride, and sodium chloride as growth-inhibitors; glucose, esculin, mannitol and sodium pyruvate as growth-promoters. Compared with the respective specific selective enrichment broths, the individual growth pattern of each target pathogen in SSSLE was equal, or even better, except in the case of S. flexneri. In mixed-culture experiments, the gram-negative bacteria showed higher growth capabilities than the gram-positive bacteria after 8-h enrichment; however, the cell numbers after 24-h enrichment indicated that SSSLE could support the concurrent growth of five target pathogens irrespective of whether pathogens were inoculated initially at equal or unequal levels. For natural food samples under the high background flora, the final cell numbers enriched in SSSLE for five targets were enough to be detected by multiplex PCR. In conclusion, SSSLE was capable of supporting the growth of five target pathogens concurrently. The new broth formulated in this study has the potential of saving time, efforts and costs in multi-pathogen enrichment procedures.

  19. Novel Micro-organisms controlling plant pathogens

    NARCIS (Netherlands)

    Köhl, J.

    2009-01-01

    The invention relates to control of pathogen caused diseases on leaves, fruits and ears in plants, such as apple scab (Venturia inaequalis by treatment of plant with an isolate of Cladosporium cladosporioides. The treatment is effective in both prevention and treatment of the fungal infection

  20. Novel Micro-organisms controlling plant pathogens

    NARCIS (Netherlands)

    Köhl, J.

    2010-01-01

    The invention relates to control of pathogen caused diseases on leaves, fruits and ears in plants, such as apple scab (Venturia inaequalis by treatment of plant with an isolate of Cladosporium cladosporioides. The treatment is effective in both prevention and treatment of the fungal infection

  1. Ewingella Americana: An Emerging True Pathogen

    Directory of Open Access Journals (Sweden)

    Syed Hassan

    2012-01-01

    Full Text Available Infections caused by Ewingella americana have been rarely reported in the literature. Most of the cases that have been reported were among the immunocompromised patients. We report a case of E. americana causing osteomyelitis and septic arthritis of the shoulder joint in a previous intravenous drug abuser. The causative pathogen was identified by synovial fluid analysis and culture.

  2. Isolation of pathogen-containing vacuoles.

    Science.gov (United States)

    Shevchuk, Olga; Steinert, Michael

    2013-01-01

    Dictyostelium discoideum cells are "professional phagocytes," as they ingest a large variety of bacteria, yeast, and inert particles. Several bacterial pathogens are able to survive intracellularly within specialized vacuoles of D. discoideum by interfering with host signaling pathways. To better understand the molecular mechanisms underlying these evolutionary conserved processes we have established a method for the isolation of pathogen-containing vacuoles (PCVs). The isolation protocol describes the infection of D. discoideum cells with the intracellular pathogen Legionella pneumophila, loading of the lysosomal compartment with colloidal iron, mechanical lysis of host cells, iodophenylnitrophenyltetrazolium (INT) heavy labeling of mitochondria, removal of nucleic acid by Benzonase treatment, separation of nuclei by low-speed centrifugation, and the magnetic removal of lysosomes. The subcellular fractionation in a discontinuous sucrose density OptiPrep gradient allows the separation of mitochondria and to prepare PCVs with high purity. The proteins isolated from PCVs have been successfully subjected to mass spectrometry and allowed to analyze pathogen-directed maturation processes of vacuoles. The method can also be applied for subsequent protein modification analyses and lipidome comparisons.

  3. Pathogenicity of Trypanosoma congolense infection following oral ...

    African Journals Online (AJOL)

    Eighty healthy adult albino rats of both sexes weighing 180-200g were used in two experiments to study the effects of oral calcium chloride treatment on the pathogenicity of Trypanosoma congolense infection. Experiment 1 was terminated at the peak of parasitaemia while experiment II was allowed to run a full course.

  4. Carp erythrodermatitis : host defense-pathogen interaction

    NARCIS (Netherlands)

    Pourreau, C.N.

    1990-01-01

    The outcome of a bacterial infection depends on the interaction between pathogen and host. The ability of the microbe to survive in the host depends on its invasive potential (i.e. spreading and multiplication), and its ability to obtain essential nutrients and to resist the

  5. Control of indigenous pathogenic bacteria in seafood

    DEFF Research Database (Denmark)

    Huss, Hans Henrik

    1997-01-01

    The pathogenic bacteria indigenous to the aquatic and general environment are listed. Their distribution in nature, prevalence in seafood and the possibilities for growth of these organisms in various types of products are outlined These data, combined with what is known regarding the epidemiology...

  6. Plant Fungal Pathogens: Methods and Protocols

    NARCIS (Netherlands)

    Bolton, M.D.; Thomma, B.P.H.J.

    2012-01-01

    Over the course of evolution, fungi have adapted to occupy specific niches, from symbiotically inhabiting the flora of the intestinal tract of mammals to saprophytic growth on leaf litter resting on the forest floor. In Plant Fungal Pathogens: Methods and Protocols, expert researchers in the field

  7. Low-Incidence, High-Consequence Pathogens

    Centers for Disease Control (CDC) Podcasts

    2014-02-21

    Dr. Stephan Monroe, a deputy director at CDC, discusses the impact of low-incidence, high-consequence pathogens globally.  Created: 2/21/2014 by National Center for Emerging and Zoonotic Infectious Diseases (NCEZID).   Date Released: 2/26/2014.

  8. Incidence of indicator organisms, opportunistic and pathogenic ...

    African Journals Online (AJOL)

    Tilapia from the supermarkets and tilapia and catfish from street vendors were analyzed for the microbial load, presence of indicator microorganisms, opportunistic and pathogenic bacteria using conventional microbiological methods. Though coliforms were found in 84% of fish from the street vendors, only 16% of the fish ...

  9. Quantitative multiplex detection of pathogen biomarkers

    Science.gov (United States)

    Mukundan, Harshini; Xie, Hongzhi; Swanson, Basil I; Martinez, Jennifer; Grace, Wynne K

    2014-10-14

    The present invention addresses the simultaneous detection and quantitative measurement of multiple biomolecules, e.g., pathogen biomarkers through either a sandwich assay approach or a lipid insertion approach. The invention can further employ a multichannel, structure with multi-sensor elements per channel.

  10. Cultural, morphological, pathogenic and molecular characterization ...

    African Journals Online (AJOL)

    Alternaria blotch (Alternaria mali) causes severe foliar damage to apple trees in Kashmir. Twenty one (21) isolates of A. mali were collected from different locations and characterized for cultural, morphological, pathogenic and molecular variations. A. mali colonies varied in their cultural behaviour ranging from velvety to ...

  11. Home Air Purifiers Eradicate Harmful Pathogens

    Science.gov (United States)

    2014-01-01

    Marshall Space Flight Center funded the University of Madison-Wisconsin to develop ethylene scrubbers to keep produce fresh in space. Akida Holdings of Jacksonville, Florida, licensed the technology and developed Airocide, an air purifier that can kill airborne pathogens. Previously designed for industrial spaces, there is now a specially designed unit for home use.

  12. Incidence of Bacterial Pathogens following Biomechanical ...

    African Journals Online (AJOL)

    A correlation exists between endodontic microflora in pulpal disease and endodontic treatment failure. This study presents data on the recoverable bacterial pathogens following biomechanical treatment of infected root canals. Standard endodontic procedure were used to access tooth pulp cavity, processed and fluid ...

  13. EPCOT, NASA and plant pathogens in space.

    Science.gov (United States)

    White, R

    1996-01-01

    Cooperative work between NASA and Walt Disney World's EPCOT Land Pavilion is described. Joint efforts include research about allelopathy in multi-species plant cropping in CELSS, LEDs as light sources in hydroponic systems, and the growth of plant pathogens in space.

  14. Use of Bacteriophages to control bacterial pathogens

    Science.gov (United States)

    Lytic bacteriophages can provide a natural method and an effective alternative to antibiotics to reduce bacterial pathogens in animals, foods, and other environments. Bacteriophages (phages) are viruses which infect bacterial cells and eventually kill them through lysis, and represent the most abun...

  15. PATHOGENIC POTENTIALS OF ESCHERICHIA COLI ISOLATED ...

    African Journals Online (AJOL)

    Electrolyte and haematological parameters in rabbits infected with pathogenic isolates of Escherichia coli from rural water supplies in Rivers State, Nigeria, where monitored. Rabbits were orally infected with suspension containing 3x107 cfu /ml of Escherichia coli to induce diarrhoea, and the electrolyte (sodium, potassium ...

  16. RNAi suppressors encoded by pathogenic human viruses

    NARCIS (Netherlands)

    de Vries, Walter; Berkhout, Ben

    2008-01-01

    RNA silencing or RNAi interference (RNAi) serves as an innate antiviral mechanism in plants, fungi and animals. Human viruses, like plant viruses, encode suppressor proteins or RNAs that block or modulate the RNAi pathway. This review summarizes the mechanisms by which pathogenic human viruses

  17. Multivalent glycoconjugates as anti-pathogenic agents

    NARCIS (Netherlands)

    Bernardi, J.; Jiménez-Barbero, J.; Casnati, A.; Castro, C.; Darbre, T.; Fieschi, F.; Finne, J.; Funken, H.; Jaeger, K.E.; Lahmann, M.; Lindhorst, T.K.; Marradi, M.; Messner, P.; Molinaro, A.; Murphy, P.V.; Nativi, C.; Oscarson, S.; Penadés, S.; Peri, F.; Pieters, R.J.; Renaudet, O.; Reymond, J.L.; Richichi, B.; Rojo, J.; Sansone, F.; Schäffer, C.; Turnbull, W.B.; Velasco-Torrijos, T.; Vidal, S.; Vincent, S.; Wennekes, T.; Zuilhof, H.; Imberty, A.

    2013-01-01

    Multivalency plays a major role in biological processes and particularly in the relationship between pathogenic microorganisms and their host that involves protein-glycan recognition. These interactions occur during the first steps of infection, for specific recognition between host and bacteria,

  18. Insect Pathogenic Fungi as Endophytes.

    Science.gov (United States)

    Moonjely, S; Barelli, L; Bidochka, M J

    2016-01-01

    In this chapter, we explore some of the evolutionary, ecological, molecular genetics, and applied aspects of a subset of insect pathogenic fungi that also have a lifestyle as endophytes and we term endophytic insect pathogenic fungi (EIPF). We focus particularly on Metarhizium spp. and Beauveria bassiana as EIPF. The discussion of the evolution of EIPF challenges a view that these fungi were first and foremost insect pathogens that eventually evolved to colonize plants. Phylogenetic evidence shows that the lineages of EIPF are most closely related to grass endophytes that diverged c. 100MYA. We discuss the relationship between genes involved in "insect pathogenesis" and those involved in "endophytism" and provide examples of genes with potential importance in lifestyle transitions toward insect pathogenicity. That is, some genes for insect pathogenesis may have been coopted from genes involved in endophytic colonization. Other genes may be multifunctional and serve in both lifestyle capacities. The interactions of EIPF with their host plants are discussed in some detail. The genetic basis for rhizospheric competence, plant communication, and nutrient exchange is examined and we highlight, with examples, the benefits of EIPF to plants, and the potential reservoir of secondary metabolites hidden within these beneficial symbioses. Copyright © 2016 Elsevier Inc. All rights reserved.

  19. Paleogene radiation of a plant pathogenic mushroom.

    Directory of Open Access Journals (Sweden)

    Martin P A Coetzee

    Full Text Available The global movement and speciation of fungal plant pathogens is important, especially because of the economic losses they cause and the ease with which they are able to spread across large areas. Understanding the biogeography and origin of these plant pathogens can provide insights regarding their dispersal and current day distribution. We tested the hypothesis of a Gondwanan origin of the plant pathogenic mushroom genus Armillaria and the currently accepted premise that vicariance accounts for the extant distribution of the species.The phylogeny of a selection of Armillaria species was reconstructed based on Maximum Parsimony (MP, Maximum Likelihood (ML and Bayesian Inference (BI. A timeline was then placed on the divergence of lineages using a Bayesian relaxed molecular clock approach.Phylogenetic analyses of sequenced data for three combined nuclear regions provided strong support for three major geographically defined clades: Holarctic, South American-Australasian and African. Molecular dating placed the initial radiation of the genus at 54 million years ago within the Early Paleogene, postdating the tectonic break-up of Gondwana.The distribution of extant Armillaria species is the result of ancient long-distance dispersal rather than vicariance due to continental drift. As these finding are contrary to most prior vicariance hypotheses for fungi, our results highlight the important role of long-distance dispersal in the radiation of fungal pathogens from the Southern Hemisphere.

  20. Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity

    DEFF Research Database (Denmark)

    Zhang, Wei; Corwin, Jason A; Copeland, Daniel

    2017-01-01

    To respond to pathogen attack, selection and associated evolution has led to the creation of plant immune system that are a highly effective and inducible defense system. Central to this system are the plant defense hormones jasmonic acid (JA) and salicylic acid (SA) and crosstalk between the two...

  1. Rapid methods: the detection of foodborne pathogens

    NARCIS (Netherlands)

    Beumer, R.R.; Hazeleger, W.C.

    2009-01-01

    Although bacteria are the first type of microorganisms that come to mind when discussing microbial food safety, they are by no means the only pathogenic foodborne microorganisms. Mycotoxin producing moulds, human enteric viruses, protozoan parasites and marine biotoxins are also of importance.

  2. Tracking Zoonotic Pathogens in Dairy Production Chains

    Science.gov (United States)

    Dairy farming is a highly productive system producing ample amounts of high-quality milk and meat from fewer cows on less land on fewer, but larger, farms. Despite this consolidation and modernization zoonotic pathogenic bacteria and protozoans remain problems on the modern dairy farm. Although past...

  3. teaching hospital: common bacterial pathogens seen.

    African Journals Online (AJOL)

    pathogens in pyogenic meningitis. Most of the delivery occurred outside the teaching hospital, even those that delivered in the hospital, some come in during labour. ' _ Conclusion: Neonatal bacterial infections are still a cause of high morbidity and mortality of the newborn in our setting. To reduce the morbidity and mortality ...

  4. 77 FR 34783 - Highly Pathogenic Avian Influenza

    Science.gov (United States)

    2012-06-12

    ... Avian Influenza AGENCY: Animal and Plant Health Inspection Service, USDA. ACTION: Interim rule... importation of bird and poultry products from regions where any subtype of highly pathogenic avian influenza... avian influenza (HPAI). On January 24, 2011, we published in the Federal Register (76 FR 4046-4056...

  5. Occurrences of pathogenic Vibrio parahaemolyticus from Vellar ...

    African Journals Online (AJOL)

    Vibrio parahaemolyticus is the predominant seafood pathogen associated with human gastroenteritis. Samples were collected from Vellar estuary, shrimp ponds and shrimp for characterization of V. parahaemolyticus. A total of 26 blue green centre (BG) Vibrio strains were isolated and characterized through biochemical ...

  6. Antimicrobial susceptibilty of potentially pathogenic halophilic Vibrio ...

    African Journals Online (AJOL)

    Surveillance of antimicrobial resistance is indispensable for empirical treatment of infections and in preventing the spread of antimicrobial resistant microorganisms. This study is aimed at determining the antibiotic susceptibility of potentially pathogenic halophylic Vibrio species isolated in Lagos, Nigeria. Susceptibility ...

  7. The Role of Pathogenic Autoantibodies in Autoimmunity

    Directory of Open Access Journals (Sweden)

    Merrill J. Rowley

    2015-11-01

    Full Text Available The serological presence of autoantibodies is diagnostic of autoimmunity, and these autoantibodies may be present for many years before the presentation of autoimmune disease (AID. Although a pathogenic role has been demonstrated for various autoantibodies reactive with cell surface and extracellular autoantigens, studies using monoclonal antibodies (mAb show not all antibodies in the polyclonal response are pathogenic. Differences depend on Fab-mediated diversity in epitope specificity, Fc-mediated effects based on immunoglobulin (Ig class and subclass, activation of complement, and the milieu in which the reaction occurs. These autoantibodies often occur in organ-specific AID and this review illustrates their pathogenic and highly specific effects. The role of autoantibodies associated with intracellular antigens is less clear. In vitro they may inhibit or adversely affect well-defined intracellular biochemical pathways, yet, in vivo they are separated from their autoantigens by multiple cellular barriers. Recent evidence that Ig can traverse cell membranes, interact with intracellular proteins, and induce apoptosis has provided new evidence for a pathogenic role for such autoantibodies. An understanding of how autoantibodies behave in the polyclonal response and their role in pathogenesis of AID may help identify populations of culprit B-cells and selection of treatments that suppress or eliminate them.

  8. Pathogenic Responses of Cowpea ( Vigna unguiculata ) Inoculated ...

    African Journals Online (AJOL)

    A study was carried out using potted plants arranged in a randomized complete block experimental design, to evaluate the pathogenic responses of Cowpea that was inoculated with cucumber mosaic virus to soil amendment with neem leaf powder. The amendments were applied at varying rates of 0.125Kg/10kg soil, ...

  9. Host-pathogen interactions in typhoid fever

    NARCIS (Netherlands)

    de Jong, H.K.

    2015-01-01

    This thesis focuses on host-pathogen interactions in Salmonella Typhi and Burkholderia pseudomallei infections and explores the interplay between these bacteria and the innate immune system. Typhoid fever is one of the most common causes of bacterial infection in low-income countries. With adequate

  10. Suppression of soil-borne plant pathogens

    NARCIS (Netherlands)

    Agtmaal, van M.

    2015-01-01

    Soil borne plant pathogens considerably reduce crop yields worldwide and are difficult to control due to their ”masked” occurrence  in the heterogeneous soil environment. This hampers the efficacy of chemical - and microbiological control agents.   Outbreaks of crop

  11. Morphological, cultural, pathogenic and molecular variability ...

    African Journals Online (AJOL)

    Alternaria blight (Alternaria brassicae) causes severe foliar damage to Indian mustard in Uttarakhand. Ten (10) isolates of A. brassicae were collected from different hosts and characterized for cultural, morphological, pathogenic and molecular variations. A. brassicae colonies varied in their cultural behaviour ranging from ...

  12. Genetic characterization of mango anthracnose pathogen ...

    African Journals Online (AJOL)

    USER

    2010-06-28

    Jun 28, 2010 ... from different agroclimatic zones of India. The isolates were evaluated for their pathogenic variability on mango seedlings and genetic characterization using random amplified polymorphic DNA (RAPD molecular techniques). The random primers OPA-1, 3, 5, 9, 11, 15, 16 and 18 were used and the twenty-.

  13. Exploiting Quorum Sensing To Confuse Bacterial Pathogens

    Science.gov (United States)

    LaSarre, Breah

    2013-01-01

    SUMMARY Cell-cell communication, or quorum sensing, is a widespread phenomenon in bacteria that is used to coordinate gene expression among local populations. Its use by bacterial pathogens to regulate genes that promote invasion, defense, and spread has been particularly well documented. With the ongoing emergence of antibiotic-resistant pathogens, there is a current need for development of alternative therapeutic strategies. An antivirulence approach by which quorum sensing is impeded has caught on as a viable means to manipulate bacterial processes, especially pathogenic traits that are harmful to human and animal health and agricultural productivity. The identification and development of chemical compounds and enzymes that facilitate quorum-sensing inhibition (QSI) by targeting signaling molecules, signal biogenesis, or signal detection are reviewed here. Overall, the evidence suggests that QSI therapy may be efficacious against some, but not necessarily all, bacterial pathogens, and several failures and ongoing concerns that may steer future studies in productive directions are discussed. Nevertheless, various QSI successes have rightfully perpetuated excitement surrounding new potential therapies, and this review highlights promising QSI leads in disrupting pathogenesis in both plants and animals. PMID:23471618

  14. Antibiotic resistance and pathogenicity factors in Staphylococcus ...

    Indian Academy of Sciences (India)

    Methicillin-resistant Staphylococcus aureus (MRSA) poses a serious problem in dairy animals suffering from mastitis. In the present study, the distribution of mastitic MRSA and antibiotic resistance was studied in 107 strains of. S. aureus isolated from milk samples from 195 infected udders. The characterizations pathogenic ...

  15. Microbial minimalism: genome reduction in bacterial pathogens.

    Science.gov (United States)

    Moran, Nancy A

    2002-03-08

    When bacterial lineages make the transition from free-living or facultatively parasitic life cycles to permanent associations with hosts, they undergo a major loss of genes and DNA. Complete genome sequences are providing an understanding of how extreme genome reduction affects evolutionary directions and metabolic capabilities of obligate pathogens and symbionts.

  16. CASE REPORT Uncommon Pathogen Bacillus Cereus Causing ...

    African Journals Online (AJOL)

    2018-01-01

    Jan 1, 2018 ... Uncommon Pathogen Bacillus Cereus Causing Subdural Empyema in a Child. Prastiya Indra Gunawan1*, Leny Kartina1, Dwiyanti Puspitasari1, Erny Erny2. OPEN ACCESS ... secondary to middle ear infection, meningitis, brain surgery, ... classic clinical syndrome is an acute febrile illness punctuated by.

  17. Antibiotic susceptibility profiles of oral pathogens

    NARCIS (Netherlands)

    Veloo, A. C. M.; Seme, K.; Raangs, Gerwin; Rurenga, P.; Singadji, Z.; Wekema - Mulder, G.; van Winkelhoff, A. J.

    2012-01-01

    Periodontitis is a bacterial disease that can be treated with systemic antibiotics. The aim of this study was to establish the antibiotic susceptibility profiles of five periodontal pathogens to six commonly used antibiotics in periodontics. A total of 247 periodontal bacterial isolates were tested

  18. Langerhans cells in innate defense against pathogens

    NARCIS (Netherlands)

    de Jong, Marein A. W. P.; Geijtenbeek, Teunis B. H.

    2010-01-01

    Langerhans cells (LCs) are at the frontline in defense against mucosal infections because they line the mucosal tissues and are ideally situated to intercept pathogens. Recent data suggest that LCs have an innate anti-HIV-1 function. LCs express the LC-specific C-type lectin Langerin that

  19. Pathogen Pressure Puts Immune Defense into Perspective

    NARCIS (Netherlands)

    Horrocks, Nicholas P. C.; Matson, Kevin D.; Tieleman, B. Irene

    2011-01-01

    The extent to which organisms can protect themselves from disease depends on both the immune defenses they maintain and the pathogens they face. At the same time, immune systems are shaped by the antigens they encounter, both over ecological and evolutionary time. Ecological immunologists often

  20. Pathogen pressure puts immune defense into perspective

    NARCIS (Netherlands)

    Horrocks, N.P.C.; Matson, K.D.; Tieleman, B.I.

    2011-01-01

    The extent to which organisms can protect themselves from disease depends on both the immune defenses they maintain and the pathogens they face. At the same time, immune systems are shaped by the antigens they encounter, both over ecological and evolutionary time. Ecological immunologists often

  1. Antibiotic resistance and pathogenicity factors in Staphylococcus ...

    Indian Academy of Sciences (India)

    Methicillin-resistant Staphylococcus aureus (MRSA) poses a serious problem in dairy animals suffering from mastitis. In the present study, the distribution of mastitic MRSA and antibiotic resistance was studied in 107 strains of S. aureus isolated from milk samples from 195 infected udders. The characterizations pathogenic ...

  2. The quantitative basis of the Arabidopsis innate immune system to endemic pathogens depends on pathogen genetics

    DEFF Research Database (Denmark)

    Corwin, Jason A; Copeland, Daniel; Feusier, Julie

    2016-01-01

    The most established model of the eukaryotic innate immune system is derived from examples of large effect monogenic quantitative resistance to pathogens. However, many host-pathogen interactions involve many genes of small to medium effect and exhibit quantitative resistance. We used...... the Arabidopsis-Botrytis pathosystem to explore the quantitative genetic architecture underlying host innate immune system in a population of Arabidopsis thaliana. By infecting a diverse panel of Arabidopsis accessions with four phenotypically and genotypically distinct isolates of the fungal necrotroph B...... shows that the genetic architecture underlying host innate immune system is extremely complex and is likely able to sense and respond to differential virulence among pathogen genotypes....

  3. The sunflower downy mildew pathogen Plasmopara halstedii.

    Science.gov (United States)

    Gascuel, Quentin; Martinez, Yves; Boniface, Marie-Claude; Vear, Felicity; Pichon, Magalie; Godiard, Laurence

    2015-02-01

    Downy mildew of sunflower is caused by Plasmopara halstedii (Farlow) Berlese & de Toni. Plasmopara halstedii is an obligate biotrophic oomycete pathogen that attacks annual Helianthus species and cultivated sunflower, Helianthus annuus. Depending on the sunflower developmental stage at which infection occurs, the characteristic symptoms range from young seedling death, plant dwarfing, leaf bleaching and sporulation to the production of infertile flowers. Downy mildew attacks can have a great economic impact on sunflower crops, and several Pl resistance genes are present in cultivars to protect them against the disease. Nevertheless, some of these resistances have been overcome by the occurrence of novel isolates of the pathogen showing increased virulence. A better characterization of P. halstedii infection and dissemination mechanisms, and the identification of the molecular basis of the interaction with sunflower, is a prerequisite to efficiently fight this pathogen. This review summarizes what is currently known about P. halstedii, provides new insights into its infection cycle on resistant and susceptible sunflower lines using scanning electron and light microscopy imaging, and sheds light on the pathogenicity factors of P. halstedii obtained from recent molecular data. Kingdom Stramenopila; Phylum Oomycota; Class Oomycetes; Order Peronosporales; Family Peronosporaceae; Genus Plasmopara; Species Plasmopara halstedii. Sunflower seedling damping off, dwarfing of the plant, bleaching of leaves, starting from veins, and visible white sporulation, initially on the lower side of cotyledons and leaves. Plasmopara halstedii infection may severely impact sunflower seed yield. In spring, germination of overwintered sexual oospores leads to sunflower root infection. Intercellular hyphae are responsible for systemic plant colonization and the induction of disease symptoms. Under humid and fresh conditions, dissemination structures are produced by the pathogen on all

  4. Genome Sequence of the Rice Pathogen Dickeya zeae Strain ZJU1202

    OpenAIRE

    Li, Bin; Shi, Yu; Ibrahim, Muhammad; Liu, He; Shan, Changlin; Wang, Yanli; Kube, Michael; Xie, Guan-Lin; Sun, Guochang

    2012-01-01

    Dickeya zeae is a phytopathogenic bacterium causing soft rot diseases in a wide range of economically important crops. Here we present the draft genome sequence of strain ZJU1202, which is the causal agent of rice foot rot in China. The draft genome will contribute to epidemiological and comparative genomic studies and the quarantine of this devastating phytopathogen.

  5. Genome sequence of the rice pathogen Dickeya zeae strain ZJU1202.

    Science.gov (United States)

    Li, Bin; Shi, Yu; Ibrahim, Muhammad; Liu, He; Shan, Changlin; Wang, Yanli; Kube, Michael; Xie, Guan-Lin; Sun, Guochang

    2012-08-01

    Dickeya zeae is a phytopathogenic bacterium causing soft rot diseases in a wide range of economically important crops. Here we present the draft genome sequence of strain ZJU1202, which is the causal agent of rice foot rot in China. The draft genome will contribute to epidemiological and comparative genomic studies and the quarantine of this devastating phytopathogen.

  6. The sentinel tree nursery as an early warning system for pathway risk assessment: Fungal pathogens associated with Chinese woody plants commonly shipped to Europe.

    Directory of Open Access Journals (Sweden)

    Anna Maria Vettraino

    Full Text Available Introduction of and invasion by alien plant pathogens represents the main cause of emerging infectious diseases affecting domesticated and wild plant species worldwide. The trade in living plants is the most common pathway of introduction. Many of the alien tree pathogens recently introduced into Europe were not previously included on any quarantine lists. To help determine the potential risk of pest introduction through trading of ornamental plants, a sentinel nursery was established in Beijing, China in 2008. The sentinel nursery planting included four of the most common ornamental woody species shipped to Europe including Ilex cornuta var. fortunae, Zelkova schneideriana, Fraxinus chinensis and Buxus microphylla. Symptoms developing on these species within the sentinel nursery were detected in 2013 and consisted of necrotic spots on leaves, canker and stem necrosis, shoot blight and shoot necrosis. Fungi associated with the trees and their symptoms included Alternaria alternata detected from all hosts; Diaporthe liquidambaris and Diaporthe capsici from bark and leaf necrosis of Zelkova schneideriana; Botryosphaeria dothidea and Nothophoma quercina from stem cankers on Fraxinus chinensis and leaf necrosis on Ilex cornuta; and Pseudonectria foliicola from leaf necrosis on Buxus microphylla. Next generation sequencing analysis from asymptomatic tissues detected eighteen OTU's at species level among which some taxa had not been previously recorded in Europe. These results clearly demonstrate that looking at trees of internationally traded species in the region of origin can reveal the presence of potentially harmful organisms of major forestry, landscape or crop trees. Results of this study also provide an indication as to how some disease agents can be introduced using pathways other than the co-generic hosts. Hence, sentinel nurseries represent one potential mechanism to address the current lack of knowledge about pests in the countries from

  7. Bacteriophages for detection of bacterial pathogens

    International Nuclear Information System (INIS)

    Kutateladze, M.

    2009-01-01

    The G. Eliava Institute of Bacteriophages, Microbiology and Virology (Tbilisi, Georgia) is one of the most famous institutions focused on bacteriophage research for the elaboration of appropriate phage methodologies for human and animal protection. The main direction of the institute is the study and production of bacteriophages against intestinal disorders (dysentery, typhoid, intesti) and purulent-septic infections (staphylococcus, streptococcus, pyophage, etc.). These preparations were successfully introduced during the Soviet era, and for decades were used throughout the former Soviet Union and in other Socialist countries for the treatment, prophylaxis, and diagnosis of various infectious diseases, including those caused by antibiotic-resistant bacterial strains. Bacteriophages were widely used for identifying and detecting infections caused by the most dangerous pathogens and causative agents of epidemiological outbreaks. The specific topic of this presentation is the phage typing of bacterial species, which can be an important method for epidemiological diagnostics. Together with different genetic methodologies - such as PCR-based methods, PFGE, plasmid fingerprinting, and ribosomal typing - phage typing is one method for identifying bacterial pathogens. The method has a high percentage of determination of phage types, high specificity of reaction, and is easy for interpretation and use by health workers. Phage typing was applied for inter-species differentiation of different species of Salmonella, S. typhi, Brucella spp, Staphylococcus aureus, E. col,i Clostridium deficile, Vibrio cholerae, Yersinia pestis, Yersinia enterocolitica, Lysteria monocytogenes, Clostridium perfringens, Clostridium tetani, plant pathogens, and other bacterial pathogens. In addition to addressing the utility and efficacy of phage typing, the paper will discuss the isolation and selection of diagnostic typing phages for interspecies differentiation of pathogens that is necessary

  8. Overexpression of Differentially Expressed Genes Identified in Non-pathogenic and Pathogenic Entamoeba histolytica Clones Allow Identification of New Pathogenicity Factors Involved in Amoebic Liver Abscess Formation.

    Directory of Open Access Journals (Sweden)

    Martin Meyer

    2016-08-01

    Full Text Available We here compared pathogenic (p and non-pathogenic (np isolates of Entamoeba histolytica to identify molecules involved in the ability of this parasite to induce amoebic liver abscess (ALA-like lesions in two rodent models for the disease. We performed a comprehensive analysis of 12 clones (A1-A12 derived from a non-pathogenic isolate HM-1:IMSS-A and 12 clones (B1-B12 derived from a pathogenic isolate HM-1:IMSS-B. "Non-pathogenicity" included the induction of small and quickly resolved lesions while "pathogenicity" comprised larger abscess development that overstayed day 7 post infection. All A-clones were designated as non-pathogenic, whereas 4 out of 12 B-clones lost their ability to induce ALAs in gerbils. No correlation between ALA formation and cysteine peptidase (CP activity, haemolytic activity, erythrophagocytosis, motility or cytopathic activity was found. To identify the molecular framework underlying different pathogenic phenotypes, three clones were selected for in-depth transcriptome analyses. Comparison of a non-pathogenic clone A1np with pathogenic clone B2p revealed 76 differentially expressed genes, whereas comparison of a non-pathogenic clone B8np with B2p revealed only 19 differentially expressed genes. Only six genes were found to be similarly regulated in the two non-pathogenic clones A1np and B8np in comparison with the pathogenic clone B2p. Based on these analyses, we chose 20 candidate genes and evaluated their roles in ALA formation using the respective gene-overexpressing transfectants. We conclude that different mechanisms lead to loss of pathogenicity. In total, we identified eight proteins, comprising a metallopeptidase, C2 domain proteins, alcohol dehydrogenases and hypothetical proteins, that affect the pathogenicity of E. histolytica.

  9. Overexpression of Differentially Expressed Genes Identified in Non-pathogenic and Pathogenic Entamoeba histolytica Clones Allow Identification of New Pathogenicity Factors Involved in Amoebic Liver Abscess Formation.

    Science.gov (United States)

    Meyer, Martin; Fehling, Helena; Matthiesen, Jenny; Lorenzen, Stephan; Schuldt, Kathrin; Bernin, Hannah; Zaruba, Mareen; Lender, Corinna; Ernst, Thomas; Ittrich, Harald; Roeder, Thomas; Tannich, Egbert; Lotter, Hannelore; Bruchhaus, Iris

    2016-08-01

    We here compared pathogenic (p) and non-pathogenic (np) isolates of Entamoeba histolytica to identify molecules involved in the ability of this parasite to induce amoebic liver abscess (ALA)-like lesions in two rodent models for the disease. We performed a comprehensive analysis of 12 clones (A1-A12) derived from a non-pathogenic isolate HM-1:IMSS-A and 12 clones (B1-B12) derived from a pathogenic isolate HM-1:IMSS-B. "Non-pathogenicity" included the induction of small and quickly resolved lesions while "pathogenicity" comprised larger abscess development that overstayed day 7 post infection. All A-clones were designated as non-pathogenic, whereas 4 out of 12 B-clones lost their ability to induce ALAs in gerbils. No correlation between ALA formation and cysteine peptidase (CP) activity, haemolytic activity, erythrophagocytosis, motility or cytopathic activity was found. To identify the molecular framework underlying different pathogenic phenotypes, three clones were selected for in-depth transcriptome analyses. Comparison of a non-pathogenic clone A1np with pathogenic clone B2p revealed 76 differentially expressed genes, whereas comparison of a non-pathogenic clone B8np with B2p revealed only 19 differentially expressed genes. Only six genes were found to be similarly regulated in the two non-pathogenic clones A1np and B8np in comparison with the pathogenic clone B2p. Based on these analyses, we chose 20 candidate genes and evaluated their roles in ALA formation using the respective gene-overexpressing transfectants. We conclude that different mechanisms lead to loss of pathogenicity. In total, we identified eight proteins, comprising a metallopeptidase, C2 domain proteins, alcohol dehydrogenases and hypothetical proteins, that affect the pathogenicity of E. histolytica.

  10. Recent developments in pathogen detection arrays: implications for fungal plant pathogens and use in practica

    NARCIS (Netherlands)

    Lievens, B.; Thomma, B.P.H.J.

    2005-01-01

    The failure to adequately identify plant pathogens from culture-based morphological techniques has led to the development of culture-independent molecular approaches. Increasingly, diagnostic laboratories are pursuing fast routine methods that provide reliable identification, sensitive detection,

  11. Dynamics of delayed pathogen infection models with pathogenic and cellular infections and immune impairment

    Science.gov (United States)

    Elaiw, A. M.; Raezah, A. A.; Alofi, B. S.

    2018-02-01

    We study the global dynamics of delayed pathogen infection models with immune impairment. Both pathogen-to-susceptible and infected-to-susceptible transmissions have been considered. Bilinear and saturated incidence rates are considered in the first and second model, respectively. We drive the basic reproduction parameter R0 which determines the global dynamics of models. Using Lyapunov method, we established the global stability of the models' steady states. The theoretical results are confirmed by numerical simulations.

  12. AquaPathogen X--A template database for tracking field isolates of aquatic pathogens

    Science.gov (United States)

    Emmenegger, Evi; Kurath, Gael

    2012-01-01

    AquaPathogen X is a template database for recording information on individual isolates of aquatic pathogens and is available for download from the U.S. Geological Survey (USGS) Western Fisheries Research Center (WFRC) website (http://wfrc.usgs.gov). This template database can accommodate the nucleotide sequence data generated in molecular epidemiological studies along with the myriad of abiotic and biotic traits associated with isolates of various pathogens (for example, viruses, parasites, or bacteria) from multiple aquatic animal host species (for example, fish, shellfish, or shrimp). The simultaneous cataloging of isolates from different aquatic pathogens is a unique feature to the AquaPathogen X database, which can be used in surveillance of emerging aquatic animal diseases and clarification of main risk factors associated with pathogen incursions into new water systems. As a template database, the data fields are empty upon download and can be modified to user specifications. For example, an application of the template database that stores the epidemiological profiles of fish virus isolates, called Fish ViroTrak (fig. 1), was also developed (Emmenegger and others, 2011).

  13. Dynamics of antibiotic resistance genes and presence of putative pathogens during ambient temperature anaerobic digestion.

    Science.gov (United States)

    Resende, J A; Diniz, C G; Silva, V L; Otenio, M H; Bonnafous, A; Arcuri, P B; Godon, J-J

    2014-12-01

    This study was focused on evaluating the persistency of antimicrobial resistance (AR) genes and putative pathogenic bacteria in an anaerobic digesters operating at mesophilic ambient temperature, in two different year seasons: summer and winter. Abundance and dynamic of AR genes encoding resistance to macrolides (ermB), aminoglycosides (aphA2) and beta-lactams (blaTEM -1 ) and persistency of potentially pathogenic bacteria in pilot-scale anaerobic digesters were investigated. AR genes were determined in the influent and effluent in both conditions. Overall, after 60 days, reduction was observed for all evaluated genes. However, during the summer, anaerobic digestion was more related to the gene reduction as compared to winter. Persistency of potentially pathogenic bacteria was also evaluated by metagenomic analyses compared to an in-house created database. Clostridium, Acinetobacter and Stenotrophomonas were the most identified. Overall, considering the mesophilic ambient temperature during anaerobic digestion (summer and winter), a decrease in pathogenic bacteria detection through metagenomic analysis and AR genes is reported. Although the mesophilic anaerobic digestion has been efficient, the results may suggest medically important bacteria and AR genes persistency during the process. This is the first report to show AR gene dynamics and persistency of potentially pathogenic bacteria through metagenomic approach in cattle manure ambient temperature anaerobic digestion. © 2014 The Society for Applied Microbiology.

  14. Efficacy of Miswak on Oral Pathogens

    Directory of Open Access Journals (Sweden)

    Adnan Sukkarwalla

    2013-01-01

    Full Text Available The oral cavity harbors a diverse and abundant number of complex oral pathogens causing different oral diseases. The development of dental caries and periodontal diseases has been found to be closely associated with various gram positive and gram negative microrganisms. Miswak, a natural toothbrush, has been documented as a potent antibacterial aid and its use is encouraged in different countries because of its good taste, texture, availability, cost and beneficial effect on teeth and supporting tissues. Different researches have been carried out to evaluate the antimicrobial effects of Miswak. This review encompasses the efficacy of Miswak on suppression of oral pathogens with respect to conducted on fungi as well as cariogenic, periodontal and endodontic bacteria.

  15. Bacteriophage interactions with marine pathogenic Vibrios

    DEFF Research Database (Denmark)

    Kalatzis, Panagiotis

    Incidents of Vibrio-associated diseases in marine aquaculture are increasingly reported on a global scale, incited also by the world’s rising temperature. Administration of antibiotics has been the most commonly applied remedy used for facing vibriosis outbreaks, giving rise to concerns about...... pathogens. The combinatory administration of virulent bacteriophages φSt2 and φGrn1, isolated against Vibrio alginolyticus significantly reduced the Vibrio load in cultures of Artemia salina live prey, decreasing subsequently the risk of a vibriosis outbreak in the marine hatchery. During infection...... to studying the interactions between marine pathogenic Vibrio and their corresponding bacteriophages, while discussing the potential and limitations of phage therapy application in the biological control of vibriosis....

  16. Bacteriophages in the control of pathogenic vibrios

    Directory of Open Access Journals (Sweden)

    Nicolás Plaza

    2018-01-01

    Full Text Available Vibrios are common inhabitants of marine and estuarine environments. Some of them can be pathogenic to humans and/or marine animals using a broad repertory of virulence factors. Lately, several reports have indicated that the incidence of Vibrio infections in humans is rising and also in animals constitute a continuing threat for aquaculture. Moreover, the continuous use of antibiotics has been accompanied by an emergence of antibiotic resistance in Vibrio species, implying a necessity for efficient treatments. One promising alternative that emerges is the use of lytic bacteriophages; however, there are some drawbacks that should be overcome to make phage therapy a widely accepted method. In this work, we discuss about the major pathogenic Vibrio species and the progress, benefits and disadvantages that have been detected during the experimental use of bacteriophages to their control.

  17. Common Features of Opportunistic Premise Plumbing Pathogens

    Directory of Open Access Journals (Sweden)

    Joseph O. Falkinham

    2015-04-01

    Full Text Available Recently it has been estimated that the annual cost of diseases caused by the waterborne pathogens Legionella pneumonia, Mycobacterium avium, and Pseudomonas aeruginosa is $500 million. For the period 2001–2012, the estimated cost of hospital admissions for nontuberculous mycobacterial pulmonary disease, the majority caused by M. avium, was almost $1 billion. These three waterborne opportunistic pathogens are normal inhabitants of drinking water—not contaminants—that share a number of key characteristics that predispose them to survival, persistence, and growth in drinking water distribution systems and premise plumbing. Herein, I list and describe these shared characteristics that include: disinfectant-resistance, biofilm-formation, growth in amoebae, growth at low organic carbon concentrations (oligotrophic, and growth under conditions of stagnation. This review is intended to increase awareness of OPPPs, identify emerging OPPPs, and challenge the drinking water industry to develop novel approaches toward their control.

  18. Formaldehyde stress responses in bacterial pathogens

    Directory of Open Access Journals (Sweden)

    Nathan Houqian Chen

    2016-03-01

    Full Text Available Formaldehyde is the simplest of all aldehydes and is highly cytotoxic. Its use and associated dangers from environmental exposure have been well documented. Detoxification systems for formaldehyde are found throughout the biological world and they are especially important in methylotrophic bacteria, which generate this compound as part of their metabolism of methanol. Formaldehyde metabolizing systems can be divided into those dependent upon pterin cofactors, sugar phosphates and those dependent upon glutathione. The more prevalent thiol-dependent formaldehyde detoxification system is found in many bacterial pathogens, almost all of which do not metabolize methane or methanol. This review describes the endogenous and exogenous sources of formaldehyde, its toxic effects and mechanisms of detoxification. The methods of formaldehyde sensing are also described with a focus on the formaldehyde responsive transcription factors HxlR, FrmR and NmlR. Finally, the physiological relevance of detoxification systems for formaldehyde in bacterial pathogens is discussed.

  19. Actinobaculum schaalii: A truly emerging pathogen?

    Science.gov (United States)

    Prigent, G.; Perillaud, C.; Amara, M.; Coutard, A.; Blanc, C.; Pangon, B.

    2016-01-01

    Actinobaculum schaalii is a Gram-positive facultative anaerobe bacillus. It is a commensal organism of the genitourinary tract. Its morphology is nonspecific. Aerobic culture is tedious, and identification techniques have long been inadequate. Thus, A. schaalii has often been considered as a nonpathogen bacterium or a contaminant. Its pathogenicity is now well described in urinary tract infections, and infections in other sites have been reported. This pathogen is considered as an emerging one following the growing use of mass spectrometry identification. In this context, the aim of our study was to evaluate the number of isolations of A. schaalii before and after the introduction of mass spectrometry in our hospital and to study the clinical circumstances in which isolates were found. PMID:27014462

  20. Microretroreflector-sedimentation immunoassays for pathogen detection.

    Science.gov (United States)

    Garvey, Gavin; Shakarisaz, David; Ruiz-Ruiz, Federico; Hagström, Anna E V; Raja, Balakrishnan; Pascente, Carmen; Kar, Archana; Kourentzi, Katerina; Rito-Palomares, Marco; Ruchhoeft, Paul; Willson, Richard C

    2014-09-16

    Point-of-care detection of pathogens is medically valuable but poses challenging trade-offs between instrument complexity and clinical and analytical sensitivity. Here we introduce a diagnostic platform utilizing lithographically fabricated micron-scale forms of cubic retroreflectors, arguably one of the most optically detectable human artifacts, as reporter labels for use in sensitive immunoassays. We demonstrate the applicability of this novel optical label in a simple assay format in which retroreflector cubes are first mixed with the sample. The cubes are then allowed to settle onto an immuno-capture surface, followed by inversion for gravity-driven removal of nonspecifically bound cubes. Cubes bridged to the capture surface by the analyte are detected using inexpensive, low-numerical aperture optics. For model bacterial and viral pathogens, sensitivity in 10% human serum was found to be 10(4) bacterial cells/mL and 10(4) virus particles/mL, consistent with clinical utility.

  1. Efficacy of miswak on oral pathogens.

    Science.gov (United States)

    Sukkarwalla, Adnan; Ali, Salima Mehboob; Lundberg, Pranee; Tanwir, Farzeen

    2013-05-01

    The oral cavity harbors a diverse and abundant number of complex oral pathogens causing different oral diseases. The development of dental caries and periodontal diseases has been found to be closely associated with various gram positive and gram negative microrganisms. Miswak, a natural toothbrush, has been documented as a potent antibacterial aid and its use is encouraged in different countries because of its good taste, texture, availability, cost and beneficial effect on teeth and supporting tissues. Different researches have been carried out to evaluate the antimicrobial effects of Miswak. This review encompasses the efficacy of Miswak on suppression of oral pathogens with respect to conducted on fungi as well as cariogenic, periodontal and endodontic bacteria.

  2. Molecular mechanisms of Escherichia coli pathogenicity.

    Science.gov (United States)

    Croxen, Matthew A; Finlay, B Brett

    2010-01-01

    Escherichia coli is a remarkable and diverse organism. This normally harmless commensal needs only to acquire a combination of mobile genetic elements to become a highly adapted pathogen capable of causing a range of diseases, from gastroenteritis to extraintestinal infections of the urinary tract, bloodstream and central nervous system. The worldwide burden of these diseases is staggering, with hundreds of millions of people affected annually. Eight E. coli pathovars have been well characterized, and each uses a large arsenal of virulence factors to subvert host cellular functions to potentiate its virulence. In this Review, we focus on the recent advances in our understanding of the different pathogenic mechanisms that are used by various E. coli pathovars and how they cause disease in humans.

  3. Susceptibility of Postharvest Pathogens to Esential Oils

    Directory of Open Access Journals (Sweden)

    Božik M.

    2017-09-01

    Full Text Available Antimicrobial volatile substances from plants represent alternatives to synthetic pesticides and food preservatives. In this study, the compositions of some essential oils were determined by gas chromatography with mass spectrometry, and the inhibitory properties of the essential oils and their components against the bacterial postharvest pathogens Pectobacterium carotovorum subsp. carotovorum (CCM 1008, Pseudomonas syringae (CCM 7018, Xanthomonas campestris (CCM 22 were determined by the microdilution method. Essential oils from oregano, cinnamon, lemongrass, lavender, clove, rosemary, tea tree, eucalyptus, garlic, and ginger and their components cinnamaldehyde, eugenol, thymol, and carvacrol were used in the tests. The essential oil components exhibited strong antibacterial activity against all tested bacteria. The oregano and cinnamon essential oils were most effective. The rosemary, lavender, tea tree, eucalyptus, garlic, and ginger oils were not effective at the tested concentrations. In conclusion, certain essential oils, particularly their components, are highly effective and could be used for the control of postharvest bacterial pathogens.

  4. Protein sequence database for pathogenic arenaviruses

    Science.gov (United States)

    Bui, Huynh-Hoa; Botten, Jason; Fusseder, Nicolas; Pasquetto, Valerie; Mothe, Bianca; Buchmeier, Michael J; Sette, Alessandro

    2007-01-01

    Background Arenaviruses are a family of rodent-borne viruses that cause several hemorrhagic fevers. These diseases can be devastating and are often lethal. Herein, to aid in the design and development of diagnostics, treatments and vaccines for arenavirus infections, we have developed a database containing protein sequences from the seven pathogenic arenaviruses (Junin, Guanarito, Sabia, Machupo, Whitewater Arroyo, Lassa and LCMV). Results The database currently contains a non-redundant set of 333 protein sequences which were manually annotated. All entries were linked to NCBI and cited PubMed references. The database has a convenient query interface including BLAST search. Sequence variability analyses were also performed and the results are hosted in the database. Conclusion The database is available at and can be used to aid in studies that require proteomic information from pathogenic arenaviruses. PMID:17288609

  5. Whole-genome sequencing of veterinary pathogens

    DEFF Research Database (Denmark)

    Ronco, Troels

    using whole-genome sequencing. The results showed that NELoc-1 and -3 and the two virulence genes netB and cnaA were significantly more associated with NE isolates from chickens compared to NE isolates from turkeys. Only NELoc-2 was associated with NE isolates from both turkeys and chickens. A putative......-electrophoresis and single-locus sequencing has been widely used to characterize such types of veterinary pathogens. However, DNA sequencing techniques have become fast and cost effective in recent years and whole-genome sequencing data provide a much higher discriminative power and reproducibility than any...... of the traditional molecular techniques. In this PhD project three important veterinary pathogens (Clostridium perfringens, Escherichia coli and Staphylococcus aureus) were investigated using whole-genome sequencing. This was done in five different scientific papers which all have been published. Paper I and II...

  6. Fusobacterium nucleatum: an emerging gut pathogen?

    Science.gov (United States)

    Allen-Vercoe, Emma; Strauss, Jaclyn; Chadee, Kris

    2011-09-01

    The Gram-negative, non-sporulating, obligately anaerobic species, Fusobacterium nucleatum, is rapidly gaining notoriety as a pathogen with a surprising number of associated diseases. Recently, we have found that F. nucleatum is a more common resident of the GI tract than originally thought, and thus, through several studies, we have attempted to determine its gut-relevant potential for virulence. We have found that F. nucleatum possesses a number of pathogenic traits with relevance to gut diseases such as inflammatory bowel disease (IBD), however, we have also documented strain-associated differences in virulence. An intriguing picture emerges that paints F. nucleatum as both conferring beneficial as well as detrimental effects on host cells; and we suggest that the ultimate effects of F. nucleatum infection in the gut are a consequence of the microbes with which this species aggregates.

  7. OSHA Bloodborne Pathogens Standards Exposure Control Plan

    Science.gov (United States)

    Luhrs, Caro Elise; Teitelbaum, Rita

    1993-01-01

    The Hummer Associates Exposure Control Plan is designed to reduce significant occupational exposure to bloodborne pathogens and infectious materials for Hummer Associates health care personnel. Under universal precautions, all patients and all body fluids are considered potentially infectious for bloodborne pathogens. Medical personnel need not be at increased risk if universal precautions are correctly understood and followed. This program covers all employees who could reasonably anticipate contact with blood or other potentially infectious materials during the performance of their job responsibilities. Although HIV and hepatitis B are mentioned most often, this program applies to all bloodborne diseases. The two main components needed to implement this program are universal precautions and engineering/work practice controls. This program covers all employees who may have occupational exposure to blood or other potentially infectious materials. Other aspects of this program are discussed.

  8. Main Concerns of Pathogenic Microorganisms in Meat

    Science.gov (United States)

    Nørrung, Birgit; Andersen, Jens Kirk; Buncic, Sava

    Although various foods can serve as sources of foodborne illness, meat and meat products are important sources of human infections with a variety of foodborne pathogens, i.e. Salmonella spp., Campylobacter jejuni/coli, Yersinia enterocolitica, Verotoxigenic E. coli and, to some extent, Listeria monocytogenes. All these may be harboured in the gastrointestinal tract of food-producing animals. The most frequent chain of events leading to meat-borne illness involves food animals, which are healthy carriers of the pathogens that are subsequently transferred to humans through production, handling and consumption of meat and meat products. Occurrences of Salmonella spp., C. jejuni/coli, Y. enterocolitica and Verotoxigenic E. coli in fresh red meat vary relatively widely, although most often are between 1 and 10%, depending on a range of factors including the organism, geographical factors, farming and/or meat production practices.

  9. Pathogens spectrum of deep human mycosis

    Directory of Open Access Journals (Sweden)

    A. B. Kulko

    2012-01-01

    Full Text Available The article describes characteristics of two different etiology groups of deep human mycosis — extremely dangerous endemic deep mycoses (histoplasmosis, coccidioidomycosis, blastomycosis, paracoccidioidomycosis, penicilliosis due to Penicillium marneffei and opportunistic deep mycosis (candidiasis, cryptococcosis, aspergillosis, mucormycosis. Information on fungal pathogens and antifungal agents is presented. The own results of cultural studies obtained during pneumomycosis diagnosis in patients with tuberculosis are shown.

  10. Synthetic Nanovaccines Against Respiratory Pathogens (SYNARP)

    Science.gov (United States)

    2012-07-01

    increasing amounts of antigen-specific antibody at this time point. Neutralizing activity against an equine infectious anemia virus expressing the...respiratory infections, the leading cause of outpatient illness and a major cause of infectious disease hospitalization in U.S. military personnel...day virus challenged). To determine the minimum amount of virus that would give a 100% mouse infectious dose (MID100) of the low pathogenic

  11. Pathogenic and opportunistic microorganisms in caves

    Directory of Open Access Journals (Sweden)

    Sanchez-Moral Sergio

    2010-01-01

    Full Text Available With today’s leisure tourism, the frequency of visits to many caves makes it necessary to know about possible potentially pathogenic microorganisms in caves, determine their reservoirs, and inform the public about the consequences of such visits. Our data reveal that caves could be a potential danger to visitors because of the presence of opportunistic microorganisms, whose existence and possible development in humans is currently unknown.

  12. Pathogen survival in chorizos: ecological factors.

    Science.gov (United States)

    Hew, Carrie M; Hajmeer, Maha N; Farver, Thomas B; Riemann, Hans P; Glover, James M; Cliver, Dean O

    2006-05-01

    This study addressed health risks from ethnic sausages produced on a small scale, without inspection, in California and elsewhere. Mexican-style chorizo, a raw pork sausage that is not cured, fermented, or smoked, was contaminated experimentally in the batter with Escherichia coli O157:H7, Listeria monocytogenes, or Salmonella serotypes and stuffed into natural casings. Formulations were based on a market survey in California. Physical parameters that were controlled were pH, water activity (a(w)), and storage temperature. The pH was adjusted with vinegar, stabilizing at 5.0 within 24 h. Initial a(w) levels adjusted with salt were 0.97, 0.95, 0.93, 0.90, and 0.85; levels declined with time because of evaporation. Pathogen numbers declined with storage up to 7 days, with few brief exceptions. Main effects and interactions of constant temperature and pH with declining a(w) on survival of the pathogens were determined. Maximum death rates occurred at higher a(w) for E. coli O157:H7 and Salmonella than for L. monocytogenes. Salt used to adjust a(w) affected palatability. Spices (black pepper, chili pepper, chili powder, cumin, garlic, guajillo pepper, oregano, and paprika) comprised another, potentially significant aspect of the sausage formulation. Some (notably black pepper and cumin) carried an indigenous microflora that contributed significantly to the microbial load of the sausage batter. Only undiluted fresh and powdered garlic exhibited a significant antimicrobial effect on the pathogens. Although each of the tested formulations caused death of the inoculated pathogens, none of the death rates was sufficiently rapid to ensure safety within the probable shelf life of the product.

  13. Outer membrane proteins of pathogenic spirochetes

    OpenAIRE

    Cullen, Paul A.; Haake, David A.; Adler, Ben

    2004-01-01

    Pathogenic spirochetes are the causative agents of several important diseases including syphilis, Lyme disease, leptospirosis, swine dysentery, periodontal disease and some forms of relapsing fever. Spirochetal bacteria possess two membranes and the proteins present in the outer membrane are at the site of interaction with host tissue and the immune system. This review describes the current knowledge in the field of spirochetal outer membrane protein (OMP) biology. What is known concerning bi...

  14. Comparative analysis of twelve Dothideomycete plant pathogens

    Energy Technology Data Exchange (ETDEWEB)

    Ohm, Robin; Aerts, Andrea; Salamov, Asaf; Goodwin, Stephen B.; Grigoriev, Igor

    2011-03-11

    The Dothideomycetes are one of the largest and most diverse groups of fungi. Many are plant pathogens and pose a serious threat to agricultural crops grown for biofuel, food or feed. Most Dothideomycetes have only a single host and related Dothideomycete species can have very diverse host plants. Twelve Dothideomycete genomes have currently been sequenced by the Joint Genome Institute and other sequencing centers. They can be accessed via Mycocosm which has tools for comparative analysis

  15. Cellphones A Modern Stayhouse For Bacterial Pathogens

    OpenAIRE

    Usha Arora; Pushpa Devi; Aarti Chadha; Sita Malhotra

    2009-01-01

    Cellphones are increasingly used by health care personnels for communication. These can harbour variouspotential pathogens and become an exogenous source of nosocomial infections. A total of 160 cellphonesbelonging to doctors and paramedical staff working in various departments at govt. medical college andhospital, Amritsar were screened for bacterial isolates. Sterile swabs moistened with nutrient broth wereused to swab the front, back and the sides of the cellphones and were subjected to cu...

  16. Protein sequence database for pathogenic arenaviruses

    OpenAIRE

    Bui, HH; Botten, J; Fusseder, N; Pasquetto, V; Mothe, B; Buchmeier, MJ; Sette, A

    2007-01-01

    Background: Arenaviruses are a family of rodent-borne viruses that cause several hemorrhagic fevers. These diseases can be devastating and are often lethal. Herein, to aid in the design and development of diagnostics, treatments and vaccines for arenavirus infections, we have developed a database containing protein sequences from the seven pathogenic arenaviruses (Junin, Guanarito, Sabia, Machupo, Whitewater Arroyo, Lassa and LCMV). Results: The database currently contains a non-redundant set...

  17. Occurrence of antimicrobial resistance among bacterial pathogens

    OpenAIRE

    Hendriksen, Rene S.; Mevius, Dik J.; Schroeter, Andreas; Teale, Christopher; Jouy, Eric; Butaye, Patrick; Franco, Alessia; Utinane, Andra; Amado, Alice; Moreno, Miguel; Greko, Christina; Stärk, Katharina D.C.; Berghold, Christian; Myllyniemi, Anna-Liisa; Hoszowski, Andrzej

    2008-01-01

    Background: The project "Antibiotic resistance in bacteria of animal origin – II" (ARBAO-II) was funded by the European Union (FAIR5-QLK2-2002-01146) for the period 2003–05. The aim of this project was to establish a program for the continuous monitoring of antimicrobial susceptibility of pathogenic and indicator bacteria from food animals using validated and harmonised methodologies. In this report the first data on the occurrence of antimicrobial resistance among bacteria cau...

  18. PHIDIAS- Pathogen Host Interaction Data Integration and Analysis

    Indian Academy of Sciences (India)

    PHIDIAS- Pathogen Host Interaction Data Integration and Analysis- allows searching of integrated genome sequences, conserved domains and gene expressions data related to pathogen host interactions in high priority agents for public health and security ...

  19. Plant pathology: monitoring a pathogen-targeted host protein.

    Science.gov (United States)

    Ellis, Jeff; Dodds, Peter

    2003-05-13

    A plant protein RIN4 is targeted and modified by bacterial pathogens as part of the disease process. At least two host resistance proteins monitor this pathogen interference and trigger the plant's defence responses.

  20. Surveillance of multidrug resistant bacteria pathogens from female ...

    African Journals Online (AJOL)

    Highest sensitivity was observed with gatifloxacin, imipenam and piperacillin and tazobactum. Thus, according to this study, these antibiotics can be recommended against multi drug resistant bacteria pathogens. Keywords: Multidrug resistance, female infertility, bacteria pathogens. African Journal of Biotechnology Vol.

  1. Biocontrol interventions for inactivation of foodborne pathogens on produce

    Science.gov (United States)

    Post-harvest interventions for control of foodborne pathogens on minimally processed foods are crucial for food safety. Biocontrol interventions have the primary objective of developing novel antagonists in combinations with physical and chemical interventions to inactivate pathogenic microbes. Ther...

  2. Sensitivity of mechanically transmitted pathogens to different disinfectants

    Science.gov (United States)

    The intensive hands-on activities of greenhouse tomato propagation and production favor the spread of mechanically transmitted pathogens, particularly Clavibacter michiganensis subsp. michiganensis (Cmm), viruses, viroids, and Botrytis cinerea. These pathogens can spread during crop handling, graft...

  3. Swiss Army Pathogen: The Salmonella Entry Toolkit

    Directory of Open Access Journals (Sweden)

    Peter J. Hume

    2017-08-01

    Full Text Available Salmonella causes disease in humans and animals ranging from mild self-limiting gastroenteritis to potentially life-threatening typhoid fever. Salmonellosis remains a considerable cause of morbidity and mortality globally, and hence imposes a huge socio-economic burden worldwide. A key property of all pathogenic Salmonella strains is the ability to invade non-phagocytic host cells. The major determinant of this invasiveness is a Type 3 Secretion System (T3SS, a molecular syringe that injects virulence effector proteins directly into target host cells. These effectors cooperatively manipulate multiple host cell signaling pathways to drive pathogen internalization. Salmonella does not only rely on these injected effectors, but also uses several other T3SS-independent mechanisms to gain entry into host cells. This review summarizes our current understanding of the methods used by Salmonella for cell invasion, with a focus on the host signaling networks that must be coordinately exploited for the pathogen to achieve its goal.

  4. Pathogenic conversion of coagulase-negative staphylococci.

    Science.gov (United States)

    Yu, Wenqi; Kim, Hwan Keun; Rauch, Sabine; Schneewind, Olaf; Missiakas, Dominique

    2017-02-01

    Humans and animals are colonized by members of the genus Staphylococcus, however only some of these species evolved to cause invasive disease. The genetic basis for conversion of commensal staphylococci into pathogens is not known. We hypothesized that Staphylococcus aureus genes for coagulation and agglutination in vertebrate blood (coa, vwb and clfA) may support pathogenic conversion. Expression of coa and vwb in Staphylococcus epidermidis or Staphylococcus simulans supported a coagulase-positive phenotype but not the ability to cause disease in a mouse model of bloodstream infection. However, the simultaneous expression of coa, vwb and clfA in coagulase-negative staphylococci enabled bacterial agglutination in plasma and enhanced survival of S. simulans in human whole blood. Agglutination of S. simulans in the bloodstream of infected mice upon expression of coa, vwb and clfA provided also a mean for dissemination and replication in distal organs. Thus, the acquisition of genes for bacterial agglutination with fibrin appear sufficient for the conversion of commensal staphylococci into invasive pathogens. Copyright © 2016 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

  5. Review of soybean resistance to pathogens

    Directory of Open Access Journals (Sweden)

    Vidić Miloš

    2013-01-01

    Full Text Available This paper presents an overview of the research on soybean resistance to pathogens. The review included most harmful agents of soybean diseases in Serbia, as well as those that are potentially harmful. Development and cultivation of resistant cultivars is the most efficient, economical and environmentally acceptable control measure for plant disease. It points to the variability in pathogenicity (physiological races of parasites, especially expressed in Phytophthora sojae, Peronospora manshurica and Pseudomonas syringae pv. glycinea, which requires continuous breeding for resistance. Resistant, partially resistant and moderately susceptible genotypes, which are used as donors of resistance genes to different pathogens, are listed in this paper. Also, avirulent genes in the parasite and resistance genes in soybean are indicated. Gene mapping significantly contributes to better understanding of the mode of inheritance and consequently, more efficient breeding for disease resistance. Significant improvement is expected by using molecular techniques, especially in dealing with Sclerotinia sclerotiorum, Pseudomonas syringae pv. glycinea and Phomopsis longicolla. For these parasites only partial resistance has been reported but not complete resistance.

  6. Clostridium difficile is an autotrophic bacterial pathogen.

    Directory of Open Access Journals (Sweden)

    Michael Köpke

    Full Text Available During the last decade, Clostridium difficile infection showed a dramatic increase in incidence and virulence in the Northern hemisphere. This incessantly challenging disease is the leading cause of antibiotic-associated and nosocomial infectious diarrhea and became life-threatening especially among elderly people. It is generally assumed that all human bacterial pathogens are heterotrophic organisms, being either saccharolytic or proteolytic. So far, this has not been questioned as colonization of the human gut gives access to an environment, rich in organic nutrients. Here, we present data that C. difficile (both clinical and rumen isolates is also able to grow on CO2+H2 as sole carbon and energy source, thus representing the first identified autotrophic bacterial pathogen. Comparison of several different strains revealed high conservation of genes for autotrophic growth and showed that the ability to use gas mixtures for growth decreases or is lost upon prolonged culturing under heterotrophic conditions. The metabolic flexibility of C. difficile (heterotrophic growth on various substrates as well as autotrophy could allow the organism in the gut to avoid competition by niche differentiation and contribute to its survival when stressed or in unfavorable conditions that cause death to other bacteria. This may be an important trait for the pathogenicity of C. difficile.

  7. The Venturia Apple Pathosystem: Pathogenicity Mechanisms and Plant Defense Responses

    Directory of Open Access Journals (Sweden)

    Gopaljee Jha

    2009-01-01

    Full Text Available Venturia inaequalis is the causal agent of apple scab, a devastating disease of apple. We outline several unique features of this pathogen which are useful for molecular genetics studies intended to understand plant-pathogen interactions. The pathogenicity mechanisms of the pathogen and overview of apple defense responses, monogenic and polygenic resistance, and their utilization in scab resistance breeding programs are also reviewed.

  8. Identifying Pathogenicity Islands in Bacterial Pathogenomics Using Computational Approaches

    OpenAIRE

    Che, Dongsheng; Hasan, Mohammad Shabbir; Chen, Bernard

    2014-01-01

    High-throughput sequencing technologies have made it possible to study bacteria through analyzing their genome sequences. For instance, comparative genome sequence analyses can reveal the phenomenon such as gene loss, gene gain, or gene exchange in a genome. By analyzing pathogenic bacterial genomes, we can discover that pathogenic genomic regions in many pathogenic bacteria are horizontally transferred from other bacteria, and these regions are also known as pathogenicity islands (PAIs). PAI...

  9. PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens

    Directory of Open Access Journals (Sweden)

    Akhras Michael

    2006-11-01

    Full Text Available Abstract Background Here we describe PathogenMIPer, a software program for designing molecular inversion probe (MIP oligonucleotides for use in pathogen identification and detection. The software designs unique and specific oligonucleotide probes targeting microbial or other genomes. The tool tailors all probe sequence components (including target-specific sequences, barcode sequences, universal primers and restriction sites and combines these components into ready-to-order probes for use in a MIP assay. The system can harness the genetic variability available in an entire genome in designing specific probes for the detection of multiple co-infections in a single tube using a MIP assay. Results PathogenMIPer can accept sequence data in FASTA file format, and other parameter inputs from the user through a graphical user interface. It can design MIPs not only for pathogens, but for any genome for use in parallel genomic analyses. The software was validated experimentally by applying it to the detection of human papilloma virus (HPV as a model system, which is associated with various human malignancies including cervical and skin cancers. Initial tests of laboratory samples using the MIPs developed by the PathogenMIPer to recognize 24 different types of HPVs gave very promising results, detecting even a small viral load of single as well as multiple infections (Akhras et al, personal communication. Conclusion PathogenMIPer is a software for designing molecular inversion probes for detection of multiple target DNAs in a sample using MIP assays. It enables broader use of MIP technology in the detection through genotyping of pathogens that are complex, difficult-to-amplify, or present in multiple subtypes in a sample.

  10. Isolation of antibiotic-resistant pathogenic and potentially ...

    African Journals Online (AJOL)

    Objective: Isolation of potentially pathogenic bacteria from carpets in hospitals has been reported earlier, but not from carpets in mosques. The aim of the present study is to determine the pathogenic and potentially pathogenic bacteria that may exist on the carpets of mosques in Tripoli, Libya. Methods: Dust samples from ...

  11. Comparison of procedures to evaluate the pathogenicity of ...

    African Journals Online (AJOL)

    Ceratocystis fimbriata sensu lato(s.l.) is an important pathogen of Eucalyptus. Pathogenicity of isolates has typically been evaluated by inoculating seedlings under greenhouse conditions. It is, however, not clear how accurately this reflects pathogenicity under field conditions. In this study, five techniques to potentially ...

  12. Isolation and characterization of seed-Borne pathogenic bacteria ...

    African Journals Online (AJOL)

    The isolated bacterial strains were identified based on colony morphology, biochemical, serological and pathogenicity tests. Acidovorax avenae subsp. avenae, the causal agent of brown stripe was detected in 63% of the seed samples tested indicating that this pathogen is widely distributed in Tanzania. Other pathogens ...

  13. A study of pathogenic organisms habitation preferences in fish organs

    African Journals Online (AJOL)

    Fish pathogens may attack any convenient part of the host. But studies indicate that pathogens of fish tend to reveal their preference for particular fish organs. The present study set out with the objective of identifying the organs most inhabited by these pathogenic organisms in fishes. Collecting samples of Clarias gariepinus ...

  14. Cladosporium fulvum effector proteins and their role in pathogen virulence

    NARCIS (Netherlands)

    Esse, van H.P.

    2008-01-01

    Cladosporium fulvum (syn. Passalora fulva) is a biotrophic fungal pathogen that causes leaf mould of tomato (Solanum esculentum). Chapter 1 is a “pathogen profile” describing the biology of the pathogen. During growth in the leaf apoplast, the intercellular space surrounding the mesophyll cells, the

  15. Host-pathogen interactions: A cholera surveillance system

    Energy Technology Data Exchange (ETDEWEB)

    Wright, Aaron T.

    2016-02-22

    Bacterial pathogen-secreted proteases may play a key role in inhibiting a potentially widespread host-pathogen interaction. Activity-based protein profiling enabled the identification of a major Vibrio cholerae serine protease that limits the ability of a host-derived intestinal lectin to bind to the bacterial pathogen in vivo.

  16. Pathogen propagation in cultured three-dimensional tissue mass

    Science.gov (United States)

    Goodwin, Thomas J. (Inventor); Spaulding, Glenn F. (Inventor); Wolf, David A. (Inventor)

    2000-01-01

    A process for propagating a pathogen in a three-dimensional tissue mass cultured at microgravity conditions in a culture vessel containing culture media and a culture matrix is provided. The three-dimensional tissue mass is inoculated with a pathogen and pathogen replication in the cells of the tissue mass achieved.

  17. Isolation of antibiotic-resistant pathogenic and potentially ...

    African Journals Online (AJOL)

    2010-09-13

    Sep 13, 2010 ... aureus. Conclusion: Contamination of carpets in mosques of Tripoli with antibiotic-resistant pathogenic and potentially pathogenic bacteria may pose a .... and S. aureus were detected in carpets from the mosques in Tripoli. Salmonella spp. are important foodborne pathogens worldwide. They are the most.

  18. [A case of human highly pathogenic avian influenza in Shenzhen, China: application of field epidemiological study].

    Science.gov (United States)

    Zhang, Shun-Xiang; Cheng, Jin-Quan; Ma, Han-Wu; He, Jian-Fan; Cheng, Xiao-Wen; Jiang, Li-Juan; Mou, Jin; Wu, Chun-Li; Lv, Xing; Zhang, Shao-Hua; Zhang, Ya-De; Wu, Yong-Sheng; Wang, Xin

    2008-03-01

    birds and bird's coops in the market for H5 nucleic acid were tested and all were negative. The influenza H5N1 virus isolated for the case was named as A/Guangdong/02/2006 (H5N1) or GD/2/06. Phylogenetic relationships and molecular characterization analysis revealed that all the segments of the H5N1 virus named GD/2/06 still belonged to avian segments. Investigation process and control measures were released to the general public through the media. Soon after the laboratory confirmation, information was released to the society, as well as Hong Kong Center for Health Protection. Local Departments of Agriculture, Industries & Business, and Entry-Exit Inspection & Quarantine Bureau together with the Public Health Department put up combined actions. A computer-based telephone survey was initiated to investigate attitudes and knowledge of residents in town, revealing that positive atmosphere dominated and no panic existed. Rapid laboratory diagnosis of the virus was the key for successful treatment and survival result of the case. Still, the pathogen was from birds resources. No human-to-human transmission was observed, however, source of infection was unclear. Field epidemiological study could offer special methods for the responses of emergency public health problems.

  19. Phylogeographic Diversity of Pathogenic and Non-Pathogenic Hantaviruses in Slovenia

    Science.gov (United States)

    Korva, Miša; Knap, Nataša; Resman Rus, Katarina; Fajs, Luka; Grubelnik, Gašper; Bremec, Matejka; Knapič, Tea; Trilar, Tomi; Avšič Županc, Tatjana

    2013-01-01

    Slovenia is a very diverse country from a natural geography point of view, with many different habitats within a relatively small area, in addition to major geological and climatic differences. It is therefore not surprising that several small mammal species have been confirmed to harbour hantaviruses: A. flavicollis (Dobrava virus), A. agrarius (Dobrava virus–Kurkino), M. glareolus (Puumala virus), S. areanus (Seewis virus), M. agrestis, M. arvalis and M. subterraneus (Tula virus). Three of the viruses, namely the Dobrava, Dobrava–Kurkino and Puumala viruses, cause disease in humans, with significant differences in the severity of symptoms. Due to changes in haemorrhagic fever with renal syndrome cases (HFRS) epidemiology, a detailed study on phylogenetic diversity and molecular epidemiology of pathogenic and non-pathogenic hantaviruses circulating in ecologically diverse endemic regions was performed. The study presents one of the largest collections of hantavirus L, M and S sequences obtained from hosts and patients within a single country. Several genetic lineages were determined for each hantavirus species, with higher diversity among non-pathogenic compared to pathogenic viruses. For pathogenic hantaviruses, a significant geographic clustering of human- and rodent-derived sequences was confirmed. Several geographic and ecological factors were recognized as influencing and limiting the formation of endemic areas. PMID:24335778

  20. Resequencing Pathogen Microarray (RPM) for prospective detection and identification of emergent pathogen strains and variants

    Science.gov (United States)

    Tibbetts, Clark; Lichanska, Agnieszka M.; Borsuk, Lisa A.; Weslowski, Brian; Morris, Leah M.; Lorence, Matthew C.; Schafer, Klaus O.; Campos, Joseph; Sene, Mohamadou; Myers, Christopher A.; Faix, Dennis; Blair, Patrick J.; Brown, Jason; Metzgar, David

    2010-04-01

    High-density resequencing microarrays support simultaneous detection and identification of multiple viral and bacterial pathogens. Because detection and identification using RPM is based upon multiple specimen-specific target pathogen gene sequences generated in the individual test, the test results enable both a differential diagnostic analysis and epidemiological tracking of detected pathogen strains and variants from one specimen to the next. The RPM assay enables detection and identification of pathogen sequences that share as little as 80% sequence similarity to prototype target gene sequences represented as detector tiles on the array. This capability enables the RPM to detect and identify previously unknown strains and variants of a detected pathogen, as in sentinel cases associated with an infectious disease outbreak. We illustrate this capability using assay results from testing influenza A virus vaccines configured with strains that were first defined years after the design of the RPM microarray. Results are also presented from RPM-Flu testing of three specimens independently confirmed to the positive for the 2009 Novel H1N1 outbreak strain of influenza virus.

  1. Mycological assessment of sediments in Ligurian beaches in the Northwestern Mediterranean: pathogens and opportunistic pathogens.

    Science.gov (United States)

    Salvo, Vanessa-Sarah; Fabiano, Mauro

    2007-05-01

    Sediments of five Ligurian beaches in compliance with European Union bathing water regulations were studied based on the characteristics of the fungal assemblage during the tourism season. Among the 179 taxa of filamentous fungi isolated, 120 were opportunistic pathogens, such as Acremonium sp., and the genus Penicillium was also present as the pathogenic species P. citrinum. Furthermore, 5% of the total filamentous fungi belonged to the dermatophyte genus Microsporum, whose species can cause mycoses. Beach sediments showed elevated densities of opportunistic pathogens, of pathogenic filamentous fungi, and of yeasts during the tourism season. Although monitoring of beach sediments for microbiological contamination is not mandatory, and disease transmission from sediments has not yet been demonstrated, our study suggests that beach sediments may act as a reservoir of potential pathogens, including fungi. In addition, the mycoflora displayed high sensitivity to critical environmental situations in the beaches studied. Therefore, the fungal community can be a useful tool for assessing the quality of sandy beaches in terms of sanitary and environmental quality.

  2. Phylogeographic Diversity of Pathogenic and Non-Pathogenic Hantaviruses in Slovenia

    Directory of Open Access Journals (Sweden)

    Miša Korva

    2013-12-01

    Full Text Available Slovenia is a very diverse country from a natural geography point of view, with many different habitats within a relatively small area, in addition to major geological and climatic differences. It is therefore not surprising that several small mammal species have been confirmed to harbour hantaviruses: A. flavicollis (Dobrava virus, A. agrarius (Dobrava virus–Kurkino, M. glareolus (Puumala virus, S. areanus (Seewis virus,M. agrestis, M. arvalis and M. subterraneus (Tula virus. Three of the viruses, namely the Dobrava, Dobrava–Kurkino and Puumala viruses, cause disease in humans, with significant differences in the severity of symptoms. Due to changes in haemorrhagic fever with renal syndrome cases (HFRS epidemiology, a detailed study on phylogenetic diversity and molecular epidemiology of pathogenic and non-pathogenic hantaviruses circulating in ecologically diverse endemic regions was performed. The study presents one of the largest collections of hantavirus L, M and S sequences obtained from hosts and patients within a single country. Several genetic lineages were determined for each hantavirus species, with higher diversity among non-pathogenic compared to pathogenic viruses. For pathogenic hantaviruses, a significant geographic clustering of human- and rodent-derived sequences was confirmed. Several geographic and ecological factors were recognized as influencing and limiting the formation of endemic areas.

  3. Gamma radiation use as a quarantine treatment alternative for cut flowers; Uso da radiacao gama como alternativa de tratamento quarentenario de flores cortadas

    Energy Technology Data Exchange (ETDEWEB)

    Kikichi, Olivia Kimiko [Instituto de Pesquisas Energeticas e Nucleares (IPEN), Sao Paulo, SP (Brazil)

    1999-11-01

    Methyl bromide is a broad spectrum pesticide to control insects, nematodes, weeds, pathogens and rodents It is effective to commodity treatment designed for exportation/importation, but is also toxic for human being. Besides, it is an ozone layer depleting substance and many countries are interested in finding other less damaging alternatives. The methyl bromide shall be banned until 2015 and one promising alternative is the radiation. It can be effective for some vegetables, like fresh cut flowers. The tolerance to gamma radiation was observed in some cut flowers. Dianthus (Caryophyllaceae), Gypsophyla (Caryophyllaceae), Gomphrena (Amarantaceae), Celosia (Amarantaceae) and Narcissus (Amaryllidaceae) were tolerant to 750 Gy. Heliconia and Strelitzia (Musaceae) were not tolerant, presenting a severe browning of the colored sepals. Anthurium (Araceae) was also sensitive to 750 Gy, presenting browning of the spike, discoloration and black spots on the sepals. The radiation inhibited the bud opening of Hemerocallis (Liliaceae) and Gladiolus (Iridaceae). Gerbera (Compositae) and Callistemon (Myrtaceae) wilted before the control flowers. Helianthus (Compositae) leaves wilted before the flowers because of the radiation. (author) 7 refs., 2 tabs.; e-mail: okikuchi at net.ipen.br

  4. Strategies of Intracellular Pathogens for Obtaining Iron from the Environment

    Directory of Open Access Journals (Sweden)

    Nidia Leon-Sicairos

    2015-01-01

    Full Text Available Most microorganisms are destroyed by the host tissues through processes that usually involve phagocytosis and lysosomal disruption. However, some organisms, called intracellular pathogens, are capable of avoiding destruction by growing inside macrophages or other cells. During infection with intracellular pathogenic microorganisms, the element iron is required by both the host cell and the pathogen that inhabits the host cell. This minireview focuses on how intracellular pathogens use multiple strategies to obtain nutritional iron from the intracellular environment in order to use this element for replication. Additionally, the implications of these mechanisms for iron acquisition in the pathogen-host relationship are discussed.

  5. The human fungal pathogen Cryptococcus can complete its sexual cycle during a pathogenic association with plants.

    Science.gov (United States)

    Xue, Chaoyang; Tada, Yasuomi; Dong, Xinnian; Heitman, Joseph

    2007-06-14

    Cryptococcus is a globally distributed human fungal pathogen that primarily afflicts immunocompromised individuals. How and why this human fungal pathogen associates with plants and how this environmental niche influences its life cycle remains a mystery. We established Cryptococcus-Arabidopsis and Cryptococcus-Eucalyptus systems and discovered that Cryptococcus proliferates and mates on plant surfaces. Mating efficiency of C. gattii was markedly enhanced on plants and myo-inositol and indole acetic acid were specific plant products that stimulated mating. On Arabidopsis, dwarfing and chlorosis were observed following infection with a fungal mixture of two opposite mating-type strains, but not with either mating-type alone. This infection process is countered by the plant jasmonate-mediated defense mechanism. These findings reveal that Cryptococcus can parasitically interact with plants to complete its sexual cycle, which may impact an understanding of the origin and evolution of both plant and animal fungal pathogens in nature.

  6. Comparative analysis of lipopolysaccharides of pathogenic and intermediately pathogenic Leptospira species.

    Science.gov (United States)

    Patra, Kailash P; Choudhury, Biswa; Matthias, Michael M; Baga, Sheyenne; Bandyopadhya, Keya; Vinetz, Joseph M

    2015-10-30

    Lipopolysaccharides (LPS) are complex, amphipathic biomolecules that constitute the major surface component of Gram-negative bacteria. Leptospira, unlike other human-pathogenic spirochetes, produce LPS, which is fundamental to the taxonomy of the genus, involved in host-adaption and also the target of diagnostic antibodies. Despite its significance, little is known of Leptospira LPS composition and carbohydrate structure among different serovars. LPS from Leptospira interrogans serovar Copenhageni strain L1-130, a pathogenic species, and L. licerasiae serovar Varillal strain VAR 010, an intermediately pathogenic species, were studied. LPS prepared from aqueous and phenol phases were analyzed separately. L. interrogans serovar Copenhageni has additional sugars not found in L. licerasiae serovar Varillal, including fucose (2.7%), a high amount of GlcNAc (12.3%), and two different types of dideoxy HexNAc. SDS-PAGE indicated that L. interrogans serovar Copenhageni LPS had a far higher molecular weight and complexity than that of L. licerasiae serovar Varillal. Chemical composition showed that L. interrogans serovar Copenhageni LPS has an extended O-antigenic polysaccharide consisting of sugars, not present in L. licerasiae serovar Varillal. Arabinose, xylose, mannose, galactose and L-glycero-D-mannoheptose were detected in both the species. Fatty acid analysis by gas chromatography-mass spectrometry (GC-MS) showed the presence of hydroxypalmitate (3-OH-C16:0) only in L. interrogans serovar Copenhageni. Negative staining electron microscopic examination of LPS showed different filamentous morphologies in L. interrogans serovar Copenhageni vs. L. licerasiae serovar Varillal. This comparative biochemical analysis of pathogenic and intermediately pathogenic Leptospira LPS reveals important carbohydrate and lipid differences that underlie future work in understanding the mechanisms of host-adaptation, pathogenicity and vaccine development in leptospirosis.

  7. Identifying Pathogenicity Islands in Bacterial Pathogenomics Using Computational Approaches

    Directory of Open Access Journals (Sweden)

    Dongsheng Che

    2014-01-01

    Full Text Available High-throughput sequencing technologies have made it possible to study bacteria through analyzing their genome sequences. For instance, comparative genome sequence analyses can reveal the phenomenon such as gene loss, gene gain, or gene exchange in a genome. By analyzing pathogenic bacterial genomes, we can discover that pathogenic genomic regions in many pathogenic bacteria are horizontally transferred from other bacteria, and these regions are also known as pathogenicity islands (PAIs. PAIs have some detectable properties, such as having different genomic signatures than the rest of the host genomes, and containing mobility genes so that they can be integrated into the host genome. In this review, we will discuss various pathogenicity island-associated features and current computational approaches for the identification of PAIs. Existing pathogenicity island databases and related computational resources will also be discussed, so that researchers may find it to be useful for the studies of bacterial evolution and pathogenicity mechanisms.

  8. Evolution and genome architecture in fungal plant pathogens.

    Science.gov (United States)

    Möller, Mareike; Stukenbrock, Eva H

    2017-12-01

    The fungal kingdom comprises some of the most devastating plant pathogens. Sequencing the genomes of fungal pathogens has shown a remarkable variability in genome size and architecture. Population genomic data enable us to understand the mechanisms and the history of changes in genome size and adaptive evolution in plant pathogens. Although transposable elements predominantly have negative effects on their host, fungal pathogens provide prominent examples of advantageous associations between rapidly evolving transposable elements and virulence genes that cause variation in virulence phenotypes. By providing homogeneous environments at large regional scales, managed ecosystems, such as modern agriculture, can be conducive for the rapid evolution and dispersal of pathogens. In this Review, we summarize key examples from fungal plant pathogen genomics and discuss evolutionary processes in pathogenic fungi in the context of molecular evolution, population genomics and agriculture.

  9. Volatile metabolites of pathogens: a systematic review.

    Directory of Open Access Journals (Sweden)

    Lieuwe D J Bos

    2013-05-01

    Full Text Available Ideally, invading bacteria are detected as early as possible in critically ill patients: the strain of morbific pathogens is identified rapidly, and antimicrobial sensitivity is known well before the start of new antimicrobial therapy. Bacteria have a distinct metabolism, part of which results in the production of bacteria-specific volatile organic compounds (VOCs, which might be used for diagnostic purposes. Volatile metabolites can be investigated directly in exhaled air, allowing for noninvasive monitoring. The aim of this review is to provide an overview of VOCs produced by the six most abundant and pathogenic bacteria in sepsis, including Staphylococcus aureus, Streptococcus pneumoniae, Enterococcus faecalis, Pseudomonas aeruginosa, Klebsiella pneumoniae, and Escherichia coli. Such VOCs could be used as biological markers in the diagnostic approach of critically ill patients. A systematic review of existing literature revealed 31 articles. All six bacteria of interest produce isopentanol, formaldehyde, methyl mercaptan, and trimethylamine. Since humans do not produce these VOCs, they could serve as biological markers for presence of these pathogens. The following volatile biomarkers were found for identification of specific strains: isovaleric acid and 2-methyl-butanal for Staphylococcus aureus; 1-undecene, 2,4-dimethyl-1-heptane, 2-butanone, 4-methyl-quinazoline, hydrogen cyanide, and methyl thiocyanide for Pseudomonas aeruginosa; and methanol, pentanol, ethyl acetate, and indole for Escherichia coli. Notably, several factors that may effect VOC production were not controlled for, including used culture media, bacterial growth phase, and genomic variation within bacterial strains. In conclusion, VOCs produced by bacteria may serve as biological markers for their presence. Goal-targeted studies should be performed to identify potential sets of volatile biological markers and evaluate the diagnostic accuracy of these markers in critically

  10. Pathogenic bacterial contaminations in hospital cafeteria foods.

    Science.gov (United States)

    Rattanasena, Paweena; Somboonwatthanakul, Issaraporn

    2010-02-01

    This study aims to examine the pathogenic bacterial contaminations in foods sold in hospital cafeteria. A study was conducted between April and September of 2008 using cafeteria located in Mahasarakham provincial hospital, Thailand, as a study area. The cafeteria foods were evaluated for contaminations with Escherichia coli, Staphylococcus aureus, Salmonella typhimurium and Streptococcus faecalis, which have been earlier reported to cause nosocomial outbreaks. Of 33 different types of ready-to-eat foods, the majority (54.54%) were found to have bacteria >10(7) colony forming units per gram of food (cfu g(-1)), whereas 36.36% and only 9.10% of them were found to have bacteria at 10(6)-10(7) and foods were also shown to be contaminated with Escherichia coli (57.57%), followed by Streptococcus faecalis (51.51%), Staphylococcus aureus (48.48%) and Salmonella typhimurium (27.27%), respectively. In contrast, of 7 different types of freshly-made foods, the majority (71.42%) were found to have bacterial foods (42.85%), followed by Escherichia coli and Streptococcus faecalis at equal percentages (14.28%). None of the freshly-made foods were found to be contaminated with Streptococcus typhimurium. The results concluded that a number of ready-to-eat foods sold in the Mahasarakham hospital cafeteria were contaminated with several pathogenic bacteria at unacceptable levels. Healthcare authorities should be more aware that ready-to-eat cafeteria foods that are heavily contaminated with pathogenic bacteria may be harmful to healthcare workers and visitors and may result in nosocomial infections of the patients.

  11. Lawrence Livermore National Laboratory Workshop Characterization of Pathogenicity, Virulence and Host-Pathogen Interactions

    Energy Technology Data Exchange (ETDEWEB)

    Krishnan, A

    2006-08-30

    The threats of bio-terrorism and newly emerging infectious diseases pose serious challenges to the national security infrastructure. Rapid detection and diagnosis of infectious disease in human populations, as well as characterizing pathogen biology, are critical for reducing the morbidity and mortality associated with such threats. One of the key challenges in managing an infectious disease outbreak, whether through natural causes or acts of overt terrorism, is detection early enough to initiate effective countermeasures. Much recent attention has been directed towards the utility of biomarkers or molecular signatures that result from the interaction of the pathogen with the host for improving our ability to diagnose and mitigate the impact of a developing infection during the time window when effective countermeasures can be instituted. Host responses may provide early signals in blood even from localized infections. Multiple innate and adaptive immune molecules, in combination with other biochemical markers, may provide disease-specific information and new targets for countermeasures. The presence of pathogen specific markers and an understanding of the molecular capabilities and adaptations of the pathogen when it interacts with its host may likewise assist in early detection and provide opportunities for targeting countermeasures. An important question that needs to be addressed is whether these molecular-based approaches will prove useful for early diagnosis, complement current methods of direct agent detection, and aid development and use of countermeasures. Lawrence Livermore National Laboratory (LLNL) will host a workshop to explore the utility of host- and pathogen-based molecular diagnostics, prioritize key research issues, and determine the critical steps needed to transition host-pathogen research to tools that can be applied towards a more effective national bio-defense strategy. The workshop will bring together leading researchers/scientists in the

  12. Campylobacter ureolyticus: an emerging gastrointestinal pathogen?

    LENUS (Irish Health Repository)

    Bullman, Susan

    2011-03-01

    A total of 7194 faecal samples collected over a 1-year period from patients presenting with diarrhoea were screened for Campylobacter spp. using EntericBio(®) , a multiplex-PCR system. Of 349 Campylobacter-positive samples, 23.8% were shown to be Campylobacter ureolyticus, using a combination of 16S rRNA gene analysis and highly specific primers targeting the HSP60 gene of this organism. This is, to the best of our knowledge, the first report of C. ureolyticus in the faeces of patients presenting with gastroenteritis and may suggest a role for this organism as an emerging enteric pathogen.

  13. Acanthamoeba: ecology, pathogenicity and laboratory detection.

    Science.gov (United States)

    Walker, C W

    1996-06-01

    Acanthamoeba spp. are ubiquitous free-living protozoa found in a wide range of environmental niches. They are resistant to disinfectants, temperature variation and desiccation and are responsible for two recognised diseases in humans, granulomatous amoebic encephalitis and keratitis. Both infections are rare, although the latter is currently receiving more attention following the association between Acanthamoeba and the wearing of contact lenses. Laboratory diagnosis is unusual but not beyond the bounds of most routine clinical microbiology departments. In this review the various aspects surrounding the ecology, pathogenicity and laboratory detection of Acanthamoeba spp. are considered.

  14. Control of indigenous pathogenic bacteria in seafood

    DEFF Research Database (Denmark)

    Huss, Hans Henrik

    1997-01-01

    of disease, are used to place the various seafood products in risk categories and to identify areas of concern. It is concluded that the presence of pathogens in molluscs and the growth of Listeria monocytogenes in lightly preserved fish products are hazards which are presently not under control. In order...... to prevent growth and toxin production by Clostridium botulinum when products are stored at abuse temperature, it is recommended that additional barriers to growth are included in lightly preserved (e.g. cold smoked salmon) and low-heat treated (e.g REPFEDS) products. It is finally pointed out...

  15. Enterobacter agglomerans: the clinically important plant pathogen.

    Science.gov (United States)

    Geere, I. W.

    1977-01-01

    During a 5-month period Enterobacter agglomerans, now described as a member of the phytopathogenic genus Erwinia, was isolated from 13 patients in a general hospital; in 1 patient it was isolated from two sites. In six instances the organism was the sole pathogen isolated, in two instances it may have contributed to infection and in the remaining instances it was probably a transient saprophyte. The strains showed some variation in biochemical reactions but were similar in colonial morphology and were consistently sensitive to several antibiotics. Although this organism is prevalent in the general environment and usually relatively benign, it does have a potential for nosocomial infection. PMID:837319

  16. Survival of foodborne pathogens on inshell walnuts.

    Science.gov (United States)

    Blessington, Tyann; Theofel, Christopher G; Mitcham, Elizabeth J; Harris, Linda J

    2013-09-16

    The survival of Salmonella enterica Enteritidis PT 30 or five-strain cocktails of S. enterica, Escherichia coli O157:H7, and Listeria monocytogenes was evaluated on inshell walnuts during storage. Inshell walnuts were separately inoculated with an aqueous preparation of the pathogens at levels of 10 to 4 log CFU/nut, dried for 24 h, and then stored at either 4 °C or ambient conditions (23-25 °C, 25-35% relative humidity) for 3 weeks to more than 1 year. During the initial 24-h drying period, bacterial levels declined by 0.7 to 2.4 log CFU/nut. After the inoculum dried, further declines of approximately 0.1 log CFU/nut per month of Salmonella Enteritidis PT 30 levels were observed on inshell walnuts stored at 4 °C; at ambient conditions the rates of decline ranged from 0.55 to 2.5 log CFU/nut per month. Rates of decline were generally greater during the first few weeks of storage, particularly at lower inoculum levels. The survival of the five-strain cocktails inoculated at very low levels (under 400 CFU/nut) was determined during storage at ambient conditions. The pathogens could be recovered by either enumeration or enrichment from most samples throughout the 3-month storage period; reductions in bacterial levels from the beginning to end of storage were 0.7, 0.2, and 2.3 log CFU/nut for Salmonella, E. coli O157:H7, and L. monocytogenes, respectively. For 6% of all nut samples (14 of 234 samples), pathogens were isolated from the second but not first 24-h enrichment, suggesting that bacterial cells were viable but not easily culturable. Salmonella-inoculated walnuts were exposed for 2 min to water or a 3% solution of sodium hypochlorite (to mimic commercial brightening) either 24 h or 7 days after inoculation; treated nuts were dried for 24h and held at ambient conditions. Salmonella levels were reduced by less than 0.5 log or 2.4 to 2.6 log CFU/nut on water- or chlorine- treated walnuts, respectively, regardless of postinoculation treatment time. Additional

  17. Epidemiology and pathogenicity of zoonotic streptococci.

    Science.gov (United States)

    Fulde, Marcus; Valentin-Weigand, Peter

    2013-01-01

    Zoonotic infections caused by Streptococcus spp. have been neglected in spite of the fact that frequency and severity of outbreaks increased dramatically in recent years. This may be due to non-identification since respective species are often not considered in human medical diagnostic procedures. On the other hand, an expanding human population concomitant with an increasing demand for food and the increased number of companion animals favour conditions for host species adaptation of animal streptococci. This review aims to give an overview on streptococcal zoonoses with focus on epidemiology and pathogenicity of four major zoonotic species, Streptococcus canis, Streptococcus equi sub. zooepidemicus, Streptococcus iniae and Streptococcus suis.

  18. Bacteriophages in the control of pathogenic vibrios

    DEFF Research Database (Denmark)

    Plaza, Nicolás; Castillo Bermúdez, Daniel Elías; Perez-Reytor, Diliana

    2018-01-01

    constitute a continuing threat for aquaculture. Moreover, the continuous use of antibiotics has been accompanied by an emergence of antibiotic resistance in Vibrio species, implying a necessity for efficient treatments. One promising alternative that emerges is the use of lytic bacteriophages; however......, there are some drawbacks that should be overcome to make phage therapy a widely accepted method. In this work, we discuss about the major pathogenic Vibrio species and the progress, benefits and disadvantages that have been detected during the experimental use of bacteriophages to their control....

  19. Possible use of ail and foxA polymorphisms for detecting pathogenic Yersinia enterocolitica.

    Science.gov (United States)

    Huang, Ying; Wang, Xin; Cui, Zhigang; Yang, Yuhuan; Xiao, Yuchun; Tang, Liuying; Kan, Biao; Xu, Jianguo; Jing, Huaiqi

    2010-08-07

    Yersinia enterocolitica is an enteric pathogen that invades the intestinal mucosa and proliferates within the lymphoid follicles (Peyer's patches). The attachment invasion locus (ail) mediates invasion by Y. enterocolitica and confers an invasive phenotype upon non-invasive E. coli; ail is the primary virulence factor of Y. enterocolitica. The ferrioxamine receptor (foxA) located on the Y. enterocolitica chromosome, together with its transport protein, transports a siderophore specific for ferric ion. Currently, ail is the primary target gene for nucleic acid detection of pathogenic Y. enterocolitica. The genes ail and foxA in 271 pathogenic and 27 non-pathogenic Y. enterocolitica strains isolated from China and 10 reference strains were sequenced, aligned, compared to the ail and foxA sequences of Yersinia enterocolitica subsp. enterocolitica 8081 (Genbank: NC_008800), and analyzed for sequence polymorphism. The ail from the 282 strains showed 3 sequence patterns: 277 strains of serotypes O:3, O:9 and O:5, 27 with identical nucleic acid sequences formed pattern A1; 4 strains of serotype 1B/O:8 with identical nucleic acid sequences formed pattern A2; and one Chinese isolate 2/O:9 formed pattern A3. In the primary coding region of the foxA ORF (Genebank: X60447 nt 433-1866; nt 28 to 1,461 in the ORF), the sequences formed 3 groups and were further divided into 8 sequence patterns. The ail and foxA loci of pathogenic Y. enterocolitica have been analyzed. The ail sequence was highly conserved among the same serotype strains from different sources; and foxA was highly conserved among the pathogenic strains, although there was some sequence diversity. Fewer strains were used from outside China, which is a limitation of the study.

  20. Possible use of ail and foxA polymorphisms for detecting pathogenic Yersinia enterocolitica

    Directory of Open Access Journals (Sweden)

    Huang Ying

    2010-08-01

    Full Text Available Abstract Background Yersinia enterocolitica is an enteric pathogen that invades the intestinal mucosa and proliferates within the lymphoid follicles (Peyer's patches. The attachment invasion locus (ail mediates invasion by Y. enterocolitica and confers an invasive phenotype upon non-invasive E. coli; ail is the primary virulence factor of Y. enterocolitica. The ferrioxamine receptor (foxA located on the Y. enterocolitica chromosome, together with its transport protein, transports a siderophore specific for ferric ion. Currently, ail is the primary target gene for nucleic acid detection of pathogenic Y. enterocolitica. Results The genes ail and foxA in 271 pathogenic and 27 non-pathogenic Y. enterocolitica strains isolated from China and 10 reference strains were sequenced, aligned, compared to the ail and foxA sequences of Yersinia enterocolitica subsp. enterocolitica 8081 (Genbank: NC_008800, and analyzed for sequence polymorphism. The ail from the 282 strains showed 3 sequence patterns: 277 strains of serotypes O:3, O:9 and O:5, 27 with identical nucleic acid sequences formed pattern A1; 4 strains of serotype 1B/O:8 with identical nucleic acid sequences formed pattern A2; and one Chinese isolate 2/O:9 formed pattern A3. In the primary coding region of the foxA ORF (Genebank: X60447 nt 433-1866; nt 28 to 1,461 in the ORF, the sequences formed 3 groups and were further divided into 8 sequence patterns. Conclusion The ail and foxA loci of pathogenic Y. enterocolitica have been analyzed. The ail sequence was highly conserved among the same serotype strains from different sources; and foxA was highly conserved among the pathogenic strains, although there was some sequence diversity. Fewer strains were used from outside China, which is a limitation of the study.

  1. Utilisation of gamma radiation of Cobalt-60 as quarantine treatment of medicinal plant, aromatic and seasoning plants dehydrated infested by Lasioderma serricorne (Fabricius, 1792) (Coleoptera, Anobiidae) and Plodia interpunctella (Hubner, 1813) (Lepidoptera, Pyralidae)

    International Nuclear Information System (INIS)

    Alves, Juliana Nazare

    2007-01-01

    The research had as objective the use of the gamma radiation of the Cobalto-60 as quarantine treatment of the medicinal plant, aromatic and seasoning plants dehydrated infested by Lasioderma serricorne and Plodia interpunctella determining the disinfestation doses to attend the criterion in the not emergency of adults of the species in study and analysing through the Chromatography of Thin Layer the effect of the gamma radiation of the cobalto-60 on the active principle of extract dehydrated of Chamomilla recutita, Pimpinella anisum, Origanum vulgare, Cymbopogon citratus, Ocimum basilicum and Thymus vulgaris. The work was developed in the Laboratorio de Inseticidas in the Instituto Biologico in Sao Paulo in the period of August of 2005 the June of 2007. The radiation source used gamma was an experimental irradiator of Cobalto-60, model Gamacell 220, located in the Instituto de Pesquisas Energeticas e Nucleares - IPEN, located in Sao Paulo. In the period of 30 days after the irradiation of the samples evaluated the number of adults emerged of Lasioderma serricorne and Plodia interpunctella, using the data of mortality for the analysis of Probit. Obtained 100% of not emergency of adults in the Lasioderma serricorne with the dose of 2,00 kGy and 100% of not emergency of adults in the Plodia interpunctella with the dose of 2,25 kGy. The Chromatographic Analysis of Thin Layer was to evaluate did not show chemical differences in the extracts analysed. (author)

  2. Development of saliva-based exposure assays for detecting exposure to waterborne pathogens

    Science.gov (United States)

    Identifying which pathogens we are exposed to can be challenging because many types of pathogens can be found in water and many pathogens have similar symptoms. EPA scientists have developed a simple way to measure human exposure to waterborne pathogens.

  3. HEAO A-2 extragalactic results

    Science.gov (United States)

    Boldt, E. A.

    1979-01-01

    The all-sky surveys made with the A-2 instrument aboard HEAO-1 involved spectroscopy over a broad enough band width, with sufficient resolution, to obtain the basic spectral characteristics for two extreme aspects of the extragalactic X-ray sky. The overall spectrum (above 3 KeV) is remarkably well decribed by a thermal model. At the other extreme, the detailed broad-band observations of individual sources are restricted to objects within the present epoch. The objects include several individual active galaxies studied in detail for the first time as well as clusters of galaxies. Relating these results to the vast spatially unresolved hard X-ray flux measured with this instruments as well as the softer X-rays (at less than 3 keV) spatially resolved to high redshifts with the Einstein Observatory remains a challenge.

  4. Emerging microbial biocontrol strategies for plant pathogens.

    Science.gov (United States)

    Syed Ab Rahman, Sharifah Farhana; Singh, Eugenie; Pieterse, Corné M J; Schenk, Peer M

    2018-02-01

    To address food security, agricultural yields must increase to match the growing human population in the near future. There is now a strong push to develop low-input and more sustainable agricultural practices that include alternatives to chemicals for controlling pests and diseases, a major factor of heavy losses in agricultural production. Based on the adverse effects of some chemicals on human health, the environment and living organisms, researchers are focusing on potential biological control microbes as viable alternatives for the management of pests and plant pathogens. There is a growing body of evidence that demonstrates the potential of leaf and root-associated microbiomes to increase plant efficiency and yield in cropping systems. It is important to understand the role of these microbes in promoting growth and controlling diseases, and their application as biofertilizers and biopesticides whose success in the field is still inconsistent. This review focusses on how biocontrol microbes modulate plant defense mechanisms, deploy biocontrol actions in plants and offer new strategies to control plant pathogens. Apart from simply applying individual biocontrol microbes, there are now efforts to improve, facilitate and maintain long-term plant colonization. In particular, great hopes are associated with the new approaches of using "plant-optimized microbiomes" (microbiome engineering) and establishing the genetic basis of beneficial plant-microbe interactions to enable breeding of "microbe-optimized crops". Copyright © 2017 Elsevier B.V. All rights reserved.

  5. Proteomics of survival structures of fungal pathogens.

    Science.gov (United States)

    Loginov, Dmitry; Šebela, Marek

    2016-09-25

    Fungal pathogens are causal agents of numerous human, animal, and plant diseases. They employ various infection modes to overcome host defense systems. Infection mechanisms of different fungi have been subjected to many comprehensive studies. These investigations have been facilitated by the development of various '-omics' techniques, and proteomics has one of the leading roles in this regard. Fungal conidia and sclerotia could be considered the most important structures for pathogenesis as their germination is one of the first steps towards a host infection. They represent interesting objects for proteomic studies because of the presence of unique proteins with unexplored biotechnological potential required for pathogen viability, development and the subsequent host infection. Proteomic peculiarities of survival structures of different fungi, including those of biotechnological significance (e.g., Asperillus fumigatus, A. nidulans, Metarhizium anisopliae), in a dormant state, as well as changes in the protein production during early stages of fungal development are the subjects of the present review. We focused on biological aspects of proteomic studies of fungal survival structures rather than on an evaluation of proteomic approaches. For that reason, proteins that have been identified in this context are discussed from the point of view of their involvement in different biological processes and possible functions assigned to them. This is the first review paper summarizing recent advances in proteomics of fungal survival structures. Copyright © 2016 Elsevier B.V. All rights reserved.

  6. Helicobacter pylori: a poor man's gut pathogen?

    Directory of Open Access Journals (Sweden)

    Khalifa Mohammed

    2010-03-01

    Full Text Available Abstract Helicobacter pylori is one of the human pathogens with highest prevalence around the world; yet, its principal mode of transmission remains largely unknown. The role of H. pylori in gastric disease and cancer has not been established until the end of the 20th century. Since then, its epidemiology has been extensively studied, and an accruing body of literature suggests that not all humans are equally at risk of infection by this gut pathogen. Here, we briefly review the different epidemiological aspects of H. pylori infection with emphasis on those factors related to human poverty. The epidemiology of H. pylori infection is characterized by marked differences between developing and developed countries, notably among children. In addition, congruent lines of evidence point out to socioeconomic factors and living standards as main determinants of the age-dependent acquisition rate of H. pylori, and consequently its prevalence. These data are alarming in the light of the changing global climate and birth rate, which are expected to change the demography of our planet, putting more children at risk of H. pylori and its complications for years to come.

  7. Vibrio parahaemolyticus- An emerging foodborne pathogen

    Directory of Open Access Journals (Sweden)

    S Nelapati

    2012-02-01

    Full Text Available Vibrio parahaemolyticus is a halophilic gram negative, motile, oxidase positive, straight or curved rod-shaped, facultative anaerobic bacteria that occur naturally in the marine environment. They form part of the indigenous microflora of aquatic habitats of various salinity and are the major causative agents for some of the most serious diseases in fish, shellfish and penacid shrimp. This human pathogen causes acute gastroenteritis characterized by diarrhea, vomiting and abdominal cramps through consumption of contaminated raw fish or shellfish. V. parahaemolyticus is the leading cause of gastroenteritis due to the consumption of seafood worldwide. The incidence of V. parahaemolyticus infection has been increasing in many parts of the world, due to the emergence of O3:K6 serotype carrying the tdh gene which is responsible for most outbreaks worldwide. The pathogenicity of this organism is closely correlated with the Kanagawa phenomenon (KP + due to production of Kanagawa hemolysin or the thermostable direct hemolysin (TDH. The TDH and TRH (TDH-related hemolysin encoded by tdh and trh genes are considered to be important virulence factors. [Vet. World 2012; 5(1.000: 48-63

  8. Fusarium species as pathogen on orchids.

    Science.gov (United States)

    Srivastava, Shikha; Kadooka, Chris; Uchida, Janice Y

    2018-03-01

    The recent surge in demand for exotic ornamental crops such as orchids has led to a rise in international production, and a sharp increase in the number of plant and plant products moving between countries. Along with the plants, diseases are also being transported and introduced into new areas. Fusarium is one of the major diseases causing pathogens infecting orchids that is spreading through international trade. Studies have identified several species of Fusarium associated with orchids, some are pathogenic and cause symptoms such as leaf and flower spots, leaf or sheath blights, pseudostem or root rots, and wilts. Infection and damage caused by Fusarium reduces the quality of plants and flowers, and can cause severe economic losses. This review documents the current status of the Fusarium-orchid interaction, and illustrates challenges and future perspectives based on the available literature. This review is the first of Fusarium and orchid interactions, and integrates diverse results that both furthers the understanding and knowledge of this disease complex, and will enable the development of effective disease management practices. Copyright © 2017 Elsevier GmbH. All rights reserved.

  9. Bacterial pathogens in a reactor cooling reservoir

    International Nuclear Information System (INIS)

    Kasweck, K.L.; Fliermans, C.B.

    1978-01-01

    The results of the sampling in both Par Pond and Clark Hill Reservoir are given. The frequency of isolation is a qualitative parameter which indicates how often the specified bacterium was isolated from each habitat. Initial scoping experiments demonstrated that a wider variety of pathogenic bacteria occur in Par Pond than in Clark Hill Reservoir. Such findings are interesting because Par Pond does not receive any human wastes directly, yet bacteria generally associated with human wastes are more frequently isolated from Par Pond. Previous studies have demonstrated that certain non-spore-forming enteric bacteria do not survive the intense heat associated with the cooling water when the reactor is operating. However, even when the reactor is not operating, cooling water, consisting of 10% makeup water from Savannah River, continues to flow into Par Pond. This flow provides a source of bacteria which inoculate Par Pond. Once the reactor is again operating, these same bacteria appear to be able to survive and grow within the Par Pond system. Thus, Par Pond and the associated lakes and canals of the Par Pond system provide a pool of pathogens that normally would not survive in natural waters

  10. Hybrid histidine kinases in pathogenic fungi.

    Science.gov (United States)

    Defosse, Tatiana A; Sharma, Anupam; Mondal, Alok K; Dugé de Bernonville, Thomas; Latgé, Jean-Paul; Calderone, Richard; Giglioli-Guivarc'h, Nathalie; Courdavault, Vincent; Clastre, Marc; Papon, Nicolas

    2015-03-01

    Histidine kinases (HK) sense and transduce via phosphorylation events many intra- and extracellular signals in bacteria, archaea, slime moulds and plants. HK are also widespread in the fungal kingdom, but their precise roles in the regulation of physiological processes remain largely obscure. Expanding genomic resources have recently given the opportunity to identify uncharacterised HK family members in yeasts and moulds and now allow proposing a complex classification of Basidiomycota, Ascomycota and lower fungi HK. A growing number of genetic approaches have progressively provided new insight into the role of several groups of HK in prominent fungal pathogens. In particular, a series of studies have revealed that members of group III HK, which occur in the highest number of fungal species and contain a unique N-terminus region consisting of multiple HAMP domain repeats, regulate morphogenesis and virulence in various human, plant and insect pathogenic fungi. This research field is further supported by recent shape-function studies providing clear correlation between structural properties and signalling states in group III HK. Since HK are absent in mammals, these represent interesting fungal target for the discovery of new antifungal drugs. © 2015 John Wiley & Sons Ltd.

  11. Burkholderia glumae: next major pathogen of rice?

    Science.gov (United States)

    Ham, Jong Hyun; Melanson, Rebecca A; Rush, Milton C

    2011-05-01

    Burkholderia glumae causes bacterial panicle blight of rice, which is an increasingly important disease problem in global rice production. Toxoflavin and lipase are known to be major virulence factors of this pathogen, and their production is dependent on the TofI/TofR quorum-sensing system, which is mediated by N-octanoyl homoserine lactone. Flagellar biogenesis and a type III secretion system are also required for full virulence of B. glumae. Bacterial panicle blight is thought to be caused by seed-borne B. glumae; however, its disease cycle is not fully understood. In spite of its economic importance, neither effective control measures for bacterial panicle blight nor rice varieties showing complete resistance to the disease are currently available. A better understanding of the molecular mechanisms underlying B. glumae virulence and of the rice defence mechanisms against the pathogen would lead to the development of better methods of disease control for bacterial panicle blight. Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia. Gram-negative, capsulated, motile, lophotrichous flagella, pectolytic. Aborted seed, empty grains as a result of failure of grain filling, brown spots on panicles, seedling rot. Seed sterilization, planting partially resistant lines (no completely resistant line is available). KNOWN VIRULENCE FACTORS: Toxoflavin, lipase, type III effectors. © 2010 LSU AGCENTER. MOLECULAR PLANT PATHOLOGY © 2010 BSPP AND BLACKWELL PUBLISHING LTD.

  12. Pathogenicity of two Egyptian H5N1 highly pathogenic avian influenza viruses in domestic ducks.

    Science.gov (United States)

    Wasilenko, J L; Arafa, A M; Selim, A A; Hassan, M K; Aly, M M; Ali, A; Nassif, S; Elebiary, E; Balish, A; Klimov, A; Suarez, D L; Swayne, D E; Pantin-Jackwood, M J

    2011-01-01

    Domestic ducks have been implicated in the dissemination and evolution of H5N1 highly pathogenic avian influenza (HPAI) viruses. In this study, two H5N1 HPAI viruses belonging to clade 2.2.1 isolated in Egypt in 2007 and 2008 were analyzed for their pathogenicity in domestic Pekin ducks. Both viruses produced clinical signs and mortality, but the 2008 virus was more virulent, inducing early onset of neurological signs and killing all ducks with a mean death time (MDT) of 4.1 days. The 2007 virus killed 3/8 ducks with a MDT of 7 days. Full-genome sequencing and phylogenetic analysis were used to examine differences in the virus genes that might explain the differences observed in pathogenicity. The genomes differed in 49 amino acids, with most of the differences found in the hemagglutinin protein. This increase in pathogenicity in ducks observed with certain H5N1 HPAI viruses has implications for the control of the disease, since vaccinated ducks infected with highly virulent strains shed viruses for longer periods of time, perpetuating the virus in the environment and increasing the possibility of transmission to susceptible birds.

  13. Yeast cell differentiation: Lessons from pathogenic and non-pathogenic yeasts

    Czech Academy of Sciences Publication Activity Database

    Pálková, Z.; Váchová, Libuše

    2016-01-01

    Roč. 57, SEP (2016), s. 110-119 ISSN 1084-9521 R&D Projects: GA ČR GA13-08605S; GA MŠk(CZ) ED1.1.00/02.0109 Institutional support: RVO:61388971 Keywords : Pathogenic yeasts * Biofilms and colonies * Cell differentiation Subject RIV: EE - Microbiology, Virology Impact factor: 6.614, year: 2016

  14. Effect of electron beam irradiation on pathogenicity and pathogenic enzyme activity of botrytis cinerea

    International Nuclear Information System (INIS)

    Chen Zhaoliang; Wang Haihong; Qiao Yongjin

    2013-01-01

    In order to define the effect of electron beam irradiation on pathogenicity of Botrytis cinerea mycelia, the disease parameters of strawberry fruits inoculated with mycelia of B. cinerea irradiated by electron beam with different dose were tested in vivo, the production and activity of pectinase and cellulase secreted by B. cinerea irradiated by electron beam were also tested by DNS method. The results showed that pathogenicity of irradiated B. cinerea decreased significantly. The disease incidence and disease index of strawberry inoculated by irradiated B. cinerea after 3 days and 5 days was only 15.00% and 11.39 compared to control (91.67% and 77.78), respectively. The activity of pectinase and cellulase of B. cinerea irradiated by electron beam with above 2.0 kGy were inhibited obviously. The activity of PMG of irradiated B. cinerea decreased by 37.65% and 57.46% compared with control 3 days and 5 days cultured at 20℃, and the activity of CX and BG decreased by over 60% than that of control. The hardness of strawberry treated by enzyme solution which producted by B. cinerea irradiated by electron beam at 2.0 kGy was higher than that of control strawberry and it mainted disease resistance well. Electron beam can inhibited the pathogenic enzyme activity and pathogenicity of B. cinerea obviously. So it can control gray mold of postharvest strawberry effectively. (authors)

  15. Pathogenicity in POLG syndromes: DNA polymerase gamma pathogenicity prediction server and database.

    Science.gov (United States)

    Nurminen, Anssi; Farnum, Gregory A; Kaguni, Laurie S

    2017-06-01

    DNA polymerase gamma (POLG) is the replicative polymerase responsible for maintaining mitochondrial DNA (mtDNA). Disorders related to its functionality are a major cause of mitochondrial disease. The clinical spectrum of POLG syndromes includes Alpers-Huttenlocher syndrome (AHS), childhood myocerebrohepatopathy spectrum (MCHS), myoclonic epilepsy myopathy sensory ataxia (MEMSA), the ataxia neuropathy spectrum (ANS) and progressive external ophthalmoplegia (PEO). We have collected all publicly available POLG-related patient data and analyzed it using our pathogenic clustering model to provide a new research and clinical tool in the form of an online server. The server evaluates the pathogenicity of both previously reported and novel mutations. There are currently 176 unique point mutations reported and found in mitochondrial patients in the gene encoding the catalytic subunit of POLG, POLG . The mutations are distributed nearly uniformly along the length of the primary amino acid sequence of the gene. Our analysis shows that most of the mutations are recessive, and that the reported dominant mutations cluster within the polymerase active site in the tertiary structure of the POLG enzyme. The POLG Pathogenicity Prediction Server (http://polg.bmb.msu.edu) is targeted at clinicians and scientists studying POLG disorders, and aims to provide the most current available information regarding the pathogenicity of POLG mutations.

  16. Prediction of molecular mimicry candidates in human pathogenic bacteria.

    Science.gov (United States)

    Doxey, Andrew C; McConkey, Brendan J

    2013-08-15

    Molecular mimicry of host proteins is a common strategy adopted by bacterial pathogens to interfere with and exploit host processes. Despite the availability of pathogen genomes, few studies have attempted to predict virulence-associated mimicry relationships directly from genomic sequences. Here, we analyzed the proteomes of 62 pathogenic and 66 non-pathogenic bacterial species, and screened for the top pathogen-specific or pathogen-enriched sequence similarities to human proteins. The screen identified approximately 100 potential mimicry relationships including well-characterized examples among the top-scoring hits (e.g., RalF, internalin, yopH, and others), with about 1/3 of predicted relationships supported by existing literature. Examination of homology to virulence factors, statistically enriched functions, and comparison with literature indicated that the detected mimics target key host structures (e.g., extracellular matrix, ECM) and pathways (e.g., cell adhesion, lipid metabolism, and immune signaling). The top-scoring and most widespread mimicry pattern detected among pathogens consisted of elevated sequence similarities to ECM proteins including collagens and leucine-rich repeat proteins. Unexpectedly, analysis of the pathogen counterparts of these proteins revealed that they have evolved independently in different species of bacterial pathogens from separate repeat amplifications. Thus, our analysis provides evidence for two classes of mimics: complex proteins such as enzymes that have been acquired by eukaryote-to-pathogen horizontal transfer, and simpler repeat proteins that have independently evolved to mimic the host ECM. Ultimately, computational detection of pathogen-specific and pathogen-enriched similarities to host proteins provides insights into potentially novel mimicry-mediated virulence mechanisms of pathogenic bacteria.

  17. Transport and fate of microbial pathogens in agricultural settings

    Science.gov (United States)

    Bradford, Scott A.; Morales, Veronica L.; Zhang, Wei; Harvey, Ronald W.; Packman, Aaron I.; Mohanram, Arvind; Welty, Claire

    2013-01-01

    An understanding of the transport and survival of microbial pathogens (pathogens hereafter) in agricultural settings is needed to assess the risk of pathogen contamination to water and food resources, and to develop control strategies and treatment options. However, many knowledge gaps still remain in predicting the fate and transport of pathogens in runoff water, and then through the shallow vadose zone and groundwater. A number of transport pathways, processes, factors, and mathematical models often are needed to describe pathogen fate in agricultural settings. The level of complexity is dramatically enhanced by soil heterogeneity, as well as by temporal variability in temperature, water inputs, and pathogen sources. There is substantial variability in pathogen migration pathways, leading to changes in the dominant processes that control pathogen transport over different spatial and temporal scales. For example, intense rainfall events can generate runoff and preferential flow that can rapidly transport pathogens. Pathogens that survive for extended periods of time have a greatly enhanced probability of remaining viable when subjected to such rapid-transport events. Conversely, in dry seasons, pathogen transport depends more strongly on retention at diverse environmental surfaces controlled by a multitude of coupled physical, chemical, and microbiological factors. These interactions are incompletely characterized, leading to a lack of consensus on the proper mathematical framework to model pathogen transport even at the column scale. In addition, little is known about how to quantify transport and survival parameters at the scale of agricultural fields or watersheds. This review summarizes current conceptual and quantitative models for pathogen transport and fate in agricultural settings over a wide range of spatial and temporal scales. The authors also discuss the benefits that can be realized by improved modeling, and potential treatments to mitigate the risk

  18. A new oligonucleotide microarray for detection of pathogenic and non-pathogenic Legionella spp.

    Directory of Open Access Journals (Sweden)

    Boyang Cao

    Full Text Available Legionella pneumophila has been recognized as the major cause of legionellosis since the discovery of the deadly disease. Legionella spp. other than L. pneumophila were later found to be responsible to many non-pneumophila infections. The non-L. pneumophila infections are likely under-detected because of a lack of effective diagnosis. In this report, we have sequenced the 16S-23S rRNA gene internal transcribed spacer (ITS of 10 Legionella species and subspecies, including L. anisa, L. bozemanii, L. dumoffii, L. fairfieldensis, L. gormanii, L. jordanis, L. maceachernii, L. micdadei, L. pneumophila subspp. fraseri and L. pneumophila subspp. pasculleii, and developed a rapid oligonucleotide microarray detection technique accordingly to identify 12 most common Legionella spp., which consist of 11 pathogenic species of L. anisa, L. bozemanii, L. dumoffii, L. gormanii, L. jordanis, L. longbeachae, L. maceachernii, L. micdadei, and L. pneumophila (including subspp. pneumophila, subspp. fraseri, and subspp. pasculleii and one non-pathogenic species, L. fairfieldensis. Twenty-nine probes that reproducibly detected multiple Legionella species with high specificity were included in the array. A total of 52 strains, including 30 target pathogens and 22 non-target bacteria, were used to verify the oligonucleotide microarray assay. The sensitivity of the detection was at 1.0 ng with genomic DNA or 13 CFU/100 mL with Legionella cultures. The microarray detected seven samples of air conditioner-condensed water with 100% accuracy, validating the technique as a promising method for applications in basic microbiology, clinical diagnosis, food safety, and epidemiological surveillance. The phylogenetic study based on the ITS has also revealed that the non-pathogenic L. fairfieldensis is the closest to L. pneumophila than the nine other pathogenic Legionella spp.

  19. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

    Science.gov (United States)

    Ma, Li-Jun; van der Does, H. Charlotte; Borkovich, Katherine A.; Coleman, Jeffrey J.; Daboussi, Marie-Josée; Di Pietro, Antonio; Dufresne, Marie; Freitag, Michael; Grabherr, Manfred; Henrissat, Bernard; Houterman, Petra M.; Kang, Seogchan; Shim, Won-Bo; Woloshuk, Charles; Xie, Xiaohui; Xu, Jin-Rong; Antoniw, John; Baker, Scott E.; Bluhm, Burton H.; Breakspear, Andrew; Brown, Daren W.; Butchko, Robert A. E.; Chapman, Sinead; Coulson, Richard; Coutinho, Pedro M.; Danchin, Etienne G. J.; Diener, Andrew; Gale, Liane R.; Gardiner, Donald M.; Goff, Stephen; Hammond-Kosack, Kim E.; Hilburn, Karen; Hua-Van, Aurélie; Jonkers, Wilfried; Kazan, Kemal; Kodira, Chinnappa D.; Koehrsen, Michael; Kumar, Lokesh; Lee, Yong-Hwan; Li, Liande; Manners, John M.; Miranda-Saavedra, Diego; Mukherjee, Mala; Park, Gyungsoon; Park, Jongsun; Park, Sook-Young; Proctor, Robert H.; Regev, Aviv; Ruiz-Roldan, M. Carmen; Sain, Divya; Sakthikumar, Sharadha; Sykes, Sean; Schwartz, David C.; Turgeon, B. Gillian; Wapinski, Ilan; Yoder, Olen; Young, Sarah; Zeng, Qiandong; Zhou, Shiguo; Galagan, James; Cuomo, Christina A.; Kistler, H. Corby; Rep, Martijn

    2011-01-01

    Fusarium species are among the most important phytopathogenic and toxigenic fungi. To understand the molecular underpinnings of pathogenicity in the genus Fusarium, we compared the genomes of three phenotypically diverse species: Fusarium graminearum, Fusarium verticillioides and Fusarium oxysporum f. sp. lycopersici. Our analysis revealed lineage-specific (LS) genomic regions in F. oxysporum that include four entire chromosomes and account for more than one-quarter of the genome. LS regions are rich in transposons and genes with distinct evolutionary profiles but related to pathogenicity, indicative of horizontal acquisition. Experimentally, we demonstrate the transfer of two LS chromosomes between strains of F. oxysporum, converting a non-pathogenic strain into a pathogen. Transfer of LS chromosomes between otherwise genetically isolated strains explains the polyphyletic origin of host specificity and the emergence of new pathogenic lineages in F. oxysporum. These findings put the evolution of fungal pathogenicity into a new perspective. PMID:20237561

  20. Atypical pathogen infection in community-acquired pneumonia.

    Science.gov (United States)

    Yu, Yun; Fei, Aihua

    2016-02-01

    Community-acquired pneumonia (CAP) is a world wide cause of morbidity and mortality. The etiology of CAP is different between countries and changes over time. With the increasing incidence, atypical pathogens are attracting more and more attention all over the world. In many countries, atypical pathogens are one of the main pathogens of CAP, and even could be the most prevalent etiology in China. Atypical pathogen infections can cause multi-system complications, which leads to a worse prognosis. Although still controversial, empirical antibiotic coverage of atypical pathogens in CAP may improve outcomes, shorten length of hospitalization, reduce mortality and lower total hospitalization costs. The macrolide resistance rate of atypical pathogens, especially Mycoplasma Pneumoniae (M. Pneumoniae) is high, so fluoroquinolones or tetracyclines should be considered as alternative therapy.